<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:35:15"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7502" ref_strand="+" ref_description="SGN-M7502 C2_At2g43180 [cosii_markers]">
      <seq>ctgtgattgacaatgaattccgcatcaatttccagcatagagttcagaactttctcgaatcttccgtcacgccgaactgcatacttaactcaccggcgcgtagccgagacgctccatcaaagtgcttcttcattgccggaaagagtaggtagcagcagtagcaaagctggaaggaaatcatttattcgctacactgtctctgctagctatggtgataaggaatcgggttcagttaactctaatgagtttacttctccagcgaaggcactccggaaactattagaatcgccgggagttcatcaaggaccagcttgtttcgatgctctcagtgctaagcttgttgaacgagctgggttcgatttctgctttacaactggttttggaatatctgctgcacggttaggactgccagatgcaggactaatttcttacggagagatggtggctcaaggtctagagatcacacaagcagtgtccataccagtaattggggatggagataatggatatggcaacgccatgaatgtcaagagaactgtgaaaggatatattagagcaggtttcgggggaataatccttgaagatcaggtttctcccaaagcatgtggtcacacacgtggcaggaaagttgtttctcgggaggaagcaatcatgagaataaaagcggctgttgatgctcgaaaagaaagtggatctgacatcgtgattgtggcacgtactgatgcacgtcaagcagtctcctttgaagaagccatttggcgggcacgtgctcttgctgatgctggagctgatgttctgttcatagatgctcttgcttccaaagaagagatgaaagctttctgtgatgtctatccactggttccgaagcttgcaaatatgcttgaaggtggtggtaaaacaccaatattcactccaattgaacttgaggaacttggatacaaactggtggcatatccactttccttgattggggtatcaatcggtgcaatgcaggatgcattgtctgccattaaaggaggtcggataccatcgccgggtagcatgccttcatttgaagagctaaaagagatcctaggtttcaatacctactatgaagaagagaagcgttatgcaacaacaagcagtcaacttccttctcgtaaaggtgatttctcatcaaacagcaatgagtatggtgttcaacccggcatccaagctgatagagtgcagaggactcaaatacccgagaatcctgttgaggtattgatacctgaggtgtatgacagattttctggtgagggtaagaaaggaaatttctcaatggcctggtctcggaaattgagagtcaagattactggaaaagatggatttgaaaaactagatatcagaattcctgctggatttttggaaggaatcacaaacatagttccagctttggtaggtgtaaacatcaagtctctgttggatgaggcaactttagaagagggtgggaaacaattgttggattttcaggatacaatgggtgacaggatacaagttattttggagtaaaggagatcttgcttcttattcctgtattttgatgaatgaatattatatggcaaatgatgtacaatccctagcttagcttggcccctcagatttggtctaaatggaagagcataatgcatatgaaataatgtgtgggttaagcgcatgttacaaaagagtatggtattgttttctgcatgtaatcccctaaaatattgatcaataatataatttagttaaaataaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="12011" stop="19852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12311" g_stop="12686" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13831" g_stop="14042" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="588" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15665" g_stop="15946" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="870" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15947" i_stop="16483" i_length="537">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16484" g_stop="16606" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="871" r_stop="993" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16607" i_stop="17593" i_length="987">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17594" g_stop="17744" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="994" r_stop="1144" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17745" i_stop="17868" i_length="124">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17869" g_stop="18098" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1145" r_stop="1374" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18099" i_stop="19070" i_length="972">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19071" g_stop="19107" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1375" r_stop="1411" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19108" i_stop="19210" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19211" g_stop="19553" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1412" r_stop="1754" r_length="343" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1755" polyA_stop="1772"/>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-M7502" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1754</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12311" e_stop="12686"/>
          <exon e_start="13831" e_stop="14042"/>
          <exon e_start="15665" e_stop="15946"/>
          <exon e_start="16484" e_stop="16606"/>
          <exon e_start="17594" e_stop="17744"/>
          <exon e_start="17869" e_stop="18098"/>
          <exon e_start="19071" e_stop="19107"/>
          <exon e_start="19211" e_stop="19553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGATTGACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTGGTATGCAATTTGTTCTATGCTCAAATCTTTTTTTGCTTTTAATCACTGAGTAAATCCAGAGGATTCACGATAGTTTGACTATTCTAAGATAGCTGTTGACGCACTGCAGTGGTACTACTTTATCTTTGTTTGTGGACTGCAGCTCTTATTATTTCTACAGAGCGTTGGTTAGACCAACATTGTTGTATGGGGCAAAGGGCTGGCCAGTCAAGTACGCCCATGTCTATAAGTACAATGTAGTAGTGATGAGGATGCTCAGATGTATGTGTGAGTATACCAGGAGAGATATGACTAGGAATGAAGTATTACAGGATAAAGTGAGACTGGCCTTCGTGATGTGGCGGACAAGACGAGGAAAGCGAGGCTGAAGTGGTTTGGGCATTTGAAGAGGAGGCGTGTGGATGCGCCAATAAGTAGATGTAAGGGTTGGAGAGGTAAGGGTAGGCCAAAGAAGAACAAGGAGAGGTAATTAGACATGACATGATACAACTTCAGATTACTGAGGACATGATCCTAGATAAGAAGGTATAGAATAGAAGGTATGGATATTGAGGATTAGGTAGAAATGTAGTAGATAGCTGATTGGTGTTTTACTTTAGGTGGGATAGGCAGGGGACTAGCCTCATCTACAGTTCTTCATACTCTGTAGTATTATTATTTAGTATTCACATAGCTTCTTATTCTTTCACGTGTTTTACCATCTGTTGTTTGTTGCTTATTTGCTTTGTATCTTGCTGTTTACTGTCTGTTGCTTATTCACTTTGTATCTTTTAGTAAGACATGAAGCCATGAAATAAACCAAAGGCGAGACTCTGCTATAAAGTTAATTCTGGAACTAAAAGAATTTCTAAGATCTCTAGCCTCAGTTCTTGTTAGGTTTTTGTATACTACCTGGTTAATGGCTCCATATAGTGTTGTTAATTAGTCCAAACCCTTCTGCTGTTGGTAGAGCTTGTTGAGGCGTTGATGTGTGCTGATTATCTACAGGCTATAAGCACTGGAAATTAAGTAAGGTGTTGAATTAGAACTTTCAATGTATTAGTCTTTCTTTCTTTTGATTTAACTTAAGAATGAAGTTATAGTGAGTTTGCCAAATACTTCTCATATGTTCTTTTGTTAGCTAATATCTGGAAAACATCTGTAGGTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAGGTTTGCGTGTTTCAAGCTTTTTTACCCTCTACTGTTGCTTGATAATTCTTGTTCATTTTTGCAACTCTTTATAATGTTTTCCATTTCCTCCTCTAGCAATGGTGTTAAAACATTCCTTTTCCTCAGTTAGTCTGTAATTTGCTGTCTCTTTTGAAGGGTGGCTTCCAATTTTCATTTTCCCTTTATAAGCTCCTATAGAAATTGATAATGTCCTTCTTGATTTCCACTGGATTCCTAACGGAAGTGCCATTTAATTTTCAGCGTGTCTATATGGTTGTGTATTGTTTAAGCGCATTTGCCATCATCTGAGAGAACTTTCATGCTCATGTCTCCCTTTAAACATCTGAACTCCATCTCCAAGAGATTTTTTCTACTCAAGGAATTTTTGGAATTCCATGAGTATAGATCTACACTACATATACAGCTTCATGCAATGGTTTTGTTTCTTTTGACTTTCATTTCAGAGGAGGAAACAGAAAGGAATGCGAAGTATCCACGTTTTCTCTTCATGCGTGTGATTTGCAAGGAAAATAATATAAAAGAGTGTAACTTCTATTGGGCTCACTTCTTTAGTTGAATGAGAAAGCAACTGAGTTCAGACTTCGTCGTTCCTCACTTTCTATTCTATCCAAACAGAAAGAAATGGATATCTTTAACTATCTATGCCATTTTCCTTCTTCTTTCTGCCATCCCTCTTTCCATTTTTACTTTTTTGATTATTGAGTTAGTGTCATGAATAAGTCTTGATCCTCTTCCTTCCGTTTCTATTTCTTACATTCATGTGAAAAAAAATTTTCTACTTGTATTTAGAAACGTCCAGTAACTAAGTAAAAGAAGCAAATCTACTTTAGATATTACTTGGTTCTAGGTACAAATATCTTGATTTTGATGCCTTAACTTCATTTATTTCTAATGAGGCATCTCACAAAATGCAAGTATTTGGGGATGTTAATTACAAGTCTAAGCATGCACTCTAGGATGCAAGTGTTTTAGGTTTCACAGTAGAGAATATAATTTTACATTCTTGCGAAACTTGAATGATTTTTCTATGGTGGATTGTTAGCTTTTCTTCATGCTTTAAGATATGGACCACTGTTCCTTCTTTAGGACTTAAACAAGGAGAAGCAATTAACATGCAAATAGAAGTTTAATCTTATTGATTTGTTTTAGAACACACACTTGGTCAACAAGTGTCCCCATGTGCAAGACTTTTGTAGTTCAATTTATCTTTATGTCACATATGATAGTATCATGGCTTCAATTTAAGGGGTGGTTGACTCTTCATTCGTTTTCTTTGTTTAGGCAGAACATGCTTAGCAATGAGCAGAACTGCAATTCACTGAATCGTAATTTTAAGCCTCAAAGTTCATGTATTATACATTGTCTCTGCTTTTATCTAAATACTTTTATACATCTAATAATAAATAAAGCATTTCCTCCCTGTTTGTGTTTTTTTGGTATCACGAATACTTTCTCCTTGTTATTTGTTCTTTTTGTTAATTTTACTCCAGAAGTTAACGGTCTTATAGAATGTAGTTGAAAAATCGTAATTGTTGTGGCTCTCATCTCCCTTACCTCCACCTTGTTTCTGGACTTAATCGCGTGTGATGCTGTTTTTGAAGGTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTTGTATGCCTTCTTTCCAGATTCTGCATTGACTAGCATGTTTATATTATTCTAATTAGAAAGCTCCACTTCAGTAGATGTTTTTATAAAATATTGACTCCAACACATTCTCTATAAGCTTCATTCTCCCAAAAAAAAAAGGAACATTTTCTAAAAGCTAGATCTTTAGTTAGTTTGTTCTGTTGGAACTATCTTACACCTGTTCATAGTGTTGACAATTGTTTGGATTTTGTTAGCTCCCTGGTTCTAGCATAGGGAAACTTGTCTTGGAGCTGAAAATGTATTTTTGTCTTTTGTGCTGGCGCTAACATGCCTTTTATCTTTTGTAATATGGCATCTTCCTGATGCCCTTTCAATGATATTATCTTACTTCATCAAAAAAAGAAAGTAGAAAGCTCCATGTAGTATATATATTCTTCTCGGTGACATCCTTTTGCCTTTGTACACATGATCAGGGCATTGAGTTTTGTTATAATGGAGGAACTTTCAGCATTGGTTTGGTGTAAAGTTTTCTGATAGAGCTTTTACAATTGCATCCAGGCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAGGTTAGTTTTTGTACTTCATATTATCCTTTTCCTACAGAATTTTTACTTGTTCCTGCAGGTTTTATAGTTAGGCGCATCCTGGAAGTACACACATAAAAACAACACACTTGCTAGCTATAGATCAAACCTACTCAGAAATTCCTCTGCCCCACCCTATACAGAAGTATGACAGTGATTTCATGGGAATATCTTTCCTTGGAAGGGAATCACTTACACCAAACTGCCCCTTCTGTTTCCCTACTTGAGGAACATCTTTTCTTCCTTCTTTTTTTTTTTCGTTTTGTTTAAAATTAGTGATCTCAAAGTTTCTTATACTGTGCAAAGTTGTAGTTTTTGGACTAAATGAAGCAAGCATTGAGAACGAGGTACATAAGCAGCAGGCTATTATGCCATGAGAGGCTATGAAGTTTTTTTTTGTGTTTATAAAGTAAGTTGATTTATTGATTGGCATAAAGAAGATGCAGAGGCTATAAAACTTAAGTAAATATGTATGTAGTTTGTGGATTTGAGTGTGCAAAAACAATCCAAATCCCTTATTTTCCCAGTTTCTCTACCATTGAAGAAGTATTTGGTAACATGTGAAGATATGTCTTTATCTAAAGGACTCTTTATAAAGGCAATTGATGTTGCACTTAACTTGTTTTGTTCTATATCCTCAAATCAAGCATATCTTGCTGAAGCTTGGAAGGGCTTCAGTGAGTAAGTCTTCACACAGTCAGTCATTGGTTTCTTAGTATTGTTTCTATTTTCTGTGTTCTTTTTGTTTCTTCCTGCAATTTCTCCGAAATGTATATAAAACAACACTTGAAATAGAAATAGCTAGATTGCTCCCTACATAATCAGCTTTTAGTAGAAAAGGCTAATTCTTCACTTGTCAACTACTAGCTTGAGATACAGACCCCATGACAGCTTGCCAAAAAAATTTCTGCTGCACAACATTTACAAAAAAAAAACGTTGATCTCTTAACTCGTTACTAACATCTTCAGGATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAGGTGAGCAATGCCGTCAATTTAGGCTTTCTAATTATTTGGAAAGACAATTTGGATTCAGAACTTGTCAGATCCTTTTAGTACTGATCCAAAGACATTTACCTTGCTTTCACATTTTAAATATCAGGTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAGATATCAGAATTCCTGTAAGTTATACTCCTCAAGCTGTTTTTTGTCTTTCAGCTATTACATATGTGGAATTAGTGAGCTAAAAACTATTTACAATAAATGTTTTAAGAGACTATTTAACAGTTCATGATGCATGACGAAGGGTTCACACTGTCATTGACATAGTTGATATTGTCTTGAGGTTTAACAATGAATATTTGAGAGCAAGTCTTAATTTTTTTTATAGATATCAGTTTTGGTAAATCATTTTGAAGCCTTGCAATGCTAGCACCGCACCCACAGTCCGCTTATTTTTTTTCTTTTGTAAAGGAAGGCTAACATCCCCACTTAAATTGTTCTGCTGGACTCCAGCAAGGGCTTTTATGATAGTAACAGGCTAGAGATGTTGACTCTTTGGTGGGCCAAGAATTAAGTAAAATGCCTCAGATTTAAGGGATGCCTTCTTATCTATGTTAGAAGCTATGTGGTAAGAGACTCAGTTTTGATATCAAATATACTGAGTTCTATATTCCAAGTTTCAATATCTTAACAATTATCAAGATTTAAATTTTTAAGAGAGAATAATTCCTTGTGTAGTTTTGAATAACTGATGTTTTGGTAATTGGTGCCAAACTATGTTGCAACCATTTTGTTGGAGCCGTTCTTTTTCTTGGGTATAATCACTAGTTCAAAAACAGTTCGGAATCTTTTTGATCTTACATTAATGTTGTGATTCTTGCGTATCCACAAGAGAATATATGAGGTGCCTGTTTAATTCAATTTAGAGTTGTATTTGTGATATCTTTAGCATTATGCACTTTCTTAAGGTTCACGCGTGTGCATGATCAATCTCTAGTTTGTCTTGGTTGTGTAACATAGTTTGAACTTGGTTTTTTATGAATATGGAACCTCATCCTCTATATCTTTGTGCGCGTGAAACTGTCTGCACATCATTATCTGTTGCATCAAGTTTATTAGTTTTTCCAATATTTTGCGTCTCTTTTCCTCAGGCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAGGTATGTTTGTTATTTTAAGTAGTTGGTAATGTTTTTAAAAAGTCAGATCTTATGAGCACATTTCTGAAAAGTTCAATACTGTGTCATTTTTTTTTCTATACAGCTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATGAGGCAACTTTAGAAGAGGGTGGGAAACAATTGTTGGATTTTCAGGATACAATGGGTGACAGGATACAAGTTATTTTGGAGTAAAGGAGATCTTGCTTCTTATTCCTGTATTTTGATGAATGAATATTATATGGCAAATGATGTACAATCCCTAGCTTAGCTTGGCCCCTCAGATTTGGTCTAAATGGAAGAGCATAATGCATATGAAATAATGTGTGGGTTAAGCGCATGTTACAAAAGAGTATGGTATTGTTTTCTGCATGTAATCCCCTAAAATATTGATCAATAATATAATTTAGTTAAAATAT</genome_strand>
        <mrna_strand>CTGTGATTGACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAG............................................................................................................................GTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAGATATCAGAATTCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAG.......................................................................................................CTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATGAGGCAACTTTAGAAGAGGGTGGGAAACAATTGTTGGATTTTCAGGATACAATGGGTGACAGGATACAAGTTATTTTGGAGTAAAGGAGATCTTGCTTCTTATTCCTGTATTTTGATGAATGAATATTATATGGCAAATGATGTACAATCCCTAGCTTAGCTTGGCCCCTCAGATTTGGTCTAAATGGAAGAGCATAATGCATATGAAATAATGTGTGGGTTAAGCGCATGTTACAAAAGAGTATGGTATTGTTTTCTGCATGTAATCCCCTAAAATATTGATCAATAATATAATTTAGTTAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M176-R" ref_strand="+" ref_description="SGN-M176-R TG185-R [rflp_markers_reverse]">
      <seq>cctctgtttgtcatcaagccatagaaccgttcgagtaagacccgggaaacaatatgcagaggaacttggcaagtgtttgtttaccttgggcttatgatattttgcagtatttcagtttcagtgagtatgtttgcattgactggtagtgtgatggaaattggaatagacgattctggctaaaactcattaggagagtttagtgtttaatctgaggtattctttggcattttattgtgggattctagcttactcatttttcctttttcagtttgacatatttatgtgaggtttgtacctcgataacaatctcatcgcattatgataatgattgtatgcagttttgattatttagccccgctatttcatgtgaaatagtttcaatttacttgactcaacataacttggaactactagagttctcattttcctcacatatgttatgttagaatcaatgtatatcgattataagatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="35219" stop="36317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35519" g_stop="36017" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-M176-R" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.051" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M176-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35519" e_stop="36017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTATGTGAAATAGTTTCAATTTACTTGACTCAACATAACTTGGAACTACTAGAGTTCTCATTTTCCACACATATGTTATGTTAGAATCGATGTATATCGATTATAAGATGTGA</genome_strand>
        <mrna_strand>CCTCTGTTTGTCATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCATTGACTGGTAGTGTGATGGAAATTGGAATAGACGATTCTGGCTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCA-TTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAATGATTGTATGCAGTTTTGATTATTTAG---C---CC----CG---C-TAT--TT-C------ATGTGAAATAGTTTCAATTTACTTGACTCAACATAACTTGGAACTACTAGAGTTCTCATTTTCCTCACATATGTTATGTTAGAATCAATGTATATCGATTATAAGATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M3087" ref_strand="+" ref_description="SGN-M3087 cLET-8-C14 [est_clones]">
      <seq>tgctgcaagcttgtaaagtgattgagagacacaattacgagctagcaatgaaatataacgatgtggtctttctgaagctggactgtaaccaggacaacaggccactagcaaaggaactaggcataaaggtggttccaacattcaagattctgaagaacaataagatcgttaaagaagtcaccggagcaaaacttgatgatttagtagcagcaattgagggtgtgcgatcaagttaaatatttcttcttttttttttctatgacttcttctgtttaaatatgaagcagataatgtctatgaatgtcgtaaattagttctaactaaattcagtgtatagccgtggataatgaagtctcattagagaaaatggatgtgatgtacttggcttgccaatgtttttatttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="36811" stop="35761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36724" g_stop="36724" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36723" i_stop="36544" i_length="180">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36543" g_stop="36444" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="101" r_length="100" r_score="0.810"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36443" i_stop="36366" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36365" g_stop="36057" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="410" r_length="309" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-M3087" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M3087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36724" e_stop="36724"/>
          <exon e_start="36543" e_stop="36444"/>
          <exon e_start="36365" e_stop="36057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATCGTTACTTGATTGAATGCTTCTTTGAATTTTGAGCTAGATGTTTTCTGGACCTTACTTTTATCTATCATCAGTAATAATTGGTTAGTTGTGCCTCTGGGAAACAGTTTTTCGACAGTGTCTTCTCCCACTGTCTTGGTTTTCCGTATTGTGATTTCTGATTTCAATCCACCTGCAGGTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGGGTATGTATTCTTTAAACCACCTCACCTTGTAATGAAACAATACACACTAGAATTGATCAATGTGATAATTTTTGGCAGCCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATGTTTTTATTTTACTAT</genome_strand>
        <mrna_strand>T....................................................................................................................................................................................GCTGCAAGCTTGTAAAGTGATTGAGAGACACAATTACGAGCTAGCAATGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGG..............................................................................CCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGGCTTGCCAATGTTTTTATTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M176-F" ref_strand="+" ref_description="SGN-M176-F TG185-F [rflp_markers_forward]">
      <seq>tgtggtccttgtaaagtgattgctccaaagtttcaagagctatcgaagaaatataacgatgtggtctttctgaagctggactgtaaccaggacaacagggtatgtattctttaaaccacctcaccttgtaatgaaacaatacacgctagaattgatcaatgtgataatttttggcagccactagcaaaggaactaggcataaaggtggttccaacgttcaagattctgaagaacaataagatcgttaaagaagtcaccggagcaaaacttgatgatttagtagcagcaattgagggtgtgcgatcaagttaaatatttctctttttttttctatgacttcttctgtttaaatatgaagcagataatgtctatgaatgtcgtaaattagttctaactaaattcagtgtatagccgtggataatgaagtctcattagagaaaatggatgtgatgtacttgtcttgccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="-" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="36842" stop="35772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36542" g_stop="36072" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="-" ref_id="SGN-M176-F" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M176-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36542" e_stop="36072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGGGTATGTATTCTTTAAACCACCTCACCTTGTAATGAAACAATACACACTAGAATTGATCAATGTGATAATTTTTGGCAGCCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATG</genome_strand>
        <mrna_strand>TGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCGAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGGGTATGTATTCTTTAAACCACCTCACCTTGTAATGAAACAATACACGCTAGAATTGATCAATGTGATAATTTTTGGCAGCCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACGTTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTC-TC-TTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8848-2" ref_strand="+" ref_description="SGN-M8848-2 C2_At5g26360-2 [cosii_markers]">
      <seq>tgaagtgttctctctgccctaacccacccccctcttgcgaaccccacaatctacgaagaatctgatgttggtactggtgccggtctgtttgaagtgaaaaaaattggggatgagttctttacttttattgttgattgcaaggatccgaaagcatgtactatacttttaaggggtgcgagcaaagatctactgaatgaagtagaaagaaatctacaggatgccatgtctgtcgctagaaacatcatcaagtgtcctaagctagttcccggtggtggtgcaacagagttaactgtatctgccatgttaaagcagaaaagttcatccgttgaaggcatagaaaagtggccgtatgaagctgctgcaattgcttttgaagctataccacgaactttggctcagaactgtggtgtaaatgtgattcgtactatgaccgctcttcaaggaaagcatgcaaatggcgagaatgcatggataggcattgatggaaacactggtgagattaccgacatgaaagagcggaagatatgggattcctatgctgtaaaagcacaggcttttaaaactgccattgaagctgcttgcctacttctgagaattgatgacattgtgagtggaataaagaagaagcaagcccctggagcaggacaaggtccatcaaaaccaaaaatagacgaagaaggtgatgcagacaatgaccagctaattccggaatgaacatgatatactatgctgcaatggaaatgcttatgcatttgataaccacttggaagttttcatctacttcagtatagtctgcccttgactgattgcttgaactttttgtgcttgacatgtaacttctgctgtttttgactgctggcagttgttggttgtatttgaaatagattttgtttcagtttttggttttaaattaaatttgatgttgcaagtacaatgactaatcaatgtaggggtatcatgtttttcaaggatccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="39964" stop="85316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40264" g_stop="40321" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40322" i_stop="46234" i_length="5913">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46235" g_stop="46392" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="216" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46393" i_stop="46471" i_length="79">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46472" g_stop="46597" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="342" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46598" i_stop="46737" i_length="140">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46738" g_stop="46842" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="447" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46843" i_stop="46925" i_length="83">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46926" g_stop="47000" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="522" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47001" i_stop="47154" i_length="154">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47155" g_stop="47618" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="986" r_length="464" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47619" i_stop="47742" i_length="124">
            <donor d_prob="0.961" d_score="0.90"/>
            <acceptor a_prob="0.720" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47743" g_stop="47751" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="987" r_stop="995" r_length="9" r_score="0.444"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-M8848-2" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>995</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8848-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40264" e_stop="40321"/>
          <exon e_start="46235" e_stop="46392"/>
          <exon e_start="46472" e_stop="46597"/>
          <exon e_start="46738" e_stop="46842"/>
          <exon e_start="46926" e_stop="47000"/>
          <exon e_start="47155" e_stop="47618"/>
          <exon e_start="47743" e_stop="47751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTGTTCTCTCTGCCCTAACCCACCCCCCTCTTGCGAACCCCACAATCTACGAAGAACAGAAATCTCAACATTTCCATTCTAGGTCACCATTCAAATTAGCAAGATGCATGCTCCAGTTCTTGTTATGCGTAAGTTTTTTGTTTTTTTTCCCCCCTTTATTGGTCGTTTTCTCCACTTTTCCTTGTGTTTTTCGGATACCCATTTGCTTGTTTTACGTGAAAATGTGTCGAGTGGAGTAGAACGGATCTGGATGATTCATGTAGGGTGACCGGAACTAGTTTGGGATTGAGGTTTTAACTAGTTGATGGAGGGGAATTGAGAGATAGCGTTTATGTTAAGCCCAATCTTAACTTGTTGGGGTTTGAACTAATTGATTGATTGTCTCATTTTTGAAATGCTCGATCTGTTTGTGCAAGATGTAGTTTTCAGACATGGGTTGAGTAAGATGGGTTAAAGGGTGTTTGAGGATGTAGTAATTACTATGGTTTTGAGCTTTTCTGTTAGGGGTCGTTTGGTAGGGTGTACAAGAACAATGGTGAACAGAGTGTATAGCTAATGCTTGTATTAGTTATGCTAAGTTATTGCATATGTAGATATAGTTAGGGGTAGTTTGTTTGTCTTAGTTATGCTAAGTTATTTCATATGCTCAGCTTGGCTTGGTGTATTAAAAATAAGATGTGTTGCATGATTTCTAAAATAAATTATCTGTTTATATAAATACCCTCTACAAATATGGTAGACATGGAAAAGGTTTTGAGGGGAAATTTATCATGATAGTGCACACATTAAAGCCCTTGCATTGCTAATTCTGGATTTGTATGTACTAGTTATAGACAGGCTTAAAGAAATCTATCAAACATGGTATAAATGAATACAAAGCTAATGCATGTATTATTCTATCTGATGCATCCTTCCAAACGACCCCCTAGTCTTTTAGTTTCTAGGACCTATTTTATCAGTTGTTTTCATACAATGGTTGTATTGAGCAGAGGATTCTATGAAACGTGAGCAAGGTGGCAAGGTACGACGGGTAAATATCCAACTTAGTTATGTTAAGTTATTGAATATGCAGATTTTGATTAGGGGTAGTTTGGTAGGGTGTACAAGAACAGTGTTGAATATAGTGTATTAGTAATGTTTGTATTAGTTAGGCTAAGTTATTTCATATGCACAGTTTGGTTTGGTGTATTAAAAATGAGATGCTTTGCGTAATTTCTTAAAATAATTATTTGTTTATATAAATACCGTGCACAAATATGGTAGATGTGGAAAAGGTTTTGAGGGGAAATTTACCATGATAGTGCAAAGCATAAAACCCTTGCATAGTTCTATGATTTGTATGTACTAGTTATATATAAGCTTAAAGAATTGTACCAAACAAGGTATAAATAATAAACAAAGCTAATGCATGTACTATTCTATATGATGTGTCCTGCCAAACGACCCCTTAGTGTTTTAGTTTCTAGGACCCATTTTTTTAGTTGTTTTCTTACAATGGTTGTATTGAGCAGAGGATTCTATGAAACGCGAGCAAGGTGGCAAGGTTCAGCGGGCGAATATTCAGGCGGCAAAGGTACTTATTTGTCCCTTTTTTGGGTCTATTCTTAGAATAATAAGAGAACTCATAAATAGTTTGTATTTTTTTAAATATGTTTACTGGTATACTTGTTTTTTACTAGCTGTTAAATGGCATGTTTATTGTGAACTTCTAATTTATTCGTCGGACATCTAGATGAAGGATGATATTGTTGATCCTCTTGGAATTGCTACATTTTTGTGCCCACTAGTTTGAGTTCCTGCTGTTTCCTGCTATGCATTTATGGATCATTCACTTGCGTATTCAACCATGCTAAATTGGACTTGACTTAGCTGGTTGCTTTGTTGATATTATTCTTTGTCGTGGCTTTTGTCAGTAAAACTGCATAATGTGGTTATACACAGGTTGCACTAAAATGCACGTTGACTGGTGTTCCTGAAAATGATTACTGAGTTGAATATGTTCTTATATTGGGTCCTATTCTCATTATGTTGTCTAAGCAATCCTGCAAGCATTGCTATTGATAATTTTCCTTGGGGAGTATTAACATTATGCAAGAATGAATGCGATCCTTATAAAACACCAAGAACGATTGAGAATTTGTAGAAATCTTAGCCGTATTTTGGATGCTCTAGCAGTTTGAGGAGGCAAGTCTATTTGCTAGTTCAAGTGTCTTCAAGGCATTTCTTTGATTTGTTGCTCTCAACCTAAAACAAAAAACTGCATGGAAAGTTAAGCTAGAAACAGAATACATTGGACGAATAAGGGATTTGAATCCCTCTTATTGGGGTTCAGATCTGAGCAGAGGCAAAAAACTAGGTGACTTTTTTTCCATTTGTCCAAGGGAAGAGTCACCCAATACTTGTGCGGGTGGGAAGTAGGGTAGGGTATATTTGAGGCGAGGGCAAGCTTGTCTGGATACCACCCTCATAACAAAATAAAGTGGGAATGAGGAATCATATATTTCTCTGTATTTTCTCAGAATTTATAATTGTTTGTTACAGCTCATGTTAGTACGTATGTTAGTTCTCTTATGTTCTGTTTTGTTTCCAGGCTGTTGCTGACATTATCCGTACCACTTTGGGACCACGATCCATGTTAAAAATGCTCCTTGATGCTGCTGGAGGTAAACTATTCTGTACACATGTGAAACATGTCATGAGCGTATCCTCTTTCTTGGTAATTTTGGTGAAATTCATGAATGTTAATGAATAATTTCAGGAATTGTAGTAACCAATGATGGAAATGCAATTCTCCGTGAGCTAGATCTTGCTCATCCTGCAGCCAAGGTATATGCTTTCTCTCTCTCTCTCTCTCTCTCTCTGCTGACCCCTAGACATCTATGTTTGTGTGTGTTCCCTTGTTTGTTCATGGATTTTGTTTTGGTTGTGTTAATGTTTGATTACATGCCATGTTCTAATGAATATGTTTGTGCTCACATTGTTGTGTGCTTGCTTTCTTGTTTAAGCTTTCATATTGGTTATATCTTTCTGCTGCTGCAGTCAATGATTGAACTAAGCCGCACCCAAGATGAAGAGGTAGGAGACGGAACAACATCAGTAATTGTCCTTGGTATGGCTCTATTTAATTTTTTTGCATTAGGTGGATGGATTTTATCAGTTAAATTGTTGTCATGGAACTCATTAACTCACTCGCTCTTTATCTTAGGTATCTAACTGTTAATTGTGTAATCAATTGATACATATTGTCTAGCTGTTAATTGTTTGTGGGGTGTTCAGTAGTCTTAAGTTTCAGTTTTGCCTAAATTCTCTAGAAGGGCAGCCACTAGATTCCATGAAATGAACAGGCAAACACTTTAATAGAGCTCGGTCTGTAAGTATTTGGGATTTCATTTCAGTTTCACTATAGCAAAGTCCTTCCCCTAATTTAAATTTATTTGAAAAAGCATTTTACTTGATTCAAAACTCAAAACAGAGGATACAAATAAGAACATCAATGAGAAATGTAGGAGGAGCAGAAGGAGGAAGTCTGAGGCACACTGGAAGACAACCAAAAACCACGCCTATGTTTGATTGATGTGGACCGAGGCAGTTAGAGAGGAAGGTTATGGGCTAGAAATCTACCCTCATCACTTGCAAATAAAAACAAGGGGGTGGGGGTTAGAGAGGAAGTACGAGAAGAGGGACAGAGGCTCTTGTCTATTTTTTGAAGTTAAGCTGAACCAAATTTGTTTCAATGCCTCTAAAGTGAGACAAGGGGTGAATTGTTTTCAAGTTAATAAAAAATGTGTGCTATTCTGGCACGATAGTATGATGAGAAGTGTATAAAAGATCTCTAAGCTGGCTGCTTAGTTCTTCAATATTAATTATGTTACCAATATTTTTGAAGCTGGTGAGATGCTCCATGTTGCGGAAGCTTTTATTGACAAGAAGTATCATCCTACAGTAATATGTAGAGGTAACAGACGAGCCTTAGAATTTTATATCCTTCCGCCGAAGTTCTCTGAATTTAATATATGTACTTCTGTGACCAGCTTATGCCAAAGCTCTTGAAGATGCTGTTGCCGTGCTTGACAAAATTGCAATGACAGTTGATGTTGAAGATCGTAAGTTCCCTCTGCTTCTTACATTTCTGTCTTCTCATAACTCCACTATGAGTACTTCTATATTTTAGTAGTTCCATGCCTGGAGGTATTAGATAAATATAAAACACCTAGAGTTTTGGATGTCTTCTGTAGAACTTTTGGAGGTGCTTTTGGATAACTAGTTGAGTTTGCTATATGTTTTTAGTGTGGAAGAGAACATAATTTTGTGTGGTTGCTGGAATTGCAATTGCTAGGTCTTGATATGGGGTTGTAAGCAGAGAAACAGCATCATTATTTAAATAAATTCTTGAAATAACTTTTTGTTATGAACATCGAATTGAGTATATGGGAGTTACACATTTAACTAATTTTTGTGCTTTTCGTTTAACTTGATCCTTCTATCTTGGGTTTTGATTTTCTCATCGCTCCTTGCTCTTTTTCAAGTTTTAATTTTTTCGTGCTTATTTTTTACAGGAATAGATTTTATGCTATTATTGTAGCGTATATACGTTTTCTGAATGATTTTAACATGCATTATTACTCAAAATAATTGCTAACTGTGGCAGGTGAAACAATGTTGGGTTTGGTTAAGAGTTGCATCGGCACAAAATTTACTAGTCAATTTGGGGATTTAATTTCAGTAAGTACAATTTATTTCTATTACGCCCCACCCCCACCCCTACCCTCAAAGTGACATGAAATAAATTAAGAAACTTACATCTGGAGGTATTTGGAGCGAAAAAATAAATTGTTTCTTAATTTCGGATAGATGGCCTCTTCTTGAAGGTATGTACTATGTCTAACCTACAAGTGGGAATAACAGAAAGCAATCAAAGCATAATCTATATTTGTGCCTTGATATCTCATGAGTTCTATTACCTCACATCAAATGTTTTGAACATCAAGAAAGAAGACATGGATACATGACTCTTTTTTCCTCGAAAAGGGTAAATAATTAATTGTAAAGAAGCACATGCATACAGACTAGTTAACTACTAATGTTTCTTATGATTTTCTTCTAGTCATATAGATACTTGGTTCTTGTATTTCTTTCCATAGTGTGTTATTTATAATGACTTAAGAAGTTACTTCCCACAACTTGATTGATACTTTTGGGATTGAGATATAGTTCTCGGGATTTGTGTGTGTGTGTGTGTGTATTTTATGGAGCAACGTAAGGTGATGGAAATTCCATCTCTGATCTCTTGGTTCCAGCACCTCGACTTTGGTTTGGTAACCATGAGATCAGGTCTATACCAGGCAACTGGTTGATTGATATATGGATTTCAAATTAAAGAAGTCTTCCTTCAAGAAGTCCTTTACTGCAATAGGATTGAATAGTTCATGTTTTCAGTGTTCATTGTCTGACTTTATCATCAGGATTTAGCAATTGATGCCACAAGAATGGTTGGTGTGGAACTTGGCCAAGGGTTACGCGAGGTGGACATCAAGAAGTACATCAAGATTGAGAAGGTGCCTGGTGGGCAGTTGGAAGACTCTGTGGTGCTTAAAGGAGTAATGATGAACAAAGATGTAGTTGCCCCTGGCAAAATGAAGAGAAAGATTGTAAACCCTCGCATCATTCTACTTGATTGTCCCCTAGAGTACAAGAAAGGTGAGAACCAAACAAATGCAGAGCTCCTTAGAGAGGAGGATTGGACTGTCCTCTTGAAAATGGAAGAAGAGTACATTGAGAACATGTGCGCACAGATACTTAAATTCAAGCCGGATGTGGTTATTACTGAAAAGGGACTCAGTGATCTGGCATGCCATTATCTGTGCAAGGCTGGTGTCAGTGCAATCAGAAGGCTAAGGAAGACAGACAATAACAGAATTGCTAAGGCATGTGGGGCAGTTATTGTTAATAGACCTGATGAGTTGCAAGAATCTGATGTTGGTACTGGTGCCGGTCTGTTTGAAGTGAAAAAAATTGGGGATGAGTTCTTTACTTTTATTGTTGATTGCAAGGATCCGAAAGCATGTACTATACTTTTAAGGGGTGCGAGCAAAGATCTACTGAATGAAGTAGAAAGAAATCTACAGGTATCTCCTCAATTCCATAGGTTTAGCAGATGATAGCTATAAATCACACTATTTTGAGCTGCTCCTTGTGCTTTTTCAGGATGCCATGTCTGTCGCTAGAAACATCATCAAGTGTCCTAAGCTAGTTCCCGGTGGTGGTGCAACAGAGTTAACTGTATCTGCCATGTTAAAGCAGAAAAGTTCATCCGTTGAAGGCATAGAAAAGGTAAGTAAAGTTCGTCAAGTTATTACTCTTTATTTGCAGATTGAAACAAGTCACGAATATATGATCTTCTGAGACTCTTTGTGGAAATTGAAAAAAAGCCAACGGATGCTAATACTTTCATCCTTCTATCATATATGCAGTGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAGGTAGAAACTTTACTGTTTGAGGTGGATATGCAATATTCCTTAATTTGTGTTCATCTAAATTCTTTTCATTTATTTATCTATAGCATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAGGTATGATATTATATTCTTCCTTCCTACACTCCATGACCCCATCAGAACTAGGATAGGGGATGATTCATGACACACGTGTATGTGTAAGAGTCTGTAAAATGAAGAATGAAAATAGATATTTTTATTTGATTAAACAATCTTTATATATGTGCAGATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGGTTGTATTTGAAATAGATTTTGTTTCAGTTTTTGGTTTTAAATTAAATTTGATGTTGCAAGTACAATGACTAATCAATGTAGGGGTATCATGTTTTTCAAGGATCCAACAAATTGAAGGCCATACAAATCAAATTCAGGAAACTTATGTTGAGTCATGAACTCAATTCTAGCAAACAATAATGCATTATTAAGTGCAGAATGTCAAAATAAACCTTAATATTCACTAAGGGTTTATTTGTAGGAGGCACAA</genome_strand>
        <mrna_strand>TGAAGTGTTCTCTCTGCCCTAACCCACCCCCCTCTTGCGAACCCCACAATCTACGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTGATGTTGGTACTGGTGCCGGTCTGTTTGAAGTGAAAAAAATTGGGGATGAGTTCTTTACTTTTATTGTTGATTGCAAGGATCCGAAAGCATGTACTATACTTTTAAGGGGTGCGAGCAAAGATCTACTGAATGAAGTAGAAAGAAATCTACAG...............................................................................GATGCCATGTCTGTCGCTAGAAACATCATCAAGTGTCCTAAGCTAGTTCCCGGTGGTGGTGCAACAGAGTTAACTGTATCTGCCATGTTAAAGCAGAAAAGTTCATCCGTTGAAGGCATAGAAAAG............................................................................................................................................TGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAG...................................................................................CATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAG..........................................................................................................................................................ATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGGTTGTATTTGAAATAGATTTTGTTTCAGTTTTTGGTTTTAAATTAAATTTGATGTTGCAAGTACAATGACTAATCAATGTAGGGGTATCATGTTTTTCAAGGATCCAAAAAAAAAAAA............................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8848-3" ref_strand="+" ref_description="SGN-M8848-3 C2_At5g26360-3 [cosii_markers]">
      <seq>ggtgcctggtgggcagttggaagactctgtagtgcttaaaggagtaatgatgaacaaagatgtagttgcccctggcaaaatgaagagaaagattgtaaaccctcgcatcattctgcttgattgtcctctagagtacaagaaaggtgagaaccaaaccaatgcagagatccttagagaggaggattggactgtcctcttgaaaatggaagaagagtacattgagaacatatgcgcacagatacttaaattcaagccggacgtggttattactgaaaagggacttagtgatctggcatgccattatctgtgcaaggctggtgtcagtgcaatcagaaggctaaggaagacagacaataacagaattgctaaggcatgtggggcagttattgttaatagacctgatgagttgcaagaatctgatgttggtactggtgctggtctgtttgaggtgaaaaaaattggggatgagttctttacttttattgtcgattgcaaggatccgaaagcatgtactatacttttaaggggtgcgagcaaagatctactgaatgaagtagaaagaaatctacaggatgccatgtctgtcgctagaaacatcatcaagtgtcctaaactagttcccggtggtggtgcaacagagttaactgtatctgccatgttaaagcagaaaagttcatccgttgaaggcatagaaaagtggccgtatgaagctgctgcaattgcttttgaagctataccacgaactttggctcagaactgcggtgtgaatgtgattcgtactatgaccgctcttcaaggaaagcatgcaaatggcgagaatgcatggataggcattgacggaaacactggtgagattaccgacatgaaagagcggaagatatgggattcctatgcagtaaaagcacaggcctttaaaactgccattgaagctgcttgcctacttctgagaattgatgacattgtgagtggaataaagaagaagcaagcccctggagcaggaccatcgaaaccaaaaatagacgaagaaggtgatgcagacaatgaccagctaattccggaatgaacatgctactatgctgcagtggaatgcttctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0251J13-f4Wkn/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0251J13.2" temp_strand="+" temp_description="C05HBa0251J13.2  AC186292.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0251J13 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0251J13">
        <position start="45522" stop="47656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45822" g_stop="46392" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46393" i_stop="46471" i_length="79">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46472" g_stop="46597" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="697" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46598" i_stop="46737" i_length="140">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46738" g_stop="46842" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="802" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46843" i_stop="46925" i_length="83">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46926" g_stop="47000" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="803" r_stop="877" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47001" i_stop="47154" i_length="154">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47155" g_stop="47382" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="878" r_stop="1096" r_length="219" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0251J13.2" gen_strand="+" ref_id="SGN-M8848-3" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>1105</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0251J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8848-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45822" e_stop="46392"/>
          <exon e_start="46472" e_stop="46597"/>
          <exon e_start="46738" e_stop="46842"/>
          <exon e_start="46926" e_stop="47000"/>
          <exon e_start="47155" e_stop="47382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCCTGGTGGGCAGTTGGAAGACTCTGTGGTGCTTAAAGGAGTAATGATGAACAAAGATGTAGTTGCCCCTGGCAAAATGAAGAGAAAGATTGTAAACCCTCGCATCATTCTACTTGATTGTCCCCTAGAGTACAAGAAAGGTGAGAACCAAACAAATGCAGAGCTCCTTAGAGAGGAGGATTGGACTGTCCTCTTGAAAATGGAAGAAGAGTACATTGAGAACATGTGCGCACAGATACTTAAATTCAAGCCGGATGTGGTTATTACTGAAAAGGGACTCAGTGATCTGGCATGCCATTATCTGTGCAAGGCTGGTGTCAGTGCAATCAGAAGGCTAAGGAAGACAGACAATAACAGAATTGCTAAGGCATGTGGGGCAGTTATTGTTAATAGACCTGATGAGTTGCAAGAATCTGATGTTGGTACTGGTGCCGGTCTGTTTGAAGTGAAAAAAATTGGGGATGAGTTCTTTACTTTTATTGTTGATTGCAAGGATCCGAAAGCATGTACTATACTTTTAAGGGGTGCGAGCAAAGATCTACTGAATGAAGTAGAAAGAAATCTACAGGTATCTCCTCAATTCCATAGGTTTAGCAGATGATAGCTATAAATCACACTATTTTGAGCTGCTCCTTGTGCTTTTTCAGGATGCCATGTCTGTCGCTAGAAACATCATCAAGTGTCCTAAGCTAGTTCCCGGTGGTGGTGCAACAGAGTTAACTGTATCTGCCATGTTAAAGCAGAAAAGTTCATCCGTTGAAGGCATAGAAAAGGTAAGTAAAGTTCGTCAAGTTATTACTCTTTATTTGCAGATTGAAACAAGTCACGAATATATGATCTTCTGAGACTCTTTGTGGAAATTGAAAAAAAGCCAACGGATGCTAATACTTTCATCCTTCTATCATATATGCAGTGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAGGTAGAAACTTTACTGTTTGAGGTGGATATGCAATATTCCTTAATTTGTGTTCATCTAAATTCTTTTCATTTATTTATCTATAGCATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAGGTATGATATTATATTCTTCCTTCCTACACTCCATGACCCCATCAGAACTAGGATAGGGGATGATTCATGACACACGTGTATGTGTAAGAGTCTGTAAAATGAAGAATGAAAATAGATATTTTTATTTGATTAAACAATCTTTATATATGTGCAGATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGC</genome_strand>
        <mrna_strand>GGTGCCTGGTGGGCAGTTGGAAGACTCTGTAGTGCTTAAAGGAGTAATGATGAACAAAGATGTAGTTGCCCCTGGCAAAATGAAGAGAAAGATTGTAAACCCTCGCATCATTCTGCTTGATTGTCCTCTAGAGTACAAGAAAGGTGAGAACCAAACCAATGCAGAGATCCTTAGAGAGGAGGATTGGACTGTCCTCTTGAAAATGGAAGAAGAGTACATTGAGAACATATGCGCACAGATACTTAAATTCAAGCCGGACGTGGTTATTACTGAAAAGGGACTTAGTGATCTGGCATGCCATTATCTGTGCAAGGCTGGTGTCAGTGCAATCAGAAGGCTAAGGAAGACAGACAATAACAGAATTGCTAAGGCATGTGGGGCAGTTATTGTTAATAGACCTGATGAGTTGCAAGAATCTGATGTTGGTACTGGTGCTGGTCTGTTTGAGGTGAAAAAAATTGGGGATGAGTTCTTTACTTTTATTGTCGATTGCAAGGATCCGAAAGCATGTACTATACTTTTAAGGGGTGCGAGCAAAGATCTACTGAATGAAGTAGAAAGAAATCTACAG...............................................................................GATGCCATGTCTGTCGCTAGAAACATCATCAAGTGTCCTAAACTAGTTCCCGGTGGTGGTGCAACAGAGTTAACTGTATCTGCCATGTTAAAGCAGAAAAGTTCATCCGTTGAAGGCATAGAAAAG............................................................................................................................................TGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGCGGTGTGAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAG...................................................................................CATGCAAATGGCGAGAATGCATGGATAGGCATTGACGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAG..........................................................................................................................................................ATATGGGATTCCTATGCAGTAAAAGCACAGGCCTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGG---A---CCATCGAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATG--CTACTATGCTGCAGTGG-AATGCTTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="12311" PGL_stop="19553"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12311" e_stop="12686"/>
            <exon e_start="13831" e_stop="14042"/>
            <exon e_start="15665" e_stop="15946"/>
            <exon e_start="16484" e_stop="16606"/>
            <exon e_start="17594" e_stop="17744"/>
            <exon e_start="17869" e_stop="18098"/>
            <exon e_start="19071" e_stop="19107"/>
            <exon e_start="19211" e_stop="19553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12311" e_stop="12686" e_length="376"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12687" i_stop="13830" i_length="1144"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13831" e_stop="14042" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.981">
            <gDNA_intron_boundary i_start="14043" i_stop="15664" i_length="1622"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15665" e_stop="15946" e_length="282"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.992">
            <gDNA_intron_boundary i_start="15947" i_stop="16483" i_length="537"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16484" e_stop="16606" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="16607" i_stop="17593" i_length="987"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17594" e_stop="17744" e_length="151"/>
          </exon>
          <intron i_serial="5" don_prob="0.894" acc_prob="0.993">
            <gDNA_intron_boundary i_start="17745" i_stop="17868" i_length="124"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17869" e_stop="18098" e_length="230"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="18099" i_stop="19070" i_length="972"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19071" e_stop="19107" e_length="37"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="19108" i_stop="19210" i_length="103"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="19211" e_stop="19553" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12311" stop="12686"/>
              <exon start="13831" stop="14042"/>
              <exon start="15665" stop="15946"/>
              <exon start="16484" stop="16606"/>
              <exon start="17594" stop="17744"/>
              <exon start="17869" stop="18098"/>
              <exon start="19071" stop="19107"/>
              <exon start="19211" stop="19553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7502" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTGATTGACAATGAATTCCGCATCAATTTCCAGCATAGAGTTCAGAACTTTCTCGAATCTTCCGTCACGCCGAACTGCATACTTAACTCACCGGCGCGTAGCCGAGACGCTCCATCAAAGTGCTTCTTCATTGCCGGAAAGAGTAGGTAGCAGCAGTAGCAAAGCTGGAAGGAAATCATTTATTCGCTACACTGTCTCTGCTAGCTATGGTGATAAGGAATCGGGTTCAGTTAACTCTAATGAGTTTACTTCTCCAGCGAAGGCACTCCGGAAACTATTAGAATCGCCGGGAGTTCATCAAGGACCAGCTTGTTTCGATGCTCTCAGTGCTAAGCTTGTTGAACGAGCTGGGTTCGATTTCTGCTTTACAACTG : GTTTTGGAATATCTGCTGCACGGTTAGGACTGCCAGATGCAGGACTAATTTCTTACGGAGAGATGGTGGCTCAAGGTCTAGAGATCACACAAGCAGTGTCCATACCAGTAATTGGGGATGGAGATAATGGATATGGCAACGCCATGAATGTCAAGAGAACTGTGAAAGGATATATTAGAGCAGGTTTCGGGGGAATAATCCTTGAAGATCAG : GTTTCTCCCAAAGCATGTGGTCACACACGTGGCAGGAAAGTTGTTTCTCGGGAGGAAGCAATCATGAGAATAAAAGCGGCTGTTGATGCTCGAAAAGAAAGTGGATCTGACATCGTGATTGTGGCACGTACTGATGCACGTCAAGCAGTCTCCTTTGAAGAAGCCATTTGGCGGGCACGTGCTCTTGCTGATGCTGGAGCTGATGTTCTGTTCATAGATGCTCTTGCTTCCAAAGAAGAGATGAAAGCTTTCTGTGATGTCTATCCACTGGTTCCGAAGCTT : GCAAATATGCTTGAAGGTGGTGGTAAAACACCAATATTCACTCCAATTGAACTTGAGGAACTTGGATACAAACTGGTGGCATATCCACTTTCCTTGATTGGGGTATCAATCGGTGCAATGCAG : GATGCATTGTCTGCCATTAAAGGAGGTCGGATACCATCGCCGGGTAGCATGCCTTCATTTGAAGAGCTAAAAGAGATCCTAGGTTTCAATACCTACTATGAAGAAGAGAAGCGTTATGCAACAACAAGCAGTCAACTTCCTTCTCGTAAAG : GTGATTTCTCATCAAACAGCAATGAGTATGGTGTTCAACCCGGCATCCAAGCTGATAGAGTGCAGAGGACTCAAATACCCGAGAATCCTGTTGAGGTATTGATACCTGAGGTGTATGACAGATTTTCTGGTGAGGGTAAGAAAGGAAATTTCTCAATGGCCTGGTCTCGGAAATTGAGAGTCAAGATTACTGGAAAAGATGGATTTGAAAAACTAGATATCAGAATTCCT : GCTGGATTTTTGGAAGGAATCACAAACATAGTTCCAG : CTTTGGTAGGTGTAAACATCAAGTCTCTGTTGGATGAGGCAACTTTAGAAGAGGGTGGGAAACAATTGTTGGATTTTCAGGATACAATGGGTGACAGGATACAAGTTATTTTGGAGTAAAGGAGATCTTGCTTCTTATTCCTGTATTTTGATGAATGAATATTATATGGCAAATGATGTACAATCCCTAGCTTAGCTTGGCCCCTCAGATTTGGTCTAAATGGAAGAGCATAATGCATATGAAATAATGTGTGGGTTAAGCGCATGTTACAAAAGAGTATGGTATTGTTTTCTGCATGTAATCCCCTAAAATATTGATCAATAATATAATTTAGTTAAAATAT</gDNA_template>
            <first_frame> L  *  L  T  M  N  S  A  S  I  S  S  I  E  F  R  T  F  S  N  L  P  S  R  R  T  A  Y  L  T  H  R  R  V  A  E  T  L  H  Q  S  A  S  S  L  P  E  R  V  G  S  S  S  S  K  A  G  R  K  S  F  I  R  Y  T  V  S  A  S  Y  G  D  K  E  S  G  S  V  N  S  N  E  F  T  S  P  A  K  A  L  R  K  L  L  E  S  P  G  V  H  Q  G  P  A  C  F  D  A  L  S  A  K  L  V  E  R  A  G  F  D  F  C  F  T  T   : G  F  G  I  S  A  A  R  L  G  L  P  D  A  G  L  I  S  Y  G  E  M  V  A  Q  G  L  E  I  T  Q  A  V  S  I  P  V  I  G  D  G  D  N  G  Y  G  N  A  M  N  V  K  R  T  V  K  G  Y  I  R  A  G  F  G  G  I  I  L  E  D  Q  :  V  S  P  K  A  C  G  H  T  R  G  R  K  V  V  S  R  E  E  A  I  M  R  I  K  A  A  V  D  A  R  K  E  S  G  S  D  I  V  I  V  A  R  T  D  A  R  Q  A  V  S  F  E  E  A  I  W  R  A  R  A  L  A  D  A  G  A  D  V  L  F  I  D  A  L  A  S  K  E  E  M  K  A  F  C  D  V  Y  P  L  V  P  K  L  :  A  N  M  L  E  G  G  G  K  T  P  I  F  T  P  I  E  L  E  E  L  G  Y  K  L  V  A  Y  P  L  S  L  I  G  V  S  I  G  A  M  Q  :  D  A  L  S  A  I  K  G  G  R  I  P  S  P  G  S  M  P  S  F  E  E  L  K  E  I  L  G  F  N  T  Y  Y  E  E  E  K  R  Y  A  T  T  S  S  Q  L  P  S  R  K   : G  D  F  S  S  N  S  N  E  Y  G  V  Q  P  G  I  Q  A  D  R  V  Q  R  T  Q  I  P  E  N  P  V  E  V  L  I  P  E  V  Y  D  R  F  S  G  E  G  K  K  G  N  F  S  M  A  W  S  R  K  L  R  V  K  I  T  G  K  D  G  F  E  K  L  D  I  R  I  P  :  A  G  F  L  E  G  I  T  N  I  V  P   : A  L  V  G  V  N  I  K  S  L  L  D  E  A  T  L  E  E  G  G  K  Q  L  L  D  F  Q  D  T  M  G  D  R  I  Q  V  I  L  E  *  R  R  S  C  F  L  F  L  Y  F  D  E  *  I  L  Y  G  K  *  C  T  I  P  S  L  A  W  P  L  R  F  G  L  N  G  R  A  *  C  I  *  N  N  V  W  V  K  R  M  L  Q  K  S  M  V  L  F  S  A  C  N  P  L  K  Y  *  S  I  I  *  F  S  *  N   </first_frame>
            <second_frame>  C  D  *  Q  *  I  P  H  Q  F  P  A  *  S  S  E  L  S  R  I  F  R  H  A  E  L  H  T  *  L  T  G  A  *  P  R  R  S  I  K  V  L  L  H  C  R  K  E  *  V  A  A  V  A  K  L  E  G  N  H  L  F  A  T  L  S  L  L  A  M  V  I  R  N  R  V  Q  L  T  L  M  S  L  L  L  Q  R  R  H  S  G  N  Y  *  N  R  R  E  F  I  K  D  Q  L  V  S  M  L  S  V  L  S  L  L  N  E  L  G  S  I  S  A  L  Q  L  :  V  L  E  Y  L  L  H  G  *  D  C  Q  M  Q  D  *  F  L  T  E  R  W  W  L  K  V  *  R  S  H  K  Q  C  P  Y  Q  *  L  G  M  E  I  M  D  M  A  T  P  *  M  S  R  E  L  *  K  D  I  L  E  Q  V  S  G  E  *  S  L  K  I  R :   F  L  P  K  H  V  V  T  H  V  A  G  K  L  F  L  G  R  K  Q  S  *  E  *  K  R  L  L  M  L  E  K  K  V  D  L  T  S  *  L  W  H  V  L  M  H  V  K  Q  S  P  L  K  K  P  F  G  G  H  V  L  L  L  M  L  E  L  M  F  C  S  *  M  L  L  L  P  K  K  R  *  K  L  S  V  M  S  I  H  W  F  R  S  L :   Q  I  C  L  K  V  V  V  K  H  Q  Y  S  L  Q  L  N  L  R  N  L  D  T  N  W  W  H  I  H  F  P  *  L  G  Y  Q  S  V  Q  C  R :   M  H  C  L  P  L  K  E  V  G  Y  H  R  R  V  A  C  L  H  L  K  S  *  K  R  S  *  V  S  I  P  T  M  K  K  R  S  V  M  Q  Q  Q  A  V  N  F  L  L  V  K  :  V  I  S  H  Q  T  A  M  S  M  V  F  N  P  A  S  K  L  I  E  C  R  G  L  K  Y  P  R  I  L  L  R  Y  *  Y  L  R  C  M  T  D  F  L  V  R  V  R  K  E  I  S  Q  W  P  G  L  G  N  *  E  S  R  L  L  E  K  M  D  L  K  N  *  I  S  E  F  L :   L  D  F  W  K  E  S  Q  T  *  F  Q  :  L  W  *  V  *  T  S  S  L  C  W  M  R  Q  L  *  K  R  V  G  N  N  C  W  I  F  R  I  Q  W  V  T  G  Y  K  L  F  W  S  K  G  D  L  A  S  Y  S  C  I  L  M  N  E  Y  Y  M  A  N  D  V  Q  S  L  A  *  L  G  P  S  D  L  V  *  M  E  E  H  N  A  Y  E  I  M  C  G  L  S  A  C  Y  K  R  V  W  Y  C  F  L  H  V  I  P  *  N  I  D  Q  *  Y  N  L  V  K  I  </second_frame>
            <third_frame>   V  I  D  N  E  F  R  I  N  F  Q  H  R  V  Q  N  F  L  E  S  S  V  T  P  N  C  I  L  N  S  P  A  R  S  R  D  A  P  S  K  C  F  F  I  A  G  K  S  R  *  Q  Q  *  Q  S  W  K  E  I  I  Y  S  L  H  C  L  C  *  L  W  *  *  G  I  G  F  S  *  L  *  *  V  Y  F  S  S  E  G  T  P  E  T  I  R  I  A  G  S  S  S  R  T  S  L  F  R  C  S  Q  C  *  A  C  *  T  S  W  V  R  F  L  L  Y  N  W :   F  W  N  I  C  C  T  V  R  T  A  R  C  R  T  N  F  L  R  R  D  G  G  S  R  S  R  D  H  T  S  S  V  H  T  S  N  W  G  W  R  *  W  I  W  Q  R  H  E  C  Q  E  N  C  E  R  I  Y  *  S  R  F  R  G  N  N  P  *  R  S   : G  F  S  Q  S  M  W  S  H  T  W  Q  E  S  C  F  S  G  G  S  N  H  E  N  K  S  G  C  *  C  S  K  R  K  W  I  *  H  R  D  C  G  T  Y  *  C  T  S  S  S  L  L  *  R  S  H  L  A  G  T  C  S  C  *  C  W  S  *  C  S  V  H  R  C  S  C  F  Q  R  R  D  E  S  F  L  *  C  L  S  T  G  S  E  A   : C  K  Y  A  *  R  W  W  *  N  T  N  I  H  S  N  *  T  *  G  T  W  I  Q  T  G  G  I  S  T  F  L  D  W  G  I  N  R  C  N  A   : G  C  I  V  C  H  *  R  R  S  D  T  I  A  G  *  H  A  F  I  *  R  A  K  R  D  P  R  F  Q  Y  L  L  *  R  R  E  A  L  C  N  N  K  Q  S  T  S  F  S  *  R :   *  F  L  I  K  Q  Q  *  V  W  C  S  T  R  H  P  S  *  *  S  A  E  D  S  N  T  R  E  S  C  *  G  I  D  T  *  G  V  *  Q  I  F  W  *  G  *  E  R  K  F  L  N  G  L  V  S  E  I  E  S  Q  D  Y  W  K  R  W  I  *  K  T  R  Y  Q  N  S   : C  W  I  F  G  R  N  H  K  H  S  S  S :   F  G  R  C  K  H  Q  V  S  V  G  *  G  N  F  R  R  G  W  E  T  I  V  G  F  S  G  Y  N  G  *  Q  D  T  S  Y  F  G  V  K  E  I  L  L  L  I  P  V  F  *  *  M  N  I  I  W  Q  M  M  Y  N  P  *  L  S  L  A  P  Q  I  W  S  K  W  K  S  I  M  H  M  K  *  C  V  G  *  A  H  V  T  K  E  Y  G  I  V  F  C  M  *  S  P  K  I  L  I  N  N  I  I  *  L  K  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12317" stop="12686"/>
                    <exon start="13831" stop="14042"/>
                    <exon start="15665" stop="15946"/>
                    <exon start="16484" stop="16606"/>
                    <exon start="17594" stop="17744"/>
                    <exon start="17869" stop="18098"/>
                    <exon start="19071" stop="19107"/>
                    <exon start="19211" stop="19329"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1521</number_coding_nucleotides>
                  <number_encoded_amino_acids>507</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTMNSASISSIEFRTFSNLPSRRTAYLTHRRVAETLHQSASSLPERVGSSSSKAGRKSFIRYTVSASYGDKESGSVNSNEFTSPAKALRKLLESPGVHQGPACFDALSAKLVERAGFDFCFTTGFGISAARLGLPDAGLISYGEMVAQGLEITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIRAGFGGIILEDQVSPKACGHTRGRKVVSREEAIMRIKAAVDARKESGSDIVIVARTDARQAVSFEEAIWRARALADAGADVLFIDALASKEEMKAFCDVYPLVPKLANMLEGGGKTPIFTPIELEELGYKLVAYPLSLIGVSIGAMQDALSAIKGGRIPSPGSMPSFEELKEILGFNTYYEEEKRYATTSSQLPSRKGDFSSNSNEYGVQPGIQADRVQRTQIPENPVEVLIPEVYDRFSGEGKKGNFSMAWSRKLRVKITGKDGFEKLDIRIPAGFLEGITNIVPALVGVNIKSLLDEATLEEGGKQLLDFQDTMGDRIQVILE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="35519" PGL_stop="36017"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35519" e_stop="36017"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="35519" e_stop="36017" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35519" stop="36017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M176-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCTGTTTGTGATCAAGCCATAGAACCGTTCGAGTAAGACCCGGGAAACAATATGCAGAGGAACTTGGCAAGTGTTTGTTTACCTTGGGCTTATGATATTTTGCAGTATTTCAGTTTCAGTGAGTATGTTTGCAATGACTGGTAGCGTGATGGAAATTGGAATAGACGATTCTGGTTAAAACTCATTAGGAGAGTTTAGTGTTTAATCTGAGGTATTCTTTGGCATTTTATTGTGGGATTCTAGCTTACTCATTTTTTCCTTTTTCAGTTTGACATATTTATGTGAGGTTTGTACCTCGATAACAATCTCATCGCATTATGATAAGGATTGTATGCAGTTTTGATTATTTAGCCCCTGGCCAATACGATACTTATAATTGCTATTTTATGTGAAATAGTTTCAATTTACTTGACTCAACATAACTTGGAACTACTAGAGTTCTCATTTTCCACACATATGTTATGTTAGAATCGATGTATATCGATTATAAGATGTGA</gDNA_template>
            <first_frame> P  L  F  V  I  K  P  *  N  R  S  S  K  T  R  E  T  I  C  R  G  T  W  Q  V  F  V  Y  L  G  L  M  I  F  C  S  I  S  V  S  V  S  M  F  A  M  T  G  S  V  M  E  I  G  I  D  D  S  G  *  N  S  L  G  E  F  S  V  *  S  E  V  F  F  G  I  L  L  W  D  S  S  L  L  I  F  S  F  F  S  L  T  Y  L  C  E  V  C  T  S  I  T  I  S  S  H  Y  D  K  D  C  M  Q  F  *  L  F  S  P  W  P  I  R  Y  L  *  L  L  F  Y  V  K  *  F  Q  F  T  *  L  N  I  T  W  N  Y  *  S  S  H  F  P  H  I  C  Y  V  R  I  D  V  Y  R  L  *  D  V  </first_frame>
            <second_frame>  L  C  L  *  S  S  H  R  T  V  R  V  R  P  G  K  Q  Y  A  E  E  L  G  K  C  L  F  T  L  G  L  *  Y  F  A  V  F  Q  F  Q  *  V  C  L  Q  *  L  V  A  *  W  K  L  E  *  T  I  L  V  K  T  H  *  E  S  L  V  F  N  L  R  Y  S  L  A  F  Y  C  G  I  L  A  Y  S  F  F  P  F  S  V  *  H  I  Y  V  R  F  V  P  R  *  Q  S  H  R  I  M  I  R  I  V  C  S  F  D  Y  L  A  P  G  Q  Y  D  T  Y  N  C  Y  F  M  *  N  S  F  N  L  L  D  S  T  *  L  G  T  T  R  V  L  I  F  H  T  Y  V  M  L  E  S  M  Y  I  D  Y  K  M  * </second_frame>
            <third_frame>   S  V  C  D  Q  A  I  E  P  F  E  *  D  P  G  N  N  M  Q  R  N  L  A  S  V  C  L  P  W  A  Y  D  I  L  Q  Y  F  S  F  S  E  Y  V  C  N  D  W  *  R  D  G  N  W  N  R  R  F  W  L  K  L  I  R  R  V  *  C  L  I  *  G  I  L  W  H  F  I  V  G  F  *  L  T  H  F  F  L  F  Q  F  D  I  F  M  *  G  L  Y  L  D  N  N  L  I  A  L  *  *  G  L  Y  A  V  L  I  I  *  P  L  A  N  T  I  L  I  I  A  I  L  C  E  I  V  S  I  Y  L  T  Q  H  N  L  E  L  L  E  F  S  F  S  T  H  M  L  C  *  N  R  C  I  S  I  I  R  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0251J13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="36724" PGL_stop="36057"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36724" e_stop="36724"/>
            <exon e_start="36543" e_stop="36444"/>
            <exon e_start="36365" e_stop="36057"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="0.810"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36724" e_stop="36724" e_length="1"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.992">
            <gDNA_intron_boundary i_start="36723" i_stop="36544" i_length="180"/>
          </intron>
          <exon e_serial="2" e_score="0.810">
            <gDNA_exon_boundary e_start="36543" e_stop="36444" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="36443" i_stop="36366" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="36365" e_stop="36057" e_length="309"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36724" stop="36724"/>
              <exon start="36543" stop="36444"/>
              <exon start="36365" stop="36057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M3087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>T : GTGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGG : CCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATGTTTTTATTTTACTAT</gDNA_template>
            <first_frame>  : C  V  V  L  V  K  *  L  L  Q  S  F  K  S  Y  Q  R  N  I  T  M  W  S  F  *  S  W  T  V  T  R  T  T  G :   H  *  Q  R  N  *  A  *  R  W  F  Q  H  S  R  F  *  R  T  I  R  S  L  K  K  S  P  E  Q  N  L  M  I  *  *  Q  Q  L  R  V  C  D  Q  V  K  Y  F  F  F  F  F  S  M  T  S  S  V  *  I  *  S  R  *  C  L  *  M  S  *  I  S  S  N  *  I  Q  C  I  A  V  D  N  E  V  S  L  E  K  M  D  V  M  Y  L  S  C  Q  C  F  Y  F  T   </first_frame>
            <second_frame>  :  V  W  S  L  *  S  D  C  S  K  V  S  R  A  I  K  E  I  *  R  C  G  L  S  E  A  G  L  *  P  G  Q  Q   : A  T  S  K  G  T  R  H  K  G  G  S  N  I  Q  D  S  E  E  Q  *  D  R  *  R  S  H  R  S  K  T  *  *  F  S  S  S  N  *  G  C  A  I  K  L  N  I  S  S  F  F  F  L  *  L  L  L  F  K  Y  E  A  D  N  V  Y  E  C  R  K  L  V  L  T  K  F  S  V  *  P  W  I  M  K  S  H  *  R  K  W  M  *  C  T  C  L  A  N  V  F  I  L  L  </second_frame>
            <third_frame>  :   C  G  P  C  K  V  I  A  P  K  F  Q  E  L  S  K  K  Y  N  D  V  V  F  L  K  L  D  C  N  Q  D  N  R  :  P  L  A  K  E  L  G  I  K  V  V  P  T  F  K  I  L  K  N  N  K  I  V  K  E  V  T  G  A  K  L  D  D  L  V  A  A  I  E  G  V  R  S  S  *  I  F  L  L  F  F  F  Y  D  F  F  C  L  N  M  K  Q  I  M  S  M  N  V  V  N  *  F  *  L  N  S  V  Y  S  R  G  *  *  S  L  I  R  E  N  G  C  D  V  L  V  L  P  M  F  L  F  Y  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36542" stop="36444"/>
                    <exon start="36365" stop="36231"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGPCKVIAPKFQELSKKYNDVVFLKLDCNQDNRPLAKELGIKVVPTFKILKNNKIVKEVTGAKLDDLVAAIEGVRSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36542" e_stop="36072"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="36542" e_stop="36072" e_length="471"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36542" stop="36072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M176-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGGTCCTTGTAAAGTGATTGCTCCAAAGTTTCAAGAGCTATCAAAGAAATATAACGATGTGGTCTTTCTGAAGCTGGACTGTAACCAGGACAACAGGGTATGTATTCTTTAAACCACCTCACCTTGTAATGAAACAATACACACTAGAATTGATCAATGTGATAATTTTTGGCAGCCACTAGCAAAGGAACTAGGCATAAAGGTGGTTCCAACATTCAAGATTCTGAAGAACAATAAGATCGTTAAAGAAGTCACCGGAGCAAAACTTGATGATTTAGTAGCAGCAATTGAGGGTGTGCGATCAAGTTAAATATTTCTTCTTTTTTTTTTCTATGACTTCTTCTGTTTAAATATGAAGCAGATAATGTCTATGAATGTCGTAAATTAGTTCTAACTAAATTCAGTGTATAGCCGTGGATAATGAAGTCTCATTAGAGAAAATGGATGTGATGTACTTGTCTTGCCAATG</gDNA_template>
            <first_frame> C  G  P  C  K  V  I  A  P  K  F  Q  E  L  S  K  K  Y  N  D  V  V  F  L  K  L  D  C  N  Q  D  N  R  V  C  I  L  *  T  T  S  P  C  N  E  T  I  H  T  R  I  D  Q  C  D  N  F  W  Q  P  L  A  K  E  L  G  I  K  V  V  P  T  F  K  I  L  K  N  N  K  I  V  K  E  V  T  G  A  K  L  D  D  L  V  A  A  I  E  G  V  R  S  S  *  I  F  L  L  F  F  F  Y  D  F  F  C  L  N  M  K  Q  I  M  S  M  N  V  V  N  *  F  *  L  N  S  V  Y  S  R  G  *  *  S  L  I  R  E  N  G  C  D  V  L  V  L  P  M </first_frame>
            <second_frame>  V  V  L  V  K  *  L  L  Q  S  F  K  S  Y  Q  R  N  I  T  M  W  S  F  *  S  W  T  V  T  R  T  T  G  Y  V  F  F  K  P  P  H  L  V  M  K  Q  Y  T  L  E  L  I  N  V  I  I  F  G  S  H  *  Q  R  N  *  A  *  R  W  F  Q  H  S  R  F  *  R  T  I  R  S  L  K  K  S  P  E  Q  N  L  M  I  *  *  Q  Q  L  R  V  C  D  Q  V  K  Y  F  F  F  F  F  S  M  T  S  S  V  *  I  *  S  R  *  C  L  *  M  S  *  I  S  S  N  *  I  Q  C  I  A  V  D  N  E  V  S  L  E  K  M  D  V  M  Y  L  S  C  Q   </second_frame>
            <third_frame>   W  S  L  *  S  D  C  S  K  V  S  R  A  I  K  E  I  *  R  C  G  L  S  E  A  G  L  *  P  G  Q  Q  G  M  Y  S  L  N  H  L  T  L  *  *  N  N  T  H  *  N  *  S  M  *  *  F  L  A  A  T  S  K  G  T  R  H  K  G  G  S  N  I  Q  D  S  E  E  Q  *  D  R  *  R  S  H  R  S  K  T  *  *  F  S  S  S  N  *  G  C  A  I  K  L  N  I  S  S  F  F  F  L  *  L  L  L  F  K  Y  E  A  D  N  V  Y  E  C  R  K  L  V  L  T  K  F  S  V  *  P  W  I  M  K  S  H  *  R  K  W  M  *  C  T  C  L  A  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36428" stop="36231"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTSPCNETIHTRIDQCDNFWQPLAKELGIKVVPTFKILKNNKIVKEVTGAKLDDLVAAIEGVRSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="40264" PGL_stop="47751"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40264" e_stop="40321"/>
            <exon e_start="46235" e_stop="46392"/>
            <exon e_start="46472" e_stop="46597"/>
            <exon e_start="46738" e_stop="46842"/>
            <exon e_start="46926" e_stop="47000"/>
            <exon e_start="47155" e_stop="47618"/>
            <exon e_start="47743" e_stop="47751"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.821" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.720" e_score="0.989"/>
          <exon-only e_score="0.444"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40264" e_stop="40321" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40322" i_stop="46234" i_length="5913"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46235" e_stop="46392" e_length="158"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.882">
            <gDNA_intron_boundary i_start="46393" i_stop="46471" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46472" e_stop="46597" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.821">
            <gDNA_intron_boundary i_start="46598" i_stop="46737" i_length="140"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46738" e_stop="46842" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46843" i_stop="46925" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46926" e_stop="47000" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="47001" i_stop="47154" i_length="154"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="47155" e_stop="47618" e_length="464"/>
          </exon>
          <intron i_serial="6" don_prob="0.961" acc_prob="0.720">
            <gDNA_intron_boundary i_start="47619" i_stop="47742" i_length="124"/>
          </intron>
          <exon e_serial="7" e_score="0.444">
            <gDNA_exon_boundary e_start="47743" e_stop="47751" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40264" stop="40321"/>
              <exon start="46235" stop="46392"/>
              <exon start="46472" stop="46597"/>
              <exon start="46738" stop="46842"/>
              <exon start="46926" stop="47000"/>
              <exon start="47155" stop="47618"/>
              <exon start="47743" stop="47751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8848-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAGTGTTCTCTCTGCCCTAACCCACCCCCCTCTTGCGAACCCCACAATCTACGAAG : AATCTGATGTTGGTACTGGTGCCGGTCTGTTTGAAGTGAAAAAAATTGGGGATGAGTTCTTTACTTTTATTGTTGATTGCAAGGATCCGAAAGCATGTACTATACTTTTAAGGGGTGCGAGCAAAGATCTACTGAATGAAGTAGAAAGAAATCTACAG : GATGCCATGTCTGTCGCTAGAAACATCATCAAGTGTCCTAAGCTAGTTCCCGGTGGTGGTGCAACAGAGTTAACTGTATCTGCCATGTTAAAGCAGAAAAGTTCATCCGTTGAAGGCATAGAAAAG : TGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAG : CATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAG : ATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGCATTTGATAACCACTTGGAAGTTTTCATCTACTTCAGTATAGTCTGCCCTTGACTGATTGCTTGAACTTTTTGTGCTTGACATGTAACTTCTGCTGTTTTTGACTGCTGGCAGTTGTTGGTTGTATTTGAAATAGATTTTGTTTCAGTTTTTGGTTTTAAATTAAATTTGATGTTGCAAGTACAATGACTAATCAATGTAGGGGTATCATGTTTTTCAAGGATCCAACAAATTGAAG : GAGGCACAA</gDNA_template>
            <first_frame> *  S  V  L  S  A  L  T  H  P  P  L  A  N  P  T  I  Y  E   : E  S  D  V  G  T  G  A  G  L  F  E  V  K  K  I  G  D  E  F  F  T  F  I  V  D  C  K  D  P  K  A  C  T  I  L  L  R  G  A  S  K  D  L  L  N  E  V  E  R  N  L  Q  :  D  A  M  S  V  A  R  N  I  I  K  C  P  K  L  V  P  G  G  G  A  T  E  L  T  V  S  A  M  L  K  Q  K  S  S  S  V  E  G  I  E  K  :  W  P  Y  E  A  A  A  I  A  F  E  A  I  P  R  T  L  A  Q  N  C  G  V  N  V  I  R  T  M  T  A  L  Q  G  K  :  H  A  N  G  E  N  A  W  I  G  I  D  G  N  T  G  E  I  T  D  M  K  E  R  K  :  I  W  D  S  Y  A  V  K  A  Q  A  F  K  T  A  I  E  A  A  C  L  L  L  R  I  D  D  I  V  S  G  I  K  K  K  Q  A  P  G  A  G  Q  G  P  S  K  P  K  I  D  E  E  G  D  A  D  N  D  Q  L  I  P  E  *  T  *  Y  T  M  L  Q  W  K  C  L  C  I  *  *  P  L  G  S  F  H  L  L  Q  Y  S  L  P  L  T  D  C  L  N  F  L  C  L  T  C  N  F  C  C  F  *  L  L  A  V  V  G  C  I  *  N  R  F  C  F  S  F  W  F  *  I  K  F  D  V  A  S  T  M  T  N  Q  C  R  G  I  M  F  F  K  D  P  T  N  *  R :   R  H   </first_frame>
            <second_frame>  E  V  F  S  L  P  *  P  T  P  L  L  R  T  P  Q  S  T  K  :  N  L  M  L  V  L  V  P  V  C  L  K  *  K  K  L  G  M  S  S  L  L  L  L  L  I  A  R  I  R  K  H  V  L  Y  F  *  G  V  R  A  K  I  Y  *  M  K  *  K  E  I  Y  R :   M  P  C  L  S  L  E  T  S  S  S  V  L  S  *  F  P  V  V  V  Q  Q  S  *  L  Y  L  P  C  *  S  R  K  V  H  P  L  K  A  *  K  S :   G  R  M  K  L  L  Q  L  L  L  K  L  Y  H  E  L  W  L  R  T  V  V  *  M  *  F  V  L  *  P  L  F  K  E  S :   M  Q  M  A  R  M  H  G  *  A  L  M  E  T  L  V  R  L  P  T  *  K  S  G  R :   Y  G  I  P  M  L  *  K  H  R  L  L  K  L  P  L  K  L  L  A  Y  F  *  E  L  M  T  L  *  V  E  *  R  R  S  K  P  L  E  Q  D  K  V  H  Q  N  Q  K  *  T  K  K  V  M  Q  T  M  T  S  *  F  R  N  E  H  D  I  L  C  C  N  G  N  A  Y  A  F  D  N  H  L  E  V  F  I  Y  F  S  I  V  C  P  *  L  I  A  *  T  F  C  A  *  H  V  T  S  A  V  F  D  C  W  Q  L  L  V  V  F  E  I  D  F  V  S  V  F  G  F  K  L  N  L  M  L  Q  V  Q  *  L  I  N  V  G  V  S  C  F  S  R  I  Q  Q  I  E   : G  G  T  </second_frame>
            <third_frame>   K  C  S  L  C  P  N  P  P  P  S  C  E  P  H  N  L  R  R :   I  *  C  W  Y  W  C  R  S  V  *  S  E  K  N  W  G  *  V  L  Y  F  Y  C  *  L  Q  G  S  E  S  M  Y  Y  T  F  K  G  C  E  Q  R  S  T  E  *  S  R  K  K  S  T   : G  C  H  V  C  R  *  K  H  H  Q  V  S  *  A  S  S  R  W  W  C  N  R  V  N  C  I  C  H  V  K  A  E  K  F  I  R  *  R  H  R  K   : V  A  V  *  S  C  C  N  C  F  *  S  Y  T  T  N  F  G  S  E  L  W  C  K  C  D  S  Y  Y  D  R  S  S  R  K   : A  C  K  W  R  E  C  M  D  R  H  *  W  K  H  W  *  D  Y  R  H  E  R  A  E   : D  M  G  F  L  C  C  K  S  T  G  F  *  N  C  H  *  S  C  L  P  T  S  E  N  *  *  H  C  E  W  N  K  E  E  A  S  P  W  S  R  T  R  S  I  K  T  K  N  R  R  R  R  *  C  R  Q  *  P  A  N  S  G  M  N  M  I  Y  Y  A  A  M  E  M  L  M  H  L  I  T  T  W  K  F  S  S  T  S  V  *  S  A  L  D  *  L  L  E  L  F  V  L  D  M  *  L  L  L  F  L  T  A  G  S  C  W  L  Y  L  K  *  I  L  F  Q  F  L  V  L  N  *  I  *  C  C  K  Y  N  D  *  S  M  *  G  Y  H  V  F  Q  G  S  N  K  L  K  :  E  A  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40267" stop="40321"/>
                    <exon start="46235" stop="46392"/>
                    <exon start="46472" stop="46597"/>
                    <exon start="46738" stop="46842"/>
                    <exon start="46926" stop="47000"/>
                    <exon start="47155" stop="47346"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVLSALTHPPLANPTIYEESDVGTGAGLFEVKKIGDEFFTFIVDCKDPKACTILLRGASKDLLNEVERNLQDAMSVARNIIKCPKLVPGGGATELTVSAMLKQKSSSVEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGEITDMKERKIWDSYAVKAQAFKTAIEAACLLLRIDDIVSGIKKKQAPGAGQGPSKPKIDEEGDADNDQLIPE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="45822" e_stop="46392"/>
            <exon e_start="46472" e_stop="46597"/>
            <exon e_start="46738" e_stop="46842"/>
            <exon e_start="46926" e_stop="47000"/>
            <exon e_start="47155" e_stop="47382"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.882" e_score="0.981"/>
          <exon-intron don_prob="0.999" acc_prob="0.821" e_score="0.992"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="0.981"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.987"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="45822" e_stop="46392" e_length="571"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.882">
            <gDNA_intron_boundary i_start="46393" i_stop="46471" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="46472" e_stop="46597" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.821">
            <gDNA_intron_boundary i_start="46598" i_stop="46737" i_length="140"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="46738" e_stop="46842" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46843" i_stop="46925" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="46926" e_stop="47000" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="47001" i_stop="47154" i_length="154"/>
          </intron>
          <exon e_serial="5" e_score="0.934">
            <gDNA_exon_boundary e_start="47155" e_stop="47382" e_length="228"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45822" stop="46392"/>
              <exon start="46472" stop="46597"/>
              <exon start="46738" stop="46842"/>
              <exon start="46926" stop="47000"/>
              <exon start="47155" stop="47382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8848-3" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTGCCTGGTGGGCAGTTGGAAGACTCTGTGGTGCTTAAAGGAGTAATGATGAACAAAGATGTAGTTGCCCCTGGCAAAATGAAGAGAAAGATTGTAAACCCTCGCATCATTCTACTTGATTGTCCCCTAGAGTACAAGAAAGGTGAGAACCAAACAAATGCAGAGCTCCTTAGAGAGGAGGATTGGACTGTCCTCTTGAAAATGGAAGAAGAGTACATTGAGAACATGTGCGCACAGATACTTAAATTCAAGCCGGATGTGGTTATTACTGAAAAGGGACTCAGTGATCTGGCATGCCATTATCTGTGCAAGGCTGGTGTCAGTGCAATCAGAAGGCTAAGGAAGACAGACAATAACAGAATTGCTAAGGCATGTGGGGCAGTTATTGTTAATAGACCTGATGAGTTGCAAGAATCTGATGTTGGTACTGGTGCCGGTCTGTTTGAAGTGAAAAAAATTGGGGATGAGTTCTTTACTTTTATTGTTGATTGCAAGGATCCGAAAGCATGTACTATACTTTTAAGGGGTGCGAGCAAAGATCTACTGAATGAAGTAGAAAGAAATCTACAG : GATGCCATGTCTGTCGCTAGAAACATCATCAAGTGTCCTAAGCTAGTTCCCGGTGGTGGTGCAACAGAGTTAACTGTATCTGCCATGTTAAAGCAGAAAAGTTCATCCGTTGAAGGCATAGAAAAG : TGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATACCACGAACTTTGGCTCAGAACTGTGGTGTAAATGTGATTCGTACTATGACCGCTCTTCAAGGAAAG : CATGCAAATGGCGAGAATGCATGGATAGGCATTGATGGAAACACTGGTGAGATTACCGACATGAAAGAGCGGAAG : ATATGGGATTCCTATGCTGTAAAAGCACAGGCTTTTAAAACTGCCATTGAAGCTGCTTGCCTACTTCTGAGAATTGATGACATTGTGAGTGGAATAAAGAAGAAGCAAGCCCCTGGAGCAGGACAAGGTCCATCAAAACCAAAAATAGACGAAGAAGGTGATGCAGACAATGACCAGCTAATTCCGGAATGAACATGATATACTATGCTGCAATGGAAATGCTTATGC</gDNA_template>
            <first_frame> G  A  W  W  A  V  G  R  L  C  G  A  *  R  S  N  D  E  Q  R  C  S  C  P  W  Q  N  E  E  K  D  C  K  P  S  H  H  S  T  *  L  S  P  R  V  Q  E  R  *  E  P  N  K  C  R  A  P  *  R  G  G  L  D  C  P  L  E  N  G  R  R  V  H  *  E  H  V  R  T  D  T  *  I  Q  A  G  C  G  Y  Y  *  K  G  T  Q  *  S  G  M  P  L  S  V  Q  G  W  C  Q  C  N  Q  K  A  K  E  D  R  Q  *  Q  N  C  *  G  M  W  G  S  Y  C  *  *  T  *  *  V  A  R  I  *  C  W  Y  W  C  R  S  V  *  S  E  K  N  W  G  *  V  L  Y  F  Y  C  *  L  Q  G  S  E  S  M  Y  Y  T  F  K  G  C  E  Q  R  S  T  E  *  S  R  K  K  S  T   : G  C  H  V  C  R  *  K  H  H  Q  V  S  *  A  S  S  R  W  W  C  N  R  V  N  C  I  C  H  V  K  A  E  K  F  I  R  *  R  H  R  K   : V  A  V  *  S  C  C  N  C  F  *  S  Y  T  T  N  F  G  S  E  L  W  C  K  C  D  S  Y  Y  D  R  S  S  R  K   : A  C  K  W  R  E  C  M  D  R  H  *  W  K  H  W  *  D  Y  R  H  E  R  A  E   : D  M  G  F  L  C  C  K  S  T  G  F  *  N  C  H  *  S  C  L  P  T  S  E  N  *  *  H  C  E  W  N  K  E  E  A  S  P  W  S  R  T  R  S  I  K  T  K  N  R  R  R  R  *  C  R  Q  *  P  A  N  S  G  M  N  M  I  Y  Y  A  A  M  E  M  L  M  </first_frame>
            <second_frame>  V  P  G  G  Q  L  E  D  S  V  V  L  K  G  V  M  M  N  K  D  V  V  A  P  G  K  M  K  R  K  I  V  N  P  R  I  I  L  L  D  C  P  L  E  Y  K  K  G  E  N  Q  T  N  A  E  L  L  R  E  E  D  W  T  V  L  L  K  M  E  E  E  Y  I  E  N  M  C  A  Q  I  L  K  F  K  P  D  V  V  I  T  E  K  G  L  S  D  L  A  C  H  Y  L  C  K  A  G  V  S  A  I  R  R  L  R  K  T  D  N  N  R  I  A  K  A  C  G  A  V  I  V  N  R  P  D  E  L  Q  E  S  D  V  G  T  G  A  G  L  F  E  V  K  K  I  G  D  E  F  F  T  F  I  V  D  C  K  D  P  K  A  C  T  I  L  L  R  G  A  S  K  D  L  L  N  E  V  E  R  N  L  Q  :  D  A  M  S  V  A  R  N  I  I  K  C  P  K  L  V  P  G  G  G  A  T  E  L  T  V  S  A  M  L  K  Q  K  S  S  S  V  E  G  I  E  K  :  W  P  Y  E  A  A  A  I  A  F  E  A  I  P  R  T  L  A  Q  N  C  G  V  N  V  I  R  T  M  T  A  L  Q  G  K  :  H  A  N  G  E  N  A  W  I  G  I  D  G  N  T  G  E  I  T  D  M  K  E  R  K  :  I  W  D  S  Y  A  V  K  A  Q  A  F  K  T  A  I  E  A  A  C  L  L  L  R  I  D  D  I  V  S  G  I  K  K  K  Q  A  P  G  A  G  Q  G  P  S  K  P  K  I  D  E  E  G  D  A  D  N  D  Q  L  I  P  E  *  T  *  Y  T  M  L  Q  W  K  C  L  C </second_frame>
            <third_frame>   C  L  V  G  S  W  K  T  L  W  C  L  K  E  *  *  *  T  K  M  *  L  P  L  A  K  *  R  E  R  L  *  T  L  A  S  F  Y  L  I  V  P  *  S  T  R  K  V  R  T  K  Q  M  Q  S  S  L  E  R  R  I  G  L  S  S  *  K  W  K  K  S  T  L  R  T  C  A  H  R  Y  L  N  S  S  R  M  W  L  L  L  K  R  D  S  V  I  W  H  A  I  I  C  A  R  L  V  S  V  Q  S  E  G  *  G  R  Q  T  I  T  E  L  L  R  H  V  G  Q  L  L  L  I  D  L  M  S  C  K  N  L  M  L  V  L  V  P  V  C  L  K  *  K  K  L  G  M  S  S  L  L  L  L  L  I  A  R  I  R  K  H  V  L  Y  F  *  G  V  R  A  K  I  Y  *  M  K  *  K  E  I  Y  R :   M  P  C  L  S  L  E  T  S  S  S  V  L  S  *  F  P  V  V  V  Q  Q  S  *  L  Y  L  P  C  *  S  R  K  V  H  P  L  K  A  *  K  S :   G  R  M  K  L  L  Q  L  L  L  K  L  Y  H  E  L  W  L  R  T  V  V  *  M  *  F  V  L  *  P  L  F  K  E  S :   M  Q  M  A  R  M  H  G  *  A  L  M  E  T  L  V  R  L  P  T  *  K  S  G  R :   Y  G  I  P  M  L  *  K  H  R  L  L  K  L  P  L  K  L  L  A  Y  F  *  E  L  M  T  L  *  V  E  *  R  R  S  K  P  L  E  Q  D  K  V  H  Q  N  Q  K  *  T  K  K  V  M  Q  T  M  T  S  *  F  R  N  E  H  D  I  L  C  C  N  G  N  A  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0251J13.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45823" stop="46392"/>
                    <exon start="46472" stop="46597"/>
                    <exon start="46738" stop="46842"/>
                    <exon start="46926" stop="47000"/>
                    <exon start="47155" stop="47346"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1065</number_coding_nucleotides>
                  <number_encoded_amino_acids>355</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPGGQLEDSVVLKGVMMNKDVVAPGKMKRKIVNPRIILLDCPLEYKKGENQTNAELLREEDWTVLLKMEEEYIENMCAQILKFKPDVVITEKGLSDLACHYLCKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFTFIVDCKDPKACTILLRGASKDLLNEVERNLQDAMSVARNIIKCPKLVPGGGATELTVSAMLKQKSSSVEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGEITDMKERKIWDSYAVKAQAFKTAIEAACLLLRIDDIVSGIKKKQAPGAGQGPSKPKIDEEGDADNDQLIPE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 23 chains have been computed
$ 
$ memory statistics:
$ 87440 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 14573 bytes was the average size of a spliced alignment
$ 9840 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2460 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 23 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:35:36
-->
