<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:39:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267659" ref_strand="+" ref_description="SGN-E267659 [cLEI-12-E11]">
      <seq>agcagaaacagagatggaggcagccaataacagcaacattggttgtgagaaagaggagtcatctccttatatctcttctgttttacctggatggttctctgagattagccccctttggcctggggaagcacactcattgaaggttgagaagatattgtttcaggggaagtctgattaccagaatgtcttggtttttcagtcatcaacttatgggaaggtgcttgttttggatggtgtgatccaacttacagagagggatgaatgtgcttatcaagagatgatcactcatcttcctctttgttcaattcccaaccctaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1893" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1593" g_stop="1472" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1471" i_stop="465" i_length="1007">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.100" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="464" g_stop="388" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="199" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="387" i_stop="295" i_length="93">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="294" g_stop="173" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="321" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E267659" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1593" e_stop="1472"/>
          <exon e_start="464" e_stop="388"/>
          <exon e_start="294" e_stop="173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGAAACAGAGATGGAGGCAGCCAATAACAGCAACAATGGTTGTGAGAAAGAGGAGTCATCTCCTTATATCTCTTCTGTTTTACCTGGATGGTTCTCTGAGATTAGCCCCCTTTGGCCTGGTTTGTTCTAATCTCTTGTATAGTTTTTTGTTTCAAGTTTTCTTTGGTTTTATGCATCTAGGTATTTAAGATTCTGCTTTTGGTGAATTGGGTTGTTATTCATATCTGGTTTTGGGGTTTATTAGTCTAATGATGTTTTGTGGGAATAAAAGTGTGGATTTTTTTGTTATTTGGGTATCTAAGGTTCTGGTTTTGGGGTTTATTACTGTAATGATGTTTGTGGGTATCAAAGTTTGGATTTTTTTGTTATTTGGGTATCTAAGGTTCTGGTTTTGGGGTTTATTACTGCAATGATGTTTGTGGGTATCAAAGTTTGGATTTTTTCTTATTTGGGTATCTGAGATTCTAGTTTTGGGTTATTGGGTTGCTCTTGGTTTCTAGTTTTGGTGGATTTTGGGGGATTATTTCTCTAATGATGTTTGTGGGTATCAAAGTTTGGATTTTTGCTTATTTGGGTATCCATAATTCTGCTTTTGAGGGATTGGGTTGCTCTTGCTTTCTGGTTTTGGTGGGGTTTTGGGGTTTATTACACTAATGATGTTTGTGGGCATCAAAGTTTGGATTTTTTCTTATTTGGGTATCCAAAATTCTGCTTTTGAGGAATTGAGTTGCTCTTGCTTTCTGATTTTAGTGGGGTTTATTACTCTAATGATGTTTGTGGGTATCAAAGTTTGTTTTTTTCCTTATTTGGGTATCCAAGTTTGTCTTTTTGGGAGATTCTTGGTGGGTTGAATACGTGAATGCTTGTGGGTATCAAAGTTGTGATGGTTGGCGATTGGTTTCAGCTTTGTTCTGTATGTTGGATTTTTAGTTTTGTAAATGTTCTGTTTTTGTGGGGGTAAGTGTGTGAGCGGGTGGTTGCTGTAAAATTCTCAAAGTGAGATTTGGCACTTGAAAACTTGCCTCCTATCTACTTCAGGATTGAGGTCTAGTTTTATTTTCTGGAAATCTAGTACTAGTTGTGAACAAAAAGGGAAGAGGTTACTGACAGGAAACGAATTATGCAGGGGAAGCACACTCATTGAAGGTTGAGAAGATATTGTTTCAGGGGAAGTCTGATTACCAGAATGTCTTGGTTTTTCAGGTATTTGGTTGATCTACTAAGGTTTTAGTTTCTTCTCTTTTTTAAGATGCTGAATGCTTTATTATGTGCTGCTTGCTCATTTTTGTGGTGCAGTCATCAACTTATGGGAAGGTGCTTGTTTTGGATGGTGTGATCCAACTTACAGAGAGGGATGAATGTGCTTATCAAGAGATGATCACTCATCTTCCTCTTTGTTCAATTCCCAACCCTAAAAA</genome_strand>
        <mrna_strand>AGCAGAAACAGAGATGGAGGCAGCCAATAACAGCAACATTGGTTGTGAGAAAGAGGAGTCATCTCCTTATATCTCTTCTGTTTTACCTGGATGGTTCTCTGAGATTAGCCCCCTTTGGCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGCACACTCATTGAAGGTTGAGAAGATATTGTTTCAGGGGAAGTCTGATTACCAGAATGTCTTGGTTTTTCAG.............................................................................................TCATCAACTTATGGGAAGGTGCTTGTTTTGGATGGTGTGATCCAACTTACAGAGAGGGATGAATGTGCTTATCAAGAGATGATCACTCATCTTCCTCTTTGTTCAATTCCCAACCCTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273991" ref_strand="+" ref_description="SGN-E273991 [cLEN-8-O11]">
      <seq>ggaagaagcataaacagagatggaggcagccaataacagcaacaatggttgtgagaaagaggagtcatctccttatatctcttctgttttacctggatggttctctgagattagccccctttggcctggggaagcacactcattgaaggttgagaagatattgtttcaggggaagtctgattaccagaatgtcttggtttttcagtcatcaacttatgggaaggtgcttgttttggatggtgtgatccaacttacagagagggatgaatgtgcttatcaagagatgatcactcatcttcctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1899" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1599" g_stop="1472" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1471" i_stop="465" i_length="1007">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.100" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="464" g_stop="388" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="205" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="387" i_stop="295" i_length="93">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="294" g_stop="195" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="305" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E273991" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1599" e_stop="1472"/>
          <exon e_start="464" e_stop="388"/>
          <exon e_start="294" e_stop="195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAAGCAGAAACAGAGATGGAGGCAGCCAATAACAGCAACAATGGTTGTGAGAAAGAGGAGTCATCTCCTTATATCTCTTCTGTTTTACCTGGATGGTTCTCTGAGATTAGCCCCCTTTGGCCTGGTTTGTTCTAATCTCTTGTATAGTTTTTTGTTTCAAGTTTTCTTTGGTTTTATGCATCTAGGTATTTAAGATTCTGCTTTTGGTGAATTGGGTTGTTATTCATATCTGGTTTTGGGGTTTATTAGTCTAATGATGTTTTGTGGGAATAAAAGTGTGGATTTTTTTGTTATTTGGGTATCTAAGGTTCTGGTTTTGGGGTTTATTACTGTAATGATGTTTGTGGGTATCAAAGTTTGGATTTTTTTGTTATTTGGGTATCTAAGGTTCTGGTTTTGGGGTTTATTACTGCAATGATGTTTGTGGGTATCAAAGTTTGGATTTTTTCTTATTTGGGTATCTGAGATTCTAGTTTTGGGTTATTGGGTTGCTCTTGGTTTCTAGTTTTGGTGGATTTTGGGGGATTATTTCTCTAATGATGTTTGTGGGTATCAAAGTTTGGATTTTTGCTTATTTGGGTATCCATAATTCTGCTTTTGAGGGATTGGGTTGCTCTTGCTTTCTGGTTTTGGTGGGGTTTTGGGGTTTATTACACTAATGATGTTTGTGGGCATCAAAGTTTGGATTTTTTCTTATTTGGGTATCCAAAATTCTGCTTTTGAGGAATTGAGTTGCTCTTGCTTTCTGATTTTAGTGGGGTTTATTACTCTAATGATGTTTGTGGGTATCAAAGTTTGTTTTTTTCCTTATTTGGGTATCCAAGTTTGTCTTTTTGGGAGATTCTTGGTGGGTTGAATACGTGAATGCTTGTGGGTATCAAAGTTGTGATGGTTGGCGATTGGTTTCAGCTTTGTTCTGTATGTTGGATTTTTAGTTTTGTAAATGTTCTGTTTTTGTGGGGGTAAGTGTGTGAGCGGGTGGTTGCTGTAAAATTCTCAAAGTGAGATTTGGCACTTGAAAACTTGCCTCCTATCTACTTCAGGATTGAGGTCTAGTTTTATTTTCTGGAAATCTAGTACTAGTTGTGAACAAAAAGGGAAGAGGTTACTGACAGGAAACGAATTATGCAGGGGAAGCACACTCATTGAAGGTTGAGAAGATATTGTTTCAGGGGAAGTCTGATTACCAGAATGTCTTGGTTTTTCAGGTATTTGGTTGATCTACTAAGGTTTTAGTTTCTTCTCTTTTTTAAGATGCTGAATGCTTTATTATGTGCTGCTTGCTCATTTTTGTGGTGCAGTCATCAACTTATGGGAAGGTGCTTGTTTTGGATGGTGTGATCCAACTTACAGAGAGGGATGAATGTGCTTATCAAGAGATGATCACTCATCTTCCTCTTT</genome_strand>
        <mrna_strand>GGAAGAAGCATAAACAGAGATGGAGGCAGCCAATAACAGCAACAATGGTTGTGAGAAAGAGGAGTCATCTCCTTATATCTCTTCTGTTTTACCTGGATGGTTCTCTGAGATTAGCCCCCTTTGGCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGCACACTCATTGAAGGTTGAGAAGATATTGTTTCAGGGGAAGTCTGATTACCAGAATGTCTTGGTTTTTCAG.............................................................................................TCATCAACTTATGGGAAGGTGCTTGTTTTGGATGGTGTGATCCAACTTACAGAGAGGGATGAATGTGCTTATCAAGAGATGATCACTCATCTTCCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282227" ref_strand="+" ref_description="SGN-E282227 [cLES-4-M11]">
      <seq>cagatttgcggtaacaattgtaggtatccacctgagttaaagggttaattcaagaccctgttttgtattgtggcctataaatagacaaggtttacttatggcagatgagtgtgctgcttttatgaagggaactgaattgccagtgaagaggccaagagaggaagaagcagaaacagagatggaggcagccaataacagcaacaatggttgtgagaaagaggagtcatctgcttatatctcttctgttttacctggatggttctctgagattagccccctttggcctggggaagcacactcattgaaggttgagaagatattgtttcaggggaagtctgattaccagaatgtcttggtttttcagtcatcaacttatgggaaggtgcttgttttggatggtgtgatccaacttacagagagggatgaatgtgcttatcaagagatgatcactcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="2058" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1758" g_stop="1472" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1471" i_stop="465" i_length="1007">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.100" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="464" g_stop="388" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="364" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="387" i_stop="295" i_length="93">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="294" g_stop="204" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="455" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E282227" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1758" e_stop="1472"/>
          <exon e_start="464" e_stop="388"/>
          <exon e_start="294" e_stop="204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTTGCGGTAACAATTGTAGGTATCCACCTGAGTTAAAGGGTTAATTCAAGACCCTGTTTTGTATTGTGGCCTATAAATAGACAAGGTTTAGTTATGGCAGATGAGTGTGCTGCTTTTATGAAGGGAACTGAATTGCCAGTGAAGAGGCCAAGAGAGGAAGAAGCAGAAACAGAGATGGAGGCAGCCAATAACAGCAACAATGGTTGTGAGAAAGAGGAGTCATCTCCTTATATCTCTTCTGTTTTACCTGGATGGTTCTCTGAGATTAGCCCCCTTTGGCCTGGTTTGTTCTAATCTCTTGTATAGTTTTTTGTTTCAAGTTTTCTTTGGTTTTATGCATCTAGGTATTTAAGATTCTGCTTTTGGTGAATTGGGTTGTTATTCATATCTGGTTTTGGGGTTTATTAGTCTAATGATGTTTTGTGGGAATAAAAGTGTGGATTTTTTTGTTATTTGGGTATCTAAGGTTCTGGTTTTGGGGTTTATTACTGTAATGATGTTTGTGGGTATCAAAGTTTGGATTTTTTTGTTATTTGGGTATCTAAGGTTCTGGTTTTGGGGTTTATTACTGCAATGATGTTTGTGGGTATCAAAGTTTGGATTTTTTCTTATTTGGGTATCTGAGATTCTAGTTTTGGGTTATTGGGTTGCTCTTGGTTTCTAGTTTTGGTGGATTTTGGGGGATTATTTCTCTAATGATGTTTGTGGGTATCAAAGTTTGGATTTTTGCTTATTTGGGTATCCATAATTCTGCTTTTGAGGGATTGGGTTGCTCTTGCTTTCTGGTTTTGGTGGGGTTTTGGGGTTTATTACACTAATGATGTTTGTGGGCATCAAAGTTTGGATTTTTTCTTATTTGGGTATCCAAAATTCTGCTTTTGAGGAATTGAGTTGCTCTTGCTTTCTGATTTTAGTGGGGTTTATTACTCTAATGATGTTTGTGGGTATCAAAGTTTGTTTTTTTCCTTATTTGGGTATCCAAGTTTGTCTTTTTGGGAGATTCTTGGTGGGTTGAATACGTGAATGCTTGTGGGTATCAAAGTTGTGATGGTTGGCGATTGGTTTCAGCTTTGTTCTGTATGTTGGATTTTTAGTTTTGTAAATGTTCTGTTTTTGTGGGGGTAAGTGTGTGAGCGGGTGGTTGCTGTAAAATTCTCAAAGTGAGATTTGGCACTTGAAAACTTGCCTCCTATCTACTTCAGGATTGAGGTCTAGTTTTATTTTCTGGAAATCTAGTACTAGTTGTGAACAAAAAGGGAAGAGGTTACTGACAGGAAACGAATTATGCAGGGGAAGCACACTCATTGAAGGTTGAGAAGATATTGTTTCAGGGGAAGTCTGATTACCAGAATGTCTTGGTTTTTCAGGTATTTGGTTGATCTACTAAGGTTTTAGTTTCTTCTCTTTTTTAAGATGCTGAATGCTTTATTATGTGCTGCTTGCTCATTTTTGTGGTGCAGTCATCAACTTATGGGAAGGTGCTTGTTTTGGATGGTGTGATCCAACTTACAGAGAGGGATGAATGTGCTTATCAAGAGATGATCACTCATC</genome_strand>
        <mrna_strand>CAGATTTGCGGTAACAATTGTAGGTATCCACCTGAGTTAAAGGGTTAATTCAAGACCCTGTTTTGTATTGTGGCCTATAAATAGACAAGGTTTACTTATGGCAGATGAGTGTGCTGCTTTTATGAAGGGAACTGAATTGCCAGTGAAGAGGCCAAGAGAGGAAGAAGCAGAAACAGAGATGGAGGCAGCCAATAACAGCAACAATGGTTGTGAGAAAGAGGAGTCATCTGCTTATATCTCTTCTGTTTTACCTGGATGGTTCTCTGAGATTAGCCCCCTTTGGCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGCACACTCATTGAAGGTTGAGAAGATATTGTTTCAGGGGAAGTCTGATTACCAGAATGTCTTGGTTTTTCAG.............................................................................................TCATCAACTTATGGGAAGGTGCTTGTTTTGGATGGTGTGATCCAACTTACAGAGAGGGATGAATGTGCTTATCAAGAGATGATCACTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364125" ref_strand="+" ref_description="SGN-E364125 [cLPP-16-O23]">
      <seq>tcagattgcggtaacaattgtaggtatccacctgagttaaagggttaaattcaagaaccctgttttgtattgtggcctataaatagacaaggtttagttatggcagatgagtgtgctgcttttgtgaagggaactgaattgccagtgaagaggccaagagaggaagaagcagaaacagagatggaagcagccaataacaccaacaatgcttgtgagaaagaggagtcatctccttatatctcttctgttttacctggatggttctctgagattagccccctttggcctggggaagcacactcattgaaggttgagaagatattgtttcaggggaagtctgattaccagaatgtcttggtttttcagtcatcaacttatggaaaggtgcttgttttggatggtgtgatccaacttacagagagggatgaatgtgcttatcaagagatgatcactcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="2059" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1759" g_stop="1472" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1471" i_stop="465" i_length="1007">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.100" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="464" g_stop="388" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="366" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="387" i_stop="295" i_length="93">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="294" g_stop="205" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="456" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E364125" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1759" e_stop="1472"/>
          <exon e_start="464" e_stop="388"/>
          <exon e_start="294" e_stop="205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATTTGCGGTAACAATTGTAGGTATCCACCTGAGTTAAAGGGTT-AATTCAAG-ACCCTGTTTTGTATTGTGGCCTATAAATAGACAAGGTTTAGTTATGGCAGATGAGTGTGCTGCTTTTATGAAGGGAACTGAATTGCCAGTGAAGAGGCCAAGAGAGGAAGAAGCAGAAACAGAGATGGAGGCAGCCAATAACAGCAACAATGGTTGTGAGAAAGAGGAGTCATCTCCTTATATCTCTTCTGTTTTACCTGGATGGTTCTCTGAGATTAGCCCCCTTTGGCCTGGTTTGTTCTAATCTCTTGTATAGTTTTTTGTTTCAAGTTTTCTTTGGTTTTATGCATCTAGGTATTTAAGATTCTGCTTTTGGTGAATTGGGTTGTTATTCATATCTGGTTTTGGGGTTTATTAGTCTAATGATGTTTTGTGGGAATAAAAGTGTGGATTTTTTTGTTATTTGGGTATCTAAGGTTCTGGTTTTGGGGTTTATTACTGTAATGATGTTTGTGGGTATCAAAGTTTGGATTTTTTTGTTATTTGGGTATCTAAGGTTCTGGTTTTGGGGTTTATTACTGCAATGATGTTTGTGGGTATCAAAGTTTGGATTTTTTCTTATTTGGGTATCTGAGATTCTAGTTTTGGGTTATTGGGTTGCTCTTGGTTTCTAGTTTTGGTGGATTTTGGGGGATTATTTCTCTAATGATGTTTGTGGGTATCAAAGTTTGGATTTTTGCTTATTTGGGTATCCATAATTCTGCTTTTGAGGGATTGGGTTGCTCTTGCTTTCTGGTTTTGGTGGGGTTTTGGGGTTTATTACACTAATGATGTTTGTGGGCATCAAAGTTTGGATTTTTTCTTATTTGGGTATCCAAAATTCTGCTTTTGAGGAATTGAGTTGCTCTTGCTTTCTGATTTTAGTGGGGTTTATTACTCTAATGATGTTTGTGGGTATCAAAGTTTGTTTTTTTCCTTATTTGGGTATCCAAGTTTGTCTTTTTGGGAGATTCTTGGTGGGTTGAATACGTGAATGCTTGTGGGTATCAAAGTTGTGATGGTTGGCGATTGGTTTCAGCTTTGTTCTGTATGTTGGATTTTTAGTTTTGTAAATGTTCTGTTTTTGTGGGGGTAAGTGTGTGAGCGGGTGGTTGCTGTAAAATTCTCAAAGTGAGATTTGGCACTTGAAAACTTGCCTCCTATCTACTTCAGGATTGAGGTCTAGTTTTATTTTCTGGAAATCTAGTACTAGTTGTGAACAAAAAGGGAAGAGGTTACTGACAGGAAACGAATTATGCAGGGGAAGCACACTCATTGAAGGTTGAGAAGATATTGTTTCAGGGGAAGTCTGATTACCAGAATGTCTTGGTTTTTCAGGTATTTGGTTGATCTACTAAGGTTTTAGTTTCTTCTCTTTTTTAAGATGCTGAATGCTTTATTATGTGCTGCTTGCTCATTTTTGTGGTGCAGTCATCAACTTATGGGAAGGTGCTTGTTTTGGATGGTGTGATCCAACTTACAGAGAGGGATGAATGTGCTTATCAAGAGATGATCACTCAT</genome_strand>
        <mrna_strand>TCAGA-TTGCGGTAACAATTGTAGGTATCCACCTGAGTTAAAGGGTTAAATTCAAGAACCCTGTTTTGTATTGTGGCCTATAAATAGACAAGGTTTAGTTATGGCAGATGAGTGTGCTGCTTTTGTGAAGGGAACTGAATTGCCAGTGAAGAGGCCAAGAGAGGAAGAAGCAGAAACAGAGATGGAAGCAGCCAATAACACCAACAATGCTTGTGAGAAAGAGGAGTCATCTCCTTATATCTCTTCTGTTTTACCTGGATGGTTCTCTGAGATTAGCCCCCTTTGGCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGCACACTCATTGAAGGTTGAGAAGATATTGTTTCAGGGGAAGTCTGATTACCAGAATGTCTTGGTTTTTCAG.............................................................................................TCATCAACTTATGGAAAGGTGCTTGTTTTGGATGGTGTGATCCAACTTACAGAGAGGGATGAATGTGCTTATCAAGAGATGATCACTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363417" ref_strand="+" ref_description="SGN-E363417 [cLPP-4-A2]">
      <seq>tcagattgcggtaacaattgtaggtatccacctgagttaaagggttaaattcaagaaccctgttttgtattgtggcctataaatagacaaggtttagttatggcagatgagtgtgctgcttttgtgaagggaactgaattgccagtgaagaggccaagagaggaagaagcagaaacagagatggaagcagccaataacaccaacaatgcttgtgagaaagaggagtcatctccttatatctcttctgttttacctggatggttctctgagattagccccctttggcctggggaagcacactcattgaaggttgagaagatattgtttcaggggaagtctgattaccagaatgtcttggtttttcagtcatcaacttatggaaaggtgcttgttttggatggtgtgatccaacttacagagagggatgaatgtgcttatcaagagatgatcactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="2059" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1759" g_stop="1472" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1471" i_stop="465" i_length="1007">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.100" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="464" g_stop="388" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="366" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="387" i_stop="295" i_length="93">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="294" g_stop="206" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="455" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E363417" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1759" e_stop="1472"/>
          <exon e_start="464" e_stop="388"/>
          <exon e_start="294" e_stop="206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATTTGCGGTAACAATTGTAGGTATCCACCTGAGTTAAAGGGTT-AATTCAAG-ACCCTGTTTTGTATTGTGGCCTATAAATAGACAAGGTTTAGTTATGGCAGATGAGTGTGCTGCTTTTATGAAGGGAACTGAATTGCCAGTGAAGAGGCCAAGAGAGGAAGAAGCAGAAACAGAGATGGAGGCAGCCAATAACAGCAACAATGGTTGTGAGAAAGAGGAGTCATCTCCTTATATCTCTTCTGTTTTACCTGGATGGTTCTCTGAGATTAGCCCCCTTTGGCCTGGTTTGTTCTAATCTCTTGTATAGTTTTTTGTTTCAAGTTTTCTTTGGTTTTATGCATCTAGGTATTTAAGATTCTGCTTTTGGTGAATTGGGTTGTTATTCATATCTGGTTTTGGGGTTTATTAGTCTAATGATGTTTTGTGGGAATAAAAGTGTGGATTTTTTTGTTATTTGGGTATCTAAGGTTCTGGTTTTGGGGTTTATTACTGTAATGATGTTTGTGGGTATCAAAGTTTGGATTTTTTTGTTATTTGGGTATCTAAGGTTCTGGTTTTGGGGTTTATTACTGCAATGATGTTTGTGGGTATCAAAGTTTGGATTTTTTCTTATTTGGGTATCTGAGATTCTAGTTTTGGGTTATTGGGTTGCTCTTGGTTTCTAGTTTTGGTGGATTTTGGGGGATTATTTCTCTAATGATGTTTGTGGGTATCAAAGTTTGGATTTTTGCTTATTTGGGTATCCATAATTCTGCTTTTGAGGGATTGGGTTGCTCTTGCTTTCTGGTTTTGGTGGGGTTTTGGGGTTTATTACACTAATGATGTTTGTGGGCATCAAAGTTTGGATTTTTTCTTATTTGGGTATCCAAAATTCTGCTTTTGAGGAATTGAGTTGCTCTTGCTTTCTGATTTTAGTGGGGTTTATTACTCTAATGATGTTTGTGGGTATCAAAGTTTGTTTTTTTCCTTATTTGGGTATCCAAGTTTGTCTTTTTGGGAGATTCTTGGTGGGTTGAATACGTGAATGCTTGTGGGTATCAAAGTTGTGATGGTTGGCGATTGGTTTCAGCTTTGTTCTGTATGTTGGATTTTTAGTTTTGTAAATGTTCTGTTTTTGTGGGGGTAAGTGTGTGAGCGGGTGGTTGCTGTAAAATTCTCAAAGTGAGATTTGGCACTTGAAAACTTGCCTCCTATCTACTTCAGGATTGAGGTCTAGTTTTATTTTCTGGAAATCTAGTACTAGTTGTGAACAAAAAGGGAAGAGGTTACTGACAGGAAACGAATTATGCAGGGGAAGCACACTCATTGAAGGTTGAGAAGATATTGTTTCAGGGGAAGTCTGATTACCAGAATGTCTTGGTTTTTCAGGTATTTGGTTGATCTACTAAGGTTTTAGTTTCTTCTCTTTTTTAAGATGCTGAATGCTTTATTATGTGCTGCTTGCTCATTTTTGTGGTGCAGTCATCAACTTATGGGAAGGTGCTTGTTTTGGATGGTGTGATCCAACTTACAGAGAGGGATGAATGTGCTTATCAAGAGATGATCACTCA</genome_strand>
        <mrna_strand>TCAGA-TTGCGGTAACAATTGTAGGTATCCACCTGAGTTAAAGGGTTAAATTCAAGAACCCTGTTTTGTATTGTGGCCTATAAATAGACAAGGTTTAGTTATGGCAGATGAGTGTGCTGCTTTTGTGAAGGGAACTGAATTGCCAGTGAAGAGGCCAAGAGAGGAAGAAGCAGAAACAGAGATGGAAGCAGCCAATAACACCAACAATGCTTGTGAGAAAGAGGAGTCATCTCCTTATATCTCTTCTGTTTTACCTGGATGGTTCTCTGAGATTAGCCCCCTTTGGCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGCACACTCATTGAAGGTTGAGAAGATATTGTTTCAGGGGAAGTCTGATTACCAGAATGTCTTGGTTTTTCAG.............................................................................................TCATCAACTTATGGAAAGGTGCTTGTTTTGGATGGTGTGATCCAACTTACAGAGAGGGATGAATGTGCTTATCAAGAGATGATCACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333684" ref_strand="+" ref_description="SGN-E333684 [cTOD-22-A21]">
      <seq>ttttttttctccttgaaaacagtgctgtaattttcatctccaataatggcggctcgtgtatttctctctcgttctgttcatctgctatcaaagggaaaaagatcccatcttggcaaaatagctgcttataaatacagcacagcggctgctttcgaggagcccgtcaagcctactgtcaatgtggatcatactaaacttcttatcaacgggcaatttgttgattctgcatcaggaaaaactttcccgactctcgaccccaggacaggggaggtaattgcacatattgctgaaggtgatgcagaagatattaatcgggcagttgctgctgctcgtaaggctttcgatgaaggaccatggcctaggatgactgcttatgaaaggtcaaagatattgctgcgccttgctgatctgattgaaaaacataacgatcaaattgcaacgctcgagacttgggacactgggaagccttatgcacaagctgctaagattgaagtaccaatggttgtacgtctactccgttattatgctggctgggcagataaaattcatggtatgaccattcctgccgatggaccatatcatgttcaaacgttgcatgaaccgatcggggttgctggtcagattatcccatggaattttcctcttctcatgttttcttggaagattggccctgctttagcttgtggtaacacaattgtgctaaagacggctgagcagacccattatctgcattgtatgtagcaagtctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="9387" stop="11848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9687" g_stop="9780" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9781" i_stop="10578" i_length="798">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10579" g_stop="10716" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="232" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10717" i_stop="10825" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10826" g_stop="10968" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="375" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10969" i_stop="11061" i_length="93">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11062" g_stop="11215" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="529" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11216" i_stop="11325" i_length="110">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11326" g_stop="11548" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="751" r_length="222" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E333684" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9687" e_stop="9780"/>
          <exon e_start="10579" e_stop="10716"/>
          <exon e_start="10826" e_stop="10968"/>
          <exon e_start="11062" e_stop="11215"/>
          <exon e_start="11326" e_stop="11548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTCTCCTTGAAAACAGTGCTGTAATTTTCATCTCCAATAATGGCGGCTCGTGTATTTCTCTCTCGTTCTGTTCATCTGCTATCAAAGGGTATTTTTTTTTTTTACTTTTATGTTTCTCTGTTTAATGGATTTTGATTATTTTTGTTGAATTAATTATGGGGTTAAATTAATGAATTTCATGATCTTGTTAATAGAATTTCAAGATTTGGATAAAAAGTTTCAATCTTTTGTGTGTTTTAGCAATAATGTTGGAGCCCCTATATGTGTTTTTAGTGGTTTTGATTTCATGATGCTTAAAGATCTCATCTTTATACAATCAAAAACAAGAAACTTAGAAACATGTGTAGTAAAATTAAACTTTCCTCCCCACTCTATCACTAGGAGGATCGAGTATCAATAGTGTTCACACTTAGCTCGAGAGGTGTTCAACGACTTGACCGAGCCTCACTTCTGTTTTTTTTTCGTTAGGACTTGTTGGTGGTGGGAGGTAACATGTATTCTGTGGAATTAGTCAAGATGCGTAAAAGCTGGCTCGAACGGCATAATCATAAAAAATACATGTGTTTTAGTGGCATGAGTCTTGTTGTACATCTCCATCATGTTAAATTATCATGATTTTTCTTTGATGTAGGTTGTTGAAGAGTTGTAGTCTTTAAATGCAGAAAACTCATTAAAATGGTTGAATATATTGTATAGAGTTTAATGTCTTTTCAACAACCTTGTGCTTATGAACTATTCAAAAGTTGAATATGGATGAATATTCAAGAGTTTTAGTCCTGTTTCACTTTGACTATTCTTAATCTTTGAGGTAGAAATCTTATTGAAATGGTTGAATATTCTGAGATGAAATGTAGAGAACTATAATGAGAAAAACTATTTTGTGTAGGAAAAAGATCCCATCTTGGCAAAATAGCTGCTTATAAATACAGCACAGCGGCTGCTTTCGAGGAGCCCGTCAAGCCTACTGTCAATGTGGATCATACTAAACTTCTTATCAACGGGCAATTTGTTGATTCTGCATCAGGTAAATTTGTTAATCCATGTTAATCACCATAATGGATCTCAATTCTCTTCTTTATACTTCTATTTTGGCCCTTTTGTTGTACAATGGAGCTAATTCGTTGAACTTTTAGGAAAAACTTTCCCGACTCTCGACCCCAGGACAGGGGAGGTAATTGCACATATTGCTGAAGGTGATGCAGAAGATATTAATCGGGCAGTTGCTGCTGCTCGTAAGGCTTTCGATGAAGGACCATGGCCTAGGATGACTGCTTATGTATCTACTTTGTATCTCTTAGTGCATTCTTTTGCTATGTTAATGAATGTGCATGCGAGATTTCATCTACTCGTTAATGGTTCATAACTGCAGGAAAGGTCAAAGATATTGCTGCGCCTTGCTGATCTGATTGAAAAACATAACGATCAAATTGCAACGCTCGAGACTTGGGACACTGGGAAGCCTTATGCACAAGCTGCTAAGATTGAAGTACCAATGGTTGTACGTCTACTCCGTTATTATGCTGGTATGTTAGATAACCATATGAAGAGCGTAATTGTATTTCGCCACTTCTTTCATGTTGGTTGGCTCCTGAAAATGTTTTATGCACCTGATGTTCTCCTTTTAATTCTGCAGGCTGGGCAGATAAAATTCATGGTATGACCATTCCTGCCGATGGACCATATCATGTTCAAACGTTGCATGAACCGATCGGGGTTGCTGGTCAGATTATCCCATGGAATTTTCCTCTTCTCATGTTTTCTTGGAAGATTGGCCCTGCTTTAGCTTGTGGTAACACAATTGTGCTAAAGACGGCTGAGCAGACCCCATTATCTGCATTGTATGTAGCAAGTCTATT</genome_strand>
        <mrna_strand>TTTTTTTTCTCCTTGAAAACAGTGCTGTAATTTTCATCTCCAATAATGGCGGCTCGTGTATTTCTCTCTCGTTCTGTTCATCTGCTATCAAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGATCCCATCTTGGCAAAATAGCTGCTTATAAATACAGCACAGCGGCTGCTTTCGAGGAGCCCGTCAAGCCTACTGTCAATGTGGATCATACTAAACTTCTTATCAACGGGCAATTTGTTGATTCTGCATCAG.............................................................................................................GAAAAACTTTCCCGACTCTCGACCCCAGGACAGGGGAGGTAATTGCACATATTGCTGAAGGTGATGCAGAAGATATTAATCGGGCAGTTGCTGCTGCTCGTAAGGCTTTCGATGAAGGACCATGGCCTAGGATGACTGCTTAT.............................................................................................GAAAGGTCAAAGATATTGCTGCGCCTTGCTGATCTGATTGAAAAACATAACGATCAAATTGCAACGCTCGAGACTTGGGACACTGGGAAGCCTTATGCACAAGCTGCTAAGATTGAAGTACCAATGGTTGTACGTCTACTCCGTTATTATGCTG..............................................................................................................GCTGGGCAGATAAAATTCATGGTATGACCATTCCTGCCGATGGACCATATCATGTTCAAACGTTGCATGAACCGATCGGGGTTGCTGGTCAGATTATCCCATGGAATTTTCCTCTTCTCATGTTTTCTTGGAAGATTGGCCCTGCTTTAGCTTGTGGTAACACAATTGTGCTAAAGACGGCTGAGCAGA-CCCATTATCTGCATTGTATGTAGCAAGTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266684" ref_strand="+" ref_description="SGN-E266684 [cLEI-5-L19]">
      <seq>tccttgaaaacagtgctgtaattttcatctccaataatggcggctcgtgtatttctctctcgttctgttcatctgctatcaaagggaaaaagatcccatcttggcaaaatagctgcttataaatacagcacagcggctgctttcgaggagcccgtcaagcctactgtcaatgtggatcatactaaacttcttatcaacgggcaatttgttgattctgcatcaggaaaaactttcccgactctcgaccccaggacaggggaggtaattgcacatattgctgaaggtgatgcagaagatattaatcgggcagttgctgctgctcgtaaggctttcgatgaaggaccatggcctaggatgactgcttatgaaaggtcaaagatattgctgcgccttgctgatctgattgaaaaacataacgatcaaattgcaacgctcgagacttgggacactgggaagccttatgcacaagctgctaagattgaagtaccaatggttgtacgtctactccgttattatgctggctgggcagataaaattcatggtatgaccattcctgccgatggaccatatcatgttcaaacgttgcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="9396" stop="11695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9696" g_stop="9780" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9781" i_stop="10578" i_length="798">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10579" g_stop="10716" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="223" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10717" i_stop="10825" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10826" g_stop="10968" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="366" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10969" i_stop="11061" i_length="93">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11062" g_stop="11215" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="520" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11216" i_stop="11325" i_length="110">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11326" g_stop="11395" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="590" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E266684" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9696" e_stop="9780"/>
          <exon e_start="10579" e_stop="10716"/>
          <exon e_start="10826" e_stop="10968"/>
          <exon e_start="11062" e_stop="11215"/>
          <exon e_start="11326" e_stop="11395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTGAAAACAGTGCTGTAATTTTCATCTCCAATAATGGCGGCTCGTGTATTTCTCTCTCGTTCTGTTCATCTGCTATCAAAGGGTATTTTTTTTTTTTACTTTTATGTTTCTCTGTTTAATGGATTTTGATTATTTTTGTTGAATTAATTATGGGGTTAAATTAATGAATTTCATGATCTTGTTAATAGAATTTCAAGATTTGGATAAAAAGTTTCAATCTTTTGTGTGTTTTAGCAATAATGTTGGAGCCCCTATATGTGTTTTTAGTGGTTTTGATTTCATGATGCTTAAAGATCTCATCTTTATACAATCAAAAACAAGAAACTTAGAAACATGTGTAGTAAAATTAAACTTTCCTCCCCACTCTATCACTAGGAGGATCGAGTATCAATAGTGTTCACACTTAGCTCGAGAGGTGTTCAACGACTTGACCGAGCCTCACTTCTGTTTTTTTTTCGTTAGGACTTGTTGGTGGTGGGAGGTAACATGTATTCTGTGGAATTAGTCAAGATGCGTAAAAGCTGGCTCGAACGGCATAATCATAAAAAATACATGTGTTTTAGTGGCATGAGTCTTGTTGTACATCTCCATCATGTTAAATTATCATGATTTTTCTTTGATGTAGGTTGTTGAAGAGTTGTAGTCTTTAAATGCAGAAAACTCATTAAAATGGTTGAATATATTGTATAGAGTTTAATGTCTTTTCAACAACCTTGTGCTTATGAACTATTCAAAAGTTGAATATGGATGAATATTCAAGAGTTTTAGTCCTGTTTCACTTTGACTATTCTTAATCTTTGAGGTAGAAATCTTATTGAAATGGTTGAATATTCTGAGATGAAATGTAGAGAACTATAATGAGAAAAACTATTTTGTGTAGGAAAAAGATCCCATCTTGGCAAAATAGCTGCTTATAAATACAGCACAGCGGCTGCTTTCGAGGAGCCCGTCAAGCCTACTGTCAATGTGGATCATACTAAACTTCTTATCAACGGGCAATTTGTTGATTCTGCATCAGGTAAATTTGTTAATCCATGTTAATCACCATAATGGATCTCAATTCTCTTCTTTATACTTCTATTTTGGCCCTTTTGTTGTACAATGGAGCTAATTCGTTGAACTTTTAGGAAAAACTTTCCCGACTCTCGACCCCAGGACAGGGGAGGTAATTGCACATATTGCTGAAGGTGATGCAGAAGATATTAATCGGGCAGTTGCTGCTGCTCGTAAGGCTTTCGATGAAGGACCATGGCCTAGGATGACTGCTTATGTATCTACTTTGTATCTCTTAGTGCATTCTTTTGCTATGTTAATGAATGTGCATGCGAGATTTCATCTACTCGTTAATGGTTCATAACTGCAGGAAAGGTCAAAGATATTGCTGCGCCTTGCTGATCTGATTGAAAAACATAACGATCAAATTGCAACGCTCGAGACTTGGGACACTGGGAAGCCTTATGCACAAGCTGCTAAGATTGAAGTACCAATGGTTGTACGTCTACTCCGTTATTATGCTGGTATGTTAGATAACCATATGAAGAGCGTAATTGTATTTCGCCACTTCTTTCATGTTGGTTGGCTCCTGAAAATGTTTTATGCACCTGATGTTCTCCTTTTAATTCTGCAGGCTGGGCAGATAAAATTCATGGTATGACCATTCCTGCCGATGGACCATATCATGTTCAAACGTTGCATGA</genome_strand>
        <mrna_strand>TCCTTGAAAACAGTGCTGTAATTTTCATCTCCAATAATGGCGGCTCGTGTATTTCTCTCTCGTTCTGTTCATCTGCTATCAAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGATCCCATCTTGGCAAAATAGCTGCTTATAAATACAGCACAGCGGCTGCTTTCGAGGAGCCCGTCAAGCCTACTGTCAATGTGGATCATACTAAACTTCTTATCAACGGGCAATTTGTTGATTCTGCATCAG.............................................................................................................GAAAAACTTTCCCGACTCTCGACCCCAGGACAGGGGAGGTAATTGCACATATTGCTGAAGGTGATGCAGAAGATATTAATCGGGCAGTTGCTGCTGCTCGTAAGGCTTTCGATGAAGGACCATGGCCTAGGATGACTGCTTAT.............................................................................................GAAAGGTCAAAGATATTGCTGCGCCTTGCTGATCTGATTGAAAAACATAACGATCAAATTGCAACGCTCGAGACTTGGGACACTGGGAAGCCTTATGCACAAGCTGCTAAGATTGAAGTACCAATGGTTGTACGTCTACTCCGTTATTATGCTG..............................................................................................................GCTGGGCAGATAAAATTCATGGTATGACCATTCCTGCCGATGGACCATATCATGTTCAAACGTTGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267895" ref_strand="+" ref_description="SGN-E267895 [cLEI-12-L15]">
      <seq>ctctcgttctgttcatctgctatcaaagggaaaaagatcccatcttggcaaaatagctgcttataaatacagcacagcggctgctttcgaggagcccgtcaagcctactgtcaatgtggatcatactaaacttcttatcaacgggcaatttgttgattctgcatcaggaaaaactttcccgactctcgaccccaggacaggggaggtaattgcacatattgctgaaggtgatgcagaagatattaatcgggcagttgctgctgctcgtaaggctttcgatgaaggaccatggcctangatgactgcttatgaaaggtcaaagatattgctgcgccttgctgatctgattgaaaaacataacgatcaaattgcaacgctcgagacttgggacactgggaagccttatgcacaagctgctaagattgaagtaccaatggttgtacgtctactccgttattatgctggctgggcagataaaattcatggtatgaccattcctgccgatggaccatatcatgttcaaacgttgcatgaaccgatcggngtngctggtcagattatcccatggaattttcctcttctcatgttttcttggaagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="9452" stop="11762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9752" g_stop="9780" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9781" i_stop="10578" i_length="798">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10579" g_stop="10716" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="167" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10717" i_stop="10825" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10826" g_stop="10968" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="310" r_length="143" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10969" i_stop="11061" i_length="93">
            <donor d_prob="0.823" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11062" g_stop="11215" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="464" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11216" i_stop="11325" i_length="110">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11326" g_stop="11462" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="601" r_length="137" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E267895" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9752" e_stop="9780"/>
          <exon e_start="10579" e_stop="10716"/>
          <exon e_start="10826" e_stop="10968"/>
          <exon e_start="11062" e_stop="11215"/>
          <exon e_start="11326" e_stop="11462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCGTTCTGTTCATCTGCTATCAAAGGGTATTTTTTTTTTTTACTTTTATGTTTCTCTGTTTAATGGATTTTGATTATTTTTGTTGAATTAATTATGGGGTTAAATTAATGAATTTCATGATCTTGTTAATAGAATTTCAAGATTTGGATAAAAAGTTTCAATCTTTTGTGTGTTTTAGCAATAATGTTGGAGCCCCTATATGTGTTTTTAGTGGTTTTGATTTCATGATGCTTAAAGATCTCATCTTTATACAATCAAAAACAAGAAACTTAGAAACATGTGTAGTAAAATTAAACTTTCCTCCCCACTCTATCACTAGGAGGATCGAGTATCAATAGTGTTCACACTTAGCTCGAGAGGTGTTCAACGACTTGACCGAGCCTCACTTCTGTTTTTTTTTCGTTAGGACTTGTTGGTGGTGGGAGGTAACATGTATTCTGTGGAATTAGTCAAGATGCGTAAAAGCTGGCTCGAACGGCATAATCATAAAAAATACATGTGTTTTAGTGGCATGAGTCTTGTTGTACATCTCCATCATGTTAAATTATCATGATTTTTCTTTGATGTAGGTTGTTGAAGAGTTGTAGTCTTTAAATGCAGAAAACTCATTAAAATGGTTGAATATATTGTATAGAGTTTAATGTCTTTTCAACAACCTTGTGCTTATGAACTATTCAAAAGTTGAATATGGATGAATATTCAAGAGTTTTAGTCCTGTTTCACTTTGACTATTCTTAATCTTTGAGGTAGAAATCTTATTGAAATGGTTGAATATTCTGAGATGAAATGTAGAGAACTATAATGAGAAAAACTATTTTGTGTAGGAAAAAGATCCCATCTTGGCAAAATAGCTGCTTATAAATACAGCACAGCGGCTGCTTTCGAGGAGCCCGTCAAGCCTACTGTCAATGTGGATCATACTAAACTTCTTATCAACGGGCAATTTGTTGATTCTGCATCAGGTAAATTTGTTAATCCATGTTAATCACCATAATGGATCTCAATTCTCTTCTTTATACTTCTATTTTGGCCCTTTTGTTGTACAATGGAGCTAATTCGTTGAACTTTTAGGAAAAACTTTCCCGACTCTCGACCCCAGGACAGGGGAGGTAATTGCACATATTGCTGAAGGTGATGCAGAAGATATTAATCGGGCAGTTGCTGCTGCTCGTAAGGCTTTCGATGAAGGACCATGGCCTAGGATGACTGCTTATGTATCTACTTTGTATCTCTTAGTGCATTCTTTTGCTATGTTAATGAATGTGCATGCGAGATTTCATCTACTCGTTAATGGTTCATAACTGCAGGAAAGGTCAAAGATATTGCTGCGCCTTGCTGATCTGATTGAAAAACATAACGATCAAATTGCAACGCTCGAGACTTGGGACACTGGGAAGCCTTATGCACAAGCTGCTAAGATTGAAGTACCAATGGTTGTACGTCTACTCCGTTATTATGCTGGTATGTTAGATAACCATATGAAGAGCGTAATTGTATTTCGCCACTTCTTTCATGTTGGTTGGCTCCTGAAAATGTTTTATGCACCTGATGTTCTCCTTTTAATTCTGCAGGCTGGGCAGATAAAATTCATGGTATGACCATTCCTGCCGATGGACCATATCATGTTCAAACGTTGCATGAACCGATCGGGGTTGCTGGTCAGATTATCCCATGGAATTTTCCTCTTCTCATGTTTTCTTGGAAGATT</genome_strand>
        <mrna_strand>CTCTCGTTCTGTTCATCTGCTATCAAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGATCCCATCTTGGCAAAATAGCTGCTTATAAATACAGCACAGCGGCTGCTTTCGAGGAGCCCGTCAAGCCTACTGTCAATGTGGATCATACTAAACTTCTTATCAACGGGCAATTTGTTGATTCTGCATCAG.............................................................................................................GAAAAACTTTCCCGACTCTCGACCCCAGGACAGGGGAGGTAATTGCACATATTGCTGAAGGTGATGCAGAAGATATTAATCGGGCAGTTGCTGCTGCTCGTAAGGCTTTCGATGAAGGACCATGGCCTANGATGACTGCTTAT.............................................................................................GAAAGGTCAAAGATATTGCTGCGCCTTGCTGATCTGATTGAAAAACATAACGATCAAATTGCAACGCTCGAGACTTGGGACACTGGGAAGCCTTATGCACAAGCTGCTAAGATTGAAGTACCAATGGTTGTACGTCTACTCCGTTATTATGCTG..............................................................................................................GCTGGGCAGATAAAATTCATGGTATGACCATTCCTGCCGATGGACCATATCATGTTCAAACGTTGCATGAACCGATCGGNGTNGCTGGTCAGATTATCCCATGGAATTTTCCTCTTCTCATGTTTTCTTGGAAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367396" ref_strand="+" ref_description="SGN-E367396 [cLPT-7-B1]">
      <seq>tcccatcttggcaatatagctgcttataaatacagcacagcggctgctctcgaggagcccatcaagcctactgtcaatgtggatcatactaaacttcttatcaacgggcagtttgttgattctgcatcaggaaaaactttcccgactctcgaccccaggacaggggaggtaattgcacatattgctgaaggtgatgcagaagatattaatcgggcagttgctgctgctcgtaaggctttcgatgaaggaccatggcctaggatgactgcttatgaaaggtcaaagatattgctgcgccttgctgatctgattgaaaaacataacgatcaaattgcaacgctcgagacttgggacactgggaagccttatgcacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="10287" stop="11463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10587" g_stop="10716" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10717" i_stop="10825" i_length="109">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10826" g_stop="10968" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="273" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10969" i_stop="11061" i_length="93">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11062" g_stop="11163" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="375" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E367396" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10587" e_stop="10716"/>
          <exon e_start="10826" e_stop="10968"/>
          <exon e_start="11062" e_stop="11163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCATCTTGGCAAAATAGCTGCTTATAAATACAGCACAGCGGCTGCTTTCGAGGAGCCCGTCAAGCCTACTGTCAATGTGGATCATACTAAACTTCTTATCAACGGGCAATTTGTTGATTCTGCATCAGGTAAATTTGTTAATCCATGTTAATCACCATAATGGATCTCAATTCTCTTCTTTATACTTCTATTTTGGCCCTTTTGTTGTACAATGGAGCTAATTCGTTGAACTTTTAGGAAAAACTTTCCCGACTCTCGACCCCAGGACAGGGGAGGTAATTGCACATATTGCTGAAGGTGATGCAGAAGATATTAATCGGGCAGTTGCTGCTGCTCGTAAGGCTTTCGATGAAGGACCATGGCCTAGGATGACTGCTTATGTATCTACTTTGTATCTCTTAGTGCATTCTTTTGCTATGTTAATGAATGTGCATGCGAGATTTCATCTACTCGTTAATGGTTCATAACTGCAGGAAAGGTCAAAGATATTGCTGCGCCTTGCTGATCTGATTGAAAAACATAACGATCAAATTGCAACGCTCGAGACTTGGGACACTGGGAAGCCTTATGCACAA</genome_strand>
        <mrna_strand>TCCCATCTTGGCAATATAGCTGCTTATAAATACAGCACAGCGGCTGCTCTCGAGGAGCCCATCAAGCCTACTGTCAATGTGGATCATACTAAACTTCTTATCAACGGGCAGTTTGTTGATTCTGCATCAG.............................................................................................................GAAAAACTTTCCCGACTCTCGACCCCAGGACAGGGGAGGTAATTGCACATATTGCTGAAGGTGATGCAGAAGATATTAATCGGGCAGTTGCTGCTGCTCGTAAGGCTTTCGATGAAGGACCATGGCCTAGGATGACTGCTTAT.............................................................................................GAAAGGTCAAAGATATTGCTGCGCCTTGCTGATCTGATTGAAAAACATAACGATCAAATTGCAACGCTCGAGACTTGGGACACTGGGAAGCCTTATGCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259624" ref_strand="+" ref_description="SGN-E259624 [cLEG-42-I15]">
      <seq>aaaattcatggtatgaccattcctgccgatggaccatatcatgttcaaacgttgcatgaaccgatcggggttgctggtcagattatcccatggaattttcctcttctcatgttttcttggaagattggccctgctttagcttgtggtaacacaattgtgctaaagacggctgagcagaccccattatctgcattgtatgtagcaagtctatttcaggaggctggcctgcctgaaggtgttctgaatataatttctggttatggtgccacagctggtgcttctctgtgtagtcatatggatgtggataagcttgcttttactggatcaacagaaaccgggaaaaccatacttgaattggctgctaagagcaatcttaagcctgtgacattggaacttggagggaaatccccttttattgtttgtgaggatgctgatattgatacggccgttgaacaagctcattttgctctcttctttaatcagggccaatgttgttgtgctggttctcggacctatgttcacgagaaggtctatgatgaatttctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="11037" stop="13309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11337" g_stop="11555" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11556" i_stop="11870" i_length="315">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11871" g_stop="11960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="309" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11961" i_stop="12679" i_length="719">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12680" g_stop="12853" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="483" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12854" i_stop="12944" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12945" g_stop="13009" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="548" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E259624" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11337" e_stop="11555"/>
          <exon e_start="11871" e_stop="11960"/>
          <exon e_start="12680" e_stop="12853"/>
          <exon e_start="12945" e_stop="13009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCATGGTATGACCATTCCTGCCGATGGACCATATCATGTTCAAACGTTGCATGAACCGATCGGGGTTGCTGGTCAGATTATCCCATGGAATTTTCCTCTTCTCATGTTTTCTTGGAAGATTGGCCCTGCTTTAGCTTGTGGTAACACAATTGTGCTAAAGACGGCTGAGCAGACCCCATTATCTGCATTGTATGTAGCAAGTCTATTTCAGGAGGTACCGTTCAAGTTTCCTCTTTTATTTCCGACAAGAGTTGTTCCACACTGCAAGTACACAAAGTCTCATCTTATAGGCATCATATGAAAAGTGAAATCATCAGTTTCGACTTCTCAAATTTTATAAAAATAATCCATTACTTCTTATACTAAGTCACTAAAGTGTCATGAGTTTGTGGTGTTAATAATAATCACAAACTGAAGCATCTACTTGTTAATATGCCACAACTTATTTCTTTTTAATACATTTTTGTTGCCACTTGCTACATGTTTCCAGTGATACGGTATATCTCTAATACTCAGTTATTACTAACAGGCTGGCCTGCCTGAAGGTGTTCTGAATATAATTTCTGGTTATGGTGCCACAGCTGGTGCTTCTCTGTGTAGTCATATGGATGTGGATAAGGTAACTCTATCTACTTTTATTCCGTCTTTTAGTCTGTTCTGTGTGAAGATCTGTAGTTTGTGGCTCTTTGGCTTTTATTTCACCATATTGTGTCAATTTATTTGGTTTGACGGATTGCTAGAGACACCACAACTACTCTTAACCTCGTTCATATTCAAGCATTTAATTCATGTATTGGCATTTGTAGCCATTTTTTTCCAAATACTAGTTGTGCCAAATGAGCTAATATCCCTCACATTGATATTATTAGTATTATTTCAAAAAATTAGTATTATTTCAAAAACAACAGTGGAGAAATCTTGTCACTTGAAAAGACTAGTTTTCATATATCAATAAAGAAGGCAAGTTTCACACATATTATGCAGGAAATCTAGTGCATCTACAATAGTTGATCCCATTCCGTATGAAAACTCTGGTAGTATTTGATGCTTAGCGTTACTCTCATTCTTAACCAATTCTGGACTGTATTTATGGGATTATAGAGTTGGTAGCACTTGAATCTTTAGCCAGCCGTGCTATTATATGCAATTTATCAAAACTCTAAGTATTAGGATGGAAGACACGTCTGCACATATGTAGCTTATTCAAGTCTAACGAGTAGATAAGGCAACAGATGACTTGAATTATCTATTTATATCTATGTATAGTTGTACATATGGAAGTAGATACCAGTATATTGCACTGGATTGGACACTGATTCACTTATGTTCCAACAACAGCTTGCTTTTACTGGATCAACAGAAACCGGGAAAACCATACTTGAATTGGCTGCTAAGAGCAATCTTAAGCCTGTGACATTGGAACTTGGAGGGAAATCCCCTTTTATTGTTTGTGAGGATGCTGATATTGATACGGCCGTTGAACAAGCTCATTTTGCTCTCTTCTTTAATCAGGTAATGTTTACTATCTATACTTCTTCGTCGGGTGTTGGTCAGGTTCATGTTAGATACTAACACGGTAACACCTATGACATAAATTTTAAAGGGCCAATGTTGTTGTGCTGGTTCTCGGACCTATGTTCACGAGAAGGTCTATGATGAATTTCTGGA</genome_strand>
        <mrna_strand>AAAATTCATGGTATGACCATTCCTGCCGATGGACCATATCATGTTCAAACGTTGCATGAACCGATCGGGGTTGCTGGTCAGATTATCCCATGGAATTTTCCTCTTCTCATGTTTTCTTGGAAGATTGGCCCTGCTTTAGCTTGTGGTAACACAATTGTGCTAAAGACGGCTGAGCAGACCCCATTATCTGCATTGTATGTAGCAAGTCTATTTCAGGAG...........................................................................................................................................................................................................................................................................................................................GCTGGCCTGCCTGAAGGTGTTCTGAATATAATTTCTGGTTATGGTGCCACAGCTGGTGCTTCTCTGTGTAGTCATATGGATGTGGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTTTTACTGGATCAACAGAAACCGGGAAAACCATACTTGAATTGGCTGCTAAGAGCAATCTTAAGCCTGTGACATTGGAACTTGGAGGGAAATCCCCTTTTATTGTTTGTGAGGATGCTGATATTGATACGGCCGTTGAACAAGCTCATTTTGCTCTCTTCTTTAATCAG...........................................................................................GGCCAATGTTGTTGTGCTGGTTCTCGGACCTATGTTCACGAGAAGGTCTATGATGAATTTCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369898" ref_strand="+" ref_description="SGN-E369898 [TUS-26-L17]">
      <seq>aaaattcatggtatgaccattcctgccgatggaccatatcatgttcaaacgttgcatgaaccgatcggggttgctggtcagattatcccatggaattttcctcttctcatgttttcttggaagattggccctgctttagcttgtggtaacacaattgtgctaaagacggctgagcagaccccattatctgcattgtatgtagcaagtctatttcaggaggctggcctgcctgaaggtgttctgaatataatttctggttatggtgccacagctggtgcttctctgtgtagtcatatggatgtgtataatctttcttttactgaatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="11037" stop="12275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11337" g_stop="11555" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11556" i_stop="11870" i_length="315">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11871" g_stop="11960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="309" r_length="90" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E369898" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11337" e_stop="11555"/>
          <exon e_start="11871" e_stop="11960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCATGGTATGACCATTCCTGCCGATGGACCATATCATGTTCAAACGTTGCATGAACCGATCGGGGTTGCTGGTCAGATTATCCCATGGAATTTTCCTCTTCTCATGTTTTCTTGGAAGATTGGCCCTGCTTTAGCTTGTGGTAACACAATTGTGCTAAAGACGGCTGAGCAGACCCCATTATCTGCATTGTATGTAGCAAGTCTATTTCAGGAGGTACCGTTCAAGTTTCCTCTTTTATTTCCGACAAGAGTTGTTCCACACTGCAAGTACACAAAGTCTCATCTTATAGGCATCATATGAAAAGTGAAATCATCAGTTTCGACTTCTCAAATTTTATAAAAATAATCCATTACTTCTTATACTAAGTCACTAAAGTGTCATGAGTTTGTGGTGTTAATAATAATCACAAACTGAAGCATCTACTTGTTAATATGCCACAACTTATTTCTTTTTAATACATTTTTGTTGCCACTTGCTACATGTTTCCAGTGATACGGTATATCTCTAATACTCAGTTATTACTAACAGGCTGGCCTGCCTGAAGGTGTTCTGAATATAATTTCTGGTTATGGTGCCACAGCTGGTGCTTCTCTGTGTAGTCATATGGATGTGGATAAG</genome_strand>
        <mrna_strand>AAAATTCATGGTATGACCATTCCTGCCGATGGACCATATCATGTTCAAACGTTGCATGAACCGATCGGGGTTGCTGGTCAGATTATCCCATGGAATTTTCCTCTTCTCATGTTTTCTTGGAAGATTGGCCCTGCTTTAGCTTGTGGTAACACAATTGTGCTAAAGACGGCTGAGCAGACCCCATTATCTGCATTGTATGTAGCAAGTCTATTTCAGGAG...........................................................................................................................................................................................................................................................................................................................GCTGGCCTGCCTGAAGGTGTTCTGAATATAATTTCTGGTTATGGTGCCACAGCTGGTGCTTCTCTGTGTAGTCATATGGATGTGTATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285592" ref_strand="+" ref_description="SGN-E285592 [cLES-5-A4]">
      <seq>tgaaaaggctgctgaaagcaagcataagcctgcgacattggaacatggagggaaatcccctcttattgcttgtgaggatgctgatattgatacggccgttgaacaagctcattttgctctcttctttaatcagggccaatgttgttgtgctggttctcggacctatgttcacgagaaggtctatgatgaatttctggagaaggcaaaggcacgcgccttgaaacgagtagttggtgatccgtttaaatcaggcactgagcagggtcctcagattgattcaaaacagttcgataagatcatgaagtacattagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="12421" stop="13580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12721" g_stop="12853" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12854" i_stop="12944" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12945" g_stop="13082" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="271" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13083" i_stop="13235" i_length="153">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13236" g_stop="13280" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="316" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E285592" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12721" e_stop="12853"/>
          <exon e_start="12945" e_stop="13082"/>
          <exon e_start="13236" e_stop="13280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTGGCTGCTAAGAGCAATCTTAAGCCTGTGACATTGGAACTTGGAGGGAAATCCCCTTTTATTGTTTGTGAGGATGCTGATATTGATACGGCCGTTGAACAAGCTCATTTTGCTCTCTTCTTTAATCAGGTAATGTTTACTATCTATACTTCTTCGTCGGGTGTTGGTCAGGTTCATGTTAGATACTAACACGGTAACACCTATGACATAAATTTTAAAGGGCCAATGTTGTTGTGCTGGTTCTCGGACCTATGTTCACGAGAAGGTCTATGATGAATTTCTGGAGAAGGCAAAGGCACGCGCCTTGAAACGAGTAGTTGGTGATCCGTTTAAATCAGGCACTGAGCAGGGTCCTCAGGTATTCATAATCTCCTAACGAATACTCTTCTTATCTGAAATGCTGGAAACCAATGTATTAAACCTGTATAATGAAAAAAAATAGCATATCTCCTTCCTTTTAAGTCTTCTCATAAGGTAACAATACCGAACCTGAGAGTTTCCTGTCACACAGATTGATTCAAAACAGTTCGATAAGATCATGAAGTACATTAGATCT</genome_strand>
        <mrna_strand>TGAAAAGGCTGCTGAAAGCAAGCATAAGCCTGCGACATTGGAACATGGAGGGAAATCCCCTCTTATTGCTTGTGAGGATGCTGATATTGATACGGCCGTTGAACAAGCTCATTTTGCTCTCTTCTTTAATCAG...........................................................................................GGCCAATGTTGTTGTGCTGGTTCTCGGACCTATGTTCACGAGAAGGTCTATGATGAATTTCTGGAGAAGGCAAAGGCACGCGCCTTGAAACGAGTAGTTGGTGATCCGTTTAAATCAGGCACTGAGCAGGGTCCTCAG.........................................................................................................................................................ATTGATTCAAAACAGTTCGATAAGATCATGAAGTACATTAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230761" ref_strand="+" ref_description="SGN-E230761 [cLEL-35-H22](-)">
      <seq>atgttaaggatgatatgctgattgcacaggatgagatttttggtccagtacagtccatcttaaaatttaaggatcttgatgaagtggtacggagagctaatagttctcggtatggtctagctgctggagtattttcacagaacatcgacactgcaaacacgttggcacgagccttgagagttgggacggtatggattaattgctttgatacgtttgatgctacaattccttttggtggctataagatgagtggtcagggaagagaaaagggagaatacggtctcaaaaattacttgcaagtaaaggcagttgtgacaccattgaagaatccagcatggttataaacataatcctcttaaagcaatttttacaaataaaactaaattatagtgatatcaagttgctctagttcatgatgttgataacgataaatgttgattttctttcaaaacttcttttatatacaaactgcatttgatgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13153" stop="14322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13366" g_stop="13373" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13374" i_stop="13458" i_length="85">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13459" g_stop="13520" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="70" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13521" i_stop="13608" i_length="88">
            <donor d_prob="0.741" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13609" g_stop="14021" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="483" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="484" polyA_stop="499"/>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E230761" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13366" e_stop="13373"/>
          <exon e_start="13459" e_stop="13520"/>
          <exon e_start="13609" e_stop="14021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTAAGGTATATACATTTTCACTTTAATAGGCGTGCTTTTTAGTATCAACGTCCATAAATTGTCATAACTAACAAATTGTACAATTGTCAGGATGATATGCTGATTGCACAGGATGAGATTTTTGGTCCAGTACAGTCCATCTTAAAATTTAAGTATGTGAGAACGATCAAATATATATGTTAACAGTACATGGAGCTGTATTATCGACTTCTATTTATGGTATGTATTTGTTCATTACAGGGATCTTGATGAAGTGGTACGGAGAGCTAATAGTTCTCGGTATGGTCTAGCTGCTGGAGTATTTTCACAGAACATCGACACTGCAAACACGTTGGCACGAGCCTTGAGAGTTGGGACGGTATGGATTAATTGCTTTGATACGTTTGATGCTACAATTCCTTTTGGTGGCTATAAGATGAGTGGTCAGGGAAGAGAAAAGGGAGAATACGGTCTCAAAAATTACTTGCAAGTAAAGGCAGTTGTGACACCATTGAAGAATCCAGCATGGTTATAAACATAATCCTCTTAAAGCAATTTTTACAAATAAAACTAAATTATAGTGATATCAAGTTGCTCTAGTTCATGATGTTGATAACGATAAATGTTGATTTTCTTTCAAAACTTCTTTTATATACAAACTGCATTTGATGTCA</genome_strand>
        <mrna_strand>ATGTTAAG.....................................................................................GATGATATGCTGATTGCACAGGATGAGATTTTTGGTCCAGTACAGTCCATCTTAAAATTTAA........................................................................................GGATCTTGATGAAGTGGTACGGAGAGCTAATAGTTCTCGGTATGGTCTAGCTGCTGGAGTATTTTCACAGAACATCGACACTGCAAACACGTTGGCACGAGCCTTGAGAGTTGGGACGGTATGGATTAATTGCTTTGATACGTTTGATGCTACAATTCCTTTTGGTGGCTATAAGATGAGTGGTCAGGGAAGAGAAAAGGGAGAATACGGTCTCAAAAATTACTTGCAAGTAAAGGCAGTTGTGACACCATTGAAGAATCCAGCATGGTTATAAACATAATCCTCTTAAAGCAATTTTTACAAATAAAACTAAATTATAGTGATATCAAGTTGCTCTAGTTCATGATGTTGATAACGATAAATGTTGATTTTCTTTCAAAACTTCTTTTATATACAAACTGCATTTGATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369897" ref_strand="+" ref_description="SGN-E369897 [TUS-26-L17](-)">
      <seq>aatttaaggatcttgatgaagtggtacggagagataatagttctcggtatggtctacaggtgggagtactttcaccgcacatcgacactgcaaacacgttggcacgagccttgagagttgggacggtatggattaattgctttgatacgtttgatgctacaattccttttggtggctataagatgagtggtcagagaagagaaaaggaagaatacggtctcaaaaattacttgcaagtaaaggcagttgtgacaccattgaagaatccagcatggttataaacataatcctcttaaagcaatttttacaaataaaactaaattatagtgatatcaagttgctctagttcatgatgttgataacgcataaatgttgattttctttcaaaacttcttttatataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13303" stop="14306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13514" g_stop="13520" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13521" i_stop="13608" i_length="88">
            <donor d_prob="0.741" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13609" g_stop="14016" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="416" r_length="409" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E369897" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13514" e_stop="13520"/>
          <exon e_start="13609" e_stop="14016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTAAGTATGTGAGAACGATCAAATATATATGTTAACAGTACATGGAGCTGTATTATCGACTTCTATTTATGGTATGTATTTGTTCATTACAGGGATCTTGATGAAGTGGTACGGAGAGCTAATAGTTCTCGGTATGGTCTAGCTGCTGGAGTATTTTCACAGAACATCGACACTGCAAACACGTTGGCACGAGCCTTGAGAGTTGGGACGGTATGGATTAATTGCTTTGATACGTTTGATGCTACAATTCCTTTTGGTGGCTATAAGATGAGTGGTCAGGGAAGAGAAAAGGGAGAATACGGTCTCAAAAATTACTTGCAAGTAAAGGCAGTTGTGACACCATTGAAGAATCCAGCATGGTTATAAACATAATCCTCTTAAAGCAATTTTTACAAATAAAACTAAATTATAGTGATATCAAGTTGCTCTAGTTCATGATGTTGATAACG-ATAAATGTTGATTTTCTTTCAAAACTTCTTTTATATACAAACTGCATTTGA</genome_strand>
        <mrna_strand>AATTTAA........................................................................................GGATCTTGATGAAGTGGTACGGAGAGATAATAGTTCTCGGTATGGTCTACAGGTGGGAGTACTTTCACCGCACATCGACACTGCAAACACGTTGGCACGAGCCTTGAGAGTTGGGACGGTATGGATTAATTGCTTTGATACGTTTGATGCTACAATTCCTTTTGGTGGCTATAAGATGAGTGGTCAGAGAAGAGAAAAGGAAGAATACGGTCTCAAAAATTACTTGCAAGTAAAGGCAGTTGTGACACCATTGAAGAATCCAGCATGGTTATAAACATAATCCTCTTAAAGCAATTTTTACAAATAAAACTAAATTATAGTGATATCAAGTTGCTCTAGTTCATGATGTTGATAACGCATAAATGTTGATTTTCTTTCAAAACTTCTTTTATATAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230575" ref_strand="+" ref_description="SGN-E230575 [cLEL-35-O14](-)">
      <seq>ggagtattttcacagaacatcgaacctgctaacacgttggcacgagccttgagagttgggacggtatggattaattgctttgatacgtttgatgctacaattccttttggtggctataagatgagtggtcagggaagagaaaagggagaatacggtctcaaaaattacttgcaagtaaaggcagttgtgacaccattgaagaatccagcatggttataaacataatcctcgtaaagcaatttttacaaataaatctaaattatagtgatatcaagttgctctagttcatgatgttgataacgataaatgttgattttctttcaaaacttcttttatatacaatctgcttttgtggtctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13364" stop="14322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13664" g_stop="14015" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="359" polyA_stop="374"/>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E230575" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13664" e_stop="14015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTATTTTCACAGAACATCGACACTGCAAACACGTTGGCACGAGCCTTGAGAGTTGGGACGGTATGGATTAATTGCTTTGATACGTTTGATGCTACAATTCCTTTTGGTGGCTATAAGATGAGTGGTCAGGGAAGAGAAAAGGGAGAATACGGTCTCAAAAATTACTTGCAAGTAAAGGCAGTTGTGACACCATTGAAGAATCCAGCATGGTTATAAACATAATCCTCTTAAAGCAATTTTTACAAATAAAACTAAATTATAGTGATATCAAGTTGCTCTAGTTCATGATGTTGATAACGATAAATGTTGATTTTCTTTCAAAACTTCTTTTATATACAAACTGCATTTG</genome_strand>
        <mrna_strand>GGAGTATTTTCACAGAACATCGAACCTGCTAACACGTTGGCACGAGCCTTGAGAGTTGGGACGGTATGGATTAATTGCTTTGATACGTTTGATGCTACAATTCCTTTTGGTGGCTATAAGATGAGTGGTCAGGGAAGAGAAAAGGGAGAATACGGTCTCAAAAATTACTTGCAAGTAAAGGCAGTTGTGACACCATTGAAGAATCCAGCATGGTTATAAACATAATCCTCGTAAAGCAATTTTTACAAATAAATCTAAATTATAGTGATATCAAGTTGCTCTAGTTCATGATGTTGATAACGATAAATGTTGATTTTCTTTCAAAACTTCTTTTATATACAATCTGCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230794" ref_strand="+" ref_description="SGN-E230794 [cLEL-35-O14](-)">
      <seq>ggtatggattaattgctttgatacgtttgatgctacaattccttttggtggctataagatgagtggtcagggaagagaaaagggagaatacggtctcaaaaattacttgcaagtaaaggcagttgtgacaccattgaagaatccagcatggttataaacataatcctcttaaagcaatttttacaaataaaactaaattatagtgatatcaagttgctctagttcatgatgttgataacgataaatgttgattttctttcaaaacttcttttatatacaaactgcatttgatgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13426" stop="14322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13726" g_stop="14021" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="297" polyA_stop="312"/>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E230794" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13726" e_stop="14021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATGGATTAATTGCTTTGATACGTTTGATGCTACAATTCCTTTTGGTGGCTATAAGATGAGTGGTCAGGGAAGAGAAAAGGGAGAATACGGTCTCAAAAATTACTTGCAAGTAAAGGCAGTTGTGACACCATTGAAGAATCCAGCATGGTTATAAACATAATCCTCTTAAAGCAATTTTTACAAATAAAACTAAATTATAGTGATATCAAGTTGCTCTAGTTCATGATGTTGATAACGATAAATGTTGATTTTCTTTCAAAACTTCTTTTATATACAAACTGCATTTGATGTCA</genome_strand>
        <mrna_strand>GGTATGGATTAATTGCTTTGATACGTTTGATGCTACAATTCCTTTTGGTGGCTATAAGATGAGTGGTCAGGGAAGAGAAAAGGGAGAATACGGTCTCAAAAATTACTTGCAAGTAAAGGCAGTTGTGACACCATTGAAGAATCCAGCATGGTTATAAACATAATCCTCTTAAAGCAATTTTTACAAATAAAACTAAATTATAGTGATATCAAGTTGCTCTAGTTCATGATGTTGATAACGATAAATGTTGATTTTCTTTCAAAACTTCTTTTATATACAAACTGCATTTGATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277890" ref_strand="+" ref_description="SGN-E277890 [cLEL-5-H5](-)">
      <seq>aaagtcctatcgtatcgaatcagaatatccttaatctccttcttcgtctgctcatcaacgtacttctggtagaaagcaacaagagcctttgcaattgactgacggatagcgtagatctgagaagtatgacctcctcctttgactcggattctcatgtcaactccggcgaatcgttgacgacctagaaggaggattggctcgaaagctttgtaccggagaatctccggctgaacaagctcgataggaactccgttgattttgatcaaaccacgaccacgcttgcagtgtgtcaccgccaccgccgtcttcttccgcccgaaacattgcacggactccactgtcgccggtgccgcctgcatttctcctgctttgattattttgcttagtctgatggccaaacctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="18741" stop="17739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18441" g_stop="18036" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E277890" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18441" e_stop="18036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCCTATCGTATCGAATCAGAATATCCTTAATCTCCTTCTTCGTCTGCTCATCAACGTACTTCTGGTAGAAAGCAACAAGAGCCTTTGCAATTGACTGACGGATAGCGTAGATCTGAGAAGTATGACCTCCTCCTTTGACTCGGATTCTCATGTCAACTCCGGCGAATCGTTGACGACCTAGAAGGAGGATTGGCTCGAAAGCTTTGTACCGGAGAATCTCCGGCTGAACAAGCTCGATAGGAACTCCGTTGATTTTGATCAAACCACGACCACGCTTGCAGTGTGTCACCGCCACCGCCGTCTTCTTCCGCCCGAAACATTGCACGGACTCCACTGTCGCCGGTGCCGCCTGCATTTCTCCTGCTTTGATTATTTTGCTTAGTCTGATGGCCAAA-CTCGAAA</genome_strand>
        <mrna_strand>AAAGTCCTATCGTATCGAATCAGAATATCCTTAATCTCCTTCTTCGTCTGCTCATCAACGTACTTCTGGTAGAAAGCAACAAGAGCCTTTGCAATTGACTGACGGATAGCGTAGATCTGAGAAGTATGACCTCCTCCTTTGACTCGGATTCTCATGTCAACTCCGGCGAATCGTTGACGACCTAGAAGGAGGATTGGCTCGAAAGCTTTGTACCGGAGAATCTCCGGCTGAACAAGCTCGATAGGAACTCCGTTGATTTTGATCAAACCACGACCACGCTTGCAGTGTGTCACCGCCACCGCCGTCTTCTTCCGCCCGAAACATTGCACGGACTCCACTGTCGCCGGTGCCGCCTGCATTTCTCCTGCTTTGATTATTTTGCTTAGTCTGATGGCCAAACCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342834" ref_strand="+" ref_description="SGN-E342834 [cTOF-7-D6]">
      <seq>tttggccatcagactaagcaaaataatcaaagcaggagaaatgcaggcggcaccggcgacagtggagtccgtgcaatgtttcgggcggaagaagacggcggtggcggtgacacactgcaagcgtggtcgtggtttgatcaaaatcaacggagttcctatcgagcttgttcagccggagattctccggtacaaagctttcgagccaatcctccttctaggtcgtcaacgattcgccggagttgacatgagaatccgagtcaaaggaggaggtcatacttctcagatctacgctatccgtcagtcaattgcaaaggctcttgttgctttctaccagaagtacgttgatgagcagacgaagaaggagattaaggatattctgattcgatacgataggactttgcttgttgctgatcctagacgttgtgagcctaagaagtttggtggtcgtggtgctcgttctaggttccagaaatcttaccgttaaatttacggtatatgttctattgctattggtgctctgcaattntgagtatggtttcgattttagggattattattattatctattcaccattaaagctatctgagtaagctttggattttgatgaaccgtaatgtagttgttttacggtggaatgattttatgttatgtatgcattgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17743" stop="19007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18043" g_stop="18711" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E342834" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18043" e_stop="18711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCCATCAGACTAAGCAAAATAATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATGAACCGTAATGTAGTTGTTTTACGGTGGAATGATTTTATGTTATGTATGCATTGAAATATGTT</genome_strand>
        <mrna_strand>TTTGGCCATCAGACTAAGCAAAATAATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTNTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATGAACCGTAATGTAGTTGTTTTACGGTGGAATGATTTTATGTTATGTATGCATTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336443" ref_strand="+" ref_description="SGN-E336443 [cTOE-4-E16]">
      <seq>gactaagcaaaataatcaaagcaggagaaatgcaggcggcaccggcgacagtggagtccgtgcaatgtttcgggcggaagaagacggcggtggcnnnccacactgcaagcgtggtcgtggtttgatcaaaatcaacggagttcctatcgagcttgttcagccggagattctccggtacaaagctttcgagccaatcctccttctaggtcgtcaacgattcgccggagttgacatgagaatccgagtcaaaggaggaggtcatacttctcagatctacgctatccgtcagtcaattgcaaaggctcttgttgctttctaccagaagtacgttgatgagcagacgaagaaggagatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17754" stop="18710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18054" g_stop="18410" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E336443" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18054" e_stop="18410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTAAGCAAAATAATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTA</genome_strand>
        <mrna_strand>GACTAAGCAAAATAATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGC-NNNCCACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312647" ref_strand="+" ref_description="SGN-E312647 [cLEZ-20-F6]">
      <seq>actaagcaaaataatcaaagcaggagaaatgccaggcggcaccggcgaacagtggagtccgtgccaatgtttcgggcggaagaagaacggcggtggcggtgaaacactgcaagcgtggtcgtggtttgatcaaaatcaacggagttcctatcgagcttgttcagccggagattctccggtacaaagctttcgagccaatcctccttctaggtcgtcaacgattcgccggagttgacatgagaatccgagtcaaaggaggaggtcatacttctcagatctacgctatccgtcagtcaattgcaaaggctcttgttgctttctaccagaagtacgttgatgagcagacgaagaaggagaataaggatattctgattcgatacgataggactttgcttgttgctgatcctagacgttgtgagcctaagaagtttggtggtcgtggtgctcgttctaggttccagaaatcttaccgttaaatttacggtatatgttctattgctattggtgctctgcaattttgagtatggtttcgattttagggattattattattatctattcaccattaaagctatctgagtaagctttggattttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17755" stop="18949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18055" g_stop="18649" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E312647" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18055" e_stop="18649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAGCAAAATAATCAAAGCAGGAGAAATG-CAGGCGGCACCGGCG-ACAGTGGAGTCCGTG-CAATGTTTCGGGCGGAAGAAGA-CGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATG</genome_strand>
        <mrna_strand>ACTAAGCAAAATAATCAAAGCAGGAGAAATGCCAGGCGGCACCGGCGAACAGTGGAGTCCGTGCCAATGTTTCGGGCGGAAGAAGAACGGCGGTGGCGGTGAAACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGAATAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373006" ref_strand="+" ref_description="SGN-E373006 [TUS-32-J7]">
      <seq>actaagcaaaataatcaaagcaggagaaatgcaggcggcaccggcgacagtggagtccgtgcaatgtttcgggcggaagaagacggcggtggcggtgacacactgcaagcgtggtcgtggtttgatcaaaatcaacggagttcctatcgagcttgttcagccggagattctccggtacaaagctttcgagccaatcctccttctaggtcgtcaacgattcgccggagttgacatgagaatccgagtcaaaggaggaggtcatacttctcagatctacgctatccgtcagtcaattgcaaaggctcttgttgctttctaccagaagtacgttgatgagcagacgaagaaggagattaaggatattctgattcgatacgataggactttgcttgttgctgatcctagacgttgtgagcctaagaagtttggtggtcgtggtgctcgttctaggttccagaaatcttaccgttaaatttacggtatatgttctattgctattggtgctctgcaattttgagtatggtttcgattttagggattattattattatctattcaccattaaagctatctgagtaagctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17755" stop="18940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18055" g_stop="18640" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E373006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18055" e_stop="18640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAGCAAAATAATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGG</genome_strand>
        <mrna_strand>ACTAAGCAAAATAATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293994" ref_strand="+" ref_description="SGN-E293994 [cLET-13-B10]">
      <seq>actaagcaaaataatcaaagcaggagaaatgcaggcggcaccggcgacagtggagtccgtgcaatgtttcgggcggaagaagacggcggtggcggtgacacactgcaagcgtggtcgtggtttgatcaaaatcaacggagttcctatcgagcttgttcagccggagattctccggtacaaagctttcgagccaatcctccttctaggtcgtcaacgattcgccggagttgacatgagaatccgagtcaaaggaggaggtcatacttctcagatctacgctatccgtcagtcaattgcaaaggctcttgttgctttctaccagaagtacgttgatgagcagacgaagaaggagattaaggatattctgattcgatacgataggactttgcttgttgctgatcctagacgttgtgagcctaagaagtttggtggtcgtggtgctcgttctaggttccagaaatcttaccgttaaatttacggtatatgttctattgctattggtgctctgcaattttgagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17755" stop="18876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18055" g_stop="18576" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E293994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18055" e_stop="18576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAGCAAAATAATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATG</genome_strand>
        <mrna_strand>ACTAAGCAAAATAATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342311" ref_strand="+" ref_description="SGN-E342311 [cTOF-8-O12]">
      <seq>ctaagcaaaataatcaaagcaggagaaatgcaggcggcaccggcgacagtggagtccgtgcaatgtttcgggcggaagaagacggcggtggcggtgacacactgcaagcgtggtcgtggtttgatcaaaatcaacggagttcctatcgagcttgttcagccggagattctccggtacaaagctttcgagccaatcctccttctaggtcgtcaacgattcgccggagttgacatgagaatccgagtcaaaggaggaggtcatacttctcagatctacgctatccgtcagtcaattgcaaaggctcttgttgctttctaccagaagtacgttgatgagcagacgaagaaggagattaaggatattctgattcgatacgataggactttgcttgttgctgatcctagacgttgtgagcctaagaagtttggtggtcgtggtgctcgttctaggttccagaaatcttaccgttaaatttacggtatatgttctattgctattggtgctctgcaattttgagtatggtttcgattttagggattattattattatctattcaccattaaagctatctgagtaagctttggattttgatgaaccgtaatgtagttgttttacggtggaatgattttatgttatgtatgcattgaaatatgtttttccaatgcataatataaacttatgctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17756" stop="19044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18056" g_stop="18739" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="685" polyA_stop="695"/>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E342311" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18056" e_stop="18739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGCAAAATAATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATGAACCGTAATGTAGTTGTTTTACGGTGGAATGATTTTATGTTATGTATGCATTGAAATATGTTTTTCCAATGCATAATATAAACTTATGCT</genome_strand>
        <mrna_strand>CTAAGCAAAATAATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATGAACCGTAATGTAGTTGTTTTACGGTGGAATGATTTTATGTTATGTATGCATTGAAATATGTTTTTCCAATGCATAATATAAACTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344930" ref_strand="+" ref_description="SGN-E344930 [cTOF-21-L14]">
      <seq>ctaagcaaaataatcaaagcaggagaaatgcaggcggcaccggcgacagtggagtccgtgcaatgtttcgggcggaagaagacggcggtggcggtgacacactgcaagcgtggtcgtggtttgatcaaaatcaacggagttcctatcgagcttgttcagccggagattctccggtacaaagctttcgagccaatcctccttctaggtcgtcaacgattcgccggagttgacatgagaatccgagtcaaaggaggaggtcatacttctcagatctacgctatccgtcagtcaattgcaaaggctcttgttgctttctaccagaagtacgttgatgagcagacgaagaaggagattaaggatattctgattcgatacgataggactttgcttgttgctgatcctagacgttgtgagcctaagaagtttggtggtcgtggtgctcgttctaggttccagaaatcttaccgttaaatttacggtatatgttctattgctattggtgctctgcaattttgagtatggtttcgattttagggattattattattatctattcaccattaaagctatctgagtaagctttggattttgatgaaccgtaatgtagttgttttacggtggaatgattttatgttatgtatgcattgaaatatgtttttccaatgcataatataaacttatgctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17756" stop="19044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18056" g_stop="18739" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="685" polyA_stop="697"/>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E344930" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18056" e_stop="18739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGCAAAATAATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATGAACCGTAATGTAGTTGTTTTACGGTGGAATGATTTTATGTTATGTATGCATTGAAATATGTTTTTCCAATGCATAATATAAACTTATGCT</genome_strand>
        <mrna_strand>CTAAGCAAAATAATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATGAACCGTAATGTAGTTGTTTTACGGTGGAATGATTTTATGTTATGTATGCATTGAAATATGTTTTTCCAATGCATAATATAAACTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362505" ref_strand="+" ref_description="SGN-E362505 [cLPP-1-C5]">
      <seq>caaaaccaaataaagcagctaaaatgcaggcggcaccggcgacagtggagtccgtgcaatgtttcgggcggaagaagacagcggtggcggtgacacactgcaagcgtggtcgcggtttgatcaaaatcaacggagttcctatcgagcttgttcagccggagattctccgatacaaagctttcgagccaatcctccttctatgtcgtcaacgatttgccggagttgacatgagaatccgcgtgaaaggaggaggtcatacttctcagatctacgctattcgtcagtcaattgcaaaggctcttgttgctttctaccagaagtacgttgatgagcagacgaagaaggagattaaggatattctgattcgatacgataggactttgcttgttgctgatcctagacgttgtgagcctaagaagtttggtggtcgtggtgctcgttctaggttccagaaatcttaccgttaatttacggtatctgttctattgctattggtgctatgcaggtttgagtatgggttccgtttaaggattattattattattattatcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17781" stop="18916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18061" g_stop="18618" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E362505" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18061" e_stop="18618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAT-AATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTA</genome_strand>
        <mrna_strand>CAAAACCAAATAAAGCAGCTAAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACAGCGGTGGCGGTGACACACTGCAAGCGTGGTCGCGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGATACAAAGCTTTCGAGCCAATCCTCCTTCTATGTCGTCAACGATTTGCCGGAGTTGACATGAGAATCCGCGTGAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATTCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTT-AATTTACGGTATCTGTTCTATTGCTATTGGTGCTATGCAGGTTTGAGTATGGGTTC-CGTTTAAGGATTATTATTATTAT-TATT-ATCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732199" ref_strand="+" ref_description="SGN-E732199 [LB01CB08]">
      <seq>aatataatcaaagcaggagaaatgcaggcggcaccggcgacagtggagtccgtgcaatgtttcgggcggaagaagacggcggtggcggtgacacactgcaagcgtggtcgtggtttgatcaaaatcaacggagttcctatcgagcttgttcagccggagattctccggtacaaagctttcgagccaatcctccttctaggtcgtcaacgattcgccggagttgacatgagaatccgagtcaaaggaggaggtcatacttctcagatctacgctatccgtcagtcaattgcaaaggctcttgttgctttctaccagaagtacgttgatgagcagacgaagaaggagattaaggatattctgattcgatacgataggactttgcttgttgctgatcctagacgttgtgagcctaagaagtttggtggtcgtggtgctcgttctaggttccagaaatcttaccgttaaatttacggtatatgttctattgctattggtgctctgcaattttgagtatggtttcgattttagggattattattattatctattcaccattaaagctatctgagtaagctttggattttgatgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17763" stop="18951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18062" g_stop="18662" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E732199" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18062" e_stop="18662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATGAACCGTAATGTAG</genome_strand>
        <mrna_strand>AATATAATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732613" ref_strand="+" ref_description="SGN-E732613 [LB02CF07]">
      <seq>aaataatcaaagcaggagaaatgcaggcggcaccggcgacagtggagtccgtgcaatgtttcgggcggaagaagacggcggtggcggtgacacactgcaagcgtggtcgtggtttgatcaaaatcaacggagttcctatcgagcttgttcagccggagattctccggtacaaagctttcgagccaatcctccttctaggtcgtcaacgattcgccggagttgacatgagaatccgagtcaaaggaggaggtcatacttctcagatctacgctatccgtcagtcaattgcaaaggctcttgttgctttctaccagaagtacgttgatgagcagacgaagaaggagattaaggatattctgattcgatacgataggactttgcttgttgctgatcctagacgttgtgagcctaagaagtttggtggtcgtggtgctcgttctaggttccagaaatcttaccgttaaatttacggtatatgttctattgctattggtgctctgcaattttgagtatggtttcgattttagggattattattattatctattcaccattaaagctatctgagtaagctttggattttgatgaaccgtaatgtagttgttttacggtggaatgattttatgttatgtatgcattgaaatatgtttttccaatgcataatataaacttatgctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17763" stop="19044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18063" g_stop="18739" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="678" polyA_stop="689"/>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E732613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18063" e_stop="18739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATGAACCGTAATGTAGTTGTTTTACGGTGGAATGATTTTATGTTATGTATGCATTGAAATATGTTTTTCCAATGCATAATATAAACTTATGCT</genome_strand>
        <mrna_strand>AAATAATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATGAACCGTAATGTAGTTGTTTTACGGTGGAATGATTTTATGTTATGTATGCATTGAAATATGTTTTTCCAATGCATAATATAAACTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302345" ref_strand="+" ref_description="SGN-E302345 [cLEW-27-C6]">
      <seq>aataatcaaagcaggagaaatgcaggcggcaccggcgacagtggagtccgtgcaatgtttcgggcggaagaagacggcggtggcggtgacacactgcaagcgtggtcgtggtttgatcaaaatcaacggagttcctatcgagcttgttcagccggagattctccggtacaaagctttcgagccaatcctccttctaggtcgtcaacgattcgccggagttgacatgagaatccgagtcaaaggaggaggtcatacttctcagatctacgctatccgtcagtcaattgcaaaggctcttgttgctttctaccagaagtacgttgatgagcagacgaagaaggagattaaggatattctgattcgatacgataggactttgcttgttgctgatcctagacgttgtgagcctaagaagtttggtggtcgtggtgctcgttctaggttccagaaatcttaccgttaaatttacggtatatgttctattgctattggtgctctgcaattttgagtatggtttcgattttagggattattattattatctattcaccattaaagctatctgagtaagctttggattttgatgaaccgtaatgtagttgttttacggtggaatgattttatgttatgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17764" stop="18997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18064" g_stop="18697" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E302345" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18064" e_stop="18697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATGAACCGTAATGTAGTTGTTTTACGGTGGAATGATTTTATGTTATGTATG</genome_strand>
        <mrna_strand>AATAATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATGAACCGTAATGTAGTTGTTTTACGGTGGAATGATTTTATGTTATGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713049" ref_strand="+" ref_description="SGN-E713049 [FB06CC11]">
      <seq>accggcgacagtggagtccgtgcaatgtttcgggcggaagaagacggcggtggcggtgacacactgcaagcgtggtcgtggtttgatcaaaatcaacggagttcctatcgagcttgttcagccggagattctccggtacaaagctttcgagccaatcctccttctaggtcgtcaacgattcgccggagttgacatgagaatccgagtcaaaggaggaggtcatacttctcagatctacgctatccgtcagtcaattgcaaaggctcttgttgctttctaccagaagtacgttgatgagcagacgaagaaggagattaaggatattctgattcgatacgataggactttgcttgttgctgatcctagacgttgtgagcctaagaagtttggtggtcgtggtgctcgttctaggttccagaaatcttaccgttaaatttacggtatatgttctattgctattggtgctctgcaattttgagtatggtttcgattttagggattattattattatctattcaccattaaagctatctgagtaagctttggattttgatgaaccgtaatgtagttgttttacggtggaatgattttatgttatgtatgcattgaaatatgtttttccaatgcataatataaacttatgctatacagtgttgttgcttgaaaanaaaanaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17794" stop="19059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18094" g_stop="18759" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="675" polyA_stop="691"/>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E713049" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18094" e_stop="18759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATGAACCGTAATGTAGTTGTTTTACGGTGGAATGATTTTATGTTATGTATGCATTGAAATATGTTTTTCCAATGCATAATATAAACTTATGCTATACAGTGTTGTTGCTTGAA</genome_strand>
        <mrna_strand>ACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATGAACCGTAATGTAGTTGTTTTACGGTGGAATGATTTTATGTTATGTATGCATTGAAATATGTTTTTCCAATGCATAATATAAACTTATGCTATACAGTGTTGTTGCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373005" ref_strand="+" ref_description="SGN-E373005 [TUS-32-J7](-)">
      <seq>gtccgtgcaatgtttcgggcgaaagaagacggcggtggcggtgacacactgcaagcgtggtcgtggtttgatcaaaatcaacggagttcctatcgagcttgttcagccggagattctccggtacaaagctttcgagccaatcctccttctaggtcgtcaacgattcgccggagttgacatgagaatccgagtcaaaggaggaggtcatacttctcagatctacgctatccgtcagtcaattgcaaaggctcttgttgctttctaccagaagtacgttgatgagcagacgaagaaggagattaaggatattctgattcgatacgataggactttgcttgttgctgatcctagacgttgtgagcctaagaagtttggtggtcgtggtgctcgttctaggttccagaaatcttaccgttaaatttacggtatatgttctattgctattggtgctctgcaattttgagtatggtttcgattttagggattattattattatctattcaccattaaagctatctgagtaagctttggattttgatgaaccgtaatgtagttgttttacggtggaatgattttatgttatgtatgcattgaaatatgtttttccaatgcataatataaacttatgctataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17809" stop="19044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18109" g_stop="18744" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E373005" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18109" e_stop="18744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATGAACCGTAATGTAGTTGTTTTACGGTGGAATGATTTTATGTTATGTATGCATTGAAATATGTTTTTCCAATGCATAATATAAACTTATGCTATACA</genome_strand>
        <mrna_strand>GTCCGTGCAATGTTTCGGGCGAAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATGAACCGTAATGTAGTTGTTTTACGGTGGAATGATTTTATGTTATGTATGCATTGAAATATGTTTTTCCAATGCATAATATAAACTTATGCTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689499" ref_strand="+" ref_description="SGN-E689499 [LH_Ea01B01]">
      <seq>catgtaagttagcaagaacgactcttcccttatggaggaacctttgtttgactaaattcattctatgatgtaaaaatctattgatctgagttcctaacatgttcaagaatcttacttagtggtattcaaatgaacttgtttgcattctccaaatattatatactatataatgggcatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="20744" stop="19880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20453" g_stop="20319" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20318" i_stop="20236" i_length="83">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20235" g_stop="20180" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="190" r_length="56" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E689499" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>191</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20453" e_stop="20319"/>
          <exon e_start="20235" e_stop="20180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTCGCATTAGCAAGAACGACTCTTCCCTTATGGAGGAACATCTGTTTGACTAAATTCATTCTATGATGTAAAAACTTATTGGTCTGAGTTCCTAACATGTTCAAGAATCTTACTTGGAGGTATTCAAATGAAATAATTTCTTTTTCTCTTTATATTTTCGAGTTTGCTAATCAAATTGATAAAGTCTAAAGATGCTAAATTGTGCAATAATTGAACTTGATTGCATTCTCCAAATATTATGTACTATATAATGGGCATATATAAATAAACA</genome_strand>
        <mrna_strand>CATGT-AAGTTAGCAAGAACGACTCTTCCCTTATGGAGGAACCTTTGTTTGACTAAATTCATTCTATGATGTAAAAATCTATTGATCTGAGTTCCTAACATGTTCAAGAATCTTACTTAGTGGTATTCAAATGAA...................................................................................CTTGTTTGCATTCTCCAAATATTATATACTATATAATGGGCATCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212233" ref_strand="+" ref_description="SGN-E212233 [cLEC-75-G6]">
      <seq>ttttagataaatcttcaggttctggactaatctctaaagagaaatattactatggtttctttaatgctgcactaaaattgcctgctcattttacatcaggagttgttgttgccttttatatgtcaaactcagatgtgtttccacacaaccatgatgaaatagactttgaattgcttggacatgagaagagaagggattgggttttacagacaaatctttatggaaatggaagtgttcacactggaagagaagaaaaattctacctatggtttgatccaactttggattttcatgattataccatcctttggaataatcatcacatagtatttctcgtggacaatgtaccagtaagagaagtggttcacaacacagcaatctcttcagtttacccatcaaagccaatgtcaactatattgacaatatgggatggatcagaatgggcaacacatggaggaaaataccctgtaaactataattatgcaccttttataacaacaatcaaaggtattgaattagaaagttgtgtaaaacaacaacaaaatacatgttctaagagaagtaatacttcaagtttggaccctgttgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="22039" stop="20315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21831" g_stop="21814" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21813" i_stop="21724" i_length="90">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21723" g_stop="21623" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="119" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21622" i_stop="21314" i_length="309">
            <donor d_prob="0.421" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21313" g_stop="21105" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="328" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21104" i_stop="20879" i_length="226">
            <donor d_prob="0.780" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20878" g_stop="20615" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="592" r_length="264" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E212233" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21831" e_stop="21814"/>
          <exon e_start="21723" e_stop="21623"/>
          <exon e_start="21313" e_stop="21105"/>
          <exon e_start="20878" e_stop="20615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGATAAATCTTCAGGTACACTACAACAATTTCATACATGTTTTTTTTTTGGCTTAGTTTATAACTTAGAGTATTAATAACATTTTTTATTTCGTCACTCCACAGGTTCTGGACTAATCTCTAAAGAGAAATATTACTATGGTTTCTTTAATGCTGCACTAAAATTGCCTGCTCATTTTACATCAGGAGTTGTTGTTGCCTTTTATGTAAGTTTCTATTTTATCCTTAATAATAATCGTGGTGTCTGGATTAATTCATATGTATACGAAGAATATTTTGTGTAACTCTGTCTATCAAGGCGTGGACATATTGGGAAACCTTTTTTTTTTTTTTGCCTTTGATGAACTGTTTTGAACATAAGATATCCTGGTTTTCAACTTACTTCATGCATGCCTGGTAATTAGTACTTCGTATGTCCGTATTCAAAGTACGACTTTTGAAATTTGTGATGTAAGAACAAAGTTTTTGTGGCTATAATTATCTCGTTAAGTATAATTTTTTTTTTCAATTTTCAGATGTCAAACTCAGATGTGTTTCCACACAACCATGATGAAATAGACTTTGAATTGCTTGGACATGAGAAGAGAAGGGATTGGGTTTTACAGACAAATCTTTATGGAAATGGAAGTGTTCACACTGGAAGAGAAGAAAAATTCTACCTATGGTTTGATCCAACTTTGGATTTTCATGATTATACCATCCTTTGGAATAATCATCACATAGTGTAAGTCCGTTTGTTTCAATTTATTTGTCTGATTTTCAAGACAAAGTAATGATATCATAATTCGCTTAAGTTTGAACTGATTATTGGCCTGCTTATTTATTAACCGAGTCCATTTCGAAGGATTGACATCTCTCCAACTAAGCTACACCCCATTATGTTTGGAAACTATGTATACTTTTATCTACTTGGTTTCAAAAGTTGACAATTTTATTGTAAATTTCAACAGATTTCTCGTGGACAATGTACCAGTAAGAGAAGTGGTTCACAACACAGCAATCTCTTCAGTTTACCCATCAAAGCCAATGTCAACTATATTGACAATATGGGATGGATCAGAATGGGCAACACATGGAGGAAAATACCCTGTAAACTATAATTATGCACCTTTTATAACAACAATCAAAGGTATTGAATTAGAAGGTTGTGTAAAACAACAACAAAATACATGTTCTAAGAGAAGTAGTACTTCAAGTTTGGACCCTGTTGATGG</genome_strand>
        <mrna_strand>TTTTAGATAAATCTTCAG..........................................................................................GTTCTGGACTAATCTCTAAAGAGAAATATTACTATGGTTTCTTTAATGCTGCACTAAAATTGCCTGCTCATTTTACATCAGGAGTTGTTGTTGCCTTTTAT.....................................................................................................................................................................................................................................................................................................................ATGTCAAACTCAGATGTGTTTCCACACAACCATGATGAAATAGACTTTGAATTGCTTGGACATGAGAAGAGAAGGGATTGGGTTTTACAGACAAATCTTTATGGAAATGGAAGTGTTCACACTGGAAGAGAAGAAAAATTCTACCTATGGTTTGATCCAACTTTGGATTTTCATGATTATACCATCCTTTGGAATAATCATCACATAGT..................................................................................................................................................................................................................................ATTTCTCGTGGACAATGTACCAGTAAGAGAAGTGGTTCACAACACAGCAATCTCTTCAGTTTACCCATCAAAGCCAATGTCAACTATATTGACAATATGGGATGGATCAGAATGGGCAACACATGGAGGAAAATACCCTGTAAACTATAATTATGCACCTTTTATAACAACAATCAAAGGTATTGAATTAGAAAGTTGTGTAAAACAACAACAAAATACATGTTCTAAGAGAAGTAATACTTCAAGTTTGGACCCTGTTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551125" ref_strand="+" ref_description="SGN-E551125 [TUS-55-G10]">
      <seq>tgaaagttcaagacccaagggctgcaggacaagtaagaggagaaaagattcaggcaacagctaaaacaggaaacaggcttcaggtttgcagatcatcattatctgcagtttttttcaaggaatgtactgtactcttatgtataccagccaggccaatggttgaaattctttaagcataaaggaaggtttgcaacatcctatcctataaacttcagggagcagactctgcaccaactctatctattgtttggagaatcgaaagacgctgttttgctctatgacttggtagaagtggcagactttgttccagcatatggcctctctttttgagtttacatacaacaaaaaggccttaatatgccgataagattgtggcatttggggttttatatatacagatttggttaggaggcaggcgtattagtttaaacagctgttgtacatagtanagcaagtttgaacagttaatgtcatctcatgtatatnagtttttatatagactagctttgctgttcgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="60585" stop="61705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60885" g_stop="61412" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E551125" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60885" e_stop="61412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGTTCAAGACCCAAGGGCTGCAGGACAAGTAAGAGGAGAAAAGATTCAGGCAACAGCTAAAACAGGAAACAGGCTTCAGGTTTGCAGATCATCATTATCTGCAGTTTTTTTCAAGGAATGTACTGTACTCTTATGTATACCAGCCAGGCCAATGGTTGAAATTCTTTAAGCATAAAGGAAGGTTTGCAACATCCTATCCTATAAACTTCAGGGAGCAGACTCTGCACCAACTCTATCTATTGTTTGGAGAATCGAAAGACGCTGTTTTGCTCTATGACTTGGTAGAAGTGGCAGACTTTGTTCCAGCATATGGCCTCTCTTTTTGAGTTTACATACAACAAAAAGGCCTTAATATGCCGATAAGATTGTGGCATTTGGGGTTTTATATATACAGATTTGGTTAGGAGGCAGGCGTATTAGTTTAAACAGCTGTTGTACATAGTAAAGCAAGTTTGAACAGTTAATGTCATCTCATGTATATAAGTTTTTATATAGACTAGCTTTGCTGTTCGTCAGATTACCTT</genome_strand>
        <mrna_strand>TGAAAGTTCAAGACCCAAGGGCTGCAGGACAAGTAAGAGGAGAAAAGATTCAGGCAACAGCTAAAACAGGAAACAGGCTTCAGGTTTGCAGATCATCATTATCTGCAGTTTTTTTCAAGGAATGTACTGTACTCTTATGTATACCAGCCAGGCCAATGGTTGAAATTCTTTAAGCATAAAGGAAGGTTTGCAACATCCTATCCTATAAACTTCAGGGAGCAGACTCTGCACCAACTCTATCTATTGTTTGGAGAATCGAAAGACGCTGTTTTGCTCTATGACTTGGTAGAAGTGGCAGACTTTGTTCCAGCATATGGCCTCTCTTTTTGAGTTTACATACAACAAAAAGGCCTTAATATGCCGATAAGATTGTGGCATTTGGGGTTTTATATATACAGATTTGGTTAGGAGGCAGGCGTATTAGTTTAAACAGCTGTTGTACATAGTANAGCAAGTTTGAACAGTTAATGTCATCTCATGTATATNAGTTTTTATATAGACTAGCTTTGCTGTTCGTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688931" ref_strand="+" ref_description="SGN-E688931 [t3_tus_55_G10]">
      <seq>tgaaagttcaagacccaagggctgcaggacaagtaagaggagaaaagattcaggcaacagctaaaacaggaaacaggcttcaggtttgcagatcatcattatctgcagtttttttcaaggaatgtactgtactcttatgtataccagccaggccaatggttgaaattctttaagcataaaggaaggtttgcaacatcctatcctataaacttcagggagcagactctgcaccaactctatctattgtttggagaatcgaaagacgctgttttgctctatgacttggtagaagtggcagactttgttccagcatatggcctctctttttgagtttacatacaacaaaaaggccttaatatgccgataagattgtggcatttggggttttatatatacagatttggttaggaggcaggcgtattagtttaaacagctgttgtacatagtanagcaagtttgaacagttaatgtcatctcatgtatatnagtttttatatagactagctttgctgttcgtcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="60585" stop="61705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60885" g_stop="61411" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E688931" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60885" e_stop="61411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGTTCAAGACCCAAGGGCTGCAGGACAAGTAAGAGGAGAAAAGATTCAGGCAACAGCTAAAACAGGAAACAGGCTTCAGGTTTGCAGATCATCATTATCTGCAGTTTTTTTCAAGGAATGTACTGTACTCTTATGTATACCAGCCAGGCCAATGGTTGAAATTCTTTAAGCATAAAGGAAGGTTTGCAACATCCTATCCTATAAACTTCAGGGAGCAGACTCTGCACCAACTCTATCTATTGTTTGGAGAATCGAAAGACGCTGTTTTGCTCTATGACTTGGTAGAAGTGGCAGACTTTGTTCCAGCATATGGCCTCTCTTTTTGAGTTTACATACAACAAAAAGGCCTTAATATGCCGATAAGATTGTGGCATTTGGGGTTTTATATATACAGATTTGGTTAGGAGGCAGGCGTATTAGTTTAAACAGCTGTTGTACATAGTAAAGCAAGTTTGAACAGTTAATGTCATCTCATGTATATAAGTTTTTATATAGACTAGCTTTGCTGTTCGTCAGATTACCT</genome_strand>
        <mrna_strand>TGAAAGTTCAAGACCCAAGGGCTGCAGGACAAGTAAGAGGAGAAAAGATTCAGGCAACAGCTAAAACAGGAAACAGGCTTCAGGTTTGCAGATCATCATTATCTGCAGTTTTTTTCAAGGAATGTACTGTACTCTTATGTATACCAGCCAGGCCAATGGTTGAAATTCTTTAAGCATAAAGGAAGGTTTGCAACATCCTATCCTATAAACTTCAGGGAGCAGACTCTGCACCAACTCTATCTATTGTTTGGAGAATCGAAAGACGCTGTTTTGCTCTATGACTTGGTAGAAGTGGCAGACTTTGTTCCAGCATATGGCCTCTCTTTTTGAGTTTACATACAACAAAAAGGCCTTAATATGCCGATAAGATTGTGGCATTTGGGGTTTTATATATACAGATTTGGTTAGGAGGCAGGCGTATTAGTTTAAACAGCTGTTGTACATAGTANAGCAAGTTTGAACAGTTAATGTCATCTCATGTATATNAGTTTTTATATAGACTAGCTTTGCTGTTCGTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261469" ref_strand="+" ref_description="SGN-E261469 [cLEG-57-N20]">
      <seq>aagttcaagacccaagggctgcaggacaagtaagaggagaaaagattcaggcaacagctaaaacaggaaacaggcttcaggtttgcagatcatcattatctgcagtttttttcaaggaatgtactgtactcttatgtataccagccaggccaatggttgaaattctttaagcataaaggaaggtttgcaacatcctatcctataaacttcagggagcagactctgcaccaactctatctattgtttggagaatcgaaagacgctgttttgctctatgacttggtagaagtggcagactttgttccagcatatggcctctctttttgagtttacatacaacaaaaaggccttaatatgccgataagattgtggcatttggggttttatatatacagatttggttaggaggcaggcgtattagtttaaacagctgttgtacatagtaaagcaagtttgaacagttaatgtcatctcatgtatataagtttttatatagactagctttgctgttcgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="60588" stop="61705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60888" g_stop="61412" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E261469" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60888" e_stop="61412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCAAGACCCAAGGGCTGCAGGACAAGTAAGAGGAGAAAAGATTCAGGCAACAGCTAAAACAGGAAACAGGCTTCAGGTTTGCAGATCATCATTATCTGCAGTTTTTTTCAAGGAATGTACTGTACTCTTATGTATACCAGCCAGGCCAATGGTTGAAATTCTTTAAGCATAAAGGAAGGTTTGCAACATCCTATCCTATAAACTTCAGGGAGCAGACTCTGCACCAACTCTATCTATTGTTTGGAGAATCGAAAGACGCTGTTTTGCTCTATGACTTGGTAGAAGTGGCAGACTTTGTTCCAGCATATGGCCTCTCTTTTTGAGTTTACATACAACAAAAAGGCCTTAATATGCCGATAAGATTGTGGCATTTGGGGTTTTATATATACAGATTTGGTTAGGAGGCAGGCGTATTAGTTTAAACAGCTGTTGTACATAGTAAAGCAAGTTTGAACAGTTAATGTCATCTCATGTATATAAGTTTTTATATAGACTAGCTTTGCTGTTCGTCAGATTACCTT</genome_strand>
        <mrna_strand>AAGTTCAAGACCCAAGGGCTGCAGGACAAGTAAGAGGAGAAAAGATTCAGGCAACAGCTAAAACAGGAAACAGGCTTCAGGTTTGCAGATCATCATTATCTGCAGTTTTTTTCAAGGAATGTACTGTACTCTTATGTATACCAGCCAGGCCAATGGTTGAAATTCTTTAAGCATAAAGGAAGGTTTGCAACATCCTATCCTATAAACTTCAGGGAGCAGACTCTGCACCAACTCTATCTATTGTTTGGAGAATCGAAAGACGCTGTTTTGCTCTATGACTTGGTAGAAGTGGCAGACTTTGTTCCAGCATATGGCCTCTCTTTTTGAGTTTACATACAACAAAAAGGCCTTAATATGCCGATAAGATTGTGGCATTTGGGGTTTTATATATACAGATTTGGTTAGGAGGCAGGCGTATTAGTTTAAACAGCTGTTGTACATAGTAAAGCAAGTTTGAACAGTTAATGTCATCTCATGTATATAAGTTTTTATATAGACTAGCTTTGCTGTTCGTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319350" ref_strand="+" ref_description="SGN-E319350 [cTOB-15-K13]">
      <seq>ttacggtctagtattcttggtttagcagcagcatcgatgttatagctctcttttactctcagagtcgaagcttttcctttcgtcttgctctcttttggagtggaattttcgtttttgatctctcgatgttgctgtagttgaatgaaattctaaatggcacggttagttattgattggagtacgctaatagacgacaagcctccggccgagttggtggtcgctactaaagcaactccgatgattagcatagacgacggggaagagcaaaatgacgagttttcaaacctaaggattgatgaactgactgaaaaaattaacaggttcaaaagtttgttgagcaccaaaggccctagattagttgacgggggcgagaaactgaaaacaacaataaaaaagtacgaggctgaatttgagaggagaaaattgctaaactccgataagggaacagatggatgtgccttattggggaggcatcactctagttctattggtgcagctaatggacctaggcagcggtctgcacaatcagcaccacgctcgcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88004" stop="85316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87704" g_stop="87264" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87263" i_stop="86068" i_length="1196">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86067" g_stop="86019" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="490" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86018" i_stop="85672" i_length="347">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85671" g_stop="85616" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="546" r_length="56" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E319350" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87704" e_stop="87264"/>
          <exon e_start="86067" e_stop="86019"/>
          <exon e_start="85671" e_stop="85616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACGGTCTAGTATTCTTGGTTTAGCAGCAGCATCGATGTTATAGCTCTCTTTTACTCTCAGAGTCGAAGCTTTTCCTTTCGTCTTGCTCTCTTTTGGAGTGGAATTTTCGTTTTTGATCTCTCGATGTTGCTGTAGTTGAATGAAATTCTAAATGGCACGGTTAGTTATTGATTGGAGTACGCTAATAGACGACAAGCCTCCGGCCGAGTTGGTGGTCGCTACTAAAGCAACTCCGATGATTAGCATAGACGACGGGGAAGAGCAAAATGACGAGTTTTCAAACCTAAGGATTGATGAACTGACTGAAAAAATTAACAGGTTCAAAAGTTTGTTGAGCACCAAAGGCCCTAGATTAGTTGACGGGGGCGAGAAACTGAAAACAACAATAAAAAAGTACGAGGCTGAATTTGAGAGGAGAAAATTGCTAAACTCCGATAAGGTGAGGTTCTTAATTAAATTTCGAGCAAAATGGATGTAGAGTATTCATACTGTCGAGTTCAATTAGTTATTTATTGTAATTTAGTTGTTATTGTAGTAGTATTGTTGCTTGAACATCTCTGGATTTTGTATATGTTTGAAGAATTCAGAAGAATTTTGAAACCCTATAAGGGTGCTGCTGAGTCTGTAGTGCCTACAGAACGCGAAATGGATTTTTGGAATTTATTAACATTCTCTAAAAAAGTTACTGGTAATGATCTCGTACTGAAATCATTAAATTTAACCCTCAATAATTTATTGTGCATTATACAAAGTATTTGAAATATAGGAAAGAAATACCATTGAAATATGAACTAATTTCTAAATCAACTTTTGCTTGAGAACTAGTGCAAAAATGTTTTGGTAAATATATTCGATTCATGTATTGACTCCACCTTGTGGAATTTCGAGGAAGGCAATGAATAACTATTAACTTAAGTAATAGCCTATTTGGCGAAGCTTCTAGGAGCATAAGGTGTTTATTTTCTTAAAAAGGTGCTTAATTTGAAGTGGAGTTAATTCCTCAAAAGTTCACTCTAGTTTAGGAAATTCTCTACCGAAATTACTTTTTCTTTAGTTTAGGACAATAAAATCACTGAATAATTCCTTTGTTCCTCAAGTATAATCGCTACCGGTTTAGACATTTAGGCACCATAAATGTTACTAGCATACCATATTTTATTAAATGTTTTCTTTATTTGGTTTGTTTGATCAAGACCCATTTAATTAAAAAATATTTCCTGCAGTATGCTATTTAACCTGGTTGTGGGCTATGTTGAACCACATTTTCATAGCAAATGTGGGGTTTATGTTACTCTGGTATGGATTGATAAGCAAAATCTGCATATTAGTATCTCACAACTATATGGCAGCATTTTAGAATTGCACAATTAGTGTCATCATTTGAGAAAGGCTTTCAAGACACTTGTGAAAATTCACATGAATTGAAAATACTTTTTTTCCCAATGATTTTTGTGGTTTTGATGCATAATCATAATGATGCTGTCAACCATGACAATTGTAGATAATACTTGATAAATGGATGCATAACCGTAGAAATGGCACAAAATTCTTATTTGGAAAGTGTGTTTCCTTGAACAAGCATTTGTCCATTGGTTTATGTAATTGGACATTATTTTCTTACACTATTTTTGACAGGGAACAGATGGATGTGCCTTATTGGGGAGGCATCACTCTAGTTCTATTGGTAAGTCTTTTTTTCTTTGTGTGTGGAGGGTAGGGGGTGACTATATTAATCTTTTCATTTATCCCAAAAAAAGGAAAGCGTTAAGCTTTTCTGTTGTCACAAGTTCTTCTACCAACTAAAGGATGTTCATTACTTGGGAAAACATAAATATATAAACGAGTTTCTAGCACTCAAAGTGTACTCACTGTTCACCTTGGAGGTCTTTAGTGCTGATTTTACCCACTGTTCACTCTTGTTTTATGTACAACGTATATGTGCAGCTACATGGAAGTTAGATGAGTAAAAGATTTGAGTTTCTTTACAAAATATTGTATGAAAGGAAACTAATGGTGGAGAAAATTTTGTAGGTGCAGCTAAT-GACCTAGGGCAGCGGTCTGCACAATCAGCACCACGCTCGCAATCT</genome_strand>
        <mrna_strand>TTACGGTCTAGTATTCTTGGTTTAGCAGCAGCATCGATGTTATAGCTCTCTTTTACTCTCAGAGTCGAAGCTTTTCCTTTCGTCTTGCTCTCTTTTGGAGTGGAATTTTCGTTTTTGATCTCTCGATGTTGCTGTAGTTGAATGAAATTCTAAATGGCACGGTTAGTTATTGATTGGAGTACGCTAATAGACGACAAGCCTCCGGCCGAGTTGGTGGTCGCTACTAAAGCAACTCCGATGATTAGCATAGACGACGGGGAAGAGCAAAATGACGAGTTTTCAAACCTAAGGATTGATGAACTGACTGAAAAAATTAACAGGTTCAAAAGTTTGTTGAGCACCAAAGGCCCTAGATTAGTTGACGGGGGCGAGAAACTGAAAACAACAATAAAAAAGTACGAGGCTGAATTTGAGAGGAGAAAATTGCTAAACTCCGATAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACAGATGGATGTGCCTTATTGGGGAGGCATCACTCTAGTTCTATTG...........................................................................................................................................................................................................................................................................................................................................................GTGCAGCTAATGGACCTA-GGCAGCGGTCTGCACAATCAGCACCACGCTCGCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298133" ref_strand="+" ref_description="SGN-E298133 [cLEW-9-I15]">
      <seq>cccaatgcagtgttttggggtaggttacggtctagtattcttggtttagcagcagcatcgatgttatagctctcttttactctcagagtcgaagcttttcctttcgtcttgctctcttttggagtggaattttcgtttttgatctctcgatgttgctgtagttgaatgaaattctaaatggcacggttagttattgattggagtacgctaatagacgacaagcctccggccgagatggtggtcgctactaaagcaactccgatgattagcatagacgacggtgaagagcaaaatgacgagntttcaaacctaaggattgatgaactgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88028" stop="87100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87728" g_stop="87400" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E298133" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87728" e_stop="87400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATGCAGTGTTTTGGGGTAGGTTACGGTCTAGTATTCTTGGTTTAGCAGCAGCATCGATGTTATAGCTCTCTTTTACTCTCAGAGTCGAAGCTTTTCCTTTCGTCTTGCTCTCTTTTGGAGTGGAATTTTCGTTTTTGATCTCTCGATGTTGCTGTAGTTGAATGAAATTCTAAATGGCACGGTTAGTTATTGATTGGAGTACGCTAATAGACGACAAGCCTCCGGCCGAGTTGGTGGTCGCTACTAAAGCAACTCCGATGATTAGCATAGACGACGGGGAAGAGCAAAATGACGAGTTTTCAAACCTAAGGATTGATGAACTGAC</genome_strand>
        <mrna_strand>CCCAATGCAGTGTTTTGGGGTAGGTTACGGTCTAGTATTCTTGGTTTAGCAGCAGCATCGATGTTATAGCTCTCTTTTACTCTCAGAGTCGAAGCTTTTCCTTTCGTCTTGCTCTCTTTTGGAGTGGAATTTTCGTTTTTGATCTCTCGATGTTGCTGTAGTTGAATGAAATTCTAAATGGCACGGTTAGTTATTGATTGGAGTACGCTAATAGACGACAAGCCTCCGGCCGAGATGGTGGTCGCTACTAAAGCAACTCCGATGATTAGCATAGACGACGGTGAAGAGCAAAATGACGAGNTTTCAAACCTAAGGATTGATGAACTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203415" ref_strand="+" ref_description="SGN-E203415 [cLEB-3-L14]">
      <seq>gcacgagctcactcccaaacccacaatcttcggctaccaatttccacatccatggcggattcagctccttcgccggaaaattccgccgtcgcaaattcacaaccactgacagaatctgacaacaaaacctcgcaatcagatccatctccggcaccgtcgttatcttcacctctgccaccacctccgccgttgatccagccttactccggtacacctccgtcgtttcgtccggcgacgccaccagcaccactacctggtgttggtgtagctcctatgttctcgcctcttcctaaccctaacttgcagcagcaaacattgaattttccgaatccttcggttcagcctcccggagtgaattctgtgccgccgtcgatgattccagcacctacagctggtgctggagctgtccagatgggttcggcgccgcaaattatgccaccttatgctatgcctggacagatggtgagaccatacgctcctatgcctaacggttaccatgctatgcctcaacctgctccacagggcgccatgattcatcccggaattccgcgttatgcatcaccgtacacacagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88705" stop="91246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89006" g_stop="89541" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="541" r_length="536" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89542" i_stop="90912" i_length="1371">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90913" g_stop="90946" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="575" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E203415" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89006" e_stop="89541"/>
          <exon e_start="90913" e_stop="90946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCACTCCCAAACCCACAATCTTCGGCTACCAATTTCCACATCCATGGCGGATTCAGCTCCTTCGCCGGAAAATTCCGCCGTCGCAAATTCACAACCACTGACAGAATCTGACAACAAAACCTCGCAATCAGATCCATCTCCGGCACCGTCGTTATCTTCACCTCTGCCACCACCTCCGCCGTTGATCCAGCCTTACTCCGGTACACCTCCGTCGTTTCGTCCGGCGACGCCACCAGCACCACTACCTGGTGTTGGTGTAGCTCCTATGTTCTCGCCTCTTCCTAACCCTAACTTGCAGCAGCAAACATTGAATTTTCCGAATCCTTCGGTTCAGCCTCCCGGAGTGAATTCTGTGCCGCCGTCGATGATTCCAGCACCTACAGCTGGTGCTGGAGCTGTCCAGATGGGTTCGGCGCCGCAAATTATGCCACCTTATGCTATGCCTGGACAGATGGTGAGACCATACGCTCCTATGCCTAACGGTTACCATGCTATGCCTCAACCTGCTCCACAGGGCGCCATGATTCATCCCGGTGGGTTTTTGTTTCTTTCTTATATGTACTGACAACTTGGGTATTTAGCAATTGATAGCTGAAATGATAGATTGTGCAGTGTATTATACACTTGTGTTGTTGTGATATCAAAAGGCGAAGTCTTTGTCGATTAATCTCTTAGGATAGTTACTTCAGATTTGTGGATTGTCAGCTCTAGATGCTGCAGTACTGGGATCTTAATAATAGCTTTGACTAAGTTTATTATTTAGAAATTATTCTGTTGAGACTGAACCACTACAAAATGTTATACATAAGTATGCTTGTTAAGGCTCTAGAAGAATCACTGAACTCTTATTTCTGATTACCATTTGAACCTCGCATTACTTAATAGTATATACGTTATAGATATAATTAGAGTATCAATGGCTAGCGTACTTCTGTCTTGTTGCTTTATTCTGTTGATATTGGGAGGGGAATATTATGGATGAGAGGAGTTTGCCATAGAATTGTATTAAAAATGGATAAGGGGTAACGATGACGGGATGTTTTCTCCTACAGTTTCTTGAATGGTTTCGGTGAGAAAGGTGGGAAGGCTTCATATTGCTGTTCATTAGAGACTACTGAGTACTCCAACTGCTTTTTTGGTATGAGCACGTTTGCTTGTTTTTGTTTTTATTTTCATTTATCATTACAAGGTCATTTGCTTTCGAGCACATCTATTTTCTGTGAAGTACCAAAAGTGGATCTTTCTCACCATGGACATATAATTTTCTATGTTATGTAATGTCTGAATATGCGTGTACTACAGTAGATTTACTTTTAGTAGTAAGGGTACTACCCCTTTGTTGGGATCTTGATTCTTGAAATGCTGGCAGCAGACCTTGTTAACAACTGAATGCAAGTAGCCTATACACCAAGGTATCACAATCTTTTCATTTTACCTGCTTGTGTTGTCCTTCCGGCTATTTTTCTGCTGTACATGATGATGTTAATGTTTGACATGTGGAAAGATTGTCTTAAAATACTTTATCATGCTATCAATTGCATTACTGATGATGAGACGCTGGAAGTCTCATCTTAATGTATTCAAACCTTGCAAATCATTCTTGGAATTTGGACAGTTAGATCAGATTTCTTTGCAAGTGGATGCATAAGGTAAGCCCTATTCACATGTTAGTGATTTATGAAATAGACGTTATTATCTTGATCCTTCAGGTTATCTGTTCAGCTCGTGAGTGTTCTCATGCCTATGGTGCCATCTCATAATGCTTGTAATGTTTGGTAATAACATTTGTTCAGCCTTACAGTTTTCTTTTGTGAATGAGACGTAGGTGTTGAGTGGTAGACTTGTCTCTGCTTTGTAAGCTTGGCCTAATAAATATTCCTAGACTCCTTTGTCCATTTATGCAGGAATTCCGCGTTATGCATCACCGTACACACAGAT</genome_strand>
        <mrna_strand>AGCTCACTCCCAAACCCACAATCTTCGGCTACCAATTTCCACATCCATGGCGGATTCAGCTCCTTCGCCGGAAAATTCCGCCGTCGCAAATTCACAACCACTGACAGAATCTGACAACAAAACCTCGCAATCAGATCCATCTCCGGCACCGTCGTTATCTTCACCTCTGCCACCACCTCCGCCGTTGATCCAGCCTTACTCCGGTACACCTCCGTCGTTTCGTCCGGCGACGCCACCAGCACCACTACCTGGTGTTGGTGTAGCTCCTATGTTCTCGCCTCTTCCTAACCCTAACTTGCAGCAGCAAACATTGAATTTTCCGAATCCTTCGGTTCAGCCTCCCGGAGTGAATTCTGTGCCGCCGTCGATGATTCCAGCACCTACAGCTGGTGCTGGAGCTGTCCAGATGGGTTCGGCGCCGCAAATTATGCCACCTTATGCTATGCCTGGACAGATGGTGAGACCATACGCTCCTATGCCTAACGGTTACCATGCTATGCCTCAACCTGCTCCACAGGGCGCCATGATTCATCCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCCGCGTTATGCATCACCGTACACACAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344135" ref_strand="+" ref_description="SGN-E344135 [cTOF-16-E4]">
      <seq>ccaaacccacaatcttcggctaccaatttccacatccatggcggattcagctccttcgccggaaaattccgccgtcgcaaattcacaaccactgacagaatctgacaacaaaacctcgcaatcagatccatctccggcaccgtcgttatcttcacctctgccaccacctccgccgttgatccagccttactccggtacacctccgtcgtttcgtccggcgacgccaccagcaccactacctggtgttggtgtagctcctatgttctcgcctcttcctaaccctaacttgcagcagcaaacattgaattttccgaatccttcggttcagcctcccggagtgaattctgtgccgccgtcgatgattccagcacctacagctggtgctggagctgtccagatgggttcggcgccgcaaattatgccaccttatgctatgcctggacagatggtgagaccatacgctcctatgcctaacggttaccatgctatgcctcaacctgctccacagggcgccatgattcatcccgtttcttgaatggtttcggtgagaaaggtgggaaggcttcatattgctgttcattagagactactgagtactccaactgcttttttggtatgagcacgtttgcttgtttttgtttttattttcatttatcattacaaggtcatttgctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88715" stop="90510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89015" g_stop="89541" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89542" i_stop="90060" i_length="519">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90061" g_stop="90210" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="677" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E344135" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89015" e_stop="89541"/>
          <exon e_start="90061" e_stop="90210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAACCCACAATCTTCGGCTACCAATTTCCACATCCATGGCGGATTCAGCTCCTTCGCCGGAAAATTCCGCCGTCGCAAATTCACAACCACTGACAGAATCTGACAACAAAACCTCGCAATCAGATCCATCTCCGGCACCGTCGTTATCTTCACCTCTGCCACCACCTCCGCCGTTGATCCAGCCTTACTCCGGTACACCTCCGTCGTTTCGTCCGGCGACGCCACCAGCACCACTACCTGGTGTTGGTGTAGCTCCTATGTTCTCGCCTCTTCCTAACCCTAACTTGCAGCAGCAAACATTGAATTTTCCGAATCCTTCGGTTCAGCCTCCCGGAGTGAATTCTGTGCCGCCGTCGATGATTCCAGCACCTACAGCTGGTGCTGGAGCTGTCCAGATGGGTTCGGCGCCGCAAATTATGCCACCTTATGCTATGCCTGGACAGATGGTGAGACCATACGCTCCTATGCCTAACGGTTACCATGCTATGCCTCAACCTGCTCCACAGGGCGCCATGATTCATCCCGGTGGGTTTTTGTTTCTTTCTTATATGTACTGACAACTTGGGTATTTAGCAATTGATAGCTGAAATGATAGATTGTGCAGTGTATTATACACTTGTGTTGTTGTGATATCAAAAGGCGAAGTCTTTGTCGATTAATCTCTTAGGATAGTTACTTCAGATTTGTGGATTGTCAGCTCTAGATGCTGCAGTACTGGGATCTTAATAATAGCTTTGACTAAGTTTATTATTTAGAAATTATTCTGTTGAGACTGAACCACTACAAAATGTTATACATAAGTATGCTTGTTAAGGCTCTAGAAGAATCACTGAACTCTTATTTCTGATTACCATTTGAACCTCGCATTACTTAATAGTATATACGTTATAGATATAATTAGAGTATCAATGGCTAGCGTACTTCTGTCTTGTTGCTTTATTCTGTTGATATTGGGAGGGGAATATTATGGATGAGAGGAGTTTGCCATAGAATTGTATTAAAAATGGATAAGGGGTAACGATGACGGGATGTTTTCTCCTACAGTTTCTTGAATGGTTTCGGTGAGAAAGGTGGGAAGGCTTCATATTGCTGTTCATTAGAGACTACTGAGTACTCCAACTGCTTTTTTGGTATGAGCACGTTTGCTTGTTTTTGTTTTTATTTTCATTTATCATTACAAGGTCATTTGCTTTC</genome_strand>
        <mrna_strand>CCAAACCCACAATCTTCGGCTACCAATTTCCACATCCATGGCGGATTCAGCTCCTTCGCCGGAAAATTCCGCCGTCGCAAATTCACAACCACTGACAGAATCTGACAACAAAACCTCGCAATCAGATCCATCTCCGGCACCGTCGTTATCTTCACCTCTGCCACCACCTCCGCCGTTGATCCAGCCTTACTCCGGTACACCTCCGTCGTTTCGTCCGGCGACGCCACCAGCACCACTACCTGGTGTTGGTGTAGCTCCTATGTTCTCGCCTCTTCCTAACCCTAACTTGCAGCAGCAAACATTGAATTTTCCGAATCCTTCGGTTCAGCCTCCCGGAGTGAATTCTGTGCCGCCGTCGATGATTCCAGCACCTACAGCTGGTGCTGGAGCTGTCCAGATGGGTTCGGCGCCGCAAATTATGCCACCTTATGCTATGCCTGGACAGATGGTGAGACCATACGCTCCTATGCCTAACGGTTACCATGCTATGCCTCAACCTGCTCCACAGGGCGCCATGATTCATCCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTGAATGGTTTCGGTGAGAAAGGTGGGAAGGCTTCATATTGCTGTTCATTAGAGACTACTGAGTACTCCAACTGCTTTTTTGGTATGAGCACGTTTGCTTGTTTTTGTTTTTATTTTCATTTATCATTACAAGGTCATTTGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337808" ref_strand="+" ref_description="SGN-E337808 [cTOE-17-F10]">
      <seq>aaacccacaatcttcggctaccaatttccacattcatggcggattcagctccttcgccggaaaattccgccgtcgcaaattcacaaccactgacagaatctgacaacaaaacctcgcaatcagatccatctccggcaccgtcgttatcttcacctctgccaccacctccgccgttgatccagccttactccggtacacctccgtcgtttcgtccggcgacgccaccagcaccactacctggtgttggtgtagctcctatgttctcgcctcttcctaaccctaacttgcagcagcaaacattgaattttccgaatccttcggttcagcctcccggagtgaattctgtgccgccgtcgatgattccagcacctacagctggtgctggagctgtccagatgggttcggcgccgcaaattatgccaccttatgctatgcctggacagatggtgagaccatacgctcctatgcctaacggttaccatgctatgcctcaacctgctccacagggcgccatgattcatcccggaattccgcgttatgcatcaccgtacacacagatggctcgaccagtttttcctccacgcccacttggtgcagttggcattattcctcccttgatgcgccctccaatccctatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88717" stop="91329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89017" g_stop="89541" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89542" i_stop="90912" i_length="1371">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90913" g_stop="91029" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="642" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E337808" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89017" e_stop="89541"/>
          <exon e_start="90913" e_stop="91029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCACAATCTTCGGCTACCAATTTCCACATCCATGGCGGATTCAGCTCCTTCGCCGGAAAATTCCGCCGTCGCAAATTCACAACCACTGACAGAATCTGACAACAAAACCTCGCAATCAGATCCATCTCCGGCACCGTCGTTATCTTCACCTCTGCCACCACCTCCGCCGTTGATCCAGCCTTACTCCGGTACACCTCCGTCGTTTCGTCCGGCGACGCCACCAGCACCACTACCTGGTGTTGGTGTAGCTCCTATGTTCTCGCCTCTTCCTAACCCTAACTTGCAGCAGCAAACATTGAATTTTCCGAATCCTTCGGTTCAGCCTCCCGGAGTGAATTCTGTGCCGCCGTCGATGATTCCAGCACCTACAGCTGGTGCTGGAGCTGTCCAGATGGGTTCGGCGCCGCAAATTATGCCACCTTATGCTATGCCTGGACAGATGGTGAGACCATACGCTCCTATGCCTAACGGTTACCATGCTATGCCTCAACCTGCTCCACAGGGCGCCATGATTCATCCCGGTGGGTTTTTGTTTCTTTCTTATATGTACTGACAACTTGGGTATTTAGCAATTGATAGCTGAAATGATAGATTGTGCAGTGTATTATACACTTGTGTTGTTGTGATATCAAAAGGCGAAGTCTTTGTCGATTAATCTCTTAGGATAGTTACTTCAGATTTGTGGATTGTCAGCTCTAGATGCTGCAGTACTGGGATCTTAATAATAGCTTTGACTAAGTTTATTATTTAGAAATTATTCTGTTGAGACTGAACCACTACAAAATGTTATACATAAGTATGCTTGTTAAGGCTCTAGAAGAATCACTGAACTCTTATTTCTGATTACCATTTGAACCTCGCATTACTTAATAGTATATACGTTATAGATATAATTAGAGTATCAATGGCTAGCGTACTTCTGTCTTGTTGCTTTATTCTGTTGATATTGGGAGGGGAATATTATGGATGAGAGGAGTTTGCCATAGAATTGTATTAAAAATGGATAAGGGGTAACGATGACGGGATGTTTTCTCCTACAGTTTCTTGAATGGTTTCGGTGAGAAAGGTGGGAAGGCTTCATATTGCTGTTCATTAGAGACTACTGAGTACTCCAACTGCTTTTTTGGTATGAGCACGTTTGCTTGTTTTTGTTTTTATTTTCATTTATCATTACAAGGTCATTTGCTTTCGAGCACATCTATTTTCTGTGAAGTACCAAAAGTGGATCTTTCTCACCATGGACATATAATTTTCTATGTTATGTAATGTCTGAATATGCGTGTACTACAGTAGATTTACTTTTAGTAGTAAGGGTACTACCCCTTTGTTGGGATCTTGATTCTTGAAATGCTGGCAGCAGACCTTGTTAACAACTGAATGCAAGTAGCCTATACACCAAGGTATCACAATCTTTTCATTTTACCTGCTTGTGTTGTCCTTCCGGCTATTTTTCTGCTGTACATGATGATGTTAATGTTTGACATGTGGAAAGATTGTCTTAAAATACTTTATCATGCTATCAATTGCATTACTGATGATGAGACGCTGGAAGTCTCATCTTAATGTATTCAAACCTTGCAAATCATTCTTGGAATTTGGACAGTTAGATCAGATTTCTTTGCAAGTGGATGCATAAGGTAAGCCCTATTCACATGTTAGTGATTTATGAAATAGACGTTATTATCTTGATCCTTCAGGTTATCTGTTCAGCTCGTGAGTGTTCTCATGCCTATGGTGCCATCTCATAATGCTTGTAATGTTTGGTAATAACATTTGTTCAGCCTTACAGTTTTCTTTTGTGAATGAGACGTAGGTGTTGAGTGGTAGACTTGTCTCTGCTTTGTAAGCTTGGCCTAATAAATATTCCTAGACTCCTTTGTCCATTTATGCAGGAATTCCGCGTTATGCATCACCGTACACACAGATGGCTCGACCAGTTTTTCCTCCACGCCCACTTGGTGCAGTTGGCATTATTCCTCCCTTGATGCGCCCTCCAATCCCTATGATGC</genome_strand>
        <mrna_strand>AAACCCACAATCTTCGGCTACCAATTTCCACATTCATGGCGGATTCAGCTCCTTCGCCGGAAAATTCCGCCGTCGCAAATTCACAACCACTGACAGAATCTGACAACAAAACCTCGCAATCAGATCCATCTCCGGCACCGTCGTTATCTTCACCTCTGCCACCACCTCCGCCGTTGATCCAGCCTTACTCCGGTACACCTCCGTCGTTTCGTCCGGCGACGCCACCAGCACCACTACCTGGTGTTGGTGTAGCTCCTATGTTCTCGCCTCTTCCTAACCCTAACTTGCAGCAGCAAACATTGAATTTTCCGAATCCTTCGGTTCAGCCTCCCGGAGTGAATTCTGTGCCGCCGTCGATGATTCCAGCACCTACAGCTGGTGCTGGAGCTGTCCAGATGGGTTCGGCGCCGCAAATTATGCCACCTTATGCTATGCCTGGACAGATGGTGAGACCATACGCTCCTATGCCTAACGGTTACCATGCTATGCCTCAACCTGCTCCACAGGGCGCCATGATTCATCCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCCGCGTTATGCATCACCGTACACACAGATGGCTCGACCAGTTTTTCCTCCACGCCCACTTGGTGCAGTTGGCATTATTCCTCCCTTGATGCGCCCTCCAATCCCTATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331368" ref_strand="+" ref_description="SGN-E331368 [cTOD-9-C18]">
      <seq>caatcttcggctaccaatttccacatccatggcggattcagctccttcgccggaaaattccgccgtcgcaaattcacaaccactgacagaatctgacaacaaaacctcgcaatcagatccatctccggcaccgtcgttatcttcacctctgccaccacctccgccgttgatccagccttactccggtacacctccgtcgtttcgtccggcgacgccaccagcaccactacctggtgttggtgtagctcctatgttctcgcctcttcctaaccctaacttgcagcagcaaacattgaattttccgaatccttcggttcagcctcccggagtgaattctgtgccgccgtcgatgattccagcacctacagctggtgctggagctgtccagatgggttcggcgccgcaaattatgccaccttatgctatgcctggacagatggtgagaccatacgctcctatgcctaacggttaccatgctatgcctcaacctgctccacagggcgccatgattcatcccggaattccgcgttatgcatcaccgtacacacagatggctcgaccagtttttcctccacgcccacttggtgcagttggcattattcctcccttgatgcgccctccaatccctatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88724" stop="91329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89024" g_stop="89541" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89542" i_stop="90912" i_length="1371">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90913" g_stop="91029" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="635" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E331368" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89024" e_stop="89541"/>
          <exon e_start="90913" e_stop="91029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTTCGGCTACCAATTTCCACATCCATGGCGGATTCAGCTCCTTCGCCGGAAAATTCCGCCGTCGCAAATTCACAACCACTGACAGAATCTGACAACAAAACCTCGCAATCAGATCCATCTCCGGCACCGTCGTTATCTTCACCTCTGCCACCACCTCCGCCGTTGATCCAGCCTTACTCCGGTACACCTCCGTCGTTTCGTCCGGCGACGCCACCAGCACCACTACCTGGTGTTGGTGTAGCTCCTATGTTCTCGCCTCTTCCTAACCCTAACTTGCAGCAGCAAACATTGAATTTTCCGAATCCTTCGGTTCAGCCTCCCGGAGTGAATTCTGTGCCGCCGTCGATGATTCCAGCACCTACAGCTGGTGCTGGAGCTGTCCAGATGGGTTCGGCGCCGCAAATTATGCCACCTTATGCTATGCCTGGACAGATGGTGAGACCATACGCTCCTATGCCTAACGGTTACCATGCTATGCCTCAACCTGCTCCACAGGGCGCCATGATTCATCCCGGTGGGTTTTTGTTTCTTTCTTATATGTACTGACAACTTGGGTATTTAGCAATTGATAGCTGAAATGATAGATTGTGCAGTGTATTATACACTTGTGTTGTTGTGATATCAAAAGGCGAAGTCTTTGTCGATTAATCTCTTAGGATAGTTACTTCAGATTTGTGGATTGTCAGCTCTAGATGCTGCAGTACTGGGATCTTAATAATAGCTTTGACTAAGTTTATTATTTAGAAATTATTCTGTTGAGACTGAACCACTACAAAATGTTATACATAAGTATGCTTGTTAAGGCTCTAGAAGAATCACTGAACTCTTATTTCTGATTACCATTTGAACCTCGCATTACTTAATAGTATATACGTTATAGATATAATTAGAGTATCAATGGCTAGCGTACTTCTGTCTTGTTGCTTTATTCTGTTGATATTGGGAGGGGAATATTATGGATGAGAGGAGTTTGCCATAGAATTGTATTAAAAATGGATAAGGGGTAACGATGACGGGATGTTTTCTCCTACAGTTTCTTGAATGGTTTCGGTGAGAAAGGTGGGAAGGCTTCATATTGCTGTTCATTAGAGACTACTGAGTACTCCAACTGCTTTTTTGGTATGAGCACGTTTGCTTGTTTTTGTTTTTATTTTCATTTATCATTACAAGGTCATTTGCTTTCGAGCACATCTATTTTCTGTGAAGTACCAAAAGTGGATCTTTCTCACCATGGACATATAATTTTCTATGTTATGTAATGTCTGAATATGCGTGTACTACAGTAGATTTACTTTTAGTAGTAAGGGTACTACCCCTTTGTTGGGATCTTGATTCTTGAAATGCTGGCAGCAGACCTTGTTAACAACTGAATGCAAGTAGCCTATACACCAAGGTATCACAATCTTTTCATTTTACCTGCTTGTGTTGTCCTTCCGGCTATTTTTCTGCTGTACATGATGATGTTAATGTTTGACATGTGGAAAGATTGTCTTAAAATACTTTATCATGCTATCAATTGCATTACTGATGATGAGACGCTGGAAGTCTCATCTTAATGTATTCAAACCTTGCAAATCATTCTTGGAATTTGGACAGTTAGATCAGATTTCTTTGCAAGTGGATGCATAAGGTAAGCCCTATTCACATGTTAGTGATTTATGAAATAGACGTTATTATCTTGATCCTTCAGGTTATCTGTTCAGCTCGTGAGTGTTCTCATGCCTATGGTGCCATCTCATAATGCTTGTAATGTTTGGTAATAACATTTGTTCAGCCTTACAGTTTTCTTTTGTGAATGAGACGTAGGTGTTGAGTGGTAGACTTGTCTCTGCTTTGTAAGCTTGGCCTAATAAATATTCCTAGACTCCTTTGTCCATTTATGCAGGAATTCCGCGTTATGCATCACCGTACACACAGATGGCTCGACCAGTTTTTCCTCCACGCCCACTTGGTGCAGTTGGCATTATTCCTCCCTTGATGCGCCCTCCAATCCCTATGATGC</genome_strand>
        <mrna_strand>CAATCTTCGGCTACCAATTTCCACATCCATGGCGGATTCAGCTCCTTCGCCGGAAAATTCCGCCGTCGCAAATTCACAACCACTGACAGAATCTGACAACAAAACCTCGCAATCAGATCCATCTCCGGCACCGTCGTTATCTTCACCTCTGCCACCACCTCCGCCGTTGATCCAGCCTTACTCCGGTACACCTCCGTCGTTTCGTCCGGCGACGCCACCAGCACCACTACCTGGTGTTGGTGTAGCTCCTATGTTCTCGCCTCTTCCTAACCCTAACTTGCAGCAGCAAACATTGAATTTTCCGAATCCTTCGGTTCAGCCTCCCGGAGTGAATTCTGTGCCGCCGTCGATGATTCCAGCACCTACAGCTGGTGCTGGAGCTGTCCAGATGGGTTCGGCGCCGCAAATTATGCCACCTTATGCTATGCCTGGACAGATGGTGAGACCATACGCTCCTATGCCTAACGGTTACCATGCTATGCCTCAACCTGCTCCACAGGGCGCCATGATTCATCCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCCGCGTTATGCATCACCGTACACACAGATGGCTCGACCAGTTTTTCCTCCACGCCCACTTGGTGCAGTTGGCATTATTCCTCCCTTGATGCGCCCTCCAATCCCTATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331364" ref_strand="+" ref_description="SGN-E331364 [cTOD-9-C10]">
      <seq>caatcttcggctaccaatttccacatccatgggggattcggctccttcgccggaaaattccgccctcncaaattcacaaccactgacagaatctgacaacaaaacctcgcaatcagatccatctccggcaccgtcgttatcttcacctctgccaccacctccgccgttgatccagccttactccggtacacctccgtcgtttcgtccggcgacgccaccagcaccactacctggtgttggtgtagctcctatgttctcgcctcttcctaaccctaacttgcagcagcaaacattgaattttccgaatccttcggttcaacctcccggagtgaattctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="88724" stop="89662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89024" g_stop="89362" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E331364" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89024" e_stop="89362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTTCGGCTACCAATTTCCACATCCATGGCGGATTCAGCTCCTTCGCCGGAAAATTCCGCCGTCGCAAATTCACAACCACTGACAGAATCTGACAACAAAACCTCGCAATCAGATCCATCTCCGGCACCGTCGTTATCTTCACCTCTGCCACCACCTCCGCCGTTGATCCAGCCTTACTCCGGTACACCTCCGTCGTTTCGTCCGGCGACGCCACCAGCACCACTACCTGGTGTTGGTGTAGCTCCTATGTTCTCGCCTCTTCCTAACCCTAACTTGCAGCAGCAAACATTGAATTTTCCGAATCCTTCGGTTCAGCCTCCCGGAGTGAATTCTGT</genome_strand>
        <mrna_strand>CAATCTTCGGCTACCAATTTCCACATCCATGGGGGATTCGGCTCCTTCGCCGGAAAATTCCGCCCTCNCAAATTCACAACCACTGACAGAATCTGACAACAAAACCTCGCAATCAGATCCATCTCCGGCACCGTCGTTATCTTCACCTCTGCCACCACCTCCGCCGTTGATCCAGCCTTACTCCGGTACACCTCCGTCGTTTCGTCCGGCGACGCCACCAGCACCACTACCTGGTGTTGGTGTAGCTCCTATGTTCTCGCCTCTTCCTAACCCTAACTTGCAGCAGCAAACATTGAATTTTCCGAATCCTTCGGTTCAACCTCCCGGAGTGAATTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358722" ref_strand="+" ref_description="SGN-E358722 [cLHT-24-A9]">
      <seq>atacgctcctatgcctaatggttaccatgctatgcctcaacctgctccacagggcgccatgattcatcccggaattccgcgttatgcatcaccgtacacacagatggctcgaccagtttttcctccacgcccacttggtgcaattggcattattcctcccttgatgcgccctccaatccctatgatgcgtcctccaatcattcctcctgttgccaggccagctgccatcccaagcattactcaaacagagaaaccacaaacaacagtttatgttggcaagatatcgtccactgcagaaaatgagtttatgctttctcttttgcagctctgcgggcctgttaggagttggaagcgtgctcaagatccgactaatggatcactgaaaggttttgggttttgtgagtttgagtctgctgagggggttctccgtgcattaagattgctcaacaaattaaacatcgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="89171" stop="91740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89471" g_stop="89541" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89542" i_stop="90912" i_length="1371">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90913" g_stop="91166" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="325" r_length="254" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91167" i_stop="91300" i_length="134">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91301" g_stop="91440" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="465" r_length="140" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E358722" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89471" e_stop="89541"/>
          <exon e_start="90913" e_stop="91166"/>
          <exon e_start="91301" e_stop="91440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACGCTCCTATGCCTAACGGTTACCATGCTATGCCTCAACCTGCTCCACAGGGCGCCATGATTCATCCCGGTGGGTTTTTGTTTCTTTCTTATATGTACTGACAACTTGGGTATTTAGCAATTGATAGCTGAAATGATAGATTGTGCAGTGTATTATACACTTGTGTTGTTGTGATATCAAAAGGCGAAGTCTTTGTCGATTAATCTCTTAGGATAGTTACTTCAGATTTGTGGATTGTCAGCTCTAGATGCTGCAGTACTGGGATCTTAATAATAGCTTTGACTAAGTTTATTATTTAGAAATTATTCTGTTGAGACTGAACCACTACAAAATGTTATACATAAGTATGCTTGTTAAGGCTCTAGAAGAATCACTGAACTCTTATTTCTGATTACCATTTGAACCTCGCATTACTTAATAGTATATACGTTATAGATATAATTAGAGTATCAATGGCTAGCGTACTTCTGTCTTGTTGCTTTATTCTGTTGATATTGGGAGGGGAATATTATGGATGAGAGGAGTTTGCCATAGAATTGTATTAAAAATGGATAAGGGGTAACGATGACGGGATGTTTTCTCCTACAGTTTCTTGAATGGTTTCGGTGAGAAAGGTGGGAAGGCTTCATATTGCTGTTCATTAGAGACTACTGAGTACTCCAACTGCTTTTTTGGTATGAGCACGTTTGCTTGTTTTTGTTTTTATTTTCATTTATCATTACAAGGTCATTTGCTTTCGAGCACATCTATTTTCTGTGAAGTACCAAAAGTGGATCTTTCTCACCATGGACATATAATTTTCTATGTTATGTAATGTCTGAATATGCGTGTACTACAGTAGATTTACTTTTAGTAGTAAGGGTACTACCCCTTTGTTGGGATCTTGATTCTTGAAATGCTGGCAGCAGACCTTGTTAACAACTGAATGCAAGTAGCCTATACACCAAGGTATCACAATCTTTTCATTTTACCTGCTTGTGTTGTCCTTCCGGCTATTTTTCTGCTGTACATGATGATGTTAATGTTTGACATGTGGAAAGATTGTCTTAAAATACTTTATCATGCTATCAATTGCATTACTGATGATGAGACGCTGGAAGTCTCATCTTAATGTATTCAAACCTTGCAAATCATTCTTGGAATTTGGACAGTTAGATCAGATTTCTTTGCAAGTGGATGCATAAGGTAAGCCCTATTCACATGTTAGTGATTTATGAAATAGACGTTATTATCTTGATCCTTCAGGTTATCTGTTCAGCTCGTGAGTGTTCTCATGCCTATGGTGCCATCTCATAATGCTTGTAATGTTTGGTAATAACATTTGTTCAGCCTTACAGTTTTCTTTTGTGAATGAGACGTAGGTGTTGAGTGGTAGACTTGTCTCTGCTTTGTAAGCTTGGCCTAATAAATATTCCTAGACTCCTTTGTCCATTTATGCAGGAATTCCGCGTTATGCATCACCGTACACACAGATGGCTCGACCAGTTTTTCCTCCACGCCCACTTGGTGCAGTTGGCATTATTCCTCCCTTGATGCGCCCTCCAATCCCTATGATGCGTCCTCCAATCATTCCTCCTGTTGCCAGGCCAGCTGCCATCCCAAGCATTACTCAAACAGAGAAACCACAAACAACAGTTTATGTTGGCAAGATATCGTCCACTGCAGAAAATGATTTTATGCTTTCTCTTTTGCAGGTGAGTGAATCTAACATTTCAGCAATTTCTCCAATTACTTTTTGAAGGGTGGAACTTAATTCTTTGTGTTGCTCACTTGTTTGTGCTCCAAAGCTCTAAATTTAACTGACCTTTCTGCTGTAATGTTTGCAAAGCTCTGCGGGCCTGTTAGGAGTTGGAAGCGTGCTCAAGATCCGACTAATGGATCACTTAAAGGTTTTGGGTTTTGTGAGTTTGAGTCTGCTGAGGGGGTTCTCCGTGCATTAAGATTGCTCAACAAATTAAACATCGATGG</genome_strand>
        <mrna_strand>ATACGCTCCTATGCCTAATGGTTACCATGCTATGCCTCAACCTGCTCCACAGGGCGCCATGATTCATCCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCCGCGTTATGCATCACCGTACACACAGATGGCTCGACCAGTTTTTCCTCCACGCCCACTTGGTGCAATTGGCATTATTCCTCCCTTGATGCGCCCTCCAATCCCTATGATGCGTCCTCCAATCATTCCTCCTGTTGCCAGGCCAGCTGCCATCCCAAGCATTACTCAAACAGAGAAACCACAAACAACAGTTTATGTTGGCAAGATATCGTCCACTGCAGAAAATGAGTTTATGCTTTCTCTTTTGCAG......................................................................................................................................CTCTGCGGGCCTGTTAGGAGTTGGAAGCGTGCTCAAGATCCGACTAATGGATCACTGAAAGGTTTTGGGTTTTGTGAGTTTGAGTCTGCTGAGGGGGTTCTCCGTGCATTAAGATTGCTCAACAAATTAAACATCGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326136" ref_strand="+" ref_description="SGN-E326136 [cTOC-16-L18]">
      <seq>gaattccgcgttatgcatcaccgtacacacagatggctcgaccagtttttcctccacgcccacttggtgcagttggcattattcctcccttgatgcgccctccaatccctatgatgcgtcctccaatcattcctcctgttgccaggccagctgccatcccaagcattactcaaacagagaaaccacaaacaacagtttatgttggcaagatatcgtccactgcagaaaatgattttatgctttctcttttgcagctctgcgggcctgttaggagttggaagcgtgctcaagatccgactaatggatcacttaaaggttttgggttttgtgagtttgagtctgctgagggggttctccgtgcattaagattgctcaacaaattaaacatcgatgggcaggagctaatgttaaatgtcaatcaagcaactcgcgatttccttgaacggtatgttgaaaagaaagcagagaactcaaagaaacccaaagaatctgaaagtgaaggcactgagaaagaaggagaaagtgcattangtggggagacaaatgaaaatccaaagacgaccgctgaacctcctgagtctagtacagaagaatcaaagcaagatagtggtgataaagggaacaaagaaaatcttgatgctgctaactttggtctggtcactgacgaagatangcaagctgacaaagaggccttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="90613" stop="92450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90913" g_stop="91166" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91167" i_stop="91300" i_length="134">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91301" g_stop="91453" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="407" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91454" i_stop="91861" i_length="408">
            <donor d_prob="0.583" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91862" g_stop="92150" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="696" r_length="289" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E326136" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90913" e_stop="91166"/>
          <exon e_start="91301" e_stop="91453"/>
          <exon e_start="91862" e_stop="92150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCCGCGTTATGCATCACCGTACACACAGATGGCTCGACCAGTTTTTCCTCCACGCCCACTTGGTGCAGTTGGCATTATTCCTCCCTTGATGCGCCCTCCAATCCCTATGATGCGTCCTCCAATCATTCCTCCTGTTGCCAGGCCAGCTGCCATCCCAAGCATTACTCAAACAGAGAAACCACAAACAACAGTTTATGTTGGCAAGATATCGTCCACTGCAGAAAATGATTTTATGCTTTCTCTTTTGCAGGTGAGTGAATCTAACATTTCAGCAATTTCTCCAATTACTTTTTGAAGGGTGGAACTTAATTCTTTGTGTTGCTCACTTGTTTGTGCTCCAAAGCTCTAAATTTAACTGACCTTTCTGCTGTAATGTTTGCAAAGCTCTGCGGGCCTGTTAGGAGTTGGAAGCGTGCTCAAGATCCGACTAATGGATCACTTAAAGGTTTTGGGTTTTGTGAGTTTGAGTCTGCTGAGGGGGTTCTCCGTGCATTAAGATTGCTCAACAAATTAAACATCGATGGGCAGGAGCTAATGGTATGATCCTGTCTTTTCCTCCTTTCTCTCTCGATCCCCACCCACCCACTCAATTTTTTTTCTTATCTAGAAAATACACACGGCCAACTGTCCAAAATAAATAAATTTTGTTCTATGTCTGCATATTTTAGGACTATTATTGTGCAGCATGAAGATCTCAGTGACAAATTAATTATGATACCTTATTTTTCCATCTGATAATGTGTGACTGTGCAGCTCATCTGTCTACTAAATATTTACAGTATCTTCCCCCAGTGTTTTGAAATATGAACATTTTGTTTTGTCTGCATGCATATTTCGACCAAATCATGTTGTAGGTGCTCTCCTTCAAGTCATGTTACATCCCCAACTTACTAAAGGGTAGTGAATTTCAACTATTAAACTTAGTTAGACTTGGTATCATTGCAGTTAAATGTCAATCAAGCAACTCGCGATTTCCTTGAACGGTATGTTGAAAAGAAAGCAGAGAACTCAAAGAAACCCAAAGAATCTGAAAGTGAAGGCACTGAGAAAGAAGGAGAAAGTGCATTAGGTGGGGAGACAAATGAAAATCCAAAGACGACCGCTGAACCTCCTGAGTCTAGTACAGAAGAATCAAAGCAAGATAGTGGTGATAAAGGGAACAAAGAAAATCTTGATGCTGCTAACTTTGGTCTGGTCACTGACGAAGATAGGCAAGCTGACAAAGAGGCCTTGG</genome_strand>
        <mrna_strand>GAATTCCGCGTTATGCATCACCGTACACACAGATGGCTCGACCAGTTTTTCCTCCACGCCCACTTGGTGCAGTTGGCATTATTCCTCCCTTGATGCGCCCTCCAATCCCTATGATGCGTCCTCCAATCATTCCTCCTGTTGCCAGGCCAGCTGCCATCCCAAGCATTACTCAAACAGAGAAACCACAAACAACAGTTTATGTTGGCAAGATATCGTCCACTGCAGAAAATGATTTTATGCTTTCTCTTTTGCAG......................................................................................................................................CTCTGCGGGCCTGTTAGGAGTTGGAAGCGTGCTCAAGATCCGACTAATGGATCACTTAAAGGTTTTGGGTTTTGTGAGTTTGAGTCTGCTGAGGGGGTTCTCCGTGCATTAAGATTGCTCAACAAATTAAACATCGATGGGCAGGAGCTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATGTCAATCAAGCAACTCGCGATTTCCTTGAACGGTATGTTGAAAAGAAAGCAGAGAACTCAAAGAAACCCAAAGAATCTGAAAGTGAAGGCACTGAGAAAGAAGGAGAAAGTGCATTANGTGGGGAGACAAATGAAAATCCAAAGACGACCGCTGAACCTCCTGAGTCTAGTACAGAAGAATCAAAGCAAGATAGTGGTGATAAAGGGAACAAAGAAAATCTTGATGCTGCTAACTTTGGTCTGGTCACTGACGAAGATANGCAAGCTGACAAAGAGGCCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328619" ref_strand="+" ref_description="SGN-E328619 [cTOC-23-D18]">
      <seq>gaattccgcgttatgcatcaccgtacacacagatggctcgaccagtttttcctccacgcccacttggtgcagttggcattattcctcccttgatgcgccctccaatccctatgatgcgtcctccaatcattcctcctgttgccaggccagctgccatcccaagcattactcaaacagagaaaccacaaacaacagtttatgttggcaagatatcgtccactgcagaaaatgattttatgctttctcttttgcagctctgcgggcctgttaggagttggaagcgtgctcaagatccgactaatggatcacttaaaggttttgggttttgtgagtttgagtctgctgaggggagtctccgtgcattaagattgctcaacaaattaaacatcgatgggcaggagctaatgttaaatgtcaatcaagcaactcgcgatttccttgaacggtatgttgaaaagaaagcagagaactcaaagaaacccaaagaatctgaaagtgaaggcactgagaaagaaggagaaagtgcattangtggggagacaaatgaaaatccaaagacgaccgctgaacctcctgagtctagtacagaagaatcaaagcaagatagtggtgataaagggaacaaagaaaatcttgatgctgctaactttggtctggtcactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="90613" stop="92418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90913" g_stop="91166" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91167" i_stop="91300" i_length="134">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91301" g_stop="91453" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="407" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91454" i_stop="91861" i_length="408">
            <donor d_prob="0.583" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91862" g_stop="92118" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="664" r_length="257" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E328619" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90913" e_stop="91166"/>
          <exon e_start="91301" e_stop="91453"/>
          <exon e_start="91862" e_stop="92118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCCGCGTTATGCATCACCGTACACACAGATGGCTCGACCAGTTTTTCCTCCACGCCCACTTGGTGCAGTTGGCATTATTCCTCCCTTGATGCGCCCTCCAATCCCTATGATGCGTCCTCCAATCATTCCTCCTGTTGCCAGGCCAGCTGCCATCCCAAGCATTACTCAAACAGAGAAACCACAAACAACAGTTTATGTTGGCAAGATATCGTCCACTGCAGAAAATGATTTTATGCTTTCTCTTTTGCAGGTGAGTGAATCTAACATTTCAGCAATTTCTCCAATTACTTTTTGAAGGGTGGAACTTAATTCTTTGTGTTGCTCACTTGTTTGTGCTCCAAAGCTCTAAATTTAACTGACCTTTCTGCTGTAATGTTTGCAAAGCTCTGCGGGCCTGTTAGGAGTTGGAAGCGTGCTCAAGATCCGACTAATGGATCACTTAAAGGTTTTGGGTTTTGTGAGTTTGAGTCTGCTGAGGGGGTTCTCCGTGCATTAAGATTGCTCAACAAATTAAACATCGATGGGCAGGAGCTAATGGTATGATCCTGTCTTTTCCTCCTTTCTCTCTCGATCCCCACCCACCCACTCAATTTTTTTTCTTATCTAGAAAATACACACGGCCAACTGTCCAAAATAAATAAATTTTGTTCTATGTCTGCATATTTTAGGACTATTATTGTGCAGCATGAAGATCTCAGTGACAAATTAATTATGATACCTTATTTTTCCATCTGATAATGTGTGACTGTGCAGCTCATCTGTCTACTAAATATTTACAGTATCTTCCCCCAGTGTTTTGAAATATGAACATTTTGTTTTGTCTGCATGCATATTTCGACCAAATCATGTTGTAGGTGCTCTCCTTCAAGTCATGTTACATCCCCAACTTACTAAAGGGTAGTGAATTTCAACTATTAAACTTAGTTAGACTTGGTATCATTGCAGTTAAATGTCAATCAAGCAACTCGCGATTTCCTTGAACGGTATGTTGAAAAGAAAGCAGAGAACTCAAAGAAACCCAAAGAATCTGAAAGTGAAGGCACTGAGAAAGAAGGAGAAAGTGCATTAGGTGGGGAGACAAATGAAAATCCAAAGACGACCGCTGAACCTCCTGAGTCTAGTACAGAAGAATCAAAGCAAGATAGTGGTGATAAAGGGAACAAAGAAAATCTTGATGCTGCTAACTTTGGTCTGGTCACTGA</genome_strand>
        <mrna_strand>GAATTCCGCGTTATGCATCACCGTACACACAGATGGCTCGACCAGTTTTTCCTCCACGCCCACTTGGTGCAGTTGGCATTATTCCTCCCTTGATGCGCCCTCCAATCCCTATGATGCGTCCTCCAATCATTCCTCCTGTTGCCAGGCCAGCTGCCATCCCAAGCATTACTCAAACAGAGAAACCACAAACAACAGTTTATGTTGGCAAGATATCGTCCACTGCAGAAAATGATTTTATGCTTTCTCTTTTGCAG......................................................................................................................................CTCTGCGGGCCTGTTAGGAGTTGGAAGCGTGCTCAAGATCCGACTAATGGATCACTTAAAGGTTTTGGGTTTTGTGAGTTTGAGTCTGCTGAGGGGAGTCTCCGTGCATTAAGATTGCTCAACAAATTAAACATCGATGGGCAGGAGCTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATGTCAATCAAGCAACTCGCGATTTCCTTGAACGGTATGTTGAAAAGAAAGCAGAGAACTCAAAGAAACCCAAAGAATCTGAAAGTGAAGGCACTGAGAAAGAAGGAGAAAGTGCATTANGTGGGGAGACAAATGAAAATCCAAAGACGACCGCTGAACCTCCTGAGTCTAGTACAGAAGAATCAAAGCAAGATAGTGGTGATAAAGGGAACAAAGAAAATCTTGATGCTGCTAACTTTGGTCTGGTCACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701418" ref_strand="+" ref_description="SGN-E701418 [FA15DF09]">
      <seq>ctatgatgcgtcctccaatcattcctcctgttgccaggccagctgccatcccaagcattactcaaacagagaaaccacaaacaacagtttatgttggcaagatatcgtccactgcagaaaatgattttatgctttctcttttgcagctctgcgggcctgttaggagttggaagcgtgctcaagatccgactaatggatcacttaaaggttttgggttttgtgagtttgagtctgctgagggggttctccgtgcattaagattgctcaacaaattaaacatcgatgggcaggagctaatgttaaatgtcaatcaagcaactcgcgatttccttgaacggtatgttgaaaagaaagcagagaactcaaagaaacccaaagaatctgaaagtgaaggcactgagaaagaaggagaaagtgcattaggtggggagacaaatgaaaatccaaagacgaccgctgaacctcctgagtctagtacagaagaatcaaagcaagatagtggtgataaagggaacaaagaaaatcttgatgctgctaactttggtctggtcactgacgaagataggcaagctgacaaagaggccttggagaagctcaaggatatgatcgaggaaaggctgaagaataaaccattaccacctccacctccacctccacaagcacctaaagatggttctgataactcatatacggaagacctcaaagatggagaaccangtagagatacagcaaaaaatgaagaaaaaaatgatgatgtcaacgaaagtaaaacttcaagtgagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="90721" stop="92757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91021" g_stop="91166" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91167" i_stop="91300" i_length="134">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91301" g_stop="91453" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="299" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91454" i_stop="91861" i_length="408">
            <donor d_prob="0.583" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91862" g_stop="92300" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="738" r_length="439" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92301" i_stop="92410" i_length="110">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92411" g_stop="92457" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="785" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E701418" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91021" e_stop="91166"/>
          <exon e_start="91301" e_stop="91453"/>
          <exon e_start="91862" e_stop="92300"/>
          <exon e_start="92411" e_stop="92457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGATGCGTCCTCCAATCATTCCTCCTGTTGCCAGGCCAGCTGCCATCCCAAGCATTACTCAAACAGAGAAACCACAAACAACAGTTTATGTTGGCAAGATATCGTCCACTGCAGAAAATGATTTTATGCTTTCTCTTTTGCAGGTGAGTGAATCTAACATTTCAGCAATTTCTCCAATTACTTTTTGAAGGGTGGAACTTAATTCTTTGTGTTGCTCACTTGTTTGTGCTCCAAAGCTCTAAATTTAACTGACCTTTCTGCTGTAATGTTTGCAAAGCTCTGCGGGCCTGTTAGGAGTTGGAAGCGTGCTCAAGATCCGACTAATGGATCACTTAAAGGTTTTGGGTTTTGTGAGTTTGAGTCTGCTGAGGGGGTTCTCCGTGCATTAAGATTGCTCAACAAATTAAACATCGATGGGCAGGAGCTAATGGTATGATCCTGTCTTTTCCTCCTTTCTCTCTCGATCCCCACCCACCCACTCAATTTTTTTTCTTATCTAGAAAATACACACGGCCAACTGTCCAAAATAAATAAATTTTGTTCTATGTCTGCATATTTTAGGACTATTATTGTGCAGCATGAAGATCTCAGTGACAAATTAATTATGATACCTTATTTTTCCATCTGATAATGTGTGACTGTGCAGCTCATCTGTCTACTAAATATTTACAGTATCTTCCCCCAGTGTTTTGAAATATGAACATTTTGTTTTGTCTGCATGCATATTTCGACCAAATCATGTTGTAGGTGCTCTCCTTCAAGTCATGTTACATCCCCAACTTACTAAAGGGTAGTGAATTTCAACTATTAAACTTAGTTAGACTTGGTATCATTGCAGTTAAATGTCAATCAAGCAACTCGCGATTTCCTTGAACGGTATGTTGAAAAGAAAGCAGAGAACTCAAAGAAACCCAAAGAATCTGAAAGTGAAGGCACTGAGAAAGAAGGAGAAAGTGCATTAGGTGGGGAGACAAATGAAAATCCAAAGACGACCGCTGAACCTCCTGAGTCTAGTACAGAAGAATCAAAGCAAGATAGTGGTGATAAAGGGAACAAAGAAAATCTTGATGCTGCTAACTTTGGTCTGGTCACTGACGAAGATAGGCAAGCTGACAAAGAGGCCTTGGAGAAGCTCAAGGATATGATCGAGGAAAGGCTGAAGAATAAACCATTACCACCTCCACCTCCACCTCCACAAGCACCTAAAGATGGTTCTGATAACTCATATACGGAAGACCTCAAAGATGGAGAACCAGGTAGAGATACAGCAAAAAATGGTTAGTTTCTTGGACCAATAGGAAGCCTATCTTTCCTTTATTTGTTTCGGATATTTTTCTTTTGTTGATGCTTTACTGACAGTTTGATTATGATTTTGGAAACACTGCAGAAGAAAAAAATGATGATGTCAACGAAAGTAAAACTTCAAGTGAGCAT</genome_strand>
        <mrna_strand>CTATGATGCGTCCTCCAATCATTCCTCCTGTTGCCAGGCCAGCTGCCATCCCAAGCATTACTCAAACAGAGAAACCACAAACAACAGTTTATGTTGGCAAGATATCGTCCACTGCAGAAAATGATTTTATGCTTTCTCTTTTGCAG......................................................................................................................................CTCTGCGGGCCTGTTAGGAGTTGGAAGCGTGCTCAAGATCCGACTAATGGATCACTTAAAGGTTTTGGGTTTTGTGAGTTTGAGTCTGCTGAGGGGGTTCTCCGTGCATTAAGATTGCTCAACAAATTAAACATCGATGGGCAGGAGCTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATGTCAATCAAGCAACTCGCGATTTCCTTGAACGGTATGTTGAAAAGAAAGCAGAGAACTCAAAGAAACCCAAAGAATCTGAAAGTGAAGGCACTGAGAAAGAAGGAGAAAGTGCATTAGGTGGGGAGACAAATGAAAATCCAAAGACGACCGCTGAACCTCCTGAGTCTAGTACAGAAGAATCAAAGCAAGATAGTGGTGATAAAGGGAACAAAGAAAATCTTGATGCTGCTAACTTTGGTCTGGTCACTGACGAAGATAGGCAAGCTGACAAAGAGGCCTTGGAGAAGCTCAAGGATATGATCGAGGAAAGGCTGAAGAATAAACCATTACCACCTCCACCTCCACCTCCACAAGCACCTAAAGATGGTTCTGATAACTCATATACGGAAGACCTCAAAGATGGAGAACCANGTAGAGATACAGCAAAAAATG..............................................................................................................AAGAAAAAAATGATGATGTCAACGAAAGTAAAACTTCAAGTGAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247062" ref_strand="+" ref_description="SGN-E247062 [cLEF-41-J23]">
      <seq>tatgatgcgtcctccaatcattcctcctgttgccaggccagctgccatcccaagcattactcaaacagagaaaccacaaacaacagtttatgttggcaagatatcgtccactgcagaaaatgattttatgctttctcttttgcagctctgcgggcctgttaggagttggaagcgtgctcaagatccgactaatggatcacttaaaggttttgggttttgtgagtttgagtctgctgagggggttctccgtgcattaagattgctcaacaaattaaacatcgatgggcaggagctaatgttaaatgtcaatcaagcaactcgcgatttccttgaacggtatgttgaaaagaaagcagagaactcaaagaaacccaaagaatctgaaagtgaaggcactgagaaagaaggagaaagtgcattaggtggggagacaaatgaaaatccaaagacgaccgctgaacctcctgagtctagtacagaagaatcaaagcaagatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="90722" stop="92362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91022" g_stop="91166" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91167" i_stop="91300" i_length="134">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91301" g_stop="91453" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="298" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91454" i_stop="91861" i_length="408">
            <donor d_prob="0.583" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91862" g_stop="92062" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="499" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E247062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91022" e_stop="91166"/>
          <exon e_start="91301" e_stop="91453"/>
          <exon e_start="91862" e_stop="92062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGATGCGTCCTCCAATCATTCCTCCTGTTGCCAGGCCAGCTGCCATCCCAAGCATTACTCAAACAGAGAAACCACAAACAACAGTTTATGTTGGCAAGATATCGTCCACTGCAGAAAATGATTTTATGCTTTCTCTTTTGCAGGTGAGTGAATCTAACATTTCAGCAATTTCTCCAATTACTTTTTGAAGGGTGGAACTTAATTCTTTGTGTTGCTCACTTGTTTGTGCTCCAAAGCTCTAAATTTAACTGACCTTTCTGCTGTAATGTTTGCAAAGCTCTGCGGGCCTGTTAGGAGTTGGAAGCGTGCTCAAGATCCGACTAATGGATCACTTAAAGGTTTTGGGTTTTGTGAGTTTGAGTCTGCTGAGGGGGTTCTCCGTGCATTAAGATTGCTCAACAAATTAAACATCGATGGGCAGGAGCTAATGGTATGATCCTGTCTTTTCCTCCTTTCTCTCTCGATCCCCACCCACCCACTCAATTTTTTTTCTTATCTAGAAAATACACACGGCCAACTGTCCAAAATAAATAAATTTTGTTCTATGTCTGCATATTTTAGGACTATTATTGTGCAGCATGAAGATCTCAGTGACAAATTAATTATGATACCTTATTTTTCCATCTGATAATGTGTGACTGTGCAGCTCATCTGTCTACTAAATATTTACAGTATCTTCCCCCAGTGTTTTGAAATATGAACATTTTGTTTTGTCTGCATGCATATTTCGACCAAATCATGTTGTAGGTGCTCTCCTTCAAGTCATGTTACATCCCCAACTTACTAAAGGGTAGTGAATTTCAACTATTAAACTTAGTTAGACTTGGTATCATTGCAGTTAAATGTCAATCAAGCAACTCGCGATTTCCTTGAACGGTATGTTGAAAAGAAAGCAGAGAACTCAAAGAAACCCAAAGAATCTGAAAGTGAAGGCACTGAGAAAGAAGGAGAAAGTGCATTAGGTGGGGAGACAAATGAAAATCCAAAGACGACCGCTGAACCTCCTGAGTCTAGTACAGAAGAATCAAAGCAAGATAGT</genome_strand>
        <mrna_strand>TATGATGCGTCCTCCAATCATTCCTCCTGTTGCCAGGCCAGCTGCCATCCCAAGCATTACTCAAACAGAGAAACCACAAACAACAGTTTATGTTGGCAAGATATCGTCCACTGCAGAAAATGATTTTATGCTTTCTCTTTTGCAG......................................................................................................................................CTCTGCGGGCCTGTTAGGAGTTGGAAGCGTGCTCAAGATCCGACTAATGGATCACTTAAAGGTTTTGGGTTTTGTGAGTTTGAGTCTGCTGAGGGGGTTCTCCGTGCATTAAGATTGCTCAACAAATTAAACATCGATGGGCAGGAGCTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATGTCAATCAAGCAACTCGCGATTTCCTTGAACGGTATGTTGAAAAGAAAGCAGAGAACTCAAAGAAACCCAAAGAATCTGAAAGTGAAGGCACTGAGAAAGAAGGAGAAAGTGCATTAGGTGGGGAGACAAATGAAAATCCAAAGACGACCGCTGAACCTCCTGAGTCTAGTACAGAAGAATCAAAGCAAGATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248223" ref_strand="+" ref_description="SGN-E248223 [cLEF-55-E1]">
      <seq>tatgatgcgtcctccaatcattcctcctgttgccaggccagctgccatcccaagcattactcaaacagagaaaccacaaacaacagtttatgttggcaagatatcgtccactgcagaaaatgattttatgctttctcttttgcagctctgcgggcctgttaggagttggaagcgtgctcaagatccgactaatggatcacttaaaggttttgggttttgtgagtttgagtctgctgagggggttctccgtgcattaagattgctcaacaaattaaacatcgatgggcaggagctaatgttaaatgtcaatcaagcaactcgcgatttccttgaacggtatgttgaaaagaaagcagagaactcaaagaaacccaaagaatctgaaagtgaaggcactgagaaagaaggagaaagtgcattaggtggggagacaaatgaaaatccaaagacgaccgctgaacctcctgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="90722" stop="92333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91022" g_stop="91166" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91167" i_stop="91300" i_length="134">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91301" g_stop="91453" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="298" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91454" i_stop="91861" i_length="408">
            <donor d_prob="0.583" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91862" g_stop="92033" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="470" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E248223" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91022" e_stop="91166"/>
          <exon e_start="91301" e_stop="91453"/>
          <exon e_start="91862" e_stop="92033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGATGCGTCCTCCAATCATTCCTCCTGTTGCCAGGCCAGCTGCCATCCCAAGCATTACTCAAACAGAGAAACCACAAACAACAGTTTATGTTGGCAAGATATCGTCCACTGCAGAAAATGATTTTATGCTTTCTCTTTTGCAGGTGAGTGAATCTAACATTTCAGCAATTTCTCCAATTACTTTTTGAAGGGTGGAACTTAATTCTTTGTGTTGCTCACTTGTTTGTGCTCCAAAGCTCTAAATTTAACTGACCTTTCTGCTGTAATGTTTGCAAAGCTCTGCGGGCCTGTTAGGAGTTGGAAGCGTGCTCAAGATCCGACTAATGGATCACTTAAAGGTTTTGGGTTTTGTGAGTTTGAGTCTGCTGAGGGGGTTCTCCGTGCATTAAGATTGCTCAACAAATTAAACATCGATGGGCAGGAGCTAATGGTATGATCCTGTCTTTTCCTCCTTTCTCTCTCGATCCCCACCCACCCACTCAATTTTTTTTCTTATCTAGAAAATACACACGGCCAACTGTCCAAAATAAATAAATTTTGTTCTATGTCTGCATATTTTAGGACTATTATTGTGCAGCATGAAGATCTCAGTGACAAATTAATTATGATACCTTATTTTTCCATCTGATAATGTGTGACTGTGCAGCTCATCTGTCTACTAAATATTTACAGTATCTTCCCCCAGTGTTTTGAAATATGAACATTTTGTTTTGTCTGCATGCATATTTCGACCAAATCATGTTGTAGGTGCTCTCCTTCAAGTCATGTTACATCCCCAACTTACTAAAGGGTAGTGAATTTCAACTATTAAACTTAGTTAGACTTGGTATCATTGCAGTTAAATGTCAATCAAGCAACTCGCGATTTCCTTGAACGGTATGTTGAAAAGAAAGCAGAGAACTCAAAGAAACCCAAAGAATCTGAAAGTGAAGGCACTGAGAAAGAAGGAGAAAGTGCATTAGGTGGGGAGACAAATGAAAATCCAAAGACGACCGCTGAACCTCCTGAGT</genome_strand>
        <mrna_strand>TATGATGCGTCCTCCAATCATTCCTCCTGTTGCCAGGCCAGCTGCCATCCCAAGCATTACTCAAACAGAGAAACCACAAACAACAGTTTATGTTGGCAAGATATCGTCCACTGCAGAAAATGATTTTATGCTTTCTCTTTTGCAG......................................................................................................................................CTCTGCGGGCCTGTTAGGAGTTGGAAGCGTGCTCAAGATCCGACTAATGGATCACTTAAAGGTTTTGGGTTTTGTGAGTTTGAGTCTGCTGAGGGGGTTCTCCGTGCATTAAGATTGCTCAACAAATTAAACATCGATGGGCAGGAGCTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATGTCAATCAAGCAACTCGCGATTTCCTTGAACGGTATGTTGAAAAGAAAGCAGAGAACTCAAAGAAACCCAAAGAATCTGAAAGTGAAGGCACTGAGAAAGAAGGAGAAAGTGCATTAGGTGGGGAGACAAATGAAAATCCAAAGACGACCGCTGAACCTCCTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304966" ref_strand="+" ref_description="SGN-E304966 [cLEX-10-D12]">
      <seq>tcaaacagagaaaccacaaacaacagtttatgttggcaagatatcgtccactgcagaaaatgattttatgctttctcttttgcagctctgcgggcctgttaggagttggaagcgtgctcaagatccgactaatggatcacttaaaggttttgggttttgtgagtttgagtctgctgagggggttctccgtgcattaagattgctcaacaaattaaacatcgatgggcaggagctaatgttaaatgtcaatcaagcaactcgcgatttccttgaacggtatgttgaaaagaaagcagagaactcaaagaaacccaaagaatctgaaagtgaaggcactgagaaagaaggagaaagtgcattaggtggggagacaaatgaaaatccaaagacgaccgctgaacctcctgagtctagtacagaagaatcaaagcaagatagtggtgataaagggaacaaagaaaatcttgatgctgctaactttggtctggtcactgacgaagataggcaagctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="90782" stop="92437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91082" g_stop="91166" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91167" i_stop="91300" i_length="134">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91301" g_stop="91453" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="238" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91454" i_stop="91861" i_length="408">
            <donor d_prob="0.583" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91862" g_stop="92137" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="514" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E304966" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91082" e_stop="91166"/>
          <exon e_start="91301" e_stop="91453"/>
          <exon e_start="91862" e_stop="92137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACAGAGAAACCACAAACAACAGTTTATGTTGGCAAGATATCGTCCACTGCAGAAAATGATTTTATGCTTTCTCTTTTGCAGGTGAGTGAATCTAACATTTCAGCAATTTCTCCAATTACTTTTTGAAGGGTGGAACTTAATTCTTTGTGTTGCTCACTTGTTTGTGCTCCAAAGCTCTAAATTTAACTGACCTTTCTGCTGTAATGTTTGCAAAGCTCTGCGGGCCTGTTAGGAGTTGGAAGCGTGCTCAAGATCCGACTAATGGATCACTTAAAGGTTTTGGGTTTTGTGAGTTTGAGTCTGCTGAGGGGGTTCTCCGTGCATTAAGATTGCTCAACAAATTAAACATCGATGGGCAGGAGCTAATGGTATGATCCTGTCTTTTCCTCCTTTCTCTCTCGATCCCCACCCACCCACTCAATTTTTTTTCTTATCTAGAAAATACACACGGCCAACTGTCCAAAATAAATAAATTTTGTTCTATGTCTGCATATTTTAGGACTATTATTGTGCAGCATGAAGATCTCAGTGACAAATTAATTATGATACCTTATTTTTCCATCTGATAATGTGTGACTGTGCAGCTCATCTGTCTACTAAATATTTACAGTATCTTCCCCCAGTGTTTTGAAATATGAACATTTTGTTTTGTCTGCATGCATATTTCGACCAAATCATGTTGTAGGTGCTCTCCTTCAAGTCATGTTACATCCCCAACTTACTAAAGGGTAGTGAATTTCAACTATTAAACTTAGTTAGACTTGGTATCATTGCAGTTAAATGTCAATCAAGCAACTCGCGATTTCCTTGAACGGTATGTTGAAAAGAAAGCAGAGAACTCAAAGAAACCCAAAGAATCTGAAAGTGAAGGCACTGAGAAAGAAGGAGAAAGTGCATTAGGTGGGGAGACAAATGAAAATCCAAAGACGACCGCTGAACCTCCTGAGTCTAGTACAGAAGAATCAAAGCAAGATAGTGGTGATAAAGGGAACAAAGAAAATCTTGATGCTGCTAACTTTGGTCTGGTCACTGACGAAGATAGGCAAGCTGAC</genome_strand>
        <mrna_strand>TCAAACAGAGAAACCACAAACAACAGTTTATGTTGGCAAGATATCGTCCACTGCAGAAAATGATTTTATGCTTTCTCTTTTGCAG......................................................................................................................................CTCTGCGGGCCTGTTAGGAGTTGGAAGCGTGCTCAAGATCCGACTAATGGATCACTTAAAGGTTTTGGGTTTTGTGAGTTTGAGTCTGCTGAGGGGGTTCTCCGTGCATTAAGATTGCTCAACAAATTAAACATCGATGGGCAGGAGCTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATGTCAATCAAGCAACTCGCGATTTCCTTGAACGGTATGTTGAAAAGAAAGCAGAGAACTCAAAGAAACCCAAAGAATCTGAAAGTGAAGGCACTGAGAAAGAAGGAGAAAGTGCATTAGGTGGGGAGACAAATGAAAATCCAAAGACGACCGCTGAACCTCCTGAGTCTAGTACAGAAGAATCAAAGCAAGATAGTGGTGATAAAGGGAACAAAGAAAATCTTGATGCTGCTAACTTTGGTCTGGTCACTGACGAAGATAGGCAAGCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339231" ref_strand="-" ref_description="SGN-E339231 [cTOF-4-C8]">
      <seq>aatggatcacttaaaggttttgggttttgtgagtttgagtcagctgagggggttctccgtgcattaagattgctcaaccaattaaacatggatgggcaggagttaatgttaaatgtcaatcaagcaactcgcgatttccttgaacggtatgtgtgaaaagaaagcagagagctcaaagaaacccaaagaatctgaaagtgaaggcgttgagaaagaaggagaaagtgcattaggtggggagaccaatgaaaatccaaagacggccgctgaccctcctgagtttagtacagaagaatccaagcaagatagtggtgataaaggggtcaaaaaaaatcttgatggtgctaactttggtctggtcactgaggaagataggcaaggtgtcaaagaggccttggagaagctcaaggatatgattgaggaaaggctgaagaataaaccattaccacctccacctccacctccacaagcacctaaagatggttttgataactcatatacggaagacctcaaagagtggagaaccaggtagagatccagcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcagactagtctctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="91046" stop="92598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91346" g_stop="91453" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91454" i_stop="91861" i_length="408">
            <donor d_prob="0.583" d_score="0.94"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91862" g_stop="92300" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="549" r_length="441" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="550" polyA_stop="581"/>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E339231" ref_strand="-">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339231" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91346" e_stop="91453"/>
          <exon e_start="91862" e_stop="92300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGATCACTTAAAGGTTTTGGGTTTTGTGAGTTTGAGTCTGCTGAGGGGGTTCTCCGTGCATTAAGATTGCTCAACAAATTAAACATCGATGGGCAGGAGCTAATGGTATGATCCTGTCTTTTCCTCCTTTCTCTCTCGATCCCCACCCACCCACTCAATTTTTTTTCTTATCTAGAAAATACACACGGCCAACTGTCCAAAATAAATAAATTTTGTTCTATGTCTGCATATTTTAGGACTATTATTGTGCAGCATGAAGATCTCAGTGACAAATTAATTATGATACCTTATTTTTCCATCTGATAATGTGTGACTGTGCAGCTCATCTGTCTACTAAATATTTACAGTATCTTCCCCCAGTGTTTTGAAATATGAACATTTTGTTTTGTCTGCATGCATATTTCGACCAAATCATGTTGTAGGTGCTCTCCTTCAAGTCATGTTACATCCCCAACTTACTAAAGGGTAGTGAATTTCAACTATTAAACTTAGTTAGACTTGGTATCATTGCAGTTAAATGTCAATCAAGCAACTCGCGATTTCCTTGAACGGTATGT-TGAAAAGAAAGCAGAGAACTCAAAGAAACCCAAAGAATCTGAAAGTGAAGGCACTGAGAAAGAAGGAGAAAGTGCATTAGGTGGGGAGACAAATGAAAATCCAAAGACGACCGCTGAACCTCCTGAGTCTAGTACAGAAGAATCAAAGCAAGATAGTGGTGATAAAGGGAACAAAGAAAATCTTGATGCTGCTAACTTTGGTCTGGTCACTGACGAAGATAGGCAAGCTGACAAAGAGGCCTTGGAGAAGCTCAAGGATATGATCGAGGAAAGGCTGAAGAATAAACCATTACCACCTCCACCTCCACCTCCACAAGCACCTAAAGATGGTTCTGATAACTCATATACGGAAGACCTCAAAGA-TGGAGAACCAGGTAGAGATACAGCAAAAAATG</genome_strand>
        <mrna_strand>AATGGATCACTTAAAGGTTTTGGGTTTTGTGAGTTTGAGTCAGCTGAGGGGGTTCTCCGTGCATTAAGATTGCTCAACCAATTAAACATGGATGGGCAGGAGTTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATGTCAATCAAGCAACTCGCGATTTCCTTGAACGGTATGTGTGAAAAGAAAGCAGAGAGCTCAAAGAAACCCAAAGAATCTGAAAGTGAAGGCGTTGAGAAAGAAGGAGAAAGTGCATTAGGTGGGGAGACCAATGAAAATCCAAAGACGGCCGCTGACCCTCCTGAGTTTAGTACAGAAGAATCCAAGCAAGATAGTGGTGATAAAGGGGTCAAAAAAAATCTTGATGGTGCTAACTTTGGTCTGGTCACTGAGGAAGATAGGCAAGGTGTCAAAGAGGCCTTGGAGAAGCTCAAGGATATGATTGAGGAAAGGCTGAAGAATAAACCATTACCACCTCCACCTCCACCTCCACAAGCACCTAAAGATGGTTTTGATAACTCATATACGGAAGACCTCAAAGAGTGGAGAACCAGGTAGAGATCCAGCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348469" ref_strand="+" ref_description="SGN-E348469 [cTOF-30-A16]">
      <seq>aagttatttcatatgaggaaaacaatcttgatagccaagataagaatatcgagacagctcattttaatttaagccagggtgaaggagttgcacaaaatgggactgatgaagaatccgtgcgtgcagttactgcaacatcagacatgaggcataatagcaatgcccctacaaaaaggttagaatttggcctctcagggtcaggaaaaagagctgctgtcccttctttcttcaatgcggatgaggatgaggatactcaaaaagaaaagaaaatgaggccattggttccaattgactactcagctgacgaacatatggtccaaccttccatctctgtagcatcgccgactatggctgcagaatttgcaaagcgaatttcaaatgtcaatgctaaagaagagaggcctgatatagagaaggagagacacagaagaactcatgacagatccagccagagggatcgggacaggcatgacgaggagactaaccgaaccagggatgacggtagaaaccttgatcatggcagagttcgggaaactagacctgataaggttaagacacctgataatcagaagcttttagatgcaaagcaattgattgacatgattccaaagacccaaagatgagttgttctcttatgagataaactgggctacttatgacaagaatgcattacatgaaaggatgagaaccgtggatcagtaaagaagatcactgatttncttggtgaggaggagccgacgctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="92678" stop="94586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92978" g_stop="93055" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93056" i_stop="93145" i_length="90">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93146" g_stop="93729" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="663" r_length="585" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93730" i_stop="94206" i_length="477">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94207" g_stop="94286" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="745" r_length="82" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E348469" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92978" e_stop="93055"/>
          <exon e_start="93146" e_stop="93729"/>
          <exon e_start="94207" e_stop="94286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTATTTCATATGAGGAAAACAATCTTGATAGCCAAGATAAGAATATCGAGACAGCTCATTTTAATTTAAGCCAGGGTAACTATTTTAGTTTATTCTTCTTAAGATTTATTATTATGGATTCTGCTCTTATCTTTTTATTTGACATTTGATGTTGAAAAATAACAGGTGAAGGAGTTGCACAAAATGGGACTGATGAAGAATCCGTGCGTGCAGTTACTGCAACATCAGACATGAGGCATAATAGCAATGCCCCTACAAAAAGGTTAGAATTTGGCCTCTCAGGGTCAGGAAAAAGAGCTGCTGTCCCTTCTTTCTTCAATGCGGATGAGGATGAGGATACTCAAAAAGAAAAGAAAATGAGGCCATTGGTTCCAATTGACTACTCAGCTGACGAACATATGGTCCAACCTTCCATCTCTGTAGCATCGCCGACTATGGCTGCAGAATTTGCAAAGCGAATTTCAAATGTCAATGCTAAAGAAGAGAGGCCTGATATAGAGAAGGAGAGACACAGAAGAACTCATGACAGATCCAGCCAGAGGGATCGGGACAGGCATGACGAGGAGACTAACCGAACCAGGGATGACGGTAGAAACCTTGATCATGGCAGAGTTCGGGAAACTAGACCTGATAAGGTTAAGACACCTGATAATCAGAAGCTTTTAGATGCAAAGCAATTGATTGACATGATTCCAAAGA-CCAAAGATGAGTTGTTCTCTTATGAGATAAACTGGGCTACTTATGACAAGGTGAGAAATGATCTGTCAGTTTCATTCTCTTGCTTTAGTACATGAGATGGTTTCATTAATTTATATGTTTTATTTTTAGAGTTATATGCTATCTGGTACTTGCAAATTCTAGCGAACACAGCTATGCATTTTCATATTGATGTGTTCCTGCAATTAACATAAAGCAGAGTGGGATGAGATGTGAGAGATAGCATACCCACTAAGTTTCTAGGATTTGGAGGGCTTTTATTACTATTGTGATTGATTTTTAGCCTAATGTCAGCCAAACATTTGATATTGGTTTTGGCCCCCGATATAGCCGGTCTTTCTTTCCAATCACACATTTCCTTTGAGCGCAGTAATAGTAAGAGCAACATGATGGTTCCTTTTAAATTGTTTTTACAAGAAACACAACTGATGAATGAGTTTCGGGTCTTCTATTGTTGGTTTATTGGAGCTGTGAATGTTTATAGTTTATATCTGCTTTGCTTTTCACAGAATGCATTACATGAAAGGATGAG-ACCGTGGATCAGT-AAGAAGATCACTGATTTCCTTGGTGAGGAGGAGCCGACGCTGGT</genome_strand>
        <mrna_strand>AAGTTATTTCATATGAGGAAAACAATCTTGATAGCCAAGATAAGAATATCGAGACAGCTCATTTTAATTTAAGCCAGG..........................................................................................GTGAAGGAGTTGCACAAAATGGGACTGATGAAGAATCCGTGCGTGCAGTTACTGCAACATCAGACATGAGGCATAATAGCAATGCCCCTACAAAAAGGTTAGAATTTGGCCTCTCAGGGTCAGGAAAAAGAGCTGCTGTCCCTTCTTTCTTCAATGCGGATGAGGATGAGGATACTCAAAAAGAAAAGAAAATGAGGCCATTGGTTCCAATTGACTACTCAGCTGACGAACATATGGTCCAACCTTCCATCTCTGTAGCATCGCCGACTATGGCTGCAGAATTTGCAAAGCGAATTTCAAATGTCAATGCTAAAGAAGAGAGGCCTGATATAGAGAAGGAGAGACACAGAAGAACTCATGACAGATCCAGCCAGAGGGATCGGGACAGGCATGACGAGGAGACTAACCGAACCAGGGATGACGGTAGAAACCTTGATCATGGCAGAGTTCGGGAAACTAGACCTGATAAGGTTAAGACACCTGATAATCAGAAGCTTTTAGATGCAAAGCAATTGATTGACATGATTCCAAAGACCCAAAGATGAGTTGTTCTCTTATGAGATAAACTGGGCTACTTATGACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCATTACATGAAAGGATGAGAACCGTGGATCAGTAAAGAAGATCACTGATTTNCTTGGTGAGGAGGAGCCGACGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339717" ref_strand="+" ref_description="SGN-E339717 [cTOE-16-I14]">
      <seq>agaaaatgaggccattggttccaattgactactcagctgacgaacatatggtccaaccttccatctctgtagcatcgccgactatggctgcagaatttgcaaagcgaatttcaaatgtccatgctaaagaagagaggcctgatatagagaaggagagacacagaagaactcatgacagatccagccagagggatcgggacaggcatgacaaggagactaaccgaaccagggatgacggcagaaaccttgatcatggcagagttcgggaaactagacctgataaggttaagacacctgataatcagaagctattagatgcaaagcaattgattgacatgattccaaagaccaaagatgagttgttctcttatgagataaactgggctacttatgacaagaatgcattacatgaaaggatgagaccgaggatcagtaagaagatcactgatttccttggtgaggaggagccgacgctggtagactacatcggctccagcactcaagaacatgtcaaggcaactgaaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="93032" stop="94637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93332" g_stop="93729" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93730" i_stop="94206" i_length="477">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94207" g_stop="94337" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="529" r_length="131" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E339717" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93332" e_stop="93729"/>
          <exon e_start="94207" e_stop="94337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGAGGCCATTGGTTCCAATTGACTACTCAGCTGACGAACATATGGTCCAACCTTCCATCTCTGTAGCATCGCCGACTATGGCTGCAGAATTTGCAAAGCGAATTTCAAATGTCAATGCTAAAGAAGAGAGGCCTGATATAGAGAAGGAGAGACACAGAAGAACTCATGACAGATCCAGCCAGAGGGATCGGGACAGGCATGACGAGGAGACTAACCGAACCAGGGATGACGGTAGAAACCTTGATCATGGCAGAGTTCGGGAAACTAGACCTGATAAGGTTAAGACACCTGATAATCAGAAGCTTTTAGATGCAAAGCAATTGATTGACATGATTCCAAAGACCAAAGATGAGTTGTTCTCTTATGAGATAAACTGGGCTACTTATGACAAGGTGAGAAATGATCTGTCAGTTTCATTCTCTTGCTTTAGTACATGAGATGGTTTCATTAATTTATATGTTTTATTTTTAGAGTTATATGCTATCTGGTACTTGCAAATTCTAGCGAACACAGCTATGCATTTTCATATTGATGTGTTCCTGCAATTAACATAAAGCAGAGTGGGATGAGATGTGAGAGATAGCATACCCACTAAGTTTCTAGGATTTGGAGGGCTTTTATTACTATTGTGATTGATTTTTAGCCTAATGTCAGCCAAACATTTGATATTGGTTTTGGCCCCCGATATAGCCGGTCTTTCTTTCCAATCACACATTTCCTTTGAGCGCAGTAATAGTAAGAGCAACATGATGGTTCCTTTTAAATTGTTTTTACAAGAAACACAACTGATGAATGAGTTTCGGGTCTTCTATTGTTGGTTTATTGGAGCTGTGAATGTTTATAGTTTATATCTGCTTTGCTTTTCACAGAATGCATTACATGAAAGGATGAGACCGTGGATCAGTAAGAAGATCACTGATTTCCTTGGTGAGGAGGAGCCGACGCTGGTAGACTACATCGTCTCCAGCACTCAAGAACATGTCAAGGCAACTGAGATGCT</genome_strand>
        <mrna_strand>AGAAAATGAGGCCATTGGTTCCAATTGACTACTCAGCTGACGAACATATGGTCCAACCTTCCATCTCTGTAGCATCGCCGACTATGGCTGCAGAATTTGCAAAGCGAATTTCAAATGTCCATGCTAAAGAAGAGAGGCCTGATATAGAGAAGGAGAGACACAGAAGAACTCATGACAGATCCAGCCAGAGGGATCGGGACAGGCATGACAAGGAGACTAACCGAACCAGGGATGACGGCAGAAACCTTGATCATGGCAGAGTTCGGGAAACTAGACCTGATAAGGTTAAGACACCTGATAATCAGAAGCTATTAGATGCAAAGCAATTGATTGACATGATTCCAAAGACCAAAGATGAGTTGTTCTCTTATGAGATAAACTGGGCTACTTATGACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCATTACATGAAAGGATGAGACCGAGGATCAGTAAGAAGATCACTGATTTCCTTGGTGAGGAGGAGCCGACGCTGGTAGACTACATCGGCTCCAGCACTCAAGAACATGTCAAGGCAACTGAAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308870" ref_strand="+" ref_description="SGN-E308870 [cLEY-23-G24]">
      <seq>ccgactatggctgcagaatttgcaaagcgaatttcaaatgtcaatgctaaagaagagaggcctgatatagagaaggagagacacagaagaactcatgacagatccagccagagggatcgggacaggcatgacgaggagactaaccgaaccagggatgacggtagaaaccttgatcatggcagagttcgggaaactagacctgataaggttaagacacctgataatcagaagcttttagatgcaaagcaattgattgacatgattccaaagaccaaagatgagttgttctcttatgagataaactgggctacttatgacaagaatgcattacatgaaaggatgagaccgtggatcagtaagaagatcactgatttccttggtgaggaggagccgacgctggtagactacatcgtctccagcactcaagaacatgtcaaggcaactgagatgctggagaggctccaaagtatattagatgaagaagctgaaatgtttgttctgaagatgtggaggatgcttatatttgaaatcaagaaagttgagacaggtctggctttaaggcccaaatcctaatttcagttgtgttctcacctgtaacttgaaagcatattcattaactcttgctactctatcaaatcattgtagaattgttttctttcaagcttaaaaatgacaaatagtttaggtcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="93109" stop="94877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93409" g_stop="93729" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93730" i_stop="94206" i_length="477">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94207" g_stop="94577" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="692" r_length="371" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E308870" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93409" e_stop="93729"/>
          <exon e_start="94207" e_stop="94577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGACTATGGCTGCAGAATTTGCAAAGCGAATTTCAAATGTCAATGCTAAAGAAGAGAGGCCTGATATAGAGAAGGAGAGACACAGAAGAACTCATGACAGATCCAGCCAGAGGGATCGGGACAGGCATGACGAGGAGACTAACCGAACCAGGGATGACGGTAGAAACCTTGATCATGGCAGAGTTCGGGAAACTAGACCTGATAAGGTTAAGACACCTGATAATCAGAAGCTTTTAGATGCAAAGCAATTGATTGACATGATTCCAAAGACCAAAGATGAGTTGTTCTCTTATGAGATAAACTGGGCTACTTATGACAAGGTGAGAAATGATCTGTCAGTTTCATTCTCTTGCTTTAGTACATGAGATGGTTTCATTAATTTATATGTTTTATTTTTAGAGTTATATGCTATCTGGTACTTGCAAATTCTAGCGAACACAGCTATGCATTTTCATATTGATGTGTTCCTGCAATTAACATAAAGCAGAGTGGGATGAGATGTGAGAGATAGCATACCCACTAAGTTTCTAGGATTTGGAGGGCTTTTATTACTATTGTGATTGATTTTTAGCCTAATGTCAGCCAAACATTTGATATTGGTTTTGGCCCCCGATATAGCCGGTCTTTCTTTCCAATCACACATTTCCTTTGAGCGCAGTAATAGTAAGAGCAACATGATGGTTCCTTTTAAATTGTTTTTACAAGAAACACAACTGATGAATGAGTTTCGGGTCTTCTATTGTTGGTTTATTGGAGCTGTGAATGTTTATAGTTTATATCTGCTTTGCTTTTCACAGAATGCATTACATGAAAGGATGAGACCGTGGATCAGTAAGAAGATCACTGATTTCCTTGGTGAGGAGGAGCCGACGCTGGTAGACTACATCGTCTCCAGCACTCAAGAACATGTCAAGGCAACTGAGATGCTGGAGAGGCTCCAAAGTATATTAGATGAAGAAGCTGAAATGTTTGTTCTGAAGATGTGGAGGATGCTTATATTTGAAATCAAGAAAGTTGAGACAGGTCTGGCTTTAAGGCCCAAATCCTAATTTCAGTTGTGTTCTCACCTGTAACTTGAAAGCATATTCATTAACTCTTGCTACTCTATCAAATCATTGTAGAATTGTTTTCTTTCAAGCTTAAAAATGACAAATAGTTTAGGTCAAAA</genome_strand>
        <mrna_strand>CCGACTATGGCTGCAGAATTTGCAAAGCGAATTTCAAATGTCAATGCTAAAGAAGAGAGGCCTGATATAGAGAAGGAGAGACACAGAAGAACTCATGACAGATCCAGCCAGAGGGATCGGGACAGGCATGACGAGGAGACTAACCGAACCAGGGATGACGGTAGAAACCTTGATCATGGCAGAGTTCGGGAAACTAGACCTGATAAGGTTAAGACACCTGATAATCAGAAGCTTTTAGATGCAAAGCAATTGATTGACATGATTCCAAAGACCAAAGATGAGTTGTTCTCTTATGAGATAAACTGGGCTACTTATGACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCATTACATGAAAGGATGAGACCGTGGATCAGTAAGAAGATCACTGATTTCCTTGGTGAGGAGGAGCCGACGCTGGTAGACTACATCGTCTCCAGCACTCAAGAACATGTCAAGGCAACTGAGATGCTGGAGAGGCTCCAAAGTATATTAGATGAAGAAGCTGAAATGTTTGTTCTGAAGATGTGGAGGATGCTTATATTTGAAATCAAGAAAGTTGAGACAGGTCTGGCTTTAAGGCCCAAATCCTAATTTCAGTTGTGTTCTCACCTGTAACTTGAAAGCATATTCATTAACTCTTGCTACTCTATCAAATCATTGTAGAATTGTTTTCTTTCAAGCTTAAAAATGACAAATAGTTTAGGTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314687" ref_strand="+" ref_description="SGN-E314687 [cTOA-20-P8]">
      <seq>gagattgtagcaacagcaaactcttaccaatgtgcgactccggcgaggctccgttcgacacacggcggtactataagcatattcatgataatgttcatggcaacatctatctcgataagcaagctctgaatttcatcgacactgaacagtttcagaggcttcgtgaattgaagcagctaggtcttggatacatggtttatcctggggctgtgcactctcggtttgagcattccctaggggtctattggctggccagtgacgctgtacatagacttaagacctatcaaggacaggagcttggtattgaatcttttgatgtacagaccgtgaaacttgctggattactacatgatgtgggtcatgggccattcagtcacttgtttgagcgtgaaattcttcctcgggttcgcagcggcattaaatggtcccatgaggatatgtctttgaagatgatagactacattgttgatgagaatagcattgatattgattctggcactttgaagaaagtaaaggaaatgatagttgcttctgaggcaggtaatcagtgagctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="102076" stop="97645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101776" g_stop="101658" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101657" i_stop="100318" i_length="1340">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100317" g_stop="100280" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="157" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100279" i_stop="100183" i_length="97">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100182" g_stop="100160" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="180" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100159" i_stop="99229" i_length="931">
            <donor d_prob="0.888" d_score="0.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99228" g_stop="99122" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="287" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99121" i_stop="99052" i_length="70">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99051" g_stop="99000" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="339" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98999" i_stop="98926" i_length="74">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.539" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98925" g_stop="98841" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="424" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98840" i_stop="98390" i_length="451">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98389" g_stop="98299" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="515" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98298" i_stop="97985" i_length="314">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97984" g_stop="97949" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="550" r_length="35" r_score="0.972"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="97948" i_stop="97844" i_length="105">
            <donor d_prob="0.760" d_score="0.00"/>
            <acceptor a_prob="0.928" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97843" g_stop="97837" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="557" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E314687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101776" e_stop="101658"/>
          <exon e_start="100317" e_stop="100280"/>
          <exon e_start="100182" e_stop="100160"/>
          <exon e_start="99228" e_stop="99122"/>
          <exon e_start="99051" e_stop="99000"/>
          <exon e_start="98925" e_stop="98841"/>
          <exon e_start="98389" e_stop="98299"/>
          <exon e_start="97984" e_stop="97949"/>
          <exon e_start="97843" e_stop="97837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTGTAGCAACAGCAAACTCTTACCAATGTGCGACTCCGGCGAGGCTCCGTTCGACACACGGCGGTACTATAAGCATATTCATGATAATGTTCATGGCAACATCTATCTCGATAAGGTACGGTTTCTTATTCGTTTTTTTTTGTTATGCTTTGCATGCTTTGATTCTTATCAAAATCGGAGTTCCTTTTTTTTGCTTTTGAGAAATTTTGAGTTTATTTCTACTGCTTTTGAATATGAAATGAAGAGATAAGTTCGGTGATTCGTATTTAGTTTTTCCAGTTTGAGTGTGAAATTTCTGATTCCCTTGTTCTGTTTTGCACGTTTTAATCGTTTAACTCAGTGTTCGTGTTTGCCTTTTTAGCATAATATTACTTTATTATTTGCATTTCTCTCTCGTGTCCGGTAGTGAGGTTTCGTAGCGTATACTTTATTATTTCGCGTGTCGCTGTTCTTATCAAAATCGGAGTACGTGTTTGTTTTTCAGCACAGTTACTCACTCACTCTTATTTCGGTTCTGCTTTTCGTTTGAATCGAAGAAGTTGATTTGATAACTTAAAATTATTTTTCCTTTTCGAGTGGTGAAATTCCACCACGTATGACTTGTACTCTGCTATAATGCTATACGTTATTTCTGAACTCGGCGTTCATCTTCGTCTTTTTCAAATTATGTCACGTTTTTTTTTGGCTTTTCTGGTGAAGTTCGATTGATAATTTGAAGTGCTTTTCTATTCCTGACCGGAAACCTCATATAAATACAGCATAAAAAATTTAAAAAAGAGATGCGACGTCATGCGGTATGAGAAAAAGGAAAAGTTCGGTGGCTTATACATGTTGGTTGTATGCTATGCGTGTACGCAAATATTTGTGTAGTGGGAATAGTGATGCACTTTCTCTCAATAGTTGCTAGTCAAGTCTATTTGGGCCTATAAAAGGTTTTGACTTCTTTCAAAACCTTGTGTGATTTGTTTACTCTTGTAATTTTGTTGATTCTCTTCTTTTAAAGTAGCATAGCACCTATTCATCTGTCTTGAGTTATTTAAGCGTAACACTCTTCGAATTTCGATAGTTTAATTTTTGAAATAAGATTATATATATGAAAATTATGTAAAAAGTATATTAAGTATTAATGATTGACGATTCAAAATACTTAAATGATATATGAAAAAATTATGATAAAAAATAAATTTGTTTAAATTTTGAAATCAAAGCATGTAAATTGGGACATATTACTTACTAAGTAGATAGGTAAATTTTCGTAGAGCAACAGATTTCCTTCACTAAATTCATCATTCATTGTTTAACGTTTGATTCTAGTGAAAAAGATTTTTTAAGTCAAAACAGAGTTTATATACGGCATGTACGATATATGTTTTCTATAATATCAGCACTTAGTGAAGATATCATATTTTCTATATTTATACTGTATTTAACAACAGTTCCTCCCTTCGATTGCAGCAAGCTCTGAATTTCATCGACACTGAACAGTTTCAGAGGCAAGCTTAATTTGTTTGTAAATTGTTTCTTTTCTGCTCCAGACATTTTTGATTGGCTGGAAATAATTCCAATTGTGTTTTCTTGTGTATGTTACAGGCTTCGTGAATTGAAGCAGCTAGGTACGCATATCCTTTATTTCTGATCAAGTTTCCCTTAATGATCAGGTGAATGTGTGTACATGTGAAGCTGTTGTTTAAACAAACTTTTTAATGTTTAGGATAAAGATTTTAGGGTTACTGGTGAAAATAAATATTCGAGGCTTTGCAAATGGATATATTTAAGGCTTGCAGGATAAATTTGGCTGTGTAATGGCACAAGCACATATTTAGTTTCAGCAGCTGTTGAACAAGTTGCAGGTGGATGTATCTGCTTTGATGTCCTTCCATATTAGAGAAGTCCAGTAATAGTTTTCTGAATAGCTGCACATAGTTCCATTTAACTTTACTCTCATGGCCATTTTATCGGCTTATGATGTGGCCATCTGGACTACTAGCTTGATCCCTGACTTTGTTATTTTATCGTCAACTTGCTCAAAGTTTCGCAACAACATATTCTTCAAAAAAAATAAAAAATTAAAGAGGATAAAACTAAAATGAGAAACAAGATTTCTACATATGGTGCAGGTGGTCATTTTCACTTTAAACTCCTTAGGCATCAACAACTAGACTTCATCATATCTTATCTCAATCATCTATATATGCACATTGATTAATGCTTAAAGCAATCAATTTTTTAGATCATAACTGCAAGTTGTCTTTTCCGTACTAATCTTCTTTTAGAAAAGGAGTACTGTGAGGTTCTTGTGTATCATCAATTAAAGTTATTGCTAGCAATTTGGTCCTGTAGCAGGAACAAATATACTTCTAATTGAACTGTATTAGAGCCAGTACACTTGTAAAGGCAGAAACTTTTCTGTTTCTTGGTGTTTCATGTCAGATACAAATAATCTGGATTAGAACTTTTTCAGAAAGTATATGCTCTTTTCCGGTGCTTTGCCAGCATTTGGGATTTAAACTTGTAATATTGACTCAAACTCAATTTCTGTCCTAGGTCTTGGATACATGGTTTATCCTGGGGCTGTGCACTCTCGGTTTGAGCATTCCCTAGGGGTCTATTGGCTGGCCAGTGACGCTGTACATAGACTTAAGACCTATCAAGTAGGAATATATCCTAATATCTTGGCCCTATATTTGATAAAATGTTTTGATGGATGTGCTGTGGTTGTAGGGACAGGAGCTTGGTATTGAATCTTTTGATGTACAGACCGTGAAACTTGCTGGTGAGTCAAACATACCAGCTAAGTTTCATTTTCTCAACAGTATCTGTCCATTGTTCTTACTTGAGTTCATCTAGGATTACTACATGATGTGGGTCATGGGCCATTCAGTCACTTGTTTGAGCGTGAAATTCTTCCTCGGGTTCGCAGCGGCATTAAATGGTAATTGTTAATAAAAACTCTTTCCTTTTCATCCATCAGAACTGGAGGATTGGATGCTTCCCTTATAGAGATATTTGGGCTGCTTGGCTCTATAAGTATATTCCTAAAATTCTTGTTCTTATTGGGCATCAATGCATGATTGTGTAGGCTTTTTTCTACCTATCTCTGCCGCTTTCGTCCATTTTAAGTGAAAGTACTCGTTTGTCCTCTTCATCCAAAATTAGTCCACCACTGAAAGAGTCTGTATGACATTACCATAACAATCACTATTCATGGGTTATATCCTTATTTCCCCAACAGAAATATTTGCAGTATTTGTGGCTTCAAAAGAATCCCATCACTAAAACAAAGCTATTTATGTACCTTTCCAAACATTGAGCAACATATTTTGTTTAAGAATTTCCTTATTTGAGTCTATTTTTCTAATACTTCCTGAATGGAAAAATTTCAGGTCCCATGAGGATATGTCTTTGAAGATGATAGACTACATTGTTGATGAGAATAGCATTGATATTGATTCTGGCACTTTGAAGAAAGTAAAGGTCGTATGAAAATAACTCATGTTATTTATGATGCCTTTTTGCATCCTTAAATCAAACATTCCCTCCCTCTAAAGATGCAATCTCAGCAGACTAGTATTAGTTGCCCTAAGTTTGTCTGTCTGCATAATTTAGTATGCATTTGGAATGTTATTTTCTTGAGCTGTACCTCATGCTTTCAGAATTATATAATGTAAGATTGAAAACCTTTCACGTTCATTATCATGAGCTTTATTTTCAGTTTGTTTTGGAGCTTTGTTTTAGATTCCTTTGGCTTTCCTCTGAGTGGTATTAAATCTCTCCTCTTTTCTACTCAGGAAATGATAGTTGCTTCTGAGGCAGGTAAATCAGTGGTAAGCATTTTTATGGGAGGATTTGAGTTGATGTGTTAAGATGTTAAAAAAGCTAAGATCTGACACATACTGAATTCTGTTGCTTCATTACTTGCTGTTATACAGAGCTCAA</genome_strand>
        <mrna_strand>GAGATTGTAGCAACAGCAAACTCTTACCAATGTGCGACTCCGGCGAGGCTCCGTTCGACACACGGCGGTACTATAAGCATATTCATGATAATGTTCATGGCAACATCTATCTCGATAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCTCTGAATTTCATCGACACTGAACAGTTTCAGAG.................................................................................................GCTTCGTGAATTGAAGCAGCTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGGATACATGGTTTATCCTGGGGCTGTGCACTCTCGGTTTGAGCATTCCCTAGGGGTCTATTGGCTGGCCAGTGACGCTGTACATAGACTTAAGACCTATCAA......................................................................GGACAGGAGCTTGGTATTGAATCTTTTGATGTACAGACCGTGAAACTTGCTG..........................................................................GATTACTACATGATGTGGGTCATGGGCCATTCAGTCACTTGTTTGAGCGTGAAATTCTTCCTCGGGTTCGCAGCGGCATTAAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCATGAGGATATGTCTTTGAAGATGATAGACTACATTGTTGATGAGAATAGCATTGATATTGATTCTGGCACTTTGAAGAAAGTAAAG..........................................................................................................................................................................................................................................................................................................................GAAATGATAGTTGCTTCTGAGGCAGGT-AATCAGTG.........................................................................................................AGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222724" ref_strand="+" ref_description="SGN-E222724 [cLEL-16-K13](-)">
      <seq>gtgtggtgctttttcgatggagtagaggagatgatcaaatggctgcctgtggtcagttaggtaaaccaggtgaaatccaagctcccgtgcttcgcgtgccttcccaatttcaagcagtactggaagctgccgcgtgatttcgtgtgctcttttttcaagcatgttcatcctggttttgtccaaaatgtctcacagtttcaaacttcaaagttgtatgctcatgaatcaatcactgatcttgttcaggttagatagtttatgcagtactttttaagatttctttcttcttcaactcagatcttcattaggcgtcctgagaatttggccatgtttcattatgaaattcggaaaaaaagtgaaaaattttcattgtcaatcgcctcctcaacacgtttgccaattcaccatattatcgttgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="103886" stop="102867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103586" g_stop="103170" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="439"/>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E222724" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103586" e_stop="103170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGGTGCTTTTTCGATGGAGTAGAGGAGATGATCAAATGGCTGCCTGTGGTCAGTTAGGTAAACCAGGTGAAATCCAAGCTCCCGTGCTTCGCGTGCCTTCCCAATTTCAAGCAGTACTGGAAGCTGCCGCGTGATTTCGTGTGCTCTTTTTTCAAGCATGTTCATCCTGGTTTTGTCCAAAATGTCTCACAGTTTCAAACTTCAAAGTTGTATGCTCATGAATCAATCACTGATCTTGTTCAGGTTAGATAGTTTATGCAGTACTTTTTAAGATTTCTTTCTTCTTCAACTCAGATCTTCATTAGGCGTCCTGAGAATTTGGCCATGTTTCATTATGAAATTCGGAAAAAAAGTGAAAAATTTTCATTGTCAATCGCCTCCTCAACACGTTTGTCAATTCACCATATTATCGTT</genome_strand>
        <mrna_strand>GTGTGGTGCTTTTTCGATGGAGTAGAGGAGATGATCAAATGGCTGCCTGTGGTCAGTTAGGTAAACCAGGTGAAATCCAAGCTCCCGTGCTTCGCGTGCCTTCCCAATTTCAAGCAGTACTGGAAGCTGCCGCGTGATTTCGTGTGCTCTTTTTTCAAGCATGTTCATCCTGGTTTTGTCCAAAATGTCTCACAGTTTCAAACTTCAAAGTTGTATGCTCATGAATCAATCACTGATCTTGTTCAGGTTAGATAGTTTATGCAGTACTTTTTAAGATTTCTTTCTTCTTCAACTCAGATCTTCATTAGGCGTCCTGAGAATTTGGCCATGTTTCATTATGAAATTCGGAAAAAAAGTGAAAAATTTTCATTGTCAATCGCCTCCTCAACACGTTTGCCAATTCACCATATTATCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222297" ref_strand="+" ref_description="SGN-E222297 [cLEL-16-K13](-)">
      <seq>tgtggtgctttttcgatggagtagaggagatgatcaaaatgctgcctgtggtcagttaggtaaaccaggtgaaatccaaagctnccgtgcttcgcgtgccttcccaatttcaagcagtactggaagctgccgcgtgatttcgtgtgctcttttttcaagcatgttcatcctggttttgtccaaaatagtctcacagtttcaaacttcaaagttgtatgctcatgaatcaatcactgatcttgttcaggttagatagtttatgcagtactttttaagatttctttcttcttcaactcagatcttcattaggcgtcctgagaatttggccatgtttcattatgaaattcggaaaaaaagtgaaaaattttcattgtcaatcgcctcctcaacacgtttgtcaattcaccatattatcgttgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="103885" stop="102867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103585" g_stop="103170" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="440"/>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E222297" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103585" e_stop="103170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGTGCTTTTTCGATGGAGTAGAGGAGATGATCAAATGGCTGCCTGTGGTCAGTTAGGTAAACCAGGTGAAATCCA-AGCTCCCGTGCTTCGCGTGCCTTCCCAATTTCAAGCAGTACTGGAAGCTGCCGCGTGATTTCGTGTGCTCTTTTTTCAAGCATGTTCATCCTGGTTTTGTCCAAAAT-GTCTCACAGTTTCAAACTTCAAAGTTGTATGCTCATGAATCAATCACTGATCTTGTTCAGGTTAGATAGTTTATGCAGTACTTTTTAAGATTTCTTTCTTCTTCAACTCAGATCTTCATTAGGCGTCCTGAGAATTTGGCCATGTTTCATTATGAAATTCGGAAAAAAAGTGAAAAATTTTCATTGTCAATCGCCTCCTCAACACGTTTGTCAATTCACCATATTATCGTT</genome_strand>
        <mrna_strand>TGTGGTGCTTTTTCGATGGAGTAGAGGAGATGATCAAAATGCTGCCTGTGGTCAGTTAGGTAAACCAGGTGAAATCCAAAGCTNCCGTGCTTCGCGTGCCTTCCCAATTTCAAGCAGTACTGGAAGCTGCCGCGTGATTTCGTGTGCTCTTTTTTCAAGCATGTTCATCCTGGTTTTGTCCAAAATAGTCTCACAGTTTCAAACTTCAAAGTTGTATGCTCATGAATCAATCACTGATCTTGTTCAGGTTAGATAGTTTATGCAGTACTTTTTAAGATTTCTTTCTTCTTCAACTCAGATCTTCATTAGGCGTCCTGAGAATTTGGCCATGTTTCATTATGAAATTCGGAAAAAAAGTGAAAAATTTTCATTGTCAATCGCCTCCTCAACACGTTTGTCAATTCACCATATTATCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372826" ref_strand="+" ref_description="SGN-E372826 [TUS-32-F20](-)">
      <seq>cgagtccaattgtgctttggcagtcagtttgaatgctacaactgatgaggtcagaagttggatcatgccaattaaccgcaaatttaacttgaacttgcttcttggaacactaagagaggagcttcaatcaaaacataaatacaaagttctgttcgagtatgtaatgcttgccggagttaatgatagtgttgaggatgcaaagagactaatcgatctagtccagggcattccatgcaagattaacctgatcacttttaaccctcattctggatccttcttcaaaccaactacaagagagaagataatcgagttcagagacattcttgctgaagcaggatgtgtggtgctttttcgatggagtagaggagatgatcaaatggctgcctgtggtcagttaggtaaaccaggtgaaatccaagctcccgtgcttcgcgtgccttcccaatttcaagcagtactggaagctgccgcgtgatttcgtgtgctcttttttcaagcatgttcatcctggttttgtccaaaatgtctcacagtttcaaacttcaaagttgtatgctcatgaatcaatcactgatcttgttcaggttagatagtttatgcagtactttttaagatttctttcttcttcaactcagatcttcattaggcgtcctgagaatttggccatgtttcattatgaaattcggaaaaaaagtgaaaaattttcattgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="106308" stop="102911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106008" g_stop="105960" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105959" i_stop="105872" i_length="88">
            <donor d_prob="0.428" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105871" g_stop="105735" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="186" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105734" i_stop="103739" i_length="1996">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103738" g_stop="103212" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="713" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E372826" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106008" e_stop="105960"/>
          <exon e_start="105871" e_stop="105735"/>
          <exon e_start="103738" e_stop="103212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTCCAATTGTGCTTTGGCAGTCAGTTTGAATGCTACAACTGATGAGGTATTTCCCTTGAGCAACTCAATTCTTGGGACGACAATGAAGAAACAAATAGCGTCATAATTTGATTCACACTTGTGAAATATTGCAGGTCAGAAGTTGGATCATGCCAATTAACCGCAAATTTAACTTGAACTTGCTTCTTGGAACACTAAGAGAGGAGCTTCAATCAAAACATAAATACAAAGTTCTGTTCGAGTATGTAATGCTTGCCGGAGTTAATGATAGGTATATACCTTGTTTTTTCTTCAATAGTATTTATTTTAGTCCCCAGTGTATTTCTTGAACACAAATAGTCCTTTATATTTGTAAAAAAGAGTGTCACCTATGGTCCCGTACTCCCATCAAACGGAACACACTTAAACTAACTGAAATATAAAAGAACTTAACAGATCCCAGGGGAACTAAACAAATAGACACAGACAAAAAGCCTATTCATCTTCAAGCTTTCTACTGAGACATGCTCTAGTTTCTGCTTTAGTTTGGTGTCCAAATACTCACCATTGTTGTTTCTTTGGTAACCAGTTTATCCATCAGGAGCCTCAAAATTCAAACTGAAAATCCATCTAAACCAAGGCTCCCAAATATATCCACATACCGAGAATTTGAATGCTTTTATATCCGATTTTGACTAAAGATAAGCTGTAGAAAGAAAATGCTTGTAGAATAATACGGGGAGATAGCTGTGAGTGGGTGGTTTCATACTAAATGATGCTTTCTTTCTTCTGCCTCTCTTTAATTTTTTGTTCTTTCATGATTATTTTTGGAATGAGTGTAAATATGTAGGAAAATGAATAAATGATGTTCTGATTTCAGAGATGGAAAAGAAAATTGTTTTTTTGCTGGAGTTCTCCGAGAATTTTACATATGAAAAGTGACTCAAAGAAATTAGAGAGATAGAGATTGGGTGGGGGTGGGGGAGCAGACAGGAGGCCTTTTGATTTTACCAAGTGTTTCTCATGTTTTCTTTCAAGTGGGAAAACCAGCAAGATGATTGATATCTTCATCGTTTTACTATTCAGCACCCTTCCATTAATATGATGAGTGTGCTGTTTGTTTGGATGTGTTCCGTTGGATGTGATAAAAAGTTACCCTCTTTTGCAAAGATAAAGGACTATTTGTCCATGGCTATATAAATAAGTATCAAAATACACCGACAGTCATACATAAGCACAATTGGGGCTTTTCTCATTTCTACAACTTTCCTTTTTTGTAAAGCTATGCCATTGTTATAAATTTATTCATACTGTTCAGTCTAACAAAATTCTATCCCTGGAGAGAGGAAGAGTAATGGCTTTGTGGTTGGTAGAGTTAATCGGTGCCATAGCAGTTAAGTTGTTCTATTTACCTTTTAAGTTGAAAGCAAAAACCAAAAGGTTGCATTTACTGCTCTACTCCTGCAAAATCTGGTCTATAGCGTTACTTCTAATCCTTTCAACTTTTCTACCATGTGTTGTACCAATGTGATTTTTGCAAGATAATGTCGTCATTTTTGTGCATGACAAGTATGTTCAGAAAGAGCATTACTCATGTGTTTCTAGACATCTAGAAATGAATTCTTGATGAAGCTAATAAGAGTAGAAACTAGATGATTATTTAGGAAAACATGGAAGAAACTTGAAATGTATATATAGAGGAAACTGTAAATATACTAAAAATAAATGCTGAGAAGGCCTTTTTTTAAGAAAAAGATAATGAAAAGCATGGGCTGACTTGCAGCATAATTGTACCAACTCTACCATAGTAACCCTACATTTTGCGATTCCATGGTGCATGTCTAATGTGCATGTCCAATCACACTAAACTTCCTCCGGCTTCTGGTTCCCCTCCATGATCCACTGGTTCAACCCATTGCACAGAACAAAAGAGCCGTGGTAACCCTTTCCCAACTTGCTTGGGATTTGTAGTGCAATTGTTGTTGTTTGTTGCAATTCCTCTATCACTTTGCACAGTCATGTATCTATTTGCCGTATACGCCAATGAATGCAGTTTCTTCACTGATTAACCCCTCCTTCCGGCTTCATGGAGAATGACTGTGATGATGTTTTACTCTGATGATTTTGGTGGATAGTTAATGTAGTTTTTTTATCTACTTGCATAGCCCTTGCTTTTCCCCTCTAGATATGAGTTTTACAGAATCAGTTGGCTTGCTCAATTAAGCAGAATATATATGTCTTTGTTTTCTATATCGTGTAAATTCTCATTGTTGAAATTTTATTTGCAGTGTTGAGGATGCAAAGAGACTAATCGATCTAGTCCAGGGCATTCCATGCAAGATTAACCTGATCACTTTTAACCCTCATTCTGGATCCTTCTTCAAACCAACTACAAGAGAGAAGATAATCGAGTTCAGAGACATTCTTGCTGAAGCAGGATGTGTGGTGCTTTTTCGATGGAGTAGAGGAGATGATCAAATGGCTGCCTGTGGTCAGTTAGGTAAACCAGGTGAAATCCAAGCTCCCGTGCTTCGCGTGCCTTCCCAATTTCAAGCAGTACTGGAAGCTGCCGCGTGATTTCGTGTGCTCTTTTTTCAAGCATGTTCATCCTGGTTTTGTCCAAAATGTCTCACAGTTTCAAACTTCAAAGTTGTATGCTCATGAATCAATCACTGATCTTGTTCAGGTTAGATAGTTTATGCAGTACTTTTTAAGATTTCTTTCTTCTTCAACTCAGATCTTCATTAGGCGTCCTGAGAATTTGGCCATGTTTCATTATGAAATTCGGAAAAAAAGTGAAAAATTTTCATTGTCA</genome_strand>
        <mrna_strand>CGAGTCCAATTGTGCTTTGGCAGTCAGTTTGAATGCTACAACTGATGAG........................................................................................GTCAGAAGTTGGATCATGCCAATTAACCGCAAATTTAACTTGAACTTGCTTCTTGGAACACTAAGAGAGGAGCTTCAATCAAAACATAAATACAAAGTTCTGTTCGAGTATGTAATGCTTGCCGGAGTTAATGATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGAGGATGCAAAGAGACTAATCGATCTAGTCCAGGGCATTCCATGCAAGATTAACCTGATCACTTTTAACCCTCATTCTGGATCCTTCTTCAAACCAACTACAAGAGAGAAGATAATCGAGTTCAGAGACATTCTTGCTGAAGCAGGATGTGTGGTGCTTTTTCGATGGAGTAGAGGAGATGATCAAATGGCTGCCTGTGGTCAGTTAGGTAAACCAGGTGAAATCCAAGCTCCCGTGCTTCGCGTGCCTTCCCAATTTCAAGCAGTACTGGAAGCTGCCGCGTGATTTCGTGTGCTCTTTTTTCAAGCATGTTCATCCTGGTTTTGTCCAAAATGTCTCACAGTTTCAAACTTCAAAGTTGTATGCTCATGAATCAATCACTGATCTTGTTCAGGTTAGATAGTTTATGCAGTACTTTTTAAGATTTCTTTCTTCTTCAACTCAGATCTTCATTAGGCGTCCTGAGAATTTGGCCATGTTTCATTATGAAATTCGGAAAAAAAGTGAAAAATTTTCATTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372827" ref_strand="+" ref_description="SGN-E372827 [TUS-32-F20]">
      <seq>aggcctgctcaggctctgatgttatggaaacgtctgtatggggataatatttgggctcaatgcagtgaggaattagaaggtttgaataaggatttcaggaaaatgttgggtgaacatgctgaatttaagacgttaaacttgaaagatattctgacagcgtctgatggaactaaaaagatgttattcaagttggaagatggtctggtaatagaaactgttctgataccttgtgagcggggcaggaacactgtctgtatatctagtcaagtaggttgtgccatgaattgccagttttgctataccggcagaatgggtctgaagagaaacttatccacttctgagatagttgagcaggctgttttagctcgacgcttgttatccagtgaagttggaccaattagcaacgttgtgtttatgggaatgggagaaccgcttcacaacattgagaatgtcttgaaagctgcagacatattggtagatgaacaagggcttcattttagtcctcgaaaggtcaccgtttctactagtgggcttgtgccccagcttaagcggtttcttcgcgagtccaattgtgctttggcagtcagtttgaatgctacaactgatgaggtcagaagttggatcatgccaattaaccgcaaatttaacttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="107679" stop="105528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107379" g_stop="107301" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107300" i_stop="107112" i_length="189">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107111" g_stop="107014" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="177" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107013" i_stop="106922" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106921" g_stop="106791" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="308" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106790" i_stop="106694" i_length="97">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106693" g_stop="106585" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="417" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106584" i_stop="106152" i_length="433">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106151" g_stop="105960" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="609" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105959" i_stop="105872" i_length="88">
            <donor d_prob="0.428" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105871" g_stop="105828" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="653" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E372827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107379" e_stop="107301"/>
          <exon e_start="107111" e_stop="107014"/>
          <exon e_start="106921" e_stop="106791"/>
          <exon e_start="106693" e_stop="106585"/>
          <exon e_start="106151" e_stop="105960"/>
          <exon e_start="105871" e_stop="105828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCTGCTCAGGCTCTGATGTTATGGAAACGTCTGTATGGGGATAATATTTGGGCTCAATGCAGTGAGGAATTAGAAGGTTTATTTTTTTTTTTTGCATACATATACTCTTGCTGTCAAAGTTTCTGTGTCGAAAGTGTTGATTGAGTTTATTGCTTATGGAAAGAGAAGGGTTCTGAATTTTTGTTTGGATCTTCCTTTATGTGCACTTTGTAATGTGATGGTAGTTACAGCTGATTGAATCATCAACGATACATTATCTTCCCAGGTTTGAATAAGGATTTCAGGAAAATGTTGGGTGAACATGCTGAATTTAAGACGTTAAACTTGAAAGATATTCTGACAGCGTCTGATGGAACTAAAAAGGTACATAGCTTGTGCAATATGTAGAATGTTGAGTGCCATCTGTTTTGTTTTTGATTCATCACTTAATAAATAGCACTCACAGGATCTTACAGATGTTATTCAAGTTGGAAGATGGTCTGGTAATAGAAACTGTTCTGATACCTTGTGAGCGGGGCAGGAACACTGTCTGTATATCTAGTCAAGTAGGTTGTGCCATGAATTGCCAGTTTTGCTATACCGGCAGGTAAAGCTCTAGCAGCCTTTTAACCTTTTGTTTATTTTTCCAATTTACAGTTCTTGAATTGGTTCCCTTTGTTTAAGTACATGAATCTACTATGCAGAATGGGTCTGAAGAGAAACTTATCCACTTCTGAGATAGTTGAGCAGGCTGTTTTAGCTCGACGCTTGTTATCCAGTGAAGTTGGACCAATTAGCAACGTTGTGTTTATGGTATGTGTATGCTTGAAGTGATTTCCTGAACTGAACATGTAATTTATTTTTGTGTATACATACAGTATTAACCAATAATTAACTTATGGTGTGGTGAATACCCTCGCTTGATGCAATGTGAGCAGCTTTGCTAATTTACCAAATCTAGCCCGCTTTGCTAGTATTGCTGAATTCTGTCTTCCTTGTGACCTTCTCCTAGGGCCATTATTCATGCTTCTCCCTGTTATTTAATCAGGCGTCATGGTTGACTGGAGTTGGTCTTTCTCTTCCACACTTAACAGCTATAATATTATGAAATCCTGTCTGAGACTTTGGCTCTATATTAATGAGGAATTAGAACAAAGACCCTTTGTCCCTTCTTCCTTATCTTTTTCTGTTATACTAAGCAATCAGTATTTGCTATTAGCAAATCTTGACAAATAACTCACTCCAGGGAATGGGAGAACCGCTTCACAACATTGAGAATGTCTTGAAAGCTGCAGACATATTGGTAGATGAACAAGGGCTTCATTTTAGTCCTCGAAAGGTCACCGTTTCTACTAGTGGGCTTGTGCCCCAGCTTAAGCGGTTTCTTCGCGAGTCCAATTGTGCTTTGGCAGTCAGTTTGAATGCTACAACTGATGAGGTATTTCCCTTGAGCAACTCAATTCTTGGGACGACAATGAAGAAACAAATAGCGTCATAATTTGATTCACACTTGTGAAATATTGCAGGTCAGAAGTTGGATCATGCCAATTAACCGCAAATTTAACTTGAA</genome_strand>
        <mrna_strand>AGGCCTGCTCAGGCTCTGATGTTATGGAAACGTCTGTATGGGGATAATATTTGGGCTCAATGCAGTGAGGAATTAGAAG.............................................................................................................................................................................................GTTTGAATAAGGATTTCAGGAAAATGTTGGGTGAACATGCTGAATTTAAGACGTTAAACTTGAAAGATATTCTGACAGCGTCTGATGGAACTAAAAAG............................................................................................ATGTTATTCAAGTTGGAAGATGGTCTGGTAATAGAAACTGTTCTGATACCTTGTGAGCGGGGCAGGAACACTGTCTGTATATCTAGTCAAGTAGGTTGTGCCATGAATTGCCAGTTTTGCTATACCGGCAG.................................................................................................AATGGGTCTGAAGAGAAACTTATCCACTTCTGAGATAGTTGAGCAGGCTGTTTTAGCTCGACGCTTGTTATCCAGTGAAGTTGGACCAATTAGCAACGTTGTGTTTATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGGGAGAACCGCTTCACAACATTGAGAATGTCTTGAAAGCTGCAGACATATTGGTAGATGAACAAGGGCTTCATTTTAGTCCTCGAAAGGTCACCGTTTCTACTAGTGGGCTTGTGCCCCAGCTTAAGCGGTTTCTTCGCGAGTCCAATTGTGCTTTGGCAGTCAGTTTGAATGCTACAACTGATGAG........................................................................................GTCAGAAGTTGGATCATGCCAATTAACCGCAAATTTAACTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727795" ref_strand="+" ref_description="SGN-E727795 [LA15DA09]">
      <seq>gaggggatgaggcgaattcgtttctccggcggcagcagcagcaactgtgctttgcttggaacaacttttcccttctcaaattacacaaattttccatttaaaaccaaatcttttctaaagctgcttccttcaagaacatctcttatcttcaccactcctcattatcgtttagttacagcagctcaacattcttctacacctcaaaccaacctttctgttgattctggaggtagtggccgaaatgggtatccattgaaggattcaaaagtggttttgaaagggatgagatatactgatcttgagaaatgggttcagtcatatggttataggcctgctcaggctctgatgttatggaaacgtctgtatggggataatatttgggctcaatgcagtttgaataaggatttcaggaaaatgttgggtgaacatgctgaatttaagacgttaaacttgaaagatattctgacagcgtctgatggaactaaaaagatgttattcaagttggaagatggtctggtaatagaaactgttctgataccttgtgagcggggcaggaacactgtctgtatatctagtcaagtaggttgtgccatgaattgccagttttgctataccggcagaatgggtctgaagagaaacttatccacttctgagatagttgagcaggctgttttagctcgacgcttgttatccagtgaagttggaccaattagcaacgttgtgtttatgggaatgggagaaccgcttcacaacattgagaatgtcttgaaagctgcagacatattggtagatgaacaagggcttcattttagtcctcgaaaggtcaccgtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="109127" stop="105747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108829" g_stop="108604" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108603" i_stop="108523" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108522" g_stop="108446" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="303" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108445" i_stop="107404" i_length="1042">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107403" g_stop="107316" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="391" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107315" i_stop="107112" i_length="204">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107111" g_stop="107014" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="489" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107013" i_stop="106922" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106921" g_stop="106791" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="620" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106790" i_stop="106694" i_length="97">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106693" g_stop="106585" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="729" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="106584" i_stop="106152" i_length="433">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="106151" g_stop="106047" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="834" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E727795" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108829" e_stop="108604"/>
          <exon e_start="108522" e_stop="108446"/>
          <exon e_start="107403" e_stop="107316"/>
          <exon e_start="107111" e_stop="107014"/>
          <exon e_start="106921" e_stop="106791"/>
          <exon e_start="106693" e_stop="106585"/>
          <exon e_start="106151" e_stop="106047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGATGAGGCGAATTCGTTTCTCCGGCGGCAGCAGCAGCAACTGTGCTTTGCTTGGAACAACTTTTCCCTTCTCAAATTACACAAATTTTCCATTTAAAACCAAATCTTTTCTAAAGCTGCTTCCTTCAAGAACATCTCTTATCTTCACCACTCCTCATTATCGTTTAGTTACAGCAGCTCAACATTCTTCTACACCTCAAACCAACCTTTCTGTTGATTCTGGTAAGTACCCTTTACTTTATCTGCTGAGAGGTTCTTCTCTCCTTTGTTCTTGATTCTGTTTTGTTTGGTTGTGTATGGTAGGAGGTAGTGGCCGAAATGGGTATCCATTGAAGGATTCAAAAGTGGTTTTGAAAGGGATGAGATATACTGATCTTGAGGTATGTGTATTTAAGTTGTTGGCTGTGTGTCTTAGTTAGATTAGTATCAAATTGAGTAAAGTTGAAATCTTGATGCTGATTTAAGGTTTAGTATTGTTTTTTTTGTGTTTTTGAGATTAAGCTCGTTCACTTGGTAACTGAATTTCGGCTGTTGTGCTGTATATTTTGGTTGATTGAGTTGATATTTGAGGAAAGATGCAATCTTGATAGTTAATTAGTGATTTAGTCTTGTTTTCTGGTTAAAGATTCAAACTTAGTTTGTGTTCTTGAGATTAAGGCTAATGATATGTTGTCGTGAGGTTTTGGTTAGCCCGACTACTATAGGATAGCTACTTTTAGCTTTTGTACGGTCCCTTCCGCTTTGGTATAGTTTTTGTTGTTAAATTTGACAAGATTCTAGGTGAATTAGAGTGAAGATTCAGAAAGTAGATGAATCCTTTATATATCTTTCTTTGTATGTTGATAGCTTCCAAAAGTCAAGAGGAAATTGAGAAGTTGAAGACTCAAGTAAGAAAGAAGTTTTGAGATGAATGTTTTGGGTGAGGTGAAAAAATTTCTTGGCATGGAGAGAAAAAGAGATAGACATTCAAAGAAACTCTTATTATCCCAGAAATAATACATACTTGAAGAGGGTACTAGCCTCAGCTAATCGGACATGAGCAAAAGTGTGTTTGATGGTATGCGAATTTGGGTTGTACCTGTTTTGTATTATTAACTTTGTTGAAATTTGAGGAAAGCTGCAATTTTGATAGGATTTAGTCCATGTTTGTTTTTCTTGCATAAAGGTTCAAAGTTGTTTCGGATTCATGTGATTAAGCTTTGTGCCATGGTATTCGTACTTAGATTGTTCCTTCCCTGTACTTTAAGTTAACCTTGTAGACTTTTAAGGAAAGTTCCAAGATTGAGAATGGTTTATCTTGTTCTTGGCTTAAACTATAATCTTGTATTGGAATTTGAGATCAATTTTGATATTTGTGTTTGATTTTAATGTTCAATGGCCTACCATAGTTACTAAAACTCGCTCTGCTTTCTTGTTTAACAGAAATGGGTTCAGTCATATGGTTATAGGCCTGCTCAGGCTCTGATGTTATGGAAACGTCTGTATGGGGATAATATTTGGGCTCAATGCAGTGAGGAATTAGAAGGTTTATTTTTTTTTTTTGCATACATATACTCTTGCTGTCAAAGTTTCTGTGTCGAAAGTGTTGATTGAGTTTATTGCTTATGGAAAGAGAAGGGTTCTGAATTTTTGTTTGGATCTTCCTTTATGTGCACTTTGTAATGTGATGGTAGTTACAGCTGATTGAATCATCAACGATACATTATCTTCCCAGGTTTGAATAAGGATTTCAGGAAAATGTTGGGTGAACATGCTGAATTTAAGACGTTAAACTTGAAAGATATTCTGACAGCGTCTGATGGAACTAAAAAGGTACATAGCTTGTGCAATATGTAGAATGTTGAGTGCCATCTGTTTTGTTTTTGATTCATCACTTAATAAATAGCACTCACAGGATCTTACAGATGTTATTCAAGTTGGAAGATGGTCTGGTAATAGAAACTGTTCTGATACCTTGTGAGCGGGGCAGGAACACTGTCTGTATATCTAGTCAAGTAGGTTGTGCCATGAATTGCCAGTTTTGCTATACCGGCAGGTAAAGCTCTAGCAGCCTTTTAACCTTTTGTTTATTTTTCCAATTTACAGTTCTTGAATTGGTTCCCTTTGTTTAAGTACATGAATCTACTATGCAGAATGGGTCTGAAGAGAAACTTATCCACTTCTGAGATAGTTGAGCAGGCTGTTTTAGCTCGACGCTTGTTATCCAGTGAAGTTGGACCAATTAGCAACGTTGTGTTTATGGTATGTGTATGCTTGAAGTGATTTCCTGAACTGAACATGTAATTTATTTTTGTGTATACATACAGTATTAACCAATAATTAACTTATGGTGTGGTGAATACCCTCGCTTGATGCAATGTGAGCAGCTTTGCTAATTTACCAAATCTAGCCCGCTTTGCTAGTATTGCTGAATTCTGTCTTCCTTGTGACCTTCTCCTAGGGCCATTATTCATGCTTCTCCCTGTTATTTAATCAGGCGTCATGGTTGACTGGAGTTGGTCTTTCTCTTCCACACTTAACAGCTATAATATTATGAAATCCTGTCTGAGACTTTGGCTCTATATTAATGAGGAATTAGAACAAAGACCCTTTGTCCCTTCTTCCTTATCTTTTTCTGTTATACTAAGCAATCAGTATTTGCTATTAGCAAATCTTGACAAATAACTCACTCCAGGGAATGGGAGAACCGCTTCACAACATTGAGAATGTCTTGAAAGCTGCAGACATATTGGTAGATGAACAAGGGCTTCATTTTAGTCCTCGAAAGGTCACCGTTTCT</genome_strand>
        <mrna_strand>GAGGGGATGAGGCGAATTCGTTTCTCCGGCGGCAGCAGCAGCAACTGTGCTTTGCTTGGAACAACTTTTCCCTTCTCAAATTACACAAATTTTCCATTTAAAACCAAATCTTTTCTAAAGCTGCTTCCTTCAAGAACATCTCTTATCTTCACCACTCCTCATTATCGTTTAGTTACAGCAGCTCAACATTCTTCTACACCTCAAACCAACCTTTCTGTTGATTCTG.................................................................................GAGGTAGTGGCCGAAATGGGTATCCATTGAAGGATTCAAAAGTGGTTTTGAAAGGGATGAGATATACTGATCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGGTTCAGTCATATGGTTATAGGCCTGCTCAGGCTCTGATGTTATGGAAACGTCTGTATGGGGATAATATTTGGGCTCAATGCA............................................................................................................................................................................................................GTTTGAATAAGGATTTCAGGAAAATGTTGGGTGAACATGCTGAATTTAAGACGTTAAACTTGAAAGATATTCTGACAGCGTCTGATGGAACTAAAAAG............................................................................................ATGTTATTCAAGTTGGAAGATGGTCTGGTAATAGAAACTGTTCTGATACCTTGTGAGCGGGGCAGGAACACTGTCTGTATATCTAGTCAAGTAGGTTGTGCCATGAATTGCCAGTTTTGCTATACCGGCAG.................................................................................................AATGGGTCTGAAGAGAAACTTATCCACTTCTGAGATAGTTGAGCAGGCTGTTTTAGCTCGACGCTTGTTATCCAGTGAAGTTGGACCAATTAGCAACGTTGTGTTTATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGGGAGAACCGCTTCACAACATTGAGAATGTCTTGAAAGCTGCAGACATATTGGTAGATGAACAAGGGCTTCATTTTAGTCCTCGAAAGGTCACCGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292764" ref_strand="+" ref_description="SGN-E292764 [cLET-11-H18]">
      <seq>aggcctgctcaggctctgatgttatggaaacgtctgtatggggataatatttgggctcaatgcagtgaggaattagaaggtttgaataaggatttcaggaaaatgttgggtgaacatgctgaatttaagacgttaaacttgaaagatattctgacagcgtctgatggaactaaaaagatgttattcaagttggaagatggtctggtaatagaaactgttctgataccttgtgagcggggcaggaacactgtctgtatatctagtcaagtaggttgtgccatgaattgccagttttgctataccggcagaatgggtctgaagagaaacttatccacttctgagatagttgagcaggctgttttagctcgacgcttgttatccagtgaagttggaccaattagcaacgttgtgtttatgggaatgggagaaccgcttcacaacattgagaatgtcttgaaagctgcagacatattggtagatgaacaagggcttcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="107679" stop="105771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107379" g_stop="107301" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107300" i_stop="107112" i_length="189">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107111" g_stop="107014" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="177" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107013" i_stop="106922" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106921" g_stop="106791" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="308" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106790" i_stop="106694" i_length="97">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106693" g_stop="106585" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="417" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106584" i_stop="106152" i_length="433">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106151" g_stop="106071" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="498" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E292764" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107379" e_stop="107301"/>
          <exon e_start="107111" e_stop="107014"/>
          <exon e_start="106921" e_stop="106791"/>
          <exon e_start="106693" e_stop="106585"/>
          <exon e_start="106151" e_stop="106071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCTGCTCAGGCTCTGATGTTATGGAAACGTCTGTATGGGGATAATATTTGGGCTCAATGCAGTGAGGAATTAGAAGGTTTATTTTTTTTTTTTGCATACATATACTCTTGCTGTCAAAGTTTCTGTGTCGAAAGTGTTGATTGAGTTTATTGCTTATGGAAAGAGAAGGGTTCTGAATTTTTGTTTGGATCTTCCTTTATGTGCACTTTGTAATGTGATGGTAGTTACAGCTGATTGAATCATCAACGATACATTATCTTCCCAGGTTTGAATAAGGATTTCAGGAAAATGTTGGGTGAACATGCTGAATTTAAGACGTTAAACTTGAAAGATATTCTGACAGCGTCTGATGGAACTAAAAAGGTACATAGCTTGTGCAATATGTAGAATGTTGAGTGCCATCTGTTTTGTTTTTGATTCATCACTTAATAAATAGCACTCACAGGATCTTACAGATGTTATTCAAGTTGGAAGATGGTCTGGTAATAGAAACTGTTCTGATACCTTGTGAGCGGGGCAGGAACACTGTCTGTATATCTAGTCAAGTAGGTTGTGCCATGAATTGCCAGTTTTGCTATACCGGCAGGTAAAGCTCTAGCAGCCTTTTAACCTTTTGTTTATTTTTCCAATTTACAGTTCTTGAATTGGTTCCCTTTGTTTAAGTACATGAATCTACTATGCAGAATGGGTCTGAAGAGAAACTTATCCACTTCTGAGATAGTTGAGCAGGCTGTTTTAGCTCGACGCTTGTTATCCAGTGAAGTTGGACCAATTAGCAACGTTGTGTTTATGGTATGTGTATGCTTGAAGTGATTTCCTGAACTGAACATGTAATTTATTTTTGTGTATACATACAGTATTAACCAATAATTAACTTATGGTGTGGTGAATACCCTCGCTTGATGCAATGTGAGCAGCTTTGCTAATTTACCAAATCTAGCCCGCTTTGCTAGTATTGCTGAATTCTGTCTTCCTTGTGACCTTCTCCTAGGGCCATTATTCATGCTTCTCCCTGTTATTTAATCAGGCGTCATGGTTGACTGGAGTTGGTCTTTCTCTTCCACACTTAACAGCTATAATATTATGAAATCCTGTCTGAGACTTTGGCTCTATATTAATGAGGAATTAGAACAAAGACCCTTTGTCCCTTCTTCCTTATCTTTTTCTGTTATACTAAGCAATCAGTATTTGCTATTAGCAAATCTTGACAAATAACTCACTCCAGGGAATGGGAGAACCGCTTCACAACATTGAGAATGTCTTGAAAGCTGCAGACATATTGGTAGATGAACAAGGGCTTCATTTT</genome_strand>
        <mrna_strand>AGGCCTGCTCAGGCTCTGATGTTATGGAAACGTCTGTATGGGGATAATATTTGGGCTCAATGCAGTGAGGAATTAGAAG.............................................................................................................................................................................................GTTTGAATAAGGATTTCAGGAAAATGTTGGGTGAACATGCTGAATTTAAGACGTTAAACTTGAAAGATATTCTGACAGCGTCTGATGGAACTAAAAAG............................................................................................ATGTTATTCAAGTTGGAAGATGGTCTGGTAATAGAAACTGTTCTGATACCTTGTGAGCGGGGCAGGAACACTGTCTGTATATCTAGTCAAGTAGGTTGTGCCATGAATTGCCAGTTTTGCTATACCGGCAG.................................................................................................AATGGGTCTGAAGAGAAACTTATCCACTTCTGAGATAGTTGAGCAGGCTGTTTTAGCTCGACGCTTGTTATCCAGTGAAGTTGGACCAATTAGCAACGTTGTGTTTATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGGGAGAACCGCTTCACAACATTGAGAATGTCTTGAAAGCTGCAGACATATTGGTAGATGAACAAGGGCTTCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731778" ref_strand="+" ref_description="SGN-E731778 [LA28AF09]">
      <seq>aagaccgtttggtgtgtgtttgaggatgaggcgaattcgtttctccggcggcagcagcagcaactgtgctttgcttggaacaacttttcccttctcaaattacacaaattttccatttaaaaccaaatcttttctaaagctgcttccttcaagaacatctcttatcttcaccactcctcattatcgtttagttacagcagctcaacattcttctacacctcaaaccaacctttctgttgattctggaggtagtggccgaaatgggtatccattgaaggattcaaaagtggttttgaaagggatgagatatactgatcttgagaaatgggttcagtcatatggttataggcctgctcaggctctgatgttatggaaacgtctgtatggggataatatttgggctcaatgcagtgaggaattagaaggtttgaataaggatttcaggaaaatgttgggtgaacatgctgaatttaagacgttaaacttgaaagatattctgacagcgtctgatggaactaaaaagatgttattcaagttggaagatggtctggtaatagaaactgttctgataccttgtgagcggggcaggaacactgtctgtatatctagtcaagtaggttgtgccatgaattgccagttttgctataccggcagaatgggtctgaagagaaacttatccacttctgagatagttgagcaggctgttttagctcgacgcttgttatccagtgaagttggaccaattagcaacgttgtgtttatgggaatgggagaaccgcttcacaacattgagaatgtctttgaagctgcagacatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="109148" stop="105797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108848" g_stop="108604" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108603" i_stop="108523" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108522" g_stop="108446" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="322" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108445" i_stop="107404" i_length="1042">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107403" g_stop="107301" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="425" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107300" i_stop="107112" i_length="189">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107111" g_stop="107014" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="523" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107013" i_stop="106922" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106921" g_stop="106791" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="654" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106790" i_stop="106694" i_length="97">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106693" g_stop="106585" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="763" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="106584" i_stop="106152" i_length="433">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="106151" g_stop="106097" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="818" r_length="55" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E731778" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108848" e_stop="108604"/>
          <exon e_start="108522" e_stop="108446"/>
          <exon e_start="107403" e_stop="107301"/>
          <exon e_start="107111" e_stop="107014"/>
          <exon e_start="106921" e_stop="106791"/>
          <exon e_start="106693" e_stop="106585"/>
          <exon e_start="106151" e_stop="106097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACCGTTTGGTGTGTGTTTGAGGATGAGGCGAATTCGTTTCTCCGGCGGCAGCAGCAGCAACTGTGCTTTGCTTGGAACAACTTTTCCCTTCTCAAATTACACAAATTTTCCATTTAAAACCAAATCTTTTCTAAAGCTGCTTCCTTCAAGAACATCTCTTATCTTCACCACTCCTCATTATCGTTTAGTTACAGCAGCTCAACATTCTTCTACACCTCAAACCAACCTTTCTGTTGATTCTGGTAAGTACCCTTTACTTTATCTGCTGAGAGGTTCTTCTCTCCTTTGTTCTTGATTCTGTTTTGTTTGGTTGTGTATGGTAGGAGGTAGTGGCCGAAATGGGTATCCATTGAAGGATTCAAAAGTGGTTTTGAAAGGGATGAGATATACTGATCTTGAGGTATGTGTATTTAAGTTGTTGGCTGTGTGTCTTAGTTAGATTAGTATCAAATTGAGTAAAGTTGAAATCTTGATGCTGATTTAAGGTTTAGTATTGTTTTTTTTGTGTTTTTGAGATTAAGCTCGTTCACTTGGTAACTGAATTTCGGCTGTTGTGCTGTATATTTTGGTTGATTGAGTTGATATTTGAGGAAAGATGCAATCTTGATAGTTAATTAGTGATTTAGTCTTGTTTTCTGGTTAAAGATTCAAACTTAGTTTGTGTTCTTGAGATTAAGGCTAATGATATGTTGTCGTGAGGTTTTGGTTAGCCCGACTACTATAGGATAGCTACTTTTAGCTTTTGTACGGTCCCTTCCGCTTTGGTATAGTTTTTGTTGTTAAATTTGACAAGATTCTAGGTGAATTAGAGTGAAGATTCAGAAAGTAGATGAATCCTTTATATATCTTTCTTTGTATGTTGATAGCTTCCAAAAGTCAAGAGGAAATTGAGAAGTTGAAGACTCAAGTAAGAAAGAAGTTTTGAGATGAATGTTTTGGGTGAGGTGAAAAAATTTCTTGGCATGGAGAGAAAAAGAGATAGACATTCAAAGAAACTCTTATTATCCCAGAAATAATACATACTTGAAGAGGGTACTAGCCTCAGCTAATCGGACATGAGCAAAAGTGTGTTTGATGGTATGCGAATTTGGGTTGTACCTGTTTTGTATTATTAACTTTGTTGAAATTTGAGGAAAGCTGCAATTTTGATAGGATTTAGTCCATGTTTGTTTTTCTTGCATAAAGGTTCAAAGTTGTTTCGGATTCATGTGATTAAGCTTTGTGCCATGGTATTCGTACTTAGATTGTTCCTTCCCTGTACTTTAAGTTAACCTTGTAGACTTTTAAGGAAAGTTCCAAGATTGAGAATGGTTTATCTTGTTCTTGGCTTAAACTATAATCTTGTATTGGAATTTGAGATCAATTTTGATATTTGTGTTTGATTTTAATGTTCAATGGCCTACCATAGTTACTAAAACTCGCTCTGCTTTCTTGTTTAACAGAAATGGGTTCAGTCATATGGTTATAGGCCTGCTCAGGCTCTGATGTTATGGAAACGTCTGTATGGGGATAATATTTGGGCTCAATGCAGTGAGGAATTAGAAGGTTTATTTTTTTTTTTTGCATACATATACTCTTGCTGTCAAAGTTTCTGTGTCGAAAGTGTTGATTGAGTTTATTGCTTATGGAAAGAGAAGGGTTCTGAATTTTTGTTTGGATCTTCCTTTATGTGCACTTTGTAATGTGATGGTAGTTACAGCTGATTGAATCATCAACGATACATTATCTTCCCAGGTTTGAATAAGGATTTCAGGAAAATGTTGGGTGAACATGCTGAATTTAAGACGTTAAACTTGAAAGATATTCTGACAGCGTCTGATGGAACTAAAAAGGTACATAGCTTGTGCAATATGTAGAATGTTGAGTGCCATCTGTTTTGTTTTTGATTCATCACTTAATAAATAGCACTCACAGGATCTTACAGATGTTATTCAAGTTGGAAGATGGTCTGGTAATAGAAACTGTTCTGATACCTTGTGAGCGGGGCAGGAACACTGTCTGTATATCTAGTCAAGTAGGTTGTGCCATGAATTGCCAGTTTTGCTATACCGGCAGGTAAAGCTCTAGCAGCCTTTTAACCTTTTGTTTATTTTTCCAATTTACAGTTCTTGAATTGGTTCCCTTTGTTTAAGTACATGAATCTACTATGCAGAATGGGTCTGAAGAGAAACTTATCCACTTCTGAGATAGTTGAGCAGGCTGTTTTAGCTCGACGCTTGTTATCCAGTGAAGTTGGACCAATTAGCAACGTTGTGTTTATGGTATGTGTATGCTTGAAGTGATTTCCTGAACTGAACATGTAATTTATTTTTGTGTATACATACAGTATTAACCAATAATTAACTTATGGTGTGGTGAATACCCTCGCTTGATGCAATGTGAGCAGCTTTGCTAATTTACCAAATCTAGCCCGCTTTGCTAGTATTGCTGAATTCTGTCTTCCTTGTGACCTTCTCCTAGGGCCATTATTCATGCTTCTCCCTGTTATTTAATCAGGCGTCATGGTTGACTGGAGTTGGTCTTTCTCTTCCACACTTAACAGCTATAATATTATGAAATCCTGTCTGAGACTTTGGCTCTATATTAATGAGGAATTAGAACAAAGACCCTTTGTCCCTTCTTCCTTATCTTTTTCTGTTATACTAAGCAATCAGTATTTGCTATTAGCAAATCTTGACAAATAACTCACTCCAGGGAATGGGAGAACCGCTTCACAACATTGAGAATGTCTTGAAAGCTGCAGACATAT</genome_strand>
        <mrna_strand>AAGACCGTTTGGTGTGTGTTTGAGGATGAGGCGAATTCGTTTCTCCGGCGGCAGCAGCAGCAACTGTGCTTTGCTTGGAACAACTTTTCCCTTCTCAAATTACACAAATTTTCCATTTAAAACCAAATCTTTTCTAAAGCTGCTTCCTTCAAGAACATCTCTTATCTTCACCACTCCTCATTATCGTTTAGTTACAGCAGCTCAACATTCTTCTACACCTCAAACCAACCTTTCTGTTGATTCTG.................................................................................GAGGTAGTGGCCGAAATGGGTATCCATTGAAGGATTCAAAAGTGGTTTTGAAAGGGATGAGATATACTGATCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGGTTCAGTCATATGGTTATAGGCCTGCTCAGGCTCTGATGTTATGGAAACGTCTGTATGGGGATAATATTTGGGCTCAATGCAGTGAGGAATTAGAAG.............................................................................................................................................................................................GTTTGAATAAGGATTTCAGGAAAATGTTGGGTGAACATGCTGAATTTAAGACGTTAAACTTGAAAGATATTCTGACAGCGTCTGATGGAACTAAAAAG............................................................................................ATGTTATTCAAGTTGGAAGATGGTCTGGTAATAGAAACTGTTCTGATACCTTGTGAGCGGGGCAGGAACACTGTCTGTATATCTAGTCAAGTAGGTTGTGCCATGAATTGCCAGTTTTGCTATACCGGCAG.................................................................................................AATGGGTCTGAAGAGAAACTTATCCACTTCTGAGATAGTTGAGCAGGCTGTTTTAGCTCGACGCTTGTTATCCAGTGAAGTTGGACCAATTAGCAACGTTGTGTTTATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGGGAGAACCGCTTCACAACATTGAGAATGTCTTTGAAGCTGCAGACATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341540" ref_strand="+" ref_description="SGN-E341540 [cTOE-23-I6]">
      <seq>tttgaggatgaggcgaattcgtttctccggcggcagcagcagcaactgtgctttgcttggaacaacttttcccttctcaaattacacaaattttccatttaaaaccaaatcttttctaaagctgcttccttcaagaacatctcttatcttcaccactcctcattatcgtttagttacagcagctcaacattcttctacacctcaaaccaacctttctgttgattctggaggtagtggccgaaatgggtatccattgaaggattcaaaagtggttttgaaagggatgagatatactgatcttgagaaatgggttcagtcatatggttataggcctgctcaggctctgatgttatggaaacgtctgtatggggataatatttgggctcaatgcagtgaggaattagaaggtttgaataaggatttcaggaaaatgttgggtgaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="109130" stop="106773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108830" g_stop="108604" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108603" i_stop="108523" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108522" g_stop="108446" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="304" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108445" i_stop="107404" i_length="1042">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107403" g_stop="107301" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="407" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107300" i_stop="107112" i_length="189">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107111" g_stop="107073" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="446" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E341540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108830" e_stop="108604"/>
          <exon e_start="108522" e_stop="108446"/>
          <exon e_start="107403" e_stop="107301"/>
          <exon e_start="107111" e_stop="107073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGGATGAGGCGAATTCGTTTCTCCGGCGGCAGCAGCAGCAACTGTGCTTTGCTTGGAACAACTTTTCCCTTCTCAAATTACACAAATTTTCCATTTAAAACCAAATCTTTTCTAAAGCTGCTTCCTTCAAGAACATCTCTTATCTTCACCACTCCTCATTATCGTTTAGTTACAGCAGCTCAACATTCTTCTACACCTCAAACCAACCTTTCTGTTGATTCTGGTAAGTACCCTTTACTTTATCTGCTGAGAGGTTCTTCTCTCCTTTGTTCTTGATTCTGTTTTGTTTGGTTGTGTATGGTAGGAGGTAGTGGCCGAAATGGGTATCCATTGAAGGATTCAAAAGTGGTTTTGAAAGGGATGAGATATACTGATCTTGAGGTATGTGTATTTAAGTTGTTGGCTGTGTGTCTTAGTTAGATTAGTATCAAATTGAGTAAAGTTGAAATCTTGATGCTGATTTAAGGTTTAGTATTGTTTTTTTTGTGTTTTTGAGATTAAGCTCGTTCACTTGGTAACTGAATTTCGGCTGTTGTGCTGTATATTTTGGTTGATTGAGTTGATATTTGAGGAAAGATGCAATCTTGATAGTTAATTAGTGATTTAGTCTTGTTTTCTGGTTAAAGATTCAAACTTAGTTTGTGTTCTTGAGATTAAGGCTAATGATATGTTGTCGTGAGGTTTTGGTTAGCCCGACTACTATAGGATAGCTACTTTTAGCTTTTGTACGGTCCCTTCCGCTTTGGTATAGTTTTTGTTGTTAAATTTGACAAGATTCTAGGTGAATTAGAGTGAAGATTCAGAAAGTAGATGAATCCTTTATATATCTTTCTTTGTATGTTGATAGCTTCCAAAAGTCAAGAGGAAATTGAGAAGTTGAAGACTCAAGTAAGAAAGAAGTTTTGAGATGAATGTTTTGGGTGAGGTGAAAAAATTTCTTGGCATGGAGAGAAAAAGAGATAGACATTCAAAGAAACTCTTATTATCCCAGAAATAATACATACTTGAAGAGGGTACTAGCCTCAGCTAATCGGACATGAGCAAAAGTGTGTTTGATGGTATGCGAATTTGGGTTGTACCTGTTTTGTATTATTAACTTTGTTGAAATTTGAGGAAAGCTGCAATTTTGATAGGATTTAGTCCATGTTTGTTTTTCTTGCATAAAGGTTCAAAGTTGTTTCGGATTCATGTGATTAAGCTTTGTGCCATGGTATTCGTACTTAGATTGTTCCTTCCCTGTACTTTAAGTTAACCTTGTAGACTTTTAAGGAAAGTTCCAAGATTGAGAATGGTTTATCTTGTTCTTGGCTTAAACTATAATCTTGTATTGGAATTTGAGATCAATTTTGATATTTGTGTTTGATTTTAATGTTCAATGGCCTACCATAGTTACTAAAACTCGCTCTGCTTTCTTGTTTAACAGAAATGGGTTCAGTCATATGGTTATAGGCCTGCTCAGGCTCTGATGTTATGGAAACGTCTGTATGGGGATAATATTTGGGCTCAATGCAGTGAGGAATTAGAAGGTTTATTTTTTTTTTTTGCATACATATACTCTTGCTGTCAAAGTTTCTGTGTCGAAAGTGTTGATTGAGTTTATTGCTTATGGAAAGAGAAGGGTTCTGAATTTTTGTTTGGATCTTCCTTTATGTGCACTTTGTAATGTGATGGTAGTTACAGCTGATTGAATCATCAACGATACATTATCTTCCCAGGTTTGAATAAGGATTTCAGGAAAATGTTGGGTGAACATG</genome_strand>
        <mrna_strand>TTTGAGGATGAGGCGAATTCGTTTCTCCGGCGGCAGCAGCAGCAACTGTGCTTTGCTTGGAACAACTTTTCCCTTCTCAAATTACACAAATTTTCCATTTAAAACCAAATCTTTTCTAAAGCTGCTTCCTTCAAGAACATCTCTTATCTTCACCACTCCTCATTATCGTTTAGTTACAGCAGCTCAACATTCTTCTACACCTCAAACCAACCTTTCTGTTGATTCTG.................................................................................GAGGTAGTGGCCGAAATGGGTATCCATTGAAGGATTCAAAAGTGGTTTTGAAAGGGATGAGATATACTGATCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGGTTCAGTCATATGGTTATAGGCCTGCTCAGGCTCTGATGTTATGGAAACGTCTGTATGGGGATAATATTTGGGCTCAATGCAGTGAGGAATTAGAAG.............................................................................................................................................................................................GTTTGAATAAGGATTTCAGGAAAATGTTGGGTGAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317319" ref_strand="+" ref_description="SGN-E317319 [cTOA-28-P2]">
      <seq>gcttttgttgactcactccactcaactttcttgatttgttgaaaattctgaaaaaaaagatcttacttttctgtaatttcttaattttcaagaagtggggttgttgaggaattttatgttttgatattgaatcactttattcagctttgttgattcgttattttcttgaaaattctgaaaaaaaaaaggtgttatctttttataatttctgaaatttcaagatttggggttgttgaggaatttcaagtattaatcttgactcaatttaatatctaaaaaaggtcttaatttcaagattatggcagcattagcacctgggattttgttgaagttattaaatgggatgaaatcaggggtgaaacctacaagtgaacataggagttcacttttgcaggttactgatattgttcctgcagatcttgatgagaagaatttatggccaaagcatggatttttcatcaaggtatcggattcttcgcattccatttatgtaagtcttccagatgagcaagatgatttggttttaagtaataaaatgcagctaggacagttcatttatgtcgatagattagagcccggttcgcctgttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="112837" stop="111647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112537" g_stop="111947" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E317319" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112537" e_stop="111947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTGTTGACTCACTCCACTCAACTTTCTTGATTTGTTGAAAATTCTGAAAAAAAAGATCTTACTTTTCTGTAATTTCTTAATTTTCAAGAAGTGGGGTTGTTGAGGAATTTTATGTTTTGATATTGAATCACTTTATTCAGCTTTGTTGATTCGTTATTTTCTTGAAAATTCTGAAAAAAAAAAGGTGTTATCTTTTTATAATTTCTGAAATTTCAAGATTTGGGGTTGTTGAGGAATTTCAAGTATTAATCTTGACTCAATTTAATATCTAAAAAAGGTCTTAATTTCAAGATTATGGCAGCATTAGCACCTGGGATTTTGTTGAAGTTATTAAATGGGATGAAATCAGGGGTGAAACCTACAAGTGAACATAGGAGTTCACTTTTGCAGGTTACTGATATTGTTCCTGCAGATCTTGATGAGAAGAATTTATGGCCAAAGCATGGATTTTTCATCAAGGTATCGGATTCTTCGCATTCCATTTATGTAAGTCTTCCAGATGAGCAAGATGATTTGGTTTTAAGTAATAAAATGCAGCTAGGACAGTTCATTTATGTCGATAGATTAGAGCCCGGTTCGCCTGTTCC</genome_strand>
        <mrna_strand>GCTTTTGTTGACTCACTCCACTCAACTTTCTTGATTTGTTGAAAATTCTGAAAAAAAAGATCTTACTTTTCTGTAATTTCTTAATTTTCAAGAAGTGGGGTTGTTGAGGAATTTTATGTTTTGATATTGAATCACTTTATTCAGCTTTGTTGATTCGTTATTTTCTTGAAAATTCTGAAAAAAAAAAGGTGTTATCTTTTTATAATTTCTGAAATTTCAAGATTTGGGGTTGTTGAGGAATTTCAAGTATTAATCTTGACTCAATTTAATATCTAAAAAAGGTCTTAATTTCAAGATTATGGCAGCATTAGCACCTGGGATTTTGTTGAAGTTATTAAATGGGATGAAATCAGGGGTGAAACCTACAAGTGAACATAGGAGTTCACTTTTGCAGGTTACTGATATTGTTCCTGCAGATCTTGATGAGAAGAATTTATGGCCAAAGCATGGATTTTTCATCAAGGTATCGGATTCTTCGCATTCCATTTATGTAAGTCTTCCAGATGAGCAAGATGATTTGGTTTTAAGTAATAAAATGCAGCTAGGACAGTTCATTTATGTCGATAGATTAGAGCCCGGTTCGCCTGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300269" ref_strand="+" ref_description="SGN-E300269 [cLEW-17-C17]">
      <seq>aaaaatatcactctgaaatggtcaatttcttctttgtttttaagagcttttgttgactcactccactcaactttcttgatttgttgaaaattctgaaaaaaaagatcttacttttctgtaatttcttaattttcaagaagtggggttgttgaggaattttatgttttgatattgaatcactttattcagctttgttgattcgttattttcttgaaaattctgaaaaaaaaaaggtgttatctttttataatttctgaaatttcaagatttggggttgttgaggaatttcaagtattaatcttgactcaatttaatatctaaaaaaggtcttaatttcaagattatggcagcattagcacctgggattttgttgaagttattaaatgggatgaaatcaggggtgaaacctacaagtgaacataggagttcacttttgcaggttactgatattgttcctgcagatcttgatgagaagaatttatggccaaagcatggatttttcatcaaggtatcggattcttcgcattccatttatgtaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="112882" stop="111741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112582" g_stop="112041" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E300269" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112582" e_stop="112041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATCACTCTGAAATGGTCAATTTCTTCTTTGTTTTTAAGAGCTTTTGTTGACTCACTCCACTCAACTTTCTTGATTTGTTGAAAATTCTGAAAAAAAAGATCTTACTTTTCTGTAATTTCTTAATTTTCAAGAAGTGGGGTTGTTGAGGAATTTTATGTTTTGATATTGAATCACTTTATTCAGCTTTGTTGATTCGTTATTTTCTTGAAAATTCTGAAAAAAAAAAGGTGTTATCTTTTTATAATTTCTGAAATTTCAAGATTTGGGGTTGTTGAGGAATTTCAAGTATTAATCTTGACTCAATTTAATATCTAAAAAAGGTCTTAATTTCAAGATTATGGCAGCATTAGCACCTGGGATTTTGTTGAAGTTATTAAATGGGATGAAATCAGGGGTGAAACCTACAAGTGAACATAGGAGTTCACTTTTGCAGGTTACTGATATTGTTCCTGCAGATCTTGATGAGAAGAATTTATGGCCAAAGCATGGATTTTTCATCAAGGTATCGGATTCTTCGCATTCCATTTATGTAAGTC</genome_strand>
        <mrna_strand>AAAAATATCACTCTGAAATGGTCAATTTCTTCTTTGTTTTTAAGAGCTTTTGTTGACTCACTCCACTCAACTTTCTTGATTTGTTGAAAATTCTGAAAAAAAAGATCTTACTTTTCTGTAATTTCTTAATTTTCAAGAAGTGGGGTTGTTGAGGAATTTTATGTTTTGATATTGAATCACTTTATTCAGCTTTGTTGATTCGTTATTTTCTTGAAAATTCTGAAAAAAAAAAGGTGTTATCTTTTTATAATTTCTGAAATTTCAAGATTTGGGGTTGTTGAGGAATTTCAAGTATTAATCTTGACTCAATTTAATATCTAAAAAAGGTCTTAATTTCAAGATTATGGCAGCATTAGCACCTGGGATTTTGTTGAAGTTATTAAATGGGATGAAATCAGGGGTGAAACCTACAAGTGAACATAGGAGTTCACTTTTGCAGGTTACTGATATTGTTCCTGCAGATCTTGATGAGAAGAATTTATGGCCAAAGCATGGATTTTTCATCAAGGTATCGGATTCTTCGCATTCCATTTATGTAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392932" ref_strand="+" ref_description="SGN-E392932 [TUS-37-B8](-)">
      <seq>aagtgggtcagctcaattgaggacatgattgacttttccacctcggtgttaggtcaaaacgttgtcctacgaacaactgagaatataaaagggtcaaagggagatattttaattggatcggtgaaaagaaccaacgatgggaaagtaacgaaatcggtatcttgtcatcagagtttgtttccgtatttggtttattattgtcattcggttccaaaggttcgggtttatgaagcggatatattggatccgaattcaaaggctaagattaatcatggtgttgccatttgtcatgtggacacgtcagcatggggagcgaatcatggagcttttacggcactcgggtcgggacccggaaagattgaggtttgtcattggatctttgaaaatgatatgaattgggcagttgctgattaaaatggatcttccaactttcatattcgggtcggatcaattacggttcttgttcaaattatcattgtccaattttaatgcatcttgacctctttttgttttttaattatttattagacttataatgaacttactgtaattactacgatggtaatttcaaaggcctatttacttattgtaatataattacaataacgcagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="118494" stop="117283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118194" g_stop="117573" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E392932" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118194" e_stop="117573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGCGTCAGCTCAATTGAGGACATGATTGACTTTTCCACCTCGGTGTTAGGTCAAAACGTTGTCCTACGAACAACTGAGAATATAAAAGGGTCAAAGGGAGATATTTTAATTGGATCGGTGAAAAGAACCAACGATGGGAAAGTAACGAAATCGGTATCTTGTCATCAGAGTTTGTTTCCGTATTTGGTTTATTATTGTCATTCGGTTCCAAAGGTTCGGGTTTATGAAGCGGATATATTGGATCCGAATTCAAAGGCTAAGATTAATCATGGTGTTGCCATTTGTCATGTGGACACGTCAGCATGGGGAGCGAATCATGGAGCTTTTACGGCACTCGGGTCGGGACCCGGAAAGATTGAGGTTTGTCATTGGATCTTTGAAAATGATATGAATTGGGCAGTTGCTGATTAAAATGGATCTTCCAACTTTCATATTCGGGTCGGATCAATTACGGTTCTTGTTCAAATTATCATTGTCCAATTTTAATGCATCTTGACCTCTTTTTGTTTTTTAATTATTTATTAGACTTATAATGAACTTACTGTAATTACTACGATGGTAATTTCAAAGGCCTATTTACTTATTGTAATATAATTACAGTAACGCAGAGTCAAATATT</genome_strand>
        <mrna_strand>AAGTGGGTCAGCTCAATTGAGGACATGATTGACTTTTCCACCTCGGTGTTAGGTCAAAACGTTGTCCTACGAACAACTGAGAATATAAAAGGGTCAAAGGGAGATATTTTAATTGGATCGGTGAAAAGAACCAACGATGGGAAAGTAACGAAATCGGTATCTTGTCATCAGAGTTTGTTTCCGTATTTGGTTTATTATTGTCATTCGGTTCCAAAGGTTCGGGTTTATGAAGCGGATATATTGGATCCGAATTCAAAGGCTAAGATTAATCATGGTGTTGCCATTTGTCATGTGGACACGTCAGCATGGGGAGCGAATCATGGAGCTTTTACGGCACTCGGGTCGGGACCCGGAAAGATTGAGGTTTGTCATTGGATCTTTGAAAATGATATGAATTGGGCAGTTGCTGATTAAAATGGATCTTCCAACTTTCATATTCGGGTCGGATCAATTACGGTTCTTGTTCAAATTATCATTGTCCAATTTTAATGCATCTTGACCTCTTTTTGTTTTTTAATTATTTATTAGACTTATAATGAACTTACTGTAATTACTACGATGGTAATTTCAAAGGCCTATTTACTTATTGTAATATAATTACAATAACGCAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393316" ref_strand="+" ref_description="SGN-E393316 [TUS-38-A7](-)">
      <seq>ctgagaatttaaaaggggtcaaagggagatattttaattggatcggtgaaaagaaccaacgatgcgaacccaacgaaatcggtatcttgtcatcagagtttgtttccgtatttggtttattattgtcattcggttccaaaggttcgggtttatgaagcggatatattggatccgaattcaaaggctaagattaatcatggtgttgccatttgtcatgtggacacgtcagcatggggagcgaatcatggagcttttacggcactcgggtcgggacccggaaagattgaggtttgtcattggatctttgaaaatgatatgaattgggcagttgctgattaaaatggatcttccaactttcatattcgggtcggatcaattacggttcttgttcaaattatcattgtccaattttaatgcatcttgacctctttttgttttttaattatttattagacttataatgaacttactgtaattactacgatggtaatttcaaaggcctatttacttattgtaatataattacagtaacgcagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="118418" stop="117283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118118" g_stop="117573" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E393316" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118118" e_stop="117573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGAATATAAAA-GGGTCAAAGGGAGATATTTTAATTGGATCGGTGAAAAGAACCAACGATGGGAAAGTAACGAAATCGGTATCTTGTCATCAGAGTTTGTTTCCGTATTTGGTTTATTATTGTCATTCGGTTCCAAAGGTTCGGGTTTATGAAGCGGATATATTGGATCCGAATTCAAAGGCTAAGATTAATCATGGTGTTGCCATTTGTCATGTGGACACGTCAGCATGGGGAGCGAATCATGGAGCTTTTACGGCACTCGGGTCGGGACCCGGAAAGATTGAGGTTTGTCATTGGATCTTTGAAAATGATATGAATTGGGCAGTTGCTGATTAAAATGGATCTTCCAACTTTCATATTCGGGTCGGATCAATTACGGTTCTTGTTCAAATTATCATTGTCCAATTTTAATGCATCTTGACCTCTTTTTGTTTTTTAATTATTTATTAGACTTATAATGAACTTACTGTAATTACTACGATGGTAATTTCAAAGGCCTATTTACTTATTGTAATATAATTACAGTAACGCAGAGTCAAATATT</genome_strand>
        <mrna_strand>CTGAGAATTTAAAAGGGGTCAAAGGGAGATATTTTAATTGGATCGGTGAAAAGAACCAACGATGCGAACCCAACGAAATCGGTATCTTGTCATCAGAGTTTGTTTCCGTATTTGGTTTATTATTGTCATTCGGTTCCAAAGGTTCGGGTTTATGAAGCGGATATATTGGATCCGAATTCAAAGGCTAAGATTAATCATGGTGTTGCCATTTGTCATGTGGACACGTCAGCATGGGGAGCGAATCATGGAGCTTTTACGGCACTCGGGTCGGGACCCGGAAAGATTGAGGTTTGTCATTGGATCTTTGAAAATGATATGAATTGGGCAGTTGCTGATTAAAATGGATCTTCCAACTTTCATATTCGGGTCGGATCAATTACGGTTCTTGTTCAAATTATCATTGTCCAATTTTAATGCATCTTGACCTCTTTTTGTTTTTTAATTATTTATTAGACTTATAATGAACTTACTGTAATTACTACGATGGTAATTTCAAAGGCCTATTTACTTATTGTAATATAATTACAGTAACGCAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398008" ref_strand="+" ref_description="SGN-E398008 [TUS-38-A7]">
      <seq>cacaaacacaacattctcaaaaaagaaataattaaaatcttcacaaagaaatgcatataaacactttgcttctctctattttcctacttttcagtgtgattgtggccggaaacagagaaaactccggcgactctgtaaacccttttacaccaaaagcttattcaattcgttactggaacaaacgaatttcaaataaattacccaaaccatggtttcttctgaacaaagcttcaccattaaatgctgcacaatttgcaaaatactcaaagctagcaacaggggatcaagaatctctgtcaaatgaaattcaatcattttgctcctctgcaaatctgctctgttttcctgatatttcaacaagtttagataaacatggccaagatacccaattttcttcatatatgagcaaaaatttcaccaattatggcaataaattgcctcgtggatttgatagtttcaaaaaatacgccgaaaatgataacctccctgttaattctttccggcaatatagccgcggtggcgctggccatgatgatatattttctacttacgcaccaaatggcaatgtaattgatcaaagcttcaacacttatggcacaggccttgctgcttttggcgttggccaattcaaaatctacgggggccaacgtcaatgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="121004" stop="118743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120704" g_stop="120610" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120609" i_stop="119672" i_length="938">
            <donor d_prob="0.309" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119671" g_stop="119167" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="600" r_length="505" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119166" i_stop="119100" i_length="67">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119099" g_stop="119043" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="658" r_length="58" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E398008" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120704" e_stop="120610"/>
          <exon e_start="119671" e_stop="119167"/>
          <exon e_start="119099" e_stop="119043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAACACAACATTCTCAAAAAAGAAATAATTAAAATCTTCACAAAGAAATGCATATAAACACTTTGCTTCTCTCTATTTTCCTACTTTTCAGTGTAAGTTTGTCATGTTAGTTTAAGTTATTTTGTCTTTTCACTTTCCCAAGTTAGATTACTACTCATTTCTTTATAAACTAAAGTTAAATTTACTTTTTTTAATATTATTAATCTTCTTTTAATATTACTTCCCTTTAAATATAGAAAGTTTAACATAATGAGGAAATTACCTAATGATTGCGTCTTTTTAAAGATATTTATTAACGATAAGTTGGTAAGAACACTCTTTATTTTTAAAATGAGTTATGAAGTACTCCCTCCGTATATGTCATTCTTATTATAAGTAATTGATTCACAATGCTTATCATTTTATATAAATACTCTTTATTGCATTACTCTATAAAATTTAATTTTTAGAAAAGAAATCTCAACAAACAATTAAAAATAAATGATATCATTTATTGAAAAGTTGACTTCAAAAAAGAATTAAGATAGGATAAGATTGTAAACTTACTTAGTTTCTAATGCGAGTGAAATCTAGAAAGATAACACATAAAAAAACAAAAAGAGTATGTGCAAGTTAAGAACATCACTTATTTAAAAACATAGAGAAAATTTCATAAAGTTGAAAAAAATGATAACACCCTCGAACTTAACACAAAATATTAATTACATCATCGAACTATCAACAACCTTTAAAGATACTCATCTTATGACTAATTAACTTAGATACGCCCTCGATTTGCTACTTGAAATAACAAATGATTTCAAAAAACTTTAATAGAAACATGAAACTCTTTAAATAAAATCGAGAGAAATGTTTATAACGTTCCAAACTTGATCGAAAGTGTATTTAAGTTGAGTCAATCAATTAGCAAAACATATTTAAGGCTGTTAATAATTAATGAATGAAATTAATAATTGACGTGCGTTTGTATTACTTGTTTCGTACTTATAAATTACAATGCTCTTTTTAACACATTTTGTATGTTATTCAGGTGATTGTGGCCGGAAACAGAGAAAACTCCGGCGACTCTGTAAACCCTTTTACACCAAAAGCTTATTCAATTCGTTACTGGAACAAACGAATTTCAAATAAATTACCCAAACCATGGTTTCTTCTGAACAAAGCTTCACCATTAAATGCTGCACAATTTGCAAAATACTCAAAGCTAGCAACAGGGGATCAAGAATCTCTGTCAAATGAAATTCAATCATTTTGCTCCTCTGCAAATCTGCTCTGTTTTCCTGATATTTCAACAAGTTTAGATAAACATGGCCAAGATACCCAATTTTCTTCATATATGAGCAAAAATTTCACCAATTATGGCAATAAATTGCCTCGTGGATTTGATAGTTTCAAAAAATACGCCGAAAATGATAACCTCCCTGTTAATTCTTTCCGGCAATATAGCCGCGGTGGCGCTGGCCATGATGATATATTTTCTACTTACGCACCAAATGGCAATGTAATTGATCAAAGCTTCAACACTTATGGCACAGGTCAGTTCAGATTTAAAAAATTTAAAACTCGTAAATTTTAAATCCTGAATCTATCTCTGCTTCGCAGGCCTTGCTGCTTTTGGCGTTGGCCAATTCAAAATCTAC-GGGGCCAACGTCAATGTAC</genome_strand>
        <mrna_strand>CACAAACACAACATTCTCAAAAAAGAAATAATTAAAATCTTCACAAAGAAATGCATATAAACACTTTGCTTCTCTCTATTTTCCTACTTTTCAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGTGGCCGGAAACAGAGAAAACTCCGGCGACTCTGTAAACCCTTTTACACCAAAAGCTTATTCAATTCGTTACTGGAACAAACGAATTTCAAATAAATTACCCAAACCATGGTTTCTTCTGAACAAAGCTTCACCATTAAATGCTGCACAATTTGCAAAATACTCAAAGCTAGCAACAGGGGATCAAGAATCTCTGTCAAATGAAATTCAATCATTTTGCTCCTCTGCAAATCTGCTCTGTTTTCCTGATATTTCAACAAGTTTAGATAAACATGGCCAAGATACCCAATTTTCTTCATATATGAGCAAAAATTTCACCAATTATGGCAATAAATTGCCTCGTGGATTTGATAGTTTCAAAAAATACGCCGAAAATGATAACCTCCCTGTTAATTCTTTCCGGCAATATAGCCGCGGTGGCGCTGGCCATGATGATATATTTTCTACTTACGCACCAAATGGCAATGTAATTGATCAAAGCTTCAACACTTATGGCACAG...................................................................GCCTTGCTGCTTTTGGCGTTGGCCAATTCAAAATCTACGGGGGCCAACGTCAATGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203760" ref_strand="+" ref_description="SGN-E203760 [cLEC-17-M10]">
      <seq>acaaacacaacattctcaaaaaagaaataattaaaatcttcacaaagaaatgcatataaacactttgcttctctctattttcctacttttcagtgtgattgtggccggaaacagagaaaactccggcgactctgtaaacccttttacaccaaaagcttattcaattcgttactggaacaaacgaatttcaaataaattacccaaaccatggtttcttctgaacaaagcttcaccattaaatgctgcacaatttgcaaaatactcaaagctagcaacaggggatcaagaatctctgtcaaatgaaattcaatcattttgctcctctgcaaatctgctctgttttcctgatatttcaacaagtttagataaacatggccaagatacccaattttcttcatatatgagcaaaaatttcaccaattatggcaataaattgcctcgtggatttgatagtttcaaaaaatacgccgaaaatgataacctccctgttaattctttccggcaatatagccgcggtggcgctggccatgatgatatattttctacttacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="121003" stop="118915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120703" g_stop="120610" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120609" i_stop="119672" i_length="938">
            <donor d_prob="0.309" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119671" g_stop="119215" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="551" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E203760" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120703" e_stop="120610"/>
          <exon e_start="119671" e_stop="119215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACACAACATTCTCAAAAAAGAAATAATTAAAATCTTCACAAAGAAATGCATATAAACACTTTGCTTCTCTCTATTTTCCTACTTTTCAGTGTAAGTTTGTCATGTTAGTTTAAGTTATTTTGTCTTTTCACTTTCCCAAGTTAGATTACTACTCATTTCTTTATAAACTAAAGTTAAATTTACTTTTTTTAATATTATTAATCTTCTTTTAATATTACTTCCCTTTAAATATAGAAAGTTTAACATAATGAGGAAATTACCTAATGATTGCGTCTTTTTAAAGATATTTATTAACGATAAGTTGGTAAGAACACTCTTTATTTTTAAAATGAGTTATGAAGTACTCCCTCCGTATATGTCATTCTTATTATAAGTAATTGATTCACAATGCTTATCATTTTATATAAATACTCTTTATTGCATTACTCTATAAAATTTAATTTTTAGAAAAGAAATCTCAACAAACAATTAAAAATAAATGATATCATTTATTGAAAAGTTGACTTCAAAAAAGAATTAAGATAGGATAAGATTGTAAACTTACTTAGTTTCTAATGCGAGTGAAATCTAGAAAGATAACACATAAAAAAACAAAAAGAGTATGTGCAAGTTAAGAACATCACTTATTTAAAAACATAGAGAAAATTTCATAAAGTTGAAAAAAATGATAACACCCTCGAACTTAACACAAAATATTAATTACATCATCGAACTATCAACAACCTTTAAAGATACTCATCTTATGACTAATTAACTTAGATACGCCCTCGATTTGCTACTTGAAATAACAAATGATTTCAAAAAACTTTAATAGAAACATGAAACTCTTTAAATAAAATCGAGAGAAATGTTTATAACGTTCCAAACTTGATCGAAAGTGTATTTAAGTTGAGTCAATCAATTAGCAAAACATATTTAAGGCTGTTAATAATTAATGAATGAAATTAATAATTGACGTGCGTTTGTATTACTTGTTTCGTACTTATAAATTACAATGCTCTTTTTAACACATTTTGTATGTTATTCAGGTGATTGTGGCCGGAAACAGAGAAAACTCCGGCGACTCTGTAAACCCTTTTACACCAAAAGCTTATTCAATTCGTTACTGGAACAAACGAATTTCAAATAAATTACCCAAACCATGGTTTCTTCTGAACAAAGCTTCACCATTAAATGCTGCACAATTTGCAAAATACTCAAAGCTAGCAACAGGGGATCAAGAATCTCTGTCAAATGAAATTCAATCATTTTGCTCCTCTGCAAATCTGCTCTGTTTTCCTGATATTTCAACAAGTTTAGATAAACATGGCCAAGATACCCAATTTTCTTCATATATGAGCAAAAATTTCACCAATTATGGCAATAAATTGCCTCGTGGATTTGATAGTTTCAAAAAATACGCCGAAAATGATAACCTCCCTGTTAATTCTTTCCGGCAATATAGCCGCGGTGGCGCTGGCCATGATGATATATTTTCTACTTACG</genome_strand>
        <mrna_strand>ACAAACACAACATTCTCAAAAAAGAAATAATTAAAATCTTCACAAAGAAATGCATATAAACACTTTGCTTCTCTCTATTTTCCTACTTTTCAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGTGGCCGGAAACAGAGAAAACTCCGGCGACTCTGTAAACCCTTTTACACCAAAAGCTTATTCAATTCGTTACTGGAACAAACGAATTTCAAATAAATTACCCAAACCATGGTTTCTTCTGAACAAAGCTTCACCATTAAATGCTGCACAATTTGCAAAATACTCAAAGCTAGCAACAGGGGATCAAGAATCTCTGTCAAATGAAATTCAATCATTTTGCTCCTCTGCAAATCTGCTCTGTTTTCCTGATATTTCAACAAGTTTAGATAAACATGGCCAAGATACCCAATTTTCTTCATATATGAGCAAAAATTTCACCAATTATGGCAATAAATTGCCTCGTGGATTTGATAGTTTCAAAAAATACGCCGAAAATGATAACCTCCCTGTTAATTCTTTCCGGCAATATAGCCGCGGTGGCGCTGGCCATGATGATATATTTTCTACTTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248156" ref_strand="+" ref_description="SGN-E248156 [cLEF-55-M19]">
      <seq>aaaaagaaataattaaaatcttcacaaagaaatgcatataaacactttgcttctctctattttcctacttttcagtgtgattgtggccggaaacagagaaaactccggcgactctgtaaacccttttacaccaaaagcttattcaattcgttactggaacaaacgaatttcaaataaattacccaaaccatggtttcttctgaacaaagcttcaccattaaatgctgcacaatttgcaaaatactcaaagctagcaacaggggatcaagaatctctgtcaaatgaaattcaatcattttgctcctctgcaaatctgctctgttttcctgatatttcaacaagtttagataaacatggccaagatacccaattttcttcatatatgagcaaaaatttcaccaattatggcaataaattgcctcgtggatttgatagtttcaaaaaatacgccgaaaatgataacctccctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="120985" stop="118976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120685" g_stop="120610" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120609" i_stop="119672" i_length="938">
            <donor d_prob="0.309" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119671" g_stop="119276" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="472" r_length="396" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E248156" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120685" e_stop="120610"/>
          <exon e_start="119671" e_stop="119276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAAATAATTAAAATCTTCACAAAGAAATGCATATAAACACTTTGCTTCTCTCTATTTTCCTACTTTTCAGTGTAAGTTTGTCATGTTAGTTTAAGTTATTTTGTCTTTTCACTTTCCCAAGTTAGATTACTACTCATTTCTTTATAAACTAAAGTTAAATTTACTTTTTTTAATATTATTAATCTTCTTTTAATATTACTTCCCTTTAAATATAGAAAGTTTAACATAATGAGGAAATTACCTAATGATTGCGTCTTTTTAAAGATATTTATTAACGATAAGTTGGTAAGAACACTCTTTATTTTTAAAATGAGTTATGAAGTACTCCCTCCGTATATGTCATTCTTATTATAAGTAATTGATTCACAATGCTTATCATTTTATATAAATACTCTTTATTGCATTACTCTATAAAATTTAATTTTTAGAAAAGAAATCTCAACAAACAATTAAAAATAAATGATATCATTTATTGAAAAGTTGACTTCAAAAAAGAATTAAGATAGGATAAGATTGTAAACTTACTTAGTTTCTAATGCGAGTGAAATCTAGAAAGATAACACATAAAAAAACAAAAAGAGTATGTGCAAGTTAAGAACATCACTTATTTAAAAACATAGAGAAAATTTCATAAAGTTGAAAAAAATGATAACACCCTCGAACTTAACACAAAATATTAATTACATCATCGAACTATCAACAACCTTTAAAGATACTCATCTTATGACTAATTAACTTAGATACGCCCTCGATTTGCTACTTGAAATAACAAATGATTTCAAAAAACTTTAATAGAAACATGAAACTCTTTAAATAAAATCGAGAGAAATGTTTATAACGTTCCAAACTTGATCGAAAGTGTATTTAAGTTGAGTCAATCAATTAGCAAAACATATTTAAGGCTGTTAATAATTAATGAATGAAATTAATAATTGACGTGCGTTTGTATTACTTGTTTCGTACTTATAAATTACAATGCTCTTTTTAACACATTTTGTATGTTATTCAGGTGATTGTGGCCGGAAACAGAGAAAACTCCGGCGACTCTGTAAACCCTTTTACACCAAAAGCTTATTCAATTCGTTACTGGAACAAACGAATTTCAAATAAATTACCCAAACCATGGTTTCTTCTGAACAAAGCTTCACCATTAAATGCTGCACAATTTGCAAAATACTCAAAGCTAGCAACAGGGGATCAAGAATCTCTGTCAAATGAAATTCAATCATTTTGCTCCTCTGCAAATCTGCTCTGTTTTCCTGATATTTCAACAAGTTTAGATAAACATGGCCAAGATACCCAATTTTCTTCATATATGAGCAAAAATTTCACCAATTATGGCAATAAATTGCCTCGTGGATTTGATAGTTTCAAAAAATACGCCGAAAATGATAACCTCCCTGTT</genome_strand>
        <mrna_strand>AAAAAGAAATAATTAAAATCTTCACAAAGAAATGCATATAAACACTTTGCTTCTCTCTATTTTCCTACTTTTCAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGTGGCCGGAAACAGAGAAAACTCCGGCGACTCTGTAAACCCTTTTACACCAAAAGCTTATTCAATTCGTTACTGGAACAAACGAATTTCAAATAAATTACCCAAACCATGGTTTCTTCTGAACAAAGCTTCACCATTAAATGCTGCACAATTTGCAAAATACTCAAAGCTAGCAACAGGGGATCAAGAATCTCTGTCAAATGAAATTCAATCATTTTGCTCCTCTGCAAATCTGCTCTGTTTTCCTGATATTTCAACAAGTTTAGATAAACATGGCCAAGATACCCAATTTTCTTCATATATGAGCAAAAATTTCACCAATTATGGCAATAAATTGCCTCGTGGATTTGATAGTTTCAAAAAATACGCCGAAAATGATAACCTCCCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378302" ref_strand="+" ref_description="SGN-E378302 [TUS-38-A7]">
      <seq>caaacacaacattctcaaaaaattcataattaaaatggaaacaaagaaatgcatataaacactttgcttctctctattttcctacttttcagtgtgattgtggccggaaacccagaaaactccggcgactctgtaaacccttttacaccaaaagcttattcaattcgttactggaacaaacgaatttcaaataaattacccaaaccatggtttcttctgaacaaagcttcaccattaaatgctgcacaatttgcaaaatactcaaagctagcaacaggggatcaagaatctctgtcaaatgaaattcaatcattttgctcctctgcaaatctgctctgttttcctgatatttcaacaagtttagataaacatggccaagatacccaattttcttcatatatgagcaaaaatttcaccaattatggcaataaattgcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="121002" stop="119026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120702" g_stop="120610" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120609" i_stop="119672" i_length="938">
            <donor d_prob="0.309" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119671" g_stop="119326" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="439" r_length="346" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E378302" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120702" e_stop="120610"/>
          <exon e_start="119671" e_stop="119326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACAACATTCTCAAAAAAGAAATAATTAAAATCTTCACAAAGAAATGCATATAAACACTTTGCTTCTCTCTATTTTCCTACTTTTCAGTGTAAGTTTGTCATGTTAGTTTAAGTTATTTTGTCTTTTCACTTTCCCAAGTTAGATTACTACTCATTTCTTTATAAACTAAAGTTAAATTTACTTTTTTTAATATTATTAATCTTCTTTTAATATTACTTCCCTTTAAATATAGAAAGTTTAACATAATGAGGAAATTACCTAATGATTGCGTCTTTTTAAAGATATTTATTAACGATAAGTTGGTAAGAACACTCTTTATTTTTAAAATGAGTTATGAAGTACTCCCTCCGTATATGTCATTCTTATTATAAGTAATTGATTCACAATGCTTATCATTTTATATAAATACTCTTTATTGCATTACTCTATAAAATTTAATTTTTAGAAAAGAAATCTCAACAAACAATTAAAAATAAATGATATCATTTATTGAAAAGTTGACTTCAAAAAAGAATTAAGATAGGATAAGATTGTAAACTTACTTAGTTTCTAATGCGAGTGAAATCTAGAAAGATAACACATAAAAAAACAAAAAGAGTATGTGCAAGTTAAGAACATCACTTATTTAAAAACATAGAGAAAATTTCATAAAGTTGAAAAAAATGATAACACCCTCGAACTTAACACAAAATATTAATTACATCATCGAACTATCAACAACCTTTAAAGATACTCATCTTATGACTAATTAACTTAGATACGCCCTCGATTTGCTACTTGAAATAACAAATGATTTCAAAAAACTTTAATAGAAACATGAAACTCTTTAAATAAAATCGAGAGAAATGTTTATAACGTTCCAAACTTGATCGAAAGTGTATTTAAGTTGAGTCAATCAATTAGCAAAACATATTTAAGGCTGTTAATAATTAATGAATGAAATTAATAATTGACGTGCGTTTGTATTACTTGTTTCGTACTTATAAATTACAATGCTCTTTTTAACACATTTTGTATGTTATTCAGGTGATTGTGGCCGGAAACAGAGAAAACTCCGGCGACTCTGTAAACCCTTTTACACCAAAAGCTTATTCAATTCGTTACTGGAACAAACGAATTTCAAATAAATTACCCAAACCATGGTTTCTTCTGAACAAAGCTTCACCATTAAATGCTGCACAATTTGCAAAATACTCAAAGCTAGCAACAGGGGATCAAGAATCTCTGTCAAATGAAATTCAATCATTTTGCTCCTCTGCAAATCTGCTCTGTTTTCCTGATATTTCAACAAGTTTAGATAAACATGGCCAAGATACCCAATTTTCTTCATATATGAGCAAAAATTTCACCAATTATGGCAATAAATTGCCTC</genome_strand>
        <mrna_strand>CAAACACAACATTCTCAAAAAATTCATAATTAAAATGGAAACAAAGAAATGCATATAAACACTTTGCTTCTCTCTATTTTCCTACTTTTCAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGTGGCCGGAAACCCAGAAAACTCCGGCGACTCTGTAAACCCTTTTACACCAAAAGCTTATTCAATTCGTTACTGGAACAAACGAATTTCAAATAAATTACCCAAACCATGGTTTCTTCTGAACAAAGCTTCACCATTAAATGCTGCACAATTTGCAAAATACTCAAAGCTAGCAACAGGGGATCAAGAATCTCTGTCAAATGAAATTCAATCATTTTGCTCCTCTGCAAATCTGCTCTGTTTTCCTGATATTTCAACAAGTTTAGATAAACATGGCCAAGATACCCAATTTTCTTCATATATGAGCAAAAATTTCACCAATTATGGCAATAAATTGCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203736" ref_strand="+" ref_description="SGN-E203736 [cLEC-17-M9]">
      <seq>acaaacacaacattctcaaaaaagaaataattaaaatcttcacaaagaaatgcatataaacactttgcttctctctattttcctacttttcagtgtgattgtggccggaaacagagaaaactccggcgactctgtaaacccttttacaccaaaagcttattcaattcgttactggaacaaacgaatttcaaataaattacccaaaccatggtttcttctgaacaaagcttcaccattaaatgctgcacaatttgcaaaatactcaaagctagcaacaggggatcaagaatctctgtcaaatgaaattcaatcattttgctcctctgcaaatctgctctgttttcctgatatttcaacaagtttagataaacatggccaagatacccaattttcttcatatatgagcaaaaatttcaccaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="121003" stop="119042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120703" g_stop="120610" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120609" i_stop="119672" i_length="938">
            <donor d_prob="0.309" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119671" g_stop="119342" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="424" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E203736" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120703" e_stop="120610"/>
          <exon e_start="119671" e_stop="119342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACACAACATTCTCAAAAAAGAAATAATTAAAATCTTCACAAAGAAATGCATATAAACACTTTGCTTCTCTCTATTTTCCTACTTTTCAGTGTAAGTTTGTCATGTTAGTTTAAGTTATTTTGTCTTTTCACTTTCCCAAGTTAGATTACTACTCATTTCTTTATAAACTAAAGTTAAATTTACTTTTTTTAATATTATTAATCTTCTTTTAATATTACTTCCCTTTAAATATAGAAAGTTTAACATAATGAGGAAATTACCTAATGATTGCGTCTTTTTAAAGATATTTATTAACGATAAGTTGGTAAGAACACTCTTTATTTTTAAAATGAGTTATGAAGTACTCCCTCCGTATATGTCATTCTTATTATAAGTAATTGATTCACAATGCTTATCATTTTATATAAATACTCTTTATTGCATTACTCTATAAAATTTAATTTTTAGAAAAGAAATCTCAACAAACAATTAAAAATAAATGATATCATTTATTGAAAAGTTGACTTCAAAAAAGAATTAAGATAGGATAAGATTGTAAACTTACTTAGTTTCTAATGCGAGTGAAATCTAGAAAGATAACACATAAAAAAACAAAAAGAGTATGTGCAAGTTAAGAACATCACTTATTTAAAAACATAGAGAAAATTTCATAAAGTTGAAAAAAATGATAACACCCTCGAACTTAACACAAAATATTAATTACATCATCGAACTATCAACAACCTTTAAAGATACTCATCTTATGACTAATTAACTTAGATACGCCCTCGATTTGCTACTTGAAATAACAAATGATTTCAAAAAACTTTAATAGAAACATGAAACTCTTTAAATAAAATCGAGAGAAATGTTTATAACGTTCCAAACTTGATCGAAAGTGTATTTAAGTTGAGTCAATCAATTAGCAAAACATATTTAAGGCTGTTAATAATTAATGAATGAAATTAATAATTGACGTGCGTTTGTATTACTTGTTTCGTACTTATAAATTACAATGCTCTTTTTAACACATTTTGTATGTTATTCAGGTGATTGTGGCCGGAAACAGAGAAAACTCCGGCGACTCTGTAAACCCTTTTACACCAAAAGCTTATTCAATTCGTTACTGGAACAAACGAATTTCAAATAAATTACCCAAACCATGGTTTCTTCTGAACAAAGCTTCACCATTAAATGCTGCACAATTTGCAAAATACTCAAAGCTAGCAACAGGGGATCAAGAATCTCTGTCAAATGAAATTCAATCATTTTGCTCCTCTGCAAATCTGCTCTGTTTTCCTGATATTTCAACAAGTTTAGATAAACATGGCCAAGATACCCAATTTTCTTCATATATGAGCAAAAATTTCACCAATTAT</genome_strand>
        <mrna_strand>ACAAACACAACATTCTCAAAAAAGAAATAATTAAAATCTTCACAAAGAAATGCATATAAACACTTTGCTTCTCTCTATTTTCCTACTTTTCAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGTGGCCGGAAACAGAGAAAACTCCGGCGACTCTGTAAACCCTTTTACACCAAAAGCTTATTCAATTCGTTACTGGAACAAACGAATTTCAAATAAATTACCCAAACCATGGTTTCTTCTGAACAAAGCTTCACCATTAAATGCTGCACAATTTGCAAAATACTCAAAGCTAGCAACAGGGGATCAAGAATCTCTGTCAAATGAAATTCAATCATTTTGCTCCTCTGCAAATCTGCTCTGTTTTCCTGATATTTCAACAAGTTTAGATAAACATGGCCAAGATACCCAATTTTCTTCATATATGAGCAAAAATTTCACCAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744489" ref_strand="+" ref_description="SGN-E744489 [GI|170479]">
      <seq>tctctctcttcatctctgtttcacaccaaagaaatgcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatggtcagacagcaaatgggggagaccaaaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggatacatcttcatggggaccgagtcacggagcgtttgtcgcactcgggtcgggacccgggaaaatagaagtttgtcattggatctttgagaatgatatgacttgggcaattgctgattgagaaaaaaaaaagaaatgaaataatatgcaaaatttctaattcgggtcgaaccgggtgtgttacaagaagaagaaaaaaggtaccactggtttgacttttatagtaattattattattatagtcttaatttatattttgagtaattttcgtgtaagtttctctttgccttcattaagtatgaatggctatcaatttacactatttgttatgtaatcattttattgttgactcatatttgagcaaggtaatgtagttattgccagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126085" stop="123049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125785" g_stop="125684" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="123349" g_length="2090"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="2192" r_length="2090" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E744489" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2192</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125785" e_stop="125684"/>
          <exon e_start="125438" e_stop="123349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAAAAAAAAAGAAATGAAATAATATGCAAAATTTCTAATTCGGGTCGAACCGGGTGTGTTACAAGAAGAAGAAAAAAGGTACCACTGGTTTGACTTTTATAGTAATTATTATTATTATAGTCTTAATTTATATTTTGAGTAATTTTCGTGTAAGTTTCTCTTTGCCTTCATTAAGTATGAATGGCTATCAATTTACACTATTTGTTATGTAATCATTTTATTGTTGACTCATATTTGAGCAAGGTAATGTAGTTATTGCCAGATG</genome_strand>
        <mrna_strand>TCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAAAAAAAAAGAAATGAAATAATATGCAAAATTTCTAATTCGGGTCGAACCGGGTGTGTTACAAGAAGAAGAAAAAAGGTACCACTGGTTTGACTTTTATAGTAATTATTATTATTATAGTCTTAATTTATATTTTGAGTAATTTTCGTGTAAGTTTCTCTTTGCCTTCATTAAGTATGAATGGCTATCAATTTACACTATTTGTTATGTAATCATTTTATTGTTGACTCATATTTGAGCAAGGTAATGTAGTTATTGCCAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735038" ref_strand="+" ref_description="SGN-E735038 [LB14BA11]">
      <seq>tgaggctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggatacatcttcatggggaccgagtcacggagcgtttgtcgcactcgggtcgggacccgggaaaatagaagtttgtcattggatctttgagaatgatatgacttgggcaattgctgattgagaaaaaaaaaagaaatgaaataatatgcaaaatttctaattcgggtcgaaccgggtgtgttacaagaagaagaaaaaaggtaccactggtttgacttttatagtaattattattattatagtcttaatttatattttgagtaattttcgtgtaagtttctctttgccttcattaagtatgaatggctatcaatttacactatttgttatgtaatcattttattgttgactcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124117" stop="123081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123822" g_stop="123372" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E735038" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123822" e_stop="123372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAAAAAAAAAGAAATGAAATAATATGCAAAATTTCTAATTCGGGTCGAACCGGGTGTGTTACAAGAAGAAGAAAAAAGGTACCACTGGTTTGACTTTTATAGTAATTATTATTATTATAGTCTTAATTTATATTTTGAGTAATTTTCGTGTAAGTTTCTCTTTGCCTTCATTAAGTATGAATGGCTATCAATTTACACTATTTGTTATGTAATCATTTTATTGTTGACTCATATTTGAGCAA</genome_strand>
        <mrna_strand>TGAGGCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAAAAAAAAAGAAATGAAATAATATGCAAAATTTCTAATTCGGGTCGAACCGGGTGTGTTACAAGAAGAAGAAAAAAGGTACCACTGGTTTGACTTTTATAGTAATTATTATTATTATAGTCTTAATTTATATTTTGAGTAATTTTCGTGTAAGTTTCTCTTTGCCTTCATTAAGTATGAATGGCTATCAATTTACACTATTTGTTATGTAATCATTTTATTGTTGACTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245715" ref_strand="+" ref_description="SGN-E245715 [cLEF-48-E22]">
      <seq>gagacgaaaccgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggataccatcttcatggggaccgagtcacggagcgtttgtcgcactcgggtcgggacccgggaaaatagaagtttgtcattggatctttgagaatgatatgacttgggcaattgctgattgagaaaaaaaaaagaaatgaaataatatgcaaaatttctaattcgggtcgaaccgggtgtgttacaagaagaagaaaaaaggtaccactggtttgacttttatagtaattattattattatagtcttaatttatattttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124337" stop="123175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124037" g_stop="123475" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E245715" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124037" e_stop="123475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACGAAA-CGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATA-CATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAAAAAAAAAGAAATGAAATAATATGCAAAATTTCTAATTCGGGTCGAACCGGGTGTGTTACAAGAAGAAGAAAAAAGGTACCACTGGTTTGACTTTTATAGTAATTATTATTATTATAGTCTTAATTTATATTTTGAG</genome_strand>
        <mrna_strand>GAGACGAAACCGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACCATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAAAAAAAAAGAAATGAAATAATATGCAAAATTTCTAATTCGGGTCGAACCGGGTGTGTTACAAGAAGAAGAAAAAAGGTACCACTGGTTTGACTTTTATAGTAATTATTATTATTATAGTCTTAATTTATATTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717006" ref_strand="+" ref_description="SGN-E717006 [FB18CF11]">
      <seq>atttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggatacatcttcatggggaccgagtcacggagcgtttgtcgcactcgggtcgggacccgggaaaatagaagtttgtcattggatctttgagaatgatatgacttgggcaattgctgattgagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124723" stop="123304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124423" g_stop="123604" g_length="820"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="820" r_length="820" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E717006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124423" e_stop="123604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAAAAAAAAA</genome_strand>
        <mrna_strand>ATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732216" ref_strand="+" ref_description="SGN-E732216 [LB01CD01]">
      <seq>cccattgatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggatacatcttcatggggaccgagtcacggagcgtttgtcgcactcgggtcgggacccgggaaaatagaagtttgtcattggatctttgagaatgatatgacttgggcaattgctgattgagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124680" stop="123304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124382" g_stop="123604" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="779" r_length="779" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E732216" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124382" e_stop="123604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAAAAAAAAA</genome_strand>
        <mrna_strand>CCCATTGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714442" ref_strand="+" ref_description="SGN-E714442 [FB11BH02]">
      <seq>aacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggatacatcttcatggggaccgagtcacggagcgtttgtcgcactcgggtcgggacccgggaaaatagaagtttgtcattggatctttgagaatgatatgacttgggcaattgctgattgagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124610" stop="123304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124310" g_stop="123604" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E714442" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124310" e_stop="123604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAAAAAAAAA</genome_strand>
        <mrna_strand>AACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708486" ref_strand="+" ref_description="SGN-E708486 [FA35DF03]">
      <seq>cgtttgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggatacatcttcatggggaccgagtcacggagcgtttgtcgcactcgggtcgggacccgggaaaatagaagtttgtcattggatctttgagaatgatatgacttgggcaattgctgattgagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124737" stop="123305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124442" g_stop="123605" g_length="838"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="837" r_length="837" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E708486" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124442" e_stop="123605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAAAAAAAA</genome_strand>
        <mrna_strand>CGT-TTGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716037" ref_strand="+" ref_description="SGN-E716037 [FB15DG11]">
      <seq>atcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggatacatcttcatggggaccgagtcacggagcgtttgtcgcactcgggtcgggacccggaaaaatagaagtttgtcattggatctttgagaatgatatgacttgggcaattgctgattgagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124727" stop="123305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124427" g_stop="123605" g_length="823"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="823" r_length="823" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E716037" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124427" e_stop="123605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAAAAAAAA</genome_strand>
        <mrna_strand>ATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGAAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698040" ref_strand="+" ref_description="SGN-E698040 [FA05AC10]">
      <seq>gtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggatacatcttcatggggaccgagtcacggagcgtttgtcgcactcgggtcgggacccgggaaaatagaagtttgtcattggatctttgagaatgatatgacttgggcaattgctgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124324" stop="123316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124024" g_stop="123616" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E698040" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124024" e_stop="123616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTG</genome_strand>
        <mrna_strand>GTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247154" ref_strand="+" ref_description="SGN-E247154 [cLEF-46-D21]">
      <seq>atgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaagtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggatacatcttcatggggaccgagtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124529" stop="123408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124229" g_stop="123708" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E247154" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124229" e_stop="123708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCAC</genome_strand>
        <mrna_strand>ATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAAGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697502" ref_strand="+" ref_description="SGN-E697502 [FA03AG02]">
      <seq>cgctatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggaatactcttcatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124725" stop="123419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124427" g_stop="123719" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E697502" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124427" e_stop="123719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGG</genome_strand>
        <mrna_strand>CGCTATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGAATACTCTTCATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344052" ref_strand="+" ref_description="SGN-E344052 [cTOF-12-N7]">
      <seq>aaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatgggtgtcgcgatttgccacgtggatacatcttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124679" stop="123422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124379" g_stop="123722" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E344052" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124379" e_stop="123722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCAT-GGTGTCGCGATTTGCCACGTGGATACATCTTCAT</genome_strand>
        <mrna_strand>AAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGGTGTCGCGATTTGCCACGTGGATACATCTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697332" ref_strand="+" ref_description="SGN-E697332 [FA02AH10]">
      <seq>ccgtcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggaccccgaaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggatacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124752" stop="123427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124453" g_stop="123727" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E697332" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124453" e_stop="123727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGA-CCCG-AATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATC</genome_strand>
        <mrna_strand>CCGTCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCCGAAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228239" ref_strand="+" ref_description="SGN-E228239 [cLED-2-J17]">
      <seq>ttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggatacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124547" stop="123427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124247" g_stop="123727" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E228239" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124247" e_stop="123727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATC</genome_strand>
        <mrna_strand>TTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710280" ref_strand="+" ref_description="SGN-E710280 [FA54DG11]">
      <seq>gaccggatatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctaagaagcggatattttggaccccgaattccaaggttaagatcaatcatggtgtcgcgatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124688" stop="123441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124392" g_stop="123741" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E710280" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124392" e_stop="123741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGA-CCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGC</genome_strand>
        <mrna_strand>GACCGGATATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTAAGAAGCGGATATTTTGGACCCCGAATTCCAAGGTTAAGATCAATCATGGTGTCGCGATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545100" ref_strand="+" ref_description="SGN-E545100 [TUS-67-M10]">
      <seq>tggaggtaatggtccatctgaggcttttaatagttacagagatcaatcgaatgttggagatgacacgttcacaacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggaaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcgcaggatttagcttcgttgagtgaggttaacggtggcaaaaaggtgaataacaggtggattgagcccgggaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggcgattgctgcgaaattacctttttctacttcaaagattgatgagctgaagaaaattttccatgcggccaatgattcacaggtggcaaagatgattggcgatgcgctgagtgagtgtgaaagagcaccgagccctgnggagacgaaacaatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgtaatgtggtggttcgaacaactgagaatacaaatggatcaaaggggaatatcatgattggatcaataaaaggaaatcatggtggaaaagttaccaaatcagtatcatgtcatcaaacgctgtacccttccttattgtattactgtcattcggttcctaaagtccgagtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124914" stop="123502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124614" g_stop="123802" g_length="813"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="813" r_length="813" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E545100" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124614" e_stop="123802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTA</genome_strand>
        <mrna_strand>TGGAGGTAATGGTCCATCTGAGGCTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACGTTCACAACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGNGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAAATCATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292743" ref_strand="+" ref_description="SGN-E292743 [cLET-11-P7]">
      <seq>tgcctatgccagatataaaggatgagatgcctagaaggttctttctgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatctttcacgccggtgatgagtctcatgtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124528" stop="123514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124228" g_stop="123814" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E292743" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124228" e_stop="123814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAA</genome_strand>
        <mrna_strand>TGCCTATGCCAGATATAAAGGATGAGATGCCTAGAAGGTTCTTTCTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTTCACGCCGGTGATGAGTCTCATGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269360" ref_strand="+" ref_description="SGN-E269360 [cLEM-18-O16]">
      <seq>actttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124697" stop="123522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124397" g_stop="123822" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E269360" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124397" e_stop="123822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCG</genome_strand>
        <mrna_strand>ACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705330" ref_strand="+" ref_description="SGN-E705330 [FA26DC09]">
      <seq>agggcttatcggctcaacatttacaaattatggtcagacagcaaatgggggagaccaaaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatccaacggtggaaaagttactaaatcagtatcatgtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125029" stop="123560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124734" g_stop="123860" g_length="875"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="876" r_length="876" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E705330" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124734" e_stop="123860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAAT-CAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATC</genome_strand>
        <mrna_strand>AGGGCTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269562" ref_strand="+" ref_description="SGN-E269562 [cLEM-2-C8]">
      <seq>atgtattcactacttacggcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124768" stop="123607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124468" g_stop="123907" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E269562" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124468" e_stop="123907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGT</genome_strand>
        <mrna_strand>ATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697370" ref_strand="+" ref_description="SGN-E697370 [FA02CD02]">
      <seq>tgagcccggaaagtttttccgggacaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaacatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcacatgggaatatcatgattggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124578" stop="123611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124278" g_stop="123911" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E697370" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124278" e_stop="123911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGAT</genome_strand>
        <mrna_strand>TGAGCCCGGAAAGTTTTTCCGGGACAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAACATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCACATGGGAATATCATGATTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700274" ref_strand="+" ref_description="SGN-E700274 [FA12CF07]">
      <seq>ggtgaccagtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatggtcagacagcaaatgggggagaccaaaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125111" stop="123628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124811" g_stop="123928" g_length="884"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="884" r_length="884" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E700274" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124811" e_stop="123928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGG</genome_strand>
        <mrna_strand>GGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245027" ref_strand="+" ref_description="SGN-E245027 [cLEF-2-P20]">
      <seq>cacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124851" stop="123700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124551" g_stop="124000" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E245027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124551" e_stop="124000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGAT</genome_strand>
        <mrna_strand>CACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309740" ref_strand="+" ref_description="SGN-E309740 [cLEY-26-J5]">
      <seq>ggaggtaatggtccatctgaggcttttaatagttacagagatcaatcgaatgttggagatgacacgttcacaacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggaaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcgcaggatttagcttcgttgagtgaggttaacggtggcaaaaaggtgaataacaggtggattgagcccgggaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggcgattgctgcgaaattacctttttctacttcaaagattgatgagctgaagaaaattttccatgcggccaatgattcacaggtggcaaagatgattggcgatgcgctgagtgagtgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124913" stop="123756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124613" g_stop="124056" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E309740" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124613" e_stop="124056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAA</genome_strand>
        <mrna_strand>GGAGGTAATGGTCCATCTGAGGCTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACGTTCACAACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319966" ref_strand="+" ref_description="SGN-E319966 [cTOB-31-M11]">
      <seq>tttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagaatggtacaatcatgcctatgccagatataaaggataagatgcctaaaagggcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124932" stop="123798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124632" g_stop="124098" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E319966" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124632" e_stop="124098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCT</genome_strand>
        <mrna_strand>TTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAATGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGGCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698975" ref_strand="+" ref_description="SGN-E698975 [FA08AG03]">
      <seq>ggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatggtcagacagcaaatgggggagaccaaaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtaccatcatgcctatgccagatataaaggataagatgccctaaaaggtcctttttgcccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaaaaaaatccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125153" stop="123815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124853" g_stop="124115" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E698975" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124853" e_stop="124115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATG-CCTAAAAGGTCCTTTTTG-CCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAAT-CTTCC</genome_strand>
        <mrna_strand>GGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACCATCATGCCTATGCCAGATATAAAGGATAAGATGCCCTAAAAGGTCCTTTTTGCCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAAAAAATCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272693" ref_strand="+" ref_description="SGN-E272693 [cLEM-21-A12]">
      <seq>aaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaacgtactgatgtattcactacttacagcaaagggggtgatcacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttcatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124977" stop="123820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124677" g_stop="124120" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E272693" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124677" e_stop="124120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAAT</genome_strand>
        <mrna_strand>AAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAACGTACTGATGTATTCACTACTTACAGCAAAGGGGGTGATCACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTCATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730742" ref_strand="+" ref_description="SGN-E730742 [LA25AC03]">
      <seq>ctgtcaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatggtcagacagcaaatgggggagaccaaaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggagctcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctnaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125205" stop="123827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124906" g_stop="124127" g_length="780"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="780" r_length="780" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E730742" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124906" e_stop="124127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGA</genome_strand>
        <mrna_strand>CTGTCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGCTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTNAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339851" ref_strand="+" ref_description="SGN-E339851 [cTOF-3-K9]">
      <seq>gtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatggtcagacagcaaatgggggagaccaaaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125103" stop="123827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124803" g_stop="124127" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E339851" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124803" e_stop="124127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGA</genome_strand>
        <mrna_strand>GTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704511" ref_strand="+" ref_description="SGN-E704511 [FA24CA05]">
      <seq>aaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatggtcagacagcaaatgggggagaccaaaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125220" stop="123841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124920" g_stop="124141" g_length="780"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="780" r_length="780" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E704511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124920" e_stop="124141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAA</genome_strand>
        <mrna_strand>AAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320812" ref_strand="+" ref_description="SGN-E320812 [cTOB-27-K8]">
      <seq>tttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagtnttagcatcgttgatggaggtcaacggtggtanaaaggtgaataaccggtgggttgagcccggaaagttttttccgggagaagaggttggagagtggtacaatcatgcctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="124932" stop="123921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124632" g_stop="124221" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E320812" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124632" e_stop="124221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAG-TTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATG</genome_strand>
        <mrna_strand>TTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTNTTAGCATCGTTGATGGAGGTCAACGGTGGTANAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTTCCGGGAGAAGAGGTTGGAGAGTGGTACAATCATGCCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270778" ref_strand="+" ref_description="SGN-E270778 [cLEM-6-P6]">
      <seq>aattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatggtcagacagcaaatgggggagaccaaaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125227" stop="124042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124927" g_stop="124342" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E270778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124927" e_stop="124342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAAC</genome_strand>
        <mrna_strand>AATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210485" ref_strand="+" ref_description="SGN-E210485 [cLEC-35-M8]">
      <seq>tctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatggtcagacagcaaatgggggagaccaaaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125327" stop="124092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125027" g_stop="124392" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E210485" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125027" e_stop="124392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTC</genome_strand>
        <mrna_strand>TCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298428" ref_strand="+" ref_description="SGN-E298428 [cLET-41-P8]">
      <seq>ttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatggtcagacagcaaatgggggagaccaaaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125328" stop="124097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125028" g_stop="124397" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E298428" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125028" e_stop="124397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACA</genome_strand>
        <mrna_strand>TTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272650" ref_strand="+" ref_description="SGN-E272650 [cLEM-21-L14]">
      <seq>ggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatggtcagacagcaatgggggagaccaaaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggcaaagggggtaatgacccacatatcaatttcaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125288" stop="124113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124988" g_stop="124413" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E272650" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124988" e_stop="124413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACT</genome_strand>
        <mrna_strand>GGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGC-AATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272327" ref_strand="+" ref_description="SGN-E272327 [cLEM-19-J8]">
      <seq>acaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatggtcagacagcaaatgggggagaccaaaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125317" stop="124153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125017" g_stop="124453" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E272327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125017" e_stop="124453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTA</genome_strand>
        <mrna_strand>ACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246923" ref_strand="+" ref_description="SGN-E246923 [cLEF-41-F20]">
      <seq>aattctttcaagcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatggtcagacagcaaatgggggagaccaaaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125354" stop="124185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125054" g_stop="124485" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E246923" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125054" e_stop="124485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCA</genome_strand>
        <mrna_strand>AATTCTTTCAAGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247380" ref_strand="+" ref_description="SGN-E247380 [cLEF-46-I14]">
      <seq>ttgaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatggtcagacagcaaatgggggagaccaaaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125424" stop="124224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125124" g_stop="124524" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E247380" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125124" e_stop="124524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCA</genome_strand>
        <mrna_strand>TTGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210254" ref_strand="+" ref_description="SGN-E210254 [cLEC-35-C7]">
      <seq>tctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatgggtcagacagcaaatgggggagaccaaaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125327" stop="124224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125027" g_stop="124524" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E210254" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125027" e_stop="124524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTAT-GGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCA</genome_strand>
        <mrna_strand>TCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359141" ref_strand="+" ref_description="SGN-E359141 [cLHT-11-A13]">
      <seq>gaggttctccccgtgaccaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcatatagcacaagtactgctgggggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtaccagaaattcacaatatactcacaagaagcaaatgctggtgaccaatatttcaaaagctacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatggtcagacagcaaatgggggagaccaaaaattcacatcttatggtttcaacggcaatgttcctgaaaatcacttcaccaactatggtgctggaggtaatggtccatctgaaacttttaacagttacagagatcaatcgaatgttggagatgacacattcactacctatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125332" stop="124234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125032" g_stop="124534" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E359141" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125032" e_stop="124534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTTCTCCCCGTGAC-AATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTA-CAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGT</genome_strand>
        <mrna_strand>GAGGTTCTCCCCGTGACCAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCATATAGCACAAGTACTGCTGGGGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACCAGAAATTCACAATATACTCACAAGAAGCAAATGCTGGTGACCAATATTTCAAAAGCTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCACTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAACAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269303" ref_strand="+" ref_description="SGN-E269303 [cLEM-18-F9]">
      <seq>gaggttctccccttgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcacgcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaataagccaatgctggtgaccagtatttcaaaagttacagcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatggtcatacagcaaatgggggagaccaaaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatttcaccaactatggtgctggatgtaatggtccatctgaaacttttaatagttacagagatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125332" stop="124268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125032" g_stop="124568" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E269303" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125032" e_stop="124568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAAT</genome_strand>
        <mrna_strand>GAGGTTCTCCCCTTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCACGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAATAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACAGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCATACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGATGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271799" ref_strand="+" ref_description="SGN-E271799 [cLEM-8-A10]">
      <seq>tgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaagcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatggtcagacagcaaatgggggagaccaaaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatttcaccaactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125531" stop="124320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125231" g_stop="124620" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E271799" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125231" e_stop="124620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTAT</genome_strand>
        <mrna_strand>TGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAAGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262061" ref_strand="+" ref_description="SGN-E262061 [cLEG-58-P16]">
      <seq>tgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcancaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatggtcagacagcaaatgggggagaccaaaattcacatcttatggtttcaacggcaatgttcctgaaatcatttcacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125718" stop="124323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125418" g_stop="124628" g_length="791"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E262061" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125418" e_stop="124628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCA-CAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCA</genome_strand>
        <mrna_strand>TGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCANCAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACC-AAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTG-AAATCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268730" ref_strand="+" ref_description="SGN-E268730 [cLEM-16-B12]">
      <seq>gaaaaacacaggggagatatccatttggccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaagcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatggtcagacagcaaatgggggagaccaaaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125483" stop="124331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125183" g_stop="124631" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E268730" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125183" e_stop="124631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATT</genome_strand>
        <mrna_strand>GAAAAACACAGGGGAGATATCCATTTGGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAAGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344915" ref_strand="+" ref_description="SGN-E344915 [cTOF-21-F14]">
      <seq>agccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatggtcagacagcaaatggggggagaccaaaaattacatcttatggtttcaacggcaatgttcctgaaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125641" stop="124333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125341" g_stop="124633" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E344915" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125341" e_stop="124633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAAT-GGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCA</genome_strand>
        <mrna_strand>AGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGGAGACCAAAAATT-ACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698835" ref_strand="+" ref_description="SGN-E698835 [FA07DA05]">
      <seq>gaacctggaattccttttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagcactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaccatttacaaattatggtcagacagcaaatgggggagaccaaaaattcacatcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125398" stop="124362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125114" g_stop="124662" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E698835" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125114" e_stop="124662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTAT</genome_strand>
        <mrna_strand>GAACCTGGAATTCCTTTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGCACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCACCATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707766" ref_strand="+" ref_description="SGN-E707766 [FA33DF10]">
      <seq>ccctttaccttctctctcttcatctctgtttcacaccaaagaaatgcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126095" stop="124400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125795" g_stop="125684" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="124700" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="851" r_length="739" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E707766" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125795" e_stop="125684"/>
          <exon e_start="125438" e_stop="124700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCACCTTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTC</genome_strand>
        <mrna_strand>CCCTTTACCTTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726183" ref_strand="+" ref_description="SGN-E726183 [LA11AC07]">
      <seq>catctctgtttccaccaaagaaatgcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagttacggcaaaaatggggaatggtgctaatggtgaattcgtcagctatggaaatgacccaaatgttatcggctcaacatttacaaattatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126075" stop="124402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125775" g_stop="125684" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="124702" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="830" r_length="739" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E726183" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125775" e_stop="125684"/>
          <exon e_start="125438" e_stop="124702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCC-AATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAAT-GGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGG</genome_strand>
        <mrna_strand>CATCTCTGTTTC-CACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACCCAAATGTTATCGGCTCAACATTTACAAATTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703596" ref_strand="+" ref_description="SGN-E703596 [FA21DG06]">
      <seq>cttcaccttctctctcttcatctctgtttcacaccaaagaaatgcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatgggaatgacacaaaatgtatcggctcaacatttacaaattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126093" stop="124403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125793" g_stop="125684" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="124703" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="846" r_length="736" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E703596" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125793" e_stop="125684"/>
          <exon e_start="125438" e_stop="124703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACCTTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATG</genome_strand>
        <mrna_strand>CTTCACCTTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGGAATGACACAAAATGTATCGGCTCAACATTTACAAATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252631" ref_strand="+" ref_description="SGN-E252631 [cLEG-20-N1]">
      <seq>tgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125718" stop="124439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125418" g_stop="124739" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E252631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125418" e_stop="124739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATG</genome_strand>
        <mrna_strand>TGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333838" ref_strand="+" ref_description="SGN-E333838 [cTOD-24-A17]">
      <seq>ttctctctcttcatctctgtttcacaccaaagaaatgcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126086" stop="124489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125786" g_stop="125684" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="124789" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="753" r_length="650" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E333838" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125786" e_stop="125684"/>
          <exon e_start="125438" e_stop="124789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTA</genome_strand>
        <mrna_strand>TTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709219" ref_strand="+" ref_description="SGN-E709219 [FA51AC01]">
      <seq>ctctctcttcatctctgtttccaccaaagaaatgcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattcccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagcccatgctggtgaccagtatttcaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126084" stop="124491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125784" g_stop="125684" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="124791" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="749" r_length="649" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E709219" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125784" e_stop="125684"/>
          <exon e_start="125438" e_stop="124791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTC-CGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGT</genome_strand>
        <mrna_strand>CTCTCTCTTCATCTCTGTTTC-CACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCCATGCTGGTGACCAGTATTTCAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269942" ref_strand="+" ref_description="SGN-E269942 [cLEM-7-M19]">
      <seq>caaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtgaccagtatttcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125663" stop="124492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125363" g_stop="124792" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E269942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125363" e_stop="124792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAG</genome_strand>
        <mrna_strand>CAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332814" ref_strand="+" ref_description="SGN-E332814 [cTOD-18-P21]">
      <seq>ttctctctcttcatctctgtttcacaccaaagaaatgcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggangtgtacagaaattacaatatactcacaagaagccaatgctgggtgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126086" stop="124505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125786" g_stop="125684" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="124805" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="737" r_length="634" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E332814" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125786" e_stop="125684"/>
          <exon e_start="125438" e_stop="124805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCT-GGTGACC</genome_strand>
        <mrna_strand>TTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGANGTGTACAGAAATT-ACAATATACTCACAAGAAGCCAATGCTGGGTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720646" ref_strand="+" ref_description="SGN-E720646 [FC11BF07]">
      <seq>attctactcttcaccttctctctcttcatctctgtttcacaccaaagaaatgcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagccaatgctggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126101" stop="124507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125801" g_stop="125684" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="124807" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="750" r_length="632" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E720646" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125801" e_stop="125684"/>
          <exon e_start="125438" e_stop="124807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTACTCTTCACCTTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGA</genome_strand>
        <mrna_strand>ATTCTACTCTTCACCTTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342448" ref_strand="+" ref_description="SGN-E342448 [cTOF-8-G22]">
      <seq>tctgtttcacaccaaagaaatgcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctgggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggacangnaggtgtacagaaattcacaatatactcacaagaagccaatgctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126071" stop="124508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125771" g_stop="125684" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="124808" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="720" r_length="632" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E342448" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125771" e_stop="125684"/>
          <exon e_start="125438" e_stop="124808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCT-GGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTG</genome_strand>
        <mrna_strand>TCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGACANGNAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332808" ref_strand="+" ref_description="SGN-E332808 [cTOD-18-N21]">
      <seq>ttctctctcttcatctctgtttcacaccaaagaaatgcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcanggcaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgatcaaggaacaggaggtgtacagaaattcacaatatactcacaagaagcccatgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126086" stop="124510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125786" g_stop="125684" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="124810" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="732" r_length="629" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E332808" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125786" e_stop="125684"/>
          <exon e_start="125438" e_stop="124810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGG</genome_strand>
        <mrna_strand>TTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCANGGCAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCCATGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327952" ref_strand="+" ref_description="SGN-E327952 [cTOC-22-P13]">
      <seq>tcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattcccgatcaggaacangangtgtacagaaattcacaatatactcacaagaagccaatgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126001" stop="124510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125701" g_stop="125684" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="124810" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="647" r_length="629" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E327952" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125701" e_stop="125684"/>
          <exon e_start="125438" e_stop="124810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATT-CCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGG</genome_strand>
        <mrna_strand>TCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCCGATC-AGGAACANGANGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271299" ref_strand="+" ref_description="SGN-E271299 [cLEM-5-N23]">
      <seq>ttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatttcacttcctattccgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125572" stop="124566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125272" g_stop="124866" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E271299" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125272" e_stop="124866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGAT</genome_strand>
        <mrna_strand>TTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245617" ref_strand="+" ref_description="SGN-E245617 [cLEF-43-L3]">
      <seq>tctgtttcacaccaaagaaatgcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcangcaaattcacaaattacgcggcgaatgccaatgaccccaatctgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126071" stop="124583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125771" g_stop="125684" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="124883" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="644" r_length="556" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E245617" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125771" e_stop="125684"/>
          <exon e_start="125438" e_stop="124883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATT</genome_strand>
        <mrna_strand>TCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCANGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271824" ref_strand="+" ref_description="SGN-E271824 [cLEM-8-K12]">
      <seq>accttctctctcttcatctctgtttcacaccaaagaaatgcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaagcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgccaatgaccccaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126089" stop="124587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125789" g_stop="125684" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="124887" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="658" r_length="552" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E271824" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125789" e_stop="125684"/>
          <exon e_start="125438" e_stop="124887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTG</genome_strand>
        <mrna_strand>ACCTTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAAGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270694" ref_strand="+" ref_description="SGN-E270694 [cLEM-6-O12]">
      <seq>tgtcaccaagtcttgaaaaacacagtggagatatccattttgccactgacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaattacgcggcgaatgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125497" stop="124601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125197" g_stop="124901" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E270694" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125197" e_stop="124901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCA</genome_strand>
        <mrna_strand>TGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTGACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272242" ref_strand="+" ref_description="SGN-E272242 [cLEM-19-G12]">
      <seq>ttgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcatgcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaattcctatagcacaagtactgctggaggttcaggcaaattcacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125609" stop="124617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125309" g_stop="124917" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E272242" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125309" e_stop="124917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAAT</genome_strand>
        <mrna_strand>TTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCATGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270436" ref_strand="+" ref_description="SGN-E270436 [cLEM-1-I16]">
      <seq>tctgtttcacaccaaagaaatgcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaaaccnaannannaanttnnncctttttcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaagcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgaccaaagtttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126071" stop="124662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125771" g_stop="125684" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="124962" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="584" r_length="496" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E270436" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125771" e_stop="125684"/>
          <exon e_start="125438" e_stop="124962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAG-AAA-C-----A--AA--T----C----TCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAAT</genome_strand>
        <mrna_strand>TCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAAACCNAANNANNAANTTNNNCCTTTTTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAAGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272328" ref_strand="+" ref_description="SGN-E272328 [cLEM-19-J20]">
      <seq>aaatgcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126054" stop="124674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125754" g_stop="125684" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="124974" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="536" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E272328" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125754" e_stop="125684"/>
          <exon e_start="125438" e_stop="124974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGAC</genome_strand>
        <mrna_strand>AAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331227" ref_strand="+" ref_description="SGN-E331227 [cTOD-6-E12]">
      <seq>tctctcttcatctctgtttcacaccaaagaaatgcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatggcaatgttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126083" stop="124676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125783" g_stop="125684" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="124976" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="563" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E331227" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125783" e_stop="125684"/>
          <exon e_start="125438" e_stop="124976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTG</genome_strand>
        <mrna_strand>TCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268731" ref_strand="+" ref_description="SGN-E268731 [cLEM-16-B18]">
      <seq>ttcaccttctttctcttcatctctgtttcacaccaaagaaaggcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaattacgcctctgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126092" stop="124687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125792" g_stop="125684" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="124987" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="561" r_length="452" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E268731" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125792" e_stop="125684"/>
          <exon e_start="125438" e_stop="124987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCTTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGG</genome_strand>
        <mrna_strand>TTCACCTTCTTTCTCTTCATCTCTGTTTCACACCAAAGAAAGGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268523" ref_strand="+" ref_description="SGN-E268523 [cLEI-13-E4]">
      <seq>tcaccttctctctcttcatctctgtttcacaccaaagaaatgcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgtaaattctttcaggcgatatggtagaggttctccccgtgacaataaatttgacaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126091" stop="124699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125791" g_stop="125684" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="124999" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="548" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E268523" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125791" e_stop="125684"/>
          <exon e_start="125438" e_stop="124999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCTTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTA</genome_strand>
        <mrna_strand>TCACCTTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723382" ref_strand="+" ref_description="SGN-E723382 [FC20BC09]">
      <seq>tttcacaccaaagaaatgcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaaaaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaatttgttgctgatcaaaatgcactcaccacacagctccatactttttgctcttcagcaaatctcatgtgtgcaccaaatctgtcaccaattcttgaaaaacacagtggagatatccattttgccacttactgtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaaaaactactctgaaggaaaaaacatccctgtaaattctttcaggcgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126067" stop="124738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125767" g_stop="125684" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="125038" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="485" r_length="401" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E723382" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125767" e_stop="125684"/>
          <exon e_start="125438" e_stop="125038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATA</genome_strand>
        <mrna_strand>TTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAAAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAATTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACTTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAAATCTGTCACCAATTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACTGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAAAACTACTCTGAAGGAAAAAACATCCCTGTAAATTCTTTCAGGCGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260233" ref_strand="+" ref_description="SGN-E260233 [cLEG-53-G16]">
      <seq>tgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcaacaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctgaaggagaaaacatccctgaaaattctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="125718" stop="124746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125418" g_stop="125046" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E260233" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125418" e_stop="125046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTC</genome_strand>
        <mrna_strand>TGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAACAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGAAAATTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705516" ref_strand="+" ref_description="SGN-E705516 [FA27BE05]">
      <seq>tgcacactaaaattcatcttcctccctgcatcttacttcttcttctgatctcactaccatctttcaatgttacttgtaagtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccacggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccacatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattgcagttaacactttcaaaaactactctgaaggagaaaacatccctgtaaattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126051" stop="124747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125751" g_stop="125684" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="125047" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="461" r_length="393" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E705516" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125751" e_stop="125684"/>
          <exon e_start="125438" e_stop="125047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTT-GTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTT</genome_strand>
        <mrna_strand>TGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGATCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTACTTGTAAGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCACGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCACATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGCAGTTAACACTTTCAAAAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246906" ref_strand="+" ref_description="SGN-E246906 [cLEF-41-P13]">
      <seq>ttcaccttctctctcttcatctctgtttcacaccaaagaaatgcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126092" stop="124775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125792" g_stop="125684" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="125075" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="473" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E246906" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125792" e_stop="125684"/>
          <exon e_start="125438" e_stop="125075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCTTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTG</genome_strand>
        <mrna_strand>TTCACCTTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272841" ref_strand="+" ref_description="SGN-E272841 [cLEM-25-C8]">
      <seq>tctctcttcatctctgtttcacaccaaagaaatgcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggattaacactttcaagaactactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126083" stop="124777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125783" g_stop="125684" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="125077" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="461" r_length="361" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E272841" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125783" e_stop="125684"/>
          <exon e_start="125438" e_stop="125077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTC</genome_strand>
        <mrna_strand>TCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGA-TTAACACTTTCAAGAACTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247396" ref_strand="+" ref_description="SGN-E247396 [cLEF-46-H15]">
      <seq>accttctctctcttcatctctgtttcacaccaaagaaatgcacactaaaattcatcttcctccctgcatcttacttcttcttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaagcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacactttcaagaactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126089" stop="124779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125789" g_stop="125684" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="125079" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="466" r_length="360" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E247396" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125789" e_stop="125684"/>
          <exon e_start="125438" e_stop="125079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTAC</genome_strand>
        <mrna_strand>ACCTTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAAGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324862" ref_strand="+" ref_description="SGN-E324862 [cTOC-11-D17]">
      <seq>cactaaaattcatcttcctccctgcatcttacttctggttctgttctcactaccatctttcaatgttgttgtaggtggagatggtgaatctggtaacccatttacacccaaaggttatctgattaggtactggaagaaacaaatctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactcaccacacagctccataccttttgctcttcagcaaatctcatgtgtgcaccagatctgtcaccaagtcttgaaaaacacagtggagatatccattttgccacttacagtgacaaaaactttaccaattatggaaccaatgaacctggaattggagttaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="126047" stop="124792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125747" g_stop="125684" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125438" g_stop="125092" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="411" r_length="347" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E324862" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125747" e_stop="125684"/>
          <exon e_start="125438" e_stop="125092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAATGTAAGTAACAATCTTCAACTCATCTATTTCAACTTCTTGTACAAAGATTGTACCTTTATATGTACCCATTAAGTATTCTTGATTTTTGTCATAATAATTGTAGCTTTTATGTACCTTACTAAGTGTCAAATAAAGTAACTTTGATTTTATCTAAAGATTGTACTCATGGGGTTAGGTGTCATATGAAGTAAATCTTGATTTTGTTACAAAGATTGTAACTTTATGCAGTTTTGGTGTCAATGCAGGTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACAC</genome_strand>
        <mrna_strand>CACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTGGTTCTGTTCTCACTACCATCTTTCAAT.....................................................................................................................................................................................................................................................GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701749" ref_strand="+" ref_description="SGN-E701749 [FA16DD04]">
      <seq>cccatctctctctatttccacaaaagaaatgcataacaaaattcttgtttcttcctacatcttacttgttcttttgttctcactatcatctttcaatattgttgtggctaaagatggagatgaatctgggaacccgtttacgccaaaaggttatgtgattagatactggaataaacatgtgtcgaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactctctacacacctccaatccttttgctcttcagcaaatctcatgtgcgcgcctgatctgttaccaagtctcgaaaaacacactggagatatccattttactacttacggcaacaaaaacttcaccaattatggtaccaacgaacctggaatcggagttaacaccttcaaaaactattctgaagatgcatctgtaaattctttcagacgttacggtagaggttctccccgtgataataaatttgataattacgcccctgatggcaatgtaattgaccaaagtttcaattcctatagcacaaatactccagggggttctggccaattcactaattacgccccgaataccaatgtccctgatctacgtttcactgcctattccgatcaaggaacaggcggggaacaagaatttaaaacttatttagaacaggggaattctggtggccagtctttcaaaagctatggcaaaaatggaaatggtgctgatagtaaattcaccagctatgggaacgaaactaatgttgcagcctcaacatttaaaaactatgggtcaaatgcaaatggggagaatcaaaattttacatcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="140862" stop="142783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141162" g_stop="141259" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141260" i_stop="141709" i_length="450">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141710" g_stop="142483" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="871" r_length="774" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E701749" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141162" e_stop="141259"/>
          <exon e_start="141710" e_stop="142483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATCTCTCTCTATTTCACACAAAAGAAATGCATAACAAAATTCTTGTTTCTTCCTACATCTTACTTGTTCTTTTGTTCTCACTATCATCTTTCAATGTAAGTAACAATCTTTTAACTTTTATGCTCAACATTTATGTTTCTTCAAGTAATCTTGATTGTCATAAATATTCTGAAAAACTTTATATACATACTCATGGGGTGTCAAATGATGGCTCATGGGGTGTCAAATGAAGTAATTCTTATATGTTATATACTTCTTTTCATGTATTTGTTTACCATACTAACAATAAAATTTTCACTACATTCACTACATATTATCCAAGTTGATTGAGATTATATACCAATCAATATTAAAATATGCACTTTATTTATAATTTCTGAATATAAAGTTCTTTATAGACAAGTGAAAATACACGGAGTAGATTGTTACAATGAAGTAATCCTGATTAGAATGTAAAAATTTATATTTGAGTTTTACTCATTTGATTTCGAATGTAAAAATTTATATAGTTAACCAACTAAGGCTATTAGAATTTCTCTTCGTAGATTGTTGTGGCTAAAGATGGAGATGAATCTGGGAACCCGTTTACGCCAAAAGGTTATGTGATTAGATACTGGAATAAACATGTGTCGAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCTCTACACACCTCCAATCCTTTTGCTCTTCAGCAAATCTCATGTGCGCGCCTGATCTGTTACCAAGTCTCGAAAAACACACTGGAGATATCCATTTTACTACTTACGGCAACAAAAACTTCACCAATTATGGTACCAACGAACCTGGAATCGGAGTTAACACCTTCAAAAACTATTCTGAAGATGCATCTGTAAATTCTTTCAGACGTTACGGTAGAGGTTCTCCCCGTGATAATAAATTTGATAATTACGCCCCTGATGGCAATGTAATTGACCAAAGTTTCAATTCCTATAGCACAAATACTCCAGGGGGTTCTGGCCAATTCACTAATTACGCCCCGAATACCAATGTCCCTGATCTACGTTTCACTGCCTATTCCGATCAAGGAACAGGCGGGGAACAAGAATTTAAAACTTATTTAGAACAGGGGAATTCTGGTGGCCAGTCTTTCAAAAGCTATGGCAAAAATGGAAATGGTGCTGATAGTAAATTCACCAGCTATGGGAACGAAACTAATGTTGCAGCCTCAACATTTAAAAACTATGGTCAAAATGCAAATGGGGAGAATCAAAATTTTACATCTTAT</genome_strand>
        <mrna_strand>CCCATCTCTCTCTATTTC-CACAAAAGAAATGCATAACAAAATTCTTGTTTCTTCCTACATCTTACTTGTTCTTTTGTTCTCACTATCATCTTTCAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGTGGCTAAAGATGGAGATGAATCTGGGAACCCGTTTACGCCAAAAGGTTATGTGATTAGATACTGGAATAAACATGTGTCGAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCTCTACACACCTCCAATCCTTTTGCTCTTCAGCAAATCTCATGTGCGCGCCTGATCTGTTACCAAGTCTCGAAAAACACACTGGAGATATCCATTTTACTACTTACGGCAACAAAAACTTCACCAATTATGGTACCAACGAACCTGGAATCGGAGTTAACACCTTCAAAAACTATTCTGAAGATGCATCTGTAAATTCTTTCAGACGTTACGGTAGAGGTTCTCCCCGTGATAATAAATTTGATAATTACGCCCCTGATGGCAATGTAATTGACCAAAGTTTCAATTCCTATAGCACAAATACTCCAGGGGGTTCTGGCCAATTCACTAATTACGCCCCGAATACCAATGTCCCTGATCTACGTTTCACTGCCTATTCCGATCAAGGAACAGGCGGGGAACAAGAATTTAAAACTTATTTAGAACAGGGGAATTCTGGTGGCCAGTCTTTCAAAAGCTATGGCAAAAATGGAAATGGTGCTGATAGTAAATTCACCAGCTATGGGAACGAAACTAATGTTGCAGCCTCAACATTTAAAAACTATGGGTCAAATGCAAATGGGGAGAATCAAAATTTTACATCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538401" ref_strand="-" ref_description="SGN-E538401 [TUS-57-J8](-)">
      <seq>aaattcttgtttcttccacatcttacttgttcttttgttctcactatcatctttcaatattgttgtggctaaagatggagatgaatctgggaacccgtttacgccaaaaggttatgtgattagatactggaataaacatgtgtcgaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactctctacacacctccaatccttttgctcttcagcaaatctcatgtgcgcgcctgatctgttaccaagtctcgaaaaacacactggagatatccattttactacttacggcaacaaaaacttcaccaattatggtaccaacgaacctggaatcggagttaacaccttcaaaaactattctgaagatgcatctgtaaattctttcagacgttacggtagaggttctccccgtgataataaatttgataattacgcccctgatggcaatgtaattgaccaaagtttcaattcctatagcacaaatactccagggggttctggccaattcactaattacgccccgaataccaatgtccctgatctacgtttcactgcctattccgatcaaggaacaggcggggaacaagaatttaaaacttatttagaacaggggaattctggtggccagtctttcaaaagctatggcaaaaatggaaatggtgctgatagtaaattcaccagctatgggaacgaaactaatgttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="140901" stop="142720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141201" g_stop="141259" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141260" i_stop="141709" i_length="450">
            <donor d_prob="0.931" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141710" g_stop="142420" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="769" r_length="711" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E538401" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538401" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="141201" e_stop="141259"/>
          <exon e_start="141710" e_stop="142420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTTGTTTCTTCCTACATCTTACTTGTTCTTTTGTTCTCACTATCATCTTTCAATGTAAGTAACAATCTTTTAACTTTTATGCTCAACATTTATGTTTCTTCAAGTAATCTTGATTGTCATAAATATTCTGAAAAACTTTATATACATACTCATGGGGTGTCAAATGATGGCTCATGGGGTGTCAAATGAAGTAATTCTTATATGTTATATACTTCTTTTCATGTATTTGTTTACCATACTAACAATAAAATTTTCACTACATTCACTACATATTATCCAAGTTGATTGAGATTATATACCAATCAATATTAAAATATGCACTTTATTTATAATTTCTGAATATAAAGTTCTTTATAGACAAGTGAAAATACACGGAGTAGATTGTTACAATGAAGTAATCCTGATTAGAATGTAAAAATTTATATTTGAGTTTTACTCATTTGATTTCGAATGTAAAAATTTATATAGTTAACCAACTAAGGCTATTAGAATTTCTCTTCGTAGATTGTTGTGGCTAAAGATGGAGATGAATCTGGGAACCCGTTTACGCCAAAAGGTTATGTGATTAGATACTGGAATAAACATGTGTCGAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCTCTACACACCTCCAATCCTTTTGCTCTTCAGCAAATCTCATGTGCGCGCCTGATCTGTTACCAAGTCTCGAAAAACACACTGGAGATATCCATTTTACTACTTACGGCAACAAAAACTTCACCAATTATGGTACCAACGAACCTGGAATCGGAGTTAACACCTTCAAAAACTATTCTGAAGATGCATCTGTAAATTCTTTCAGACGTTACGGTAGAGGTTCTCCCCGTGATAATAAATTTGATAATTACGCCCCTGATGGCAATGTAATTGACCAAAGTTTCAATTCCTATAGCACAAATACTCCAGGGGGTTCTGGCCAATTCACTAATTACGCCCCGAATACCAATGTCCCTGATCTACGTTTCACTGCCTATTCCGATCAAGGAACAGGCGGGGAACAAGAATTTAAAACTTATTTAGAACAGGGGAATTCTGGTGGCCAGTCTTTCAAAAGCTATGGCAAAAATGGAAATGGTGCTGATAGTAAATTCACCAGCTATGGGAACGAAACTAATGTTGCA</genome_strand>
        <mrna_strand>AAATTCTTGTTTCTTCC-ACATCTTACTTGTTCTTTTGTTCTCACTATCATCTTTCAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGTGGCTAAAGATGGAGATGAATCTGGGAACCCGTTTACGCCAAAAGGTTATGTGATTAGATACTGGAATAAACATGTGTCGAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCTCTACACACCTCCAATCCTTTTGCTCTTCAGCAAATCTCATGTGCGCGCCTGATCTGTTACCAAGTCTCGAAAAACACACTGGAGATATCCATTTTACTACTTACGGCAACAAAAACTTCACCAATTATGGTACCAACGAACCTGGAATCGGAGTTAACACCTTCAAAAACTATTCTGAAGATGCATCTGTAAATTCTTTCAGACGTTACGGTAGAGGTTCTCCCCGTGATAATAAATTTGATAATTACGCCCCTGATGGCAATGTAATTGACCAAAGTTTCAATTCCTATAGCACAAATACTCCAGGGGGTTCTGGCCAATTCACTAATTACGCCCCGAATACCAATGTCCCTGATCTACGTTTCACTGCCTATTCCGATCAAGGAACAGGCGGGGAACAAGAATTTAAAACTTATTTAGAACAGGGGAATTCTGGTGGCCAGTCTTTCAAAAGCTATGGCAAAAATGGAAATGGTGCTGATAGTAAATTCACCAGCTATGGGAACGAAACTAATGTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272462" ref_strand="+" ref_description="SGN-E272462 [cLEM-19-N23]">
      <seq>cttttgttctcactatcatctttcaatattgttgtggctaaagatggagatgaatctgggaacccgtttacgccaaaaggttatgtgattagatactggaataaacatgtgtcgaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcactctctacacacctccaatccttttgctcttcagcaaatctcatgtgcgcgcctgatctgttaccaagtctcgaaaaacacactggagatatccattttactacttacggcaacaaaaacttcaccaattatggtaccaacgaacctggaatcggagttaacaccttcaaaaactattctgaagatgcatctgtaaattctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="140933" stop="142399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141233" g_stop="141259" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141260" i_stop="141709" i_length="450">
            <donor d_prob="0.931" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141710" g_stop="142099" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="417" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E272462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141233" e_stop="141259"/>
          <exon e_start="141710" e_stop="142099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGTTCTCACTATCATCTTTCAATGTAAGTAACAATCTTTTAACTTTTATGCTCAACATTTATGTTTCTTCAAGTAATCTTGATTGTCATAAATATTCTGAAAAACTTTATATACATACTCATGGGGTGTCAAATGATGGCTCATGGGGTGTCAAATGAAGTAATTCTTATATGTTATATACTTCTTTTCATGTATTTGTTTACCATACTAACAATAAAATTTTCACTACATTCACTACATATTATCCAAGTTGATTGAGATTATATACCAATCAATATTAAAATATGCACTTTATTTATAATTTCTGAATATAAAGTTCTTTATAGACAAGTGAAAATACACGGAGTAGATTGTTACAATGAAGTAATCCTGATTAGAATGTAAAAATTTATATTTGAGTTTTACTCATTTGATTTCGAATGTAAAAATTTATATAGTTAACCAACTAAGGCTATTAGAATTTCTCTTCGTAGATTGTTGTGGCTAAAGATGGAGATGAATCTGGGAACCCGTTTACGCCAAAAGGTTATGTGATTAGATACTGGAATAAACATGTGTCGAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCTCTACACACCTCCAATCCTTTTGCTCTTCAGCAAATCTCATGTGCGCGCCTGATCTGTTACCAAGTCTCGAAAAACACACTGGAGATATCCATTTTACTACTTACGGCAACAAAAACTTCACCAATTATGGTACCAACGAACCTGGAATCGGAGTTAACACCTTCAAAAACTATTCTGAAGATGCATCTGTAAATTCTTTC</genome_strand>
        <mrna_strand>CTTTTGTTCTCACTATCATCTTTCAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGTGGCTAAAGATGGAGATGAATCTGGGAACCCGTTTACGCCAAAAGGTTATGTGATTAGATACTGGAATAAACATGTGTCGAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCTCTACACACCTCCAATCCTTTTGCTCTTCAGCAAATCTCATGTGCGCGCCTGATCTGTTACCAAGTCTCGAAAAACACACTGGAGATATCCATTTTACTACTTACGGCAACAAAAACTTCACCAATTATGGTACCAACGAACCTGGAATCGGAGTTAACACCTTCAAAAACTATTCTGAAGATGCATCTGTAAATTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324531" ref_strand="+" ref_description="SGN-E324531 [cTOC-9-I8]">
      <seq>tcaaaatgcactctctacacacctccaatccttttgctcttcagcaaatctcatgtgcgcgcctgatctgttaccaagtctcgaaaaacacactggagatatccattttactacttacggcaacaaaaacttcaccaattatggtaccaacgaacctggaatcggagttaacaccttcaaaaactattctgaagatgcatctgtaaattctttcagacgttacggtagaggttctccccgtgataataaatttgataattacgcccctgatggcaatgtaattgaccaaagtttcaattcctatagcacaaatactccagggggttctggccaattcactaattacgccccgaataccaatgtccctgatctacgtttcactgcctattccgatcaaagaacaggcggggaacaagaatttaaaacttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="141586" stop="142616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141886" g_stop="142316" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E324531" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141886" e_stop="142316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAATGCACTCTCTACACACCTCCAATCCTTTTGCTCTTCAGCAAATCTCATGTGCGCGCCTGATCTGTTACCAAGTCTCGAAAAACACACTGGAGATATCCATTTTACTACTTACGGCAACAAAAACTTCACCAATTATGGTACCAACGAACCTGGAATCGGAGTTAACACCTTCAAAAACTATTCTGAAGATGCATCTGTAAATTCTTTCAGACGTTACGGTAGAGGTTCTCCCCGTGATAATAAATTTGATAATTACGCCCCTGATGGCAATGTAATTGACCAAAGTTTCAATTCCTATAGCACAAATACTCCAGGGGGTTCTGGCCAATTCACTAATTACGCCCCGAATACCAATGTCCCTGATCTACGTTTCACTGCCTATTCCGATCAAGGAACAGGCGGGGAACAAGAATTTAAAACTTATT</genome_strand>
        <mrna_strand>TCAAAATGCACTCTCTACACACCTCCAATCCTTTTGCTCTTCAGCAAATCTCATGTGCGCGCCTGATCTGTTACCAAGTCTCGAAAAACACACTGGAGATATCCATTTTACTACTTACGGCAACAAAAACTTCACCAATTATGGTACCAACGAACCTGGAATCGGAGTTAACACCTTCAAAAACTATTCTGAAGATGCATCTGTAAATTCTTTCAGACGTTACGGTAGAGGTTCTCCCCGTGATAATAAATTTGATAATTACGCCCCTGATGGCAATGTAATTGACCAAAGTTTCAATTCCTATAGCACAAATACTCCAGGGGGTTCTGGCCAATTCACTAATTACGCCCCGAATACCAATGTCCCTGATCTACGTTTCACTGCCTATTCCGATCAAAGAACAGGCGGGGAACAAGAATTTAAAACTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703258" ref_strand="+" ref_description="SGN-E703258 [FA21AA07]">
      <seq>cttcagcaaatctcatgtgcgcgcctgatctgttaccaagtctcgaaaaacacactggagatatccattttactacttacggcaacaaaaacttcaccaattatggtaccaacgaacctggaatcggagttaacaccttcaaaaactattctgaagatgcatctgtaaattctttcagacgttacggtagaggttctccccgtgataataaatttgataattacgcccctgatggcaatgtaattgaccaaagtttcaattcctatagcacaaatactccagggggttctggccaattcactaattacgccccgaataccaatgtccctgatctacgtttcactgcctattccgatcaaggaacaggcggggaacaagaatttaaaacttatttagaacaggggaattctggtggccagtctttcaaaagctatggcaaaaatggaaatggtgctgatagtaaattcaccagctatgggaacgaaactaatgttgcagcctcaacatttaaaaactatggtcaaaatgcaaatggggagaatcaaaattttacatcttatagtactaatggcaataatcctcaaaacaatttcaaaaactacggcgttggaggtaatggtccatctgagacttttactaactacagagatgaatcgaatgttggtgatgacaagtttagtaactatgttaaggatgcaaatgctggtgaagctaatttcaccaattatggtcaatcgttcaatgaaggtaccgatgtattcattacttacggaaaagggggtaatgacccacatatcaatttcaaaacttacggagttaataacacattccaagattatgtcaaagatacagctacatttttccaattaccaccaacaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="141624" stop="143103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141924" g_stop="142803" g_length="880"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="882" r_length="882" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E703258" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141924" e_stop="142803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAGCAAATCTCATGTGCGCGCCTGATCTGTTACCAAGTCTCGAAAAACACACTGGAGATATCCATTTTACTACTTACGGCAACAAAAACTTCACCAATTATGGTACCAACGAACCTGGAATCGGAGTTAACACCTTCAAAAACTATTCTGAAGATGCATCTGTAAATTCTTTCAGACGTTACGGTAGAGGTTCTCCCCGTGATAATAAATTTGATAATTACGCCCCTGATGGCAATGTAATTGACCAAAGTTTCAATTCCTATAGCACAAATACTCCAGGGGGTTCTGGCCAATTCACTAATTACGCCCCGAATACCAATGTCCCTGATCTACGTTTCACTGCCTATTCCGATCAAGGAACAGGCGGGGAACAAGAATTTAAAACTTATTTAGAACAGGGGAATTCTGGTGGCCAGTCTTTCAAAAGCTATGGCAAAAATGGAAATGGTGCTGATAGTAAATTCACCAGCTATGGGAACGAAACTAATGTTGCAGCCTCAACATTTAAAAACTATGGTCAAAATGCAAATGGGGAGAATCAAAATTTTACATCTTATAGTACTAATGGCAATAATCCTCAAAACAATTTCAAAAACTACGGCGTTGGAGGTAATGGTCCATCTGAGACTTTTACTAACTACAGAGATGAATCGAATGTTGGTGATGACAAGTTTAGTAACTATGTTAAGGATGCAAATGCTGGTGAAGCTAATTTCACCAATTATGGTCAATCGTTCAATGAAGGTACCGATGTATTCATTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAATAACACATTCAAAGATTATGTCAAAGATACAGCTACA-TTTTCCAATTACCA-CAACAAAAC</genome_strand>
        <mrna_strand>CTTCAGCAAATCTCATGTGCGCGCCTGATCTGTTACCAAGTCTCGAAAAACACACTGGAGATATCCATTTTACTACTTACGGCAACAAAAACTTCACCAATTATGGTACCAACGAACCTGGAATCGGAGTTAACACCTTCAAAAACTATTCTGAAGATGCATCTGTAAATTCTTTCAGACGTTACGGTAGAGGTTCTCCCCGTGATAATAAATTTGATAATTACGCCCCTGATGGCAATGTAATTGACCAAAGTTTCAATTCCTATAGCACAAATACTCCAGGGGGTTCTGGCCAATTCACTAATTACGCCCCGAATACCAATGTCCCTGATCTACGTTTCACTGCCTATTCCGATCAAGGAACAGGCGGGGAACAAGAATTTAAAACTTATTTAGAACAGGGGAATTCTGGTGGCCAGTCTTTCAAAAGCTATGGCAAAAATGGAAATGGTGCTGATAGTAAATTCACCAGCTATGGGAACGAAACTAATGTTGCAGCCTCAACATTTAAAAACTATGGTCAAAATGCAAATGGGGAGAATCAAAATTTTACATCTTATAGTACTAATGGCAATAATCCTCAAAACAATTTCAAAAACTACGGCGTTGGAGGTAATGGTCCATCTGAGACTTTTACTAACTACAGAGATGAATCGAATGTTGGTGATGACAAGTTTAGTAACTATGTTAAGGATGCAAATGCTGGTGAAGCTAATTTCACCAATTATGGTCAATCGTTCAATGAAGGTACCGATGTATTCATTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAATAACACATTCCAAGATTATGTCAAAGATACAGCTACATTTTTCCAATTACCACCAACAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E687800" ref_strand="+" ref_description="SGN-E687800 [T3_tus_81_B13]">
      <seq>gtgataataaatttgataattacgcccctgatggcaatgtaattgaccaaagtttcaattcctatagcacaaatactccagggggttctggccaattcactaattacgccccgaataccaatgtccctgatctacgtttcactgcctattccgatcaaggaacaggcggggaacaagaatttaaaacttatttagaacaggggaattctggtggccagtctttcaaaagctatggcaaaaatggaaatggtgctgatagtaaattcaccagctatgggaacgaaactaatgttgcagcctcaacatttaaaaactatggtcaaaatgcaaatggggagaatcaaaattttacatcttatagtactaatggcaataatcctcaaaacaatttcaaaaactacggcgttggaggtaatggtccatctgagacttttactaactacagagatgaatcgaatgttggtgatgacaagtttagtaactatgttaaggatgcaaatgctggtgaagctaatttcaccaattatggtcaatcgttcaatgaaggtaccgatgtattcattacttacggaaaagggggtaatgacccacatatcaatttcaaaacttacggagttaataacacattcaaagattatgtcaaagatacagctacattttccaattaccacaacaaaacttcgcaggatttagcttcgttgagtgaggttaacggtggcaaaaaggtgaataacaggtggattgagcccgggaagtttttccgtgagaagatgttgaagagtggtacaatcatgcctatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="141825" stop="143226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142125" g_stop="142926" g_length="802"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="802" r_length="802" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E687800" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142125" e_stop="142926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATAATAAATTTGATAATTACGCCCCTGATGGCAATGTAATTGACCAAAGTTTCAATTCCTATAGCACAAATACTCCAGGGGGTTCTGGCCAATTCACTAATTACGCCCCGAATACCAATGTCCCTGATCTACGTTTCACTGCCTATTCCGATCAAGGAACAGGCGGGGAACAAGAATTTAAAACTTATTTAGAACAGGGGAATTCTGGTGGCCAGTCTTTCAAAAGCTATGGCAAAAATGGAAATGGTGCTGATAGTAAATTCACCAGCTATGGGAACGAAACTAATGTTGCAGCCTCAACATTTAAAAACTATGGTCAAAATGCAAATGGGGAGAATCAAAATTTTACATCTTATAGTACTAATGGCAATAATCCTCAAAACAATTTCAAAAACTACGGCGTTGGAGGTAATGGTCCATCTGAGACTTTTACTAACTACAGAGATGAATCGAATGTTGGTGATGACAAGTTTAGTAACTATGTTAAGGATGCAAATGCTGGTGAAGCTAATTTCACCAATTATGGTCAATCGTTCAATGAAGGTACCGATGTATTCATTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAATAACACATTCAAAGATTATGTCAAAGATACAGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGTGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCC</genome_strand>
        <mrna_strand>GTGATAATAAATTTGATAATTACGCCCCTGATGGCAATGTAATTGACCAAAGTTTCAATTCCTATAGCACAAATACTCCAGGGGGTTCTGGCCAATTCACTAATTACGCCCCGAATACCAATGTCCCTGATCTACGTTTCACTGCCTATTCCGATCAAGGAACAGGCGGGGAACAAGAATTTAAAACTTATTTAGAACAGGGGAATTCTGGTGGCCAGTCTTTCAAAAGCTATGGCAAAAATGGAAATGGTGCTGATAGTAAATTCACCAGCTATGGGAACGAAACTAATGTTGCAGCCTCAACATTTAAAAACTATGGTCAAAATGCAAATGGGGAGAATCAAAATTTTACATCTTATAGTACTAATGGCAATAATCCTCAAAACAATTTCAAAAACTACGGCGTTGGAGGTAATGGTCCATCTGAGACTTTTACTAACTACAGAGATGAATCGAATGTTGGTGATGACAAGTTTAGTAACTATGTTAAGGATGCAAATGCTGGTGAAGCTAATTTCACCAATTATGGTCAATCGTTCAATGAAGGTACCGATGTATTCATTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAATAACACATTCAAAGATTATGTCAAAGATACAGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGTGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326589" ref_strand="+" ref_description="SGN-E326589 [cTOC-17-L24]">
      <seq>tgataataaatttgataattacgcccctgatggcaatgtaattgaccaaagtttcaattcctatagcacaaatactccagggggttctggccaattcactaattacgccccgaataccaatgtccctgatctacgtttcactgcctattccgatcaaggaacaggcggggaacaagaatttaaaacttatttagaacaggggaattctggtggccagtctttcaaaagctatggcaaaaatggaaatggtgctgatagtaaattcaccagctatgggaacgaaactaatgttgcagcctcaacatttaaaaactatggtcaaaatgcaaatggggagaatcaaaattttacatcttatagtactaatggcaataatcctcaaaacaatttcaaaaactacggcgttggaggtaatggtccatctgagacttttactaactacagagatgaatcgaatgttggtgatgacaagtttagtaactatgttaaggatgcaaatgctggtgaagctaatttcaccaattatggtcaatcgttcaatgaaggtaccgatgtattcattacttacgggaaaagggggtaatgacccacatatcaatttcaaaacttacggagttaataacacattcaaagattatgtcaagatacagctacattttccattaccacacaaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="141826" stop="143105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142126" g_stop="142805" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E326589" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142126" e_stop="142805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAATAAATTTGATAATTACGCCCCTGATGGCAATGTAATTGACCAAAGTTTCAATTCCTATAGCACAAATACTCCAGGGGGTTCTGGCCAATTCACTAATTACGCCCCGAATACCAATGTCCCTGATCTACGTTTCACTGCCTATTCCGATCAAGGAACAGGCGGGGAACAAGAATTTAAAACTTATTTAGAACAGGGGAATTCTGGTGGCCAGTCTTTCAAAAGCTATGGCAAAAATGGAAATGGTGCTGATAGTAAATTCACCAGCTATGGGAACGAAACTAATGTTGCAGCCTCAACATTTAAAAACTATGGTCAAAATGCAAATGGGGAGAATCAAAATTTTACATCTTATAGTACTAATGGCAATAATCCTCAAAACAATTTCAAAAACTACGGCGTTGGAGGTAATGGTCCATCTGAGACTTTTACTAACTACAGAGATGAATCGAATGTTGGTGATGACAAGTTTAGTAACTATGTTAAGGATGCAAATGCTGGTGAAGCTAATTTCACCAATTATGGTCAATCGTTCAATGAAGGTACCGATGTATTCATTACTTAC-GGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAATAACACATTCAAAGATTATGTCAAAGATACAGCTACATTTTCCAATTACCACAACAAAACTT</genome_strand>
        <mrna_strand>TGATAATAAATTTGATAATTACGCCCCTGATGGCAATGTAATTGACCAAAGTTTCAATTCCTATAGCACAAATACTCCAGGGGGTTCTGGCCAATTCACTAATTACGCCCCGAATACCAATGTCCCTGATCTACGTTTCACTGCCTATTCCGATCAAGGAACAGGCGGGGAACAAGAATTTAAAACTTATTTAGAACAGGGGAATTCTGGTGGCCAGTCTTTCAAAAGCTATGGCAAAAATGGAAATGGTGCTGATAGTAAATTCACCAGCTATGGGAACGAAACTAATGTTGCAGCCTCAACATTTAAAAACTATGGTCAAAATGCAAATGGGGAGAATCAAAATTTTACATCTTATAGTACTAATGGCAATAATCCTCAAAACAATTTCAAAAACTACGGCGTTGGAGGTAATGGTCCATCTGAGACTTTTACTAACTACAGAGATGAATCGAATGTTGGTGATGACAAGTTTAGTAACTATGTTAAGGATGCAAATGCTGGTGAAGCTAATTTCACCAATTATGGTCAATCGTTCAATGAAGGTACCGATGTATTCATTACTTACGGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAATAACACATTCAAAGATTATGTC-AAGATACAGCTACATTTTCC-ATTACCAC-ACAAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326691" ref_strand="+" ref_description="SGN-E326691 [cTOC-17-L23]">
      <seq>tgataataaatttgataattacgcccctgatggcaatgtaattgaccaaagtttcaattcctatagcacaaatactccagggggttctggccaattcactaattacgccccgaataccaatgtccctgatctacgtttcactgcctattccgatcaaggaacaggcggggaacaagaatttaaaacttatttagaacaggggaattctggtggccagtctttcaaaagctatggcaaaaatggaaatggtgctgatagtaaattcaccagctatgggaacgaaactaatgttgcagcctcaacatttaaaaactatggtcaaaatgcaaatggggagaatcaaaattttacatcttatagtactaatggcaataatcctcaaaacaatttcaaaaactacggcgttggaggtaatggtccatctgagacttttactaactacagagatgaatcgaatgttggtgatgacaagtttagtaactatgttaaggatgcaaatgctggtgaagctaatttcaccaattatggtcaatcgttcaatgaaggtaccgatgtattcattacnttacggaaagggggtaatgacccacatatcaatttcaaaacttacggagttaataacacattcaaagattatgtcaaagatacagctacattttccaattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="141826" stop="143092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142126" g_stop="142792" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E326691" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142126" e_stop="142792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAATAAATTTGATAATTACGCCCCTGATGGCAATGTAATTGACCAAAGTTTCAATTCCTATAGCACAAATACTCCAGGGGGTTCTGGCCAATTCACTAATTACGCCCCGAATACCAATGTCCCTGATCTACGTTTCACTGCCTATTCCGATCAAGGAACAGGCGGGGAACAAGAATTTAAAACTTATTTAGAACAGGGGAATTCTGGTGGCCAGTCTTTCAAAAGCTATGGCAAAAATGGAAATGGTGCTGATAGTAAATTCACCAGCTATGGGAACGAAACTAATGTTGCAGCCTCAACATTTAAAAACTATGGTCAAAATGCAAATGGGGAGAATCAAAATTTTACATCTTATAGTACTAATGGCAATAATCCTCAAAACAATTTCAAAAACTACGGCGTTGGAGGTAATGGTCCATCTGAGACTTTTACTAACTACAGAGATGAATCGAATGTTGGTGATGACAAGTTTAGTAACTATGTTAAGGATGCAAATGCTGGTGAAGCTAATTTCACCAATTATGGTCAATCGTTCAATGAAGGTACCGATGTATTCATTAC-TTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAATAACACATTCAAAGATTATGTCAAAGATACAGCTACATTTTCCAATTAC</genome_strand>
        <mrna_strand>TGATAATAAATTTGATAATTACGCCCCTGATGGCAATGTAATTGACCAAAGTTTCAATTCCTATAGCACAAATACTCCAGGGGGTTCTGGCCAATTCACTAATTACGCCCCGAATACCAATGTCCCTGATCTACGTTTCACTGCCTATTCCGATCAAGGAACAGGCGGGGAACAAGAATTTAAAACTTATTTAGAACAGGGGAATTCTGGTGGCCAGTCTTTCAAAAGCTATGGCAAAAATGGAAATGGTGCTGATAGTAAATTCACCAGCTATGGGAACGAAACTAATGTTGCAGCCTCAACATTTAAAAACTATGGTCAAAATGCAAATGGGGAGAATCAAAATTTTACATCTTATAGTACTAATGGCAATAATCCTCAAAACAATTTCAAAAACTACGGCGTTGGAGGTAATGGTCCATCTGAGACTTTTACTAACTACAGAGATGAATCGAATGTTGGTGATGACAAGTTTAGTAACTATGTTAAGGATGCAAATGCTGGTGAAGCTAATTTCACCAATTATGGTCAATCGTTCAATGAAGGTACCGATGTATTCATTACNTTACGG-AAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAATAACACATTCAAAGATTATGTCAAAGATACAGCTACATTTTCCAATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538404" ref_strand="+" ref_description="SGN-E538404 [TUS-57-J8]">
      <seq>ttttttttttataataaatatgcatacagtttattatttctccttcatggacaaataaaagtgaacatagttacttaggggaggatattactttgtccaaatatagagagattacataacaaatgtaaatcgacagttttaatacattcggttaaaacccaaacaagaaaatgtaaatatttattaaaatcccgtttttccccaggcttaatctgcagttgcccaagtcatgtcattctcaaagatccagtgacaaacctctattttcccgggtcctgacccgagtgcaatgaaggctccgtgcctcggtccccatgaagaagtatccacgtggcaaatcgcaacaccatggttgatcttagcctttgaattcgggtccaaaatatccgcttcgtagactcggactttaggaaccgaatgacagtaatacaataaggaagggtacagcgtttgatgacatgatactgatttggtaacttttccaccattgattccttttattgatccaatcatgatgttcccctttgatccatttgtattctcagttgttcgaaccaccacattacgacccaacactgatgttgcgaaatcaatcatatcttcagctgaattaacacattgtttcgtctccccagggctcggtgctctttcacactcactcagcgcatcgccaatcatctttgccacctgtgaatcattggccgcatggaaaattttcttcagctcatcaatctttgacgtagaaaaaggcaatttcgcagcaatcgcccggggcaaaaaggaccttttaggcatcttatcctttatatctggcataggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="144033" stop="142615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143737" g_stop="142915" g_length="823"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="823" r_length="823" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E538404" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143737" e_stop="142915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTCATTATAATAAATATGCATACAGTTTATTATTTCTCCTTCATGGACAAATAAAAGTGAACATAGTTACTTAGGGGAGGATATTACTTTGTCCAAATATAGAGAGATTACATAACAAATGTAAATCGACAGTTTTAATACATTCGGTTAAAACCCAAACAAGAAAATGTAAATATTTATTAAAATCCCGTTTTTCCCCAGGCTTAATCTGCAGTTGCCCAAGTCATGTCATTCTCAAAGATCCAGTGACAAACCTCTATTTTCCCGGGTCCTGACCCGAGTGCAATGAAGGCTCCGTGCCTCGGTCCCCATGAAGAAGTATCCACGTGGCAAATCGCAACACCATGGTTGATCTTAGCCTTTGAATTCGGGTCCAAAATATCCGCTTCGTAGACTCGGACTTTAGGAACCGAATGACAGTAATACAATAAGGAAGGGTACAGCGTTTGATGACATGATACTGATTTGGTAACTTTTCCACCATTGATTCCTTTTATTGATCCAATCATGATGTTCCCCTTTGATCCATTTGTATTCTCAGTTGTTCGAACCACCACATTACGACCCAACACTGATGTTGCGAAATCAATCATATCTTCAGCTGAATTAACACATTGTTTCGTCTCCCCAGGGCTCGGTGCTCTTTCACACTCACTCAGCGCATCGCCAATCATCTTTGCCACCTGTGAATCATTGGCCGCATGGAAAATTTTCTTCAGCTCATCAATCTTTGACGTAGAAAAAGGCAATTTCGCAGCAATCGCCCGGGGCAAAAAGGACCTTTTAGGCATCTTATCCTTTATATCTGGCATAGGCATG</genome_strand>
        <mrna_strand>TTTTTTTTTTATAATAAATATGCATACAGTTTATTATTTCTCCTTCATGGACAAATAAAAGTGAACATAGTTACTTAGGGGAGGATATTACTTTGTCCAAATATAGAGAGATTACATAACAAATGTAAATCGACAGTTTTAATACATTCGGTTAAAACCCAAACAAGAAAATGTAAATATTTATTAAAATCCCGTTTTTCCCCAGGCTTAATCTGCAGTTGCCCAAGTCATGTCATTCTCAAAGATCCAGTGACAAACCTCTATTTTCCCGGGTCCTGACCCGAGTGCAATGAAGGCTCCGTGCCTCGGTCCCCATGAAGAAGTATCCACGTGGCAAATCGCAACACCATGGTTGATCTTAGCCTTTGAATTCGGGTCCAAAATATCCGCTTCGTAGACTCGGACTTTAGGAACCGAATGACAGTAATACAATAAGGAAGGGTACAGCGTTTGATGACATGATACTGATTTGGTAACTTTTCCACCATTGATTCCTTTTATTGATCCAATCATGATGTTCCCCTTTGATCCATTTGTATTCTCAGTTGTTCGAACCACCACATTACGACCCAACACTGATGTTGCGAAATCAATCATATCTTCAGCTGAATTAACACATTGTTTCGTCTCCCCAGGGCTCGGTGCTCTTTCACACTCACTCAGCGCATCGCCAATCATCTTTGCCACCTGTGAATCATTGGCCGCATGGAAAATTTTCTTCAGCTCATCAATCTTTGACGTAGAAAAAGGCAATTTCGCAGCAATCGCCCGGGGCAAAAAGGACCTTTTAGGCATCTTATCCTTTATATCTGGCATAGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269748" ref_strand="+" ref_description="SGN-E269748 [cLEM-17-D2]">
      <seq>ttttttttaataataaatatgcatacagtttattatttctccttcatggacaaataaaagtgaacatagttacttaggggaggatattactttgtccaaatatagagagattacataacaaatgtaaatcgacagttttaatacattcggttaaaacccaaacaagaaaatgtaaatatttattaaaatcccgtttttccccaggcttaatctgcagttgcccaagtcatgtcattctcaaagatccagtgacaaacctctattttcccgggtcctgacccgagtgcaatgaaggctccgtgcctcggtccccatgaagaagtatccacgtggcaaatcgcaacaccatggttgatcttagcctttgaattcgggtccaaaatatccgcttcgtagactcggactttaggaaccgaatgacagtaatacaataaggaagggtacagcgtttgatgacatgatactgatttggtaactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="-" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="144033" stop="142957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143736" g_stop="143257" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="-" ref_id="SGN-E269748" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143736" e_stop="143257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCATTATAATAAATATGCATACAGTTTATTATTTCTCCTTCATGGACAAATAAAAGTGAACATAGTTACTTAGGGGAGGATATTACTTTGTCCAAATATAGAGAGATTACATAACAAATGTAAATCGACAGTTTTAATACATTCGGTTAAAACCCAAACAAGAAAATGTAAATATTTATTAAAATCCCGTTTTTCCCCAGGCTTAATCTGCAGTTGCCCAAGTCATGTCATTCTCAAAGATCCAGTGACAAACCTCTATTTTCCCGGGTCCTGACCCGAGTGCAATGAAGGCTCCGTGCCTCGGTCCCCATGAAGAAGTATCCACGTGGCAAATCGCAACACCATGGTTGATCTTAGCCTTTGAATTCGGGTCCAAAATATCCGCTTCGTAGACTCGGACTTTAGGAACCGAATGACAGTAATACAATAAGGAAGGGTACAGCGTTTGATGACATGATACTGATTTGGTAACTTTT</genome_strand>
        <mrna_strand>TTTTTTTTAATAATAAATATGCATACAGTTTATTATTTCTCCTTCATGGACAAATAAAAGTGAACATAGTTACTTAGGGGAGGATATTACTTTGTCCAAATATAGAGAGATTACATAACAAATGTAAATCGACAGTTTTAATACATTCGGTTAAAACCCAAACAAGAAAATGTAAATATTTATTAAAATCCCGTTTTTCCCCAGGCTTAATCTGCAGTTGCCCAAGTCATGTCATTCTCAAAGATCCAGTGACAAACCTCTATTTTCCCGGGTCCTGACCCGAGTGCAATGAAGGCTCCGTGCCTCGGTCCCCATGAAGAAGTATCCACGTGGCAAATCGCAACACCATGGTTGATCTTAGCCTTTGAATTCGGGTCCAAAATATCCGCTTCGTAGACTCGGACTTTAGGAACCGAATGACAGTAATACAATAAGGAAGGGTACAGCGTTTGATGACATGATACTGATTTGGTAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230462" ref_strand="+" ref_description="SGN-E230462 [cLEL-35-F4](-)">
      <seq>tcattgcactcgggtcaggacccgggaaaatagaggtttgtcactggatctttgagaatgacatgacttgggcaactgcagattaagcctggggaaaaacgggattttaataaatatttacattttcttgtttgggttttaaccgaatgtattaaaactgtcgatttacatttgttatgtaatctctctatatttggacaaagtaatatcctcccctaagtaactatgttcacttttatttgtccatgaagaagaaataataaactgtatgcatatttattataatgaattcccaggtatttcgcatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="143145" stop="144061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143445" g_stop="143752" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="309" polyA_stop="324"/>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E230462" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143445" e_stop="143752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGCACTCGGGTCAGGACCCGGGAAAATAGAGGTTTGTCACTGGATCTTTGAGAATGACATGACTTGGGCAACTGCAGATTAAGCCTGGGGAAAAACGGGATTTTAATAAATATTTACATTTTCTTGTTTGGGTTTTAACCGAATGTATTAAAACTGTCGATTTACATTTGTTATGTAATCTCTCTATATTTGGACAAAGTAATATCCTCCCCTAAGTAACTATGTTCACTTTTATTTGTCCATGAAGGAGAAATAATAAACTGTATGCATATTTATTATAATGAATTCACAGGTATTTCGAATA</genome_strand>
        <mrna_strand>TCATTGCACTCGGGTCAGGACCCGGGAAAATAGAGGTTTGTCACTGGATCTTTGAGAATGACATGACTTGGGCAACTGCAGATTAAGCCTGGGGAAAAACGGGATTTTAATAAATATTTACATTTTCTTGTTTGGGTTTTAACCGAATGTATTAAAACTGTCGATTTACATTTGTTATGTAATCTCTCTATATTTGGACAAAGTAATATCCTCCCCTAAGTAACTATGTTCACTTTTATTTGTCCATGAAGAAGAAATAATAAACTGTATGCATATTTATTATAATGAATTCCCAGGTATTTCGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316077" ref_strand="+" ref_description="SGN-E316077 [cTOA-23-F1]">
      <seq>aaagaaatgcataccaaaattcttcttccttcctgcatcttacttcttcttttgttcacactatcatctttggatgttgttgtggctaaagatggagatgaatctgggaacccgtttacgccaaaaggttatctgattagatactggaataaacatgtctcaaatgacttaccaaagccatggtttcttctgaacaaggcatctccattgaatgctgcacaatatgcaacttacactaaacttgttgctgatcaaaatgcattcactacacacctccaatccttttgctcttcagcaaatctcatgtgtgcgcttgatttgttaccaagtcttgaaaaacacaaaggagatgtccattttgtctcttacggtgacaagaactttaccaattacggtaccaaagaatctggtctcggattcaactctttcaagaactatacagaggaagaaaatttccctgtgaattctttcaggcgctacggtagagattctcctcatgataaatcatttgacaactatggtgcccctggtgggcatacgcctgtccannagttcacagctatagcacaaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="145273" stop="147177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145573" g_stop="145647" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145648" i_stop="146376" i_length="729">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146377" g_stop="146877" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="575" r_length="500" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E316077" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145573" e_stop="145647"/>
          <exon e_start="146377" e_stop="146877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAATGCATACCAAAATTCTTCTTCCTTCCTGCATCTTACTTCTTCTTTTGTTCACACTATCATCTTTGGATGTAAGTAACAATCTTTAACTCTTATGCTCATAAATACTTTTTGTTAATTTTGTCTTAAATATTTTCGTTTTTCCTTACAGGAAAATAATTCTTTTTCTTGTTTATCCTTAACATTAACTAACTACTTATGAAAAAAACATTTGTAAATGCATTGAAACTAAGGACCAATTAATATAGGCATTTCAATGAAATACTCATTTTATTCATTATTTCTTAAATGGAGTGCAAAGTTTACCGCTAATAAAAGTAAAAGTGAATGAAGGAAAGTATGATTGTAACTTGATGAAACCCCATGGGGGTGTATCTATGGTAGTCACTACACTAAAATGATCTTTAGTGATAATAACTTACTTGTCGCTAAAAATGTAGTTTAAGTTGCGATTCAGACTCTTTGTAAATGTCCCTAAAGCCTATAGTGATATTGAATCAAATGAGAAATAACTAATGTTAGTAAAAACTTGAGTACTCTTTGTTAATGTGAAGAACTATTGCTGCTAAAAAAGTTGTTTTTATGGTAGTGAGTTCAAGAAAACACAAAATGAGACCAACATAGCTTCAAGAAACTGTCTCTTAAAATTTGACGGGACTTTTCACTTAAACACGTCAAGTAAATCTTATACATTTCAATCAAACGTACTAGACCTCTGTTGTGTCATTTTGATTTGACAGTGTTAACGTTAGAATATACTCAATCGAATATATGATGAAACTGGGGTGGTGTCAATGCAGGTTGTTGTGGCTAAAGATGGAGATGAATCTGGGAACCCGTTTACGCCAAAAGGTTATCTGATTAGATACTGGAATAAACATGTCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCATTCACTACACACCTCCAATCCTTTTGCTCTTCAGCAAATCTCATGTGTGCGCTTGATTTGTTACCAAGTCTTGAAAAACACAAAGGAGATGTCCATTTTGTCTCTTACGGTGACAAGAACTTTACCAATTACGGTACCAAAGAATCTGGTCTCGGATTCAACTCTTTCAAGAACTATACAGAGGAAGAAAATTTCCCTGTGAATTCTTTCAGGCGCTACGGTAGAGATTCTCCTCATGATAATCAATTTGACAACTATGGTGCCCCTGGTGGCAATACGCCTGTCCAAAGTTTCAACAGCTATAGCACAAATACT</genome_strand>
        <mrna_strand>AAAGAAATGCATACCAAAATTCTTCTTCCTTCCTGCATCTTACTTCTTCTTTTGTTCACACTATCATCTTTGGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGTGGCTAAAGATGGAGATGAATCTGGGAACCCGTTTACGCCAAAAGGTTATCTGATTAGATACTGGAATAAACATGTCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCATTCACTACACACCTCCAATCCTTTTGCTCTTCAGCAAATCTCATGTGTGCGCTTGATTTGTTACCAAGTCTTGAAAAACACAAAGGAGATGTCCATTTTGTCTCTTACGGTGACAAGAACTTTACCAATTACGGTACCAAAGAATCTGGTCTCGGATTCAACTCTTTCAAGAACTATACAGAGGAAGAAAATTTCCCTGTGAATTCTTTCAGGCGCTACGGTAGAGATTCTCCTCATGATAAATCATTTGACAACTATGGTGCCCCTGGTGGGCATACGCCTGTCCANNAGTTC-ACAGCTATAGCACAAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339851" ref_strand="+" ref_description="SGN-E339851 [cTOF-3-K9]">
      <seq>gtatttcaaaagttacggcaaaaatgggaatggtgctaatggtgaattcgtcagctatggaaatgacacaaatgttatcggctcaacatttacaaattatggtcagacagcaaatgggggagaccaaaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="146773" stop="147994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147018" g_stop="147694" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E339851" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147018" e_stop="147694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTCAAAAGCTATGGAAAAGATGGGAATGGGGCGGATAGTCAATTCACTACTTATGGAAACAATACTAATGTTGATGGCTCAGACTTTACAAATTATGGTGAGGCAGCAAATGGGGAGAACCAAAATTTCACATCTTATGGTTTCAACGGCAATAATCCGGCAAGCAGTTTCAACAACTACGGCGTTGGAGGTAATGGTCCATCTGAGGCTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACGTTCACAACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGA</genome_strand>
        <mrna_strand>GTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705330" ref_strand="+" ref_description="SGN-E705330 [FA26DC09]">
      <seq>agggcttatcggctcaacatttacaaattatggtcagacagcaaatgggggagaccaaaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatccaacggtggaaaagttactaaatcagtatcatgtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="146792" stop="148261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147104" g_stop="147961" g_length="858"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="876" r_length="858" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E705330" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147104" e_stop="147961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTACAAATTATGGTGAGGCAGCAAATGGGGAGAACCAAAATTTCACATCTTATGGTTTCAACGGCAATAATCCGGCAAGCAGTTTCAACAACTACGGCGTTGGAGGTAATGGTCCATCTGAGGCTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACGTTCACAACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAAT-CAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATC</genome_strand>
        <mrna_strand>A-TTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272693" ref_strand="+" ref_description="SGN-E272693 [cLEM-21-A12]">
      <seq>aaaattcacatcttatggtttcaacggcaatgttcctgaaaatcatttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaacgtactgatgtattcactacttacagcaaagggggtgatcacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttcatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="146844" stop="148001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147144" g_stop="147701" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E272693" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147144" e_stop="147701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCACATCTTATGGTTTCAACGGCAATAATCCGGCAAGCAGTTTCAACAACTACGGCGTTGGAGGTAATGGTCCATCTGAGGCTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACGTTCACAACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAAT</genome_strand>
        <mrna_strand>AAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAACGTACTGATGTATTCACTACTTACAGCAAAGGGGGTGATCACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTCATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319966" ref_strand="+" ref_description="SGN-E319966 [cTOB-31-M11]">
      <seq>tttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagaatggtacaatcatgcctatgccagatataaaggataagatgcctaaaagggcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="146889" stop="148022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147189" g_stop="147723" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E319966" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147189" e_stop="147723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACAACTACGGCGTTGGAGGTAATGGTCCATCTGAGGCTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACGTTCACAACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCA</genome_strand>
        <mrna_strand>TTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAATGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGGCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320812" ref_strand="+" ref_description="SGN-E320812 [cTOB-27-K8]">
      <seq>tttcaccaactatggtgctggaggtaatggtccatctgaaacttttaatagttacagagatcaatcgaatgttggagatgacacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagtnttagcatcgttgatggaggtcaacggtggtanaaaggtgaataaccggtgggttgagcccggaaagttttttccgggagaagaggttggagagtggtacaatcatgcctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="146889" stop="147900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147189" g_stop="147600" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E320812" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147189" e_stop="147600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACAACTACGGCGTTGGAGGTAATGGTCCATCTGAGGCTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACGTTCACAACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAG-TTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATG</genome_strand>
        <mrna_strand>TTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTNTTAGCATCGTTGATGGAGGTCAACGGTGGTANAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTTCCGGGAGAAGAGGTTGGAGAGTGGTACAATCATGCCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545100" ref_strand="+" ref_description="SGN-E545100 [TUS-67-M10]">
      <seq>tggaggtaatggtccatctgaggcttttaatagttacagagatcaatcgaatgttggagatgacacgttcacaacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggaaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcgcaggatttagcttcgttgagtgaggttaacggtggcaaaaaggtgaataacaggtggattgagcccgggaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggcgattgctgcgaaattacctttttctacttcaaagattgatgagctgaagaaaattttccatgcggccaatgattcacaggtggcaaagatgattggcgatgcgctgagtgagtgtgaaagagcaccgagccctgnggagacgaaacaatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgtaatgtggtggttcgaacaactgagaatacaaatggatcaaaggggaatatcatgattggatcaataaaaggaaatcatggtggaaaagttaccaaatcagtatcatgtcatcaaacgctgtacccttccttattgtattactgtcattcggttcctaaagtccgagtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="146907" stop="148319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147207" g_stop="148019" g_length="813"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="813" r_length="813" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E545100" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147207" e_stop="148019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGGTAATGGTCCATCTGAGGCTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACGTTCACAACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTA</genome_strand>
        <mrna_strand>TGGAGGTAATGGTCCATCTGAGGCTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACGTTCACAACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGNGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAAATCATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309740" ref_strand="+" ref_description="SGN-E309740 [cLEY-26-J5]">
      <seq>ggaggtaatggtccatctgaggcttttaatagttacagagatcaatcgaatgttggagatgacacgttcacaacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggaaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcgcaggatttagcttcgttgagtgaggttaacggtggcaaaaaggtgaataacaggtggattgagcccgggaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggcgattgctgcgaaattacctttttctacttcaaagattgatgagctgaagaaaattttccatgcggccaatgattcacaggtggcaaagatgattggcgatgcgctgagtgagtgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="146908" stop="148065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147208" g_stop="147765" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E309740" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147208" e_stop="147765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTAATGGTCCATCTGAGGCTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACGTTCACAACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAA</genome_strand>
        <mrna_strand>GGAGGTAATGGTCCATCTGAGGCTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACGTTCACAACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245027" ref_strand="+" ref_description="SGN-E245027 [cLEF-2-P20]">
      <seq>cacattcactacctatgttaaggatgcaaatggcggtgaagcgaatttcaccaactatggtcaatcattcaatgaaggtactgatgtattcactacttacggcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="146970" stop="148121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147270" g_stop="147821" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E245027" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147270" e_stop="147821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGTTCACAACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGAT</genome_strand>
        <mrna_strand>CACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269562" ref_strand="+" ref_description="SGN-E269562 [cLEM-2-C8]">
      <seq>atgtattcactacttacggcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="147053" stop="148214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147353" g_stop="147914" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E269562" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147353" e_stop="147914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTATTCACTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAAT</genome_strand>
        <mrna_strand>ATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697332" ref_strand="+" ref_description="SGN-E697332 [FA02AH10]">
      <seq>ccgtcaaagggggtaatgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggaccccgaaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggatacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="147069" stop="148394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147368" g_stop="148094" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E697332" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147368" e_stop="148094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGA-CCCG-AATTCAAAGGCTAAGATCAACCATGGTGTTGCGATTTGCCACGTGGATACTTC</genome_strand>
        <mrna_strand>CCGTCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCCGAAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708486" ref_strand="+" ref_description="SGN-E708486 [FA35DF03]">
      <seq>cgtttgacccacatatcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggatacatcttcatggggaccgagtcacggagcgtttgtcgcactcgggtcgggacccgggaaaatagaagtttgtcattggatctttgagaatgatatgacttgggcaattgctgattgagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="147084" stop="148511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147379" g_stop="148216" g_length="838"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="837" r_length="837" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E708486" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147379" e_stop="148216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGCTAAGATCAACCATGGTGTTGCGATTTGCCACGTGGATACTTCTTCATGGGGACCGAGGCACGGAGCCTTCGTTGCACTCGGGTCAGGACCCGGGAAAATAGAGGTTTGTCACTGGATCTTTGAGAATGACATGACTTGGGCAACTGCTGATTGAGACAATTGCT</genome_strand>
        <mrna_strand>CGT-TTGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737548" ref_strand="+" ref_description="SGN-E737548 [LC10BB09]">
      <seq>atcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcgcaggatttagcttcgttgagtgaggttaacggtggcaaaaaggtgaataacaggtggattgagcccgggaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggcgattgctgcgaaattacctttttctacttcaaagattgatgagctgaagaaaattttccatgcggccaatgattcacaggtggcaaagatgattggcgatgcgctgagtgagtgtgaaagagcaccgagccctggggagacgaaacaatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgtaatgtggtggttcgaacaactgagaatacaaatggatcaaaggggaatatcatgattggatcaataaaaggaatcaatggtggaaaagttaccaaatcagtatcatgtcatcaaacgctgtacccttccttattgtattactgtcattcggttcctaaagtccgagtctacgaagcggatattttggacccgaattcaaaggctaagatcaaccatggtgttgcgatttgccacgtggatacttcttcatggggaccgaggcacggagccttcgttgcactcgggtcaggacccgggaaaatagaggtttgtcactggatctttgagaatgacatgacttgggcaactgctgattgagacaattgctgatcttaacggcgtgttaaatatgcggaaaatataagtttgaatgggctatagtttaagtattgtcaattggttgtctccctgtacgtaagaagggagtactctctaggtttacttttatttattgcccttttgttaaaaagtaataaataaaacccattttttattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="147094" stop="148690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147394" g_stop="148396" g_length="1003"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1002" r_length="1002" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E737548" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>1003</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147394" e_stop="148396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGCTAAGATCAACCATGGTGTTGCGATTTGCCACGTGGATACTTCTTCATGGGGACCGAGGCACGGAGCCTTCGTTGCACTCGGGTCAGGACCCGGGAAAATAGAGGTTTGTCACTGGATCTTTGAGAATGACATGACTTGGGCAACTGCTGATTGAGACAATTGCTGATCTTAACGGTGTGTTACAATATGCGGAAAATATAAGTTTGAAT-GGCTATTAGTTTATGTATTGTCTATTGTTTGTCTCTCTGTACGTATGAAGGACGTACTCTCTATGTTTACTTTTATTTATTGCACTTTTGTTAAGAAGTAATAAATAAAACGCATATTTTATTATAATATTTATA</genome_strand>
        <mrna_strand>ATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGCTAAGATCAACCATGGTGTTGCGATTTGCCACGTGGATACTTCTTCATGGGGACCGAGGCACGGAGCCTTCGTTGCACTCGGGTCAGGACCCGGGAAAATAGAGGTTTGTCACTGGATCTTTGAGAATGACATGACTTGGGCAACTGCTGATTGAGACAATTGCTGATCTTAACGGCGTGTTA-AATATGCGGAAAATATAAGTTTGAATGGGCTA-TAGTTTAAGTATTGTCAATTGGTTGTCTCCCTGTACGTAAGAAGGGAGTACTCTCTAGGTTTACTTTTATTTATTGCCCTTTTGTTAAAAAGTAATAAATAAAACCCATTTTTTATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740628" ref_strand="+" ref_description="SGN-E740628 [LC22BB02]">
      <seq>atcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcgcaggatttagcttcgttgagtgaggttaacggtggcaaaaaggtgaataacaggtggattgagcccgggaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggcgattgctgcgaaattacctttttctacttcaaagattgatgagctgaagaaaattttccatgcggccaatgattcacaggtggcaaagatgattggcgatgcgctgagtgagtgtgaaagagcaccgagccctggggagacgaaacaatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgtaatgtggtggttcgaacaactgagaatacaaatggatcaaaggggaatatcatgattggatcaataaaaggaatcaatggtggaaaagttaccaaatcagtatcatgtcatcaaacgctgtacccttccttattgtattactgtcattcggttcctaaagtccgagtctacgaagcggatattttggacccgaattcaaaggctaagatcaaccatggtgttgcgatttgccacgtggatacttcttcatggggaccgaggcacggagccttcgttgcactcgggtcaggacccgggaaaatagaggtttgtcactggatctttgagaatgacatgacttgngcaactgctgattgagacaattgctgatcttaacggcgtgttacaatatgcggaaaatataagtttgaatgggctatagtttatgtattgtcctatgtttgtctctctgtacgtatgaaagacgtactctctatgtttacttttattnnatgcacttttgttaagaagtataaataaaacgcatattttattaaaaaaaaaaaaaaaaaacctcgggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="147094" stop="148690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147394" g_stop="148384" g_length="991"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="990" r_length="990" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="991" polyA_stop="1009"/>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E740628" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>991</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147394" e_stop="148384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGCTAAGATCAACCATGGTGTTGCGATTTGCCACGTGGATACTTCTTCATGGGGACCGAGGCACGGAGCCTTCGTTGCACTCGGGTCAGGACCCGGGAAAATAGAGGTTTGTCACTGGATCTTTGAGAATGACATGACTTGGGCAACTGCTGATTGAGACAATTGCTGATCTTAACGGTGTGTTACAATATGCGGAAAATATAAGTTTGAAT-GGCTATTAGTTTATGTATTGTCTATTGTTTGTCTCTCTGTACGTATGAAGGACGTACTCTCTATGTTTACTTTTATTTATTGCACTTTTGTTAAGAAGTAATAAATAAAACGCATATTTTATT</genome_strand>
        <mrna_strand>ATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGCTAAGATCAACCATGGTGTTGCGATTTGCCACGTGGATACTTCTTCATGGGGACCGAGGCACGGAGCCTTCGTTGCACTCGGGTCAGGACCCGGGAAAATAGAGGTTTGTCACTGGATCTTTGAGAATGACATGACTTGNGCAACTGCTGATTGAGACAATTGCTGATCTTAACGGCGTGTTACAATATGCGGAAAATATAAGTTTGAATGGGCTA-TAGTTTATGTATTGTCCTATGTTTGTCTCTCTGTACGTATGAAAGACGTACTCTCTATGTTTACTTTTATTNNATGCACTTTTGTTAAGAAGT-ATAAATAAAACGCATATTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716037" ref_strand="+" ref_description="SGN-E716037 [FB15DG11]">
      <seq>atcaatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggatacatcttcatggggaccgagtcacggagcgtttgtcgcactcgggtcgggacccggaaaaatagaagtttgtcattggatctttgagaatgatatgacttgggcaattgctgattgagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="147094" stop="148511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147394" g_stop="148216" g_length="823"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="823" r_length="823" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E716037" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147394" e_stop="148216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGCTAAGATCAACCATGGTGTTGCGATTTGCCACGTGGATACTTCTTCATGGGGACCGAGGCACGGAGCCTTCGTTGCACTCGGGTCAGGACCCGGGAAAATAGAGGTTTGTCACTGGATCTTTGAGAATGACATGACTTGGGCAACTGCTGATTGAGACAATTGCT</genome_strand>
        <mrna_strand>ATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGAAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697502" ref_strand="+" ref_description="SGN-E697502 [FA03AG02]">
      <seq>cgctatttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggaatactcttcatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="147096" stop="148402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147394" g_stop="148102" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E697502" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147394" e_stop="148102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGCTAAGATCAACCATGGTGTTGCGATTTGCCACGTGGATACTTCTTCATGGG</genome_strand>
        <mrna_strand>CGCTATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGAATACTCTTCATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717006" ref_strand="+" ref_description="SGN-E717006 [FB18CF11]">
      <seq>atttcaaaacttacggagttaacaacactttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggatacatcttcatggggaccgagtcacggagcgtttgtcgcactcgggtcgggacccgggaaaatagaagtttgtcattggatctttgagaatgatatgacttgggcaattgctgattgagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="147098" stop="148511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147398" g_stop="148210" g_length="813"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="813" r_length="813" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E717006" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147398" e_stop="148210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGCTAAGATCAACCATGGTGTTGCGATTTGCCACGTGGATACTTCTTCATGGGGACCGAGGCACGGAGCCTTCGTTGCACTCGGGTCAGGACCCGGGAAAATAGAGGTTTGTCACTGGATCTTTGAGAATGACATGACTTGGGCAACTGCTGATTGAGACA</genome_strand>
        <mrna_strand>ATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269360" ref_strand="+" ref_description="SGN-E269360 [cLEM-18-O16]">
      <seq>actttcaaagattatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="147124" stop="148299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147424" g_stop="147999" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E269360" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147424" e_stop="147999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCG</genome_strand>
        <mrna_strand>ACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710280" ref_strand="+" ref_description="SGN-E710280 [FA54DG11]">
      <seq>gaccggatatgtcaaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctaagaagcggatattttggaccccgaattccaaggttaagatcaatcatggtgtcgcgatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="147133" stop="148380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147429" g_stop="148080" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E710280" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147429" e_stop="148080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGA-CCCGAATTCAAAGGCTAAGATCAACCATGGTGTTGCGATTTGC</genome_strand>
        <mrna_strand>GACCGGATATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTAAGAAGCGGATATTTTGGACCCCGAATTCCAAGGTTAAGATCAATCATGGTGTCGCGATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732216" ref_strand="+" ref_description="SGN-E732216 [LB01CD01]">
      <seq>cccattgatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggatacatcttcatggggaccgagtcacggagcgtttgtcgcactcgggtcgggacccgggaaaatagaagtttgtcattggatctttgagaatgatatgacttgggcaattgctgattgagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="147141" stop="148511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147439" g_stop="148210" g_length="772"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="772" r_length="772" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E732216" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147439" e_stop="148210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGCTAAGATCAACCATGGTGTTGCGATTTGCCACGTGGATACTTCTTCATGGGGACCGAGGCACGGAGCCTTCGTTGCACTCGGGTCAGGACCCGGGAAAATAGAGGTTTGTCACTGGATCTTTGAGAATGACATGACTTGGGCAACTGCTGATTGAGACA</genome_strand>
        <mrna_strand>CCCATTGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344052" ref_strand="+" ref_description="SGN-E344052 [cTOF-12-N7]">
      <seq>aaagatactgctacattttccaattaccacaacaaaacttcccaagttttagcatcgttgatggaggtcaacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatgggtgtcgcgatttgccacgtggatacatcttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="147142" stop="148399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147442" g_stop="148099" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E344052" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147442" e_stop="148099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGCTAAGATCAACCAT-GGTGTTGCGATTTGCCACGTGGATACTTCTTCAT</genome_strand>
        <mrna_strand>AAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGGTGTCGCGATTTGCCACGTGGATACATCTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714442" ref_strand="+" ref_description="SGN-E714442 [FB11BH02]">
      <seq>aacggtggtaaaaaggtgaataaccggtgggttgagcccggaaagtttttccgggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggatacatcttcatggggaccgagtcacggagcgtttgtcgcactcgggtcgggacccgggaaaatagaagtttgtcattggatctttgagaatgatatgacttgggcaattgctgattgagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="147211" stop="148511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147511" g_stop="148210" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E714442" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147511" e_stop="148210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGCTAAGATCAACCATGGTGTTGCGATTTGCCACGTGGATACTTCTTCATGGGGACCGAGGCACGGAGCCTTCGTTGCACTCGGGTCAGGACCCGGGAAAATAGAGGTTTGTCACTGGATCTTTGAGAATGACATGACTTGGGCAACTGCTGATTGAGACA</genome_strand>
        <mrna_strand>AACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697370" ref_strand="+" ref_description="SGN-E697370 [FA02CD02]">
      <seq>tgagcccggaaagtttttccgggacaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaacatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcacatgggaatatcatgattggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="147243" stop="148210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147543" g_stop="147910" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E697370" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147543" e_stop="147910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGAT</genome_strand>
        <mrna_strand>TGAGCCCGGAAAGTTTTTCCGGGACAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAACATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCACATGGGAATATCATGATTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545099" ref_strand="+" ref_description="SGN-E545099 [TUS-67-M10](-)">
      <seq>ttttcccggagaagatgttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcttttttgccccgggcgattgctgcgaaattacctttttctacttcaaagattgatgagctgaagaaaattttccatgcggccaatgatcaccaggtggcaaagatgattggcgatgcgctgagtgagtgtgaaagagcaccgagccctggggagacgaaacaatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgtaatgtggtggttcgaacaactgagaatacaaatggatcaaaggggaatatcatgattggatcaataaaaggaatcaatggtggaaaagttaccaaatcagtatcatgtcatcaaacgctgtacccttccttattgtattactgtcattcggttcctaaagtccgagtctacgaagcggatattttggacccgaattcaaaggctaagatcaaccatggtgttgcgatttgccacgtggatacttcttcatggggaccgaggcacggagccttcgttgcactcgggtcaggacccgggaaaatagaggtttgtcactggatctttgagaatgacatgacttgggcaactgctgattgagacaattgctgatcttaacggtgtgttacaatatgcggaaaatataagtttgaatggctattagtttatgtattgtctattgtttgtctctctgtacgtatgaaggacgtactctctatgtttacttttatttattgcacttttgttaagaagtaataaataaaacgcatattttattataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="147257" stop="148690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147557" g_stop="148396" g_length="840"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="840" r_length="840" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E545099" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147557" e_stop="148396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGCTAAGATCAACCATGGTGTTGCGATTTGCCACGTGGATACTTCTTCATGGGGACCGAGGCACGGAGCCTTCGTTGCACTCGGGTCAGGACCCGGGAAAATAGAGGTTTGTCACTGGATCTTTGAGAATGACATGACTTGGGCAACTGCTGATTGAGACAATTGCTGATCTTAACGGTGTGTTACAATATGCGGAAAATATAAGTTTGAATGGCTATTAGTTTATGTATTGTCTATTGTTTGTCTCTCTGTACGTATGAAGGACGTACTCTCTATGTTTACTTTTATTTATTGCACTTTTGTTAAGAAGTAATAAATAAAACGCATATTTTATTATAATATTTATA</genome_strand>
        <mrna_strand>TTTTCCCGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCTTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATCACCAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGCTAAGATCAACCATGGTGTTGCGATTTGCCACGTGGATACTTCTTCATGGGGACCGAGGCACGGAGCCTTCGTTGCACTCGGGTCAGGACCCGGGAAAATAGAGGTTTGTCACTGGATCTTTGAGAATGACATGACTTGGGCAACTGCTGATTGAGACAATTGCTGATCTTAACGGTGTGTTACAATATGCGGAAAATATAAGTTTGAATGGCTATTAGTTTATGTATTGTCTATTGTTTGTCTCTCTGTACGTATGAAGGACGTACTCTCTATGTTTACTTTTATTTATTGCACTTTTGTTAAGAAGTAATAAATAAAACGCATATTTTATTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228239" ref_strand="+" ref_description="SGN-E228239 [cLED-2-J17]">
      <seq>ttgaagagtggtacaatcatgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaggtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggatacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="147274" stop="148394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147574" g_stop="148094" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E228239" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147574" e_stop="148094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGCTAAGATCAACCATGGTGTTGCGATTTGCCACGTGGATACTTC</genome_strand>
        <mrna_strand>TTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247154" ref_strand="+" ref_description="SGN-E247154 [cLEF-46-D21]">
      <seq>atgcctatgccagatataaaggataagatgcctaaaaggtcctttttgccccgggtgattgcttccaaattaccattttctacttcaaaaattgctgagctgaagaaaatcttccacgccggtgatgagtctcaagtggagaagatgatcggcgatgcattgagtgagtgtgaaagagcaccgagcgccggtgagacgaaacgatgtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggatacatcttcatggggaccgagtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="147292" stop="148413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147592" g_stop="148113" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E247154" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147592" e_stop="148113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGCTAAGATCAACCATGGTGTTGCGATTTGCCACGTGGATACTTCTTCATGGGGACCGAGGCAC</genome_strand>
        <mrna_strand>ATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAAGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698040" ref_strand="+" ref_description="SGN-E698040 [FA05AC10]">
      <seq>gtgttaattcagctgaagatatgattgatttcgcaacatcagtgttgggtcgaaacgtcgtcgttcgaacgactgaggatacaaaaggatcaaatgggaatatcatgattggatcagtcaaaggaatcaacggtggaaaagttactaaatcagtatcatgtcatcaaacgctgtacccttacttactgtattactgtcattcggttcctaaagtccgggtctacgaagcggatattttggacccgaattcaaaggttaagatcaatcatggtgtcgcgatttgccacgtggatacatcttcatggggaccgagtcacggagcgtttgtcgcactcgggtcgggacccgggaaaatagaagtttgtcattggatctttgagaatgatatgacttgggcaattgctgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0261K11-lm4qy/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0261K11.1" temp_strand="+" temp_description="C05HBa0261K11.1  AC187538.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0261K11, sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="147497" stop="148505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147797" g_stop="148205" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0261K11.1" gen_strand="+" ref_id="SGN-E698040" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0261K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147797" e_stop="148205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGCTAAGATCAACCATGGTGTTGCGATTTGCCACGTGGATACTTCTTCATGGGGACCGAGGCACGGAGCCTTCGTTGCACTCGGGTCAGGACCCGGGAAAATAGAGGTTTGTCACTGGATCTTTGAGAATGACATGACTTGGGCAACTGCTGATTG</genome_strand>
        <mrna_strand>GTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>184</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1759" PGL_stop="173"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1759" e_stop="1472"/>
            <exon e_start="464" e_stop="388"/>
            <exon e_start="294" e_stop="173"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.100" e_score="0.993"/>
          <exon-intron don_prob="0.947" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="1759" e_stop="1472" e_length="288"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.100">
            <gDNA_intron_boundary i_start="1471" i_stop="465" i_length="1007"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="464" e_stop="388" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.947" acc_prob="0.983">
            <gDNA_intron_boundary i_start="387" i_stop="295" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="294" e_stop="173" e_length="122"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1759" stop="1472"/>
              <exon start="464" stop="388"/>
              <exon start="294" stop="205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1759" stop="1472"/>
              <exon start="464" stop="388"/>
              <exon start="294" stop="206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1758" stop="1472"/>
              <exon start="464" stop="388"/>
              <exon start="294" stop="204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1599" stop="1472"/>
              <exon start="464" stop="388"/>
              <exon start="294" stop="195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1593" stop="1472"/>
              <exon start="464" stop="388"/>
              <exon start="294" stop="173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267659" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGATTTGCGGTAACAATTGTAGGTATCCACCTGAGTTAAAGGGTTAATTCAAGACCCTGTTTTGTATTGTGGCCTATAAATAGACAAGGTTTAGTTATGGCAGATGAGTGTGCTGCTTTTATGAAGGGAACTGAATTGCCAGTGAAGAGGCCAAGAGAGGAAGAAGCAGAAACAGAGATGGAGGCAGCCAATAACAGCAACAATGGTTGTGAGAAAGAGGAGTCATCTCCTTATATCTCTTCTGTTTTACCTGGATGGTTCTCTGAGATTAGCCCCCTTTGGCCTG : GGGAAGCACACTCATTGAAGGTTGAGAAGATATTGTTTCAGGGGAAGTCTGATTACCAGAATGTCTTGGTTTTTCAG : TCATCAACTTATGGGAAGGTGCTTGTTTTGGATGGTGTGATCCAACTTACAGAGAGGGATGAATGTGCTTATCAAGAGATGATCACTCATCTTCCTCTTTGTTCAATTCCCAACCCTAAAAA</gDNA_template>
            <first_frame> S  D  L  R  *  Q  L  *  V  S  T  *  V  K  G  L  I  Q  D  P  V  L  Y  C  G  L  *  I  D  K  V  *  L  W  Q  M  S  V  L  L  L  *  R  E  L  N  C  Q  *  R  G  Q  E  R  K  K  Q  K  Q  R  W  R  Q  P  I  T  A  T  M  V  V  R  K  R  S  H  L  L  I  S  L  L  F  Y  L  D  G  S  L  R  L  A  P  F  G  L  :  G  K  H  T  H  *  R  L  R  R  Y  C  F  R  G  S  L  I  T  R  M  S  W  F  F  S :   H  Q  L  M  G  R  C  L  F  W  M  V  *  S  N  L  Q  R  G  M  N  V  L  I  K  R  *  S  L  I  F  L  F  V  Q  F  P  T  L  K  </first_frame>
            <second_frame>  Q  I  C  G  N  N  C  R  Y  P  P  E  L  K  G  *  F  K  T  L  F  C  I  V  A  Y  K  *  T  R  F  S  Y  G  R  *  V  C  C  F  Y  E  G  N  *  I  A  S  E  E  A  K  R  G  R  S  R  N  R  D  G  G  S  Q  *  Q  Q  Q  W  L  *  E  R  G  V  I  S  L  Y  L  F  C  F  T  W  M  V  L  *  D  *  P  P  L  A  W :   G  S  T  L  I  E  G  *  E  D  I  V  S  G  E  V  *  L  P  E  C  L  G  F  S   : V  I  N  L  W  E  G  A  C  F  G  W  C  D  P  T  Y  R  E  G  *  M  C  L  S  R  D  D  H  S  S  S  S  L  F  N  S  Q  P  *  K </second_frame>
            <third_frame>   R  F  A  V  T  I  V  G  I  H  L  S  *  R  V  N  S  R  P  C  F  V  L  W  P  I  N  R  Q  G  L  V  M  A  D  E  C  A  A  F  M  K  G  T  E  L  P  V  K  R  P  R  E  E  E  A  E  T  E  M  E  A  A  N  N  S  N  N  G  C  E  K  E  E  S  S  P  Y  I  S  S  V  L  P  G  W  F  S  E  I  S  P  L  W  P   : G  E  A  H  S  L  K  V  E  K  I  L  F  Q  G  K  S  D  Y  Q  N  V  L  V  F  Q  :  S  S  T  Y  G  K  V  L  V  L  D  G  V  I  Q  L  T  E  R  D  E  C  A  Y  Q  E  M  I  T  H  L  P  L  C  S  I  P  N  P  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1718" stop="1472"/>
                    <exon start="464" stop="388"/>
                    <exon start="294" stop="175"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVNSRPCFVLWPINRQGLVMADECAAFMKGTELPVKRPREEEAETEMEAANNSNNGCEKEESSPYISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVLVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="9687" PGL_stop="13280"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9687" e_stop="9780"/>
            <exon e_start="10579" e_stop="10716"/>
            <exon e_start="10826" e_stop="10968"/>
            <exon e_start="11062" e_stop="11215"/>
            <exon e_start="11326" e_stop="11555"/>
            <exon e_start="11871" e_stop="11960"/>
            <exon e_start="12680" e_stop="12853"/>
            <exon e_start="12945" e_stop="13082"/>
            <exon e_start="13236" e_stop="13280"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.839" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.652" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9687" e_stop="9780" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.988">
            <gDNA_intron_boundary i_start="9781" i_stop="10578" i_length="798"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10579" e_stop="10716" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="10717" i_stop="10825" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10826" e_stop="10968" e_length="143"/>
          </exon>
          <intron i_serial="3" don_prob="0.823" acc_prob="0.973">
            <gDNA_intron_boundary i_start="10969" i_stop="11061" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11062" e_stop="11215" e_length="154"/>
          </exon>
          <intron i_serial="4" don_prob="0.839" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11216" i_stop="11325" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11326" e_stop="11555" e_length="230"/>
          </exon>
          <intron i_serial="5" don_prob="0.939" acc_prob="0.993">
            <gDNA_intron_boundary i_start="11556" i_stop="11870" i_length="315"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11871" e_stop="11960" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="11961" i_stop="12679" i_length="719"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="12680" e_stop="12853" e_length="174"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.652">
            <gDNA_intron_boundary i_start="12854" i_stop="12944" i_length="91"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="12945" e_stop="13082" e_length="138"/>
          </exon>
          <intron i_serial="8" don_prob="0.985" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13083" i_stop="13235" i_length="153"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="13236" e_stop="13280" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9687" stop="9780"/>
              <exon start="10579" stop="10716"/>
              <exon start="10826" stop="10968"/>
              <exon start="11062" stop="11215"/>
              <exon start="11326" stop="11548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9696" stop="9780"/>
              <exon start="10579" stop="10716"/>
              <exon start="10826" stop="10968"/>
              <exon start="11062" stop="11215"/>
              <exon start="11326" stop="11395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9752" stop="9780"/>
              <exon start="10579" stop="10716"/>
              <exon start="10826" stop="10968"/>
              <exon start="11062" stop="11215"/>
              <exon start="11326" stop="11462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10587" stop="10716"/>
              <exon start="10826" stop="10968"/>
              <exon start="11062" stop="11163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11337" stop="11555"/>
              <exon start="11871" stop="11960"/>
              <exon start="12680" stop="12853"/>
              <exon start="12945" stop="13009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11337" stop="11555"/>
              <exon start="11871" stop="11960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12721" stop="12853"/>
              <exon start="12945" stop="13082"/>
              <exon start="13236" stop="13280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285592" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTCTCCTTGAAAACAGTGCTGTAATTTTCATCTCCAATAATGGCGGCTCGTGTATTTCTCTCTCGTTCTGTTCATCTGCTATCAAAGG : GAAAAAGATCCCATCTTGGCAAAATAGCTGCTTATAAATACAGCACAGCGGCTGCTTTCGAGGAGCCCGTCAAGCCTACTGTCAATGTGGATCATACTAAACTTCTTATCAACGGGCAATTTGTTGATTCTGCATCAG : GAAAAACTTTCCCGACTCTCGACCCCAGGACAGGGGAGGTAATTGCACATATTGCTGAAGGTGATGCAGAAGATATTAATCGGGCAGTTGCTGCTGCTCGTAAGGCTTTCGATGAAGGACCATGGCCTAGGATGACTGCTTAT : GAAAGGTCAAAGATATTGCTGCGCCTTGCTGATCTGATTGAAAAACATAACGATCAAATTGCAACGCTCGAGACTTGGGACACTGGGAAGCCTTATGCACAAGCTGCTAAGATTGAAGTACCAATGGTTGTACGTCTACTCCGTTATTATGCTG : GCTGGGCAGATAAAATTCATGGTATGACCATTCCTGCCGATGGACCATATCATGTTCAAACGTTGCATGAACCGATCGGGGTTGCTGGTCAGATTATCCCATGGAATTTTCCTCTTCTCATGTTTTCTTGGAAGATTGGCCCTGCTTTAGCTTGTGGTAACACAATTGTGCTAAAGACGGCTGAGCAGACCCCATTATCTGCATTGTATGTAGCAAGTCTATTTCAGGAG : GCTGGCCTGCCTGAAGGTGTTCTGAATATAATTTCTGGTTATGGTGCCACAGCTGGTGCTTCTCTGTGTAGTCATATGGATGTGGATAAG : CTTGCTTTTACTGGATCAACAGAAACCGGGAAAACCATACTTGAATTGGCTGCTAAGAGCAATCTTAAGCCTGTGACATTGGAACTTGGAGGGAAATCCCCTTTTATTGTTTGTGAGGATGCTGATATTGATACGGCCGTTGAACAAGCTCATTTTGCTCTCTTCTTTAATCAG : GGCCAATGTTGTTGTGCTGGTTCTCGGACCTATGTTCACGAGAAGGTCTATGATGAATTTCTGGAGAAGGCAAAGGCACGCGCCTTGAAACGAGTAGTTGGTGATCCGTTTAAATCAGGCACTGAGCAGGGTCCTCAG : ATTGATTCAAAACAGTTCGATAAGATCATGAAGTACATTAGATCT</gDNA_template>
            <first_frame> F  F  F  S  L  K  T  V  L  *  F  S  S  P  I  M  A  A  R  V  F  L  S  R  S  V  H  L  L  S  K   : G  K  R  S  H  L  G  K  I  A  A  Y  K  Y  S  T  A  A  A  F  E  E  P  V  K  P  T  V  N  V  D  H  T  K  L  L  I  N  G  Q  F  V  D  S  A  S   : G  K  T  F  P  T  L  D  P  R  T  G  E  V  I  A  H  I  A  E  G  D  A  E  D  I  N  R  A  V  A  A  A  R  K  A  F  D  E  G  P  W  P  R  M  T  A  Y  :  E  R  S  K  I  L  L  R  L  A  D  L  I  E  K  H  N  D  Q  I  A  T  L  E  T  W  D  T  G  K  P  Y  A  Q  A  A  K  I  E  V  P  M  V  V  R  L  L  R  Y  Y  A   : G  W  A  D  K  I  H  G  M  T  I  P  A  D  G  P  Y  H  V  Q  T  L  H  E  P  I  G  V  A  G  Q  I  I  P  W  N  F  P  L  L  M  F  S  W  K  I  G  P  A  L  A  C  G  N  T  I  V  L  K  T  A  E  Q  T  P  L  S  A  L  Y  V  A  S  L  F  Q  E  :  A  G  L  P  E  G  V  L  N  I  I  S  G  Y  G  A  T  A  G  A  S  L  C  S  H  M  D  V  D  K  :  L  A  F  T  G  S  T  E  T  G  K  T  I  L  E  L  A  A  K  S  N  L  K  P  V  T  L  E  L  G  G  K  S  P  F  I  V  C  E  D  A  D  I  D  T  A  V  E  Q  A  H  F  A  L  F  F  N  Q  :  G  Q  C  C  C  A  G  S  R  T  Y  V  H  E  K  V  Y  D  E  F  L  E  K  A  K  A  R  A  L  K  R  V  V  G  D  P  F  K  S  G  T  E  Q  G  P  Q  :  I  D  S  K  Q  F  D  K  I  M  K  Y  I  R  S </first_frame>
            <second_frame>  F  F  S  P  *  K  Q  C  C  N  F  H  L  Q  *  W  R  L  V  Y  F  S  L  V  L  F  I  C  Y  Q  R  :  E  K  D  P  I  L  A  K  *  L  L  I  N  T  A  Q  R  L  L  S  R  S  P  S  S  L  L  S  M  W  I  I  L  N  F  L  S  T  G  N  L  L  I  L  H  Q  :  E  K  L  S  R  L  S  T  P  G  Q  G  R  *  L  H  I  L  L  K  V  M  Q  K  I  L  I  G  Q  L  L  L  L  V  R  L  S  M  K  D  H  G  L  G  *  L  L  M :   K  G  Q  R  Y  C  C  A  L  L  I  *  L  K  N  I  T  I  K  L  Q  R  S  R  L  G  T  L  G  S  L  M  H  K  L  L  R  L  K  Y  Q  W  L  Y  V  Y  S  V  I  M  L  :  A  G  Q  I  K  F  M  V  *  P  F  L  P  M  D  H  I  M  F  K  R  C  M  N  R  S  G  L  L  V  R  L  S  H  G  I  F  L  F  S  C  F  L  G  R  L  A  L  L  *  L  V  V  T  Q  L  C  *  R  R  L  S  R  P  H  Y  L  H  C  M  *  Q  V  Y  F  R  R :   L  A  C  L  K  V  F  *  I  *  F  L  V  M  V  P  Q  L  V  L  L  C  V  V  I  W  M  W  I  S :   L  L  L  L  D  Q  Q  K  P  G  K  P  Y  L  N  W  L  L  R  A  I  L  S  L  *  H  W  N  L  E  G  N  P  L  L  L  F  V  R  M  L  I  L  I  R  P  L  N  K  L  I  L  L  S  S  L  I  R :   A  N  V  V  V  L  V  L  G  P  M  F  T  R  R  S  M  M  N  F  W  R  R  Q  R  H  A  P  *  N  E  *  L  V  I  R  L  N  Q  A  L  S  R  V  L  R :   L  I  Q  N  S  S  I  R  S  *  S  T  L  D   </second_frame>
            <third_frame>   F  F  L  L  E  N  S  A  V  I  F  I  S  N  N  G  G  S  C  I  S  L  S  F  C  S  S  A  I  K  G :   K  K  I  P  S  W  Q  N  S  C  L  *  I  Q  H  S  G  C  F  R  G  A  R  Q  A  Y  C  Q  C  G  S  Y  *  T  S  Y  Q  R  A  I  C  *  F  C  I  R :   K  N  F  P  D  S  R  P  Q  D  R  G  G  N  C  T  Y  C  *  R  *  C  R  R  Y  *  S  G  S  C  C  C  S  *  G  F  R  *  R  T  M  A  *  D  D  C  L   : *  K  V  K  D  I  A  A  P  C  *  S  D  *  K  T  *  R  S  N  C  N  A  R  D  L  G  H  W  E  A  L  C  T  S  C  *  D  *  S  T  N  G  C  T  S  T  P  L  L  C  W :   L  G  R  *  N  S  W  Y  D  H  S  C  R  W  T  I  S  C  S  N  V  A  *  T  D  R  G  C  W  S  D  Y  P  M  E  F  S  S  S  H  V  F  L  E  D  W  P  C  F  S  L  W  *  H  N  C  A  K  D  G  *  A  D  P  I  I  C  I  V  C  S  K  S  I  S  G   : G  W  P  A  *  R  C  S  E  Y  N  F  W  L  W  C  H  S  W  C  F  S  V  *  S  Y  G  C  G  *   : A  C  F  Y  W  I  N  R  N  R  E  N  H  T  *  I  G  C  *  E  Q  S  *  A  C  D  I  G  T  W  R  E  I  P  F  Y  C  L  *  G  C  *  Y  *  Y  G  R  *  T  S  S  F  C  S  L  L  *  S   : G  P  M  L  L  C  W  F  S  D  L  C  S  R  E  G  L  *  *  I  S  G  E  G  K  G  T  R  L  E  T  S  S  W  *  S  V  *  I  R  H  *  A  G  S  S   : D  *  F  K  T  V  R  *  D  H  E  V  H  *  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9717" stop="9780"/>
                    <exon start="10579" stop="10716"/>
                    <exon start="10826" stop="10968"/>
                    <exon start="11062" stop="11215"/>
                    <exon start="11326" stop="11555"/>
                    <exon start="11871" stop="11960"/>
                    <exon start="12680" stop="12853"/>
                    <exon start="12945" stop="13082"/>
                    <exon start="13236" stop="13280"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1176</number_coding_nucleotides>
                  <number_encoded_amino_acids>392</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSPIMAARVFLSRSVHLLSKGKRSHLGKIAAYKYSTAAAFEEPVKPTVNVDHTKLLINGQFVDSASGKTFPTLDPRTGEVIAHIAEGDAEDINRAVAAARKAFDEGPWPRMTAYERSKILLRLADLIEKHNDQIATLETWDTGKPYAQAAKIEVPMVVRLLRYYAGWADKIHGMTIPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFSWKIGPALACGNTIVLKTAEQTPLSALYVASLFQEAGLPEGVLNIISGYGATAGASLCSHMDVDKLAFTGSTETGKTILELAAKSNLKPVTLELGGKSPFIVCEDADIDTAVEQAHFALFFNQGQCCCAGSRTYVHEKVYDEFLEKAKARALKRVVGDPFKSGTEQGPQIDSKQFDKIMKYIRS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="13366" PGL_stop="14021"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13366" e_stop="13373"/>
            <exon e_start="13459" e_stop="13520"/>
            <exon e_start="13609" e_stop="14021"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.741" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13366" e_stop="13373" e_length="8"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.994">
            <gDNA_intron_boundary i_start="13374" i_stop="13458" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13459" e_stop="13520" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.741" acc_prob="0.999">
            <gDNA_intron_boundary i_start="13521" i_stop="13608" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13609" e_stop="14021" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13366" stop="13373"/>
              <exon start="13459" stop="13520"/>
              <exon start="13609" stop="14021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13514" stop="13520"/>
              <exon start="13609" stop="14016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13664" stop="14015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13726" stop="14021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230794" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTTAAG : GATGATATGCTGATTGCACAGGATGAGATTTTTGGTCCAGTACAGTCCATCTTAAAATTTAA : GGATCTTGATGAAGTGGTACGGAGAGCTAATAGTTCTCGGTATGGTCTAGCTGCTGGAGTATTTTCACAGAACATCGACACTGCAAACACGTTGGCACGAGCCTTGAGAGTTGGGACGGTATGGATTAATTGCTTTGATACGTTTGATGCTACAATTCCTTTTGGTGGCTATAAGATGAGTGGTCAGGGAAGAGAAAAGGGAGAATACGGTCTCAAAAATTACTTGCAAGTAAAGGCAGTTGTGACACCATTGAAGAATCCAGCATGGTTATAAACATAATCCTCTTAAAGCAATTTTTACAAATAAAACTAAATTATAGTGATATCAAGTTGCTCTAGTTCATGATGTTGATAACGATAAATGTTGATTTTCTTTCAAAACTTCTTTTATATACAAACTGCATTTGATGTCA</gDNA_template>
            <first_frame> M  L  R :   M  I  C  *  L  H  R  M  R  F  L  V  Q  Y  S  P  S  *  N  L   : R  I  L  M  K  W  Y  G  E  L  I  V  L  G  M  V  *  L  L  E  Y  F  H  R  T  S  T  L  Q  T  R  W  H  E  P  *  E  L  G  R  Y  G  L  I  A  L  I  R  L  M  L  Q  F  L  L  V  A  I  R  *  V  V  R  E  E  K  R  E  N  T  V  S  K  I  T  C  K  *  R  Q  L  *  H  H  *  R  I  Q  H  G  Y  K  H  N  P  L  K  A  I  F  T  N  K  T  K  L  *  *  Y  Q  V  A  L  V  H  D  V  D  N  D  K  C  *  F  S  F  K  T  S  F  I  Y  K  L  H  L  M  S </first_frame>
            <second_frame>  C  *   : G  *  Y  A  D  C  T  G  *  D  F  W  S  S  T  V  H  L  K  I  *  :  G  S  *  *  S  G  T  E  S  *  *  F  S  V  W  S  S  C  W  S  I  F  T  E  H  R  H  C  K  H  V  G  T  S  L  E  S  W  D  G  M  D  *  L  L  *  Y  V  *  C  Y  N  S  F  W  W  L  *  D  E  W  S  G  K  R  K  G  R  I  R  S  Q  K  L  L  A  S  K  G  S  C  D  T  I  E  E  S  S  M  V  I  N  I  I  L  L  K  Q  F  L  Q  I  K  L  N  Y  S  D  I  K  L  L  *  F  M  M  L  I  T  I  N  V  D  F  L  S  K  L  L  L  Y  T  N  C  I  *  C   </second_frame>
            <third_frame>   V  K  :  D  D  M  L  I  A  Q  D  E  I  F  G  P  V  Q  S  I  L  K  F  K :   D  L  D  E  V  V  R  R  A  N  S  S  R  Y  G  L  A  A  G  V  F  S  Q  N  I  D  T  A  N  T  L  A  R  A  L  R  V  G  T  V  W  I  N  C  F  D  T  F  D  A  T  I  P  F  G  G  Y  K  M  S  G  Q  G  R  E  K  G  E  Y  G  L  K  N  Y  L  Q  V  K  A  V  V  T  P  L  K  N  P  A  W  L  *  T  *  S  S  *  S  N  F  Y  K  *  N  *  I  I  V  I  S  S  C  S  S  S  *  C  *  *  R  *  M  L  I  F  F  Q  N  F  F  Y  I  Q  T  A  F  D  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13368" stop="13373"/>
                    <exon start="13459" stop="13520"/>
                    <exon start="13609" stop="13882"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKDDMLIAQDEIFGPVQSILKFKDLDEVVRRANSSRYGLAAGVFSQNIDTANTLARALRVGTVWINCFDTFDATIPFGGYKMSGQGREKGEYGLKNYLQVKAVVTPLKNPAWL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="18441" PGL_stop="18036"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18441" e_stop="18036"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="18441" e_stop="18036" e_length="406"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18441" stop="18036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277890" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTCCTATCGTATCGAATCAGAATATCCTTAATCTCCTTCTTCGTCTGCTCATCAACGTACTTCTGGTAGAAAGCAACAAGAGCCTTTGCAATTGACTGACGGATAGCGTAGATCTGAGAAGTATGACCTCCTCCTTTGACTCGGATTCTCATGTCAACTCCGGCGAATCGTTGACGACCTAGAAGGAGGATTGGCTCGAAAGCTTTGTACCGGAGAATCTCCGGCTGAACAAGCTCGATAGGAACTCCGTTGATTTTGATCAAACCACGACCACGCTTGCAGTGTGTCACCGCCACCGCCGTCTTCTTCCGCCCGAAACATTGCACGGACTCCACTGTCGCCGGTGCCGCCTGCATTTCTCCTGCTTTGATTATTTTGCTTAGTCTGATGGCCAAACTCGAAA</gDNA_template>
            <first_frame> K  V  L  S  Y  R  I  R  I  S  L  I  S  F  F  V  C  S  S  T  Y  F  W  *  K  A  T  R  A  F  A  I  D  *  R  I  A  *  I  *  E  V  *  P  P  P  L  T  R  I  L  M  S  T  P  A  N  R  *  R  P  R  R  R  I  G  S  K  A  L  Y  R  R  I  S  G  *  T  S  S  I  G  T  P  L  I  L  I  K  P  R  P  R  L  Q  C  V  T  A  T  A  V  F  F  R  P  K  H  C  T  D  S  T  V  A  G  A  A  C  I  S  P  A  L  I  I  L  L  S  L  M  A  K  L  E  </first_frame>
            <second_frame>  K  S  Y  R  I  E  S  E  Y  P  *  S  P  S  S  S  A  H  Q  R  T  S  G  R  K  Q  Q  E  P  L  Q  L  T  D  G  *  R  R  S  E  K  Y  D  L  L  L  *  L  G  F  S  C  Q  L  R  R  I  V  D  D  L  E  G  G  L  A  R  K  L  C  T  G  E  S  P  A  E  Q  A  R  *  E  L  R  *  F  *  S  N  H  D  H  A  C  S  V  S  P  P  P  P  S  S  S  A  R  N  I  A  R  T  P  L  S  P  V  P  P  A  F  L  L  L  *  L  F  C  L  V  *  W  P  N  S  K </second_frame>
            <third_frame>   S  P  I  V  S  N  Q  N  I  L  N  L  L  L  R  L  L  I  N  V  L  L  V  E  S  N  K  S  L  C  N  *  L  T  D  S  V  D  L  R  S  M  T  S  S  F  D  S  D  S  H  V  N  S  G  E  S  L  T  T  *  K  E  D  W  L  E  S  F  V  P  E  N  L  R  L  N  K  L  D  R  N  S  V  D  F  D  Q  T  T  T  T  L  A  V  C  H  R  H  R  R  L  L  P  P  E  T  L  H  G  L  H  C  R  R  C  R  L  H  F  S  C  F  D  Y  F  A  *  S  D  G  Q  T  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18256" stop="18056"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEDWLESFVPENLRLNKLDRNSVDFDQTTTTLAVCHRHRRLLPPETLHGLHCRRCRLHFSCFDYFA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="18043" PGL_stop="18759"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18043" e_stop="18759"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18043" e_stop="18759" e_length="717"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18043" stop="18711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18054" stop="18410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18055" stop="18649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18055" stop="18640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18055" stop="18576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18056" stop="18739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18056" stop="18739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18061" stop="18618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18062" stop="18662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18063" stop="18739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18064" stop="18697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18094" stop="18759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18109" stop="18744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373005" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGCCATCAGACTAAGCAAAATAATCAAAGCAGGAGAAATGCAGGCGGCACCGGCGACAGTGGAGTCCGTGCAATGTTTCGGGCGGAAGAAGACGGCGGTGGCGGTGACACACTGCAAGCGTGGTCGTGGTTTGATCAAAATCAACGGAGTTCCTATCGAGCTTGTTCAGCCGGAGATTCTCCGGTACAAAGCTTTCGAGCCAATCCTCCTTCTAGGTCGTCAACGATTCGCCGGAGTTGACATGAGAATCCGAGTCAAAGGAGGAGGTCATACTTCTCAGATCTACGCTATCCGTCAGTCAATTGCAAAGGCTCTTGTTGCTTTCTACCAGAAGTACGTTGATGAGCAGACGAAGAAGGAGATTAAGGATATTCTGATTCGATACGATAGGACTTTGCTTGTTGCTGATCCTAGACGTTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTAGGTTCCAGAAATCTTACCGTTAAATTTACGGTATATGTTCTATTGCTATTGGTGCTCTGCAATTTTGAGTATGGTTTCGATTTTAGGGATTATTATTATTATCTATTCACCATTAAAGCTATCTGAGTAAGCTTTGGATTTTGATGAACCGTAATGTAGTTGTTTTACGGTGGAATGATTTTATGTTATGTATGCATTGAAATATGTTTTTCCAATGCATAATATAAACTTATGCTATACAGTGTTGTTGCTTGAA</gDNA_template>
            <first_frame> F  G  H  Q  T  K  Q  N  N  Q  S  R  R  N  A  G  G  T  G  D  S  G  V  R  A  M  F  R  A  E  E  D  G  G  G  G  D  T  L  Q  A  W  S  W  F  D  Q  N  Q  R  S  S  Y  R  A  C  S  A  G  D  S  P  V  Q  S  F  R  A  N  P  P  S  R  S  S  T  I  R  R  S  *  H  E  N  P  S  Q  R  R  R  S  Y  F  S  D  L  R  Y  P  S  V  N  C  K  G  S  C  C  F  L  P  E  V  R  *  *  A  D  E  E  G  D  *  G  Y  S  D  S  I  R  *  D  F  A  C  C  *  S  *  T  L  *  A  *  E  V  W  W  S  W  C  S  F  *  V  P  E  I  L  P  L  N  L  R  Y  M  F  Y  C  Y  W  C  S  A  I  L  S  M  V  S  I  L  G  I  I  I  I  I  Y  S  P  L  K  L  S  E  *  A  L  D  F  D  E  P  *  C  S  C  F  T  V  E  *  F  Y  V  M  Y  A  L  K  Y  V  F  P  M  H  N  I  N  L  C  Y  T  V  L  L  L  E </first_frame>
            <second_frame>  L  A  I  R  L  S  K  I  I  K  A  G  E  M  Q  A  A  P  A  T  V  E  S  V  Q  C  F  G  R  K  K  T  A  V  A  V  T  H  C  K  R  G  R  G  L  I  K  I  N  G  V  P  I  E  L  V  Q  P  E  I  L  R  Y  K  A  F  E  P  I  L  L  L  G  R  Q  R  F  A  G  V  D  M  R  I  R  V  K  G  G  G  H  T  S  Q  I  Y  A  I  R  Q  S  I  A  K  A  L  V  A  F  Y  Q  K  Y  V  D  E  Q  T  K  K  E  I  K  D  I  L  I  R  Y  D  R  T  L  L  V  A  D  P  R  R  C  E  P  K  K  F  G  G  R  G  A  R  S  R  F  Q  K  S  Y  R  *  I  Y  G  I  C  S  I  A  I  G  A  L  Q  F  *  V  W  F  R  F  *  G  L  L  L  L  S  I  H  H  *  S  Y  L  S  K  L  W  I  L  M  N  R  N  V  V  V  L  R  W  N  D  F  M  L  C  M  H  *  N  M  F  F  Q  C  I  I  *  T  Y  A  I  Q  C  C  C  L   </second_frame>
            <third_frame>   W  P  S  D  *  A  K  *  S  K  Q  E  K  C  R  R  H  R  R  Q  W  S  P  C  N  V  S  G  G  R  R  R  R  W  R  *  H  T  A  S  V  V  V  V  *  S  K  S  T  E  F  L  S  S  L  F  S  R  R  F  S  G  T  K  L  S  S  Q  S  S  F  *  V  V  N  D  S  P  E  L  T  *  E  S  E  S  K  E  E  V  I  L  L  R  S  T  L  S  V  S  Q  L  Q  R  L  L  L  L  S  T  R  S  T  L  M  S  R  R  R  R  R  L  R  I  F  *  F  D  T  I  G  L  C  L  L  L  I  L  D  V  V  S  L  R  S  L  V  V  V  V  L  V  L  G  S  R  N  L  T  V  K  F  T  V  Y  V  L  L  L  L  V  L  C  N  F  E  Y  G  F  D  F  R  D  Y  Y  Y  Y  L  F  T  I  K  A  I  *  V  S  F  G  F  *  *  T  V  M  *  L  F  Y  G  G  M  I  L  C  Y  V  C  I  E  I  C  F  S  N  A  *  Y  K  L  M  L  Y  S  V  V  A  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18044" stop="18526"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAIRLSKIIKAGEMQAAPATVESVQCFGRKKTAVAVTHCKRGRGLIKINGVPIELVQPEILRYKAFEPILLLGRQRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQTKKEIKDILIRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="20453" PGL_stop="20180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20453" e_stop="20319"/>
            <exon e_start="20235" e_stop="20180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.904"/>
          <exon-only e_score="0.893"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="20453" e_stop="20319" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20318" i_stop="20236" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="0.893">
            <gDNA_exon_boundary e_start="20235" e_stop="20180" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20453" stop="20319"/>
              <exon start="20235" stop="20180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCTCGCATTAGCAAGAACGACTCTTCCCTTATGGAGGAACATCTGTTTGACTAAATTCATTCTATGATGTAAAAACTTATTGGTCTGAGTTCCTAACATGTTCAAGAATCTTACTTGGAGGTATTCAAATGAA : CTTGATTGCATTCTCCAAATATTATGTACTATATAATGGGCATATATAAATAAACA</gDNA_template>
            <first_frame> Y  L  A  L  A  R  T  T  L  P  L  W  R  N  I  C  L  T  K  F  I  L  *  C  K  N  L  L  V  *  V  P  N  M  F  K  N  L  T  W  R  Y  S  N  E  :  L  D  C  I  L  Q  I  L  C  T  I  *  W  A  Y  I  N  K   </first_frame>
            <second_frame>  I  S  H  *  Q  E  R  L  F  P  Y  G  G  T  S  V  *  L  N  S  F  Y  D  V  K  T  Y  W  S  E  F  L  T  C  S  R  I  L  L  G  G  I  Q  M  N :   L  I  A  F  S  K  Y  Y  V  L  Y  N  G  H  I  *  I  N  </second_frame>
            <third_frame>   S  R  I  S  K  N  D  S  S  L  M  E  E  H  L  F  D  *  I  H  S  M  M  *  K  L  I  G  L  S  S  *  H  V  Q  E  S  Y  L  E  V  F  K  *   : T  *  L  H  S  P  N  I  M  Y  Y  I  M  G  I  Y  K  *  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0261K11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="21831" PGL_stop="20615"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21831" e_stop="21814"/>
            <exon e_start="21723" e_stop="21623"/>
            <exon e_start="21313" e_stop="21105"/>
            <exon e_start="20878" e_stop="20615"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.421" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.780" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21831" e_stop="21814" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.947">
            <gDNA_intron_boundary i_start="21813" i_stop="21724" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21723" e_stop="21623" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.421" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21622" i_stop="21314" i_length="309"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21313" e_stop="21105" e_length="209"/>
          </exon>
          <intron i_serial="3" don_prob="0.780" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21104" i_stop="20879" i_length="226"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="20878" e_stop="20615" e_length="264"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21831" stop="21814"/>
              <exon start="21723" stop="21623"/>
              <exon start="21313" stop="21105"/>
              <exon start="20878" stop="20615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212233" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTAGATAAATCTTCAG : GTTCTGGACTAATCTCTAAAGAGAAATATTACTATGGTTTCTTTAATGCTGCACTAAAATTGCCTGCTCATTTTACATCAGGAGTTGTTGTTGCCTTTTAT : ATGTCAAACTCAGATGTGTTTCCACACAACCATGATGAAATAGACTTTGAATTGCTTGGACATGAGAAGAGAAGGGATTGGGTTTTACAGACAAATCTTTATGGAAATGGAAGTGTTCACACTGGAAGAGAAGAAAAATTCTACCTATGGTTTGATCCAACTTTGGATTTTCATGATTATACCATCCTTTGGAATAATCATCACATAGT : ATTTCTCGTGGACAATGTACCAGTAAGAGAAGTGGTTCACAACACAGCAATCTCTTCAGTTTACCCATCAAAGCCAATGTCAACTATATTGACAATATGGGATGGATCAGAATGGGCAACACATGGAGGAAAATACCCTGTAAACTATAATTATGCACCTTTTATAACAACAATCAAAGGTATTGAATTAGAAGGTTGTGTAAAACAACAACAAAATACATGTTCTAAGAGAAGTAGTACTTCAAGTTTGGACCCTGTTGATGG</gDNA_template>
            <first_frame> F  *  I  N  L  Q  :  V  L  D  *  S  L  K  R  N  I  T  M  V  S  L  M  L  H  *  N  C  L  L  I  L  H  Q  E  L  L  L  P  F  I :   C  Q  T  Q  M  C  F  H  T  T  M  M  K  *  T  L  N  C  L  D  M  R  R  E  G  I  G  F  Y  R  Q  I  F  M  E  M  E  V  F  T  L  E  E  K  K  N  S  T  Y  G  L  I  Q  L  W  I  F  M  I  I  P  S  F  G  I  I  I  T  *   : Y  F  S  W  T  M  Y  Q  *  E  K  W  F  T  T  Q  Q  S  L  Q  F  T  H  Q  S  Q  C  Q  L  Y  *  Q  Y  G  M  D  Q  N  G  Q  H  M  E  E  N  T  L  *  T  I  I  M  H  L  L  *  Q  Q  S  K  V  L  N  *  K  V  V  *  N  N  N  K  I  H  V  L  R  E  V  V  L  Q  V  W  T  L  L  M  </first_frame>
            <second_frame>  F  R  *  I  F  R :   F  W  T  N  L  *  R  E  I  L  L  W  F  L  *  C  C  T  K  I  A  C  S  F  Y  I  R  S  C  C  C  L  L   : Y  V  K  L  R  C  V  S  T  Q  P  *  *  N  R  L  *  I  A  W  T  *  E  E  K  G  L  G  F  T  D  K  S  L  W  K  W  K  C  S  H  W  K  R  R  K  I  L  P  M  V  *  S  N  F  G  F  S  *  L  Y  H  P  L  E  *  S  S  H  S  :  I  S  R  G  Q  C  T  S  K  R  S  G  S  Q  H  S  N  L  F  S  L  P  I  K  A  N  V  N  Y  I  D  N  M  G  W  I  R  M  G  N  T  W  R  K  I  P  C  K  L  *  L  C  T  F  Y  N  N  N  Q  R  Y  *  I  R  R  L  C  K  T  T  T  K  Y  M  F  *  E  K  *  Y  F  K  F  G  P  C  *  W </second_frame>
            <third_frame>   L  D  K  S  S   : G  S  G  L  I  S  K  E  K  Y  Y  Y  G  F  F  N  A  A  L  K  L  P  A  H  F  T  S  G  V  V  V  A  F  Y  :  M  S  N  S  D  V  F  P  H  N  H  D  E  I  D  F  E  L  L  G  H  E  K  R  R  D  W  V  L  Q  T  N  L  Y  G  N  G  S  V  H  T  G  R  E  E  K  F  Y  L  W  F  D  P  T  L  D  F  H  D  Y  T  I  L  W  N  N  H  H  I  V :   F  L  V  D  N  V  P  V  R  E  V  V  H  N  T  A  I  S  S  V  Y  P  S  K  P  M  S  T  I  L  T  I  W  D  G  S  E  W  A  T  H  G  G  K  Y  P  V  N  Y  N  Y  A  P  F  I  T  T  I  K  G  I  E  L  E  G  C  V  K  Q  Q  Q  N  T  C  S  K  R  S  S  T  S  S  L  D  P  V  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21829" stop="21814"/>
                    <exon start="21723" stop="21623"/>
                    <exon start="21313" stop="21105"/>
                    <exon start="20878" stop="20617"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDKSSGSGLISKEKYYYGFFNAALKLPAHFTSGVVVAFYMSNSDVFPHNHDEIDFELLGHEKRRDWVLQTNLYGNGSVHTGREEKFYLWFDPTLDFHDYTILWNNHHIVFLVDNVPVREVVHNTAISSVYPSKPMSTILTIWDGSEWATHGGKYPVNYNYAPFITTIKGIELEGCVKQQQNTCSKRSSTSSLDPVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="60885" PGL_stop="61412"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60885" e_stop="61412"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="60885" e_stop="61412" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60885" stop="61412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60885" stop="61411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60888" stop="61412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261469" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAAGTTCAAGACCCAAGGGCTGCAGGACAAGTAAGAGGAGAAAAGATTCAGGCAACAGCTAAAACAGGAAACAGGCTTCAGGTTTGCAGATCATCATTATCTGCAGTTTTTTTCAAGGAATGTACTGTACTCTTATGTATACCAGCCAGGCCAATGGTTGAAATTCTTTAAGCATAAAGGAAGGTTTGCAACATCCTATCCTATAAACTTCAGGGAGCAGACTCTGCACCAACTCTATCTATTGTTTGGAGAATCGAAAGACGCTGTTTTGCTCTATGACTTGGTAGAAGTGGCAGACTTTGTTCCAGCATATGGCCTCTCTTTTTGAGTTTACATACAACAAAAAGGCCTTAATATGCCGATAAGATTGTGGCATTTGGGGTTTTATATATACAGATTTGGTTAGGAGGCAGGCGTATTAGTTTAAACAGCTGTTGTACATAGTAAAGCAAGTTTGAACAGTTAATGTCATCTCATGTATATAAGTTTTTATATAGACTAGCTTTGCTGTTCGTCAGATTACCTT</gDNA_template>
            <first_frame> *  K  F  K  T  Q  G  L  Q  D  K  *  E  E  K  R  F  R  Q  Q  L  K  Q  E  T  G  F  R  F  A  D  H  H  Y  L  Q  F  F  S  R  N  V  L  Y  S  Y  V  Y  Q  P  G  Q  W  L  K  F  F  K  H  K  G  R  F  A  T  S  Y  P  I  N  F  R  E  Q  T  L  H  Q  L  Y  L  L  F  G  E  S  K  D  A  V  L  L  Y  D  L  V  E  V  A  D  F  V  P  A  Y  G  L  S  F  *  V  Y  I  Q  Q  K  G  L  N  M  P  I  R  L  W  H  L  G  F  Y  I  Y  R  F  G  *  E  A  G  V  L  V  *  T  A  V  V  H  S  K  A  S  L  N  S  *  C  H  L  M  Y  I  S  F  Y  I  D  *  L  C  C  S  S  D  Y  L </first_frame>
            <second_frame>  E  S  S  R  P  K  G  C  R  T  S  K  R  R  K  D  S  G  N  S  *  N  R  K  Q  A  S  G  L  Q  I  I  I  I  C  S  F  F  Q  G  M  Y  C  T  L  M  Y  T  S  Q  A  N  G  *  N  S  L  S  I  K  E  G  L  Q  H  P  I  L  *  T  S  G  S  R  L  C  T  N  S  I  Y  C  L  E  N  R  K  T  L  F  C  S  M  T  W  *  K  W  Q  T  L  F  Q  H  M  A  S  L  F  E  F  T  Y  N  K  K  A  L  I  C  R  *  D  C  G  I  W  G  F  I  Y  T  D  L  V  R  R  Q  A  Y  *  F  K  Q  L  L  Y  I  V  K  Q  V  *  T  V  N  V  I  S  C  I  *  V  F  I  *  T  S  F  A  V  R  Q  I  T   </second_frame>
            <third_frame>   K  V  Q  D  P  R  A  A  G  Q  V  R  G  E  K  I  Q  A  T  A  K  T  G  N  R  L  Q  V  C  R  S  S  L  S  A  V  F  F  K  E  C  T  V  L  L  C  I  P  A  R  P  M  V  E  I  L  *  A  *  R  K  V  C  N  I  L  S  Y  K  L  Q  G  A  D  S  A  P  T  L  S  I  V  W  R  I  E  R  R  C  F  A  L  *  L  G  R  S  G  R  L  C  S  S  I  W  P  L  F  L  S  L  H  T  T  K  R  P  *  Y  A  D  K  I  V  A  F  G  V  L  Y  I  Q  I  W  L  G  G  R  R  I  S  L  N  S  C  C  T  *  *  S  K  F  E  Q  L  M  S  S  H  V  Y  K  F  L  Y  R  L  A  L  L  F  V  R  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60921" stop="61214"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEKRFRQQLKQETGFRFADHHYLQFFSRNVLYSYVYQPGQWLKFFKHKGRFATSYPINFREQTLHQLYLLFGESKDAVLLYDLVEVADFVPAYGLSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="87728" PGL_stop="85616"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87728" e_stop="87264"/>
            <exon e_start="86067" e_stop="86019"/>
            <exon e_start="85671" e_stop="85616"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.966" e_score="1.000"/>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87728" e_stop="87264" e_length="465"/>
          </exon>
          <intron i_serial="1" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87263" i_stop="86068" i_length="1196"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86067" e_stop="86019" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.933" acc_prob="0.966">
            <gDNA_intron_boundary i_start="86018" i_stop="85672" i_length="347"/>
          </intron>
          <exon e_serial="3" e_score="0.946">
            <gDNA_exon_boundary e_start="85671" e_stop="85616" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87728" stop="87400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87704" stop="87264"/>
              <exon start="86067" stop="86019"/>
              <exon start="85671" stop="85616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAATGCAGTGTTTTGGGGTAGGTTACGGTCTAGTATTCTTGGTTTAGCAGCAGCATCGATGTTATAGCTCTCTTTTACTCTCAGAGTCGAAGCTTTTCCTTTCGTCTTGCTCTCTTTTGGAGTGGAATTTTCGTTTTTGATCTCTCGATGTTGCTGTAGTTGAATGAAATTCTAAATGGCACGGTTAGTTATTGATTGGAGTACGCTAATAGACGACAAGCCTCCGGCCGAGTTGGTGGTCGCTACTAAAGCAACTCCGATGATTAGCATAGACGACGGGGAAGAGCAAAATGACGAGTTTTCAAACCTAAGGATTGATGAACTGACTGAAAAAATTAACAGGTTCAAAAGTTTGTTGAGCACCAAAGGCCCTAGATTAGTTGACGGGGGCGAGAAACTGAAAACAACAATAAAAAAGTACGAGGCTGAATTTGAGAGGAGAAAATTGCTAAACTCCGATAAG : GGAACAGATGGATGTGCCTTATTGGGGAGGCATCACTCTAGTTCTATTG : GTGCAGCTAATGACCTAGGGCAGCGGTCTGCACAATCAGCACCACGCTCGCAATCT</gDNA_template>
            <first_frame> P  N  A  V  F  W  G  R  L  R  S  S  I  L  G  L  A  A  A  S  M  L  *  L  S  F  T  L  R  V  E  A  F  P  F  V  L  L  S  F  G  V  E  F  S  F  L  I  S  R  C  C  C  S  *  M  K  F  *  M  A  R  L  V  I  D  W  S  T  L  I  D  D  K  P  P  A  E  L  V  V  A  T  K  A  T  P  M  I  S  I  D  D  G  E  E  Q  N  D  E  F  S  N  L  R  I  D  E  L  T  E  K  I  N  R  F  K  S  L  L  S  T  K  G  P  R  L  V  D  G  G  E  K  L  K  T  T  I  K  K  Y  E  A  E  F  E  R  R  K  L  L  N  S  D  K  :  G  T  D  G  C  A  L  L  G  R  H  H  S  S  S  I   : G  A  A  N  D  L  G  Q  R  S  A  Q  S  A  P  R  S  Q  S </first_frame>
            <second_frame>  P  M  Q  C  F  G  V  G  Y  G  L  V  F  L  V  *  Q  Q  H  R  C  Y  S  S  L  L  L  S  E  S  K  L  F  L  S  S  C  S  L  L  E  W  N  F  R  F  *  S  L  D  V  A  V  V  E  *  N  S  K  W  H  G  *  L  L  I  G  V  R  *  *  T  T  S  L  R  P  S  W  W  S  L  L  K  Q  L  R  *  L  A  *  T  T  G  K  S  K  M  T  S  F  Q  T  *  G  L  M  N  *  L  K  K  L  T  G  S  K  V  C  *  A  P  K  A  L  D  *  L  T  G  A  R  N  *  K  Q  Q  *  K  S  T  R  L  N  L  R  G  E  N  C  *  T  P  I  R :   E  Q  M  D  V  P  Y  W  G  G  I  T  L  V  L  L  :  V  Q  L  M  T  *  G  S  G  L  H  N  Q  H  H  A  R  N   </second_frame>
            <third_frame>   Q  C  S  V  L  G  *  V  T  V  *  Y  S  W  F  S  S  S  I  D  V  I  A  L  F  Y  S  Q  S  R  S  F  S  F  R  L  A  L  F  W  S  G  I  F  V  F  D  L  S  M  L  L  *  L  N  E  I  L  N  G  T  V  S  Y  *  L  E  Y  A  N  R  R  Q  A  S  G  R  V  G  G  R  Y  *  S  N  S  D  D  *  H  R  R  R  G  R  A  K  *  R  V  F  K  P  K  D  *  *  T  D  *  K  N  *  Q  V  Q  K  F  V  E  H  Q  R  P  *  I  S  *  R  G  R  E  T  E  N  N  N  K  K  V  R  G  *  I  *  E  E  K  I  A  K  L  R  *   : G  N  R  W  M  C  L  I  G  E  A  S  L  *  F  Y  W :   C  S  *  *  P  R  A  A  V  C  T  I  S  T  T  L  A  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87551" stop="87264"/>
                    <exon start="86067" stop="86019"/>
                    <exon start="85671" stop="85616"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MARLVIDWSTLIDDKPPAELVVATKATPMISIDDGEEQNDEFSNLRIDELTEKINRFKSLLSTKGPRLVDGGEKLKTTIKKYEAEFERRKLLNSDKGTDGCALLGRHHSSSIGAANDLGQRSAQSAPRSQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="89006" PGL_stop="92457"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89006" e_stop="89541"/>
            <exon e_start="90913" e_stop="91166"/>
            <exon e_start="91301" e_stop="91453"/>
            <exon e_start="91862" e_stop="92300"/>
            <exon e_start="92411" e_stop="92457"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.583" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.865" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89006" e_stop="89541" e_length="536"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="89542" i_stop="90912" i_length="1371"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90913" e_stop="91166" e_length="254"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91167" i_stop="91300" i_length="134"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91301" e_stop="91453" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="0.583" acc_prob="0.963">
            <gDNA_intron_boundary i_start="91454" i_stop="91861" i_length="408"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="91862" e_stop="92300" e_length="439"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.865">
            <gDNA_intron_boundary i_start="92301" i_stop="92410" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="92411" e_stop="92457" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89006" stop="89541"/>
              <exon start="90913" stop="90946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89017" stop="89541"/>
              <exon start="90913" stop="91029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89024" stop="89541"/>
              <exon start="90913" stop="91029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89024" stop="89362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89471" stop="89541"/>
              <exon start="90913" stop="91166"/>
              <exon start="91301" stop="91440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90913" stop="91166"/>
              <exon start="91301" stop="91453"/>
              <exon start="91862" stop="92150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90913" stop="91166"/>
              <exon start="91301" stop="91453"/>
              <exon start="91862" stop="92118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91021" stop="91166"/>
              <exon start="91301" stop="91453"/>
              <exon start="91862" stop="92300"/>
              <exon start="92411" stop="92457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91022" stop="91166"/>
              <exon start="91301" stop="91453"/>
              <exon start="91862" stop="92062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91022" stop="91166"/>
              <exon start="91301" stop="91453"/>
              <exon start="91862" stop="92033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91082" stop="91166"/>
              <exon start="91301" stop="91453"/>
              <exon start="91862" stop="92137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91346" stop="91453"/>
              <exon start="91862" stop="92300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339231" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCTCACTCCCAAACCCACAATCTTCGGCTACCAATTTCCACATCCATGGCGGATTCAGCTCCTTCGCCGGAAAATTCCGCCGTCGCAAATTCACAACCACTGACAGAATCTGACAACAAAACCTCGCAATCAGATCCATCTCCGGCACCGTCGTTATCTTCACCTCTGCCACCACCTCCGCCGTTGATCCAGCCTTACTCCGGTACACCTCCGTCGTTTCGTCCGGCGACGCCACCAGCACCACTACCTGGTGTTGGTGTAGCTCCTATGTTCTCGCCTCTTCCTAACCCTAACTTGCAGCAGCAAACATTGAATTTTCCGAATCCTTCGGTTCAGCCTCCCGGAGTGAATTCTGTGCCGCCGTCGATGATTCCAGCACCTACAGCTGGTGCTGGAGCTGTCCAGATGGGTTCGGCGCCGCAAATTATGCCACCTTATGCTATGCCTGGACAGATGGTGAGACCATACGCTCCTATGCCTAACGGTTACCATGCTATGCCTCAACCTGCTCCACAGGGCGCCATGATTCATCCCG : GAATTCCGCGTTATGCATCACCGTACACACAGATGGCTCGACCAGTTTTTCCTCCACGCCCACTTGGTGCAGTTGGCATTATTCCTCCCTTGATGCGCCCTCCAATCCCTATGATGCGTCCTCCAATCATTCCTCCTGTTGCCAGGCCAGCTGCCATCCCAAGCATTACTCAAACAGAGAAACCACAAACAACAGTTTATGTTGGCAAGATATCGTCCACTGCAGAAAATGATTTTATGCTTTCTCTTTTGCAG : CTCTGCGGGCCTGTTAGGAGTTGGAAGCGTGCTCAAGATCCGACTAATGGATCACTTAAAGGTTTTGGGTTTTGTGAGTTTGAGTCTGCTGAGGGGGTTCTCCGTGCATTAAGATTGCTCAACAAATTAAACATCGATGGGCAGGAGCTAATG : TTAAATGTCAATCAAGCAACTCGCGATTTCCTTGAACGGTATGTTGAAAAGAAAGCAGAGAACTCAAAGAAACCCAAAGAATCTGAAAGTGAAGGCACTGAGAAAGAAGGAGAAAGTGCATTAGGTGGGGAGACAAATGAAAATCCAAAGACGACCGCTGAACCTCCTGAGTCTAGTACAGAAGAATCAAAGCAAGATAGTGGTGATAAAGGGAACAAAGAAAATCTTGATGCTGCTAACTTTGGTCTGGTCACTGACGAAGATAGGCAAGCTGACAAAGAGGCCTTGGAGAAGCTCAAGGATATGATCGAGGAAAGGCTGAAGAATAAACCATTACCACCTCCACCTCCACCTCCACAAGCACCTAAAGATGGTTCTGATAACTCATATACGGAAGACCTCAAAGATGGAGAACCAGGTAGAGATACAGCAAAAAATG : AAGAAAAAAATGATGATGTCAACGAAAGTAAAACTTCAAGTGAGCAT</gDNA_template>
            <first_frame> G  S  L  P  N  P  Q  S  S  A  T  N  F  H  I  H  G  G  F  S  S  F  A  G  K  F  R  R  R  K  F  T  T  T  D  R  I  *  Q  Q  N  L  A  I  R  S  I  S  G  T  V  V  I  F  T  S  A  T  T  S  A  V  D  P  A  L  L  R  Y  T  S  V  V  S  S  G  D  A  T  S  T  T  T  W  C  W  C  S  S  Y  V  L  A  S  S  *  P  *  L  A  A  A  N  I  E  F  S  E  S  F  G  S  A  S  R  S  E  F  C  A  A  V  D  D  S  S  T  Y  S  W  C  W  S  C  P  D  G  F  G  A  A  N  Y  A  T  L  C  Y  A  W  T  D  G  E  T  I  R  S  Y  A  *  R  L  P  C  Y  A  S  T  C  S  T  G  R  H  D  S  S  R :   N  S  A  L  C  I  T  V  H  T  D  G  S  T  S  F  S  S  T  P  T  W  C  S  W  H  Y  S  S  L  D  A  P  S  N  P  Y  D  A  S  S  N  H  S  S  C  C  Q  A  S  C  H  P  K  H  Y  S  N  R  E  T  T  N  N  S  L  C  W  Q  D  I  V  H  C  R  K  *  F  Y  A  F  S  F  A   : A  L  R  A  C  *  E  L  E  A  C  S  R  S  D  *  W  I  T  *  R  F  W  V  L  *  V  *  V  C  *  G  G  S  P  C  I  K  I  A  Q  Q  I  K  H  R  W  A  G  A  N   : V  K  C  Q  S  S  N  S  R  F  P  *  T  V  C  *  K  E  S  R  E  L  K  E  T  Q  R  I  *  K  *  R  H  *  E  R  R  R  K  C  I  R  W  G  D  K  *  K  S  K  D  D  R  *  T  S  *  V  *  Y  R  R  I  K  A  R  *  W  *  *  R  E  Q  R  K  S  *  C  C  *  L  W  S  G  H  *  R  R  *  A  S  *  Q  R  G  L  G  E  A  Q  G  Y  D  R  G  K  A  E  E  *  T  I  T  T  S  T  S  T  S  T  S  T  *  R  W  F  *  *  L  I  Y  G  R  P  Q  R  W  R  T  R  *  R  Y  S  K  K  * :   R  K  K  *  *  C  Q  R  K  *  N  F  K  *  A  </first_frame>
            <second_frame>  A  H  S  Q  T  H  N  L  R  L  P  I  S  T  S  M  A  D  S  A  P  S  P  E  N  S  A  V  A  N  S  Q  P  L  T  E  S  D  N  K  T  S  Q  S  D  P  S  P  A  P  S  L  S  S  P  L  P  P  P  P  P  L  I  Q  P  Y  S  G  T  P  P  S  F  R  P  A  T  P  P  A  P  L  P  G  V  G  V  A  P  M  F  S  P  L  P  N  P  N  L  Q  Q  Q  T  L  N  F  P  N  P  S  V  Q  P  P  G  V  N  S  V  P  P  S  M  I  P  A  P  T  A  G  A  G  A  V  Q  M  G  S  A  P  Q  I  M  P  P  Y  A  M  P  G  Q  M  V  R  P  Y  A  P  M  P  N  G  Y  H  A  M  P  Q  P  A  P  Q  G  A  M  I  H  P   : G  I  P  R  Y  A  S  P  Y  T  Q  M  A  R  P  V  F  P  P  R  P  L  G  A  V  G  I  I  P  P  L  M  R  P  P  I  P  M  M  R  P  P  I  I  P  P  V  A  R  P  A  A  I  P  S  I  T  Q  T  E  K  P  Q  T  T  V  Y  V  G  K  I  S  S  T  A  E  N  D  F  M  L  S  L  L  Q  :  L  C  G  P  V  R  S  W  K  R  A  Q  D  P  T  N  G  S  L  K  G  F  G  F  C  E  F  E  S  A  E  G  V  L  R  A  L  R  L  L  N  K  L  N  I  D  G  Q  E  L  M  :  L  N  V  N  Q  A  T  R  D  F  L  E  R  Y  V  E  K  K  A  E  N  S  K  K  P  K  E  S  E  S  E  G  T  E  K  E  G  E  S  A  L  G  G  E  T  N  E  N  P  K  T  T  A  E  P  P  E  S  S  T  E  E  S  K  Q  D  S  G  D  K  G  N  K  E  N  L  D  A  A  N  F  G  L  V  T  D  E  D  R  Q  A  D  K  E  A  L  E  K  L  K  D  M  I  E  E  R  L  K  N  K  P  L  P  P  P  P  P  P  P  Q  A  P  K  D  G  S  D  N  S  Y  T  E  D  L  K  D  G  E  P  G  R  D  T  A  K  N   : E  E  K  N  D  D  V  N  E  S  K  T  S  S  E  H </second_frame>
            <third_frame>   L  T  P  K  P  T  I  F  G  Y  Q  F  P  H  P  W  R  I  Q  L  L  R  R  K  I  P  P  S  Q  I  H  N  H  *  Q  N  L  T  T  K  P  R  N  Q  I  H  L  R  H  R  R  Y  L  H  L  C  H  H  L  R  R  *  S  S  L  T  P  V  H  L  R  R  F  V  R  R  R  H  Q  H  H  Y  L  V  L  V  *  L  L  C  S  R  L  F  L  T  L  T  C  S  S  K  H  *  I  F  R  I  L  R  F  S  L  P  E  *  I  L  C  R  R  R  *  F  Q  H  L  Q  L  V  L  E  L  S  R  W  V  R  R  R  K  L  C  H  L  M  L  C  L  D  R  W  *  D  H  T  L  L  C  L  T  V  T  M  L  C  L  N  L  L  H  R  A  P  *  F  I  P  :  E  F  R  V  M  H  H  R  T  H  R  W  L  D  Q  F  F  L  H  A  H  L  V  Q  L  A  L  F  L  P  *  C  A  L  Q  S  L  *  C  V  L  Q  S  F  L  L  L  P  G  Q  L  P  S  Q  A  L  L  K  Q  R  N  H  K  Q  Q  F  M  L  A  R  Y  R  P  L  Q  K  M  I  L  C  F  L  F  C  S :   S  A  G  L  L  G  V  G  S  V  L  K  I  R  L  M  D  H  L  K  V  L  G  F  V  S  L  S  L  L  R  G  F  S  V  H  *  D  C  S  T  N  *  T  S  M  G  R  S  *  C :   *  M  S  I  K  Q  L  A  I  S  L  N  G  M  L  K  R  K  Q  R  T  Q  R  N  P  K  N  L  K  V  K  A  L  R  K  K  E  K  V  H  *  V  G  R  Q  M  K  I  Q  R  R  P  L  N  L  L  S  L  V  Q  K  N  Q  S  K  I  V  V  I  K  G  T  K  K  I  L  M  L  L  T  L  V  W  S  L  T  K  I  G  K  L  T  K  R  P  W  R  S  S  R  I  *  S  R  K  G  *  R  I  N  H  Y  H  L  H  L  H  L  H  K  H  L  K  M  V  L  I  T  H  I  R  K  T  S  K  M  E  N  Q  V  E  I  Q  Q  K  M  :  K  K  K  M  M  M  S  T  K  V  K  L  Q  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89007" stop="89541"/>
                    <exon start="90913" stop="91166"/>
                    <exon start="91301" stop="91453"/>
                    <exon start="91862" stop="92300"/>
                    <exon start="92411" stop="92457"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1428</number_coding_nucleotides>
                  <number_encoded_amino_acids>476</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AHSQTHNLRLPISTSMADSAPSPENSAVANSQPLTESDNKTSQSDPSPAPSLSSPLPPPPPLIQPYSGTPPSFRPATPPAPLPGVGVAPMFSPLPNPNLQQQTLNFPNPSVQPPGVNSVPPSMIPAPTAGAGAVQMGSAPQIMPPYAMPGQMVRPYAPMPNGYHAMPQPAPQGAMIHPGIPRYASPYTQMARPVFPPRPLGAVGIIPPLMRPPIPMMRPPIIPPVARPAAIPSITQTEKPQTTVYVGKISSTAENDFMLSLLQLCGPVRSWKRAQDPTNGSLKGFGFCEFESAEGVLRALRLLNKLNIDGQELMLNVNQATRDFLERYVEKKAENSKKPKESESEGTEKEGESALGGETNENPKTTAEPPESSTEESKQDSGDKGNKENLDAANFGLVTDEDRQADKEALEKLKDMIEERLKNKPLPPPPPPPQAPKDGSDNSYTEDLKDGEPGRDTAKNEEKNDDVNESKTSSEH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="89015" e_stop="89541"/>
            <exon e_start="90061" e_stop="90210"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.906" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89015" e_stop="89541" e_length="527"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.906">
            <gDNA_intron_boundary i_start="89542" i_stop="90060" i_length="519"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90061" e_stop="90210" e_length="150"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89015" stop="89541"/>
              <exon start="90061" stop="90210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89024" stop="89362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331364" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAACCCACAATCTTCGGCTACCAATTTCCACATCCATGGCGGATTCAGCTCCTTCGCCGGAAAATTCCGCCGTCGCAAATTCACAACCACTGACAGAATCTGACAACAAAACCTCGCAATCAGATCCATCTCCGGCACCGTCGTTATCTTCACCTCTGCCACCACCTCCGCCGTTGATCCAGCCTTACTCCGGTACACCTCCGTCGTTTCGTCCGGCGACGCCACCAGCACCACTACCTGGTGTTGGTGTAGCTCCTATGTTCTCGCCTCTTCCTAACCCTAACTTGCAGCAGCAAACATTGAATTTTCCGAATCCTTCGGTTCAGCCTCCCGGAGTGAATTCTGTGCCGCCGTCGATGATTCCAGCACCTACAGCTGGTGCTGGAGCTGTCCAGATGGGTTCGGCGCCGCAAATTATGCCACCTTATGCTATGCCTGGACAGATGGTGAGACCATACGCTCCTATGCCTAACGGTTACCATGCTATGCCTCAACCTGCTCCACAGGGCGCCATGATTCATCCCG : TTTCTTGAATGGTTTCGGTGAGAAAGGTGGGAAGGCTTCATATTGCTGTTCATTAGAGACTACTGAGTACTCCAACTGCTTTTTTGGTATGAGCACGTTTGCTTGTTTTTGTTTTTATTTTCATTTATCATTACAAGGTCATTTGCTTTC</gDNA_template>
            <first_frame> P  N  P  Q  S  S  A  T  N  F  H  I  H  G  G  F  S  S  F  A  G  K  F  R  R  R  K  F  T  T  T  D  R  I  *  Q  Q  N  L  A  I  R  S  I  S  G  T  V  V  I  F  T  S  A  T  T  S  A  V  D  P  A  L  L  R  Y  T  S  V  V  S  S  G  D  A  T  S  T  T  T  W  C  W  C  S  S  Y  V  L  A  S  S  *  P  *  L  A  A  A  N  I  E  F  S  E  S  F  G  S  A  S  R  S  E  F  C  A  A  V  D  D  S  S  T  Y  S  W  C  W  S  C  P  D  G  F  G  A  A  N  Y  A  T  L  C  Y  A  W  T  D  G  E  T  I  R  S  Y  A  *  R  L  P  C  Y  A  S  T  C  S  T  G  R  H  D  S  S  R :   F  L  N  G  F  G  E  K  G  G  K  A  S  Y  C  C  S  L  E  T  T  E  Y  S  N  C  F  F  G  M  S  T  F  A  C  F  C  F  Y  F  H  L  S  L  Q  G  H  L  L   </first_frame>
            <second_frame>  Q  T  H  N  L  R  L  P  I  S  T  S  M  A  D  S  A  P  S  P  E  N  S  A  V  A  N  S  Q  P  L  T  E  S  D  N  K  T  S  Q  S  D  P  S  P  A  P  S  L  S  S  P  L  P  P  P  P  P  L  I  Q  P  Y  S  G  T  P  P  S  F  R  P  A  T  P  P  A  P  L  P  G  V  G  V  A  P  M  F  S  P  L  P  N  P  N  L  Q  Q  Q  T  L  N  F  P  N  P  S  V  Q  P  P  G  V  N  S  V  P  P  S  M  I  P  A  P  T  A  G  A  G  A  V  Q  M  G  S  A  P  Q  I  M  P  P  Y  A  M  P  G  Q  M  V  R  P  Y  A  P  M  P  N  G  Y  H  A  M  P  Q  P  A  P  Q  G  A  M  I  H  P   : V  S  *  M  V  S  V  R  K  V  G  R  L  H  I  A  V  H  *  R  L  L  S  T  P  T  A  F  L  V  *  A  R  L  L  V  F  V  F  I  F  I  Y  H  Y  K  V  I  C  F  </second_frame>
            <third_frame>   K  P  T  I  F  G  Y  Q  F  P  H  P  W  R  I  Q  L  L  R  R  K  I  P  P  S  Q  I  H  N  H  *  Q  N  L  T  T  K  P  R  N  Q  I  H  L  R  H  R  R  Y  L  H  L  C  H  H  L  R  R  *  S  S  L  T  P  V  H  L  R  R  F  V  R  R  R  H  Q  H  H  Y  L  V  L  V  *  L  L  C  S  R  L  F  L  T  L  T  C  S  S  K  H  *  I  F  R  I  L  R  F  S  L  P  E  *  I  L  C  R  R  R  *  F  Q  H  L  Q  L  V  L  E  L  S  R  W  V  R  R  R  K  L  C  H  L  M  L  C  L  D  R  W  *  D  H  T  L  L  C  L  T  V  T  M  L  C  L  N  L  L  H  R  A  P  *  F  I  P  :  F  L  E  W  F  R  *  E  R  W  E  G  F  I  L  L  F  I  R  D  Y  *  V  L  Q  L  L  F  W  Y  E  H  V  C  L  F  L  F  L  F  S  F  I  I  T  R  S  F  A  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89016" stop="89541"/>
                    <exon start="90061" stop="90068"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTHNLRLPISTSMADSAPSPENSAVANSQPLTESDNKTSQSDPSPAPSLSSPLPPPPPLIQPYSGTPPSFRPATPPAPLPGVGVAPMFSPLPNPNLQQQTLNFPNPSVQPPGVNSVPPSMIPAPTAGAGAVQMGSAPQIMPPYAMPGQMVRPYAPMPNGYHAMPQPAPQGAMIHPVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="92978" PGL_stop="94577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92978" e_stop="93055"/>
            <exon e_start="93146" e_stop="93729"/>
            <exon e_start="94207" e_stop="94577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92978" e_stop="93055" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93056" i_stop="93145" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="93146" e_stop="93729" e_length="584"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="93730" i_stop="94206" i_length="477"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94207" e_stop="94577" e_length="371"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92978" stop="93055"/>
              <exon start="93146" stop="93729"/>
              <exon start="94207" stop="94286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93332" stop="93729"/>
              <exon start="94207" stop="94337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93409" stop="93729"/>
              <exon start="94207" stop="94577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTTATTTCATATGAGGAAAACAATCTTGATAGCCAAGATAAGAATATCGAGACAGCTCATTTTAATTTAAGCCAGG : GTGAAGGAGTTGCACAAAATGGGACTGATGAAGAATCCGTGCGTGCAGTTACTGCAACATCAGACATGAGGCATAATAGCAATGCCCCTACAAAAAGGTTAGAATTTGGCCTCTCAGGGTCAGGAAAAAGAGCTGCTGTCCCTTCTTTCTTCAATGCGGATGAGGATGAGGATACTCAAAAAGAAAAGAAAATGAGGCCATTGGTTCCAATTGACTACTCAGCTGACGAACATATGGTCCAACCTTCCATCTCTGTAGCATCGCCGACTATGGCTGCAGAATTTGCAAAGCGAATTTCAAATGTCAATGCTAAAGAAGAGAGGCCTGATATAGAGAAGGAGAGACACAGAAGAACTCATGACAGATCCAGCCAGAGGGATCGGGACAGGCATGACGAGGAGACTAACCGAACCAGGGATGACGGTAGAAACCTTGATCATGGCAGAGTTCGGGAAACTAGACCTGATAAGGTTAAGACACCTGATAATCAGAAGCTTTTAGATGCAAAGCAATTGATTGACATGATTCCAAAGACCAAAGATGAGTTGTTCTCTTATGAGATAAACTGGGCTACTTATGACAAG : AATGCATTACATGAAAGGATGAGACCGTGGATCAGTAAGAAGATCACTGATTTCCTTGGTGAGGAGGAGCCGACGCTGGTAGACTACATCGTCTCCAGCACTCAAGAACATGTCAAGGCAACTGAGATGCTGGAGAGGCTCCAAAGTATATTAGATGAAGAAGCTGAAATGTTTGTTCTGAAGATGTGGAGGATGCTTATATTTGAAATCAAGAAAGTTGAGACAGGTCTGGCTTTAAGGCCCAAATCCTAATTTCAGTTGTGTTCTCACCTGTAACTTGAAAGCATATTCATTAACTCTTGCTACTCTATCAAATCATTGTAGAATTGTTTTCTTTCAAGCTTAAAAATGACAAATAGTTTAGGTCAAAA</gDNA_template>
            <first_frame> K  L  F  H  M  R  K  T  I  L  I  A  K  I  R  I  S  R  Q  L  I  L  I  *  A  R  :  V  K  E  L  H  K  M  G  L  M  K  N  P  C  V  Q  L  L  Q  H  Q  T  *  G  I  I  A  M  P  L  Q  K  G  *  N  L  A  S  Q  G  Q  E  K  E  L  L  S  L  L  S  S  M  R  M  R  M  R  I  L  K  K  K  R  K  *  G  H  W  F  Q  L  T  T  Q  L  T  N  I  W  S  N  L  P  S  L  *  H  R  R  L  W  L  Q  N  L  Q  S  E  F  Q  M  S  M  L  K  K  R  G  L  I  *  R  R  R  D  T  E  E  L  M  T  D  P  A  R  G  I  G  T  G  M  T  R  R  L  T  E  P  G  M  T  V  E  T  L  I  M  A  E  F  G  K  L  D  L  I  R  L  R  H  L  I  I  R  S  F  *  M  Q  S  N  *  L  T  *  F  Q  R  P  K  M  S  C  S  L  M  R  *  T  G  L  L  M  T  R :   M  H  Y  M  K  G  *  D  R  G  S  V  R  R  S  L  I  S  L  V  R  R  S  R  R  W  *  T  T  S  S  P  A  L  K  N  M  S  R  Q  L  R  C  W  R  G  S  K  V  Y  *  M  K  K  L  K  C  L  F  *  R  C  G  G  C  L  Y  L  K  S  R  K  L  R  Q  V  W  L  *  G  P  N  P  N  F  S  C  V  L  T  C  N  L  K  A  Y  S  L  T  L  A  T  L  S  N  H  C  R  I  V  F  F  Q  A  *  K  *  Q  I  V  *  V  K  </first_frame>
            <second_frame>  S  Y  F  I  *  G  K  Q  S  *  *  P  R  *  E  Y  R  D  S  S  F  *  F  K  P  G :   *  R  S  C  T  K  W  D  *  *  R  I  R  A  C  S  Y  C  N  I  R  H  E  A  *  *  Q  C  P  Y  K  K  V  R  I  W  P  L  R  V  R  K  K  S  C  C  P  F  F  L  Q  C  G  *  G  *  G  Y  S  K  R  K  E  N  E  A  I  G  S  N  *  L  L  S  *  R  T  Y  G  P  T  F  H  L  C  S  I  A  D  Y  G  C  R  I  C  K  A  N  F  K  C  Q  C  *  R  R  E  A  *  Y  R  E  G  E  T  Q  K  N  S  *  Q  I  Q  P  E  G  S  G  Q  A  *  R  G  D  *  P  N  Q  G  *  R  *  K  P  *  S  W  Q  S  S  G  N  *  T  *  *  G  *  D  T  *  *  S  E  A  F  R  C  K  A  I  D  *  H  D  S  K  D  Q  R  *  V  V  L  L  *  D  K  L  G  Y  L  *  Q   : E  C  I  T  *  K  D  E  T  V  D  Q  *  E  D  H  *  F  P  W  *  G  G  A  D  A  G  R  L  H  R  L  Q  H  S  R  T  C  Q  G  N  *  D  A  G  E  A  P  K  Y  I  R  *  R  S  *  N  V  C  S  E  D  V  E  D  A  Y  I  *  N  Q  E  S  *  D  R  S  G  F  K  A  Q  I  L  I  S  V  V  F  S  P  V  T  *  K  H  I  H  *  L  L  L  L  Y  Q  I  I  V  E  L  F  S  F  K  L  K  N  D  K  *  F  R  S  K </second_frame>
            <third_frame>   V  I  S  Y  E  E  N  N  L  D  S  Q  D  K  N  I  E  T  A  H  F  N  L  S  Q   : G  E  G  V  A  Q  N  G  T  D  E  E  S  V  R  A  V  T  A  T  S  D  M  R  H  N  S  N  A  P  T  K  R  L  E  F  G  L  S  G  S  G  K  R  A  A  V  P  S  F  F  N  A  D  E  D  E  D  T  Q  K  E  K  K  M  R  P  L  V  P  I  D  Y  S  A  D  E  H  M  V  Q  P  S  I  S  V  A  S  P  T  M  A  A  E  F  A  K  R  I  S  N  V  N  A  K  E  E  R  P  D  I  E  K  E  R  H  R  R  T  H  D  R  S  S  Q  R  D  R  D  R  H  D  E  E  T  N  R  T  R  D  D  G  R  N  L  D  H  G  R  V  R  E  T  R  P  D  K  V  K  T  P  D  N  Q  K  L  L  D  A  K  Q  L  I  D  M  I  P  K  T  K  D  E  L  F  S  Y  E  I  N  W  A  T  Y  D  K  :  N  A  L  H  E  R  M  R  P  W  I  S  K  K  I  T  D  F  L  G  E  E  E  P  T  L  V  D  Y  I  V  S  S  T  Q  E  H  V  K  A  T  E  M  L  E  R  L  Q  S  I  L  D  E  E  A  E  M  F  V  L  K  M  W  R  M  L  I  F  E  I  K  K  V  E  T  G  L  A  L  R  P  K  S  *  F  Q  L  C  S  H  L  *  L  E  S  I  F  I  N  S  C  Y  S  I  K  S  L  *  N  C  F  L  S  S  L  K  M  T  N  S  L  G  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92980" stop="93055"/>
                    <exon start="93146" stop="93729"/>
                    <exon start="94207" stop="94458"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>909</number_coding_nucleotides>
                  <number_encoded_amino_acids>303</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VISYEENNLDSQDKNIETAHFNLSQGEGVAQNGTDEESVRAVTATSDMRHNSNAPTKRLEFGLSGSGKRAAVPSFFNADEDEDTQKEKKMRPLVPIDYSADEHMVQPSISVASPTMAAEFAKRISNVNAKEERPDIEKERHRRTHDRSSQRDRDRHDEETNRTRDDGRNLDHGRVRETRPDKVKTPDNQKLLDAKQLIDMIPKTKDELFSYEINWATYDKNALHERMRPWISKKITDFLGEEEPTLVDYIVSSTQEHVKATEMLERLQSILDEEAEMFVLKMWRMLIFEIKKVETGLALRPKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="101776" PGL_stop="97837"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101776" e_stop="101658"/>
            <exon e_start="100317" e_stop="100280"/>
            <exon e_start="100182" e_stop="100160"/>
            <exon e_start="99228" e_stop="99122"/>
            <exon e_start="99051" e_stop="99000"/>
            <exon e_start="98925" e_stop="98841"/>
            <exon e_start="98389" e_stop="98299"/>
            <exon e_start="97984" e_stop="97949"/>
            <exon e_start="97843" e_stop="97837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.830" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.539" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.760" acc_prob="0.928" e_score="0.972"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101776" e_stop="101658" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.978">
            <gDNA_intron_boundary i_start="101657" i_stop="100318" i_length="1340"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100317" e_stop="100280" e_length="38"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="100279" i_stop="100183" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100182" e_stop="100160" e_length="23"/>
          </exon>
          <intron i_serial="3" don_prob="0.888" acc_prob="0.948">
            <gDNA_intron_boundary i_start="100159" i_stop="99229" i_length="931"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="99228" e_stop="99122" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.830" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99121" i_stop="99052" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="99051" e_stop="99000" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.803" acc_prob="0.539">
            <gDNA_intron_boundary i_start="98999" i_stop="98926" i_length="74"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="98925" e_stop="98841" e_length="85"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="98840" i_stop="98390" i_length="451"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="98389" e_stop="98299" e_length="91"/>
          </exon>
          <intron i_serial="7" don_prob="0.975" acc_prob="0.895">
            <gDNA_intron_boundary i_start="98298" i_stop="97985" i_length="314"/>
          </intron>
          <exon e_serial="8" e_score="0.972">
            <gDNA_exon_boundary e_start="97984" e_stop="97949" e_length="36"/>
          </exon>
          <intron i_serial="8" don_prob="0.760" acc_prob="0.928">
            <gDNA_intron_boundary i_start="97948" i_stop="97844" i_length="105"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="97843" e_stop="97837" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101776" stop="101658"/>
              <exon start="100317" stop="100280"/>
              <exon start="100182" stop="100160"/>
              <exon start="99228" stop="99122"/>
              <exon start="99051" stop="99000"/>
              <exon start="98925" stop="98841"/>
              <exon start="98389" stop="98299"/>
              <exon start="97984" stop="97949"/>
              <exon start="97843" stop="97837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGATTGTAGCAACAGCAAACTCTTACCAATGTGCGACTCCGGCGAGGCTCCGTTCGACACACGGCGGTACTATAAGCATATTCATGATAATGTTCATGGCAACATCTATCTCGATAAG : CAAGCTCTGAATTTCATCGACACTGAACAGTTTCAGAG : GCTTCGTGAATTGAAGCAGCTAG : GTCTTGGATACATGGTTTATCCTGGGGCTGTGCACTCTCGGTTTGAGCATTCCCTAGGGGTCTATTGGCTGGCCAGTGACGCTGTACATAGACTTAAGACCTATCAA : GGACAGGAGCTTGGTATTGAATCTTTTGATGTACAGACCGTGAAACTTGCTG : GATTACTACATGATGTGGGTCATGGGCCATTCAGTCACTTGTTTGAGCGTGAAATTCTTCCTCGGGTTCGCAGCGGCATTAAATG : GTCCCATGAGGATATGTCTTTGAAGATGATAGACTACATTGTTGATGAGAATAGCATTGATATTGATTCTGGCACTTTGAAGAAAGTAAAG : GAAATGATAGTTGCTTCTGAGGCAGGTAAATCAGTG : AGCTCAA</gDNA_template>
            <first_frame> E  I  V  A  T  A  N  S  Y  Q  C  A  T  P  A  R  L  R  S  T  H  G  G  T  I  S  I  F  M  I  M  F  M  A  T  S  I  S  I  S :   K  L  *  I  S  S  T  L  N  S  F  R   : G  F  V  N  *  S  S  *  :  V  L  D  T  W  F  I  L  G  L  C  T  L  G  L  S  I  P  *  G  S  I  G  W  P  V  T  L  Y  I  D  L  R  P  I  K :   D  R  S  L  V  L  N  L  L  M  Y  R  P  *  N  L  L  :  D  Y  Y  M  M  W  V  M  G  H  S  V  T  C  L  S  V  K  F  F  L  G  F  A  A  A  L  N   : G  P  M  R  I  C  L  *  R  *  *  T  T  L  L  M  R  I  A  L  I  L  I  L  A  L  *  R  K  *  R :   K  *  *  L  L  L  R  Q  V  N  Q  * :   A  Q </first_frame>
            <second_frame>  R  L  *  Q  Q  Q  T  L  T  N  V  R  L  R  R  G  S  V  R  H  T  A  V  L  *  A  Y  S  *  *  C  S  W  Q  H  L  S  R  *   : A  S  S  E  F  H  R  H  *  T  V  S  E  :  A  S  *  I  E  A  A  R :   S  W  I  H  G  L  S  W  G  C  A  L  S  V  *  A  F  P  R  G  L  L  A  G  Q  *  R  C  T  *  T  *  D  L  S   : R  T  G  A  W  Y  *  I  F  *  C  T  D  R  E  T  C  W :   I  T  T  *  C  G  S  W  A  I  Q  S  L  V  *  A  *  N  S  S  S  G  S  Q  R  H  *  M  :  V  P  *  G  Y  V  F  E  D  D  R  L  H  C  *  *  E  *  H  *  Y  *  F  W  H  F  E  E  S  K   : G  N  D  S  C  F  *  G  R  *  I  S   : E  L   </second_frame>
            <third_frame>   D  C  S  N  S  K  L  L  P  M  C  D  S  G  E  A  P  F  D  T  R  R  Y  Y  K  H  I  H  D  N  V  H  G  N  I  Y  L  D  K  :  Q  A  L  N  F  I  D  T  E  Q  F  Q  R :   L  R  E  L  K  Q  L   : G  L  G  Y  M  V  Y  P  G  A  V  H  S  R  F  E  H  S  L  G  V  Y  W  L  A  S  D  A  V  H  R  L  K  T  Y  Q  :  G  Q  E  L  G  I  E  S  F  D  V  Q  T  V  K  L  A   : G  L  L  H  D  V  G  H  G  P  F  S  H  L  F  E  R  E  I  L  P  R  V  R  S  G  I  K  W :   S  H  E  D  M  S  L  K  M  I  D  Y  I  V  D  E  N  S  I  D  I  D  S  G  T  L  K  K  V  K  :  E  M  I  V  A  S  E  A  G  K  S  V  :  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101774" stop="101658"/>
                    <exon start="100317" stop="100280"/>
                    <exon start="100182" stop="100160"/>
                    <exon start="99228" stop="99122"/>
                    <exon start="99051" stop="99000"/>
                    <exon start="98925" stop="98841"/>
                    <exon start="98389" stop="98299"/>
                    <exon start="97984" stop="97949"/>
                    <exon start="97843" stop="97838"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DCSNSKLLPMCDSGEAPFDTRRYYKHIHDNVHGNIYLDKQALNFIDTEQFQRLRELKQLGLGYMVYPGAVHSRFEHSLGVYWLASDAVHRLKTYQGQELGIESFDVQTVKLAGLLHDVGHGPFSHLFEREILPRVRSGIKWSHEDMSLKMIDYIVDENSIDIDSGTLKKVKEMIVASEAGKSVSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="108848" PGL_stop="103170"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108848" e_stop="108604"/>
            <exon e_start="108522" e_stop="108446"/>
            <exon e_start="107403" e_stop="107301"/>
            <exon e_start="107111" e_stop="107014"/>
            <exon e_start="106921" e_stop="106791"/>
            <exon e_start="106693" e_stop="106585"/>
            <exon e_start="106151" e_stop="105960"/>
            <exon e_start="105871" e_stop="105735"/>
            <exon e_start="103738" e_stop="103170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.821" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.839" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.875" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.726" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.428" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108848" e_stop="108604" e_length="245"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="108603" i_stop="108523" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108522" e_stop="108446" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.821">
            <gDNA_intron_boundary i_start="108445" i_stop="107404" i_length="1042"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107403" e_stop="107301" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.839">
            <gDNA_intron_boundary i_start="107300" i_stop="107112" i_length="189"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="107111" e_stop="107014" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.875">
            <gDNA_intron_boundary i_start="107013" i_stop="106922" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="106921" e_stop="106791" e_length="131"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.942">
            <gDNA_intron_boundary i_start="106790" i_stop="106694" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="106693" e_stop="106585" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.726" acc_prob="0.980">
            <gDNA_intron_boundary i_start="106584" i_stop="106152" i_length="433"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="106151" e_stop="105960" e_length="192"/>
          </exon>
          <intron i_serial="7" don_prob="0.428" acc_prob="0.983">
            <gDNA_intron_boundary i_start="105959" i_stop="105872" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="105871" e_stop="105735" e_length="137"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="105734" i_stop="103739" i_length="1996"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="103738" e_stop="103170" e_length="569"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108848" stop="108604"/>
              <exon start="108522" stop="108446"/>
              <exon start="107403" stop="107301"/>
              <exon start="107111" stop="107014"/>
              <exon start="106921" stop="106791"/>
              <exon start="106693" stop="106585"/>
              <exon start="106151" stop="106097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108830" stop="108604"/>
              <exon start="108522" stop="108446"/>
              <exon start="107403" stop="107301"/>
              <exon start="107111" stop="107073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107379" stop="107301"/>
              <exon start="107111" stop="107014"/>
              <exon start="106921" stop="106791"/>
              <exon start="106693" stop="106585"/>
              <exon start="106151" stop="105960"/>
              <exon start="105871" stop="105828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107379" stop="107301"/>
              <exon start="107111" stop="107014"/>
              <exon start="106921" stop="106791"/>
              <exon start="106693" stop="106585"/>
              <exon start="106151" stop="106071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106008" stop="105960"/>
              <exon start="105871" stop="105735"/>
              <exon start="103738" stop="103212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103586" stop="103170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103585" stop="103170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222297" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGACCGTTTGGTGTGTGTTTGAGGATGAGGCGAATTCGTTTCTCCGGCGGCAGCAGCAGCAACTGTGCTTTGCTTGGAACAACTTTTCCCTTCTCAAATTACACAAATTTTCCATTTAAAACCAAATCTTTTCTAAAGCTGCTTCCTTCAAGAACATCTCTTATCTTCACCACTCCTCATTATCGTTTAGTTACAGCAGCTCAACATTCTTCTACACCTCAAACCAACCTTTCTGTTGATTCTG : GAGGTAGTGGCCGAAATGGGTATCCATTGAAGGATTCAAAAGTGGTTTTGAAAGGGATGAGATATACTGATCTTGAG : AAATGGGTTCAGTCATATGGTTATAGGCCTGCTCAGGCTCTGATGTTATGGAAACGTCTGTATGGGGATAATATTTGGGCTCAATGCAGTGAGGAATTAGAAG : GTTTGAATAAGGATTTCAGGAAAATGTTGGGTGAACATGCTGAATTTAAGACGTTAAACTTGAAAGATATTCTGACAGCGTCTGATGGAACTAAAAAG : ATGTTATTCAAGTTGGAAGATGGTCTGGTAATAGAAACTGTTCTGATACCTTGTGAGCGGGGCAGGAACACTGTCTGTATATCTAGTCAAGTAGGTTGTGCCATGAATTGCCAGTTTTGCTATACCGGCAG : AATGGGTCTGAAGAGAAACTTATCCACTTCTGAGATAGTTGAGCAGGCTGTTTTAGCTCGACGCTTGTTATCCAGTGAAGTTGGACCAATTAGCAACGTTGTGTTTATG : GGAATGGGAGAACCGCTTCACAACATTGAGAATGTCTTGAAAGCTGCAGACATATTGGTAGATGAACAAGGGCTTCATTTTAGTCCTCGAAAGGTCACCGTTTCTACTAGTGGGCTTGTGCCCCAGCTTAAGCGGTTTCTTCGCGAGTCCAATTGTGCTTTGGCAGTCAGTTTGAATGCTACAACTGATGAG : GTCAGAAGTTGGATCATGCCAATTAACCGCAAATTTAACTTGAACTTGCTTCTTGGAACACTAAGAGAGGAGCTTCAATCAAAACATAAATACAAAGTTCTGTTCGAGTATGTAATGCTTGCCGGAGTTAATGATAG : TGTTGAGGATGCAAAGAGACTAATCGATCTAGTCCAGGGCATTCCATGCAAGATTAACCTGATCACTTTTAACCCTCATTCTGGATCCTTCTTCAAACCAACTACAAGAGAGAAGATAATCGAGTTCAGAGACATTCTTGCTGAAGCAGGATGTGTGGTGCTTTTTCGATGGAGTAGAGGAGATGATCAAATGGCTGCCTGTGGTCAGTTAGGTAAACCAGGTGAAATCCAAGCTCCCGTGCTTCGCGTGCCTTCCCAATTTCAAGCAGTACTGGAAGCTGCCGCGTGATTTCGTGTGCTCTTTTTTCAAGCATGTTCATCCTGGTTTTGTCCAAAATGTCTCACAGTTTCAAACTTCAAAGTTGTATGCTCATGAATCAATCACTGATCTTGTTCAGGTTAGATAGTTTATGCAGTACTTTTTAAGATTTCTTTCTTCTTCAACTCAGATCTTCATTAGGCGTCCTGAGAATTTGGCCATGTTTCATTATGAAATTCGGAAAAAAAGTGAAAAATTTTCATTGTCAATCGCCTCCTCAACACGTTTGTCAATTCACCATATTATCGTT</gDNA_template>
            <first_frame> K  T  V  W  C  V  F  E  D  E  A  N  S  F  L  R  R  Q  Q  Q  Q  L  C  F  A  W  N  N  F  S  L  L  K  L  H  K  F  S  I  *  N  Q  I  F  S  K  A  A  S  F  K  N  I  S  Y  L  H  H  S  S  L  S  F  S  Y  S  S  S  T  F  F  Y  T  S  N  Q  P  F  C  *  F  W :   R  *  W  P  K  W  V  S  I  E  G  F  K  S  G  F  E  R  D  E  I  Y  *  S  *   : E  M  G  S  V  I  W  L  *  A  C  S  G  S  D  V  M  E  T  S  V  W  G  *  Y  L  G  S  M  Q  *  G  I  R  R :   F  E  *  G  F  Q  E  N  V  G  *  T  C  *  I  *  D  V  K  L  E  R  Y  S  D  S  V  *  W  N  *  K   : D  V  I  Q  V  G  R  W  S  G  N  R  N  C  S  D  T  L  *  A  G  Q  E  H  C  L  Y  I  *  S  S  R  L  C  H  E  L  P  V  L  L  Y  R  Q  :  N  G  S  E  E  K  L  I  H  F  *  D  S  *  A  G  C  F  S  S  T  L  V  I  Q  *  S  W  T  N  *  Q  R  C  V  Y   : G  N  G  R  T  A  S  Q  H  *  E  C  L  E  S  C  R  H  I  G  R  *  T  R  A  S  F  *  S  S  K  G  H  R  F  Y  *  W  A  C  A  P  A  *  A  V  S  S  R  V  Q  L  C  F  G  S  Q  F  E  C  Y  N  *  *   : G  Q  K  L  D  H  A  N  *  P  Q  I  *  L  E  L  A  S  W  N  T  K  R  G  A  S  I  K  T  *  I  Q  S  S  V  R  V  C  N  A  C  R  S  *  *  *  :  C  *  G  C  K  E  T  N  R  S  S  P  G  H  S  M  Q  D  *  P  D  H  F  *  P  S  F  W  I  L  L  Q  T  N  Y  K  R  E  D  N  R  V  Q  R  H  S  C  *  S  R  M  C  G  A  F  S  M  E  *  R  R  *  S  N  G  C  L  W  S  V  R  *  T  R  *  N  P  S  S  R  A  S  R  A  F  P  I  S  S  S  T  G  S  C  R  V  I  S  C  A  L  F  S  S  M  F  I  L  V  L  S  K  M  S  H  S  F  K  L  Q  S  C  M  L  M  N  Q  S  L  I  L  F  R  L  D  S  L  C  S  T  F  *  D  F  F  L  L  Q  L  R  S  S  L  G  V  L  R  I  W  P  C  F  I  M  K  F  G  K  K  V  K  N  F  H  C  Q  S  P  P  Q  H  V  C  Q  F  T  I  L  S   </first_frame>
            <second_frame>  R  P  F  G  V  C  L  R  M  R  R  I  R  F  S  G  G  S  S  S  N  C  A  L  L  G  T  T  F  P  F  S  N  Y  T  N  F  P  F  K  T  K  S  F  L  K  L  L  P  S  R  T  S  L  I  F  T  T  P  H  Y  R  L  V  T  A  A  Q  H  S  S  T  P  Q  T  N  L  S  V  D  S   : G  G  S  G  R  N  G  Y  P  L  K  D  S  K  V  V  L  K  G  M  R  Y  T  D  L  E  :  K  W  V  Q  S  Y  G  Y  R  P  A  Q  A  L  M  L  W  K  R  L  Y  G  D  N  I  W  A  Q  C  S  E  E  L  E   : G  L  N  K  D  F  R  K  M  L  G  E  H  A  E  F  K  T  L  N  L  K  D  I  L  T  A  S  D  G  T  K  K  :  M  L  F  K  L  E  D  G  L  V  I  E  T  V  L  I  P  C  E  R  G  R  N  T  V  C  I  S  S  Q  V  G  C  A  M  N  C  Q  F  C  Y  T  G  R :   M  G  L  K  R  N  L  S  T  S  E  I  V  E  Q  A  V  L  A  R  R  L  L  S  S  E  V  G  P  I  S  N  V  V  F  M  :  G  M  G  E  P  L  H  N  I  E  N  V  L  K  A  A  D  I  L  V  D  E  Q  G  L  H  F  S  P  R  K  V  T  V  S  T  S  G  L  V  P  Q  L  K  R  F  L  R  E  S  N  C  A  L  A  V  S  L  N  A  T  T  D  E  :  V  R  S  W  I  M  P  I  N  R  K  F  N  L  N  L  L  L  G  T  L  R  E  E  L  Q  S  K  H  K  Y  K  V  L  F  E  Y  V  M  L  A  G  V  N  D  S :   V  E  D  A  K  R  L  I  D  L  V  Q  G  I  P  C  K  I  N  L  I  T  F  N  P  H  S  G  S  F  F  K  P  T  T  R  E  K  I  I  E  F  R  D  I  L  A  E  A  G  C  V  V  L  F  R  W  S  R  G  D  D  Q  M  A  A  C  G  Q  L  G  K  P  G  E  I  Q  A  P  V  L  R  V  P  S  Q  F  Q  A  V  L  E  A  A  A  *  F  R  V  L  F  F  Q  A  C  S  S  W  F  C  P  K  C  L  T  V  S  N  F  K  V  V  C  S  *  I  N  H  *  S  C  S  G  *  I  V  Y  A  V  L  F  K  I  S  F  F  F  N  S  D  L  H  *  A  S  *  E  F  G  H  V  S  L  *  N  S  E  K  K  *  K  I  F  I  V  N  R  L  L  N  T  F  V  N  S  P  Y  Y  R  </second_frame>
            <third_frame>   D  R  L  V  C  V  *  G  *  G  E  F  V  S  P  A  A  A  A  A  T  V  L  C  L  E  Q  L  F  P  S  Q  I  T  Q  I  F  H  L  K  P  N  L  F  *  S  C  F  L  Q  E  H  L  L  S  S  P  L  L  I  I  V  *  L  Q  Q  L  N  I  L  L  H  L  K  P  T  F  L  L  I  L  :  E  V  V  A  E  M  G  I  H  *  R  I  Q  K  W  F  *  K  G  *  D  I  L  I  L  R :   N  G  F  S  H  M  V  I  G  L  L  R  L  *  C  Y  G  N  V  C  M  G  I  I  F  G  L  N  A  V  R  N  *  K  :  V  *  I  R  I  S  G  K  C  W  V  N  M  L  N  L  R  R  *  T  *  K  I  F  *  Q  R  L  M  E  L  K  R :   C  Y  S  S  W  K  M  V  W  *  *  K  L  F  *  Y  L  V  S  G  A  G  T  L  S  V  Y  L  V  K  *  V  V  P  *  I  A  S  F  A  I  P  A   : E  W  V  *  R  E  T  Y  P  L  L  R  *  L  S  R  L  F  *  L  D  A  C  Y  P  V  K  L  D  Q  L  A  T  L  C  L  W :   E  W  E  N  R  F  T  T  L  R  M  S  *  K  L  Q  T  Y  W  *  M  N  K  G  F  I  L  V  L  E  R  S  P  F  L  L  V  G  L  C  P  S  L  S  G  F  F  A  S  P  I  V  L  W  Q  S  V  *  M  L  Q  L  M  R :   S  E  V  G  S  C  Q  L  T  A  N  L  T  *  T  C  F  L  E  H  *  E  R  S  F  N  Q  N  I  N  T  K  F  C  S  S  M  *  C  L  P  E  L  M  I   : V  L  R  M  Q  R  D  *  S  I  *  S  R  A  F  H  A  R  L  T  *  S  L  L  T  L  I  L  D  P  S  S  N  Q  L  Q  E  R  R  *  S  S  S  E  T  F  L  L  K  Q  D  V  W  C  F  F  D  G  V  E  E  M  I  K  W  L  P  V  V  S  *  V  N  Q  V  K  S  K  L  P  C  F  A  C  L  P  N  F  K  Q  Y  W  K  L  P  R  D  F  V  C  S  F  F  K  H  V  H  P  G  F  V  Q  N  V  S  Q  F  Q  T  S  K  L  Y  A  H  E  S  I  T  D  L  V  Q  V  R  *  F  M  Q  Y  F  L  R  F  L  S  S  S  T  Q  I  F  I  R  R  P  E  N  L  A  M  F  H  Y  E  I  R  K  K  S  E  K  F  S  L  S  I  A  S  S  T  R  L  S  I  H  H  I  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108847" stop="108604"/>
                    <exon start="108522" stop="108446"/>
                    <exon start="107403" stop="107301"/>
                    <exon start="107111" stop="107014"/>
                    <exon start="106921" stop="106791"/>
                    <exon start="106693" stop="106585"/>
                    <exon start="106151" stop="105960"/>
                    <exon start="105871" stop="105735"/>
                    <exon start="103738" stop="103450"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1377</number_coding_nucleotides>
                  <number_encoded_amino_acids>459</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPFGVCLRMRRIRFSGGSSSNCALLGTTFPFSNYTNFPFKTKSFLKLLPSRTSLIFTTPHYRLVTAAQHSSTPQTNLSVDSGGSGRNGYPLKDSKVVLKGMRYTDLEKWVQSYGYRPAQALMLWKRLYGDNIWAQCSEELEGLNKDFRKMLGEHAEFKTLNLKDILTASDGTKKMLFKLEDGLVIETVLIPCERGRNTVCISSQVGCAMNCQFCYTGRMGLKRNLSTSEIVEQAVLARRLLSSEVGPISNVVFMGMGEPLHNIENVLKAADILVDEQGLHFSPRKVTVSTSGLVPQLKRFLRESNCALAVSLNATTDEVRSWIMPINRKFNLNLLLGTLREELQSKHKYKVLFEYVMLAGVNDSVEDAKRLIDLVQGIPCKINLITFNPHSGSFFKPTTREKIIEFRDILAEAGCVVLFRWSRGDDQMAACGQLGKPGEIQAPVLRVPSQFQAVLEAAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="108829" e_stop="108604"/>
            <exon e_start="108522" e_stop="108446"/>
            <exon e_start="107403" e_stop="107316"/>
            <exon e_start="107111" e_stop="107014"/>
            <exon e_start="106921" e_stop="106791"/>
            <exon e_start="106693" e_stop="106585"/>
            <exon e_start="106151" e_stop="106047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.987"/>
          <exon-intron don_prob="0.978" acc_prob="0.821" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.839" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.875" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.726" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="108829" e_stop="108604" e_length="226"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="108603" i_stop="108523" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108522" e_stop="108446" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.821">
            <gDNA_intron_boundary i_start="108445" i_stop="107404" i_length="1042"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107403" e_stop="107316" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.839">
            <gDNA_intron_boundary i_start="107315" i_stop="107112" i_length="204"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="107111" e_stop="107014" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.875">
            <gDNA_intron_boundary i_start="107013" i_stop="106922" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="106921" e_stop="106791" e_length="131"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.942">
            <gDNA_intron_boundary i_start="106790" i_stop="106694" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="106693" e_stop="106585" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.726" acc_prob="0.980">
            <gDNA_intron_boundary i_start="106584" i_stop="106152" i_length="433"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="106151" e_stop="106047" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108829" stop="108604"/>
              <exon start="108522" stop="108446"/>
              <exon start="107403" stop="107316"/>
              <exon start="107111" stop="107014"/>
              <exon start="106921" stop="106791"/>
              <exon start="106693" stop="106585"/>
              <exon start="106151" stop="106047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727795" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAGGATGAGGCGAATTCGTTTCTCCGGCGGCAGCAGCAGCAACTGTGCTTTGCTTGGAACAACTTTTCCCTTCTCAAATTACACAAATTTTCCATTTAAAACCAAATCTTTTCTAAAGCTGCTTCCTTCAAGAACATCTCTTATCTTCACCACTCCTCATTATCGTTTAGTTACAGCAGCTCAACATTCTTCTACACCTCAAACCAACCTTTCTGTTGATTCTG : GAGGTAGTGGCCGAAATGGGTATCCATTGAAGGATTCAAAAGTGGTTTTGAAAGGGATGAGATATACTGATCTTGAG : AAATGGGTTCAGTCATATGGTTATAGGCCTGCTCAGGCTCTGATGTTATGGAAACGTCTGTATGGGGATAATATTTGGGCTCAATGCA : GTTTGAATAAGGATTTCAGGAAAATGTTGGGTGAACATGCTGAATTTAAGACGTTAAACTTGAAAGATATTCTGACAGCGTCTGATGGAACTAAAAAG : ATGTTATTCAAGTTGGAAGATGGTCTGGTAATAGAAACTGTTCTGATACCTTGTGAGCGGGGCAGGAACACTGTCTGTATATCTAGTCAAGTAGGTTGTGCCATGAATTGCCAGTTTTGCTATACCGGCAG : AATGGGTCTGAAGAGAAACTTATCCACTTCTGAGATAGTTGAGCAGGCTGTTTTAGCTCGACGCTTGTTATCCAGTGAAGTTGGACCAATTAGCAACGTTGTGTTTATG : GGAATGGGAGAACCGCTTCACAACATTGAGAATGTCTTGAAAGCTGCAGACATATTGGTAGATGAACAAGGGCTTCATTTTAGTCCTCGAAAGGTCACCGTTTCT</gDNA_template>
            <first_frame> L  R  M  R  R  I  R  F  S  G  G  S  S  S  N  C  A  L  L  G  T  T  F  P  F  S  N  Y  T  N  F  P  F  K  T  K  S  F  L  K  L  L  P  S  R  T  S  L  I  F  T  T  P  H  Y  R  L  V  T  A  A  Q  H  S  S  T  P  Q  T  N  L  S  V  D  S   : G  G  S  G  R  N  G  Y  P  L  K  D  S  K  V  V  L  K  G  M  R  Y  T  D  L  E  :  K  W  V  Q  S  Y  G  Y  R  P  A  Q  A  L  M  L  W  K  R  L  Y  G  D  N  I  W  A  Q  C   : S  L  N  K  D  F  R  K  M  L  G  E  H  A  E  F  K  T  L  N  L  K  D  I  L  T  A  S  D  G  T  K  K  :  M  L  F  K  L  E  D  G  L  V  I  E  T  V  L  I  P  C  E  R  G  R  N  T  V  C  I  S  S  Q  V  G  C  A  M  N  C  Q  F  C  Y  T  G  R :   M  G  L  K  R  N  L  S  T  S  E  I  V  E  Q  A  V  L  A  R  R  L  L  S  S  E  V  G  P  I  S  N  V  V  F  M  :  G  M  G  E  P  L  H  N  I  E  N  V  L  K  A  A  D  I  L  V  D  E  Q  G  L  H  F  S  P  R  K  V  T  V  S </first_frame>
            <second_frame>  *  G  *  G  E  F  V  S  P  A  A  A  A  A  T  V  L  C  L  E  Q  L  F  P  S  Q  I  T  Q  I  F  H  L  K  P  N  L  F  *  S  C  F  L  Q  E  H  L  L  S  S  P  L  L  I  I  V  *  L  Q  Q  L  N  I  L  L  H  L  K  P  T  F  L  L  I  L  :  E  V  V  A  E  M  G  I  H  *  R  I  Q  K  W  F  *  K  G  *  D  I  L  I  L  R :   N  G  F  S  H  M  V  I  G  L  L  R  L  *  C  Y  G  N  V  C  M  G  I  I  F  G  L  N  A  :  V  *  I  R  I  S  G  K  C  W  V  N  M  L  N  L  R  R  *  T  *  K  I  F  *  Q  R  L  M  E  L  K  R :   C  Y  S  S  W  K  M  V  W  *  *  K  L  F  *  Y  L  V  S  G  A  G  T  L  S  V  Y  L  V  K  *  V  V  P  *  I  A  S  F  A  I  P  A   : E  W  V  *  R  E  T  Y  P  L  L  R  *  L  S  R  L  F  *  L  D  A  C  Y  P  V  K  L  D  Q  L  A  T  L  C  L  W :   E  W  E  N  R  F  T  T  L  R  M  S  *  K  L  Q  T  Y  W  *  M  N  K  G  F  I  L  V  L  E  R  S  P  F   </second_frame>
            <third_frame>   E  D  E  A  N  S  F  L  R  R  Q  Q  Q  Q  L  C  F  A  W  N  N  F  S  L  L  K  L  H  K  F  S  I  *  N  Q  I  F  S  K  A  A  S  F  K  N  I  S  Y  L  H  H  S  S  L  S  F  S  Y  S  S  S  T  F  F  Y  T  S  N  Q  P  F  C  *  F  W :   R  *  W  P  K  W  V  S  I  E  G  F  K  S  G  F  E  R  D  E  I  Y  *  S  *   : E  M  G  S  V  I  W  L  *  A  C  S  G  S  D  V  M  E  T  S  V  W  G  *  Y  L  G  S  M  Q :   F  E  *  G  F  Q  E  N  V  G  *  T  C  *  I  *  D  V  K  L  E  R  Y  S  D  S  V  *  W  N  *  K   : D  V  I  Q  V  G  R  W  S  G  N  R  N  C  S  D  T  L  *  A  G  Q  E  H  C  L  Y  I  *  S  S  R  L  C  H  E  L  P  V  L  L  Y  R  Q  :  N  G  S  E  E  K  L  I  H  F  *  D  S  *  A  G  C  F  S  S  T  L  V  I  Q  *  S  W  T  N  *  Q  R  C  V  Y   : G  N  G  R  T  A  S  Q  H  *  E  C  L  E  S  C  R  H  I  G  R  *  T  R  A  S  F  *  S  S  K  G  H  R  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108829" stop="108604"/>
                    <exon start="108522" stop="108446"/>
                    <exon start="107403" stop="107316"/>
                    <exon start="107111" stop="107014"/>
                    <exon start="106921" stop="106791"/>
                    <exon start="106693" stop="106585"/>
                    <exon start="106151" stop="106047"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRMRRIRFSGGSSSNCALLGTTFPFSNYTNFPFKTKSFLKLLPSRTSLIFTTPHYRLVTAAQHSSTPQTNLSVDSGGSGRNGYPLKDSKVVLKGMRYTDLEKWVQSYGYRPAQALMLWKRLYGDNIWAQCSLNKDFRKMLGEHAEFKTLNLKDILTASDGTKKMLFKLEDGLVIETVLIPCERGRNTVCISSQVGCAMNCQFCYTGRMGLKRNLSTSEIVEQAVLARRLLSSEVGPISNVVFMGMGEPLHNIENVLKAADILVDEQGLHFSPRKVTVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="112582" PGL_stop="111947"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112582" e_stop="111947"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112582" e_stop="111947" e_length="636"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112582" stop="112041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112537" stop="111947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317319" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATATCACTCTGAAATGGTCAATTTCTTCTTTGTTTTTAAGAGCTTTTGTTGACTCACTCCACTCAACTTTCTTGATTTGTTGAAAATTCTGAAAAAAAAGATCTTACTTTTCTGTAATTTCTTAATTTTCAAGAAGTGGGGTTGTTGAGGAATTTTATGTTTTGATATTGAATCACTTTATTCAGCTTTGTTGATTCGTTATTTTCTTGAAAATTCTGAAAAAAAAAAGGTGTTATCTTTTTATAATTTCTGAAATTTCAAGATTTGGGGTTGTTGAGGAATTTCAAGTATTAATCTTGACTCAATTTAATATCTAAAAAAGGTCTTAATTTCAAGATTATGGCAGCATTAGCACCTGGGATTTTGTTGAAGTTATTAAATGGGATGAAATCAGGGGTGAAACCTACAAGTGAACATAGGAGTTCACTTTTGCAGGTTACTGATATTGTTCCTGCAGATCTTGATGAGAAGAATTTATGGCCAAAGCATGGATTTTTCATCAAGGTATCGGATTCTTCGCATTCCATTTATGTAAGTCTTCCAGATGAGCAAGATGATTTGGTTTTAAGTAATAAAATGCAGCTAGGACAGTTCATTTATGTCGATAGATTAGAGCCCGGTTCGCCTGTTCC</gDNA_template>
            <first_frame> K  N  I  T  L  K  W  S  I  S  S  L  F  L  R  A  F  V  D  S  L  H  S  T  F  L  I  C  *  K  F  *  K  K  R  S  Y  F  S  V  I  S  *  F  S  R  S  G  V  V  E  E  F  Y  V  L  I  L  N  H  F  I  Q  L  C  *  F  V  I  F  L  K  I  L  K  K  K  R  C  Y  L  F  I  I  S  E  I  S  R  F  G  V  V  E  E  F  Q  V  L  I  L  T  Q  F  N  I  *  K  R  S  *  F  Q  D  Y  G  S  I  S  T  W  D  F  V  E  V  I  K  W  D  E  I  R  G  E  T  Y  K  *  T  *  E  F  T  F  A  G  Y  *  Y  C  S  C  R  S  *  *  E  E  F  M  A  K  A  W  I  F  H  Q  G  I  G  F  F  A  F  H  L  C  K  S  S  R  *  A  R  *  F  G  F  K  *  *  N  A  A  R  T  V  H  L  C  R  *  I  R  A  R  F  A  C  S </first_frame>
            <second_frame>  K  I  S  L  *  N  G  Q  F  L  L  C  F  *  E  L  L  L  T  H  S  T  Q  L  S  *  F  V  E  N  S  E  K  K  D  L  T  F  L  *  F  L  N  F  Q  E  V  G  L  L  R  N  F  M  F  *  Y  *  I  T  L  F  S  F  V  D  S  L  F  S  *  K  F  *  K  K  K  G  V  I  F  L  *  F  L  K  F  Q  D  L  G  L  L  R  N  F  K  Y  *  S  *  L  N  L  I  S  K  K  G  L  N  F  K  I  M  A  A  L  A  P  G  I  L  L  K  L  L  N  G  M  K  S  G  V  K  P  T  S  E  H  R  S  S  L  L  Q  V  T  D  I  V  P  A  D  L  D  E  K  N  L  W  P  K  H  G  F  F  I  K  V  S  D  S  S  H  S  I  Y  V  S  L  P  D  E  Q  D  D  L  V  L  S  N  K  M  Q  L  G  Q  F  I  Y  V  D  R  L  E  P  G  S  P  V   </second_frame>
            <third_frame>   K  Y  H  S  E  M  V  N  F  F  F  V  F  K  S  F  C  *  L  T  P  L  N  F  L  D  L  L  K  I  L  K  K  K  I  L  L  F  C  N  F  L  I  F  K  K  W  G  C  *  G  I  L  C  F  D  I  E  S  L  Y  S  A  L  L  I  R  Y  F  L  E  N  S  E  K  K  K  V  L  S  F  Y  N  F  *  N  F  K  I  W  G  C  *  G  I  S  S  I  N  L  D  S  I  *  Y  L  K  K  V  L  I  S  R  L  W  Q  H  *  H  L  G  F  C  *  S  Y  *  M  G  *  N  Q  G  *  N  L  Q  V  N  I  G  V  H  F  C  R  L  L  I  L  F  L  Q  I  L  M  R  R  I  Y  G  Q  S  M  D  F  S  S  R  Y  R  I  L  R  I  P  F  M  *  V  F  Q  M  S  K  M  I  W  F  *  V  I  K  C  S  *  D  S  S  F  M  S  I  D  *  S  P  V  R  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112278" stop="111949"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNLISKKGLNFKIMAALAPGILLKLLNGMKSGVKPTSEHRSSLLQVTDIVPADLDEKNLWPKHGFFIKVSDSSHSIYVSLPDEQDDLVLSNKMQLGQFIYVDRLEPGSPV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="118194" PGL_stop="117573"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118194" e_stop="117573"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="118194" e_stop="117573" e_length="622"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118194" stop="117573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118118" stop="117573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393316" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTGCGTCAGCTCAATTGAGGACATGATTGACTTTTCCACCTCGGTGTTAGGTCAAAACGTTGTCCTACGAACAACTGAGAATATAAAAGGGTCAAAGGGAGATATTTTAATTGGATCGGTGAAAAGAACCAACGATGGGAAAGTAACGAAATCGGTATCTTGTCATCAGAGTTTGTTTCCGTATTTGGTTTATTATTGTCATTCGGTTCCAAAGGTTCGGGTTTATGAAGCGGATATATTGGATCCGAATTCAAAGGCTAAGATTAATCATGGTGTTGCCATTTGTCATGTGGACACGTCAGCATGGGGAGCGAATCATGGAGCTTTTACGGCACTCGGGTCGGGACCCGGAAAGATTGAGGTTTGTCATTGGATCTTTGAAAATGATATGAATTGGGCAGTTGCTGATTAAAATGGATCTTCCAACTTTCATATTCGGGTCGGATCAATTACGGTTCTTGTTCAAATTATCATTGTCCAATTTTAATGCATCTTGACCTCTTTTTGTTTTTTAATTATTTATTAGACTTATAATGAACTTACTGTAATTACTACGATGGTAATTTCAAAGGCCTATTTACTTATTGTAATATAATTACAGTAACGCAGAGTCAAATATT</gDNA_template>
            <first_frame> K  C  V  S  S  I  E  D  M  I  D  F  S  T  S  V  L  G  Q  N  V  V  L  R  T  T  E  N  I  K  G  S  K  G  D  I  L  I  G  S  V  K  R  T  N  D  G  K  V  T  K  S  V  S  C  H  Q  S  L  F  P  Y  L  V  Y  Y  C  H  S  V  P  K  V  R  V  Y  E  A  D  I  L  D  P  N  S  K  A  K  I  N  H  G  V  A  I  C  H  V  D  T  S  A  W  G  A  N  H  G  A  F  T  A  L  G  S  G  P  G  K  I  E  V  C  H  W  I  F  E  N  D  M  N  W  A  V  A  D  *  N  G  S  S  N  F  H  I  R  V  G  S  I  T  V  L  V  Q  I  I  I  V  Q  F  *  C  I  L  T  S  F  C  F  L  I  I  Y  *  T  Y  N  E  L  T  V  I  T  T  M  V  I  S  K  A  Y  L  L  I  V  I  *  L  Q  *  R  R  V  K  Y  </first_frame>
            <second_frame>  S  A  S  A  Q  L  R  T  *  L  T  F  P  P  R  C  *  V  K  T  L  S  Y  E  Q  L  R  I  *  K  G  Q  R  E  I  F  *  L  D  R  *  K  E  P  T  M  G  K  *  R  N  R  Y  L  V  I  R  V  C  F  R  I  W  F  I  I  V  I  R  F  Q  R  F  G  F  M  K  R  I  Y  W  I  R  I  Q  R  L  R  L  I  M  V  L  P  F  V  M  W  T  R  Q  H  G  E  R  I  M  E  L  L  R  H  S  G  R  D  P  E  R  L  R  F  V  I  G  S  L  K  M  I  *  I  G  Q  L  L  I  K  M  D  L  P  T  F  I  F  G  S  D  Q  L  R  F  L  F  K  L  S  L  S  N  F  N  A  S  *  P  L  F  V  F  *  L  F  I  R  L  I  M  N  L  L  *  L  L  R  W  *  F  Q  R  P  I  Y  L  L  *  Y  N  Y  S  N  A  E  S  N  I </second_frame>
            <third_frame>   V  R  Q  L  N  *  G  H  D  *  L  F  H  L  G  V  R  S  K  R  C  P  T  N  N  *  E  Y  K  R  V  K  G  R  Y  F  N  W  I  G  E  K  N  Q  R  W  E  S  N  E  I  G  I  L  S  S  E  F  V  S  V  F  G  L  L  L  S  F  G  S  K  G  S  G  L  *  S  G  Y  I  G  S  E  F  K  G  *  D  *  S  W  C  C  H  L  S  C  G  H  V  S  M  G  S  E  S  W  S  F  Y  G  T  R  V  G  T  R  K  D  *  G  L  S  L  D  L  *  K  *  Y  E  L  G  S  C  *  L  K  W  I  F  Q  L  S  Y  S  G  R  I  N  Y  G  S  C  S  N  Y  H  C  P  I  L  M  H  L  D  L  F  L  F  F  N  Y  L  L  D  L  *  *  T  Y  C  N  Y  Y  D  G  N  F  K  G  L  F  T  Y  C  N  I  I  T  V  T  Q  S  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118194" stop="117781"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KCVSSIEDMIDFSTSVLGQNVVLRTTENIKGSKGDILIGSVKRTNDGKVTKSVSCHQSLFPYLVYYCHSVPKVRVYEADILDPNSKAKINHGVAICHVDTSAWGANHGAFTALGSGPGKIEVCHWIFENDMNWAVAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="120704" PGL_stop="119043"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120704" e_stop="120610"/>
            <exon e_start="119671" e_stop="119167"/>
            <exon e_start="119099" e_stop="119043"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.309" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120704" e_stop="120610" e_length="95"/>
          </exon>
          <intron i_serial="1" don_prob="0.309" acc_prob="1.000">
            <gDNA_intron_boundary i_start="120609" i_stop="119672" i_length="938"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119671" e_stop="119167" e_length="505"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="119166" i_stop="119100" i_length="67"/>
          </intron>
          <exon e_serial="3" e_score="0.965">
            <gDNA_exon_boundary e_start="119099" e_stop="119043" e_length="57"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120704" stop="120610"/>
              <exon start="119671" stop="119167"/>
              <exon start="119099" stop="119043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120703" stop="120610"/>
              <exon start="119671" stop="119215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120703" stop="120610"/>
              <exon start="119671" stop="119342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120702" stop="120610"/>
              <exon start="119671" stop="119326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120685" stop="120610"/>
              <exon start="119671" stop="119276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248156" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAAACACAACATTCTCAAAAAAGAAATAATTAAAATCTTCACAAAGAAATGCATATAAACACTTTGCTTCTCTCTATTTTCCTACTTTTCAGT : GTGATTGTGGCCGGAAACAGAGAAAACTCCGGCGACTCTGTAAACCCTTTTACACCAAAAGCTTATTCAATTCGTTACTGGAACAAACGAATTTCAAATAAATTACCCAAACCATGGTTTCTTCTGAACAAAGCTTCACCATTAAATGCTGCACAATTTGCAAAATACTCAAAGCTAGCAACAGGGGATCAAGAATCTCTGTCAAATGAAATTCAATCATTTTGCTCCTCTGCAAATCTGCTCTGTTTTCCTGATATTTCAACAAGTTTAGATAAACATGGCCAAGATACCCAATTTTCTTCATATATGAGCAAAAATTTCACCAATTATGGCAATAAATTGCCTCGTGGATTTGATAGTTTCAAAAAATACGCCGAAAATGATAACCTCCCTGTTAATTCTTTCCGGCAATATAGCCGCGGTGGCGCTGGCCATGATGATATATTTTCTACTTACGCACCAAATGGCAATGTAATTGATCAAAGCTTCAACACTTATGGCACAG : GCCTTGCTGCTTTTGGCGTTGGCCAATTCAAAATCTACGGGGCCAACGTCAATGTAC</gDNA_template>
            <first_frame> H  K  H  N  I  L  K  K  E  I  I  K  I  F  T  K  K  C  I  *  T  L  C  F  S  L  F  S  Y  F  S  V :   *  L  W  P  E  T  E  K  T  P  A  T  L  *  T  L  L  H  Q  K  L  I  Q  F  V  T  G  T  N  E  F  Q  I  N  Y  P  N  H  G  F  F  *  T  K  L  H  H  *  M  L  H  N  L  Q  N  T  Q  S  *  Q  Q  G  I  K  N  L  C  Q  M  K  F  N  H  F  A  P  L  Q  I  C  S  V  F  L  I  F  Q  Q  V  *  I  N  M  A  K  I  P  N  F  L  H  I  *  A  K  I  S  P  I  M  A  I  N  C  L  V  D  L  I  V  S  K  N  T  P  K  M  I  T  S  L  L  I  L  S  G  N  I  A  A  V  A  L  A  M  M  I  Y  F  L  L  T  H  Q  M  A  M  *  L  I  K  A  S  T  L  M  A  Q  :  A  L  L  L  L  A  L  A  N  S  K  S  T  G  P  T  S  M  Y </first_frame>
            <second_frame>  T  N  T  T  F  S  K  K  K  *  L  K  S  S  Q  R  N  A  Y  K  H  F  A  S  L  Y  F  P  T  F  Q   : C  D  C  G  R  K  Q  R  K  L  R  R  L  C  K  P  F  Y  T  K  S  L  F  N  S  L  L  E  Q  T  N  F  K  *  I  T  Q  T  M  V  S  S  E  Q  S  F  T  I  K  C  C  T  I  C  K  I  L  K  A  S  N  R  G  S  R  I  S  V  K  *  N  S  I  I  L  L  L  C  K  S  A  L  F  S  *  Y  F  N  K  F  R  *  T  W  P  R  Y  P  I  F  F  I  Y  E  Q  K  F  H  Q  L  W  Q  *  I  A  S  W  I  *  *  F  Q  K  I  R  R  K  *  *  P  P  C  *  F  F  P  A  I  *  P  R  W  R  W  P  *  *  Y  I  F  Y  L  R  T  K  W  Q  C  N  *  S  K  L  Q  H  L  W  H  R :   P  C  C  F  W  R  W  P  I  Q  N  L  R  G  Q  R  Q  C   </second_frame>
            <third_frame>   Q  T  Q  H  S  Q  K  R  N  N  *  N  L  H  K  E  M  H  I  N  T  L  L  L  S  I  F  L  L  F  S  :  V  I  V  A  G  N  R  E  N  S  G  D  S  V  N  P  F  T  P  K  A  Y  S  I  R  Y  W  N  K  R  I  S  N  K  L  P  K  P  W  F  L  L  N  K  A  S  P  L  N  A  A  Q  F  A  K  Y  S  K  L  A  T  G  D  Q  E  S  L  S  N  E  I  Q  S  F  C  S  S  A  N  L  L  C  F  P  D  I  S  T  S  L  D  K  H  G  Q  D  T  Q  F  S  S  Y  M  S  K  N  F  T  N  Y  G  N  K  L  P  R  G  F  D  S  F  K  K  Y  A  E  N  D  N  L  P  V  N  S  F  R  Q  Y  S  R  G  G  A  G  H  D  D  I  F  S  T  Y  A  P  N  G  N  V  I  D  Q  S  F  N  T  Y  G  T   : G  L  A  A  F  G  V  G  Q  F  K  I  Y  G  A  N  V  N  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120669" stop="120610"/>
                    <exon start="119671" stop="119167"/>
                    <exon start="119099" stop="119044"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLHKEMHINTLLLSIFLLFSVIVAGNRENSGDSVNPFTPKAYSIRYWNKRISNKLPKPWFLLNKASPLNAAQFAKYSKLATGDQESLSNEIQSFCSSANLLCFPDISTSLDKHGQDTQFSSYMSKNFTNYGNKLPRGFDSFKKYAENDNLPVNSFRQYSRGGAGHDDIFSTYAPNGNVIDQSFNTYGTGLAAFGVGQFKIYGANVNV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="125801" PGL_stop="123349"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125801" e_stop="125684"/>
            <exon e_start="125438" e_stop="123349"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125801" e_stop="125684" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="125683" i_stop="125439" i_length="245"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125438" e_stop="123349" e_length="2090"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125801" stop="125684"/>
              <exon start="125438" stop="124807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125795" stop="125684"/>
              <exon start="125438" stop="124700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125793" stop="125684"/>
              <exon start="125438" stop="124703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125792" stop="125684"/>
              <exon start="125438" stop="124987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125792" stop="125684"/>
              <exon start="125438" stop="125075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125791" stop="125684"/>
              <exon start="125438" stop="124999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125789" stop="125684"/>
              <exon start="125438" stop="124887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125789" stop="125684"/>
              <exon start="125438" stop="125079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125786" stop="125684"/>
              <exon start="125438" stop="124789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125786" stop="125684"/>
              <exon start="125438" stop="124805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125786" stop="125684"/>
              <exon start="125438" stop="124810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125785" stop="125684"/>
              <exon start="125438" stop="123349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125784" stop="125684"/>
              <exon start="125438" stop="124791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125783" stop="125684"/>
              <exon start="125438" stop="124976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125783" stop="125684"/>
              <exon start="125438" stop="125077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125775" stop="125684"/>
              <exon start="125438" stop="124702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125771" stop="125684"/>
              <exon start="125438" stop="124808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125771" stop="125684"/>
              <exon start="125438" stop="124883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125771" stop="125684"/>
              <exon start="125438" stop="124962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125767" stop="125684"/>
              <exon start="125438" stop="125038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125754" stop="125684"/>
              <exon start="125438" stop="124974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125751" stop="125684"/>
              <exon start="125438" stop="125047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125747" stop="125684"/>
              <exon start="125438" stop="125092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125701" stop="125684"/>
              <exon start="125438" stop="124810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125418" stop="124628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125418" stop="124739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125418" stop="125046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125363" stop="124792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125341" stop="124633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125309" stop="124917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125272" stop="124866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125231" stop="124620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125197" stop="124901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125183" stop="124631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125124" stop="124524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125114" stop="124662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125054" stop="124485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125032" stop="124534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125032" stop="124568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125028" stop="124397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125027" stop="124392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125027" stop="124524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125017" stop="124453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124988" stop="124413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124927" stop="124342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124920" stop="124141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124906" stop="124127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124853" stop="124115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124811" stop="123928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124803" stop="124127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124734" stop="123860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124677" stop="124120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124632" stop="124098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124632" stop="124221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124614" stop="123802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124613" stop="124056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124551" stop="124000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124468" stop="123907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124453" stop="123727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124442" stop="123605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124427" stop="123605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124427" stop="123719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124423" stop="123604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124397" stop="123822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124392" stop="123741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124382" stop="123604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124379" stop="123722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124310" stop="123604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124278" stop="123911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124247" stop="123727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124229" stop="123708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124228" stop="123814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124037" stop="123475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124024" stop="123616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123822" stop="123372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735038" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCTACTCTTCACCTTCTCTCTCTTCATCTCTGTTTCACACCAAAGAAATGCACACTAAAATTCATCTTCCTCCCTGCATCTTACTTCTTCTTCTGTTCTCACTACCATCTTTCAAT : GTTGTTGTAGGTGGAGATGGTGAATCTGGTAACCCATTTACACCCAAAGGTTATCTGATTAGGTACTGGAAGAAACAAATCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCACCACACAGCTCCATACCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCAGATCTGTCACCAAGTCTTGAAAAACACAGTGGAGATATCCATTTTGCCACTTACAGTGACAAAAACTTTACCAATTATGGAACCAATGAACCTGGAATTGGAGTTAACACTTTCAAGAACTACTCTGAAGGAGAAAACATCCCTGTAAATTCTTTCAGGCGATATGGTAGAGGTTCTCCCCGTGACAATAAATTTGACAATTACGCCTCTGATGGCAATGTTATTGACCAAAGTTTCAATTCCTATAGCACAAGTACTGCTGGAGGTTCAGGCAAATTCACAAATTACGCGGCGAATGCCAATGACCCCAATCTGCATTTCACTTCCTATTCCGATCAAGGAACAGGAGGTGTACAGAAATTCACAATATACTCACAAGAAGCCAATGCTGGTGACCAGTATTTCAAAAGTTACGGCAAAAATGGGAATGGTGCTAATGGTGAATTCGTCAGCTATGGAAATGACACAAATGTTATCGGCTCAACATTTACAAATTATGGTCAGACAGCAAATGGGGGAGACCAAAAATTCACATCTTATGGTTTCAACGGCAATGTTCCTGAAAATCATTTCACCAACTATGGTGCTGGAGGTAATGGTCCATCTGAAACTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACATTCACTACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGCAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCCCAAGTTTTAGCATCGTTGATGGAGGTCAACGGTGGTAAAAAGGTGAATAACCGGTGGGTTGAGCCCGGAAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGTGATTGCTTCCAAATTACCATTTTCTACTTCAAAAATTGCTGAGCTGAAGAAAATCTTCCACGCCGGTGATGAGTCTCAGGTGGAGAAGATGATCGGCGATGCATTGAGTGAGTGTGAAAGAGCACCGAGCGCCGGTGAGACGAAACGATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGAAACGTCGTCGTTCGAACGACTGAGGATACAAAAGGATCAAATGGGAATATCATGATTGGATCAGTCAAAGGAATCAACGGTGGAAAAGTTACTAAATCAGTATCATGTCATCAAACGCTGTACCCTTACTTACTGTATTACTGTCATTCGGTTCCTAAAGTCCGGGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGTTAAGATCAATCATGGTGTCGCGATTTGCCACGTGGATACATCTTCATGGGGACCGAGTCACGGAGCGTTTGTCGCACTCGGGTCGGGACCCGGGAAAATAGAAGTTTGTCATTGGATCTTTGAGAATGATATGACTTGGGCAATTGCTGATTGAGAAAAAAAAAAGAAATGAAATAATATGCAAAATTTCTAATTCGGGTCGAACCGGGTGTGTTACAAGAAGAAGAAAAAAGGTACCACTGGTTTGACTTTTATAGTAATTATTATTATTATAGTCTTAATTTATATTTTGAGTAATTTTCGTGTAAGTTTCTCTTTGCCTTCATTAAGTATGAATGGCTATCAATTTACACTATTTGTTATGTAATCATTTTATTGTTGACTCATATTTGAGCAAGGTAATGTAGTTATTGCCAGATG</gDNA_template>
            <first_frame> I  L  L  F  T  F  S  L  F  I  S  V  S  H  Q  R  N  A  H  *  N  S  S  S  S  L  H  L  T  S  S  S  V  L  T  T  I  F  Q   : C  C  C  R  W  R  W  *  I  W  *  P  I  Y  T  Q  R  L  S  D  *  V  L  E  E  T  N  L  K  *  L  T  K  A  M  V  S  S  E  Q  G  I  S  I  E  C  C  T  I  C  N  L  H  *  T  C  C  *  S  K  C  T  H  H  T  A  P  Y  L  L  L  F  S  K  S  H  V  C  T  R  S  V  T  K  S  *  K  T  Q  W  R  Y  P  F  C  H  L  Q  *  Q  K  L  Y  Q  L  W  N  Q  *  T  W  N  W  S  *  H  F  Q  E  L  L  *  R  R  K  H  P  C  K  F  F  Q  A  I  W  *  R  F  S  P  *  Q  *  I  *  Q  L  R  L  *  W  Q  C  Y  *  P  K  F  Q  F  L  *  H  K  Y  C  W  R  F  R  Q  I  H  K  L  R  G  E  C  Q  *  P  Q  S  A  F  H  F  L  F  R  S  R  N  R  R  C  T  E  I  H  N  I  L  T  R  S  Q  C  W  *  P  V  F  Q  K  L  R  Q  K  W  E  W  C  *  W  *  I  R  Q  L  W  K  *  H  K  C  Y  R  L  N  I  Y  K  L  W  S  D  S  K  W  G  R  P  K  I  H  I  L  W  F  Q  R  Q  C  S  *  K  S  F  H  Q  L  W  C  W  R  *  W  S  I  *  N  F  *  *  L  Q  R  S  I  E  C  W  R  *  H  I  H  Y  L  C  *  G  C  K  W  R  *  S  E  F  H  Q  L  W  S  I  I  Q  *  R  Y  *  C  I  H  Y  L  R  Q  R  G  *  *  P  T  Y  Q  F  Q  N  L  R  S  *  Q  H  F  Q  R  L  C  Q  R  Y  C  Y  I  F  Q  L  P  Q  Q  N  F  P  S  F  S  I  V  D  G  G  Q  R  W  *  K  G  E  *  P  V  G  *  A  R  K  V  F  P  G  E  D  V  E  E  W  Y  N  H  A  Y  A  R  Y  K  G  *  D  A  *  K  V  L  F  A  P  G  D  C  F  Q  I  T  I  F  Y  F  K  N  C  *  A  E  E  N  L  P  R  R  *  *  V  S  G  G  E  D  D  R  R  C  I  E  *  V  *  K  S  T  E  R  R  *  D  E  T  M  C  *  F  S  *  R  Y  D  *  F  R  N  I  S  V  G  S  K  R  R  R  S  N  D  *  G  Y  K  R  I  K  W  E  Y  H  D  W  I  S  Q  R  N  Q  R  W  K  S  Y  *  I  S  I  M  S  S  N  A  V  P  L  L  T  V  L  L  S  F  G  S  *  S  P  G  L  R  S  G  Y  F  G  P  E  F  K  G  *  D  Q  S  W  C  R  D  L  P  R  G  Y  I  F  M  G  T  E  S  R  S  V  C  R  T  R  V  G  T  R  E  N  R  S  L  S  L  D  L  *  E  *  Y  D  L  G  N  C  *  L  R  K  K  K  E  M  K  *  Y  A  K  F  L  I  R  V  E  P  G  V  L  Q  E  E  E  K  R  Y  H  W  F  D  F  Y  S  N  Y  Y  Y  Y  S  L  N  L  Y  F  E  *  F  S  C  K  F  L  F  A  F  I  K  Y  E  W  L  S  I  Y  T  I  C  Y  V  I  I  L  L  L  T  H  I  *  A  R  *  C  S  Y  C  Q  M </first_frame>
            <second_frame>  F  Y  S  S  P  S  L  S  S  S  L  F  H  T  K  E  M  H  T  K  I  H  L  P  P  C  I  L  L  L  L  L  F  S  L  P  S  F  N  :  V  V  V  G  G  D  G  E  S  G  N  P  F  T  P  K  G  Y  L  I  R  Y  W  K  K  Q  I  S  N  D  L  P  K  P  W  F  L  L  N  K  A  S  P  L  N  A  A  Q  Y  A  T  Y  T  K  L  V  A  D  Q  N  A  L  T  T  Q  L  H  T  F  C  S  S  A  N  L  M  C  A  P  D  L  S  P  S  L  E  K  H  S  G  D  I  H  F  A  T  Y  S  D  K  N  F  T  N  Y  G  T  N  E  P  G  I  G  V  N  T  F  K  N  Y  S  E  G  E  N  I  P  V  N  S  F  R  R  Y  G  R  G  S  P  R  D  N  K  F  D  N  Y  A  S  D  G  N  V  I  D  Q  S  F  N  S  Y  S  T  S  T  A  G  G  S  G  K  F  T  N  Y  A  A  N  A  N  D  P  N  L  H  F  T  S  Y  S  D  Q  G  T  G  G  V  Q  K  F  T  I  Y  S  Q  E  A  N  A  G  D  Q  Y  F  K  S  Y  G  K  N  G  N  G  A  N  G  E  F  V  S  Y  G  N  D  T  N  V  I  G  S  T  F  T  N  Y  G  Q  T  A  N  G  G  D  Q  K  F  T  S  Y  G  F  N  G  N  V  P  E  N  H  F  T  N  Y  G  A  G  G  N  G  P  S  E  T  F  N  S  Y  R  D  Q  S  N  V  G  D  D  T  F  T  T  Y  V  K  D  A  N  G  G  E  A  N  F  T  N  Y  G  Q  S  F  N  E  G  T  D  V  F  T  T  Y  G  K  G  G  N  D  P  H  I  N  F  K  T  Y  G  V  N  N  T  F  K  D  Y  V  K  D  T  A  T  F  S  N  Y  H  N  K  T  S  Q  V  L  A  S  L  M  E  V  N  G  G  K  K  V  N  N  R  W  V  E  P  G  K  F  F  R  E  K  M  L  K  S  G  T  I  M  P  M  P  D  I  K  D  K  M  P  K  R  S  F  L  P  R  V  I  A  S  K  L  P  F  S  T  S  K  I  A  E  L  K  K  I  F  H  A  G  D  E  S  Q  V  E  K  M  I  G  D  A  L  S  E  C  E  R  A  P  S  A  G  E  T  K  R  C  V  N  S  A  E  D  M  I  D  F  A  T  S  V  L  G  R  N  V  V  V  R  T  T  E  D  T  K  G  S  N  G  N  I  M  I  G  S  V  K  G  I  N  G  G  K  V  T  K  S  V  S  C  H  Q  T  L  Y  P  Y  L  L  Y  Y  C  H  S  V  P  K  V  R  V  Y  E  A  D  I  L  D  P  N  S  K  V  K  I  N  H  G  V  A  I  C  H  V  D  T  S  S  W  G  P  S  H  G  A  F  V  A  L  G  S  G  P  G  K  I  E  V  C  H  W  I  F  E  N  D  M  T  W  A  I  A  D  *  E  K  K  K  K  *  N  N  M  Q  N  F  *  F  G  S  N  R  V  C  Y  K  K  K  K  K  G  T  T  G  L  T  F  I  V  I  I  I  I  I  V  L  I  Y  I  L  S  N  F  R  V  S  F  S  L  P  S  L  S  M  N  G  Y  Q  F  T  L  F  V  M  *  S  F  Y  C  *  L  I  F  E  Q  G  N  V  V  I  A  R   </second_frame>
            <third_frame>   S  T  L  H  L  L  S  L  H  L  C  F  T  P  K  K  C  T  L  K  F  I  F  L  P  A  S  Y  F  F  F  C  S  H  Y  H  L  S  M :   L  L  *  V  E  M  V  N  L  V  T  H  L  H  P  K  V  I  *  L  G  T  G  R  N  K  S  Q  M  T  Y  Q  S  H  G  F  F  *  T  R  H  L  H  *  M  L  H  N  M  Q  L  T  L  N  L  L  L  I  K  M  H  S  P  H  S  S  I  P  F  A  L  Q  Q  I  S  C  V  H  Q  I  C  H  Q  V  L  K  N  T  V  E  I  S  I  L  P  L  T  V  T  K  T  L  P  I  M  E  P  M  N  L  E  L  E  L  T  L  S  R  T  T  L  K  E  K  T  S  L  *  I  L  S  G  D  M  V  E  V  L  P  V  T  I  N  L  T  I  T  P  L  M  A  M  L  L  T  K  V  S  I  P  I  A  Q  V  L  L  E  V  Q  A  N  S  Q  I  T  R  R  M  P  M  T  P  I  C  I  S  L  P  I  P  I  K  E  Q  E  V  Y  R  N  S  Q  Y  T  H  K  K  P  M  L  V  T  S  I  S  K  V  T  A  K  M  G  M  V  L  M  V  N  S  S  A  M  E  M  T  Q  M  L  S  A  Q  H  L  Q  I  M  V  R  Q  Q  M  G  E  T  K  N  S  H  L  M  V  S  T  A  M  F  L  K  I  I  S  P  T  M  V  L  E  V  M  V  H  L  K  L  L  I  V  T  E  I  N  R  M  L  E  M  T  H  S  L  P  M  L  R  M  Q  M  A  V  K  R  I  S  P  T  M  V  N  H  S  M  K  V  L  M  Y  S  L  L  T  A  K  G  V  M  T  H  I  S  I  S  K  L  T  E  L  T  T  L  S  K  I  M  S  K  I  L  L  H  F  P  I  T  T  T  K  L  P  K  F  *  H  R  *  W  R  S  T  V  V  K  R  *  I  T  G  G  L  S  P  E  S  F  S  G  R  R  C  *  R  V  V  Q  S  C  L  C  Q  I  *  R  I  R  C  L  K  G  P  F  C  P  G  *  L  L  P  N  Y  H  F  L  L  Q  K  L  L  S  *  R  K  S  S  T  P  V  M  S  L  R  W  R  R  *  S  A  M  H  *  V  S  V  K  E  H  R  A  P  V  R  R  N  D  V  L  I  Q  L  K  I  *  L  I  S  Q  H  Q  C  W  V  E  T  S  S  F  E  R  L  R  I  Q  K  D  Q  M  G  I  S  *  L  D  Q  S  K  E  S  T  V  E  K  L  L  N  Q  Y  H  V  I  K  R  C  T  L  T  Y  C  I  T  V  I  R  F  L  K  S  G  S  T  K  R  I  F  W  T  R  I  Q  R  L  R  S  I  M  V  S  R  F  A  T  W  I  H  L  H  G  D  R  V  T  E  R  L  S  H  S  G  R  D  P  G  K  *  K  F  V  I  G  S  L  R  M  I  *  L  G  Q  L  L  I  E  K  K  K  R  N  E  I  I  C  K  I  S  N  S  G  R  T  G  C  V  T  R  R  R  K  K  V  P  L  V  *  L  L  *  *  L  L  L  L  *  S  *  F  I  F  *  V  I  F  V  *  V  S  L  C  L  H  *  V  *  M  A  I  N  L  H  Y  L  L  C  N  H  F  I  V  D  S  Y  L  S  K  V  M  *  L  L  P  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125800" stop="125684"/>
                    <exon start="125438" stop="123615"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1938</number_coding_nucleotides>
                  <number_encoded_amino_acids>646</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYSSPSLSSSLFHTKEMHTKIHLPPCILLLLLFSLPSFNVVVGGDGESGNPFTPKGYLIRYWKKQISNDLPKPWFLLNKASPLNAAQYATYTKLVADQNALTTQLHTFCSSANLMCAPDLSPSLEKHSGDIHFATYSDKNFTNYGTNEPGIGVNTFKNYSEGENIPVNSFRRYGRGSPRDNKFDNYASDGNVIDQSFNSYSTSTAGGSGKFTNYAANANDPNLHFTSYSDQGTGGVQKFTIYSQEANAGDQYFKSYGKNGNGANGEFVSYGNDTNVIGSTFTNYGQTANGGDQKFTSYGFNGNVPENHFTNYGAGGNGPSETFNSYRDQSNVGDDTFTTYVKDANGGEANFTNYGQSFNEGTDVFTTYGKGGNDPHINFKTYGVNNTFKDYVKDTATFSNYHNKTSQVLASLMEVNGGKKVNNRWVEPGKFFREKMLKSGTIMPMPDIKDKMPKRSFLPRVIASKLPFSTSKIAELKKIFHAGDESQVEKMIGDALSECERAPSAGETKRCVNSAEDMIDFATSVLGRNVVVRTTEDTKGSNGNIMIGSVKGINGGKVTKSVSCHQTLYPYLLYYCHSVPKVRVYEADILDPNSKVKINHGVAICHVDTSSWGPSHGAFVALGSGPGKIEVCHWIFENDMTWAIAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="141162" PGL_stop="142926"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="141162" e_stop="141259"/>
            <exon e_start="141710" e_stop="142926"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.931" acc_prob="0.995" e_score="0.990"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="141162" e_stop="141259" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="0.931" acc_prob="0.995">
            <gDNA_intron_boundary i_start="141260" i_stop="141709" i_length="450"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="141710" e_stop="142926" e_length="1217"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141162" stop="141259"/>
              <exon start="141710" stop="142483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141201" stop="141259"/>
              <exon start="141710" stop="142420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538401" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141233" stop="141259"/>
              <exon start="141710" stop="142099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141886" stop="142316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141924" stop="142803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142125" stop="142926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142126" stop="142805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142126" stop="142792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326691" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCATCTCTCTCTATTTCACACAAAAGAAATGCATAACAAAATTCTTGTTTCTTCCTACATCTTACTTGTTCTTTTGTTCTCACTATCATCTTTCAAT : ATTGTTGTGGCTAAAGATGGAGATGAATCTGGGAACCCGTTTACGCCAAAAGGTTATGTGATTAGATACTGGAATAAACATGTGTCGAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCACTCTCTACACACCTCCAATCCTTTTGCTCTTCAGCAAATCTCATGTGCGCGCCTGATCTGTTACCAAGTCTCGAAAAACACACTGGAGATATCCATTTTACTACTTACGGCAACAAAAACTTCACCAATTATGGTACCAACGAACCTGGAATCGGAGTTAACACCTTCAAAAACTATTCTGAAGATGCATCTGTAAATTCTTTCAGACGTTACGGTAGAGGTTCTCCCCGTGATAATAAATTTGATAATTACGCCCCTGATGGCAATGTAATTGACCAAAGTTTCAATTCCTATAGCACAAATACTCCAGGGGGTTCTGGCCAATTCACTAATTACGCCCCGAATACCAATGTCCCTGATCTACGTTTCACTGCCTATTCCGATCAAGGAACAGGCGGGGAACAAGAATTTAAAACTTATTTAGAACAGGGGAATTCTGGTGGCCAGTCTTTCAAAAGCTATGGCAAAAATGGAAATGGTGCTGATAGTAAATTCACCAGCTATGGGAACGAAACTAATGTTGCAGCCTCAACATTTAAAAACTATGGTCAAAATGCAAATGGGGAGAATCAAAATTTTACATCTTATAGTACTAATGGCAATAATCCTCAAAACAATTTCAAAAACTACGGCGTTGGAGGTAATGGTCCATCTGAGACTTTTACTAACTACAGAGATGAATCGAATGTTGGTGATGACAAGTTTAGTAACTATGTTAAGGATGCAAATGCTGGTGAAGCTAATTTCACCAATTATGGTCAATCGTTCAATGAAGGTACCGATGTATTCATTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAATAACACATTCAAAGATTATGTCAAAGATACAGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGTGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCC</gDNA_template>
            <first_frame> P  I  S  L  Y  F  T  Q  K  K  C  I  T  K  F  L  F  L  P  T  S  Y  L  F  F  C  S  H  Y  H  L  S  I :   L  L  W  L  K  M  E  M  N  L  G  T  R  L  R  Q  K  V  M  *  L  D  T  G  I  N  M  C  R  M  T  Y  Q  S  H  G  F  F  *  T  R  H  L  H  *  M  L  H  N  M  Q  L  T  L  N  L  L  L  I  K  M  H  S  L  H  T  S  N  P  F  A  L  Q  Q  I  S  C  A  R  L  I  C  Y  Q  V  S  K  N  T  L  E  I  S  I  L  L  L  T  A  T  K  T  S  P  I  M  V  P  T  N  L  E  S  E  L  T  P  S  K  T  I  L  K  M  H  L  *  I  L  S  D  V  T  V  E  V  L  P  V  I  I  N  L  I  I  T  P  L  M  A  M  *  L  T  K  V  S  I  P  I  A  Q  I  L  Q  G  V  L  A  N  S  L  I  T  P  R  I  P  M  S  L  I  Y  V  S  L  P  I  P  I  K  E  Q  A  G  N  K  N  L  K  L  I  *  N  R  G  I  L  V  A  S  L  S  K  A  M  A  K  M  E  M  V  L  I  V  N  S  P  A  M  G  T  K  L  M  L  Q  P  Q  H  L  K  T  M  V  K  M  Q  M  G  R  I  K  I  L  H  L  I  V  L  M  A  I  I  L  K  T  I  S  K  T  T  A  L  E  V  M  V  H  L  R  L  L  L  T  T  E  M  N  R  M  L  V  M  T  S  L  V  T  M  L  R  M  Q  M  L  V  K  L  I  S  P  I  M  V  N  R  S  M  K  V  P  M  Y  S  L  L  T  E  K  G  V  M  T  H  I  S  I  S  K  L  T  E  L  I  T  H  S  K  I  M  S  K  I  Q  L  H  F  P  I  T  T  T  K  L  R  R  I  *  L  R  *  V  R  L  T  V  A  K  R  *  I  T  G  G  L  S  P  G  S  F  S  V  R  R  C  *  R  V  V  Q  S  C  L  C  </first_frame>
            <second_frame>  P  S  L  S  I  S  H  K  R  N  A  *  Q  N  S  C  F  F  L  H  L  T  C  S  F  V  L  T  I  I  F  Q   : Y  C  C  G  *  R  W  R  *  I  W  E  P  V  Y  A  K  R  L  C  D  *  I  L  E  *  T  C  V  E  *  L  T  K  A  M  V  S  S  E  Q  G  I  S  I  E  C  C  T  I  C  N  L  H  *  T  C  C  *  S  K  C  T  L  Y  T  P  P  I  L  L  L  F  S  K  S  H  V  R  A  *  S  V  T  K  S  R  K  T  H  W  R  Y  P  F  Y  Y  L  R  Q  Q  K  L  H  Q  L  W  Y  Q  R  T  W  N  R  S  *  H  L  Q  K  L  F  *  R  C  I  C  K  F  F  Q  T  L  R  *  R  F  S  P  *  *  *  I  *  *  L  R  P  *  W  Q  C  N  *  P  K  F  Q  F  L  *  H  K  Y  S  R  G  F  W  P  I  H  *  L  R  P  E  Y  Q  C  P  *  S  T  F  H  C  L  F  R  S  R  N  R  R  G  T  R  I  *  N  L  F  R  T  G  E  F  W  W  P  V  F  Q  K  L  W  Q  K  W  K  W  C  *  *  *  I  H  Q  L  W  E  R  N  *  C  C  S  L  N  I  *  K  L  W  S  K  C  K  W  G  E  S  K  F  Y  I  L  *  Y  *  W  Q  *  S  S  K  Q  F  Q  K  L  R  R  W  R  *  W  S  I  *  D  F  Y  *  L  Q  R  *  I  E  C  W  *  *  Q  V  *  *  L  C  *  G  C  K  C  W  *  S  *  F  H  Q  L  W  S  I  V  Q  *  R  Y  R  C  I  H  Y  L  R  K  R  G  *  *  P  T  Y  Q  F  Q  N  L  R  S  *  *  H  I  Q  R  L  C  Q  R  Y  S  Y  I  F  Q  L  P  Q  Q  N  F  A  G  F  S  F  V  E  *  G  *  R  W  Q  K  G  E  *  Q  V  D  *  A  R  E  V  F  P  *  E  D  V  E  E  W  Y  N  H  A  Y  A </second_frame>
            <third_frame>   H  L  S  L  F  H  T  K  E  M  H  N  K  I  L  V  S  S  Y  I  L  L  V  L  L  F  S  L  S  S  F  N  :  I  V  V  A  K  D  G  D  E  S  G  N  P  F  T  P  K  G  Y  V  I  R  Y  W  N  K  H  V  S  N  D  L  P  K  P  W  F  L  L  N  K  A  S  P  L  N  A  A  Q  Y  A  T  Y  T  K  L  V  A  D  Q  N  A  L  S  T  H  L  Q  S  F  C  S  S  A  N  L  M  C  A  P  D  L  L  P  S  L  E  K  H  T  G  D  I  H  F  T  T  Y  G  N  K  N  F  T  N  Y  G  T  N  E  P  G  I  G  V  N  T  F  K  N  Y  S  E  D  A  S  V  N  S  F  R  R  Y  G  R  G  S  P  R  D  N  K  F  D  N  Y  A  P  D  G  N  V  I  D  Q  S  F  N  S  Y  S  T  N  T  P  G  G  S  G  Q  F  T  N  Y  A  P  N  T  N  V  P  D  L  R  F  T  A  Y  S  D  Q  G  T  G  G  E  Q  E  F  K  T  Y  L  E  Q  G  N  S  G  G  Q  S  F  K  S  Y  G  K  N  G  N  G  A  D  S  K  F  T  S  Y  G  N  E  T  N  V  A  A  S  T  F  K  N  Y  G  Q  N  A  N  G  E  N  Q  N  F  T  S  Y  S  T  N  G  N  N  P  Q  N  N  F  K  N  Y  G  V  G  G  N  G  P  S  E  T  F  T  N  Y  R  D  E  S  N  V  G  D  D  K  F  S  N  Y  V  K  D  A  N  A  G  E  A  N  F  T  N  Y  G  Q  S  F  N  E  G  T  D  V  F  I  T  Y  G  K  G  G  N  D  P  H  I  N  F  K  T  Y  G  V  N  N  T  F  K  D  Y  V  K  D  T  A  T  F  S  N  Y  H  N  K  T  S  Q  D  L  A  S  L  S  E  V  N  G  G  K  K  V  N  N  R  W  I  E  P  G  K  F  F  R  E  K  M  L  K  S  G  T  I  M  P  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="141164" stop="141259"/>
                    <exon start="141710" stop="142924"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1311</number_coding_nucleotides>
                  <number_encoded_amino_acids>437</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLSLFHTKEMHNKILVSSYILLVLLFSLSSFNIVVAKDGDESGNPFTPKGYVIRYWNKHVSNDLPKPWFLLNKASPLNAAQYATYTKLVADQNALSTHLQSFCSSANLMCAPDLLPSLEKHTGDIHFTTYGNKNFTNYGTNEPGIGVNTFKNYSEDASVNSFRRYGRGSPRDNKFDNYAPDGNVIDQSFNSYSTNTPGGSGQFTNYAPNTNVPDLRFTAYSDQGTGGEQEFKTYLEQGNSGGQSFKSYGKNGNGADSKFTSYGNETNVAASTFKNYGQNANGENQNFTSYSTNGNNPQNNFKNYGVGGNGPSETFTNYRDESNVGDDKFSNYVKDANAGEANFTNYGQSFNEGTDVFITYGKGGNDPHINFKTYGVNNTFKDYVKDTATFSNYHNKTSQDLASLSEVNGGKKVNNRWIEPGKFFREKMLKSGTIMPM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="143737" PGL_stop="142915"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="143737" e_stop="142915"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="143737" e_stop="142915" e_length="823"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143737" stop="142915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143736" stop="143257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269748" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATTCATTATAATAAATATGCATACAGTTTATTATTTCTCCTTCATGGACAAATAAAAGTGAACATAGTTACTTAGGGGAGGATATTACTTTGTCCAAATATAGAGAGATTACATAACAAATGTAAATCGACAGTTTTAATACATTCGGTTAAAACCCAAACAAGAAAATGTAAATATTTATTAAAATCCCGTTTTTCCCCAGGCTTAATCTGCAGTTGCCCAAGTCATGTCATTCTCAAAGATCCAGTGACAAACCTCTATTTTCCCGGGTCCTGACCCGAGTGCAATGAAGGCTCCGTGCCTCGGTCCCCATGAAGAAGTATCCACGTGGCAAATCGCAACACCATGGTTGATCTTAGCCTTTGAATTCGGGTCCAAAATATCCGCTTCGTAGACTCGGACTTTAGGAACCGAATGACAGTAATACAATAAGGAAGGGTACAGCGTTTGATGACATGATACTGATTTGGTAACTTTTCCACCATTGATTCCTTTTATTGATCCAATCATGATGTTCCCCTTTGATCCATTTGTATTCTCAGTTGTTCGAACCACCACATTACGACCCAACACTGATGTTGCGAAATCAATCATATCTTCAGCTGAATTAACACATTGTTTCGTCTCCCCAGGGCTCGGTGCTCTTTCACACTCACTCAGCGCATCGCCAATCATCTTTGCCACCTGTGAATCATTGGCCGCATGGAAAATTTTCTTCAGCTCATCAATCTTTGACGTAGAAAAAGGCAATTTCGCAGCAATCGCCCGGGGCAAAAAGGACCTTTTAGGCATCTTATCCTTTATATCTGGCATAGGCATG</gDNA_template>
            <first_frame> *  I  H  Y  N  K  Y  A  Y  S  L  L  F  L  L  H  G  Q  I  K  V  N  I  V  T  *  G  R  I  L  L  C  P  N  I  E  R  L  H  N  K  C  K  S  T  V  L  I  H  S  V  K  T  Q  T  R  K  C  K  Y  L  L  K  S  R  F  S  P  G  L  I  C  S  C  P  S  H  V  I  L  K  D  P  V  T  N  L  Y  F  P  G  S  *  P  E  C  N  E  G  S  V  P  R  S  P  *  R  S  I  H  V  A  N  R  N  T  M  V  D  L  S  L  *  I  R  V  Q  N  I  R  F  V  D  S  D  F  R  N  R  M  T  V  I  Q  *  G  R  V  Q  R  L  M  T  *  Y  *  F  G  N  F  S  T  I  D  S  F  Y  *  S  N  H  D  V  P  L  *  S  I  C  I  L  S  C  S  N  H  H  I  T  T  Q  H  *  C  C  E  I  N  H  I  F  S  *  I  N  T  L  F  R  L  P  R  A  R  C  S  F  T  L  T  Q  R  I  A  N  H  L  C  H  L  *  I  I  G  R  M  E  N  F  L  Q  L  I  N  L  *  R  R  K  R  Q  F  R  S  N  R  P  G  Q  K  G  P  F  R  H  L  I  L  Y  I  W  H  R  H  </first_frame>
            <second_frame>  E  F  I  I  I  N  M  H  T  V  Y  Y  F  S  F  M  D  K  *  K  *  T  *  L  L  R  G  G  Y  Y  F  V  Q  I  *  R  D  Y  I  T  N  V  N  R  Q  F  *  Y  I  R  L  K  P  K  Q  E  N  V  N  I  Y  *  N  P  V  F  P  Q  A  *  S  A  V  A  Q  V  M  S  F  S  K  I  Q  *  Q  T  S  I  F  P  G  P  D  P  S  A  M  K  A  P  C  L  G  P  H  E  E  V  S  T  W  Q  I  A  T  P  W  L  I  L  A  F  E  F  G  S  K  I  S  A  S  *  T  R  T  L  G  T  E  *  Q  *  Y  N  K  E  G  Y  S  V  *  *  H  D  T  D  L  V  T  F  P  P  L  I  P  F  I  D  P  I  M  M  F  P  F  D  P  F  V  F  S  V  V  R  T  T  T  L  R  P  N  T  D  V  A  K  S  I  I  S  S  A  E  L  T  H  C  F  V  S  P  G  L  G  A  L  S  H  S  L  S  A  S  P  I  I  F  A  T  C  E  S  L  A  A  W  K  I  F  F  S  S  S  I  F  D  V  E  K  G  N  F  A  A  I  A  R  G  K  K  D  L  L  G  I  L  S  F  I  S  G  I  G  M </second_frame>
            <third_frame>   N  S  L  *  *  I  C  I  Q  F  I  I  S  P  S  W  T  N  K  S  E  H  S  Y  L  G  E  D  I  T  L  S  K  Y  R  E  I  T  *  Q  M  *  I  D  S  F  N  T  F  G  *  N  P  N  K  K  M  *  I  F  I  K  I  P  F  F  P  R  L  N  L  Q  L  P  K  S  C  H  S  Q  R  S  S  D  K  P  L  F  S  R  V  L  T  R  V  Q  *  R  L  R  A  S  V  P  M  K  K  Y  P  R  G  K  S  Q  H  H  G  *  S  *  P  L  N  S  G  P  K  Y  P  L  R  R  L  G  L  *  E  P  N  D  S  N  T  I  R  K  G  T  A  F  D  D  M  I  L  I  W  *  L  F  H  H  *  F  L  L  L  I  Q  S  *  C  S  P  L  I  H  L  Y  S  Q  L  F  E  P  P  H  Y  D  P  T  L  M  L  R  N  Q  S  Y  L  Q  L  N  *  H  I  V  S  S  P  Q  G  S  V  L  F  H  T  H  S  A  H  R  Q  S  S  L  P  P  V  N  H  W  P  H  G  K  F  S  S  A  H  Q  S  L  T  *  K  K  A  I  S  Q  Q  S  P  G  A  K  R  T  F  *  A  S  Y  P  L  Y  L  A  *  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143280" stop="142915"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HDTDLVTFPPLIPFIDPIMMFPFDPFVFSVVRTTTLRPNTDVAKSIISSAELTHCFVSPGLGALSHSLSASPIIFATCESLAAWKIFFSSSIFDVEKGNFAAIARGKKDLLGILSFISGIGM</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143659" stop="143459"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRILLCPNIERLHNKCKSTVLIHSVKTQTRKCKYLLKSRFSPGLICSCPSHVILKDPVTNLYFPGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="143445" PGL_stop="143752"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="143445" e_stop="143752"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="143445" e_stop="143752" e_length="308"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143445" stop="143752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230462" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTGCACTCGGGTCAGGACCCGGGAAAATAGAGGTTTGTCACTGGATCTTTGAGAATGACATGACTTGGGCAACTGCAGATTAAGCCTGGGGAAAAACGGGATTTTAATAAATATTTACATTTTCTTGTTTGGGTTTTAACCGAATGTATTAAAACTGTCGATTTACATTTGTTATGTAATCTCTCTATATTTGGACAAAGTAATATCCTCCCCTAAGTAACTATGTTCACTTTTATTTGTCCATGAAGGAGAAATAATAAACTGTATGCATATTTATTATAATGAATTCACAGGTATTTCGAATA</gDNA_template>
            <first_frame> S  L  H  S  G  Q  D  P  G  K  *  R  F  V  T  G  S  L  R  M  T  *  L  G  Q  L  Q  I  K  P  G  E  K  R  D  F  N  K  Y  L  H  F  L  V  W  V  L  T  E  C  I  K  T  V  D  L  H  L  L  C  N  L  S  I  F  G  Q  S  N  I  L  P  *  V  T  M  F  T  F  I  C  P  *  R  R  N  N  K  L  Y  A  Y  L  L  *  *  I  H  R  Y  F  E   </first_frame>
            <second_frame>  H  C  T  R  V  R  T  R  E  N  R  G  L  S  L  D  L  *  E  *  H  D  L  G  N  C  R  L  S  L  G  K  N  G  I  L  I  N  I  Y  I  F  L  F  G  F  *  P  N  V  L  K  L  S  I  Y  I  C  Y  V  I  S  L  Y  L  D  K  V  I  S  S  P  K  *  L  C  S  L  L  F  V  H  E  G  E  I  I  N  C  M  H  I  Y  Y  N  E  F  T  G  I  S  N  </second_frame>
            <third_frame>   I  A  L  G  S  G  P  G  K  I  E  V  C  H  W  I  F  E  N  D  M  T  W  A  T  A  D  *  A  W  G  K  T  G  F  *  *  I  F  T  F  S  C  L  G  F  N  R  M  Y  *  N  C  R  F  T  F  V  M  *  S  L  Y  I  W  T  K  *  Y  P  P  L  S  N  Y  V  H  F  Y  L  S  M  K  E  K  *  *  T  V  C  I  F  I  I  M  N  S  Q  V  F  R  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0261K11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="145573" PGL_stop="146877"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="145573" e_stop="145647"/>
            <exon e_start="146377" e_stop="146877"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="145573" e_stop="145647" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="145648" i_stop="146376" i_length="729"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="146377" e_stop="146877" e_length="501"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145573" stop="145647"/>
              <exon start="146377" stop="146877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316077" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGAAATGCATACCAAAATTCTTCTTCCTTCCTGCATCTTACTTCTTCTTTTGTTCACACTATCATCTTTGGAT : GTTGTTGTGGCTAAAGATGGAGATGAATCTGGGAACCCGTTTACGCCAAAAGGTTATCTGATTAGATACTGGAATAAACATGTCTCAAATGACTTACCAAAGCCATGGTTTCTTCTGAACAAGGCATCTCCATTGAATGCTGCACAATATGCAACTTACACTAAACTTGTTGCTGATCAAAATGCATTCACTACACACCTCCAATCCTTTTGCTCTTCAGCAAATCTCATGTGTGCGCTTGATTTGTTACCAAGTCTTGAAAAACACAAAGGAGATGTCCATTTTGTCTCTTACGGTGACAAGAACTTTACCAATTACGGTACCAAAGAATCTGGTCTCGGATTCAACTCTTTCAAGAACTATACAGAGGAAGAAAATTTCCCTGTGAATTCTTTCAGGCGCTACGGTAGAGATTCTCCTCATGATAATCAATTTGACAACTATGGTGCCCCTGGTGGCAATACGCCTGTCCAAAGTTTCAACAGCTATAGCACAAATACT</gDNA_template>
            <first_frame> K  E  M  H  T  K  I  L  L  P  S  C  I  L  L  L  L  L  F  T  L  S  S  L  D  :  V  V  V  A  K  D  G  D  E  S  G  N  P  F  T  P  K  G  Y  L  I  R  Y  W  N  K  H  V  S  N  D  L  P  K  P  W  F  L  L  N  K  A  S  P  L  N  A  A  Q  Y  A  T  Y  T  K  L  V  A  D  Q  N  A  F  T  T  H  L  Q  S  F  C  S  S  A  N  L  M  C  A  L  D  L  L  P  S  L  E  K  H  K  G  D  V  H  F  V  S  Y  G  D  K  N  F  T  N  Y  G  T  K  E  S  G  L  G  F  N  S  F  K  N  Y  T  E  E  E  N  F  P  V  N  S  F  R  R  Y  G  R  D  S  P  H  D  N  Q  F  D  N  Y  G  A  P  G  G  N  T  P  V  Q  S  F  N  S  Y  S  T  N  T </first_frame>
            <second_frame>  K  K  C  I  P  K  F  F  F  L  P  A  S  Y  F  F  F  C  S  H  Y  H  L  W  M :   L  L  W  L  K  M  E  M  N  L  G  T  R  L  R  Q  K  V  I  *  L  D  T  G  I  N  M  S  Q  M  T  Y  Q  S  H  G  F  F  *  T  R  H  L  H  *  M  L  H  N  M  Q  L  T  L  N  L  L  L  I  K  M  H  S  L  H  T  S  N  P  F  A  L  Q  Q  I  S  C  V  R  L  I  C  Y  Q  V  L  K  N  T  K  E  M  S  I  L  S  L  T  V  T  R  T  L  P  I  T  V  P  K  N  L  V  S  D  S  T  L  S  R  T  I  Q  R  K  K  I  S  L  *  I  L  S  G  A  T  V  E  I  L  L  M  I  I  N  L  T  T  M  V  P  L  V  A  I  R  L  S  K  V  S  T  A  I  A  Q  I   </second_frame>
            <third_frame>   R  N  A  Y  Q  N  S  S  S  F  L  H  L  T  S  S  F  V  H  T  I  I  F  G   : C  C  C  G  *  R  W  R  *  I  W  E  P  V  Y  A  K  R  L  S  D  *  I  L  E  *  T  C  L  K  *  L  T  K  A  M  V  S  S  E  Q  G  I  S  I  E  C  C  T  I  C  N  L  H  *  T  C  C  *  S  K  C  I  H  Y  T  P  P  I  L  L  L  F  S  K  S  H  V  C  A  *  F  V  T  K  S  *  K  T  Q  R  R  C  P  F  C  L  L  R  *  Q  E  L  Y  Q  L  R  Y  Q  R  I  W  S  R  I  Q  L  F  Q  E  L  Y  R  G  R  K  F  P  C  E  F  F  Q  A  L  R  *  R  F  S  S  *  *  S  I  *  Q  L  W  C  P  W  W  Q  Y  A  C  P  K  F  Q  Q  L  *  H  K  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145573" stop="145647"/>
                    <exon start="146377" stop="146877"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEMHTKILLPSCILLLLLFTLSSLDVVVAKDGDESGNPFTPKGYLIRYWNKHVSNDLPKPWFLLNKASPLNAAQYATYTKLVADQNAFTTHLQSFCSSANLMCALDLLPSLEKHKGDVHFVSYGDKNFTNYGTKESGLGFNSFKNYTEEENFPVNSFRRYGRDSPHDNQFDNYGAPGGNTPVQSFNSYSTNT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="147018" PGL_stop="148396"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="147018" e_stop="148396"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="147018" e_stop="148396" e_length="1379"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147018" stop="147694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147104" stop="147961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147144" stop="147701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147189" stop="147723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147189" stop="147600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147207" stop="148019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147208" stop="147765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147270" stop="147821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147353" stop="147914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147368" stop="148094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147379" stop="148216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147394" stop="148396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147394" stop="148384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147394" stop="148216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147394" stop="148102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147398" stop="148210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147424" stop="147999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147429" stop="148080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147439" stop="148210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147442" stop="148099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147511" stop="148210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147543" stop="147910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147557" stop="148396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147574" stop="148094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147592" stop="148113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147797" stop="148205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698040" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTTTCAAAAGCTATGGAAAAGATGGGAATGGGGCGGATAGTCAATTCACTACTTATGGAAACAATACTAATGTTGATGGCTCAGACTTTACAAATTATGGTGAGGCAGCAAATGGGGAGAACCAAAATTTCACATCTTATGGTTTCAACGGCAATAATCCGGCAAGCAGTTTCAACAACTACGGCGTTGGAGGTAATGGTCCATCTGAGGCTTTTAATAGTTACAGAGATCAATCGAATGTTGGAGATGACACGTTCACAACCTATGTTAAGGATGCAAATGGCGGTGAAGCGAATTTCACCAACTATGGTCAATCATTCAATGAAGGTACTGATGTATTCACTACTTACGGAAAAGGGGGTAATGACCCACATATCAATTTCAAAACTTACGGAGTTAACAACACTTTCAAAGATTATGTCAAAGATACTGCTACATTTTCCAATTACCACAACAAAACTTCGCAGGATTTAGCTTCGTTGAGTGAGGTTAACGGTGGCAAAAAGGTGAATAACAGGTGGATTGAGCCCGGGAAGTTTTTCCGGGAGAAGATGTTGAAGAGTGGTACAATCATGCCTATGCCAGATATAAAGGATAAGATGCCTAAAAGGTCCTTTTTGCCCCGGGCGATTGCTGCGAAATTACCTTTTTCTACTTCAAAGATTGATGAGCTGAAGAAAATTTTCCATGCGGCCAATGATTCACAGGTGGCAAAGATGATTGGCGATGCGCTGAGTGAGTGTGAAAGAGCACCGAGCCCTGGGGAGACGAAACAATGTGTTAATTCAGCTGAAGATATGATTGATTTCGCAACATCAGTGTTGGGTCGTAATGTGGTGGTTCGAACAACTGAGAATACAAATGGATCAAAGGGGAATATCATGATTGGATCAATAAAAGGAATCAATGGTGGAAAAGTTACCAAATCAGTATCATGTCATCAAACGCTGTACCCTTCCTTATTGTATTACTGTCATTCGGTTCCTAAAGTCCGAGTCTACGAAGCGGATATTTTGGACCCGAATTCAAAGGCTAAGATCAACCATGGTGTTGCGATTTGCCACGTGGATACTTCTTCATGGGGACCGAGGCACGGAGCCTTCGTTGCACTCGGGTCAGGACCCGGGAAAATAGAGGTTTGTCACTGGATCTTTGAGAATGACATGACTTGGGCAACTGCTGATTGAGACAATTGCTGATCTTAACGGTGTGTTACAATATGCGGAAAATATAAGTTTGAATGGCTATTAGTTTATGTATTGTCTATTGTTTGTCTCTCTGTACGTATGAAGGACGTACTCTCTATGTTTACTTTTATTTATTGCACTTTTGTTAAGAAGTAATAAATAAAACGCATATTTTATTATAATATTTATA</gDNA_template>
            <first_frame> I  F  Q  K  L  W  K  R  W  E  W  G  G  *  S  I  H  Y  L  W  K  Q  Y  *  C  *  W  L  R  L  Y  K  L  W  *  G  S  K  W  G  E  P  K  F  H  I  L  W  F  Q  R  Q  *  S  G  K  Q  F  Q  Q  L  R  R  W  R  *  W  S  I  *  G  F  *  *  L  Q  R  S  I  E  C  W  R  *  H  V  H  N  L  C  *  G  C  K  W  R  *  S  E  F  H  Q  L  W  S  I  I  Q  *  R  Y  *  C  I  H  Y  L  R  K  R  G  *  *  P  T  Y  Q  F  Q  N  L  R  S  *  Q  H  F  Q  R  L  C  Q  R  Y  C  Y  I  F  Q  L  P  Q  Q  N  F  A  G  F  S  F  V  E  *  G  *  R  W  Q  K  G  E  *  Q  V  D  *  A  R  E  V  F  P  G  E  D  V  E  E  W  Y  N  H  A  Y  A  R  Y  K  G  *  D  A  *  K  V  L  F  A  P  G  D  C  C  E  I  T  F  F  Y  F  K  D  *  *  A  E  E  N  F  P  C  G  Q  *  F  T  G  G  K  D  D  W  R  C  A  E  *  V  *  K  S  T  E  P  W  G  D  E  T  M  C  *  F  S  *  R  Y  D  *  F  R  N  I  S  V  G  S  *  C  G  G  S  N  N  *  E  Y  K  W  I  K  G  E  Y  H  D  W  I  N  K  R  N  Q  W  W  K  S  Y  Q  I  S  I  M  S  S  N  A  V  P  F  L  I  V  L  L  S  F  G  S  *  S  P  S  L  R  S  G  Y  F  G  P  E  F  K  G  *  D  Q  P  W  C  C  D  L  P  R  G  Y  F  F  M  G  T  E  A  R  S  L  R  C  T  R  V  R  T  R  E  N  R  G  L  S  L  D  L  *  E  *  H  D  L  G  N  C  *  L  R  Q  L  L  I  L  T  V  C  Y  N  M  R  K  I  *  V  *  M  A  I  S  L  C  I  V  Y  C  L  S  L  C  T  Y  E  G  R  T  L  Y  V  Y  F  Y  L  L  H  F  C  *  E  V  I  N  K  T  H  I  L  L  *  Y  L   </first_frame>
            <second_frame>  S  F  K  S  Y  G  K  D  G  N  G  A  D  S  Q  F  T  T  Y  G  N  N  T  N  V  D  G  S  D  F  T  N  Y  G  E  A  A  N  G  E  N  Q  N  F  T  S  Y  G  F  N  G  N  N  P  A  S  S  F  N  N  Y  G  V  G  G  N  G  P  S  E  A  F  N  S  Y  R  D  Q  S  N  V  G  D  D  T  F  T  T  Y  V  K  D  A  N  G  G  E  A  N  F  T  N  Y  G  Q  S  F  N  E  G  T  D  V  F  T  T  Y  G  K  G  G  N  D  P  H  I  N  F  K  T  Y  G  V  N  N  T  F  K  D  Y  V  K  D  T  A  T  F  S  N  Y  H  N  K  T  S  Q  D  L  A  S  L  S  E  V  N  G  G  K  K  V  N  N  R  W  I  E  P  G  K  F  F  R  E  K  M  L  K  S  G  T  I  M  P  M  P  D  I  K  D  K  M  P  K  R  S  F  L  P  R  A  I  A  A  K  L  P  F  S  T  S  K  I  D  E  L  K  K  I  F  H  A  A  N  D  S  Q  V  A  K  M  I  G  D  A  L  S  E  C  E  R  A  P  S  P  G  E  T  K  Q  C  V  N  S  A  E  D  M  I  D  F  A  T  S  V  L  G  R  N  V  V  V  R  T  T  E  N  T  N  G  S  K  G  N  I  M  I  G  S  I  K  G  I  N  G  G  K  V  T  K  S  V  S  C  H  Q  T  L  Y  P  S  L  L  Y  Y  C  H  S  V  P  K  V  R  V  Y  E  A  D  I  L  D  P  N  S  K  A  K  I  N  H  G  V  A  I  C  H  V  D  T  S  S  W  G  P  R  H  G  A  F  V  A  L  G  S  G  P  G  K  I  E  V  C  H  W  I  F  E  N  D  M  T  W  A  T  A  D  *  D  N  C  *  S  *  R  C  V  T  I  C  G  K  Y  K  F  E  W  L  L  V  Y  V  L  S  I  V  C  L  S  V  R  M  K  D  V  L  S  M  F  T  F  I  Y  C  T  F  V  K  K  *  *  I  K  R  I  F  Y  Y  N  I  Y  </second_frame>
            <third_frame>   L  S  K  A  M  E  K  M  G  M  G  R  I  V  N  S  L  L  M  E  T  I  L  M  L  M  A  Q  T  L  Q  I  M  V  R  Q  Q  M  G  R  T  K  I  S  H  L  M  V  S  T  A  I  I  R  Q  A  V  S  T  T  T  A  L  E  V  M  V  H  L  R  L  L  I  V  T  E  I  N  R  M  L  E  M  T  R  S  Q  P  M  L  R  M  Q  M  A  V  K  R  I  S  P  T  M  V  N  H  S  M  K  V  L  M  Y  S  L  L  T  E  K  G  V  M  T  H  I  S  I  S  K  L  T  E  L  T  T  L  S  K  I  M  S  K  I  L  L  H  F  P  I  T  T  T  K  L  R  R  I  *  L  R  *  V  R  L  T  V  A  K  R  *  I  T  G  G  L  S  P  G  S  F  S  G  R  R  C  *  R  V  V  Q  S  C  L  C  Q  I  *  R  I  R  C  L  K  G  P  F  C  P  G  R  L  L  R  N  Y  L  F  L  L  Q  R  L  M  S  *  R  K  F  S  M  R  P  M  I  H  R  W  Q  R  *  L  A  M  R  *  V  S  V  K  E  H  R  A  L  G  R  R  N  N  V  L  I  Q  L  K  I  *  L  I  S  Q  H  Q  C  W  V  V  M  W  W  F  E  Q  L  R  I  Q  M  D  Q  R  G  I  S  *  L  D  Q  *  K  E  S  M  V  E  K  L  P  N  Q  Y  H  V  I  K  R  C  T  L  P  Y  C  I  T  V  I  R  F  L  K  S  E  S  T  K  R  I  F  W  T  R  I  Q  R  L  R  S  T  M  V  L  R  F  A  T  W  I  L  L  H  G  D  R  G  T  E  P  S  L  H  S  G  Q  D  P  G  K  *  R  F  V  T  G  S  L  R  M  T  *  L  G  Q  L  L  I  E  T  I  A  D  L  N  G  V  L  Q  Y  A  E  N  I  S  L  N  G  Y  *  F  M  Y  C  L  L  F  V  S  L  Y  V  *  R  T  Y  S  L  C  L  L  L  F  I  A  L  L  L  R  S  N  K  *  N  A  Y  F  I  I  I  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0261K11.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="147019" stop="148206"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1185</number_coding_nucleotides>
                  <number_encoded_amino_acids>395</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFKSYGKDGNGADSQFTTYGNNTNVDGSDFTNYGEAANGENQNFTSYGFNGNNPASSFNNYGVGGNGPSEAFNSYRDQSNVGDDTFTTYVKDANGGEANFTNYGQSFNEGTDVFTTYGKGGNDPHINFKTYGVNNTFKDYVKDTATFSNYHNKTSQDLASLSEVNGGKKVNNRWIEPGKFFREKMLKSGTIMPMPDIKDKMPKRSFLPRAIAAKLPFSTSKIDELKKIFHAANDSQVAKMIGDALSECERAPSPGETKQCVNSAEDMIDFATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVYEADILDPNSKAKINHGVAICHVDTSSWGPRHGAFVALGSGPGKIEVCHWIFENDMTWATAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 360 chains have been computed
$ 
$ memory statistics:
$ 386752 bytes spliced alignments in total
$ 184 spliced alignments have been stored
$ 2101 bytes was the average size of a spliced alignment
$ 33472 bytes predicted gene locations in total
$ 22 predicted gene locations have been stored
$ 1521 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 417 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:45:05
-->
