<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 20:43:50"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U566183" ref_strand="+" ref_description="SGN-U566183 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147828134|emb|CAN64086.1| (e_value=3e-61) hypothetical; (*ATH) AT3G55490.1 (e_value=3e-58) |; (*SWP) sp|Q54EH6|PSF3_DICDI (e_value=5e-14) Probable DNA replication complex GINS protein PSF3 OS=Dictyostelium discoideum GN=gins3; ">
      <seq>ggtttgatctcattctctcttcgtccactctgagcatttggcgagttgtagcgaagattgtggtgaagttcacttttttagcattgaaaatgacaagttattatgatattgatgatatattagctgaggaagagatggttccagctgtgttcttgcaaacagctaatgaagttgggatatttgattgtgctgatgacactaacaaggttgaagctggtacacatgtagaaatgcccttttggcttgctcaggagctatatgtgagacaagtggtatcgatcaaagttcctccatattttgataccagagccaagacgaggaatgaaataggagctgatgcagcacatgttgatctaaggagtttatgtccatacttttatgattttggatgcaagatagcacgcctgattggtgaaaaaaccattggacctctacttctggttgcatttcgaacaagatatagagaagtcctcatcaaggctcatactgcagcatcaattgtggcacccaagcacttttctcttcttacaaaagaagagactaaattgtatgaagctggtcaatcctcaacagctgcatttaagaagtggagaatgggaggtcctagactgcagaaagcttctgtacttgggagaaagaggaagcctgttgaatgagtttttgtacttgaaacatatgatcaatgtgaagatgtgtttgtagtatctatttggctattcaatgagatttacatctcctttcaactaaaaacagaatgctttggtacggcgtacaaaaatagtattaaataaaatgtattagtaatgttgacattactatcgactgtttgatttgggtattaaatgaatagagacagtgtattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0244P17.1" temp_strand="+" temp_description="C05HBa0244P17.1  CU914756.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0244P17 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="4072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="218" g_stop="258" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="259" i_stop="456" i_length="198">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="457" g_stop="549" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="134" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="550" i_stop="655" i_length="106">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="656" g_stop="727" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="206" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="728" i_stop="811" i_length="84">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="812" g_stop="912" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="307" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="913" i_stop="1346" i_length="434">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1347" g_stop="1445" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="406" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1446" i_stop="2844" i_length="1399">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2845" g_stop="2984" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="546" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2985" i_stop="3456" i_length="472">
            <donor d_prob="0.815" d_score="1.00"/>
            <acceptor a_prob="0.674" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3457" g_stop="3772" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="864" r_length="318" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0244P17.1" gen_strand="+" ref_id="SGN-U566183" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0244P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="218" e_stop="258"/>
          <exon e_start="457" e_stop="549"/>
          <exon e_start="656" e_stop="727"/>
          <exon e_start="812" e_stop="912"/>
          <exon e_start="1347" e_stop="1445"/>
          <exon e_start="2845" e_stop="2984"/>
          <exon e_start="3457" e_stop="3772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTGATCTCATTCTCTCTTCGTCCACTCTGAGCATTTGGGTGAGTGTTTGTATGCTAATTTTGTGTATAATTTACTCTATTTTTGTCAAATCTCGAATAAATAGAGTAACTTTTAGTTATTATTTTCTGGTTTCTTTATTTTTTCTGAATCAGTGAACTCAATATGGTTGCATTTCTGAAAGAATCAGAAAGATTTGAAATGTTCGTAATTTGTTGCTTCTGGGTTTTTGATTTCAGCGAGTTGTAGCGAAGATTGTGGTGAAGTTCACTTTTTTAGCATTGAAAATGACAAGTTATTATGATATTGATGATATATTAGCTGAGGAAGAGGTAATTTCTAGTTCATGATTTTATTTTTTGGGTTGAAAATGTTTCTAATTAGGTATTTGGTGTATATATATATATATATGGGTTTGATACTAGTTTTGTAATTCAGATGGTTCCAGCTGTGTTCTTGCAAACAGCTAATGAAGTTGGGATATTTGATTGTGCTGATGACACTAACAAGGTGAAATTCCGAGGGTTAATTTATGTCGAATCTGTTTTGTTTTTTGATGGGAAAACTGATGGTTATTTACTTTTTGAAATCCAGGTTGAAGCTGGTACACATGTAGAAATGCCCTTTTGGCTTGCTCAGGAGCTATATGTGAGACAAGTGGTATCGATCAAAGTTCCTCCATATTTTGATACCAAGTAAGTAAAGATCCTAGCGTTTCTCCTTTAAGTTTCACGCTTTCATCTATTTTAAACATGAGTGGAATTAGTTTACGCAAAAATGCAGTTATTGGAAGAGATGTTGGATATGCAGGGTTACTTGGTCTTACTTGTGCCAACATCAAGTTATTATAGTATAAGGATTGTAAGTCACTTGTTGTTGTTTTGGCCTGATGAAAATCTGCCATGCTGGGACTCTTTCCTGCTTTGTACAGAACATGTCGTATCTCATTTGACAATTCGCATCTCAGTTCTAACTTTTCTCTCTCTGGGTGGGATGGTGTTTGGGTGGGGGGTGGTTGCAGAAGTATGAGTGTCTTATCTCAGTATTAAAGTTCTTGGTATTCAAGTGGTACTTGTTTTGTAGATCTGAGAGTAAAAACCTGGTTGTTTCTTGTATTTTAATTTACCAGAGCCAAGACGAGGAATGAAATAGGAGCTGATGCAGCACATGTTGATCTAAGGAGTTTATGTCCATACTTTTATGATTTTGGATGCAAGATAGCACGCCTGTGAGTTCTTCTTGACTATGTTCCCTTCTGCCTGCAACTTGTCATTCTTTTTATCACTTTATAGCTGTTTCCTCTTTTGCATGAATCCCCAGTGCCCAGGTAAGGGAACTGATATAATATGATTGATTTTATTTTGCAATAGTCGCCAAGTAATGTGAGACAAAACCTTTGTACTTCAACTTTTAGCTGGTTATTTACTTCTAAGCATCAGTAGATTCATTTGCTATCTTGATGATAAAAAAATAATCACTTGTACTTGCAGTTGTCATTTCTAGTGTAGCATTATACTTCTAATTGGTCTAAATCATCTATGATTTGATAAAAAATCTTCAGTGTATTATCATGCTGTCAGCGTCTTTAAATTATTCGAGAGGTATAATTTATCTCATTCGGTGGTCTGGTTTGATGGGCTAATAAGTTTTTTTGAAGTTCAACTGTTTTACAGCAACTAATGTGGAGATAGTGCCACCCATCTTTTGAAGTTCTATTTTACAGCAATGCACCCATCACCAAAGAAATGCAAAACCCATTTTGTTGCTATCTTGGAGGGGTTTGCCTTTCTTTGGTTATTGGTGCATTGCTGAGATTAGGAGATTGGAAGCTTTTCTAGAAAAATCGATTTTATTGTTCCTTCTTCACCTATAAGCTATTCGTATCTGAGTTGCTATATTAAATGTGTACAATTGGGAAGCGAAGGGGATAAGAAAGGGAAGAGATTATGCATATATCAGCTCATCATTGAACATGAGGATGAGTTTGGTTTATACTCATACCTTGTTGCATCCTGCACTCAAAATGATTTAAGCACATTAAATTCTTGAATCTTCTGTTTGCTATCCTATGTTTTCCCTTCAAGGGAAAAAATTAAAGGAAATTTAAATGCATGCATGTAACTGGTGGCTCCTTTATTTTTGTTGTGGAGAGGCTCTTACTCTGTTTCTCAGTGTAGTGATATAGTTCTTATTATTAAGCTGTTCATGCAATTATAAATTCATACAACAATCTTTGTGTTTTTAATATATCAATTTTAACTGCTTTGAAAACCTATTAAGTGATAATTCACGAAGGACCAACATGGGTACCCTTAGGCCTTAACTAGAGGTCTCGGGTTCGATCCCCTGGGTATGGAGAAAATCCTGTAGGGAGCGCCACCTCCGAGTGGGCCTTGTAGAGCGCAATCCGGGTTTAGTCGGAGCTCCAATGTGGGCTCCGGACACAGGGTAGAAAATTAAAAAAAAAAAACTCACAAGGGAGGAATGATGATTTTATTCATATAACGATCCTGATTTTCTTGTCCTTTCTGTTGCACATTAGTCAATTGATACAAACATAGATGCTTAATTTGGTTTTTCTTTAGGTCAGCGTTATCTCATGTTCAACATCTTTCTTTTTGGAACAGGATTGGTGAAAAAACCATTGGACCTCTACTTCTGGTTGCATTTCGAACAAGATATAGAGAAGTCCTCATCAAGGCTCATACTGCAGCATCAATTGTGGCACCCAAGCACTTTTCTCTTCTTACAAAAGAAGAGACTAAATGTGAGAAAATTCTGCCAAACTATTGATTCTCTTCCATAATTACGCCCCTGCCCTTCCAAAAATATGTTGCTCAGACTCCTCACAAATGCTAAAAAGGTGCGTGTTGGATCCTTTCAAATCAAGTGCACTTTTTGGCGATCCGATATGGGCGCAACAACATTTTTAGAAATTCTGAGCAACATAGTTCCAAGGGAATATAAAAAAGCAAAAGAAACCCTCTTCTGAGTAGCAGCTTTTGGGCAGTTTCCTGAAAATGCTTCTTTGGAGAAGTTTTAGTAACACAATGAACTGTTTTTCGTTAGGTGTTTTTAGAAGTTTCATTCCCAAAAATATGTTTCCACAAGTAGCATCCCATGTTCATTGTGTCCTTCACACACACCCAACGTTCAAAAGTATTTGTCTAGATTATAGTGAAATGTTGTTATAACGAGGTTTGACTGTGTTAACATTTTGTTTCCTTTCAATGCTGAAGTGTATGAAGCTGGTCAATCCTCAACAGCTGCATTTAAGAAGTGGAGAATGGGAGGTCCTAGACTGCAGAAAGCTTCTGTACTTGGGAGAAAGAGGAAGCCTGTTGAATGAGTTTTTGTACTTGAAACATATGATCAATGTGAAGATGTGTTTGTAGTATCTATTTGGCTATTCAATGAGATTTACATCTCCTTTCAACT-AAAACAGATTG-TTTGGTACGGCGTACAAAAATAGTATTAAATAAAATGTATTAGTAATGTTGACATTACTATCGACTGTTTGATTTGTGTATTAAATGAATAGAGACAGTGTATTAG</genome_strand>
        <mrna_strand>GGTTTGATCTCATTCTCTCTTCGTCCACTCTGAGCATTTGG......................................................................................................................................................................................................CGAGTTGTAGCGAAGATTGTGGTGAAGTTCACTTTTTTAGCATTGAAAATGACAAGTTATTATGATATTGATGATATATTAGCTGAGGAAGAG..........................................................................................................ATGGTTCCAGCTGTGTTCTTGCAAACAGCTAATGAAGTTGGGATATTTGATTGTGCTGATGACACTAACAAG....................................................................................GTTGAAGCTGGTACACATGTAGAAATGCCCTTTTGGCTTGCTCAGGAGCTATATGTGAGACAAGTGGTATCGATCAAAGTTCCTCCATATTTTGATACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAAGACGAGGAATGAAATAGGAGCTGATGCAGCACATGTTGATCTAAGGAGTTTATGTCCATACTTTTATGATTTTGGATGCAAGATAGCACGCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGTGAAAAAACCATTGGACCTCTACTTCTGGTTGCATTTCGAACAAGATATAGAGAAGTCCTCATCAAGGCTCATACTGCAGCATCAATTGTGGCACCCAAGCACTTTTCTCTTCTTACAAAAGAAGAGACTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAAGCTGGTCAATCCTCAACAGCTGCATTTAAGAAGTGGAGAATGGGAGGTCCTAGACTGCAGAAAGCTTCTGTACTTGGGAGAAAGAGGAAGCCTGTTGAATGAGTTTTTGTACTTGAAACATATGATCAATGTGAAGATGTGTTTGTAGTATCTATTTGGCTATTCAATGAGATTTACATCTCCTTTCAACTAAAAACAGAATGCTTTGGTACGGCGTACAAAAATAGTATTAAATAAAATGTATTAGTAATGTTGACATTACTATCGACTGTTTGATTTGGGTATTAAATGAATAGAGACAGTGTATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U576953" ref_strand="+" ref_description="SGN-U576953 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|157338863|emb|CAO42214.1| (e_value=5e-148) unnamed; (*ATH) AT3G18210.2 (e_value=8e-137) |; (*SWP) sp|Q3ED68|Y1295_ARATH (e_value=5e-122) Uncharacterized PKHD-type hydroxylase At1g22950 OS=Arabidopsis thaliana GN=At1g22950; ">
      <seq>cttcatcaccctcagcaaaatctcagctgaaaaaaaaaaaccctaatctccatttgatagaatgatcctataacattcaaaattcttcctgcaaatcccaaaattcagaatctgaatcaaaaattgttgaactgaatcaatgtctcaagatggagcaacagctatggattggaagaaggatggtcaatcaacaaactctaccggaaatggcatggggaattgtgttcggaatggatcaaacggtgttgtttacccaccgtacgcttctcaccggctgcgattgaaccctagtgttgatcacaaaccggataactatgatgaccttcaattggatttcagtccgttgttgtttagttcccttgaacgttatcttccgcctgctcttctcaactcatcacgtgaccagaaggttcatttcatgcgtgaaattctcctccgttactttcctgaaggcgaacgcactcgtgtccagaagcatagagaatacagacagaagattatatcaaactatcagcctctacacagggaattatatacgatgcatgctcaaaatttctttgtgccatcatttctcaaggcaattagtgagaactcagaggaaagtttcaggaacataatgtctgaaccctctcctggagtttttacgttcgaaatgcttcaaccacgattttgtgagatgttgttggctgaggtagaaaactttgagaggtgggtccgtgagacgaaattcagaataatgcgtcccaatacgatgaacagatttggtgccgttcttgatgactttggccttgacgccatgctggagaagttgatggaagatttcattcgtcccatttcgagagttttctttactgaagttggtggatccacacttgattcccatcatggctttgttgttgagtatggaatggacagagatgttgacttgggtttccatgtcgatgattcagaagtgactttaaatgtgtgcttgggtaagcaattctcgggtggagagctgttcttccgtggagtgcggtgtgagaagcatgtgaatgttgaaacacaaccagaggagatcttcgattatgcccataccgtggggcgtgcagtgctgcatcgtggtcgtcatcgccatggtgctagggcaacaacatcagggcagaggatcaacttgttgttgtggtgcaaaagttctgtctttagggagataaggaagcaccagaaggacacctccagctggtgtgcagagtgccagcgcaataagaaggaaaggcaacggcaggctgttgctgctactaaattggagctgctgaaaaaaggatcgtctgctatataactatgcgtactgttttacttttatatatcctcttctcgactttgcccccatgtaatatatagctgaaaccctcatattcaaggcaaatgcactttcttgttcgatataatattaaagggtgttgttcgtgttactgaaatagctatacatgtaaatcgagtaggtacctcctatttgtgtaactgagatggtatcagtacaaaaggagcgatcttgtaaacagtgtttcgcagtcatgtttgttaatggaggcaatttctttctcaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0244P17.1" temp_strand="-" temp_description="C05HBa0244P17.1  CU914756.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0244P17 sequenced_by:sanger upload_account_name:uk">
        <position start="10290" stop="3973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9990" g_stop="9526" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9525" i_stop="7506" i_length="2020">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7505" g_stop="7458" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="514" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7457" i_stop="7271" i_length="187">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.053" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7270" g_stop="7094" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="691" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7093" i_stop="7000" i_length="94">
            <donor d_prob="0.407" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6999" g_stop="6849" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="842" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6848" i_stop="6740" i_length="109">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6739" g_stop="6653" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="843" r_stop="929" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6652" i_stop="6543" i_length="110">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6542" g_stop="6418" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="930" r_stop="1054" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6417" i_stop="5430" i_length="988">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5429" g_stop="5311" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1055" r_stop="1173" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5310" i_stop="4803" i_length="508">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4802" g_stop="4691" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1174" r_stop="1285" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4690" i_stop="4576" i_length="115">
            <donor d_prob="0.715" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4575" g_stop="4273" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1286" r_stop="1588" r_length="303" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0244P17.1" gen_strand="-" ref_id="SGN-U576953" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1587</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0244P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U576953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9990" e_stop="9526"/>
          <exon e_start="7505" e_stop="7458"/>
          <exon e_start="7270" e_stop="7094"/>
          <exon e_start="6999" e_stop="6849"/>
          <exon e_start="6739" e_stop="6653"/>
          <exon e_start="6542" e_stop="6418"/>
          <exon e_start="5429" e_stop="5311"/>
          <exon e_start="4802" e_stop="4691"/>
          <exon e_start="4575" e_stop="4273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCACCCTCAGCAAAATCTCAGCTGAAAAA-AAAAACCCTAATCTCCATTTGATAGAATGATCCTATAACATTCAAAATTCTTCCTGCAAATCCCAAAATTCAGAATCTGAATCAAAAATTGTTGAACTGAATCAATGTCTCAAGATGGAGCAACAGCTATGGATTGGAAGAAGGATGGTCAATCAACAAACTCTACCGGAAATGGCATGGGGAATTGTGTTCGGAATGGATCAAACGGTGTTGTTTACCCACCGTACGCTTCTCACCGGCTGCGATTGAACCCTAGTGTTGATCACAAACCGGATAACTATGATGACCTTCAATTGGATTTCAGTCCGTTGTTGTTTAGTTCCCTTGAACGTTATCTTCCGCCTGCTCTTCTCAACTCATCACGTGACCAGAAGGTTCATTTCATGCGTGAAATTCTCCTCCGTTACTTTCCTGAAGGCGAACGCACTCGTGTAAGTTATCGAATTTTCATTTCTGCATTTTGAGTTTTGCATGTGTCGAGTCCTTATTTTTATGTGCATTTTGATGAGTGTGTATATACGATGTAAGCTTGTGTGTGAATTGAGCTATGATAGAATGCTAAGAAGCTGGAAATGAAATAAAAGTGGGGATTTGTACTGCAATGTATTTAGCATCCTAGTTTTCTGGGCACTGAGCTGAGATAGAATGCTAAGAAGCTGAAAATGTAAAACATTTGGGAGGTGTATTGCAAAATGTTGCATGTAGTTTAGCACAGTTTGATTAGTGTACATATCATATGAATTGAGCTGTGATAGAACACTGAAGCTGAAAATGGAAATAAATTAGAAGATAGATTTTTTTTGTGCTTTGGATTGCAATTTTTTCTATGTATTAGGCTTCATTGTTTTTTTCTGCACTGTTTGATTATTTTGATTAGGTTAGAATGTGAGGCTGTGAATTGACCTGTGATAGACTGTTGAGAAGCTGGAAAATTGTGGGCTTTGCATTATAAGATTTAGCATGTATTTTTCCTTTATTTGAGTTTGCTGTACCCTCTAGGTACAGTTATTTTCAATGTGGATTCCGGTTTTCTAGTGCTTGTTTCTAATTTGAGTACATGAAAATCCTTTGTTAGTTAGTGCTAGAAAAATGGCAAAGGGAGTTTTTTGAGCTCAATTATGTGCAGAGTTGTGAATTGAGATGTGATAGAATGCTGTTATGCTAACAATAACGAAAAGAAGTTAAAAAGATGAAAATTTCTGGGACTTTTGGTTGGTTATTACTGGAAATTTTTCAGGCGTTGTATTGCTTGTAACTGCCTTATGCAAGTTGCTGTTAGATACTCAGGATTAGTAGTGAATAACTTGGAAAACATAGTGTCCGCCTTTAACTATCAGTTGATCTTGTGTTCTGCAGAAGTGTTTATGCTATTTTTTGGATTTTGATTTATCTTTTGTATAGTTTGAGAAGTAAAAATTTAAAAGACTATCTGAAGTGAATTAAAAAAATAGTAAATCTTTTAACTGGATGGGAAATATTTCTGTACAAATATGGGATGTTGTTTGTTTCTCATGAAGTTTTGAAGCACTCACCATTGATAGTTAGCGTAGACGATTGCTGTTATTTGTAGAGAACCTTTCTTTGGTGTAGTTCTTTACTTTTTTCTAAATACACACTAGGATCACAAAAATATTTTCCACAAATTCAATGCAATTATTACTTTTTCAAAGGGAAAAGAGATTTGTAAGCTTAAGGTCCAATCTACTTTGAATTTGAGTACAATGAACATTTTGAAAGGGTTACAATTTTATTGCAAAACTGAGTAGCTGTTTACTTCAACAACTACTACTATCTTCAACCCCAAGAAGGCAAGAAGTTGGGTTTGACAAGATGAATCCTTACTATATCTTTCAATTCAAGCTTATCTCTGACCAATATTACACCATAAAAAATAAAAAAAGAAGTTCTCTATTTTTTTTGTGGGCATATAATGAGAGTAGATTTTTTTTTTGAAACATATATAAGCCAGTTGCTAATGATTTGAAGGCTTTTCAGATGGATTGGATCCTGATTAAAAATGCAGTGACTAGATATATAATTTCTATCTTATGATGACTATAATGTTGTGTCCCTTTTGTCGTGTTCTACATACTAAGCTTTTTTCTTGTTGGACACAGCATTTTGCTTTTTTCTTTTGAATAATTCAGGGGAGATGTGACCCCAGTATAGATGAATATATGAACAACCAAAATTTTGGTTTAAAAGAACTGATAATGTAAGTTAAACCTACCTGGTTATTGTTTATAATGTGGTGGAATAGTTGAGCAAACCATCCCAGTCTCCTAGTGAAAGCCTTGTTTACATGCGAATTATTTGGAATGCTGTCTGCTGATAAAGTCTTCTCTGACTGTTCTTGGTTTCCAAAAAATTTCCCTGCTATTTGTGAAATTCACACTCTCTCTTTCGTAACTCTATCAATATTATATTGTTTCATCTCCTCTGCTTTAACAGGTCCAGAAGCATAGAGAATACAGACAGAAGATTATATCAAACTATCAGGTATTTACATTTTGCTGAAGGGATTTGGGGTTAATATTTTAATGATAATTGTAAATACAGAAAAAGGTCAAAACTACCGTTAAACTATACGAAATAGCTTATATACCCTTAAACTATATTTCGGCTCAAAAATATACTTGCAGGGTTGATCGCCTTCTTTTTCTAATTTGCTTGCCTTCTATTCTAGCCTCTACACAGGGAATTATATACGATGCATGCTCAAAATTTCTTTGTGCCATCATTTCTCAAGGCAATTAGTGAGAACTCAGAGGAAAGTTTCAGGAACATAATGTCTGAACCCTCTCCTGGAGTTTTTACGTTCGAAATGCTTCAACCACGATTTTGTGAGATGTTGTTGGCTGAGGTATTAGCTGCCTTGCTGCTTGTATTTGCAGGCAATCTACTTCCTTTTTTGTAGTTTATCTTTTCTGTTTTCTTATCAGGCTCTAATTGATTAGGTAGAAAACTTTGAGAGGTGGGTCCGTGAGACGAAATTCAGAATAATGCGTCCCAATACGATGAACAGATTTGGTGCCGTTCTTGATGACTTTGGCCTTGACGCCATGCTGGAGAAGTTGATGGAAGATTTCATTCGTCCCATTTCGAGAGGTAAGAACTTGTATATTTTTATTAGGATGCAGCAAAGAAAACAAAGAGGAGCTTAGTGAGAAGATTACCTGGATCTCTTTTGATATTCTACTTTGAATTTTGTGTGCAGTTTTCTTTACTGAAGTTGGTGGATCCACACTTGATTCCCATCATGGCTTTGTTGTTGAGTATGGAATGGACAGAGATGTTGACTTGGGTGAGTTGTTTCTATTTAGTAATTATATGGTGCAAACTATTGCTCCAGTGCCGCAAAACTTATTTGGTTGTTTGAGTTACTGCCTTGCTTCTAAACAACTTATTTTTCAGGTTTCCATGTCGATGATTCAGAAGTGACTTTAAATGTGTGCTTGGGTAAGCAATTCTCGGGTGGAGAGCTGTTCTTCCGTGGAGTGCGGTGTGAGAAGCATGTGAATGTTGAAACACAACCAGAGGTAATTATTTGTCCATTGTATGAGTTCAGTTATTGTGCATGTGGAATCTCTATACTCTGATAGGAAGTCATGTTTCCATTATTTTTTATTTATAAAAAGAAGTTCCATTCTTTCATACTTCCGCTTCTTTCACGCGGTGGTTATTGTGTTGTTGAAAGTAGTAGCCCATTCTCCATTACAATAAAAAGTTAGTAGCTTATCAACAACTTCGTAAGCAAGTAATGTTTAGCATCTTTTTCTGATAACTAAGTAATGAAACAACTTTCTCTGATTAAAAAAAATTACTGTTGATGGTATTTACCAAAAAAGAGGCTTACTGTTCATTTTGATTATATGAAGTCATGATTCTCAAAACTGGACCTTCCCTTTTCTTTCTTTTTTGATAACTAACTCAAAGTTGGATCTATGACCATCTGTTCATGGTTCAGAATGGAAAGGGGATCCTTTCTTTTACAAGTCAAAATAATAACTCCATTGATATCCACCAAGTTAGTGTCTAACATACAGTAACGATATACTTCAGCATAAAAAGGGACCTTCCAACCTTGAGTATATGATATGTATACACCAAAAATACAAATGACACATATTGTAGCTTTTAACTCTCTGACAATGGACCCTCAGCTCCTTCAAGCATTCTTCTGTTCCTCCAATTAGCCAACTAAAAGAGGGAAAACTACCTGTACTCCCTTGGACTGGCATCCAGTTTGTGGACCTTTATTGACACTTCATTTTGAAGGGAAAATTTGCCTTGTAATTATCTTTCCATTAATAGCAAAGGATAACGAATACACACTGTGTTTGCTTGCTCACCAAGTGTATCAGGCTATCAGCTGATACTTGTTGTCTACTATGGTGTAAATAATGAAGAAAGTTGCCAACTCCACCTTAGATGTGTGTTAGTAGCAATCATCAAATTCAGAATACAGCTTAATCATGTCAACTGTATGGACATTCACTATTTTATCTGTCTTTAATATTATAACAGGAGATCTTCGATTATGCCCATACCGTGGGGCGTGCAGTGCTGCATCGTGGTCGTCATCGCCATGGTGCTAGGGCAACAACATCAGGGCAGAGGATCAACTTGTTGTTGTGGTGCAGAAGGTATTAGATACTCTTGCCTTCCAATTTTGGTCATGCACTTGACAATCCTTTCCAAATTTGATCGTTGAAATTCTTGTTGTTGGAATATCCTGTAATTGCTGCATGTACCATCTGTTGGAAGAGTTAAGCCGACATAGTGCTTTTTGATTGTTTTAAGTATGCAATATTGATGCTTGATTATGACCTTTTCATCTATACAGACATTCAGATGTCTTCCATTTAATTTTTGGCATCTGTGCTTTGGTTTAGCATTTTTACAGAGACATTGTTTAATTAGGCTTCCATTATCTAAATCTCTGAACTTTTCATCAGCCATTGCTAGTAGCTGGTCATTCATACATTATACTTTGATTGCTCTTTCATGTTCCAACTGATAAATTTGTTTAACTTGTCACAATAAAAAACGTCGATATTCTGCTGTAATTCAATTATAGCAGAGTAACAAACTTTTCATTTTCGTCTACTAGAATTCTTGAATACCTAAATGATTGTTATCTTTCCCTTCCAGTTCTGTCTTTAGGGAGATAAGGAAGCACCAGAAGGACACCTCCAGCTGGTGTGCAGAGTGCCAGCGCAATAAGAAGGAAAGGCAACGGCAGGCTGTTGCTGCTACTAAATTGGTATGCAGCCACTCGTTTCCCTCATGATAGGCATCGAGTAGTTGACAAGCTCTACTTAATGCAACACGAAATAAAAAGCTGAAATCTAAATTATTTTGTCCTGTATGTTTTTCAGGAGCTGCTGAAAAGAGGATCGTCTGCTATATAACTATGCGTACTGTTTTACTTTTATATATCCTCTTCTCGACTTTGCCCCCATGTAATATATAGCTGAAACCCTCATATTCAAGGCAGATGCACTTTCTTGTTCGATATAATATTAAAGGGTGTTGTTCGTGTTACTGAAATAGCTATACATGTAAATCGAGTAGGTACCTCCTATTTGTGTAACTGAGATGGTATCAGTACAAAAGGAGCGATCTTGTAAACAGTGTTTCGCAGTCATGTTTGTTAATGGAGGCAATTTCTTTCTCAGGAT</genome_strand>
        <mrna_strand>CTTCATCACCCTCAGCAAAATCTCAGCTGAAAAAAAAAAACCCTAATCTCCATTTGATAGAATGATCCTATAACATTCAAAATTCTTCCTGCAAATCCCAAAATTCAGAATCTGAATCAAAAATTGTTGAACTGAATCAATGTCTCAAGATGGAGCAACAGCTATGGATTGGAAGAAGGATGGTCAATCAACAAACTCTACCGGAAATGGCATGGGGAATTGTGTTCGGAATGGATCAAACGGTGTTGTTTACCCACCGTACGCTTCTCACCGGCTGCGATTGAACCCTAGTGTTGATCACAAACCGGATAACTATGATGACCTTCAATTGGATTTCAGTCCGTTGTTGTTTAGTTCCCTTGAACGTTATCTTCCGCCTGCTCTTCTCAACTCATCACGTGACCAGAAGGTTCATTTCATGCGTGAAATTCTCCTCCGTTACTTTCCTGAAGGCGAACGCACTCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGAAGCATAGAGAATACAGACAGAAGATTATATCAAACTATCAG...........................................................................................................................................................................................CCTCTACACAGGGAATTATATACGATGCATGCTCAAAATTTCTTTGTGCCATCATTTCTCAAGGCAATTAGTGAGAACTCAGAGGAAAGTTTCAGGAACATAATGTCTGAACCCTCTCCTGGAGTTTTTACGTTCGAAATGCTTCAACCACGATTTTGTGAGATGTTGTTGGCTGAG..............................................................................................GTAGAAAACTTTGAGAGGTGGGTCCGTGAGACGAAATTCAGAATAATGCGTCCCAATACGATGAACAGATTTGGTGCCGTTCTTGATGACTTTGGCCTTGACGCCATGCTGGAGAAGTTGATGGAAGATTTCATTCGTCCCATTTCGAGAG.............................................................................................................TTTTCTTTACTGAAGTTGGTGGATCCACACTTGATTCCCATCATGGCTTTGTTGTTGAGTATGGAATGGACAGAGATGTTGACTTGG..............................................................................................................GTTTCCATGTCGATGATTCAGAAGTGACTTTAAATGTGTGCTTGGGTAAGCAATTCTCGGGTGGAGAGCTGTTCTTCCGTGGAGTGCGGTGTGAGAAGCATGTGAATGTTGAAACACAACCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATCTTCGATTATGCCCATACCGTGGGGCGTGCAGTGCTGCATCGTGGTCGTCATCGCCATGGTGCTAGGGCAACAACATCAGGGCAGAGGATCAACTTGTTGTTGTGGTGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGTCTTTAGGGAGATAAGGAAGCACCAGAAGGACACCTCCAGCTGGTGTGCAGAGTGCCAGCGCAATAAGAAGGAAAGGCAACGGCAGGCTGTTGCTGCTACTAAATTG...................................................................................................................GAGCTGCTGAAAAAAGGATCGTCTGCTATATAACTATGCGTACTGTTTTACTTTTATATATCCTCTTCTCGACTTTGCCCCCATGTAATATATAGCTGAAACCCTCATATTCAAGGCAAATGCACTTTCTTGTTCGATATAATATTAAAGGGTGTTGTTCGTGTTACTGAAATAGCTATACATGTAAATCGAGTAGGTACCTCCTATTTGTGTAACTGAGATGGTATCAGTACAAAAGGAGCGATCTTGTAAACAGTGTTTCGCAGTCATGTTTGTTAATGGAGGCAATTTCTTTCTCAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U604531" ref_strand="+" ref_description="SGN-U604531 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gctaatttactgaattttgaaagtttgctgctgttggttcagtaggttgatggaagtttaagaggtttgctttttggtcagaattgttgtgttggtattgtttatagtgatgctgataaagttggctgtagttataaacagctaaaacagctacatggttcattctaattttacaacaactacaacatgttaacataccagtgtagtcctgcaagtggggcatggggagggtagtgtgtacagtgaccttaccccctaatttaagaaggacttcaaaatcttaaatttaggttgatgacttgaaaatttgtttcccagagctacatgaaagtgatatctctcccaggcacacacacttcatttgtttgcatgttttctgattggatttaatatcttggattcgctggattaggaaaatgtttagttggtaaactttgtttttatatgttgatgttgatatgttcagctgtatctataaattggttctcttgcatgaagtaacaactacattgtatccacccgcttataactcacctttgcttaacattcttgtaaacttggagaatgcaaggtaaaagatgttctgcaaaatgtaataatgctgaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0244P17.1" temp_strand="+" temp_description="C05HBa0244P17.1  CU914756.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0244P17 sequenced_by:sanger upload_account_name:uk">
        <position start="11729" stop="12937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12029" g_stop="12637" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0244P17.1" gen_strand="+" ref_id="SGN-U604531" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0244P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U604531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12029" e_stop="12637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAATTTACTGAATTTTGAAAGTTTGCTGCTGTTGGTTCAGTAGGTTGATGGAAGTTTAAGAGGTTTGCTTTTTGGTCAGAATTGTTGTGTTGGTATTGTTTATAGTGATGCTGATAAAGTTGGCTGTAGTTATAAACAGCTAAAACAGCTACATGGTTCATTCTAATTTTACAACAACTACAACATGTTAACATACCAGTGTAGTCCTGCAAGTGGGGCATGGGGAGGGTAGTGTGTACAGTGACCTTACCCCCTAATTTAAGAAGGACTTCAAAATCTTAAATTTAGGTTGATGACTTGAAAATTTGTTTCCCAGAGCTACATGAAAGTGATATCTCTCCCAGGCACACACACTTCATTTGTTTGCATGTTTTCTGATTGGATTTAATATCTTGGATTCGCTGGATTAGGAAAATGTTTAGTTGGTAAACTTTGTTTTTATATGTTGATGTTGATATGTTCAGCTGTATCTATAAATTGGTTCTCTTGCATGAAGTAACAACTACATTGTATCCACCCGCTTATAACTCACCTTTGCTTAACATTCTTGTAAACTTGGAGAATGCAGGGTAAAAGATGTTCTGCAAAATGTAATAATGCTGAACAT</genome_strand>
        <mrna_strand>GCTAATTTACTGAATTTTGAAAGTTTGCTGCTGTTGGTTCAGTAGGTTGATGGAAGTTTAAGAGGTTTGCTTTTTGGTCAGAATTGTTGTGTTGGTATTGTTTATAGTGATGCTGATAAAGTTGGCTGTAGTTATAAACAGCTAAAACAGCTACATGGTTCATTCTAATTTTACAACAACTACAACATGTTAACATACCAGTGTAGTCCTGCAAGTGGGGCATGGGGAGGGTAGTGTGTACAGTGACCTTACCCCCTAATTTAAGAAGGACTTCAAAATCTTAAATTTAGGTTGATGACTTGAAAATTTGTTTCCCAGAGCTACATGAAAGTGATATCTCTCCCAGGCACACACACTTCATTTGTTTGCATGTTTTCTGATTGGATTTAATATCTTGGATTCGCTGGATTAGGAAAATGTTTAGTTGGTAAACTTTGTTTTTATATGTTGATGTTGATATGTTCAGCTGTATCTATAAATTGGTTCTCTTGCATGAAGTAACAACTACATTGTATCCACCCGCTTATAACTCACCTTTGCTTAACATTCTTGTAAACTTGGAGAATGCAAGGTAAAAGATGTTCTGCAAAATGTAATAATGCTGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U573657" ref_strand="+" ref_description="SGN-U573657 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|118481608|gb|ABK92746.1| (e_value=1e-67) unknown; (*ATH) AT5G13890.1 (e_value=2e-61) | Symbol: None | expressed protein, contains Pfam profile PF04819: Family of unknown function (DUF716) (Plant viral-response family) | chr5:4478845-4480923 REVERSE | Aliases: MAC12.15, MAC12_15; ">
      <seq>gatagtttaccaagaaaaaaagaaaagaaaagaaaaggaagtagtctttatactttgcctctccctctaaaaatttaatttgcaatggcgaccctaatgtatcacatgttttcatcgtcttcactgttatctctgggattctaccacctcatctgcaccacccggaaccgcctcaaatccgccggagactacgtcgccaaaccctaccaccctctctccttcatatctcaaccgcatctccgccgtctacctctttatctcctccttctctgcctcctcatttctctgatccatcaatcactcgtctctttggatgccgatcctctcctcaaaggtcatactccggtgcatcgtttcacctctctccaagccgctgctgttgttttctcgtttctaatactcgttgtttttctccttatctctgagtcaacttctcttctcccgcttcctcccgatctgttcttcgctttagctgctgcacttttctacctacagtattcggtatccgattcttctgcttctgttcaaacctccgatctccaggctaaatgtgattccgtttcagctcgcatttctgcactctccgcgttactttgtctcgtgattgctgttcaacctaggctttttctggctgatgttgcgttagctgcttctatctgtctccagggattatgggttctacagacgggactttcgctttatgttgatgcgttcatacctgagggttgtcataagttgttggatgttgttactggggtagaaggctcaaccaaatgcgatttggaggactctaagctcagggctattgctatacttgatttggcttttgtagttcatgtgatgtttgtattgctcattgttagtgtcacttatgctgccgttgctaaaactattggtatcaggagatttggttcttatgaggctctttccaatgctgactcgagtcatatccaaatgaaggctatgacgggaactcaagcttgattatcgtcgcattaggttataggaagggggcggcattacattcagattagtccatcattctcagctgtcatatctcaatcaagaaaaacaacaatctaaaaacgagctaagcccgccaagaaggcttcccaaagcagatatatatagctaagttcggttttgtttttgcagagttcaatcttgttgatggagtagaagcagtttcttttgtatggacccaatactttacattagactgtatttttatttggacaaatgttgtatgaaatgtcaaaaggggtataatacacactggttaaccacaatatggtttaaatatttgtaatttaaagttcagccatggttgctgtaccaaatgaagtatcccccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0244P17.1" temp_strand="-" temp_description="C05HBa0244P17.1  CU914756.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0244P17 sequenced_by:sanger upload_account_name:uk">
        <position start="19128" stop="14490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18829" g_stop="17831" g_length="999"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="999" r_length="999" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17830" i_stop="15145" i_length="2686">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15144" g_stop="14790" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1000" r_stop="1355" r_length="356" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0244P17.1" gen_strand="-" ref_id="SGN-U573657" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1354</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0244P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U573657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18829" e_stop="17831"/>
          <exon e_start="15144" e_stop="14790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGTTTACCAAGAAAAAAAGAAAAGAAAAGAAAAGGAAGTAGTCTTTATACTTTGCCTCTCCCTCTAAAAATTTAATTTGCAATGGCGACCCTAATGTATCACATGTTTTCATCGTCTTCACTGTTATCTCTGGGATTCTACCACCTCATCTGCACCACCCGGAACCGCCTCAAATCCGCCGGAGACTACGTCGCCAAACCCTACCACCCTCTCTCCTTCATATCTCAACCGCATCTCCGCCGTCTACCTCTTTATCTCCTCCTTCTCTGCCTCCTCATTTCTCTGATCCATCAATCACTCGTCTCTTTGGATGCCGATCCTCTCCTCAAAGGTCATACTCCGGTGCATCGTTTCACCTCTCTCCAAGCCGCTGCTGTTGTTTTCTCGTTTCTAATACTCGTTGTTTTTCTCCTTATCTCTGAGTCAACTTCTCTTCTCCCGCTTCCTCCCGATCTGTTCTTCGCTTTAGCTGCTGCACTTTTCTACCTACAGTATTCGGTATCCGATTCTTCTGCTTCTGTTCAAACCTCCGATCTCCAGGCTAAATGTGATTCCGTTTCAGCTCGCATTTCTGCACTCTCCGCGTTACTTTGTCTCGTGATTGCTGTTCAACCTAGGCTTTTTCTGGCTGATGTTGCGTTAGCTGCTTCTATCTGTCTCCAGGGATTATGGGTTCTACAGACGGGACTTTCGCTTTATGTTGATGCGTTCATACCTGAGGGTTGTCATAAGTTGTTGGATGTTGTTACTGGGGTAGAAGGCTCAACCAAATGCGATTTGGAGGACTCTAAGCTCAGGGCTATTGCTATACTTGATTTGGCTTTTGTAGTTCATGTGATGTTTGTATTGCTCATTGTTAGTGTCACTTATGCTGCCGTTGCTAAAACTATTGGTATCAGGAGATTTGGTTCTTATGAGGCTCTTTCCAATGCTGACTCGAGTCATATCCAAATGAAGGCTATGACGGGAACTCAAGCTTGATTATCGTCGCATTAGGTATCATTCTCCCCTTAACTACTCAATGAAGGATATGTTTAGCTCTTAAGCAGAAGAATTGAAATGGTGAAATGTAAAGAGATGCATTCTTAGTATATAATGCCTTGTAACGCAATATATCTACCAAATCCATTGTCTACTTTCTGTTTTGTCCTCTGAGATTGTTGTGCAAGTATTGTTACTGATCATTCACTTGGTACATGCATTATTAATTTCTGTGTTATCAGTAGACAGAAGCTCTTGCACTTGGCAGAAAATGAGTCTCAGAGCAAAGGCATTAAGCACATTGCTCGATGTGATGACACAACATACTAATAATATAACAAGAGATGAAAGAAAACAACCACATGTCTAATCAAAATATCAAAAAGAAGCTGGGTGGGTGTTAATATCAGTTGGTTTGTTCTTTACAATATAGTACCTAAATCACCTTCAGAATTGGAGGTGATAGTAGTGTGCCCCAATAATAACCAAAACATACTCAAAACCAATAGCAGAGATCAATAAGGAGGAAAGGAAGTCTCTGTTCATTCTCTGGGTAAGTGCATTATCAAATCCCCTAGTCCAGAGAGCTTCCTAGATATGTATTATAAGCTCTATTATCACGGCGTCACATACTTGGTTATTATTTTGCTGCTATTGTGCTCCCTGGACGCATGCTGAATAAACCTATGATTGTTTTTTATGTGATTTTATTAAAAAATTTGGATAGTATTAACTAATTTGCTTAAGCCTTAAGTCCGTGATTTTTACAATTGTTTCTGCTTTGAAAATGTCTTGGTCTGACCTGGATTATCCAAGACGGTGTCATTCTTACCCAAGAATTATTAAAAGCATGGGAGTCACTGGTGATTATCCATATTTATCCCTCTTTTCTTTTGGAATTGATACTTGCAAAGCGGAAAGCCCTCTGATAGAATTAACTAGGACTTCTTACAGCGTCCTTCTCAATACAAGCTCCTCTTCTGTACCATTCTGGCTTATCATGTATCATAACTTCATCTCCATCTATCCTTTTGAATGATTAACGTGTTGAACTCATTTTTATACTTACTGTGGTCTTTGAAAGGGATCCTCTATCCCATGCTTGTTCATTCTTTGTTGAGATGCCCTTTCTAGGGTCCATATATAAGTACTATATAGAACATGTATAAGAGGGACCTGATCTTGGTTGCAGTATCCGAAGAACATAAATTTGCTTTCATTGAGTCTATTTACTTCCCACTCTCATTTACCGTCTTGGTTCATATTCTTCTGAGCTACATTTTCCACAAAGTTGATATGAAGATTATTCTTTTTCTTGACCTGTAAACCAACTCAACCGGGGAGAGGATAAACAAAGAAAAGGTCTCTTTAATTTTACTCATCTTTAAAAAATTAAGTTGAGTATCTGGTCTAGAGATGGCTCTCTTCTTTTCTAGAGATGGCTCTCTTCTTTCTAGCAGTAAATGGAAAATATCATAAATTTAAGTCCTTTCTACCTGGAAATTGCATCTTAGTTGGTAGAGAAGGTTTCCATAAGTGTCTTAAATGGAAAATGGGTCATGTGAAAACAATTAAGGTCTTCGGTAACTCTATCCCATTTACAACTGAAGTGATCCATTTCCTCCATTTTCCTTTGAAACATTGCTCCTGAGATCCTAACCATTCCCACTTTGCCATTTTGCTATGGATTATCATATAATTGTGCGTGTTATTTGGATTTTGTGAGTCTAACTGATCCCATTCTTTCCAACAAGAGTTTAAAGATATTTACTCCAACATCTACACTCCTCCCTCAGCTGTTAAATTTTAAGTTTATAGGGTTGCTTAGAAAATTCCTTCGCCTCTCTTAAGCTTTTGTTCACTTGGAAGTTTTTTAACAGACTTCCTCCCAAAGCTGGGTTAGGTAAGAGAACTTCTGTTAATTTCTTGTTGGCTCATGGCCCACATGTCATATATATAATTTATTAGAGTAGAAATTGTTTATGCTGAAAACTGGAATTCTCAGTGTAATCCCACAGGTGGGGTATGGGAGGATTGAGTGTACGCAGACTTACCCCTATCTTGTGGAGGTAGAGAGTTGTTTCCGAGAGACCTTGGCTTAAGTAATAAGGAGTGCCTTTTTTAGGATTATGAGATAGAAACTGTACGCAATCTATTCTTGAATTTGCCTTCACTTAGATTCACCTTCTTTCCACCTATTCTTTGGAGTTATCCTATTTAGTGTTCTTAAAGCCTCTTCTCTAAAGTGTATAGACCATGGTCCTTACTCATTACTCAATTACTCTTTCTATTCTTCCATTAAGTATTTGGAAACATGGAATGTAGTTCTGTTCCAGCGATTCACAGTTTTTAACAGTAGCTAATAGTTAAGAAGCCTTTCAGGAGATGATGGTCAAGAATATGATTGAAGCCAGGAAACTACTACAGCCTATATGCTCACACTCTCCAAAAATGCAAGAGTGAGTGTTGGATCCTTTTGGAGAGTCCGAGCAACATTGACCATAGTTTCTTACATGGCAGCATCCTTTTAGCCTCACAAGAAGTGGTTATCGAAAAACTATTCTTAGTTCTTATCATCAGAAACTTGAGTCCCGTGTGATCTCAATTCCTACAATATTGCCAAAGCTTTTTCTGTGTCTTACTAAACTTATTGACTTTATGTATTTGGTTTATTTCTAATCAACTCTCTTTTGTTGATCAGGTTATAGGAAGGGGGCGGCATTACATTCAGATTAGTCCATCATTCTCAGCTGTCATATCTCAATCAAGAAAAACAACAATCTAAAAACGAGCTAAGCCCGCCAAGAAGGCTTCCCAAAGCAGATATATATAGCTAAGTTCGGTTTTGTTTTTGCAGAGTTCAATCTTGTTGATGGAGTAGAGGCAGTTTCTTTTGTATGGACCCAATACTTTACATTAGACTGTATTTTTATTTGGACAAATGTTGTATGAAATGTCAAAGGGGGTATAATACACACTGGTTAACCACAATATGGTTTAAATATTTGTAATTTAAAGTTCAGCCATGGTTGCTGTACCAAATGAAGTAT-CCCCAT</genome_strand>
        <mrna_strand>GATAGTTTACCAAGAAAAAAAGAAAAGAAAAGAAAAGGAAGTAGTCTTTATACTTTGCCTCTCCCTCTAAAAATTTAATTTGCAATGGCGACCCTAATGTATCACATGTTTTCATCGTCTTCACTGTTATCTCTGGGATTCTACCACCTCATCTGCACCACCCGGAACCGCCTCAAATCCGCCGGAGACTACGTCGCCAAACCCTACCACCCTCTCTCCTTCATATCTCAACCGCATCTCCGCCGTCTACCTCTTTATCTCCTCCTTCTCTGCCTCCTCATTTCTCTGATCCATCAATCACTCGTCTCTTTGGATGCCGATCCTCTCCTCAAAGGTCATACTCCGGTGCATCGTTTCACCTCTCTCCAAGCCGCTGCTGTTGTTTTCTCGTTTCTAATACTCGTTGTTTTTCTCCTTATCTCTGAGTCAACTTCTCTTCTCCCGCTTCCTCCCGATCTGTTCTTCGCTTTAGCTGCTGCACTTTTCTACCTACAGTATTCGGTATCCGATTCTTCTGCTTCTGTTCAAACCTCCGATCTCCAGGCTAAATGTGATTCCGTTTCAGCTCGCATTTCTGCACTCTCCGCGTTACTTTGTCTCGTGATTGCTGTTCAACCTAGGCTTTTTCTGGCTGATGTTGCGTTAGCTGCTTCTATCTGTCTCCAGGGATTATGGGTTCTACAGACGGGACTTTCGCTTTATGTTGATGCGTTCATACCTGAGGGTTGTCATAAGTTGTTGGATGTTGTTACTGGGGTAGAAGGCTCAACCAAATGCGATTTGGAGGACTCTAAGCTCAGGGCTATTGCTATACTTGATTTGGCTTTTGTAGTTCATGTGATGTTTGTATTGCTCATTGTTAGTGTCACTTATGCTGCCGTTGCTAAAACTATTGGTATCAGGAGATTTGGTTCTTATGAGGCTCTTTCCAATGCTGACTCGAGTCATATCCAAATGAAGGCTATGACGGGAACTCAAGCTTGATTATCGTCGCATTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAGGAAGGGGGCGGCATTACATTCAGATTAGTCCATCATTCTCAGCTGTCATATCTCAATCAAGAAAAACAACAATCTAAAAACGAGCTAAGCCCGCCAAGAAGGCTTCCCAAAGCAGATATATATAGCTAAGTTCGGTTTTGTTTTTGCAGAGTTCAATCTTGTTGATGGAGTAGAAGCAGTTTCTTTTGTATGGACCCAATACTTTACATTAGACTGTATTTTTATTTGGACAAATGTTGTATGAAATGTCAAAAGGGGTATAATACACACTGGTTAACCACAATATGGTTTAAATATTTGTAATTTAAAGTTCAGCCATGGTTGCTGTACCAAATGAAGTATCCCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U570944" ref_strand="+" ref_description="SGN-U570944 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>gaaaaaaagaaaaaccgaactctctctctctactttctcctcttcttcttcctctttctctctctaaaactcactcgccgccgtgtgaactttcagttaccaccgttttcttctctcaaaagaggcaaaaagaagttcaaattttcattttcttttttctccaaaaaaatctatcttttttgtctactttttaaactctctttttgcttttgtgttgaaatctccatgaatttgctctgttttagttaaacagttgaatatctacaatacccatttctccatttttgaattcattgttttttcctccaaaaattcgatctttttttttcttttcttttgtgttcattctaatctccatgaatttgctctgttttagttaaactgttaattatctacaatacccatttctccatttttgaaaattcgatctttttatgcttttatgttcattcaaatcttcatgaatttgctctgttttagtaaacagctacaatacccatttctccatttttgaaaaatttgatctttttttgcttctgtgtttattgaaatctctataaatttgctctgtttttgctaaatagttgattatctacattacccatttctccattttcgaagatttattcattttttttatccaacggccaggattcgttgttctctgttactactaggtctctctctgtgattgtcagctttttaattttagttcttttgtcttctctaccgaaaaggcggaagagtttgaattcttataggctagggctatggagcctaatggacatagaaaaggtaacaaaagaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0244P17.1" temp_strand="+" temp_description="C05HBa0244P17.1  CU914756.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0244P17 sequenced_by:sanger upload_account_name:uk">
        <position start="31264" stop="34174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31564" g_stop="32293" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32294" i_stop="33794" i_length="1501">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33795" g_stop="33874" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="809" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0244P17.1" gen_strand="+" ref_id="SGN-U570944" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0244P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31564" e_stop="32293"/>
          <exon e_start="33795" e_stop="33874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAAGAAAAACCGAACTCTCTCTCTCTACTTTCTCCTCTTCTTCTTCCTCTTTCTCTCTCTAAAACTCACTCGCCGCCGTGTGAACTTTCAGTTACCACCGTTTTCTTCTCTCAAAAGAGGCAAAAAGAAGTTCAAATTTTCATTTTCTTTTTTCTCCAAAAAAATCTATCTTTTTTGTCTACTTTTTAAACTCTCTTTTTGCTTTTGTGTTGAAATCTCCATGAATTTGCTCTGTTTTAGTTAAACAGTTGAATATCTACAATACCCATTTCTCCATTTTTGAATTCATTGTTTTTTCCTCCAAAAATTCGATCTTTTTTTTTCTTTTCTTTTGTGTTCATTCTAATCTCCATGAATTTGCTCTGTTTTAGTTAAACTGTTAATTATCTACAATACCCATTTCTCCATTTTTGAAAATTCGATCTTTTTATGCTTTTATGTTCATTCAAATCTTCATGAATTTGCTCTGTTTTAGTAAACAGCTACAATACCCATTTCTCCATTTTTGAAAAATTTGATCTTTTTTTGCTTCTGTGTTTATTGAAATCTCTATAAATTTGCTCTGTTTTTGCTAAATAGTTGATTATCTACATTACCCATTTCTCCATTTTCGAAGATTTATTCATTTTTTTTATCCAACGGCCAGGATTCGTTGTTCTCTGTTACTACTAGGTCTCTCTCTGTGATTGTCAGCTTTTTAATTTTAGTTCTTTTGTCTTCTCTACGTAAGTTTTTTTCCCCTCTCTGACTTTACTTTTTCCAGTTCTTCTTTCTATAAATAGATTTTGTGTATGTATTTATGTATATATTTTTAGGTGAGAGAGTATATTACTCTTAACTTTAAAACTGGGATTTTTTTCTTGTAGCGTTTACTTAATGGAGTGGTAGGGACGATATGTTCGTACGTTGTTTGTATATGGGTAAAATTGTTTTTTAAAAATGTATATGTACTATTAGTAAATATTGAATCTCATTTGGCTTCTTGTTGGGTTTAGTTCTTCGTATTTTGAATTTCTTAGTGAAAATCTTAGCTTTGCGAATAGTTGATTGGCATGCATTATGTATGTTACATTTGGGATATTTTTGAATTTTGGGTTGTTTTTGTTCTCTTCAAATTTGTTTGCTTTTTGCTTTGCTAGTTAGACTCCAAGGTCCATTTTGTTTCTGGTGAACACCTTGTAGCTTTTTGGTGTGTTGGCTTCTTTGAATTTTGAATTTTCTTAGTAAAATTTTTGGCTCCACCAATATTCTTGGTAGTTACATGCGTTGGAAATGATCAATTTCGATTGGATTTGTGTGATTATGTGGATTTTAGTTGTAAAGAATTAGCTGGTTTTTGGTTAATTGGCATGACTGGTATGATAGTAGTTGATGTTCTTATTGTGCTAACAACCAACACTAAATTGTTCAAATTTGTTTCATTTCGCGTTGGTAGTTACAGTCTAGTTTGTTTCCGGGTATTGGAAAAAAGATTTGTTTTTGTTTTTGTTCATCTTTCTGTTATCTCCTTGTTTTTTTGTAAGTCACATGCATTAGTAATGATCAATTTCGATTGTATTTGTGTGGTTATTCAGACAGATTTTTGGTTAATTGGCATCACGGGTATGATTATTCTCCAATTAAAGAGGCTATATTGTGTGTGCATGATGTATTGCATTAGTTTATTCGAAGTTAGTCTTTAATCCGTATGCTTATGTATCTTTTAAGATTAGTTTTAATAGCGAGCTAAAACCTTGAACGAGTAAGAGCTACCCGTTGGTAATTTCCCTTTTCTTTTGGGGGAGGTGACAGATTTCAAGTATATTCTTTACTGAGGGTCTGTAGATTAAAATGTTGAGCAGACATGAGATTATTTGGATCCCTTTCTTTACTTATTTCTTGGATTCCTATCTTTACTTTGAATTTTCCTTTAGATCATGTTTCCTTTTAGTTTACTATTCTCAAAAAAAGGATTGTGTTTGCTTTTCCTACATTTCCTGTTTCCATAGGAAGTCTACTTACTCTTTAGGATATGCAGTAATGATTAAGTTATTATAAGTTTGTTGTATTTCTGAAGGTACCTTTGAAAAAATATATCGTCATTTGTATGTCATATAGTAGCTTGAGCCCAATAGGGAACATCCTGCTATGATTTTTTAATGGCCTCTTTGAAATATTTTCATTATTTTACACGCCTAGAATCACTATGTATTGGTAGTTGAAGTTACATTTATCTTGTTTCTGCAGCGAAAAGGCGGAAGAGTTTGAATTCTTATAGGCTAGGGCTATGGAGCCTAATGGACATAGAAAGGGTAACAAAAAGAATA</genome_strand>
        <mrna_strand>GAAAAAAAGAAAAACCGAACTCTCTCTCTCTACTTTCTCCTCTTCTTCTTCCTCTTTCTCTCTCTAAAACTCACTCGCCGCCGTGTGAACTTTCAGTTACCACCGTTTTCTTCTCTCAAAAGAGGCAAAAAGAAGTTCAAATTTTCATTTTCTTTTTTCTCCAAAAAAATCTATCTTTTTTGTCTACTTTTTAAACTCTCTTTTTGCTTTTGTGTTGAAATCTCCATGAATTTGCTCTGTTTTAGTTAAACAGTTGAATATCTACAATACCCATTTCTCCATTTTTGAATTCATTGTTTTTTCCTCCAAAAATTCGATCTTTTTTTTTCTTTTCTTTTGTGTTCATTCTAATCTCCATGAATTTGCTCTGTTTTAGTTAAACTGTTAATTATCTACAATACCCATTTCTCCATTTTTGAAAATTCGATCTTTTTATGCTTTTATGTTCATTCAAATCTTCATGAATTTGCTCTGTTTTAGTAAACAGCTACAATACCCATTTCTCCATTTTTGAAAAATTTGATCTTTTTTTGCTTCTGTGTTTATTGAAATCTCTATAAATTTGCTCTGTTTTTGCTAAATAGTTGATTATCTACATTACCCATTTCTCCATTTTCGAAGATTTATTCATTTTTTTTATCCAACGGCCAGGATTCGTTGTTCTCTGTTACTACTAGGTCTCTCTCTGTGATTGTCAGCTTTTTAATTTTAGTTCTTTTGTCTTCTCTAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAAAGGCGGAAGAGTTTGAATTCTTATAGGCTAGGGCTATGGAGCCTAATGGACATAGAAAAGGTAAC-AAAAGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U570943" ref_strand="+" ref_description="SGN-U570943 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157338866|emb|CAO42217.1| (e_value=5e-16) unnamed; (*ATH) AT1G15110.1 (e_value=2e-14) | Symbol: None | phosphatidyl serine synthase family protein, contains Pfam profile: PF03034 phosphatidyl serine synthase | chr1:5199094-5202170 FORWARD | Aliases: F9L1.4, F9L1_4; ">
      <seq>gcttatgtatcttttaagattagttttaatagcgagctaaaaccttgaacgagtaagagctacccgttggtaatttcccttttcttttgggggaggtgacagatttcaagtatattctttactgagggtctgtagattaaaatgttgagcagacatgagattatttggatccctttctttacttatttcttggattcctatctttactttgaattttcctttagatcatgtttccttttagtttactattctcaaaaaaaggattgtgtttgcttttcctacatttcctgtttccataggaagtctacttactctttaggatatgcagtaatgattaagttattataagtttgttgtatttctgaaggtacctttgaaaaaatatatcgtcatttgtatgtcatatagtagcttgagcccaatagggaacatcctgctatgattttttaatggcctctttgaaatattttcattattttacacgcctagaatcactatgtattggtagttgaagttacatttatcttgtttctgcagcgaaaaggcggaagagtttgaattcttataggctagggctatggagcctaatggacatagaaagggtaacaaaaagaatacggtttcccttcaaaacggtgatcttagcacattgaatattgatgatgagttggatccatggacttcctgggcgaacaaacctcacactattacgttgttgcttatcggtgcatgtttactcatttgggctagtggagctctcgactcacaaacacttctttcggtgatattgtggcatctgtgaaaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0244P17.1" temp_strand="+" temp_description="C05HBa0244P17.1  CU914756.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0244P17 sequenced_by:sanger upload_account_name:uk">
        <position start="32958" stop="34924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33258" g_stop="33998" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="741" r_length="741" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33999" i_stop="34557" i_length="559">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34558" g_stop="34623" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="806" r_length="65" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0244P17.1" gen_strand="+" ref_id="SGN-U570943" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0244P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33258" e_stop="33998"/>
          <exon e_start="34558" e_stop="34623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTATGTATCTTTTAAGATTAGTTTTAATAGCGAGCTAAAACCTTGAACGAGTAAGAGCTACCCGTTGGTAATTTCCCTTTTCTTTTGGGGGAGGTGACAGATTTCAAGTATATTCTTTACTGAGGGTCTGTAGATTAAAATGTTGAGCAGACATGAGATTATTTGGATCCCTTTCTTTACTTATTTCTTGGATTCCTATCTTTACTTTGAATTTTCCTTTAGATCATGTTTCCTTTTAGTTTACTATTCTCAAAAAAAGGATTGTGTTTGCTTTTCCTACATTTCCTGTTTCCATAGGAAGTCTACTTACTCTTTAGGATATGCAGTAATGATTAAGTTATTATAAGTTTGTTGTATTTCTGAAGGTACCTTTGAAAAAATATATCGTCATTTGTATGTCATATAGTAGCTTGAGCCCAATAGGGAACATCCTGCTATGATTTTTTAATGGCCTCTTTGAAATATTTTCATTATTTTACACGCCTAGAATCACTATGTATTGGTAGTTGAAGTTACATTTATCTTGTTTCTGCAGCGAAAAGGCGGAAGAGTTTGAATTCTTATAGGCTAGGGCTATGGAGCCTAATGGACATAGAAAGGGTAACAAAAAGAATACGGTTTCCCTTCAAAACGGTGATCTTAGCACATTGAATATTGATGATGAGTTGGATCCATGGACTTCCTGGGCGAACAAACCTCACACTATTACGTTGTTGCTTATCGGTGCATGTTTACTCATGTAAGTTTTTTAATGTACATGCTCTATATTCAGAGGTAAAATAATTGCTATGGACAGGAATAGTTGTTCTCTTCTTGGAGTACGGGGGTATTTTTTTTTTTTGGATAAGTGTCTTGGACTGTGAGGGAATTTGTAGAAGAAATTTTAGTTCTTGTGCGATTTCTTCTGTTCTTTCAGATGTTCGTACAATATTCTGTGTCATCAATGAATTAGATTTTCAGTCAGATGCATAGATTGTTGTAGCTTTTTTTTTCTTTTTCTTTTTCCTTTTGGTGATAATTATATAAAAGCTCTTCTTTTTGAGGATATGTAAAATTGTTTTATTAAAATTGGCTATTTTGTGAAATGAAATCCTTTTGCTGTACGTATGACACATCAAGTCGTTGCATTTTTAATTGAATTTTGTATTAATCAAAAGTTGGTTTTGGTATACAAAAGCACATGTGATCTTCAATTAGGATGCCTTACTGATTGCTTGCAAATTATTGGTTCCTTTCTTTTAGTTTTGCTTGCTAATGACAATACATTTTTTTACTTGCTTATTTTATTATGGTTGCAGTTGGGCTAGTGGAGCTCTCGACTCACAAAACACTTCTTCCGGTGATATTGTGGCATCTGTGAAAAG</genome_strand>
        <mrna_strand>GCTTATGTATCTTTTAAGATTAGTTTTAATAGCGAGCTAAAACCTTGAACGAGTAAGAGCTACCCGTTGGTAATTTCCCTTTTCTTTTGGGGGAGGTGACAGATTTCAAGTATATTCTTTACTGAGGGTCTGTAGATTAAAATGTTGAGCAGACATGAGATTATTTGGATCCCTTTCTTTACTTATTTCTTGGATTCCTATCTTTACTTTGAATTTTCCTTTAGATCATGTTTCCTTTTAGTTTACTATTCTCAAAAAAAGGATTGTGTTTGCTTTTCCTACATTTCCTGTTTCCATAGGAAGTCTACTTACTCTTTAGGATATGCAGTAATGATTAAGTTATTATAAGTTTGTTGTATTTCTGAAGGTACCTTTGAAAAAATATATCGTCATTTGTATGTCATATAGTAGCTTGAGCCCAATAGGGAACATCCTGCTATGATTTTTTAATGGCCTCTTTGAAATATTTTCATTATTTTACACGCCTAGAATCACTATGTATTGGTAGTTGAAGTTACATTTATCTTGTTTCTGCAGCGAAAAGGCGGAAGAGTTTGAATTCTTATAGGCTAGGGCTATGGAGCCTAATGGACATAGAAAGGGTAACAAAAAGAATACGGTTTCCCTTCAAAACGGTGATCTTAGCACATTGAATATTGATGATGAGTTGGATCCATGGACTTCCTGGGCGAACAAACCTCACACTATTACGTTGTTGCTTATCGGTGCATGTTTACTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGCTAGTGGAGCTCTCGACTCAC-AAACACTTCTTTCGGTGATATTGTGGCATCTGTGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U600570" ref_strand="+" ref_description="SGN-U600570 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gtaagttttttaatgtacatgctctatattcagaggtaaaataattgctatggacaggaatagttgttctcttcttggagtacgggggtattttttttttttgna</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0244P17.1" temp_strand="+" temp_description="C05HBa0244P17.1  CU914756.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0244P17 sequenced_by:sanger upload_account_name:uk">
        <position start="33699" stop="34403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33999" g_stop="34103" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0244P17.1" gen_strand="+" ref_id="SGN-U600570" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>105</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0244P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U600570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33999" e_stop="34103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGTTTTTTAATGTACATGCTCTATATTCAGAGGTAAAATAATTGCTATGGACAGGAATAGTTGTTCTCTTCTTGGAGTACGGGGGTATTTTTTTTTTTTGGA</genome_strand>
        <mrna_strand>GTAAGTTTTTTAATGTACATGCTCTATATTCAGAGGTAAAATAATTGCTATGGACAGGAATAGTTGTTCTCTTCTTGGAGTACGGGGGTATTTTTTTTTTTTGNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U584408" ref_strand="-" ref_description="SGN-U584408 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157338866|emb|CAO42217.1| (e_value=2e-102) unnamed; (*ATH) AT1G15110.1 (e_value=3e-99) | Symbol: None | phosphatidyl serine synthase family protein, contains Pfam profile: PF03034 phosphatidyl serine synthase | chr1:5199094-5202170 FORWARD | Aliases: F9L1.4, F9L1_4; (*SWP) sp|O08888|PTSS2_CRIGR (e_value=4e-37) Phosphatidylserine synthase 2 OS=Cricetulus griseus GN=PTDSS2; ">
      <seq>ggtgggacagcattattcttgacatattgatctgcaattggttcggcatatgggctggaatgcgcacgttccggtattttgacgggaaaacatacgagtgggttggcattagcaggcaaccaaatatcatgggcaaggtcaagcgaactcttggacaatttacgccagctcattgggataaagatgaatggcgtcctcttctaggtccatggcggtttattcaagtcctcagtctttgtgtcatattcttgactgtggagttaaatacattctttttgaagttctgtctttggattcctccaagaaatcctttgatagtgtatagattggttttctggtggttaattgcgttaccaacaatccgtgaatataactcgtatctacaggacagaaaaccagcgaagaaggtaggagcattttgctggctttcagtggcgatctgcattgttgagctcctaatctgtatcaagtttggacatggatcatttccaaacccaatgcccaaatgggtggtaattttatggtcatgtatcggtactggccttttgatgtcgttggctgcatggtcgtggcatttacatagaatgatgaggagaaagcacgattgagtttacgtttgcagttccccagccattctttattcctttgctttcatttgggtagagttcaaccatgttgtaaatacccattacctcgcaactgtatatggtttgcatttttttttaggttaaatcttagtacattttaaacatgtagtgaacctcaattctttttcaataggctaaaaagttcttgtttgttgagctgcaatattgttgcctcaaataaagaggaagtgctctttactaggagcgctcgtatgtatcatatgtgaaacttctgatgaaggatgaatgagtcgtattcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0244P17.1" temp_strand="+" temp_description="C05HBa0244P17.1  CU914756.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0244P17 sequenced_by:sanger upload_account_name:uk">
        <position start="36116" stop="38871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36416" g_stop="36460" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36461" i_stop="37201" i_length="741">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37202" g_stop="37293" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="137" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37294" i_stop="37488" i_length="195">
            <donor d_prob="0.783" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37489" g_stop="37742" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="391" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37743" i_stop="37852" i_length="110">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37853" g_stop="37941" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="480" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37942" i_stop="38140" i_length="199">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38141" g_stop="38571" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="911" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0244P17.1" gen_strand="+" ref_id="SGN-U584408" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0244P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584408" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36416" e_stop="36460"/>
          <exon e_start="37202" e_stop="37293"/>
          <exon e_start="37489" e_stop="37742"/>
          <exon e_start="37853" e_stop="37941"/>
          <exon e_start="38141" e_stop="38571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGGACAGCATTATTCTTGACATATTGATCTGCAATTGGTTCGGTGAGTATCTTGAAGCCGACTACCTTGTGCTCTTCTGAACTTTACATTCTTGACATGGTTACAACAAATTTGTATCATATTCACAATTTGCATCCATTTCTAGTTAATCAAGGGGTTAATGTTCCATCTCTTGCCTGTTGAAGTTCTTGTTCTTTTGAGTTCTGAAAAACAGTTCCAGATTGAGTGAAGTTTATCAAATGTATCGTCGAATTTGCTTGTTTTGATTTAGTTTGCTGTGAAATTACATTGTATTGAGATACAATATTGCCTTTCATACAGTAAAAAGTGGTTGTCCAGGTAAATAAAGACTACCACTGAAAGGAGAGTTAATCGCGAGAATGAAGTACTTGATTTTGTGTTCTGTTTGTGACACCCCATCCCCTCTAAATCATTCAGAGCAAAATTTTGATAACGACATGAATAACTAGGCTATGGGTTTATGGCGATCATCGAGCTCCATTTCACCAAAAATATTCTTATTACAGATGATGTGGAATTTAAGCCTTTGTATAGAGATTGTTAGATATAATGGATCTTCATGGGTGAAGTTTTTGAGGTTCGACATTCGTTGATGTGATTGTTTTTGTTTTTTTATTACAACGAATAGTTATTCTAACATTAAATCCATATTTTCTGCATATTTTGCTTACCTGTGGCTCAAGTCTGTTCATGGTCTTACAGATATGCTTTGTTCTCCTGGATTATTTTGCACTAAAATTACCTATTTGATTTCTTATGCAGGCATATGGGCTGGAATGCGCACCGTCCGGTATTTTGACGGGAAAACATACGAGTGGGTTGGCATTAGCAGGCAACCAAATATCATGGGCAAGGTATATCCCGTTAATTGCTACATTGGTCGTATATGGTTTCGAGGAATATCAGATATACTAAGTTGCGTTATACAAGTCCCATACAGTTAAAGTGGAAATATTAGGACGTTTATTCTGTACTAAAGTACTACAAACGGGGTTCCCAGCGAGAGATAGTTTTATTATTAAACACACAGCTTATTCTTTTTTTAATAGGTCAAGCGAACTCTTGGACAATTTACGCCAGCTCATTGGGATAAAGATGAATGGCGTCCTCTTCTAGGTCCATGGCGGTTTATTCAAGTCCTCAGTCTTTGTGTCATATTCTTGACTGTGGAGTTAAATACATTCTTTTTGAAGTTCTGTCTTTGGATTCCTCCAAGAAATCCTTTGATAGTGTATAGATTGGTTTTCTGGTGGTTAATTGCGTTACCAACAATCCGTGAATATAACTCGTATCTACAGGACAGGTATGCCCAACCACTCGCATTATGAAGTGAAATGTGTACTACTCCCATAAGCTCTTGTTCCTTTTCTTTATCTCTCACTTTACTTTTCCGTTTACTACCGTCATATTCAGAAAACCAGCGAAGAAGGTAGGAGCATTTTGCTGGCTTTCAGTGGCGATCTGCATTGTTGAGCTCCTAATCTGTATCAAGTTTGGACATGGTGAGCACTACATCTTGTTTTCTCTTTTTACGAGTATTTCAGCAAAGTTTATTTTATTTTGTAACCGAGAAATCCTGAGGACAAGCTATTAGCATTGTTCAAAACTCGGTGGACAATTAACATGTCCCTTGTGGCAAGACCAGATCCCCAGTGGCTTATGTATTCTCCGCTTTATGTTCTTCTTTGCTTCGTCTTTCAGGATCATTTCCAAACCCAATGCCCAAATGGGTGGTAATTTTATGGTCATGTATCGGTACTGGCCTTTTGATGTCGTTGGCTGCATGGTCGTGGCATTTACATAGAATGATGAGGAGAAAGCACGATTGAGTTTACGTTTGCAGTTCCCCAGCCATTCTTTATTCCTTTGCTTTCATTTGGGTAGAGTTCAACCATGTTGTAAATACCCATTACCTCGCAACTGTATATGGTTTGCATTTTTTTTTAGGTTAAATCTTAGTACATTTTAAACATGTAGTGAACCTCAATTCTTTTTCAATAGGCTAAAAAGTTCTTGTTTGTTGAGCTGCAATATTGTTGCCTCAAATAAAGAGGAAGTGCTCTTTACTAGGAGCGCTCGTATGTATCATATGTGAAACTTCTGATGAAGGATGAATGAGTCGTATTCATTCT</genome_strand>
        <mrna_strand>GGTGGGACAGCATTATTCTTGACATATTGATCTGCAATTGGTTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATGGGCTGGAATGCGCACGTTCCGGTATTTTGACGGGAAAACATACGAGTGGGTTGGCATTAGCAGGCAACCAAATATCATGGGCAAG...................................................................................................................................................................................................GTCAAGCGAACTCTTGGACAATTTACGCCAGCTCATTGGGATAAAGATGAATGGCGTCCTCTTCTAGGTCCATGGCGGTTTATTCAAGTCCTCAGTCTTTGTGTCATATTCTTGACTGTGGAGTTAAATACATTCTTTTTGAAGTTCTGTCTTTGGATTCCTCCAAGAAATCCTTTGATAGTGTATAGATTGGTTTTCTGGTGGTTAATTGCGTTACCAACAATCCGTGAATATAACTCGTATCTACAGGACAG..............................................................................................................AAAACCAGCGAAGAAGGTAGGAGCATTTTGCTGGCTTTCAGTGGCGATCTGCATTGTTGAGCTCCTAATCTGTATCAAGTTTGGACATG.......................................................................................................................................................................................................GATCATTTCCAAACCCAATGCCCAAATGGGTGGTAATTTTATGGTCATGTATCGGTACTGGCCTTTTGATGTCGTTGGCTGCATGGTCGTGGCATTTACATAGAATGATGAGGAGAAAGCACGATTGAGTTTACGTTTGCAGTTCCCCAGCCATTCTTTATTCCTTTGCTTTCATTTGGGTAGAGTTCAACCATGTTGTAAATACCCATTACCTCGCAACTGTATATGGTTTGCATTTTTTTTTAGGTTAAATCTTAGTACATTTTAAACATGTAGTGAACCTCAATTCTTTTTCAATAGGCTAAAAAGTTCTTGTTTGTTGAGCTGCAATATTGTTGCCTCAAATAAAGAGGAAGTGCTCTTTACTAGGAGCGCTCGTATGTATCATATGTGAAACTTCTGATGAAGGATGAATGAGTCGTATTCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U584653" ref_strand="+" ref_description="SGN-U584653 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>cagaagatattggaggcaagtaatttcactttttcttgtaattcacctcatgttctgttttaactttgcagggtaaacacaaaagtctatgcagtctaccagataacatgaaattcttttgcagaaagctgggattgacatgcaaggtcttggtgctcctgagatacttcaaaattttcactcccaaccgagctgcatagaggttagtggcacatggagctgccgttcctgaatatttctatgcaaacctaaagcagtaaagcgaaggatgccaatctggttgaatctccatgcaaattcaatcccttaaagcatgctaatagataccaggttgattctgttccatgtgttatgcctgatgtgcaaacggtcaaatgcaagttcttagattgtagacagaagcaaaggcaaaaaaaggggttatttcctatccgcctaacccctggtgagaagaattatcgatacctttgctggtggaggtgacaggttttgtggaatagtcgaggtgtgcaagttggcctagacaccaccagtgctttcacaaaggaattcacaagagcaaatacatttgagagttgacactgtgataaggggtatgtgaacttcactacacgaatgtgtaccaaaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0244P17.1" temp_strand="-" temp_description="C05HBa0244P17.1  CU914756.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0244P17 sequenced_by:sanger upload_account_name:uk">
        <position start="49033" stop="45527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48735" g_stop="48612" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48611" i_stop="48342" i_length="270">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48341" g_stop="48264" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="202" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48263" i_stop="48024" i_length="240">
            <donor d_prob="0.588" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48023" g_stop="47903" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="323" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47902" i_stop="46136" i_length="1767">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46135" g_stop="45827" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="632" r_length="309" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0244P17.1" gen_strand="-" ref_id="SGN-U584653" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0244P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48735" e_stop="48612"/>
          <exon e_start="48341" e_stop="48264"/>
          <exon e_start="48023" e_stop="47903"/>
          <exon e_start="46135" e_stop="45827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGATATTGGAGGCAAGTAATTTCACTTTTTCTTGTAATTCACCTCATGTTCTGTTTTAACTTTGCAGGGTAAACACAAAAGTCTATGCAGTCTACCAGATAACATGAAATTCTTTTGCAGGTTAGTGGTATTTAATTTTAGTTGAGGGTCTCTAATTATATAAAGTTTTCACGTTTTGGGTCTTCCCTCACATTTGTGTTCAGTTATAGTCTATCTTCATGTTACAATTCTAGCTTTTGGAAACACTAAGATATCTGGTAGGACTTGTAAAAGTACTACAGTCAATCTGTTTAGGTAGCATCTATCCATGTTCGCTTTACCACTCTCTCTGGTTAAGTAGAACCATTTTATTTACTTCAGGTCAACATTGTTGCTGTCTGTTTGGTGCAGAAAGCTGGGATTGACATGCAAGGTCTTGGTGCTCCTGAGATACTTCAAAATTTTCACTCCCAACCGAGCTGCATAGAGGTGTATGAGAGTGATTTATGCCTTCTTCTGTCTGCTCTGAACCTATGGACATTCTTAAGACTGGTGACTTGCATTTTCTTGAAAAGTACCCTTTGATTTTTAAGGGATTCTTGAAAAATTAATGAATTTTGAGAAACATTTTCCTGTATTCTTCTTCATTTAAGGTTAATTTCCTGTTTAGTTCTAGTACTAGCATGTAACTTTTGAGACCTATCTGACCAGATATCGATAATTTGTCAGGTTAGTGGCACATGGAGCTGCCGTTCCTGAATATTTCTATGCAAACCTAAAGCAGTAAAGCGAAGGATGCCAATCTGGTTGAATCTCCATGCAAATTCAATCCCTTAAAGCATGCTAATAGGTACTTTTTGAAGCTATTTAAAGTCTAACATTCTGCAGTACAGTTTCACCCTTTTCATGTAGTCTATGTTGGTTTACATGCTTCTCACTACTTGGTGATATACATGCCTTCTGAGTGAACTATTCTATATGGATATGTTTTCAGCTGCTGACAAATGCTAAGCTTAATCCATTAACTGATAGTGTTGGGAGCTGCTGTCTAAAATTCTAAGGATATGTTCTTACTCTTATCTTTTTTTGTTCTTTTTCTATTTTCAAATGTTTCCTGTTGGCCAAACTAAAAGTAGATGTGTCCTCCACTACTTTAGCAGTTATTGGTTATTCTTGAATATTTAATCCCAATTTAGCATATAGTTTCAAAGTTGTGCAATCTATCGTGGCACTAAACTTATGAGACATATAATGGAGCTGTGGAAAAAAGTGATGGTGCGTGAACTTAGGGACTCTGAATGAGTAACATATCCAGTTTAGATTTATGCCTGGTAGATCGACAATAGAGGCTATATTCTTGTAAGGATCTTTTTCCTCCATTGTGCCCTATCTTTAGTTGAGGCACAATGGAGGGAAAAAATCCATGTAGGTGATAGCTACTAGTTTGAGGATACACGCAAACTTGTGTCGCAAATATGTGGATTCAAAAATGGATGTGTGATTATACAAAGTTTAGATAAGACAATAGATGTCCACATTACAGAGAAGACACAAGTTACAGAAATTGAGGATAAATTGTGAGAAAGTTGGTAAGATGGTTTGGTCATATTGTACGTTGACCTCTAGGTGTACCGGTTCATAAGTGGGAAACCAAGGTGAGTGGAACTGCTAAAAGGGACTTCAAAATTTAGAAGGAAATTGTCTTGAAAAAAACCACTCTTGTGGAATCCATGCAAACTTGATGAAAAATGGAGCACAATGGAATATTGAAATCTGTATAGAAGTATACTCTAGGTCCAATATTTTCCAGAAATCTGTTAGTCCTCCCAAAGATTTATATTCATAAAAAAAATGTAAATAATTTATTTTACAACATGGATCAAAATAAGTTAAAATGGAGCGACATGGACAATGAGGATTCATATGCATGCTGGACCTAATTCCAAACTGTTACACTTATCGAGTATTAAACTTTGTTCACTCCTCGTTGCCTGTTTCTCTTGAAATATTTTTCTGGAAGGATGAAGACATTTTTCTTGTTAAGTTAATAAGCATTAATTACTGGGAGCGGGAATATTTCAAACTTGCTTAATTCTCTTGGGGGAAAATAAGTTGAAAATGAGAAGAATTTGGAATACAAGCAATCTAACAATAGATGCACCTCTACTGTGAGTGTGATGAATGTTGGACTGGAGTGTTTAACTAACTTTTTAGTTAAGATTTTCTCGTTTGGAATAACTATAGTTTTTACGTAGGGATGCAATTTGGACTACTCATATATGATGTAATTGTATTTCTCTATATATGGTTAGTGTTCTCTCCCTAGTGATGGATATAGGTGATTCTTGTAGATGATATCACCGAGATCCTTCCGCCTTACTTAGACGAGAGGAAACAGGTATCCGATTATAAATGAACCCATAAATCATAAAATGTGTTGACATGTGTTTCTGGATAGCCTATAGTGAACTGGTATCTCTATGATTCAATTAGTCGGTTGAGCACTTTGCCTTGTGTACACCTTTCCTGCTTTCTCATGACTCTCCACGCTCTATAAGTATTTACGTGCCTGTTGAGAACACAAGACCTGACATCTACACTGATTTTTGGTTTACAGATACCAGGTTGATTCTGTTCCATGTGTTATGCCTGATGTGCAAACGGTCAAATGCAAGTTCTTAGATTGTAGACAGAAGCAAAGGCAAAAAAAGGGGTTATTTCCTATCCGCCTAACCCCTGGTGAGAAGAATTATCGATACCTTTGCTGGTGGAGGTGACAGGTTTTGTGGAATAGTCGAGGTGTGCAAGTTGGCCTAGACACCACCAGTGCTTTCACAAAGGAATTCACAAGAGCAAATACATTTGAGAGTTGACACTGTGATAAGGGGTATGTGAACTTCACTACACGAATGTGTACGAAACCTTG</genome_strand>
        <mrna_strand>CAGAAGATATTGGAGGCAAGTAATTTCACTTTTTCTTGTAATTCACCTCATGTTCTGTTTTAACTTTGCAGGGTAAACACAAAAGTCTATGCAGTCTACCAGATAACATGAAATTCTTTTGCAG..............................................................................................................................................................................................................................................................................AAAGCTGGGATTGACATGCAAGGTCTTGGTGCTCCTGAGATACTTCAAAATTTTCACTCCCAACCGAGCTGCATAGAG................................................................................................................................................................................................................................................GTTAGTGGCACATGGAGCTGCCGTTCCTGAATATTTCTATGCAAACCTAAAGCAGTAAAGCGAAGGATGCCAATCTGGTTGAATCTCCATGCAAATTCAATCCCTTAAAGCATGCTAATAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCAGGTTGATTCTGTTCCATGTGTTATGCCTGATGTGCAAACGGTCAAATGCAAGTTCTTAGATTGTAGACAGAAGCAAAGGCAAAAAAAGGGGTTATTTCCTATCCGCCTAACCCCTGGTGAGAAGAATTATCGATACCTTTGCTGGTGGAGGTGACAGGTTTTGTGGAATAGTCGAGGTGTGCAAGTTGGCCTAGACACCACCAGTGCTTTCACAAAGGAATTCACAAGAGCAAATACATTTGAGAGTTGACACTGTGATAAGGGGTATGTGAACTTCACTACACGAATGTGTACCAAACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U563007" ref_strand="+" ref_description="SGN-U563007 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|147819072|emb|CAN69811.1| (e_value=2e-116) hypothetical; (*ATH) AT2G01110.1 (e_value=3e-108)  Symbol: None | thylakoid membrane formation protein / cpTatC (APG2), identical to thylakoid membrane formation protein (cpTatC) GI:15004994 from (Arabidopsis thaliana); contains Pfam profile PF00902: MttB family; identical to cDNA apg2 for cpTatC GI... ; (*SWP) sp|P54086|Y194_SYNY3 (e_value=1e-66) Uncharacterized protein sll0194 OS=Synechocystis sp. (strain PCC 6803) GN=sll0194; ">
      <seq>aggttacaccaggttctgaagatattttttggcaaagaccagtgaggaccaatcatcccttcaacgccaaattcagacaacaaaaccaaatcaaagaggaaaagaacccaaaaaacagaaagaaaagagatgggaagttcaagtgctctcatctcaaatcttcacctgactcaaactaactgtttcaaatgcttgaattcaagaacttctctgaatatcaaccccacaaggccaaaattgaatctttctagcagaaaatgcatcaaaaagttcagcagacttgtttgttctgctgttgaagattccatggagaaacagagagaaattagtggagcaaatgctagcagtcttggttcagctgttgaagatagacctgatgtcggtgatggctcaagcaagagtttatttaagaacggtggatcagatagtgaagggaatgttgtttatgatttcctttaccctaataaagagctgctaccagatgataaagaaatgactctatttgatcatttggaggagttgcgccagagactctttgtgtctgttttggccgttggtgctgctatagtgggatgttttgccttctcaaaagaacttatcttgattcttgaagcccctgttctagcacaaggtgttcgatttttgcaactaggtccaggagagttctttttcactactttaaaagtctcaggatatagtggccttctcttaggagctcctgtgattctctacgagatcatagccttcgttcttcctggtttgacaatgtcagaaagaagattcctggcaccaattgtccttggatcctctgttcttttctatgccggcattgttttctcacacttggtcctcactccagcagccttgaatttctttgttaattatgcagaaggggctgtggaatctttttggtccattgatcaatacttcgaatttgtgctcgtactcatgttcagtacagggttgtctttccaggttcctgtcattcaactgcttctgggacaaactggtcttgtgtcaggagatcaaatgctgtcgatttggagatacgtggtggtaggtgctgtcgttgctgctgcagtgctcacaccatcaactgatccccttactcaaatgcttctagctggcccacttttaggtctttacttgggtggagcatggatggttaagctttctgggcgataagcgattaagcctctgttctttgcatcaatataccaagtagtataatatgatcatgcatacagcatagggatccaagattcatgtagcatataaaggacatctgagtagaggatatatgatctgttttttgaatcatttgctattgtcactgttcaatgtgtataattaggaggttagctgacactccattcccaaagtcattatgttggatctcttcactaatatatgaaagaaaatagtcatgagtatgcattatattttctttctggcctcagatatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0244P17.1" temp_strand="+" temp_description="C05HBa0244P17.1  CU914756.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0244P17 sequenced_by:sanger upload_account_name:uk">
        <position start="67882" stop="73443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68182" g_stop="68557" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68558" i_stop="70224" i_length="1667">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70225" g_stop="70532" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="684" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70533" i_stop="71767" i_length="1235">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71768" g_stop="72058" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="975" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72059" i_stop="72651" i_length="593">
            <donor d_prob="0.756" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72652" g_stop="73143" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="976" r_stop="1467" r_length="492" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0244P17.1" gen_strand="+" ref_id="SGN-U563007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0244P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68182" e_stop="68557"/>
          <exon e_start="70225" e_stop="70532"/>
          <exon e_start="71768" e_stop="72058"/>
          <exon e_start="72652" e_stop="73143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTACACCAGGTTCTGAAGATATTTTTTGGCAAAGACCAGTGAGGACCAATCATCCCTTCAACGCCAAATTCAGACAACAAAACCAAATCAAAGAGGAAAAGAACCCAAAAAACAGAAAGAAAAGAGATGGGAAGTTCAAGTGCTCTCATCTCAAATCTTCACCTGACTCAAACTAACTGTTTCAAATGCTTGAATTCAAGAACTTCTCTGAATATCAACCCCACAAGGCCAAAATTGAATCTTTCTAGCAGAAAATGCATCAAAAAGTTCAGCAGACTTGTTTGTTCTGCTGTTGAAGATTCCATGGAGAAACAGAGAGAAATTAGTGGAGCAAATGCTAGCAGTCTTGGTTCAGCTGTTGAAGATAGACCTGGTAAGATTTAAACACAAAAGAGAAATACCCAAATGATTATTGTGTAAAAGATTGAGCTTTTAATGGTTTTCTGATATGGGAGTTTTGTATAAAGGTGTAGCAGTTGACTGGGTTGTTCCATTAGCTATTTATGGATCTTTATTGCTGGTTTTCTTGAGTTTCTGATATGGGTGTTTTGCATAAAGGTGTAATAGTTTATTTGATTGGTTCTTTAGCTAATTATGTTTCTTTATTTTGCTGAAAGTGTTTTGAATGGGTTTGTTTTATGATTTATTATGTAAAAGATTGAGCTTTTAATGGTCTTCTTGAGTTTTCTGATATGGATAGTTTGTATAAAGGTGTGATGTTTAACTAGATTGGTCCTTTAGCTAATTATGTTTCTTCATTAGCTGCAAATGTTCTGAAAGGGCTTGTTTTTCTGTTGTCATATCTAATTATTCTTATGTATCATAGAAATGATTGCTCTGATTGGTAAGACTATCAAATGGAGATCTAGGGAAGATTTGGGTTTTGGGGTATTTTGAGCAAGAGTCATTTAATAATTATGGCTATTAAACTTCAGACTTGTTATCCTTCCTATAACTTCACTAGTTATCTGTTGTTGTTGGTTGTCACTTGTTTGTTCTTTCATCTAAGTTTAAGGTTTGTGTTTGAAAAGAAATTGCTCCCCTTGTCCCAAGTCAATAATGTGAGTATGCATATCTTTTTCTATGAAAATGTGAGAAAATGCACACGTTCTTCACTTTTTAGTCATTTTATATAAACACTTTTTTTGAAATTGTTTTGGAGAAGTAAATTTCCCTAATGTAGTACTCCCTCTGTCCCAATTTGCGCGACACCCTTTCCTTTTTGGTCTGGCCCTAAAAGAATGCACCTTTTTATAATTTGAAACAACTTAACTTTAAAATTGCCTTTACCCTTACTAAAATGATTTATAGCCACATATGAAGATTGAAGCCTATTAGCTCTGTATTATTTTTGGTGTAAACAAGTAGTCTTAAATAGCTCAGAAGTAATCAGCACAACTATAGACTGGCTGTAACTTGGTCATTATAGGATGCTATGTAATTACAACACTTTTGGAGGGGAACTACACTTTTGAGGTAGTATACCTGTGGATAAATATAGACTAACTGTTACTTTTCTCAAAAATAAAAAATGATTTATAGCCACACAGATGTCTAAGGTTTATTTTAGATCACAAGCTGCAAAAGTCTTCCTTTTATTCTTAAACTATGCGCCAATCTAATGGTTCACATGAGTTGGGATGCAGGGAATATATGTATATATGTTTGTTAACGCATTTTGGCAAGAGCAAATTGTTATGCCGTGCCAAAGTGAGAGTGTTACACAGGGGGAGAACTAATTGAACTGTCTAATATCTGCTGGAAATGACTACCCATTCTGCTTTTAAGGAAAGAATGTGCACAAAATGTTAGTTTACTAGTTCCCTTTCTTATACATACTCTGCTTATTTTGTGGGCGTACAGTTGTCTGAGCACTATTCAACACTTGTATGATGCAAGTCTCCAGAACAGTACCTTTATTATACATAAAATTGTTCTTTTTTTATCCTCTTTCTCAGTGTGCATATTGGTAATTGTCCATGACAGCAAAAAAAAATCATGCATTTAGATTGTAATAATGCATTTGTTTTTGAAATCCAGATGTCGGTGATGGCTCAAGCAAGAGTTTATTTAAGAACGGTGGATCAGATAGTGAAGGGAATGTTGTTTATGATTTCCTTTACCCTAATAAAGAGCTGCTACCAGATGATAAAGAAATGACTCTATTTGATCATTTGGAGGAGTTGCGCCAGAGACTCTTTGTGTCTGTTTTGGCCGTTGGTGCTGCTATAGTGGGATGTTTTGCCTTCTCAAAAGAACTTATCTTGATTCTTGAAGCCCCTGTTCTAGCACAAGGTGTTCGATTTTTGCAACTAGGTCCAGGAGAGTTCTTTTTCACTACTTTAAAAGTAAGAATGCATCTTTAATTAAATCTCCTTTGCCACTCATTTCCTTAACCATTTGACCACAATAACCTTTTTCCGTGAACTAGTTAGATATATCTCATGTTCAAGTCCTTTTTAAGGATTAAAAGTTGTTCGCTGTGCCTGATATCTGGCTTGTATGCTGAAATATCAAATATGTACTTCCTTTTGATTGAATGTCATAATTTCTGTTCGGAATATTTATAATGAGTATCTTACCCCTTATAGTTTGTAAAATTTCAACTGCTCTCTTTTAACACATCTTGATTTCTAAAGAAACCTACAAGTAATCTATCCACGTACATTAAACTAATCCTCACTTAAAGTGCATGCTATTGTAATGTCAATATACTTATCTTCAAAATCATGTATGAGTCAAACTGTTTATTACATATAAATGCAAGTAGTAGTTAATGTACCTATACATAGATGCGGGTGTTCAGATAGCGCATGCTGAATATGTCTAAAAAATGGAAGTTATGTAACACAGTGTTTTGCTATTTTTGGTATCGGAAAGTTGGGACCAGTTGGCATACTTTTTTTTTTGAGACAGTAACAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCCACAACAAGTTACAGATTCCTAATTACAATTGTGGAGAGTACCAGGAAGATCTAATCCTATAGAAAAATTTACAAGGAATCTAAAACATCTTTAATTGATTCTAGATCTACCATGTACTCCTGTTTACATCAAAAAAGAAACAAAAGTAAGCAGTTCATCTTAATCTTCCAGATGGAATTGCTCTTGTTTTGGAAGTAATAATAGTAAATGAGTGCTGGTGATGTTTGAAAAAGGAATCCAACAGGCTAGACTGTCTAATTGAATGCTTCAACTCAGGGCACTTGTGGTACTGAAGTGCTCTTTTTCTCTCTCTCACGCATTAATCTTCTATTACTGAAGTATTGAGTTGGCATCTTCTGATTATTAATTCTATTATGTGTTTATTAATGGCTTAGCAATATGTTTATAATAGCTATATTCATTCATGGAACTTCTGAATGCTTACTTAAAATTATTTCTCTAATATATTAAGGAAGCTAATGATTAATAAAAAGTTCAAACCTCAGATTAGAGTTGGTCACAACAACATGATTTTCGTGTCGTTGGGATTAACTTTAAAGTTGGAATTCTTACTACCGTGGCATGTTCATTTGAGTAACTATACTATTCACACTTTTGGTGTAGGTCTCAGGATATAGTGGCCTTCTCTTAGGAGCTCCTGTGATTCTCTACGAGATCATAGCCTTCGTTCTTCCTGGTTTGACAATGTCAGAAAGAAGATTCCTGGCACCAATTGTCCTTGGATCCTCTGTTCTTTTCTATGCCGGCATTGTTTTCTCACACTTGGTCCTCACTCCAGCAGCCTTGAATTTCTTTGTTAATTATGCAGAAGGGGCTGTGGAATCTTTTTGGTCCATTGATCAATACTTCGAATTTGTGCTCGTACTCATGTTCAGTACAGGGTTGTCTTTCCAGGTTTGGCTTGTGCTGTTTTCTTTTCTGCTTGAGTATATAAGAACATGCTGCATGATAAACAGTTTAGTGGTAGGAAATTTTGTTTTTCAATCTAGAGCTTCTCAAATCTTTGGCCATACTTCACTTTTGTGTTCTAGGTTGGCTCGACTTGTAACTAATGCTTGCTTAAAAGCATCTTGGCCATAATTGAGCAATGTTTTGCGATAAAAATAGAAGCGAGTATAAGAAATATTAAGCACCCAAGGGTGTGGCCTAGCGGGCAAATGAAGTGACTGGAATTCATAAATCAAAATTCCAATCCGGTAGAAAGAAAAAATGTTAGGCAATTTCTTCTCATCTACCTAAGCTTTGATGGACAGAGTTACCTAGTACATGTGTTGGTCGGAGGTAATATGTACCTGGTGGAATAGAGGTACGCTTAAACAAGTGAGAATGATGATTTTCAGTGGTGAAGCTTTCAAGATTCTAGCATGGTCTTCATCGTAGTGAAAATATTTGTGAATTCACACTATTGTATGATGTTGATCGGCATCCTCTTTATATCCAAATTGCTTTAATCCAATAAGCAACTCTATAATTACTCTCTTTTACAGGTTCCTGTCATTCAACTGCTTCTGGGACAAACTGGTCTTGTGTCAGGAGATCAAATGCTGTCGATTTGGAGATACGTGGTGGTAGGTGCTGTCGTTGCTGCTGCAGTGCTCACACCATCAACTGATCCCCTTACTCAAATGCTTCTAGCTGGCCCACTTTTAGGTCTTTACTTGGGTGGAGCATGGATGGTTAAGCTTTCTGGGCGATAAGCGATTAAGCCTCTGTTCTTTGCATCAATATACCAAGTAGTATAATATGATCATGCATACAGCATAGGGATCCAAGATTCATGTAGCATATAAAGGACATCTGAGTAGAGGATATATGATCTGTTTTTTGAATCATTTGCTATTGTCACTGTTCAATGTGTATAATTAGGAGGTTAGCTGACACTCCATTCCCAAAGTCATTATGTTGGATCTCTTCACTAATATATGAAAGAAAATAGTCATGAGTATGCATTATATTTTCTTTCTGGCCTCAGATATGAA</genome_strand>
        <mrna_strand>AGGTTACACCAGGTTCTGAAGATATTTTTTGGCAAAGACCAGTGAGGACCAATCATCCCTTCAACGCCAAATTCAGACAACAAAACCAAATCAAAGAGGAAAAGAACCCAAAAAACAGAAAGAAAAGAGATGGGAAGTTCAAGTGCTCTCATCTCAAATCTTCACCTGACTCAAACTAACTGTTTCAAATGCTTGAATTCAAGAACTTCTCTGAATATCAACCCCACAAGGCCAAAATTGAATCTTTCTAGCAGAAAATGCATCAAAAAGTTCAGCAGACTTGTTTGTTCTGCTGTTGAAGATTCCATGGAGAAACAGAGAGAAATTAGTGGAGCAAATGCTAGCAGTCTTGGTTCAGCTGTTGAAGATAGACCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGGTGATGGCTCAAGCAAGAGTTTATTTAAGAACGGTGGATCAGATAGTGAAGGGAATGTTGTTTATGATTTCCTTTACCCTAATAAAGAGCTGCTACCAGATGATAAAGAAATGACTCTATTTGATCATTTGGAGGAGTTGCGCCAGAGACTCTTTGTGTCTGTTTTGGCCGTTGGTGCTGCTATAGTGGGATGTTTTGCCTTCTCAAAAGAACTTATCTTGATTCTTGAAGCCCCTGTTCTAGCACAAGGTGTTCGATTTTTGCAACTAGGTCCAGGAGAGTTCTTTTTCACTACTTTAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAGGATATAGTGGCCTTCTCTTAGGAGCTCCTGTGATTCTCTACGAGATCATAGCCTTCGTTCTTCCTGGTTTGACAATGTCAGAAAGAAGATTCCTGGCACCAATTGTCCTTGGATCCTCTGTTCTTTTCTATGCCGGCATTGTTTTCTCACACTTGGTCCTCACTCCAGCAGCCTTGAATTTCTTTGTTAATTATGCAGAAGGGGCTGTGGAATCTTTTTGGTCCATTGATCAATACTTCGAATTTGTGCTCGTACTCATGTTCAGTACAGGGTTGTCTTTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGTCATTCAACTGCTTCTGGGACAAACTGGTCTTGTGTCAGGAGATCAAATGCTGTCGATTTGGAGATACGTGGTGGTAGGTGCTGTCGTTGCTGCTGCAGTGCTCACACCATCAACTGATCCCCTTACTCAAATGCTTCTAGCTGGCCCACTTTTAGGTCTTTACTTGGGTGGAGCATGGATGGTTAAGCTTTCTGGGCGATAAGCGATTAAGCCTCTGTTCTTTGCATCAATATACCAAGTAGTATAATATGATCATGCATACAGCATAGGGATCCAAGATTCATGTAGCATATAAAGGACATCTGAGTAGAGGATATATGATCTGTTTTTTGAATCATTTGCTATTGTCACTGTTCAATGTGTATAATTAGGAGGTTAGCTGACACTCCATTCCCAAAGTCATTATGTTGGATCTCTTCACTAATATATGAAAGAAAATAGTCATGAGTATGCATTATATTTTCTTTCTGGCCTCAGATATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U584402" ref_strand="+" ref_description="SGN-U584402 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157338870|emb|CAO42221.1| (e_value=2e-124) unnamed; (*ATH) AT1G22970.1 (e_value=9e-102) | Symbol: None | expressed protein | chr1:8130705-8132197 REVERSE | Aliases: F19G10.8, F19G10_8; (*SWP) sp|Q5U4I3|CCDB1_XENLA (e_value=2e-14) Cyclin-D1-binding protein 1 homolog OS=Xenopus laevis GN=ccndbp1; ">
      <seq>gaattgactattctgtctgcccaataagtgaagggttttagaaagagagaaaataatgggaaaagcagcgaaggagcaattgaatagagctctgagtgagcatctaaacaccatttatgaaactcttgaggcattgtgtcaaacaccatcttcatctcttgaaaaagtcagctggaaagaggttattcagatgggtgaacagctttataaacaagccactatggttggaatgctttggactggagaagctccagaggttaaagcactggaggagaacatggcttcatattttaatatgctgcaagggctccttttgctttcccactcaagtacagttggcggaggacctaccctgtgttcctgcattcatgcatccattaaacaagttgttgatagcagtttcatgttaatgaaagagtccgtgtcttcatatggatctaacaacaaaactcagaaattatcaatcccgcagttggtgggcactgtctgggaagcttgttctgctcttaagaagactccagccacaaatattactgctataggtcgagcaatgacacaacttgctgtttccatgaaggatgtacttcgtgaaatgaatgaactgaagccagcgtcatctgatgttggagatgaatcttctgttcaagattctgctgaaggagatcaggatagtgatgattcatttgcaggtgatctaggcaatgatctttctgcggaggaaatggaaattgctcgtttgactactgacgtggtgtctgcaacacttgtggtcattaaagaacttattcgctccattacaagcttgcttaagcaggaaagtactgcggatactgctacttttgtaccctctctagagacactgctgaaactttctcaagaaatcggactgcaaattgatgaacttggagcttctctgtatcctccacaagaaatttcttcattgaagactgctatagagaagatatcatgtgctactgatgaaatattggtggagctggaaaaacttaaaggatgttctgaagattttgttaaaacatgcaatggtttgcggagctcattgaaacaactggaagcagaattagatcactcagatgcaactgatacaatgcccaagatagaaaacctcgcgatcgcgtaattatagtaaaggggaaaggttaagggaggaaaaatatgcttttgaatgagcttctttgattgtagctatgggcatcgaattgaaagttcttacatttatttggatatgttattgttcttttttgtgaccttatgccatcaaatgaatatagtgtgttgtcaaaccagctgcatattggagtaatactgtgcaaatatttctataacaatcatctatatatagcaatatttggctgtaatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0244P17.1" temp_strand="-" temp_description="C05HBa0244P17.1  CU914756.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0244P17 sequenced_by:sanger upload_account_name:uk">
        <position start="77134" stop="73048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76854" g_stop="76725" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76724" i_stop="76610" i_length="115">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76609" g_stop="76516" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="224" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76515" i_stop="75307" i_length="1209">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75306" g_stop="75097" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="434" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75096" i_stop="74294" i_length="803">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74293" g_stop="73348" g_length="946"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="1380" r_length="946" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0244P17.1" gen_strand="-" ref_id="SGN-U584402" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0244P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76854" e_stop="76725"/>
          <exon e_start="76609" e_stop="76516"/>
          <exon e_start="75306" e_stop="75097"/>
          <exon e_start="74293" e_stop="73348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCACTATTCTGTCTGTCAAAAGAGTGAAGGGTTTTAGAAAGAGAGAAAATAATGGGAAAAGCAGCGAAGGAGCAATTGAATAGAGCTCTGAGTGAGCATCTAAACACCATTTATGAAACTCTTGAGGTTTAGTATTTTTTTTAATTTTTTTTTTTTAGGTTTTAATTATTATTTTTGCAGTTTTCTATTATATTTGTATGATTTGATTTATGAAAATTGAGTTTTTCTTTTGTTTTTGCAGGCATTGTGTCAAACACCATCTTCATCTCTTGAAAAAGTCAGCTGGAAAGAGGTTATTCAGATGGGTGAACAGCTTTATAAACAAGCCACTATGGGTCAATTTCTTTTTTCTCTTATGTAGTTTTACTTTTCAAAAGTTCCAATTTTTATACCCCTTTGCCCCAAATTTATTTGTCATGTTTTATTCGGGAGTTAACTCGACTGATATTTGAAGCTAAATTGGATTAGATTAACTTGATTTCTTACAATTAGATGTTGCAACTTTTCTCGTGTTAATTTTGATGAAAAAATCATTTTTTAAAATGTGGGTTAAAGTTTAAATAGTGTGACTTTCGTGAAGCAAAACATGATGAATAATTTGGGACGGAGGGGATACATTATCTATGGCATCTTTGTACTATTGATGTCTTTGTTGACAGTTTTAGGCATTAACAGTATCTGTTTCCACATTAGAGAATTTATTTCAGTCATCGTCAATTTAATATTGTCTATATATGTTTGATGGTGAGGTATAAGTACTTATATGTTGTAGGTAAGCTAGTAGAGACTATCCATAAAAGAGGAAGTAAATATAGATTTGATTATCAGAAACCTATCCTAAAAGAAGATGAATGAGGCCTTCTTTAATTACGCAAAAGTGTAAATATTTAAATCAGCTGATGATTACATATATTACCTTTCAAAACTTATTTGAAGTTTTTGAATCCTTGTGAGATGAACGAGGCCTTTTTTTAATGTAAATATTGATATCAGCTAATGAATACATATATTACCTTTTTTTTTAAATAAGAAGGGAGACAGAAGAGATTATCACTACAGAAGGAAGCCTAAAGATGTTAAAACTTTTAGAGATCAAGGGCAAATTGCATCGTCATTTGTTTAAAAAGAAGAAAGCAGTCCGAGCATATATTTTGCATTGAAAACTGAGATCGTTATAGTGTTTTTTGATCTTCGACTATGTATATGTATATGCAATTCCAAGTATTAATATCTAGAGGTCCATTGCAAAATACAAACAGAAGGAGCTGATTCATTTCTTCTGAATGTTTAGAAATATACTTGTTATACTAGTGAAAAGGTTGAGCGTGAAATAATACTTGTTATACTAGTGAAAAGGTTGAGCGTAGAAACGGCTTTGTGTGTCCTTGCCTTCTGTTCTTTCCTTTGTTTTTCTTTTGATTTTTCGGGAGGATCAAGGGAGGGTTCCAATTGCTGACTAACTGAGCAGTCGTACTTTGTAAGTCTCAGGCGTTCACCTACCAGATAGTGTTGGTAATTGACAGTTTCTTTTCATTCTGGTGCAGTTGGAATGCTTTGGACTGGAGAAGCTCCAGAGGTTAAAGCACTGGAGGAGAACATGGCTTCATATTTTAATATGCTGCAAGGGCTCCTTTTGCTTTCCCACTCAAGTACAGTTGGCGGAGGACCTACCCTGTGTTCCTGCATTCATGCATCCATTAAACAAGTTGTTGATAGCAGTTTCATGTTAATGAAAGAGTCCGTGTCTTCATATGGTATGTATCTATCTATCTGTATGTATTCTCTGCTCAGCCCAAGTCCATGAACATATGAAAAGCTTACATATACAAAATGCTAGGAAGTATAGTGTATCCGAAATGGAAAAAGGTCATCATATTGTTTTACATATAGTGTTTATCTTTTCTCAAGTTATGCATCTTTCACACATCAGCGTTTACCCACTTCAATCCTTTTTAGTATATGGGGATTCACCAGTGTAATCCCTCTTTTCTATCATATGTTATAGTTTCATAAAGAAAATAGAAAGAGCATCAAAGACAGGACTTAGCTAGTTTTACCTAATGACTGAGCTACTAGACCTATTAGTTACTGCTTGTGTTATTTTTAAATTTTTTTGGTAATTTCTAAATGAAGTCATAATGGTCTTGCCTTACTTGGATAGCATGTTGAAAATTATGAGACAAATTATTTGAGTTCAGCCAAAGAGCTTATTACCCCAAAGCTAGTGGCAGTTACCTAACAGTTGAACATCCAAATTAGTGTCCATGTTTGGCTGATGTGCTTTCATCAAAATCTCAAAAGCGCATATACAGTACATGTTGAACCATCTATCCCACAAAAAAAAAATGGAGGCAGAAGAAATCAGTTAATGGTAGATAGCTCCATTTGCTTGGGTGTAAAAAGTCATTCATCTCACTTTTGTTCTGCTTCTAGTTGTGGCATATTGCTTTTCAGTTTCATTCATCACTCGTATCTGCTGCATCTACTCCTCGTGTATTGATTTTCTTTTAATAGTGATATGGACCAACTATGTTTGCTGCCCAAAATGGTTGTGCAGGATCTAACAACAAAACTCAGAAATTATCAATCCCGCAGTTGGTGGGCACTGTCTGGGAAGCTTGTTCTGCTCTTAAGAAGACTCCAGCCACAAATATTACTGCTATAGGTCGAGCAATGACACAACTTGCTGTTTCCATGAAGGATGTACTTCGTGAAATGAATGAACTGAAGCCAGCGTCATCTGATGTTGGAGATGAATCTTCTGTTCAAGATTCTGCTGAAGGAGATCAGGATAGTGATGATTCATTTGCAGGTGATCTAGGCAATGATCTTTCTGCGGAGGAAATGGAAATTGCTCGTTTGACTACTGACGTGGTGTCTGCAACACTTGTGGTCATTAAAGAACTTATTCGCTCCATTACAAGCTTGCTTAAGCAGGAAAGTACTGCGGATACTGCTACTTTTGTACCCTCTCTAGAGACACTGCTGAAACTTTCTCAAGAAATCGGACTGCAAATTGATGAACTTGGAGCTTCTCTGTATCCTCCACAAGAAATTTCTTCATTGAAGACTGCTATAGAGAAGATATCATGTGCTACTGATGAAATATTGGTGGAGCTGGAAAAACTTAAAGGATGTTCTGAAGATTTTGTTAAAACATGCAATGGTTTGCGGAGCTCATTGAAACAACTGGAAGCAGAATTAGATCACTCAGATGCAACTGATACAATGCCCAAGATAGAAAACCTCGCGATCGCGTAATTATAGTAAAGGGGAAAGGTTAAGGGAGGAAAAATATGCTTTTGAATGAGCTTCTTTGATTGTAGCTATGGGCATCGAATTGAAAGTTCTTACATTTATTTGGATATGTTATTGTTCTTTTTTGTGACCTTATGCCATCAAATGAATATAGTGTGTTGTCAAACCAGCTGCATATTGGAGTAATACTGTGCAAATATTTCTATAACAATCATCTATATATAGCAATATTTGGCTGTAATGGC</genome_strand>
        <mrna_strand>GAATTGACTATTCTGTCTGCCCAATAAGTGAAGGGTTTTAGAAAGAGAGAAAATAATGGGAAAAGCAGCGAAGGAGCAATTGAATAGAGCTCTGAGTGAGCATCTAAACACCATTTATGAAACTCTTGAG...................................................................................................................GCATTGTGTCAAACACCATCTTCATCTCTTGAAAAAGTCAGCTGGAAAGAGGTTATTCAGATGGGTGAACAGCTTTATAAACAAGCCACTATGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAATGCTTTGGACTGGAGAAGCTCCAGAGGTTAAAGCACTGGAGGAGAACATGGCTTCATATTTTAATATGCTGCAAGGGCTCCTTTTGCTTTCCCACTCAAGTACAGTTGGCGGAGGACCTACCCTGTGTTCCTGCATTCATGCATCCATTAAACAAGTTGTTGATAGCAGTTTCATGTTAATGAAAGAGTCCGTGTCTTCATATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTAACAACAAAACTCAGAAATTATCAATCCCGCAGTTGGTGGGCACTGTCTGGGAAGCTTGTTCTGCTCTTAAGAAGACTCCAGCCACAAATATTACTGCTATAGGTCGAGCAATGACACAACTTGCTGTTTCCATGAAGGATGTACTTCGTGAAATGAATGAACTGAAGCCAGCGTCATCTGATGTTGGAGATGAATCTTCTGTTCAAGATTCTGCTGAAGGAGATCAGGATAGTGATGATTCATTTGCAGGTGATCTAGGCAATGATCTTTCTGCGGAGGAAATGGAAATTGCTCGTTTGACTACTGACGTGGTGTCTGCAACACTTGTGGTCATTAAAGAACTTATTCGCTCCATTACAAGCTTGCTTAAGCAGGAAAGTACTGCGGATACTGCTACTTTTGTACCCTCTCTAGAGACACTGCTGAAACTTTCTCAAGAAATCGGACTGCAAATTGATGAACTTGGAGCTTCTCTGTATCCTCCACAAGAAATTTCTTCATTGAAGACTGCTATAGAGAAGATATCATGTGCTACTGATGAAATATTGGTGGAGCTGGAAAAACTTAAAGGATGTTCTGAAGATTTTGTTAAAACATGCAATGGTTTGCGGAGCTCATTGAAACAACTGGAAGCAGAATTAGATCACTCAGATGCAACTGATACAATGCCCAAGATAGAAAACCTCGCGATCGCGTAATTATAGTAAAGGGGAAAGGTTAAGGGAGGAAAAATATGCTTTTGAATGAGCTTCTTTGATTGTAGCTATGGGCATCGAATTGAAAGTTCTTACATTTATTTGGATATGTTATTGTTCTTTTTTGTGACCTTATGCCATCAAATGAATATAGTGTGTTGTCAAACCAGCTGCATATTGGAGTAATACTGTGCAAATATTTCTATAACAATCATCTATATATAGCAATATTTGGCTGTAATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U599539" ref_strand="+" ref_description="SGN-U599539 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147787625|emb|CAN78227.1| (e_value=3e-41) hypothetical; (*ATH) AT1G15170.1 (e_value=3e-38)  Symbol: None | MATE efflux family protein, similar to ripening regulated protein DDTFR18 (Lycopersicon esculentum) GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family | chr1:5220636-5222968 FORWARD | Aliases: F9L1.11,... ; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=5e-17) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12; ">
      <seq>gcctcgtgccgagttagcgcagctgtatttgctagtcggaacgtatttggctacattttcagcaacgagaagagaagtcgtggactatgtagcaaagatggctcctcttctatgtctatcagtcattactgacagtcttcaaagaaccctttcaagtgtcgcgaggggatgtggttggcagcatatcggagcctatgtgaatcttgcttcattttacctttgtggcattcctatcgctgcttcattagcgttttggctcaactttcgaggaaaaagcctgtggatgggcatactttctggtgcagctctgcaaactattctactttctgtgataacatgctgcacaaactgggaaaaacaagctgcaatggcaagggagaggcttcatgctgatgaaaaatcatcagtagataacgtactatcgtaaaaaaatgcagaaaattctcttcgaaatactcgagtaatgttaattggtttattgaggcatctttgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0244P17.1" temp_strand="-" temp_description="C05HBa0244P17.1  CU914756.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0244P17 sequenced_by:sanger upload_account_name:uk">
        <position start="79543" stop="77808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79252" g_stop="79099" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79098" i_stop="78448" i_length="651">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78447" g_stop="78108" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="495" r_length="340" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0244P17.1" gen_strand="-" ref_id="SGN-U599539" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0244P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79252" e_stop="79099"/>
          <exon e_start="78447" e_stop="78108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACGATACTAGTTAGCGCAGCTGTATTTGCTAGTCGGAACGTATTTGGCTACATTTTCAGCAACGAGAAG-GAAGTCGTGGACTATGTAGCAAAGATGGCTCCTCTTCTATGTCTATCAGTCATTACTGACAGTCTTCAAGGAACCCTTTCAGGTTAGACTTTCTTTACATCAAGTTACTACAAGAATATGTAACTACTACTAGTGGTGAACCACGTTTTCAACCGAGCCTCCTTTTGCCGGTAAACTATACTCCCTGTGTCCCAATTTGTGTGGTATTTTTTGTTTTACGAGATTCGGTTTGACTCATCTTTGAAGCTAACATTAAATTAGATCAACTCTTAAAATTAAAATTTGGATATTCAAAGACTATACTAAAGTACTATAAGTGCAATTCCTCTCATGTCAATATGATTAAAAAATACCCTTTAAAGTAATCATCAAAGTTAACGTAGTTTGAATCTTGAAAAAACGAAAAATATCTCATAAATTGGACACAGTAAGATACTACAAGAAAAGGTAACAGACACATTTACCAAAGGAGGGTCAACTGAGTATCCTTTGCCAGAAAATTATACTAACATATAGAGGTTAAGACTCTTTCACGCCAATTTACTACAACAAATACCTTTGGCGAAGCCTCATTTACTTGGGGGGTTCATCTGAATCCTTTACTGGAAAATTGTACTATGTATATTGGTGAATTCTTTTCTAACATGCGTATATATAAATTGTTGACTCTGCCACTGACAGATATATGACAAGAACGAACGTATGACTAATTGTGGCATTATGCACATTGTAGGTGTCGCGAGGGGATGTGGTTGGCAGCATATCGGAGCCTATGTGAATCTTGCTTCATTTTACCTTTGTGGCATTCCTATCGCTGCTTCATTAGCGTTTTGGCTCAACTTTCGAGGAAAAGGCCTGTGGATGGGCATACTTTCTGGTGCAGCTCTGCAAACTATTCTACTTTCTGTGATAACATGCTGCACAAACTGGGAAAAACAAGCTGCAATGGCAAGGGAGAGGCTTCATGCTGATGAAAAATCATCAGTAGATAACGTACTATCGTAAAAAAATGCAGAAAATTCTCTTCGAAATACTCGAGTAATGTTAATTGGTTTATTGAGGCATCTTTGCTC</genome_strand>
        <mrna_strand>GCCTCGTGCCGAGTTAGCGCAGCTGTATTTGCTAGTCGGAACGTATTTGGCTACATTTTCAGCAACGAGAAGAGAAGTCGTGGACTATGTAGCAAAGATGGCTCCTCTTCTATGTCTATCAGTCATTACTGACAGTCTTCAAAGAACCCTTTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCGCGAGGGGATGTGGTTGGCAGCATATCGGAGCCTATGTGAATCTTGCTTCATTTTACCTTTGTGGCATTCCTATCGCTGCTTCATTAGCGTTTTGGCTCAACTTTCGAGGAAAAAGCCTGTGGATGGGCATACTTTCTGGTGCAGCTCTGCAAACTATTCTACTTTCTGTGATAACATGCTGCACAAACTGGGAAAAACAAGCTGCAATGGCAAGGGAGAGGCTTCATGCTGATGAAAAATCATCAGTAGATAACGTACTATCGTAAAAAAATGCAGAAAATTCTCTTCGAAATACTCGAGTAATGTTAATTGGTTTATTGAGGCATCTTTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U598171" ref_strand="+" ref_description="SGN-U598171 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157338871|emb|CAO42222.1| (e_value=3e-11) unnamed; (*ATH) AT1G71140.1 (e_value=4e-21)  Symbol: None | MATE efflux family protein, similar to ripening regulated protein DDTFR18 (Lycopersicon esculentum) GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family | chr1:26828424-26830410 FORWARD | Aliases: F23N20... ; ">
      <seq>gctctcataaaaatacaatctttttcaaaaagggagttcttttttattaatttaagatcccttttacatagtatattcaaaaggggtggccttgttctccccttataaatcttgtaaagaaatcttgagttcttacaaggtatttacaaaaaggtgtcttttttgaaagttcaagaatctttttttaaatttttacaaggttttctcaaaaagttctttttttttttacaagttcaaagacttgtaaaataaaaaaaataaaaatatggagagtgtagaagaaggattgttattgaaagaaagggagttagttaaatggggagtaatttgggaggaagtgaaggaaattggttatttggctggtcctatgataattgtgacactttcacagtattttttgcaaacaatatcattgatgatggttggtcatttgggtgaacttgccctctcaagtacttctattgctatttctattgctggagtcactggtctcagcttacttgtagcgcgccttactactctatggatgtcgatatatataagttaagctcagttttacttgtatacatattttagctgggaatgggcactgcactagaaactctttgtggacaggctttcggagcgaaacaatatcaaagacttggtactcaaacatacacagccattttgtctctcctcaatgtttgcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0244P17.1" temp_strand="-" temp_description="C05HBa0244P17.1  CU914756.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0244P17 sequenced_by:sanger upload_account_name:uk">
        <position start="82473" stop="80021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82174" g_stop="81673" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81672" i_stop="80935" i_length="738">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80934" g_stop="80861" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="576" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80860" i_stop="80439" i_length="422">
            <donor d_prob="0.058" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80438" g_stop="80321" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="694" r_length="118" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0244P17.1" gen_strand="-" ref_id="SGN-U598171" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0244P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U598171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82174" e_stop="81673"/>
          <exon e_start="80934" e_stop="80861"/>
          <exon e_start="80438" e_stop="80321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCATAAAAATACAATCTTTTTCAAAAAGGGAGTTCTTTTTTATTAATTTAAGATCCCTTTTACATAGTATATTCAAAAGGGGTGGCCTTGTTCTCCCCTTATAAATCTTGTAAAGAAATCTTGAGTTCTTACAAGGTATTTACAAAAAGGTGTCTTTTTTGAAAGTTCAAGAATCTTTTTTTAAATTTTTACAAGGTTTTCTCAAAAAGTTCTTTTTTTTTTTACAAGTTCAAAGACTTGTAAAATAAAAAAAATAAAAATATGGAGAGTGTAGAAGAAGGATTGTTATTGAAAGAAAGGGAGTTAGTTAAATGGGGAGTAATTTGGGAGGAAGTGAAGGAAATTGGTTATTTGGCTGGTCCTATGATAATTGTGACACTTTCACAGTATTTTTTGCAAACAATATCATTGATGATGGTTGGTCATTTGGGTGAACTTGCCCTCTCAAGTACTTCTATTGCTATTTCTATTGCTGGAGTCACTGGTCTCAGCTTACTTGTGAGTACATATTTATTATCTTAATTTACATTACACACTTCCCTTTTTAGTTCATTTGAAAAGAATGTGAGTTTTTTGTTATTAGAAATAAACTTATCTCTTGTTAGAGTGGTTTAGAGTTCCACATCGATTAGAAAATGGACATACACCCTTAGCTTTTGAGGTTCATGTGTTGGAACTAGGTTCATTCCTATTTGGGCTCCCGGTCTACACCTCAGTTGGGCTTGGGTGTGAAGAAGTTGTTAGAGTAGTTGGATAGTTGATTGATGGTTTACTTATATACTTCTTCACGAGTTATCTTTTGGAGTTGTGTTAGGTACATGTGTCATATCTTTATCTTTACCACTCTTTATAGTTACACAAATGTGTAAGGTTTGTTTTAGATCACAAGTTTCAAAAGTCTTACCGATCAGACGGTGCAACATGTATTGGAATGTAGGGAGTGTTATTTCTTGGATTTGAATTTACGTCGTTAGTTTAGTTGCACCAATTATAGTAGGTTCTGACTCTATTTTTCAGTAACCATAGTAGGCTTTACATGAAGAGTTACATAGAGTTTAACATATATAGCGCAGAGTCCTTACTTTTAAGATGTTTCAGTATAGGCAGGTTAGTTGGTTATAGTAGGTTCACTCTATTTTTTTAGGTAATTATAGTAGGCTTAACATGAAGAGTTACATAAGGTTTTAACTTACATATGCTTACTATTGGTTCACCTTTAATTTACTTTTATAACAGGTAGCGCGCCTTACTACTCTATGGATGTCGATATATATAAGTTAAGCTCAGTTTTACTTGTATACATATTTTAGGTGAACTCTCTCTTCTATATGTTAACTTGTAATATGTTATGTTTACGATTTTCGGGGACTTGCTAATCTGTCCGTTTCAATTTGTTTGTTTTACTATCCTTTTTAGTTTGTTTTGAAAAGAAAGTCACTGTCCTTTTTAAAGGATCTGACACACTTAGCAGTATTTTTGAAGAGCCGAGCAACATAGCTTGTAAATATTAAGGGGAAACAGATAGAATAAAGAGAATGTGTTCTAATTTAGAGTTAAAGAGCAGATTTTTTTTGTCATTTTCAACTTATTAGAGGGCACAGTTATAAGTTATAAACTCTTGTGTGATTAGCAAAGCATTGCTTATAAATGAACAAATTGTCTAGTAACAAGTATTGATTTTTACCCTTTTTTTGTGCCTCTCCACCGACTAAAATCTGAATGTGTCGTGTAGCTGGGAATGGGCACTGCACTAGAAACTCTTTGTGGACAGGCTTTCGGAGCGAAACAATATCAAAGACTTGGTACTCAAACATACACAGCCATTTTGTCTCTCTTCATTGTTTGCATTC</genome_strand>
        <mrna_strand>GCTCTCATAAAAATACAATCTTTTTCAAAAAGGGAGTTCTTTTTTATTAATTTAAGATCCCTTTTACATAGTATATTCAAAAGGGGTGGCCTTGTTCTCCCCTTATAAATCTTGTAAAGAAATCTTGAGTTCTTACAAGGTATTTACAAAAAGGTGTCTTTTTTGAAAGTTCAAGAATCTTTTTTTAAATTTTTACAAGGTTTTCTCAAAAAGTTCTTTTTTTTTTTACAAGTTCAAAGACTTGTAAAATAAAAAAAATAAAAATATGGAGAGTGTAGAAGAAGGATTGTTATTGAAAGAAAGGGAGTTAGTTAAATGGGGAGTAATTTGGGAGGAAGTGAAGGAAATTGGTTATTTGGCTGGTCCTATGATAATTGTGACACTTTCACAGTATTTTTTGCAAACAATATCATTGATGATGGTTGGTCATTTGGGTGAACTTGCCCTCTCAAGTACTTCTATTGCTATTTCTATTGCTGGAGTCACTGGTCTCAGCTTACTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCGCGCCTTACTACTCTATGGATGTCGATATATATAAGTTAAGCTCAGTTTTACTTGTATACATATTTTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGAATGGGCACTGCACTAGAAACTCTTTGTGGACAGGCTTTCGGAGCGAAACAATATCAAAGACTTGGTACTCAAACATACACAGCCATTTTGTCTCTCCTCAATGTTTGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U583786" ref_strand="+" ref_description="SGN-U583786 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>ggtcaattatatttaggagtaggcgcgaacaccaaaattttgaagattttttttattttttatgatctgtttaaattcatggagaataaggatatggacattgaaaacataaaatcaaaccttcttgctttaaggcaattgtatggtctattgcgaaatgacagagatggtgtttcgaacttgaactctgatggtttggaccatgaagcgcgagtcatgttaaagaatctactcgatacaacaacgaatgatgtacttaaggctcattctgagatcatagcacatcaggcgcacgtgcacaacttacctcagcctcagcatctggttgacatggcgaaacaacgtcctcttgctttattagacatgccaaaatcttcagctgttattcaaagttgtggaaatgagccagttgtcgtggaggaatccaccttatcgaaagagaagcaggaatctatcgttccagttactcagacggctagcgtgcagcgtccaaaatttagctttagtgcaagtgaaactggaaataaaagaaagttttgcagagtctgtcagcgcccaaaatttgaaaagccgtttgttccttgtataaacactaaatcttctgaaatagaagcttcatattctacaaaggtcgtggcgttgcaagaacagcagaatagtctattcagcagtttttctcgggatattcaacaagaagcattgcaatcattaagcactgaaagtagaaagccgaaagaagtgctcgatctccatcacatatcaagtggtgcagatactgtggctttcatatcagacagaccagctaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0244P17.1" temp_strand="+" temp_description="C05HBa0244P17.1  CU914756.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0244P17 sequenced_by:sanger upload_account_name:uk">
        <position start="95733" stop="98763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96032" g_stop="96121" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96122" i_stop="96852" i_length="731">
            <donor d_prob="0.379" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96853" g_stop="96957" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="195" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96958" i_stop="97759" i_length="802">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97760" g_stop="97837" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="273" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97838" i_stop="97927" i_length="90">
            <donor d_prob="0.874" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97928" g_stop="98463" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="809" r_length="536" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0244P17.1" gen_strand="+" ref_id="SGN-U583786" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0244P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96032" e_stop="96121"/>
          <exon e_start="96853" e_stop="96957"/>
          <exon e_start="97760" e_stop="97837"/>
          <exon e_start="97928" e_stop="98463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAATTATATTTAGGAGTAGGCGCGAACACCAAAATTTTACAGATTTTTTTTTTTTGGTATGATCTGTTTAAATTCATGGAGAATAAGGTATTTATTTATTTATTGTTCCATTTTTTTGTCAACAATTTGAACAGAAAACAAATTGGAATTTGTTCAAATGTATGTATTTGAAAAATTAATTTGCCTAAATTGTGTGTTTTGGGTGATTTAAAATCATGAAATTTTAGGGATTTTTGAGTTTGTAATATGATTTTTTCAGTCATTGAGTATCACAAAGTTATGTTATCACTTGATAGTCTCAACATTTGGCTATTTGTGTGGTCGTAGATTTTGAAGTTGAAACTTGAACCTGAGTTTTTAAAGTTGCAATTTTGTAATTTTGAAGTTGTTTTGGGAATTTTTTATTGAAGTTTTGTAAGTGGAAGTATCAAAACTCACAAAAGTTGTGATTTTTGGGGGGAAATATTGAAGTTTTGTGGGTTGAAGTCCAAAAATATTTGGCAAAGTTTGTGATTTTTTGAATTTGAAGTTATTTTGAGAAAACGATTTGATGTTTTGTGAGGGAAAGTCGAGAAAATCTAAAAGTTTGTTTGAGTTTGTTTTGGGGAATTTGAAGATCAAATTTCATGGTTACACAGATATTTAAAGATAAATTTTCAAAATCTATAATCAAACGCTAGCTTGAAGTTGGTGAATAACTCAATGTATTGTGCAGAAAAATGTCTCGTGAAGTTATTTTCAATCTTTTTAGGTAGTTGTAGCAGTGTAGTTGTATAATTTCACACTGATTTTACTCACTTTTCTTGTTTGTTAACCAGGATATGGACCTTGAGAACATAAAATCAAACCTTCTTGCTTTAAGGCAATTGTATGGTCTATTGCGAAATGACAGAGATGGTGTTTCGAACTTGAACTCTGATGGTGTAAGTTTCTTTTTTGTGCTTATTTGTATGATCATACTCGTAATAGGCTTAAGTCGACAAGGGTCTACTGGACCTATGAGGTAGAGGTAAAGTCTGCATACATTCTCTAGACGCACTTTGAGGGACTATACTGACTATGTTATTGTTGTACTCGTGATAGGCTTTAGTTTGTGTGAGGGGTAATGGTGGAAGTTACGAGTCAAATGGACGTTCAATAATTTAAATTCCAACCATAGCTTTGTTTTTTTGTTTGCTTTGTGGATTTCAATTTCTTGGTTTGGGGGGAGAAGGGGTTGAGATGAAAAAAGTTTGATGTTATGAACTTCGTGTGGCCTTAAGCTTTTATTGCTGTTAAAAAGTAAGTACTTTTACCTCGTCTTTGGCTTCACTAATGTCGTGGAGCAACAGTAAAAGTAAAATTGTCTCTGTGTGACCTAAATATCATATGTTCGAGCACTGGAATCAGTTATTGATGCTTGTGTTAGGGTTTGGTTGCGTACATCATACTCTTGAGTTGCGGCCTTTCCCCGTAGCCTGCATGAACGCAGGCTGTTTTGTGCACCGGGCTGTTCTTTTTTAGAAGAAGCTTAACAGGGTGGTTGGGATTATATTTAATTGGTAGACTGGCCAAATTTTCGTTTATAAATTTAGGTGGTGTTGTGTTCTATGTCTGGTATCTGGCCTGTTTGATGGTCGGGATAGCAATCTTGGAGTAATATATCTCCTTTATTTCATCTTATATACGCCTGTCTAGACTCTAAACGCCTATTTCCGACAGTATTTGTTTTTTTTCTTCAAACAGTTGGACCATGAAGCGCGAGTCATGTTAAAGAATCTACTCGATACAACAACGAATGATCTACTTAAGGCTCATTCTGAGGTACCTGTCTGGTTCTCTGCTTACTGAGGGGAACCTTTATTGTTAGATCTTCGTTATTCAGACTTATCGTGTCATTCCTATTTCCCACAGATCATAGCACATCAGGCGCACGTGCACAACTTACCTCAGCCTCAGCATCTGGTTGACATGGTGAAGCAACGTCCTCTTGCTTTATTAGACATGCCAAAATCTTCAGCTGTTATTCAAAGTTGTGGAAATGAGCCAGTTGTCGTGGAGGAATCCACCTTATCGAAAGAGAAGCAGGAATCTATCGTTCCAGTTACTCAGACGGCTAGCGTGCAGCGTCCAAAATTTAGCTTTAGTGCAAGTGAAACTGGAAATAAAAGAAAGTTTTGCAGAATCTGTCAGCGCCCAAAATTTGAAAAGGCGTTTGTTCCTTGTATAAACACTAAATCTTCTGAAATAGAAGCTTCACATTCTACAAAGGTCGTGGCGTTGCAAGAACAGCAGAATAGTCTATTCGGCAGTTTTTCTCGGGATATTCAACAAGAAGCATTGCAATCATTAAGCACTGAAAGTAGAAAGCCGAAAGAAGTGCTCGATCTCCATCGCATATCAAGTGGTGCAGAAACTGTGGCTTCCATATCAGACAGACCAGCTAATGA</genome_strand>
        <mrna_strand>GGTCAATTATATTTAGGAGTAGGCGCGAACACCAAAATTTTGAAGATTTTTTTTATTTTTTATGATCTGTTTAAATTCATGGAGAATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGGACATTGAAAACATAAAATCAAACCTTCTTGCTTTAAGGCAATTGTATGGTCTATTGCGAAATGACAGAGATGGTGTTTCGAACTTGAACTCTGATGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACCATGAAGCGCGAGTCATGTTAAAGAATCTACTCGATACAACAACGAATGATGTACTTAAGGCTCATTCTGAG..........................................................................................ATCATAGCACATCAGGCGCACGTGCACAACTTACCTCAGCCTCAGCATCTGGTTGACATGGCGAAACAACGTCCTCTTGCTTTATTAGACATGCCAAAATCTTCAGCTGTTATTCAAAGTTGTGGAAATGAGCCAGTTGTCGTGGAGGAATCCACCTTATCGAAAGAGAAGCAGGAATCTATCGTTCCAGTTACTCAGACGGCTAGCGTGCAGCGTCCAAAATTTAGCTTTAGTGCAAGTGAAACTGGAAATAAAAGAAAGTTTTGCAGAGTCTGTCAGCGCCCAAAATTTGAAAAGCCGTTTGTTCCTTGTATAAACACTAAATCTTCTGAAATAGAAGCTTCATATTCTACAAAGGTCGTGGCGTTGCAAGAACAGCAGAATAGTCTATTCAGCAGTTTTTCTCGGGATATTCAACAAGAAGCATTGCAATCATTAAGCACTGAAAGTAGAAAGCCGAAAGAAGTGCTCGATCTCCATCACATATCAAGTGGTGCAGATACTGTGGCTTTCATATCAGACAGACCAGCTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U603846" ref_strand="+" ref_description="SGN-U603846 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cgcaaatcatatagattttatagaatactatgttaaaacaatccgtaatcttattcatataacaattctgaatatgcttcttgaaatgcgtaataagcagtgatgttagtcgatagcactttgaaatttccagcaattctaaagtgaggtcaagaactttctcttttttcataagtaaacaaagtggcaatttcagatgccttacttcatctcggaaaaagcttttgatggtgtttcttatgtgcggatcccagcatgacaggtgttttattcatacctctgtgatgccttagtagttgccaccaacgaaatttgttaatcaccttcttattgctatgttgttctttgtctgctggtctactgctgctatgtttcgacttctttgaatgctggatatgttgcataagcccccgagcaagggtatgaaattggtcccccttcgtctttgttccagctttcttgtcgattgctgacttcccaaacttttccaaagcctttcctccatatgtttcatccttgcttgatgaatagtgaccggggaaccttttccctctctgcctcaacaaagatgtctttttctccttagctttatcatccttaccatgatggtgatggtggtgatgaatgatggtgaaaaactattgctagcttgtctttcaatttcttccaccttccgttatgtttctttgattttttcgagttagcagacttgtaggcacgtgcaggacttgacctccttgatgaagatctgctgagtagtacgagagttcttcagatggtcagaccctgaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0244P17.1" temp_strand="-" temp_description="C05HBa0244P17.1  CU914756.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0244P17 sequenced_by:sanger upload_account_name:uk">
        <position start="100840" stop="99452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100546" g_stop="99752" g_length="795"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="793" r_length="793" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0244P17.1" gen_strand="-" ref_id="SGN-U603846" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0244P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100546" e_stop="99752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCATCATATAGATTTTATAGAATACTATGTTAAAACAATCCGTAATCTTATTCATATAACAATTCTGAATATGCTCCTTGAAATGTGTAATAAGCAGTGATATTAGTCGTTGGCACTTTGAAATTTCCAGCAATTCTAAAGTGAGGTCAAGAACTTTCACTTTTTTCATAAGTAAACAAAGTGGCAATTTCAGATGCCTTACTTCATCTCGGAAAAAGCTTTTGATGGTGTTTCTTATGTGCGGATCCTAGCATGACAGGTGTTTTATTCATACCTCTGTGATGCCTTAGTAGTTGCCACCAACGAAATTTGTTAATCACCTTCTTATTGCTATGTTGTTCTTTGTCTGCTGGTCTACTGCTGCTATGTTTCGACTTCTTTGAATGCTGGATATGTTGCATAAGCCCCCGAGCAAGGGTATGAAATTGGTCCCCCTTCGTCTTTGTTCCAGCTTGCTTGTCGATTGCTGACTTCCCAAACTTTTCCAAAGCCTTTCCTCCATATGTTTCATCCTTGCTTGATGAATAGTGACCGGGGAACCTTTTCCCTCTCTGCCTCAACAAAGATGTCTGTTTCTCCTTAGCTTTATCATCCTTACCATGATGGTGATGGTGGTGATG-ATGATGGTGAAAAACTATTGCTAGCTTGTCTTTCAATTTCTTCCACCTTCCATTATGTTTCTTTGATTTTTTTGAGTTAGCAGACTTGTAGGCACGTGCAGTACTTGACCTCCTTGATGAAGAATCTGCTGAGTAGTACGAGAGTTCTTCAAGATGGTCAGACCCTGAAGG</genome_strand>
        <mrna_strand>CGC-AAATCATATAGATTTTATAGAATACTATGTTAAAACAATCCGTAATCTTATTCATATAACAATTCTGAATATGCTTCTTGAAATGCGTAATAAGCAGTGATGTTAGTCGATAGCACTTTGAAATTTCCAGCAATTCTAAAGTGAGGTCAAGAACTTTCTCTTTTTTCATAAGTAAACAAAGTGGCAATTTCAGATGCCTTACTTCATCTCGGAAAAAGCTTTTGATGGTGTTTCTTATGTGCGGATCCCAGCATGACAGGTGTTTTATTCATACCTCTGTGATGCCTTAGTAGTTGCCACCAACGAAATTTGTTAATCACCTTCTTATTGCTATGTTGTTCTTTGTCTGCTGGTCTACTGCTGCTATGTTTCGACTTCTTTGAATGCTGGATATGTTGCATAAGCCCCCGAGCAAGGGTATGAAATTGGTCCCCCTTCGTCTTTGTTCCAGCTTTCTTGTCGATTGCTGACTTCCCAAACTTTTCCAAAGCCTTTCCTCCATATGTTTCATCCTTGCTTGATGAATAGTGACCGGGGAACCTTTTCCCTCTCTGCCTCAACAAAGATGTCTTTTTCTCCTTAGCTTTATCATCCTTACCATGATGGTGATGGTGGTGATGAATGATGGTGAAAAACTATTGCTAGCTTGTCTTTCAATTTCTTCCACCTTCCGTTATGTTTCTTTGATTTTTTCGAGTTAGCAGACTTGTAGGCACGTGCAGGACTTGACCTCCTTGATGAAG-ATCTGCTGAGTAGTACGAGAGTTCTTC-AGATGGTCAGACCCTGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U576544" ref_strand="+" ref_description="SGN-U576544 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|217073021|gb|ACJ84870.1| (e_value=5e-83) unknown; (*ATH) AT1G66740.1 (e_value=1e-78)  Symbol: None | ASF1-like anti-silencing protein, putative, similar to SP:P32447 Anti-silencing protein 1 {Saccharomyces cerevisiae}; contains Pfam profile PF04729: Anti-silencing protein, ASF1-like; supporting cDNA gi:27530935:dbj:AB078339.1: | chr1... ; (*SWP) sp|Q9C9M6|ASF1A_ARATH (e_value=1e-77) Probable histone chaperone ASF1A OS=Arabidopsis thaliana GN=ASF1A; ">
      <seq>ttacggccgggggttcgattagggtttcggagtcggagaattttctagagagatgagcgccgtcaacattacgaacgtcgccgtactggataatccggcaccgttcctcagtccttttcagtttgagatctcttacgagtgcctcgatgctcttaaagatgatttagagtggaagctaacttatgtgggatctgctgaggatgatacttatgaccagcaactagaaagtgtttttgttggacctgtaaatgttgggaaatatcgttttgtgcttcaggctgatccccctgaaccatccaaaattcgcgaagaagatataattggtgtcacagtattgctattaacatgctcttatgtgggtcaagaatttattcgagtaggatactatgtgaacaatgattatgatgatgaacagctaaaagaagaaccgcctcagaaggttttggttgataggatccagaggaatattttggttgacaaacctcgagtcacaaaattccccattaatttccatccagaaaacaatgaagatggagaacaagctcctcctgacaatgcaacagaagaaaaggcgcttcgagaagaacccgtttcttcacccaagcaatgtaatgagcagtgtcctcaaacttgagaaacaacaagcaagacaaactgctttggctgtcaataagttttccctntcanagtttgatatttcnatgatgtatngtgccntcntgttataatctataaatctttanngntgatggnatatttttaatttctgcctcnncatgtacacacntcnatngnngtatctgctatggtcatatctagccna</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0244P17.1" temp_strand="-" temp_description="C05HBa0244P17.1  CU914756.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0244P17 sequenced_by:sanger upload_account_name:uk">
        <position start="104120" stop="100852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103827" g_stop="103667" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="161" r_length="160" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103666" i_stop="101882" i_length="1785">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101881" g_stop="101766" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="277" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101765" i_stop="101697" i_length="69">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101696" g_stop="101152" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="823" r_length="546" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0244P17.1" gen_strand="-" ref_id="SGN-U576544" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0244P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U576544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103827" e_stop="103667"/>
          <exon e_start="101881" e_stop="101766"/>
          <exon e_start="101696" e_stop="101152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTTGGCGGGTTCGATTAGGGTTTCGGAGTCGGAGAATTTTCTAGAGAGATGAGCGCCGTCAACATTACGAACGTCGCCGTACTGGATAATCCGGCACCGTTCCTCAGTCCTTTTCAGTTTGAGATCTCTTACGAGTGCCTCGATGCTCTTAAAGATGGTAAATTTTTCATTCTTCTGTCGTTTTATTTCCTTTTTGATGTGAAAATTGTTTGTTTTTGGGGAAAAATCAAGCAAATAGTTTGCAGTAGTAGCGGTGATATAGCTGTAAATGCGTTTTTGTTGAGTTTTCGAAGTCGGAATTCAGAGCTTAGGTTTCTTAATTTTGTACTCTAGTTAGGTGGGAAAGTTATTCAATTTGATTATTTCTCTGTTGCCAAGTGATTTAAAATTGTTATTTGAGAAGAGGAAATGAGATTATGAAGATTCACGAAATGATGTTATTAATTTATGTAATTGTTTATTATACAGTTTAACCTTTCCATATCTATATAGACATGTTAAATACTTGTGATATAGTAGAAACAATTATCGTGAGAATCTATCGGAAACAATTTCTATGAGAGTTAGGTATAAAGTCTTAAGACACTTTATCCTTCTCAGATCCCACTTTGTAGTTATGCAAGCATGCACCGGTAAGGTGACTAGAAAAAATTGTAACAATTGTCATACAAAGTGAAAACATGGTGTACAGTAAAATGCTTAGCTGAAAACATACAAATAGGTATGCAAATGAAATACGAGGCCTCAATCAAATGGGACAGTGTTTAAAGTCGAGTTCTTTTTCAACTGATGAGTAGCCTCTGGTCCTTTTATGTTCTTTGGTGCACCTATAGAATTCCAAGTTGTATAGGAAATTGAGTCGGGGTGCTGCTACATTGTAGTTGTTCTCATAACACATCAGTTTAGCTGAATTTCACTTGCTTTATTGAGAAATCCTTTTGTTTCCAAGTCAACTACCAAAAATATACTGTTAGTAAGGGCTAGGCAGCTAGCCATGATTCTGGGAAGGGTTCATTTCTGTTACCTGTTGCTAATATTTCCCTATAGTTATGTGAATAAGACTAAAAGACTAGTCCACTTCAATATAAATTGACCACTTCCACAACTTAAACTATATCAAAACTCTTAATATCAGAGAGTGAAATTGTAGATCTTACTTTAGCTTTTGTGACACTATCTGCAGCAACACTCTCTCTCTACCTGAATCATTAGTGCATGCGTTGAGTAGTCTACTTTATCATGAAAACCCCTCTCAAAAGAAGTCATTTCTTCTTCCAACTTTTCGATCTAAATTTTCCTCTAATACTTTCCCCTATTATCTAATGCTCTGATGTGGCTCACTTATCTTCTTTTGGTGCACCTATAAAGTTCCTTATGGTATAGAAGGATAGGTGGATTTTGCATATTCTTTACCTTTTGTGGTATATCCTTTGTATGTGACCAGCTCAACCATGTTTATGAATGAAATACTTCTACTTTACAAGAAAATAAACAAATCATATAAAGCTCTGATTAGTGATTACCCCATTGTGTCAAGTGTCAACTATACACAATTTTTCCAGCATCTTGTGATTTGTCTCAACTCTCAATGGTTATTGGTTAGGACTTCTAGGAAGGATCTAAAATTAAGCAATCCCCAAAGAGAACCCCGTTGGGATCGATAATTTTCTTGAACTACATTTCTTTTTGTTATGGTCACTATTCATACAGTTTTCTTTTCCTCGTTCTTTTTTACTTGACCTAGTTGTCATAGACTATTCATGACTTCATGTAACTTAAGTTGTTGCTGAAACTTTCTGTCTTTCATTCATGGTTCATCTTGTCTGAACGATTAAAATTTGTAAAGGTTAAATTATTTGAGTATGTGAATTTTGCAAATAGGATTTCCCTTCAGAAATCAGAAGTATCAAGCTCTACCTTCTGACTATTTCATTTGTTTCAGATTTAGAGTGGAAGCTAACTTATGTGGGATCTGCTGAGGATGATACTTATGACCAGCAACTAGAAAGTGTTTTTGTTGGACCTGTAAATGTTGGGAAATATCGTTTTGTGCTTCAGGTAATGAATACTCTTTTAACTTTTCAATTGTGCCAAAGATTAGAGACTTATGCTGAAACCAATCTGCAGGCTGATCCCCCTGAACCATCCAAAATTCGCGAAGAAGATATAATTGGTGTCACAGTATTGCTATTAACATGCTCTTATGTGGGTCAAGAATTTATTCGAGTAGGATACTATGTGAACAATGATTATGATGATGAACAGCTAAAAGAAGAACCGCCTCAGAAGGTTTTGGTTGATAGGATCCAGAGGAATATTTTGGTTGACAAACCTCGAGTCACAAAATTCCCCATTAATTTCCATCCAGAAAACAATGAAGATGGAGAACAAGCTCCTCCTGACAATGCAACAGAAGAAAAGGCGCTTCGAGAAGAACCCGTTTCTTCACCCAAGCAATGTAATGAGCAGTGTCCTCAAACTTGAGAAACAACAAGCAAGACAAACTGCTTTGGCTGTCAAAAAGTTTTCCCT-TCAGAGTTTGATATTTCAATGATGTATTGTGCCATCTTGTTATAATCTATAAATCTTTAGTGTTGATGGTATATTTTTAATTTCTGCCTCAACATGTACACACATCAATTGTTGTATCTGCTATGGTCATATCTAGCCGA</genome_strand>
        <mrna_strand>TACGGCCGG-GGGTTCGATTAGGGTTTCGGAGTCGGAGAATTTTCTAGAGAGATGAGCGCCGTCAACATTACGAACGTCGCCGTACTGGATAATCCGGCACCGTTCCTCAGTCCTTTTCAGTTTGAGATCTCTTACGAGTGCCTCGATGCTCTTAAAGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAGAGTGGAAGCTAACTTATGTGGGATCTGCTGAGGATGATACTTATGACCAGCAACTAGAAAGTGTTTTTGTTGGACCTGTAAATGTTGGGAAATATCGTTTTGTGCTTCAG.....................................................................GCTGATCCCCCTGAACCATCCAAAATTCGCGAAGAAGATATAATTGGTGTCACAGTATTGCTATTAACATGCTCTTATGTGGGTCAAGAATTTATTCGAGTAGGATACTATGTGAACAATGATTATGATGATGAACAGCTAAAAGAAGAACCGCCTCAGAAGGTTTTGGTTGATAGGATCCAGAGGAATATTTTGGTTGACAAACCTCGAGTCACAAAATTCCCCATTAATTTCCATCCAGAAAACAATGAAGATGGAGAACAAGCTCCTCCTGACAATGCAACAGAAGAAAAGGCGCTTCGAGAAGAACCCGTTTCTTCACCCAAGCAATGTAATGAGCAGTGTCCTCAAACTTGAGAAACAACAAGCAAGACAAACTGCTTTGGCTGTCAATAAGTTTTCCCTNTCANAGTTTGATATTTCNATGATGTATNGTGCCNTCNTGTTATAATCTATAAATCTTTANNGNTGATGGNATATTTTTAATTTCTGCCTCNNCATGTACACACNTCNATNGNNGTATCTGCTATGGTCATATCTAGCCNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U585664" ref_strand="+" ref_description="SGN-U585664 Tomato 200607#2 [85 ESTs aligned] (*GB) gi|3676296|gb|AAD03392.1| (e_value=0) mitochondrial ATPase beta subunit [Nicotiana sylvestris]; (*ATH) AT5G08690.1 (e_value=0)  Symbol: None | ATP synthase beta chain 2, mitochondrial, identical to SP:P83484 ATP synthase beta chain 2, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; strong similarity to SP:P17614 ATP synthase beta chain, mitochondrial precursor ... ; (*SWP) sp|P17614|ATPBM_NICPL (e_value=0) ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB; ">
      <seq>aaagtgtgtctactaatttcactaaccctagcattctccctttctctctctacacctcacctttctctctctatagaccaaaccctatcaacgccatggcgtcacggaggcttatggcctctctcctccgatcaaccgcccagcgtggcggcgctatttccagatctccattggcaaattccatccctaaagctacttcacgcgcctccccagcgggattcctcttaaatcgtgctgttaagtacgctacctcagctgctgctccggctgataagtcagcgacacctcctaagtcctctggtaatgagcctaccggtaagatcaccgatgagttcactggcgctggtgcggtcggtaaagtgtgccaggttattggtgctgttgtggatgtgagattcgatgaaggtttgcctccgatccttactgctcttgaggttctggataaccagatccgtcttgtgcttgaggttgctcagcatttgggtgagaatatggttaggactattgctatggatggtactgaaggtcttgtgcgtggtcaacgcgtccttaacactgggtctcctatcactgtccctgtcggtaggtccacccttggccgtatcatgaatgttattggagagcctattgatgagagaggcgacattacaaccgatcactttttgccaattcatcgtgaagctcctgcctttgttgagcaggcaactgaacaacaaattcttgttactggtatcaaggttgttgatcttcttgccccttaccaaaggggaggaaagattgggctttttggtggtgctggtgtgggaaagaccgtgctcattatggaactgattaacaacgttgcaaaggcacatggtggtttctccgtctttgctggtgttggtgaacgtactcgtgagggcaatgatttgtacagggaaatgattgaaagtggtgttattaagctaggtgaaaagcaaagtgaaagcaagtgcgctcttgtatatggtcaaatgaatgagccccctggtgctcgtgcccgtgttggccttacaggattgactgtggctgagcacttcagagatgctgaggggcaggatgtgcttctctttattgacaacattttcagatttacccaggctaactcagaggtctctgctttgcttggtcgtatcccatctgctgtcggttatcaaccaactttggctacagatcttggaggtcttcaagagcgtatcactacaaccaagaaaggttctattacatctgtccaggctatctatgtgcctgctgatgacttgacagatcctgcccctgcaactacctttgctcacttggatgccacgactgtgttgtcccgtcaaatttctgagcttggtatttatcctgctgttgatccacttgattctacatctcgtatgctctcacctcacattttgggagaagatcattacaatactgctcgtggggtacagaaagttcttcaaaactacaagaatcttcaagatattattgccattttgggtatggatgagctgagtgaagatgataagatgactgttgcccgtgcacgtaagatccagagattcctcagtcagcctttccatgttgctgaagttttcacgggtgctcctggaaaatatgttgacttgaaggagagcattaacagtttccagggagtcctggacgggaaatacgatgatctttcagaacaatcattctatatggtcggtggaatcgaggaggtcattgccaaggcagagaagattgccaaggaatctgcagcttagattattaactccagcaactttctttcattatcttcatcgataactacagaaataatttaagtttctgtgacactggatttttttttcctgggaggactaaggggtccaagattttctggtttttgtttttatattcaacccggaattgtgatagggaagacatggagctaaggcctacttgccaaacacccacccttgacgctctgttatgtcgcataataaagggggtaaaacggcaaacttgtatattttactttgaattcatcttgagaatgttggttgcccaaattatgaggggttgtcttttcattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0244P17.1" temp_strand="+" temp_description="C05HBa0244P17.1  CU914756.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0244P17 sequenced_by:sanger upload_account_name:uk">
        <position start="121515" stop="126127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121815" g_stop="122386" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122387" i_stop="123374" i_length="988">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123375" g_stop="123450" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="648" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123451" i_stop="123536" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123537" g_stop="123625" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="737" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123626" i_stop="123760" i_length="135">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123761" g_stop="123878" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="855" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123879" i_stop="123963" i_length="85">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123964" g_stop="124067" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="856" r_stop="959" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124068" i_stop="124163" i_length="96">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124164" g_stop="124322" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="960" r_stop="1118" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="124323" i_stop="124404" i_length="82">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="124405" g_stop="124629" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1119" r_stop="1343" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="124630" i_stop="124725" i_length="96">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="124726" g_stop="125037" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1344" r_stop="1655" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="125038" i_stop="125398" i_length="361">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="125399" g_stop="125815" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1656" r_stop="2072" r_length="417" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2081" polyA_stop="2099"/>
      <MATCH_line gen_id="C05HBa0244P17.1" gen_strand="+" ref_id="SGN-U585664" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2072</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0244P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U585664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121815" e_stop="122386"/>
          <exon e_start="123375" e_stop="123450"/>
          <exon e_start="123537" e_stop="123625"/>
          <exon e_start="123761" e_stop="123878"/>
          <exon e_start="123964" e_stop="124067"/>
          <exon e_start="124164" e_stop="124322"/>
          <exon e_start="124405" e_stop="124629"/>
          <exon e_start="124726" e_stop="125037"/>
          <exon e_start="125399" e_stop="125815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGTGTCTACTAATTTCACTAACCCTAGCATTCTCCCTTTCTCTCTCTACACCTCACCTTTCTCTCTCTATAGACCAAACCCTATCAACGCCATGGCGTCACGGAGGCTTATGGCCTCTCTCCTCCGATCAACCGCCCAGCGTGGCGGCGCTATTTCCAGATCTCCATTGGCAAATTCCATCCCTAAAGCTACTTCACGCGCCTCCCCAGCGGGATTCCTCTTAAATCGTGCTGTTAAGTACGCTACCTCAGCTGCTGCTCCGGCTGATAAGTCAGCGACACCTCCTAAGTCCTCTGGTAATGAGCCTACCGGTAAGATCACCGATGAGTTCACTGGCGCTGGTGCGGTCGGTAAAGTGTGCCAGGTTATTGGTGCTGTTGTGGATGTGAGATTCGATGAAGGTTTGCCTCCGATCCTTACTGCTCTTGAGGTTCTGGATAACCAGATCCGTCTTGTGCTTGAGGTTGCTCAGCATTTGGGTGAGAATATGGTTAGGACTATTGCTATGGATGGTACTGAAGGTCTTGTGCGTGGTCAACGCGTCCTTAACACTGGGTCTCCTATCACTGTGAGTAATCTGAAATTGTTTATTTTCAGTCTATTATGTTCCAAAGATCTTTACTTTACTGGTTCAGGACTTGCATTCTTATCTTTGTATAAGATTGTTGGAATTCAGGAGTTTAGAAATGTGAGAGTAATCTATTTAATGTGGTTTCTAGGAAACGATTTTATTTGATAGTTCTTCAAGATCTGTGGTTTTATTATGCTGCTTTAATGGAATGTTCTGTTGATCTAGATATTGGGGTTGGTTAGTCAATCATAGCGCCATTGTTTTCATATAAATTGCAGGTTGTTGAAGCTGTAAATCTGTAACTACATCAGGGTTAATTGCATGTAGGCTTGCTTATGATTATCTAATAGTAAATAACATTTCTTTGCTCCTAAATGGTAGTACATATATTTGATTGTGGTAGTTTGGATCCTAATGTGTGGGAAACTATTGGTTTTCCTAGTAAAAGCTGTATTTTTCCTTGCAAGGCACCTTTGGTGCTTTAAATGGGCCTCTATTGGTTTGTGGATTTGCTCATCTTTATTCACAATCAAATGAGATACTGTAGAGTGCTTCATTGATACCCGAATTTACCACTGTATTATTGGAAGAAATTCATGTTGTTCTGTGAGATGTGAAAAATTTACCTACTCCACTTATTTTCCCCCATCTGAATGATGAAAAACTCCTGCTCTGAAACTCGATTTTTCCTCCTAATATTGTTGTTCTCGAAAATTGTTTTGAGTTGTCCCCCCTCTTCCTCTTGGGAACACAGTCATGTGTGGGTTCAGTCTTAAATTTTTTGTTGTCTTTTAATTTCTCCCTTTAATGAAAAATAATTGAGTAGTAGCTGTATAGCTGATCCAGCTAATTTGGGTTGAGGTGCAGTGGTTGATGTTTTGTTTCAGTTGATATCCTGCTTTCAGTGAGAATATGGGTTATAGATCTATTTGCCATTCACTTACTACTTTTTTGCGCTGAACTGATGGTTTAATTGTGATGGCAGGTCCCTGTCGGTAGGTCCACCCTTGGCCGTATCATGAATGTTATTGGAGAGCCTATTGATGAGAGAGGCGACATTAGTAAGTCCTAAATACTTTATCCCTTGTTTTATTTGTTCCGTGAAGAGTTCTGAAAGTTATATCTCTATCTCTGAATATCGCTGCAGCAACCGATCACTTTTTGCCAATTCATCGTGAAGCTCCTGCCTTTGTTGAGCAGGCAACTGAACAACAAATTCTTGTTACTGGTATCAAGGTATGCTAATCAAACAATTTTATTCAATGTTCTCGTATGTATCTCTCTTGCTGAGCATATATTGGTTCCTGAAGTGTAATTTCTACTCAACGTTATGACAATGCCAATCTCATTGTTTGCTTAACTTCTGACCAGGTTGTTGATCTTCTTGCCCCTTACCAAAGGGGAGGAAAGATTGGGCTTTTTGGTGGTGCTGGTGTGGGAAAGACCGTGCTCATTATGGAACTGATTAACAACGTTGCAAAGGCACATGGTTAGTGCTGCTTATGGGTTGTCTTCTTATTATGTTATATGTAAGTCAGTGTGAAACTTATCTGACTGAGGCTCAACTCTTTCAGGTGGTTTCTCCGTCTTTGCTGGTGTTGGTGAACGTACTCGTGAGGGCAATGATTTGTACAGGGAAATGATTGAAAGTGGTGTTATTAAGCTAGGTGAAAAGCAAGTATGTGTTCTATTCAGACAGAATTAATTGTTTTACCCCTTCATCAAAATTTTTGTCCCATGTTGTTGACATTTTATCTTTTATTGGATTGATTAGAGTGAAAGCAAGTGCGCTCTTGTATATGGTCAAATGAATGAGCCCCCTGGTGCTCGTGCCCGTGTTGGCCTTACAGGATTGACTGTGGCTGAGCACTTCAGAGATGCTGAGGGGCAGGATGTGCTTCTCTTTATTGACAACATTTTCAGATTTACCCAGGTTGGCTTGCCTATGACTGCTAAAGTTCTCTTATTTTATACAACTCTACTGTTGCTTACTAGTTGCTTTTGTATCAAAACAGGCTAACTCAGAGGTCTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTCGGTTATCAACCAACTTTGGCTACAGATCTTGGAGGTCTTCAAGAGCGTATCACTACAACCAAGAAAGGTTCTATTACATCTGTCCAGGCTATCTATGTGCCTGCTGATGACTTGACAGATCCTGCCCCTGCAACTACCTTTGCTCACTTGGATGCCACGACTGTGTTGTCCCGTCAAGTATGATGCCATTTCTTAACTTGAACTATAACTTAATTTTTCGTTCCTTGTAGAGTGCAGTTACAATTTTCTAACTTCGCGTATTTTGGATACCAGATTTCTGAGCTTGGTATTTATCCTGCTGTTGATCCACTTGATTCTACATCTCGTATGCTCTCACCTCACATTTTGGGAGAAGATCATTACAATACTGCTCGTGGGGTACAGAAAGTTCTTCAAAACTACAAGAATCTTCAAGATATTATTGCCATTTTGGGTATGGATGAGCTGAGTGAAGATGATAAGATGACTGTTGCCCGTGCACGTAAGATCCAGAGATTCCTCAGTCAGCCTTTCCATGTTGCTGAAGTTTTCACGGGTGCTCCTGGAAAATATGTTGACTTGAAGGAGAGCATTAACAGTTTCCAGGTAACAAATCTCAATTTAGAATCTTGTTGTAAGATACTGTGATTGTTTAGAAGTTAGATCTCATCAAAAAGAATTTTGTTCACTTAGCTCTTAACGCCTCCTATACTTGTTTAGTTTACCACGGAAACAATTTTTCTTTTTACTACACCCCTTTTCTTACATGTTATTCCTGGTATTGTATAGTCCTCACCTTTCAGCAAGTTGAAGTGATTCTTTATGAATTAAATTTTACCATATGATTTTAAGTCTTTCCTCCCTGTTATTTGGTGAAGTTTATCTGAGATGATAACTTCCTGCTATGTTTGTGCATATTCAGAAATCAATTTGCTGATTATTTCTTTCTTGTAATTGAATTTTGCAGGGAGTCCTGGACGGGAAATACGATGATCTTTCAGAACAATCATTCTATATGGTCGGTGGAATCGAGGAGGTCATTGCCAAGGCAGAGAAGATTGCCAAGGAATCTGCAGCTTAGATTATTAACTCCAGCAACTTTCTTTCATTATCTTCATCGATAACTACAGAAATAATTTAAGTTTCTGTGACACTGGATTTTTTTTTCCTGGGAGGACTAAGGGGTCCAAGATTTTCTGGTTTTTGTTTTTATATTCAACCCGGAATTGTGATAGGGAAGACATGGAGCTAAGGCCTACTTGCCAAACACCCACCCTTGACGCTCTGTTATGTCGCATAATAAAGGGGGTAAAACGGCAAACTTGTATATTTTACTTTGAATTCATCTTGAGAATGTTGGTTGCCCAAATTATGAGGGATCGTC</genome_strand>
        <mrna_strand>AAAGTGTGTCTACTAATTTCACTAACCCTAGCATTCTCCCTTTCTCTCTCTACACCTCACCTTTCTCTCTCTATAGACCAAACCCTATCAACGCCATGGCGTCACGGAGGCTTATGGCCTCTCTCCTCCGATCAACCGCCCAGCGTGGCGGCGCTATTTCCAGATCTCCATTGGCAAATTCCATCCCTAAAGCTACTTCACGCGCCTCCCCAGCGGGATTCCTCTTAAATCGTGCTGTTAAGTACGCTACCTCAGCTGCTGCTCCGGCTGATAAGTCAGCGACACCTCCTAAGTCCTCTGGTAATGAGCCTACCGGTAAGATCACCGATGAGTTCACTGGCGCTGGTGCGGTCGGTAAAGTGTGCCAGGTTATTGGTGCTGTTGTGGATGTGAGATTCGATGAAGGTTTGCCTCCGATCCTTACTGCTCTTGAGGTTCTGGATAACCAGATCCGTCTTGTGCTTGAGGTTGCTCAGCATTTGGGTGAGAATATGGTTAGGACTATTGCTATGGATGGTACTGAAGGTCTTGTGCGTGGTCAACGCGTCCTTAACACTGGGTCTCCTATCACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTGTCGGTAGGTCCACCCTTGGCCGTATCATGAATGTTATTGGAGAGCCTATTGATGAGAGAGGCGACATTA......................................................................................CAACCGATCACTTTTTGCCAATTCATCGTGAAGCTCCTGCCTTTGTTGAGCAGGCAACTGAACAACAAATTCTTGTTACTGGTATCAAG.......................................................................................................................................GTTGTTGATCTTCTTGCCCCTTACCAAAGGGGAGGAAAGATTGGGCTTTTTGGTGGTGCTGGTGTGGGAAAGACCGTGCTCATTATGGAACTGATTAACAACGTTGCAAAGGCACATG.....................................................................................GTGGTTTCTCCGTCTTTGCTGGTGTTGGTGAACGTACTCGTGAGGGCAATGATTTGTACAGGGAAATGATTGAAAGTGGTGTTATTAAGCTAGGTGAAAAGCAA................................................................................................AGTGAAAGCAAGTGCGCTCTTGTATATGGTCAAATGAATGAGCCCCCTGGTGCTCGTGCCCGTGTTGGCCTTACAGGATTGACTGTGGCTGAGCACTTCAGAGATGCTGAGGGGCAGGATGTGCTTCTCTTTATTGACAACATTTTCAGATTTACCCAG..................................................................................GCTAACTCAGAGGTCTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTCGGTTATCAACCAACTTTGGCTACAGATCTTGGAGGTCTTCAAGAGCGTATCACTACAACCAAGAAAGGTTCTATTACATCTGTCCAGGCTATCTATGTGCCTGCTGATGACTTGACAGATCCTGCCCCTGCAACTACCTTTGCTCACTTGGATGCCACGACTGTGTTGTCCCGTCAA................................................................................................ATTTCTGAGCTTGGTATTTATCCTGCTGTTGATCCACTTGATTCTACATCTCGTATGCTCTCACCTCACATTTTGGGAGAAGATCATTACAATACTGCTCGTGGGGTACAGAAAGTTCTTCAAAACTACAAGAATCTTCAAGATATTATTGCCATTTTGGGTATGGATGAGCTGAGTGAAGATGATAAGATGACTGTTGCCCGTGCACGTAAGATCCAGAGATTCCTCAGTCAGCCTTTCCATGTTGCTGAAGTTTTCACGGGTGCTCCTGGAAAATATGTTGACTTGAAGGAGAGCATTAACAGTTTCCAG.........................................................................................................................................................................................................................................................................................................................................................................GGAGTCCTGGACGGGAAATACGATGATCTTTCAGAACAATCATTCTATATGGTCGGTGGAATCGAGGAGGTCATTGCCAAGGCAGAGAAGATTGCCAAGGAATCTGCAGCTTAGATTATTAACTCCAGCAACTTTCTTTCATTATCTTCATCGATAACTACAGAAATAATTTAAGTTTCTGTGACACTGGATTTTTTTTTCCTGGGAGGACTAAGGGGTCCAAGATTTTCTGGTTTTTGTTTTTATATTCAACCCGGAATTGTGATAGGGAAGACATGGAGCTAAGGCCTACTTGCCAAACACCCACCCTTGACGCTCTGTTATGTCGCATAATAAAGGGGGTAAAACGGCAAACTTGTATATTTTACTTTGAATTCATCTTGAGAATGTTGGTTGCCCAAATTATGAGGGGTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U580858" ref_strand="+" ref_description="SGN-U580858 Tomato 200607#2 [39 ESTs aligned] (*GB) gi|157338878|emb|CAO42229.1| (e_value=3e-97) unnamed; (*ATH) AT1G15140.1 (e_value=6e-97) | Symbol: None | oxidoreductase NAD-binding domain-containing protein, Contains Pfam profile PF00175: Oxidoreductase NAD-binding domain; ESTs gb:H76345 and gb:AA651465 come from this gene | chr1:5210201-5212344 REVERSE | Aliases: F9L1.8, F9L1_8; (*SWP) sp|P43394|K502_ACTDE (e_value=2e-62) Fruit protein pKIWI502 OS=Actinidia deliciosa GN=pKIWI502; ">
      <seq>gccgccgtattctctagcctctccactcttctcggcggcgctttctagtttctatgattcttccttctcaccatataattggaaaaaaaaatgtcaatcctttctctctccttttctccatttccaaattcatctctctctcatctcagttcccatgctccctcccgtatccaatcactccatccttcttcatccatgaccctcctcaaacctctccaccaccatctccgtcgccgtctctccatctccgccgccgcagccgtccgtcaagacactaatctctggacaaccgcgcctctcgtcactgtttcacctgccgcggaatctctcttccacgtcaccatcgacgtgtccgattacccagacctagctaactcacacaccaaggcaggtcaatatcttcagcttcggattcctgacgtggagaaaccgtcgtttttagcgattgcatctccgccttcgcttgctgcagcgaaaggtgtgtttgagttccttgtgaaaagtatttctggctctacggcggagctactatgtggattgcagaaaggggatgttgtggagttgagtcaggttatggggaaaggatttgacttggatcaaatctctcctgcggaggagtatcagacggtcgtgatttttgcaaccggatctggaatcagcccaattagatccctgattgaggcagggtttggtgcagacaggagatctgatgttcgggtatattatggtgcacggaatttgaagagaatggcatatcaggataggtttgaaaactgggcatcctctggggttaaggttgtgccagtgttgtctcagcctgatgatgcttggaaaggtgaagacggctatgttcaggcagcatttgcccgagctaaaaacatttttaatcctcaatccaccggagcagtcctctgtggtcaaaagcaaatggctgaggaggtgacttctcttcttgtagcagatggagtctcaaccgagaagattctgaagaacttctgaacaattccaattttggttcgtcgtgttgtattattgtctagtataaaatcaatttattcgatttcacctgctggcttcaaggtattcagcatggtcaaacaacataatgtaacaatgttagccatcagccatcaggctatacaaagtccaatgtggctcgtatatgcattcaatcaaaattaattgttgaatagtcagtactaaagaaggaaaacgctataataccactgttcttgtttttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0244P17.1" temp_strand="+" temp_description="C05HBa0244P17.1  CU914756.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0244P17 sequenced_by:sanger upload_account_name:uk">
        <position start="126004" stop="131368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126304" g_stop="126962" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126963" i_stop="127810" i_length="848">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127811" g_stop="127910" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="759" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127911" i_stop="128019" i_length="109">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128020" g_stop="128115" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="855" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128116" i_stop="128210" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128211" g_stop="128291" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="856" r_stop="936" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128292" i_stop="130760" i_length="2469">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130761" g_stop="131068" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="937" r_stop="1244" r_length="308" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0244P17.1" gen_strand="+" ref_id="SGN-U580858" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1244</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0244P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U580858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126304" e_stop="126962"/>
          <exon e_start="127811" e_stop="127910"/>
          <exon e_start="128020" e_stop="128115"/>
          <exon e_start="128211" e_stop="128291"/>
          <exon e_start="130761" e_stop="131068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCCGTATTCTCTAGCCTCTCCACTCTTCTCGGCGGCGCTTTCTAGTTTCTATGATTCTTCCTTCTCACCATATAATTGGAAAAAAAAATGTCAATCCTTTCTCTCTCCTTTTCTCCATTTCCAAATTCATCTCTCTCTCATCTCAGTTCCCATGCTCCCTCCCGTATCCAATCACTCCATCCTTCTTCATCCATGACCCTCCTCAAACCTCTCCACCACCATCTCCGTCGCCGTCTCTCCATCTCCGCCGCCGCAGCCGTCCGTCAAGACACTAATCTCTGGACAACCGCGCCTCTCGTCACTGTTTCACCTGCCGCGGAATCTCTCTTCCACGTCACCATCGACGTGTCCGATTACCCAGACCTAGCTAACTCACACACCAAGGCAGGTCAATATCTTCAGCTTCGGATTCCTGACGTGGAGAAACCGTCGTTTTTAGCGATTGCATCTCCGCCTTCGCTTGCTGCAGCGAAAGGTGTGTTTGAGTTCCTTGTGAAAAGTATTTCTGGCTCTACGGCGGAGCTACTATGTGGATTGCAGAAAGGGGATGTTGTGGAGTTGAGTCAGGTTATGGGGAAAGGATTTGACTTGGATCAAATCTCTCCTGCGGAGGAGTATCAGACGGTCGTGATTTTTGCAACCGGATCTGGAATCAGGTAAACTATGACTCTAATCGGAAACAGAAAATTTAAGCTTTACTCTGTACTATTTTCCAAAATGATTTGCTATTTCTGTAGTTCCGTTTGTGTTGGAGTATAGAGGAATATTTTCGTTTTGTGTTCAGCTTTGAGATTGTTTGATAGATATGGTGCAGCGATAAGCTAATATATTCCAGAGTGAGTTTAAATTGAGATGAATGATTTATGGAATAGTTTTTCTGTGTAAGCATCTCTTTTATGGTTGATGAGATATATGGTTAAACTTTTGAAGTAAATTGCATATTCAGTAAGCTGTAAATGAGCTTGGGTTGTAGGAAAATACTTGAAAAATCTACTAGCTATGCCTATCGTTAATAAGTTCTGCAAACTCAACTTATATCATTTGCTAGTTGCTCTTGCATTTTCCCGTGTGTAGAGGTGTGAGATGCTGTGTTGACTTTAGATCACATTTCGGTGTTCTTTTGTAGTAGTTTTTTCTATGTTCTTTTCTAGTTAGCTTCAGTAAGCTGGTTAGACTTTTAGCAACCAATCATTAATCATCATTTAAATGTGATATTGTGAGTACATAGCCGATTCTATCAAGTTGAAGTTCACCAATGCTAAAAGCTACAATTTTCAATAGATGGATCATTGGGTTGTAGAGGTGATCTATTATATAGCTGCAAGCCTACTTCTCCTGATGTGAATGGTTGAACTTTGCATCATGCAGTTTGATCCCTTCCACATTAATATTTGTGTTAGTGAAAGGACTGAAAATATGTTGAGGTTTCACGTTTCTCTTTGAATTAGTTCAGTTTTTCTTTCGCCTGTTGCTCATTCGTTGATCTCAAATCTATATTTGGCAGCCCAATTAGATCCCTGATTGAGGCAGGGTTTGGTGCAGACAGGAGATCTGATGTTCGGGTATATTATGGTGCACGGAATTTGAAGAGAATGGCATATCAGGTTTGTTGTTTGCTTGCAACATGTAAACAAATTCTTTCTTTATTGTGGCGGAAGTACAAGATAAACTTTGTATCTGTTGTCTGATTTTGCTGCCCTTCAACTTTTACAGGATAGGTTTGAAAACTGGGCATCCTCTGGGGTTAAGGTTGTGCCAGTGTTGTCTCAGCCTGATGATGCTTGGAAAGGTGAAGACGGCTATGTTCAGGTAATGATTATGTTTACATTGTTATCCTCTTATCATCTTATTTTGGTTTTCTTTGTTACTCAACAATAATAGTTTTTTGCCATCTTCTTTTGCAGGCAGCATTTGCCCGAGCTAAAAACATTTTTAATCCTCAATCCACCGGAGCAGTCCTCTGTGGTCAAAAGCAAATGGCTGAGGTTTGTAGTTTGTTTACTTCAGAAGATTTGCTGTTCCTATCTTGTGTCTTTCCTTGCTCTTTCTGCATTTTGGAGATGCCAATGGCCTCTCTTGTTTTGCACTTTGTTTTTGTTTCACTGCTACTTGACCCTTCACCATTTACTATTCATCTATGAATCAAGAGAGCTGTTGTGTGAGAATGGTAGAACAGTATTATAAATATAAATTACCTGGACAAGTTGTATGGTGACCCAGACCTAAAGTATTACAATAGGAAGATATAAAAGCTTTCTATATGTAATCTAGAACATTAAGAGCTGAGATTCGATCACTTGGATTGTAAGCAAAAACTAATGTTGCTTTAAGTCAGTTAAACAGAAGATGAGCATTAGGAAAGCTGATAATTTTGACATTATGGTGCATTAATTAGATCTACTGCTAAAATAACTCTGCCCAACAGTAACCCTGTCCTAGGGATTCGCAACTCCAAATATATTAATCTTATAGACATCTAATGGATGGGAAAACTTTGATGTTGTAGAATATATCATTAAAAGATGATTAAGAAGGCAAACAGAAGAAGTGATTATCATCAGTTAATGTGACAATTTGGTGTGATAGAAGTACTTGATACTTCACGATGACTTTGCCAAATAACATGCTTTCTGGACTTTATAAAGTTGGCTGTTATTAACTCCCTTTGAACTACTATATATCCTATCCAAAATTGTCCTCCTACAAGGCCTTTATATCCACTTGTAACTTGGTATCCATACCGGAGACTAGAAGGGAAGCCTTGTGTGCCCTTCACCGGAAGAGGGCGATGATGGAGGAGATGAGTGCACTTGAGAAAAATGAGACATGGGAGATTCTTGAAGTTCGTTTACACAGTATGAGAAAGACAATTCTAAAGAATGGGACTAAGCAACTTTTTTACATTTCATACTTTAATATACCATCGACGTAACAATAACATTATAAAGCAATATAGGCATTTATCCCATCCATCCACCGAGCTCGTAAGGAAAGTAATGAAAACAAAGCACAATGATGTATCCTTCATTAAACTGATAACTTCCATAAATACTTCGTGGGTTTACACAATCCATTAGATGCTTTTTGGTAGTTTCTGTAAAAGTTACTGCTTTTCTTCATTAATTTAGTGTTCTTCATTTGTTGTGATTCTCATTGTGTTTTACCTCATATTCGGTCTATTAGTGAAACATGGGCGACTGAGTTTGTTCAGTAGGGGGTCTCAAGTTCGAAACCTCTTGCACGCTTTCTCGGTCGAGCTCATCGCATGCACGGGACATCTCTTGTGTGGTTTGCATGTTAGACTGGAGTCCACCCTGTGCACACTTGAAATAGTAGTCAATAACTTACGAAGAAGAACTTGAAAAGAAAACATTAATTTTGATTGAATAAGAACTCTAATATGAATTGAGTTTTGCTATAGAAAATTTTGAGTTAAGAGCTAGTTGCGCAGATTCCTCTTTCGATGTTGCACCTGTATCTGATTCTCCAAGAATAGGCTATTTTTGGGGATCCAACATGCACCGGTTGATATTTTTGAAGAGTTTGAGCAACTATTTCTATAAAAATAGGAGTGTAGAACATAGTGGTTAGATTCCGTTTGTCCATTGATTTAAGGTGATTAGTTTGGAAGTCTTGGTATTTTTATGGGATTAGGTCCATGGGATTTTAACTTTCATTAAGAAAGGTTTACTTCATAACTTGCTTTAGCAAGTGCATTTTCGCTAAGTGTATATATAGTTTTGGATTGGCATGACCACGTAGATTAATGCGACTTGTTCCTCCAACTGAAAGTAGGAATAAGAATTTCATTTGGATACATCGATATAATCATTCACAATATAATTCTGCTTGAAAAGAAGAAGAATAACAAACTTCCCTAGTTTCCTGCCCGCATATTCGGAAAAACACAAGCAAGTCATTATCTGCATAAGTCAGCAGCTCCAGCATCCCCCTTAAGTGCAAAGAATTTTAGGTAACCTAAAAAGGAGGAATGCTATTCTGCAGGCAGCTTATTTTCATCGAACATTTTCAGTAAAACTTAGTGACTTGTTCCTCTAACTGCGAGTTGATTTAGTTTGTGACTGAAATATTAAAACCAACATTTATTTTGATGTAGAATTTCTGCAACTTTCACTGTCTAATGGATATCCAAACGGGAAAAAACAGAGCATGAGAATCCATCCATAAGCCGGTTATTGTTGTAACATCTTACCTGCTTATCGTGAACTGCTTTATTCTTTAGGAAAGGAGTATTTTCTGTAATTTTTCTTGGCAATCAGTATAATTGTGTAGAATCGGCATGTCGTTGAAGGGGTTCAATATTCTTGGTTTAGAGTGCCATGTACTATTTATTACTAGACATGAGTGCAGAAGCTTTCAGTTTAACATAAGCATCAATATGTTTGGATCTTCGGCCCTGATTTACAATTTCTATCCCCTGATTCTTCTCGCAGGAGGTGACTTCTCTTCTTGTAGCAGATGGAGTCTCAACCGAGAAGATTCTGAAGAACTTCTGAACAATTCCAATTTTGGTTCGTCGTGTTGTATTATTGTCTAGTATAAAATCAATTTATTCGATTTCACCTGCTGGCTTCAAGGTATTCAGCATGGTCAAACAACATAATGTAACAATGTTAGCCATCAGCCATCAGGCTATACAAAGTCCAATGTGGCTCGTATATGCATTCAATCAAAATTAATTGTTGAATAGTCAGTACTAAAGAAGGAAAACGCTATAATACCACTGTTCTTGTTTTTGTTT</genome_strand>
        <mrna_strand>GCCGCCGTATTCTCTAGCCTCTCCACTCTTCTCGGCGGCGCTTTCTAGTTTCTATGATTCTTCCTTCTCACCATATAATTGGAAAAAAAAATGTCAATCCTTTCTCTCTCCTTTTCTCCATTTCCAAATTCATCTCTCTCTCATCTCAGTTCCCATGCTCCCTCCCGTATCCAATCACTCCATCCTTCTTCATCCATGACCCTCCTCAAACCTCTCCACCACCATCTCCGTCGCCGTCTCTCCATCTCCGCCGCCGCAGCCGTCCGTCAAGACACTAATCTCTGGACAACCGCGCCTCTCGTCACTGTTTCACCTGCCGCGGAATCTCTCTTCCACGTCACCATCGACGTGTCCGATTACCCAGACCTAGCTAACTCACACACCAAGGCAGGTCAATATCTTCAGCTTCGGATTCCTGACGTGGAGAAACCGTCGTTTTTAGCGATTGCATCTCCGCCTTCGCTTGCTGCAGCGAAAGGTGTGTTTGAGTTCCTTGTGAAAAGTATTTCTGGCTCTACGGCGGAGCTACTATGTGGATTGCAGAAAGGGGATGTTGTGGAGTTGAGTCAGGTTATGGGGAAAGGATTTGACTTGGATCAAATCTCTCCTGCGGAGGAGTATCAGACGGTCGTGATTTTTGCAACCGGATCTGGAATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATTAGATCCCTGATTGAGGCAGGGTTTGGTGCAGACAGGAGATCTGATGTTCGGGTATATTATGGTGCACGGAATTTGAAGAGAATGGCATATCAG.............................................................................................................GATAGGTTTGAAAACTGGGCATCCTCTGGGGTTAAGGTTGTGCCAGTGTTGTCTCAGCCTGATGATGCTTGGAAAGGTGAAGACGGCTATGTTCAG...............................................................................................GCAGCATTTGCCCGAGCTAAAAACATTTTTAATCCTCAATCCACCGGAGCAGTCCTCTGTGGTCAAAAGCAAATGGCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTGACTTCTCTTCTTGTAGCAGATGGAGTCTCAACCGAGAAGATTCTGAAGAACTTCTGAACAATTCCAATTTTGGTTCGTCGTGTTGTATTATTGTCTAGTATAAAATCAATTTATTCGATTTCACCTGCTGGCTTCAAGGTATTCAGCATGGTCAAACAACATAATGTAACAATGTTAGCCATCAGCCATCAGGCTATACAAAGTCCAATGTGGCTCGTATATGCATTCAATCAAAATTAATTGTTGAATAGTCAGTACTAAAGAAGGAAAACGCTATAATACCACTGTTCTTGTTTTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U571809" ref_strand="+" ref_description="SGN-U571809 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|77416985|gb|ABA81888.1| (e_value=8e-41) unknown; ">
      <seq>ctcatatcaacgagtcaaagctcttctcccttttcaacaaatcttctcatttttctccttttctggttcctcagattctttgaggaagttggtaggggggtgatttgagctagagatcggtcttttggctatctgtttcgtcgttataagagatttgtttgtctcttacatctggatggatgccaagaagtttatgcagttggtcgaggagaagaagaagagagctcttgagaagaaagaaggccacttgaaatgggagcaaaaacttgaagcttcagctaaagggaagtctgatgctgaagctggagagaaaaccaaggcagctaagcataaaaggaaatctgtctcggggtctgatagtgggagtgacactgacagtgagtatgaaaagaaaaaatccacgagaaagtcccataagaagcacaggaagcaccatagctcagatttggttgatttggataggaaggacaagaagtccaagcggaagccgaagagaaggtcctctgattccagtgatgatagctgtagggaatatgatggtaatttagaagaagatagaagaagaaagaagcgcggccacaagaagcataggcatcatgatagatactctgattcctccgactcttcagatgatgaagacgtgggaagaaaacaccattcaaagcatcacaaacgtcatcgacgatcacaaccgaatgaatcagagtcttccagtgatgatgaccatgttgcagctaggaaacgaagcaactcaaagcatcataaacgtcatgggaggttggactcagatgcttctgtctcttctagcgatgaagaaaaagtgaaccgtcgtaatcatggaaaacacaagaaacgtcatcacagaccccatagtcacgactcaaggtcttcggatcctgaagattttaggcatgagagaagtagattctttggtaaatcttctgatgagaatgaggaattagatagaaaagataagcacagtaagaatcatcatcgacatggtcatcaccatcccaaccatacgcatcgccactcagttgaagtgtcgaaggacaaccatcaacctcatgacagaaaggaaagaaatggcgagcgagtagaccatacttctgaggtgctcaatgtaagtgataacagtggtgctcgtgtgacacaaaatgcttagaatgctacccaatttatgttaattttccattttgtggagacttaaatggccaaggccattggagttttacagttggactgtaatattcatctaaaacccatatttcctactgttgaatctttaaagtgactatagcacatttgtgccattaatgattctactgtgtattaacaagaagtataatttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0244P17.1" temp_strand="-" temp_description="C05HBa0244P17.1  CU914756.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0244P17 sequenced_by:sanger upload_account_name:uk">
        <position start="138154" stop="132658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137854" g_stop="137781" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137780" i_stop="135238" i_length="2543">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135237" g_stop="135162" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="150" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="135161" i_stop="134162" i_length="1000">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.382" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134161" g_stop="132958" g_length="1204"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="1354" r_length="1204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0244P17.1" gen_strand="-" ref_id="SGN-U571809" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0244P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U571809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137854" e_stop="137781"/>
          <exon e_start="135237" e_stop="135162"/>
          <exon e_start="134161" e_stop="132958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATATCAACGAGTCAAAGCTCTTCTCCCTTTTCAACAAATCTTCTCATTTTTCTCCTTTTCTGGTTCCTCAGGTATCTTGATCTGCAAACTCGAGCTACTTTAATATCCATTAGCCTTTTTCATGTTGTTATATACTCTTTTTGGTGAATTTTATGTGATGTTACTAGCATTTCTAGGGTTTTGTTATGTTGCTTCTGTTTATGTTGAAAATCTGTACTTTTTGGTGAGGTAACTTGTATTCAAGGGTTTTATTCTGTTGCTTCTGGTTTACATTGAAAAAATCTGTACTTTTTTGGTGAGTTTATTTGGTGAGGTTGCGCTAGCGTTCTAGGTTTTTTTTTCCTATTGCTTTGGTTTTTTGTTGAATATCTCGTTAATTTTAGTCTAGGAAGCTTGATTTTTCCTCAAGTGGAGTAGTGCTGAGATGGGTTTTGTTCTGTTGCTTCAATTTTACATTGAAAAGCTCGTTACTTTTAGTCTAAGAAGCGTGATTTGTCCTCATATTGAATAATGCTGAGGTGGGTTTGGAGCGTCAAAATGCTGCCTGGTTCAAAATTCCTTGTCGTTGTTTTTGCTTGTTCTATTCTTTTTGGTGAGGTTACTAGCATTCTAGAGCTTTCAATTTACAGTGAAATATTGTTAATTTTAGTCTAAGAAAAAAGCTCCTTGTCCCTTTTCTTGTTTGTTGCATACTTTTTGGTGAGGCTATTAGCATTCTAGGGTTTTGTTCAGTTGACTTAATTTACATTGAAAATCTCGTTAATTTTAGTCTAAGATAAGAAGTTTGATTTGTCCACAAATCAAAATAGTACTGAGGTGGGTTTTGTTCTGTAACTTCAATTTACGTTGAAAAGCTTGTTAATTTTAGTCTAAGAAGTTTGATTTGTCCTGAAATTGGATAGTACTGAGGTGGGTCTGGATTGTAAAAACGTCAGTTGCTTCTAAATTCCTTGTTCTTTTCTTGTTGTTGTTTACTATTATTGCTTGAATTTTTTTTGGTGACGTGGCTAGCTTACCAGGGCTTCATTCTGTTGCCTTAGGTTGAAAATCTTCTTATTTTAGGTCTAAGAAGCTTGATTTTCCCCCAAATTGAATAGTTGTTTCAATTTATGTTGAAAAGCTTGTTGATTTTAGTCTAAGGAGCTTGATGTGTCCTCAAATTGAATAGTACTGAGGTGGGTATCTAAATCTGGAGGGACAAAGTTCTACATGAAATTAATTTTAATCAGGGTGTAGTTCTTGTATTGACCAAGCTAAGGCAGGACAAGTATCTAATGCTTTTAGAAACTGATAGGCAAACCTCCCTGTCCCTTTGCCCACCCCAAATCCATGTTTCTCTAACTGGGAAGCACGAACATCAAATTTCATGCTTCCTATACTTTTCACAATCAACTTTGACACAACACTGATTCATAGATGACAGCCATATAGCTATGTATCTACTTGTATCTTTTATATTTGTACTATTGGCACCACTAGTTTTGAAGTGTGGTTTTTCGTAATAGAAAACATTTCATTTTAGGTGATGCACTTCACTATATTGTTTGTGATGTTAGTCATGTAAAGCCAACAAAGTATATTTCTTTTGCCCTTCATTAATAGTTACCAATGTATTTCTTGAATGGGTACTACTTGCCACTTCTTTAGTTTTATGTTTAGAGCATACAGAGAAATAATATCATCTCCTGCGCTCATCATGTCATCATGATTTTTCAAATTTACATCCCAGTCCATGTCCATGTCCATGTGCTACATAATGCTAGTATGATGTAGTCTTGCTTAGCCTCCAAATGCGCATAAAAATGTTGCTCAGTTCATAAAAGGTTTGCCTTGTGAAAGGTCAAAAGGTTTTCCAACATTAATTGGAAGCGGAAGGTTAGTTCTCTACAGATGCGTATACATTATATAACAGTTAAATCTTCCCAAAACCCAAGGCACCAAGTCAAGTTACGTTGCACCTTTTATAGCTCTTCTTTAGCCTAAAAGTCCAGGCAATCATTGCTAAACCCACATACGACTAATAACTGACCGGGGTACATCAAACAAAAGCAACAATGCAATCAAAATTCAGAGTCTCGTCAAAAAAATTGAATTACTTATACCTGAATGTAAAAAAACTAGAAGTTCAAAACATACAGAAGTAGACAGCGCTGAGGTATTACAACTATAACATGCTGTTACAAGAAATTCTTGTAGAGGCACAACCTTTGCAGAAGAACAAATTTCGTCTCAATGAAAATAATGCCCCCTATTAGGATTCAAAGCAAAACTCTAAATTAATTATCTACTGCAAGAGACGGGGAAGCTCTCTCATAAGCTTATTTTGAGTTGAAGATTCAATAAAATGTCTTCTATTATATATAAATAGCTAAACTCAATATCTTGATAGAATAAGTGAGGAAATCTAACCCTATCAATTTGTAGTAATCAATTAAGAAAAAAAGTATATCAGTTCATTAATAAAGGATGTTATATTGTCAAGAAACTTACTGTTTGAATTGCAAATGGCCATTGAATAGTTCTCTTTAATCATGATTCATGAAAAGCAATTGAATCATATGGTTTAGGTGTGCAAAGTTGTATAACCTCTTTTTTTTTTTTTTTGGAAATGCAGATTCTTTGAGGAAGTTGGTAGGGGGGTGATTTGAGCTAGAGATCGGTCTTTTGGCTATCTGTTTCGTCGTTATAAGGTAAGAGACCTGTTTCAGTCTGCAATTCTACTTCTTTATTTTTTCGTCTTTGCACCATTCAATTGAAACTTCATTTGAGATGGTCTTGGAGTGGTTACATGAAGTTTGTCTAGTTGACAAAGAAATAAAATCTGAAAGTAGTTAGAACCTGCTTATGATCAAAAGTATATTATGACTCTGCCGATGATAGCTTGTTTGTTATTTTGGTCTAGGCTCATGGTCCAATGGAGTGTTGTTCTTTTTTACTGTTTTGAAAAGCAGTCTTATTTAAGCTTTTCATCGATCTGTTTCATATAGTCTGCGTTTTTAATTCAGTAAGTCTATCATAGATAATGGTTGTGCTTACCTTTAAATTTTAGCATCTGATTGATGAGTTCTTTAGTGCTAATTAGCTAGATAGAGATGCAAATAAGTGTAAACCAATGACAATGATGAATATGAAATATATGTTGTGTTGCATCATTATTAGTGCTTGGCTTGGTGGTTGGTAACTTTAATGTTTGCAACTATTTGTCATATGTGTATTCAGCGTTATGCTCAAATAATGATAAAGAATCTGTTACTTAAAGGACATTATTAGTCTAATTGCTCTTAGATATGAGATTTAGAACCTGTGACATATCTGGTTTGATAAAATATCACAGTAATAAATTATTTTTGCATATCATTAATGAATGTGGATTCCTGGTTTGATACCATATTGCAGTTAAATTTATTTATAGCCTGAAGTCCTTTGTGAATCATTTTCCTAAATCGTCCACATTTCTTACTGTCCCTTGGGTAGATCTATTTTGGATAATAGCCTGATCACATATGCATGTTCAAACTCTCCGCATGGGCATTTGCCTTTAAATTGATTGTCCTTTGTTCAATTTGAAGTAAATTTACTCTCATACAAACAAGCTCTGATTAATGGTGGACATTAGTGGTGGAAGAACTAACATTGTTTCCTTTCTCTTCTTTGAGATGCACTTCTGGTCATCATCATACCAAAATGCAGAGATTTGTTTGTCTCTTACATCTGGATGGATGCCAAGAAGTTTATGCAGTTGGTCGAGGAGAAGAAGAAGAGAGCTCTTGAGAAGAAAGAAGGCCACTTGAAATGGGAGCAAAAACTTGAAGCTTCAGCTAAAGGGAAGTCTGATGCTGAAGCTGGAGAGAAAACCAAGGCAGCTAAGCATAAAAGGAAATCTGTCTCGGGGTCTGATAGTGGGAGTGACACTGACAGTGAGTATGAAAAGAAAAAATCCACGAGAAAGTCCCATAAGAAGCACAGGAAGCACCATAGCTCAGATTTGGTTGATTTGGATAGGAAGGACAAGAAGTCCAAGCGGAAGCCGAAGAGAAGGTCCTCTGATTCCAGTGATGATAGCTGTAGGGAATATGATGGTAATTTAGAAGAAGATAGAAGAAGAAAGAAGCGCGGCCACAAGAAGCATAGGCATCATGATAGATACTCTGATTCCTCCGACTCTTCAGATGATGAAGACGTGGGAAGAAAACACCATTCAAAGCATCACAAACGTCATCGACGATCACAACCGAATGAATCAGAGTCTTCCAGTGATGATGACCATGTTGCAGCTAGGAAACGAAGCAACTCAAAGCATCATAAACGTCATGGGAGGTTGGACTCAGATGCTTCTGTCTCTTCTAGCGATGAAGAAAAAGTGAACCGTCGTAATCATGGAAAACACAAGAAACGTCATCACAGACCCCATAGTCACGACTCAAGGTCTTCGGATCCTGAAGATTTTAGGCATGAGAGAAGTAGATTCTTTGGTAAATCTTCTGATGAGAATGAGGAATTAGATAGAAAAGATAAGCACAGTAAGAATCATCATCGACATGGTCATCACCATCCCAACCATACGCATCGCCACTCAGTTGAAGTGTCGAAGGACAACCATCAACCTCATGACAGAAAGGAAAGAAATGGCGAGCGAGTAGACCATACTTCTGAGGTGCTCAATGTAAGTGATAACAGTGGTGCTCGTGTGACACAAAATGCTTAGAATGCTACCCAATTTATGTTAATTTTCCATTTTGTGGAGACTTAAATGGCCAAGGCCATTGGAGTTTTACAGTTGGACTGTAATATTCATCTAAAACCCATATTTCCTACTGTTGAATCTTTAAAGTGACTATAGCACATTTGTGCCATTAATGATTCTACTGTGTATTAACAAGAAGTATAATTTCGT</genome_strand>
        <mrna_strand>CTCATATCAACGAGTCAAAGCTCTTCTCCCTTTTCAACAAATCTTCTCATTTTTCTCCTTTTCTGGTTCCTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTGAGGAAGTTGGTAGGGGGGTGATTTGAGCTAGAGATCGGTCTTTTGGCTATCTGTTTCGTCGTTATAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGTTTGTCTCTTACATCTGGATGGATGCCAAGAAGTTTATGCAGTTGGTCGAGGAGAAGAAGAAGAGAGCTCTTGAGAAGAAAGAAGGCCACTTGAAATGGGAGCAAAAACTTGAAGCTTCAGCTAAAGGGAAGTCTGATGCTGAAGCTGGAGAGAAAACCAAGGCAGCTAAGCATAAAAGGAAATCTGTCTCGGGGTCTGATAGTGGGAGTGACACTGACAGTGAGTATGAAAAGAAAAAATCCACGAGAAAGTCCCATAAGAAGCACAGGAAGCACCATAGCTCAGATTTGGTTGATTTGGATAGGAAGGACAAGAAGTCCAAGCGGAAGCCGAAGAGAAGGTCCTCTGATTCCAGTGATGATAGCTGTAGGGAATATGATGGTAATTTAGAAGAAGATAGAAGAAGAAAGAAGCGCGGCCACAAGAAGCATAGGCATCATGATAGATACTCTGATTCCTCCGACTCTTCAGATGATGAAGACGTGGGAAGAAAACACCATTCAAAGCATCACAAACGTCATCGACGATCACAACCGAATGAATCAGAGTCTTCCAGTGATGATGACCATGTTGCAGCTAGGAAACGAAGCAACTCAAAGCATCATAAACGTCATGGGAGGTTGGACTCAGATGCTTCTGTCTCTTCTAGCGATGAAGAAAAAGTGAACCGTCGTAATCATGGAAAACACAAGAAACGTCATCACAGACCCCATAGTCACGACTCAAGGTCTTCGGATCCTGAAGATTTTAGGCATGAGAGAAGTAGATTCTTTGGTAAATCTTCTGATGAGAATGAGGAATTAGATAGAAAAGATAAGCACAGTAAGAATCATCATCGACATGGTCATCACCATCCCAACCATACGCATCGCCACTCAGTTGAAGTGTCGAAGGACAACCATCAACCTCATGACAGAAAGGAAAGAAATGGCGAGCGAGTAGACCATACTTCTGAGGTGCTCAATGTAAGTGATAACAGTGGTGCTCGTGTGACACAAAATGCTTAGAATGCTACCCAATTTATGTTAATTTTCCATTTTGTGGAGACTTAAATGGCCAAGGCCATTGGAGTTTTACAGTTGGACTGTAATATTCATCTAAAACCCATATTTCCTACTGTTGAATCTTTAAAGTGACTATAGCACATTTGTGCCATTAATGATTCTACTGTGTATTAACAAGAAGTATAATTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U571808" ref_strand="+" ref_description="SGN-U571808 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|77416985|gb|ABA81888.1| (e_value=2e-46) unknown; ">
      <seq>ctcatatcaacgagtcaaagctcttctcccttttcaacaaatcttctcatttttctccttttctggttcctcagattctttgaggaagttggtaggggggtgatttgagctagagatcggtcttttggctatctgtttcgtcgttataagatgcacttctggtcatcatcataccaaaatgcagagatttgtttgtctcttacatctggatggatgccaagaagtttatgcagttggtcgaggagaagaagaagagagctcttgagaagaaagaaggccacttgaaatgggagcaaaaacttgaagcttcagctaaagggaagtctgatgctgaagctggagagaaaaccaaggcagctaagcataaaaggaaatctgtctcggggtctgatagtgggagtgacactgacagtgagtatgaaaagaaaaaatccacgagaaagtcccataagaagcacaggaagcaccatagctcagatttggttgatttggataggaaggacaagaagtccaagcggaagccgaagagaaggtcctctgattccagtgatgatagctgtagggaatatgatggtaatttagaagaagatagaagaagaaagaagcgcggccacaagaagcataggcatcatgatagatactctgattcctccgactcttcagatgatgaagacgtgggaagaaaacaccattcaaagcatcacaaacgtcatcgacgatcacaaccgaatgaatcagagtcttccagtgatgatgaccatgttgcagctaggaaacgaagcaactcaaagcatcataaacgtcatgggaggttggactcagatgcttctgtctcttctagcgatggagaaaaagtgaaccgtcgtaatcatggaaaacacaagaaacgtcatcacagaccccatagtcacgactcaaggtcttcggatcctgaagattttaggcatgagagaagtagattctttggtaaatcttctgatgagaatgaggaattagatagaaaagataagcacagtaagaatcatcatcgacatggtcatcaccatcccaaccatacgcatcgccactcagttgaagtgtcgaaggacaaccatcaacctcatgacagaaaggaaagaaatggcgagcgagtagaccatacttctgaggtgctcaatgtaagtgataacagtggtgctcgtgtgacacaaaatgcttagaatgctacccaatttatgttaattttccattttgtggagacttaaatggccaaggccattggagttttacagttggactgtaatattcatctaaaacccatatttcctactgttgaatctttaaagtgactatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0244P17.1" temp_strand="-" temp_description="C05HBa0244P17.1  CU914756.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0244P17 sequenced_by:sanger upload_account_name:uk">
        <position start="138154" stop="132712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137854" g_stop="137781" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137780" i_stop="135238" i_length="2543">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135237" g_stop="135162" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="150" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="135161" i_stop="134196" i_length="966">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134195" g_stop="133012" g_length="1184"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="1334" r_length="1184" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0244P17.1" gen_strand="-" ref_id="SGN-U571808" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0244P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U571808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137854" e_stop="137781"/>
          <exon e_start="135237" e_stop="135162"/>
          <exon e_start="134195" e_stop="133012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATATCAACGAGTCAAAGCTCTTCTCCCTTTTCAACAAATCTTCTCATTTTTCTCCTTTTCTGGTTCCTCAGGTATCTTGATCTGCAAACTCGAGCTACTTTAATATCCATTAGCCTTTTTCATGTTGTTATATACTCTTTTTGGTGAATTTTATGTGATGTTACTAGCATTTCTAGGGTTTTGTTATGTTGCTTCTGTTTATGTTGAAAATCTGTACTTTTTGGTGAGGTAACTTGTATTCAAGGGTTTTATTCTGTTGCTTCTGGTTTACATTGAAAAAATCTGTACTTTTTTGGTGAGTTTATTTGGTGAGGTTGCGCTAGCGTTCTAGGTTTTTTTTTCCTATTGCTTTGGTTTTTTGTTGAATATCTCGTTAATTTTAGTCTAGGAAGCTTGATTTTTCCTCAAGTGGAGTAGTGCTGAGATGGGTTTTGTTCTGTTGCTTCAATTTTACATTGAAAAGCTCGTTACTTTTAGTCTAAGAAGCGTGATTTGTCCTCATATTGAATAATGCTGAGGTGGGTTTGGAGCGTCAAAATGCTGCCTGGTTCAAAATTCCTTGTCGTTGTTTTTGCTTGTTCTATTCTTTTTGGTGAGGTTACTAGCATTCTAGAGCTTTCAATTTACAGTGAAATATTGTTAATTTTAGTCTAAGAAAAAAGCTCCTTGTCCCTTTTCTTGTTTGTTGCATACTTTTTGGTGAGGCTATTAGCATTCTAGGGTTTTGTTCAGTTGACTTAATTTACATTGAAAATCTCGTTAATTTTAGTCTAAGATAAGAAGTTTGATTTGTCCACAAATCAAAATAGTACTGAGGTGGGTTTTGTTCTGTAACTTCAATTTACGTTGAAAAGCTTGTTAATTTTAGTCTAAGAAGTTTGATTTGTCCTGAAATTGGATAGTACTGAGGTGGGTCTGGATTGTAAAAACGTCAGTTGCTTCTAAATTCCTTGTTCTTTTCTTGTTGTTGTTTACTATTATTGCTTGAATTTTTTTTGGTGACGTGGCTAGCTTACCAGGGCTTCATTCTGTTGCCTTAGGTTGAAAATCTTCTTATTTTAGGTCTAAGAAGCTTGATTTTCCCCCAAATTGAATAGTTGTTTCAATTTATGTTGAAAAGCTTGTTGATTTTAGTCTAAGGAGCTTGATGTGTCCTCAAATTGAATAGTACTGAGGTGGGTATCTAAATCTGGAGGGACAAAGTTCTACATGAAATTAATTTTAATCAGGGTGTAGTTCTTGTATTGACCAAGCTAAGGCAGGACAAGTATCTAATGCTTTTAGAAACTGATAGGCAAACCTCCCTGTCCCTTTGCCCACCCCAAATCCATGTTTCTCTAACTGGGAAGCACGAACATCAAATTTCATGCTTCCTATACTTTTCACAATCAACTTTGACACAACACTGATTCATAGATGACAGCCATATAGCTATGTATCTACTTGTATCTTTTATATTTGTACTATTGGCACCACTAGTTTTGAAGTGTGGTTTTTCGTAATAGAAAACATTTCATTTTAGGTGATGCACTTCACTATATTGTTTGTGATGTTAGTCATGTAAAGCCAACAAAGTATATTTCTTTTGCCCTTCATTAATAGTTACCAATGTATTTCTTGAATGGGTACTACTTGCCACTTCTTTAGTTTTATGTTTAGAGCATACAGAGAAATAATATCATCTCCTGCGCTCATCATGTCATCATGATTTTTCAAATTTACATCCCAGTCCATGTCCATGTCCATGTGCTACATAATGCTAGTATGATGTAGTCTTGCTTAGCCTCCAAATGCGCATAAAAATGTTGCTCAGTTCATAAAAGGTTTGCCTTGTGAAAGGTCAAAAGGTTTTCCAACATTAATTGGAAGCGGAAGGTTAGTTCTCTACAGATGCGTATACATTATATAACAGTTAAATCTTCCCAAAACCCAAGGCACCAAGTCAAGTTACGTTGCACCTTTTATAGCTCTTCTTTAGCCTAAAAGTCCAGGCAATCATTGCTAAACCCACATACGACTAATAACTGACCGGGGTACATCAAACAAAAGCAACAATGCAATCAAAATTCAGAGTCTCGTCAAAAAAATTGAATTACTTATACCTGAATGTAAAAAAACTAGAAGTTCAAAACATACAGAAGTAGACAGCGCTGAGGTATTACAACTATAACATGCTGTTACAAGAAATTCTTGTAGAGGCACAACCTTTGCAGAAGAACAAATTTCGTCTCAATGAAAATAATGCCCCCTATTAGGATTCAAAGCAAAACTCTAAATTAATTATCTACTGCAAGAGACGGGGAAGCTCTCTCATAAGCTTATTTTGAGTTGAAGATTCAATAAAATGTCTTCTATTATATATAAATAGCTAAACTCAATATCTTGATAGAATAAGTGAGGAAATCTAACCCTATCAATTTGTAGTAATCAATTAAGAAAAAAAGTATATCAGTTCATTAATAAAGGATGTTATATTGTCAAGAAACTTACTGTTTGAATTGCAAATGGCCATTGAATAGTTCTCTTTAATCATGATTCATGAAAAGCAATTGAATCATATGGTTTAGGTGTGCAAAGTTGTATAACCTCTTTTTTTTTTTTTTTGGAAATGCAGATTCTTTGAGGAAGTTGGTAGGGGGGTGATTTGAGCTAGAGATCGGTCTTTTGGCTATCTGTTTCGTCGTTATAAGGTAAGAGACCTGTTTCAGTCTGCAATTCTACTTCTTTATTTTTTCGTCTTTGCACCATTCAATTGAAACTTCATTTGAGATGGTCTTGGAGTGGTTACATGAAGTTTGTCTAGTTGACAAAGAAATAAAATCTGAAAGTAGTTAGAACCTGCTTATGATCAAAAGTATATTATGACTCTGCCGATGATAGCTTGTTTGTTATTTTGGTCTAGGCTCATGGTCCAATGGAGTGTTGTTCTTTTTTACTGTTTTGAAAAGCAGTCTTATTTAAGCTTTTCATCGATCTGTTTCATATAGTCTGCGTTTTTAATTCAGTAAGTCTATCATAGATAATGGTTGTGCTTACCTTTAAATTTTAGCATCTGATTGATGAGTTCTTTAGTGCTAATTAGCTAGATAGAGATGCAAATAAGTGTAAACCAATGACAATGATGAATATGAAATATATGTTGTGTTGCATCATTATTAGTGCTTGGCTTGGTGGTTGGTAACTTTAATGTTTGCAACTATTTGTCATATGTGTATTCAGCGTTATGCTCAAATAATGATAAAGAATCTGTTACTTAAAGGACATTATTAGTCTAATTGCTCTTAGATATGAGATTTAGAACCTGTGACATATCTGGTTTGATAAAATATCACAGTAATAAATTATTTTTGCATATCATTAATGAATGTGGATTCCTGGTTTGATACCATATTGCAGTTAAATTTATTTATAGCCTGAAGTCCTTTGTGAATCATTTTCCTAAATCGTCCACATTTCTTACTGTCCCTTGGGTAGATCTATTTTGGATAATAGCCTGATCACATATGCATGTTCAAACTCTCCGCATGGGCATTTGCCTTTAAATTGATTGTCCTTTGTTCAATTTGAAGTAAATTTACTCTCATACAAACAAGCTCTGATTAATGGTGGACATTAGTGGTGGAAGAACTAACATTGTTTCCTTTCTCTTCTTTGAGATGCACTTCTGGTCATCATCATACCAAAATGCAGAGATTTGTTTGTCTCTTACATCTGGATGGATGCCAAGAAGTTTATGCAGTTGGTCGAGGAGAAGAAGAAGAGAGCTCTTGAGAAGAAAGAAGGCCACTTGAAATGGGAGCAAAAACTTGAAGCTTCAGCTAAAGGGAAGTCTGATGCTGAAGCTGGAGAGAAAACCAAGGCAGCTAAGCATAAAAGGAAATCTGTCTCGGGGTCTGATAGTGGGAGTGACACTGACAGTGAGTATGAAAAGAAAAAATCCACGAGAAAGTCCCATAAGAAGCACAGGAAGCACCATAGCTCAGATTTGGTTGATTTGGATAGGAAGGACAAGAAGTCCAAGCGGAAGCCGAAGAGAAGGTCCTCTGATTCCAGTGATGATAGCTGTAGGGAATATGATGGTAATTTAGAAGAAGATAGAAGAAGAAAGAAGCGCGGCCACAAGAAGCATAGGCATCATGATAGATACTCTGATTCCTCCGACTCTTCAGATGATGAAGACGTGGGAAGAAAACACCATTCAAAGCATCACAAACGTCATCGACGATCACAACCGAATGAATCAGAGTCTTCCAGTGATGATGACCATGTTGCAGCTAGGAAACGAAGCAACTCAAAGCATCATAAACGTCATGGGAGGTTGGACTCAGATGCTTCTGTCTCTTCTAGCGATGAAGAAAAAGTGAACCGTCGTAATCATGGAAAACACAAGAAACGTCATCACAGACCCCATAGTCACGACTCAAGGTCTTCGGATCCTGAAGATTTTAGGCATGAGAGAAGTAGATTCTTTGGTAAATCTTCTGATGAGAATGAGGAATTAGATAGAAAAGATAAGCACAGTAAGAATCATCATCGACATGGTCATCACCATCCCAACCATACGCATCGCCACTCAGTTGAAGTGTCGAAGGACAACCATCAACCTCATGACAGAAAGGAAAGAAATGGCGAGCGAGTAGACCATACTTCTGAGGTGCTCAATGTAAGTGATAACAGTGGTGCTCGTGTGACACAAAATGCTTAGAATGCTACCCAATTTATGTTAATTTTCCATTTTGTGGAGACTTAAATGGCCAAGGCCATTGGAGTTTTACAGTTGGACTGTAATATTCATCTAAAACCCATATTTCCTACTGTTGAATCTTTAAAGTGACTATAG</genome_strand>
        <mrna_strand>CTCATATCAACGAGTCAAAGCTCTTCTCCCTTTTCAACAAATCTTCTCATTTTTCTCCTTTTCTGGTTCCTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTGAGGAAGTTGGTAGGGGGGTGATTTGAGCTAGAGATCGGTCTTTTGGCTATCTGTTTCGTCGTTATAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCACTTCTGGTCATCATCATACCAAAATGCAGAGATTTGTTTGTCTCTTACATCTGGATGGATGCCAAGAAGTTTATGCAGTTGGTCGAGGAGAAGAAGAAGAGAGCTCTTGAGAAGAAAGAAGGCCACTTGAAATGGGAGCAAAAACTTGAAGCTTCAGCTAAAGGGAAGTCTGATGCTGAAGCTGGAGAGAAAACCAAGGCAGCTAAGCATAAAAGGAAATCTGTCTCGGGGTCTGATAGTGGGAGTGACACTGACAGTGAGTATGAAAAGAAAAAATCCACGAGAAAGTCCCATAAGAAGCACAGGAAGCACCATAGCTCAGATTTGGTTGATTTGGATAGGAAGGACAAGAAGTCCAAGCGGAAGCCGAAGAGAAGGTCCTCTGATTCCAGTGATGATAGCTGTAGGGAATATGATGGTAATTTAGAAGAAGATAGAAGAAGAAAGAAGCGCGGCCACAAGAAGCATAGGCATCATGATAGATACTCTGATTCCTCCGACTCTTCAGATGATGAAGACGTGGGAAGAAAACACCATTCAAAGCATCACAAACGTCATCGACGATCACAACCGAATGAATCAGAGTCTTCCAGTGATGATGACCATGTTGCAGCTAGGAAACGAAGCAACTCAAAGCATCATAAACGTCATGGGAGGTTGGACTCAGATGCTTCTGTCTCTTCTAGCGATGGAGAAAAAGTGAACCGTCGTAATCATGGAAAACACAAGAAACGTCATCACAGACCCCATAGTCACGACTCAAGGTCTTCGGATCCTGAAGATTTTAGGCATGAGAGAAGTAGATTCTTTGGTAAATCTTCTGATGAGAATGAGGAATTAGATAGAAAAGATAAGCACAGTAAGAATCATCATCGACATGGTCATCACCATCCCAACCATACGCATCGCCACTCAGTTGAAGTGTCGAAGGACAACCATCAACCTCATGACAGAAAGGAAAGAAATGGCGAGCGAGTAGACCATACTTCTGAGGTGCTCAATGTAAGTGATAACAGTGGTGCTCGTGTGACACAAAATGCTTAGAATGCTACCCAATTTATGTTAATTTTCCATTTTGTGGAGACTTAAATGGCCAAGGCCATTGGAGTTTTACAGTTGGACTGTAATATTCATCTAAAACCCATATTTCCTACTGTTGAATCTTTAAAGTGACTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U595264" ref_strand="+" ref_description="SGN-U595264 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>atattttagcatctgattgatgagttctttagtgctaattagctagatagagatgcaaataagtgtaaaccaatgacaatgatgaatatgaaatatatgttgtgttgcatcattattagtgcttggcttggtggttggtaactttaatgtttgcaactatttgtcatatgtgtattcagcgttatgctcaaataatgataaagaatctgttacttaaaggacattattagtctaattgctcttagatatgagatttagaacctgtgacatatctggtttgataaaatatcacagtaataaattatttttgcatatcattaatgaatgtggattcctggtttgataccatattgcagttaaatttatttatagcctgaagtcctttgtgaatcattttcctaaatcgtccacatttcttactgtcccttgggtagatctattttggataatagcctgatcacatatgcatgttcaaactctccgcatgggcatttgcctttaaattgattgtcctttgttcaatttgaagtaaatttactctcatacaaacaagctctgattaatggtggacattagtggtggaagaactaacattgtttcctttctcttctttgagatgcacttctggtcatcatcataccaaaatgcagagatttgtttgtctcttacatctggatggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0244P17-VzUiH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0244P17.1" temp_strand="-" temp_description="C05HBa0244P17.1  CU914756.3 htgs_phase:3 submitted_to_sgn_as:C05HBa0244P17 sequenced_by:sanger upload_account_name:uk">
        <position start="135111" stop="133829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134811" g_stop="134129" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0244P17.1" gen_strand="-" ref_id="SGN-U595264" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0244P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U595264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134811" e_stop="134129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTAGCATCTGATTGATGAGTTCTTTAGTGCTAATTAGCTAGATAGAGATGCAAATAAGTGTAAACCAATGACAATGATGAATATGAAATATATGTTGTGTTGCATCATTATTAGTGCTTGGCTTGGTGGTTGGTAACTTTAATGTTTGCAACTATTTGTCATATGTGTATTCAGCGTTATGCTCAAATAATGATAAAGAATCTGTTACTTAAAGGACATTATTAGTCTAATTGCTCTTAGATATGAGATTTAGAACCTGTGACATATCTGGTTTGATAAAATATCACAGTAATAAATTATTTTTGCATATCATTAATGAATGTGGATTCCTGGTTTGATACCATATTGCAGTTAAATTTATTTATAGCCTGAAGTCCTTTGTGAATCATTTTCCTAAATCGTCCACATTTCTTACTGTCCCTTGGGTAGATCTATTTTGGATAATAGCCTGATCACATATGCATGTTCAAACTCTCCGCATGGGCATTTGCCTTTAAATTGATTGTCCTTTGTTCAATTTGAAGTAAATTTACTCTCATACAAACAAGCTCTGATTAATGGTGGACATTAGTGGTGGAAGAACTAACATTGTTTCCTTTCTCTTCTTTGAGATGCACTTCTGGTCATCATCATACCAAAATGCAGAGATTTGTTTGTCTCTTACATCTGGATGGATGC</genome_strand>
        <mrna_strand>ATATTTTAGCATCTGATTGATGAGTTCTTTAGTGCTAATTAGCTAGATAGAGATGCAAATAAGTGTAAACCAATGACAATGATGAATATGAAATATATGTTGTGTTGCATCATTATTAGTGCTTGGCTTGGTGGTTGGTAACTTTAATGTTTGCAACTATTTGTCATATGTGTATTCAGCGTTATGCTCAAATAATGATAAAGAATCTGTTACTTAAAGGACATTATTAGTCTAATTGCTCTTAGATATGAGATTTAGAACCTGTGACATATCTGGTTTGATAAAATATCACAGTAATAAATTATTTTTGCATATCATTAATGAATGTGGATTCCTGGTTTGATACCATATTGCAGTTAAATTTATTTATAGCCTGAAGTCCTTTGTGAATCATTTTCCTAAATCGTCCACATTTCTTACTGTCCCTTGGGTAGATCTATTTTGGATAATAGCCTGATCACATATGCATGTTCAAACTCTCCGCATGGGCATTTGCCTTTAAATTGATTGTCCTTTGTTCAATTTGAAGTAAATTTACTCTCATACAAACAAGCTCTGATTAATGGTGGACATTAGTGGTGGAAGAACTAACATTGTTTCCTTTCTCTTCTTTGAGATGCACTTCTGGTCATCATCATACCAAAATGCAGAGATTTGTTTGTCTCTTACATCTGGATGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>21</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="218" PGL_stop="3772"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="218" e_stop="258"/>
            <exon e_start="457" e_stop="549"/>
            <exon e_start="656" e_stop="727"/>
            <exon e_start="812" e_stop="912"/>
            <exon e_start="1347" e_stop="1445"/>
            <exon e_start="2845" e_stop="2984"/>
            <exon e_start="3457" e_stop="3772"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.907" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.815" acc_prob="0.674" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="218" e_stop="258" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.932">
            <gDNA_intron_boundary i_start="259" i_stop="456" i_length="198"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="457" e_stop="549" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.993">
            <gDNA_intron_boundary i_start="550" i_stop="655" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="656" e_stop="727" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.930" acc_prob="0.992">
            <gDNA_intron_boundary i_start="728" i_stop="811" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="812" e_stop="912" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="913" i_stop="1346" i_length="434"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1347" e_stop="1445" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.907" acc_prob="0.989">
            <gDNA_intron_boundary i_start="1446" i_stop="2844" i_length="1399"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2845" e_stop="2984" e_length="140"/>
          </exon>
          <intron i_serial="6" don_prob="0.815" acc_prob="0.674">
            <gDNA_intron_boundary i_start="2985" i_stop="3456" i_length="472"/>
          </intron>
          <exon e_serial="7" e_score="0.981">
            <gDNA_exon_boundary e_start="3457" e_stop="3772" e_length="316"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="218" stop="258"/>
              <exon start="457" stop="549"/>
              <exon start="656" stop="727"/>
              <exon start="812" stop="912"/>
              <exon start="1347" stop="1445"/>
              <exon start="2845" stop="2984"/>
              <exon start="3457" stop="3772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566183" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTTGATCTCATTCTCTCTTCGTCCACTCTGAGCATTTGG : CGAGTTGTAGCGAAGATTGTGGTGAAGTTCACTTTTTTAGCATTGAAAATGACAAGTTATTATGATATTGATGATATATTAGCTGAGGAAGAG : ATGGTTCCAGCTGTGTTCTTGCAAACAGCTAATGAAGTTGGGATATTTGATTGTGCTGATGACACTAACAAG : GTTGAAGCTGGTACACATGTAGAAATGCCCTTTTGGCTTGCTCAGGAGCTATATGTGAGACAAGTGGTATCGATCAAAGTTCCTCCATATTTTGATACCAA : AGCCAAGACGAGGAATGAAATAGGAGCTGATGCAGCACATGTTGATCTAAGGAGTTTATGTCCATACTTTTATGATTTTGGATGCAAGATAGCACGCCT : GATTGGTGAAAAAACCATTGGACCTCTACTTCTGGTTGCATTTCGAACAAGATATAGAGAAGTCCTCATCAAGGCTCATACTGCAGCATCAATTGTGGCACCCAAGCACTTTTCTCTTCTTACAAAAGAAGAGACTAAAT : TGTATGAAGCTGGTCAATCCTCAACAGCTGCATTTAAGAAGTGGAGAATGGGAGGTCCTAGACTGCAGAAAGCTTCTGTACTTGGGAGAAAGAGGAAGCCTGTTGAATGAGTTTTTGTACTTGAAACATATGATCAATGTGAAGATGTGTTTGTAGTATCTATTTGGCTATTCAATGAGATTTACATCTCCTTTCAACTAAAACAGATTGTTTGGTACGGCGTACAAAAATAGTATTAAATAAAATGTATTAGTAATGTTGACATTACTATCGACTGTTTGATTTGTGTATTAAATGAATAGAGACAGTGTATTAG</gDNA_template>
            <first_frame> G  L  I  S  F  S  L  R  P  L  *  A  F  G :   E  L  *  R  R  L  W  *  S  S  L  F  *  H  *  K  *  Q  V  I  M  I  L  M  I  Y  *  L  R  K  R :   W  F  Q  L  C  S  C  K  Q  L  M  K  L  G  Y  L  I  V  L  M  T  L  T  R :   L  K  L  V  H  M  *  K  C  P  F  G  L  L  R  S  Y  M  *  D  K  W  Y  R  S  K  F  L  H  I  L  I  P   : K  P  R  R  G  M  K  *  E  L  M  Q  H  M  L  I  *  G  V  Y  V  H  T  F  M  I  L  D  A  R  *  H  A   : *  L  V  K  K  P  L  D  L  Y  F  W  L  H  F  E  Q  D  I  E  K  S  S  S  R  L  I  L  Q  H  Q  L  W  H  P  S  T  F  L  F  L  Q  K  K  R  L  N  :  C  M  K  L  V  N  P  Q  Q  L  H  L  R  S  G  E  W  E  V  L  D  C  R  K  L  L  Y  L  G  E  R  G  S  L  L  N  E  F  L  Y  L  K  H  M  I  N  V  K  M  C  L  *  Y  L  F  G  Y  S  M  R  F  T  S  P  F  N  *  N  R  L  F  G  T  A  Y  K  N  S  I  K  *  N  V  L  V  M  L  T  L  L  S  T  V  *  F  V  Y  *  M  N  R  D  S  V  L  </first_frame>
            <second_frame>  V  *  S  H  S  L  F  V  H  S  E  H  L   : A  S  C  S  E  D  C  G  E  V  H  F  F  S  I  E  N  D  K  L  L  *  Y  *  *  Y  I  S  *  G  R   : D  G  S  S  C  V  L  A  N  S  *  *  S  W  D  I  *  L  C  *  *  H  *  Q   : G  *  S  W  Y  T  C  R  N  A  L  L  A  C  S  G  A  I  C  E  T  S  G  I  D  Q  S  S  S  I  F  *  Y  Q  :  S  Q  D  E  E  *  N  R  S  *  C  S  T  C  *  S  K  E  F  M  S  I  L  L  *  F  W  M  Q  D  S  T  P  :  D  W  *  K  N  H  W  T  S  T  S  G  C  I  S  N  K  I  *  R  S  P  H  Q  G  S  Y  C  S  I  N  C  G  T  Q  A  L  F  S  S  Y  K  R  R  D  *  I :   V  *  S  W  S  I  L  N  S  C  I  *  E  V  E  N  G  R  S  *  T  A  E  S  F  C  T  W  E  K  E  E  A  C  *  M  S  F  C  T  *  N  I  *  S  M  *  R  C  V  C  S  I  Y  L  A  I  Q  *  D  L  H  L  L  S  T  K  T  D  C  L  V  R  R  T  K  I  V  L  N  K  M  Y  *  *  C  *  H  Y  Y  R  L  F  D  L  C  I  K  *  I  E  T  V  Y  * </second_frame>
            <third_frame>   F  D  L  I  L  S  S  S  T  L  S  I  W  :  R  V  V  A  K  I  V  V  K  F  T  F  L  A  L  K  M  T  S  Y  Y  D  I  D  D  I  L  A  E  E  E  :  M  V  P  A  V  F  L  Q  T  A  N  E  V  G  I  F  D  C  A  D  D  T  N  K  :  V  E  A  G  T  H  V  E  M  P  F  W  L  A  Q  E  L  Y  V  R  Q  V  V  S  I  K  V  P  P  Y  F  D  T  K :   A  K  T  R  N  E  I  G  A  D  A  A  H  V  D  L  R  S  L  C  P  Y  F  Y  D  F  G  C  K  I  A  R  L :   I  G  E  K  T  I  G  P  L  L  L  V  A  F  R  T  R  Y  R  E  V  L  I  K  A  H  T  A  A  S  I  V  A  P  K  H  F  S  L  L  T  K  E  E  T  K   : L  Y  E  A  G  Q  S  S  T  A  A  F  K  K  W  R  M  G  G  P  R  L  Q  K  A  S  V  L  G  R  K  R  K  P  V  E  *  V  F  V  L  E  T  Y  D  Q  C  E  D  V  F  V  V  S  I  W  L  F  N  E  I  Y  I  S  F  Q  L  K  Q  I  V  W  Y  G  V  Q  K  *  Y  *  I  K  C  I  S  N  V  D  I  T  I  D  C  L  I  C  V  L  N  E  *  R  Q  C  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0244P17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="220" stop="258"/>
                    <exon start="457" stop="549"/>
                    <exon start="656" stop="727"/>
                    <exon start="812" stop="912"/>
                    <exon start="1347" stop="1445"/>
                    <exon start="2845" stop="2984"/>
                    <exon start="3457" stop="3566"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDLILSSSTLSIWRVVAKIVVKFTFLALKMTSYYDIDDILAEEEMVPAVFLQTANEVGIFDCADDTNKVEAGTHVEMPFWLAQELYVRQVVSIKVPPYFDTKAKTRNEIGADAAHVDLRSLCPYFYDFGCKIARLIGEKTIGPLLLVAFRTRYREVLIKAHTAASIVAPKHFSLLTKEETKLYEAGQSSTAAFKKWRMGGPRLQKASVLGRKRKPVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9990" PGL_stop="4273"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9990" e_stop="9526"/>
            <exon e_start="7505" e_stop="7458"/>
            <exon e_start="7270" e_stop="7094"/>
            <exon e_start="6999" e_stop="6849"/>
            <exon e_start="6739" e_stop="6653"/>
            <exon e_start="6542" e_stop="6418"/>
            <exon e_start="5429" e_stop="5311"/>
            <exon e_start="4802" e_stop="4691"/>
            <exon e_start="4575" e_stop="4273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.996"/>
          <exon-intron don_prob="0.879" acc_prob="0.053" e_score="1.000"/>
          <exon-intron don_prob="0.407" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.846" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="0.992"/>
          <exon-intron don_prob="0.715" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="9990" e_stop="9526" e_length="465"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="9525" i_stop="7506" i_length="2020"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7505" e_stop="7458" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.879" acc_prob="0.053">
            <gDNA_intron_boundary i_start="7457" i_stop="7271" i_length="187"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7270" e_stop="7094" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="0.407" acc_prob="0.977">
            <gDNA_intron_boundary i_start="7093" i_stop="7000" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6999" e_stop="6849" e_length="151"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="0.982">
            <gDNA_intron_boundary i_start="6848" i_stop="6740" i_length="109"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6739" e_stop="6653" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.846" acc_prob="0.977">
            <gDNA_intron_boundary i_start="6652" i_stop="6543" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6542" e_stop="6418" e_length="125"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6417" i_stop="5430" i_length="988"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="5429" e_stop="5311" e_length="119"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="5310" i_stop="4803" i_length="508"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4802" e_stop="4691" e_length="112"/>
          </exon>
          <intron i_serial="8" don_prob="0.715" acc_prob="0.987">
            <gDNA_intron_boundary i_start="4690" i_stop="4576" i_length="115"/>
          </intron>
          <exon e_serial="9" e_score="0.993">
            <gDNA_exon_boundary e_start="4575" e_stop="4273" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9990" stop="9526"/>
              <exon start="7505" stop="7458"/>
              <exon start="7270" stop="7094"/>
              <exon start="6999" stop="6849"/>
              <exon start="6739" stop="6653"/>
              <exon start="6542" stop="6418"/>
              <exon start="5429" stop="5311"/>
              <exon start="4802" stop="4691"/>
              <exon start="4575" stop="4273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576953" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCATCACCCTCAGCAAAATCTCAGCTGAAAAAAAAAACCCTAATCTCCATTTGATAGAATGATCCTATAACATTCAAAATTCTTCCTGCAAATCCCAAAATTCAGAATCTGAATCAAAAATTGTTGAACTGAATCAATGTCTCAAGATGGAGCAACAGCTATGGATTGGAAGAAGGATGGTCAATCAACAAACTCTACCGGAAATGGCATGGGGAATTGTGTTCGGAATGGATCAAACGGTGTTGTTTACCCACCGTACGCTTCTCACCGGCTGCGATTGAACCCTAGTGTTGATCACAAACCGGATAACTATGATGACCTTCAATTGGATTTCAGTCCGTTGTTGTTTAGTTCCCTTGAACGTTATCTTCCGCCTGCTCTTCTCAACTCATCACGTGACCAGAAGGTTCATTTCATGCGTGAAATTCTCCTCCGTTACTTTCCTGAAGGCGAACGCACTCGT : GTCCAGAAGCATAGAGAATACAGACAGAAGATTATATCAAACTATCAG : CCTCTACACAGGGAATTATATACGATGCATGCTCAAAATTTCTTTGTGCCATCATTTCTCAAGGCAATTAGTGAGAACTCAGAGGAAAGTTTCAGGAACATAATGTCTGAACCCTCTCCTGGAGTTTTTACGTTCGAAATGCTTCAACCACGATTTTGTGAGATGTTGTTGGCTGAG : GTAGAAAACTTTGAGAGGTGGGTCCGTGAGACGAAATTCAGAATAATGCGTCCCAATACGATGAACAGATTTGGTGCCGTTCTTGATGACTTTGGCCTTGACGCCATGCTGGAGAAGTTGATGGAAGATTTCATTCGTCCCATTTCGAGAG : TTTTCTTTACTGAAGTTGGTGGATCCACACTTGATTCCCATCATGGCTTTGTTGTTGAGTATGGAATGGACAGAGATGTTGACTTGG : GTTTCCATGTCGATGATTCAGAAGTGACTTTAAATGTGTGCTTGGGTAAGCAATTCTCGGGTGGAGAGCTGTTCTTCCGTGGAGTGCGGTGTGAGAAGCATGTGAATGTTGAAACACAACCAGAG : GAGATCTTCGATTATGCCCATACCGTGGGGCGTGCAGTGCTGCATCGTGGTCGTCATCGCCATGGTGCTAGGGCAACAACATCAGGGCAGAGGATCAACTTGTTGTTGTGGTGCAGAAG : TTCTGTCTTTAGGGAGATAAGGAAGCACCAGAAGGACACCTCCAGCTGGTGTGCAGAGTGCCAGCGCAATAAGAAGGAAAGGCAACGGCAGGCTGTTGCTGCTACTAAATTG : GAGCTGCTGAAAAGAGGATCGTCTGCTATATAACTATGCGTACTGTTTTACTTTTATATATCCTCTTCTCGACTTTGCCCCCATGTAATATATAGCTGAAACCCTCATATTCAAGGCAGATGCACTTTCTTGTTCGATATAATATTAAAGGGTGTTGTTCGTGTTACTGAAATAGCTATACATGTAAATCGAGTAGGTACCTCCTATTTGTGTAACTGAGATGGTATCAGTACAAAAGGAGCGATCTTGTAAACAGTGTTTCGCAGTCATGTTTGTTAATGGAGGCAATTTCTTTCTCAGGAT</gDNA_template>
            <first_frame> L  H  H  P  Q  Q  N  L  S  *  K  K  K  P  *  S  P  F  D  R  M  I  L  *  H  S  K  F  F  L  Q  I  P  K  F  R  I  *  I  K  N  C  *  T  E  S  M  S  Q  D  G  A  T  A  M  D  W  K  K  D  G  Q  S  T  N  S  T  G  N  G  M  G  N  C  V  R  N  G  S  N  G  V  V  Y  P  P  Y  A  S  H  R  L  R  L  N  P  S  V  D  H  K  P  D  N  Y  D  D  L  Q  L  D  F  S  P  L  L  F  S  S  L  E  R  Y  L  P  P  A  L  L  N  S  S  R  D  Q  K  V  H  F  M  R  E  I  L  L  R  Y  F  P  E  G  E  R  T  R  :  V  Q  K  H  R  E  Y  R  Q  K  I  I  S  N  Y  Q  :  P  L  H  R  E  L  Y  T  M  H  A  Q  N  F  F  V  P  S  F  L  K  A  I  S  E  N  S  E  E  S  F  R  N  I  M  S  E  P  S  P  G  V  F  T  F  E  M  L  Q  P  R  F  C  E  M  L  L  A  E  :  V  E  N  F  E  R  W  V  R  E  T  K  F  R  I  M  R  P  N  T  M  N  R  F  G  A  V  L  D  D  F  G  L  D  A  M  L  E  K  L  M  E  D  F  I  R  P  I  S  R   : V  F  F  T  E  V  G  G  S  T  L  D  S  H  H  G  F  V  V  E  Y  G  M  D  R  D  V  D  L   : G  F  H  V  D  D  S  E  V  T  L  N  V  C  L  G  K  Q  F  S  G  G  E  L  F  F  R  G  V  R  C  E  K  H  V  N  V  E  T  Q  P  E  :  E  I  F  D  Y  A  H  T  V  G  R  A  V  L  H  R  G  R  H  R  H  G  A  R  A  T  T  S  G  Q  R  I  N  L  L  L  W  C  R  S :   S  V  F  R  E  I  R  K  H  Q  K  D  T  S  S  W  C  A  E  C  Q  R  N  K  K  E  R  Q  R  Q  A  V  A  A  T  K  L  :  E  L  L  K  R  G  S  S  A  I  *  L  C  V  L  F  Y  F  Y  I  S  S  S  R  L  C  P  H  V  I  Y  S  *  N  P  H  I  Q  G  R  C  T  F  L  F  D  I  I  L  K  G  V  V  R  V  T  E  I  A  I  H  V  N  R  V  G  T  S  Y  L  C  N  *  D  G  I  S  T  K  G  A  I  L  *  T  V  F  R  S  H  V  C  *  W  R  Q  F  L  S  Q  D </first_frame>
            <second_frame>  F  I  T  L  S  K  I  S  A  E  K  K  N  P  N  L  H  L  I  E  *  S  Y  N  I  Q  N  S  S  C  K  S  Q  N  S  E  S  E  S  K  I  V  E  L  N  Q  C  L  K  M  E  Q  Q  L  W  I  G  R  R  M  V  N  Q  Q  T  L  P  E  M  A  W  G  I  V  F  G  M  D  Q  T  V  L  F  T  H  R  T  L  L  T  G  C  D  *  T  L  V  L  I  T  N  R  I  T  M  M  T  F  N  W  I  S  V  R  C  C  L  V  P  L  N  V  I  F  R  L  L  F  S  T  H  H  V  T  R  R  F  I  S  C  V  K  F  S  S  V  T  F  L  K  A  N  A  L  V :   S  R  S  I  E  N  T  D  R  R  L  Y  Q  T  I  S :   L  Y  T  G  N  Y  I  R  C  M  L  K  I  S  L  C  H  H  F  S  R  Q  L  V  R  T  Q  R  K  V  S  G  T  *  C  L  N  P  L  L  E  F  L  R  S  K  C  F  N  H  D  F  V  R  C  C  W  L  R :   *  K  T  L  R  G  G  S  V  R  R  N  S  E  *  C  V  P  I  R  *  T  D  L  V  P  F  L  M  T  L  A  L  T  P  C  W  R  S  *  W  K  I  S  F  V  P  F  R  E  :  F  S  L  L  K  L  V  D  P  H  L  I  P  I  M  A  L  L  L  S  M  E  W  T  E  M  L  T  W  :  V  S  M  S  M  I  Q  K  *  L  *  M  C  A  W  V  S  N  S  R  V  E  S  C  S  S  V  E  C  G  V  R  S  M  *  M  L  K  H  N  Q  R :   R  S  S  I  M  P  I  P  W  G  V  Q  C  C  I  V  V  V  I  A  M  V  L  G  Q  Q  H  Q  G  R  G  S  T  C  C  C  G  A  E   : V  L  S  L  G  R  *  G  S  T  R  R  T  P  P  A  G  V  Q  S  A  S  A  I  R  R  K  G  N  G  R  L  L  L  L  L  N  W :   S  C  *  K  E  D  R  L  L  Y  N  Y  A  Y  C  F  T  F  I  Y  P  L  L  D  F  A  P  M  *  Y  I  A  E  T  L  I  F  K  A  D  A  L  S  C  S  I  *  Y  *  R  V  L  F  V  L  L  K  *  L  Y  M  *  I  E  *  V  P  P  I  C  V  T  E  M  V  S  V  Q  K  E  R  S  C  K  Q  C  F  A  V  M  F  V  N  G  G  N  F  F  L  R   </second_frame>
            <third_frame>   S  S  P  S  A  K  S  Q  L  K  K  K  T  L  I  S  I  *  *  N  D  P  I  T  F  K  I  L  P  A  N  P  K  I  Q  N  L  N  Q  K  L  L  N  *  I  N  V  S  R  W  S  N  S  Y  G  L  E  E  G  W  S  I  N  K  L  Y  R  K  W  H  G  E  L  C  S  E  W  I  K  R  C  C  L  P  T  V  R  F  S  P  A  A  I  E  P  *  C  *  S  Q  T  G  *  L  *  *  P  S  I  G  F  Q  S  V  V  V  *  F  P  *  T  L  S  S  A  C  S  S  Q  L  I  T  *  P  E  G  S  F  H  A  *  N  S  P  P  L  L  S  *  R  R  T  H  S   : C  P  E  A  *  R  I  Q  T  E  D  Y  I  K  L  S   : A  S  T  Q  G  I  I  Y  D  A  C  S  K  F  L  C  A  I  I  S  Q  G  N  *  *  E  L  R  G  K  F  Q  E  H  N  V  *  T  L  S  W  S  F  Y  V  R  N  A  S  T  T  I  L  *  D  V  V  G  *   : G  R  K  L  *  E  V  G  P  *  D  E  I  Q  N  N  A  S  Q  Y  D  E  Q  I  W  C  R  S  *  *  L  W  P  *  R  H  A  G  E  V  D  G  R  F  H  S  S  H  F  E  S :   F  L  Y  *  S  W  W  I  H  T  *  F  P  S  W  L  C  C  *  V  W  N  G  Q  R  C  *  L  G :   F  P  C  R  *  F  R  S  D  F  K  C  V  L  G  *  A  I  L  G  W  R  A  V  L  P  W  S  A  V  *  E  A  C  E  C  *  N  T  T  R   : G  D  L  R  L  C  P  Y  R  G  A  C  S  A  A  S  W  S  S  S  P  W  C  *  G  N  N  I  R  A  E  D  Q  L  V  V  V  V  Q  K  :  F  C  L  *  G  D  K  E  A  P  E  G  H  L  Q  L  V  C  R  V  P  A  Q  *  E  G  K  A  T  A  G  C  C  C  Y  *  I   : G  A  A  E  K  R  I  V  C  Y  I  T  M  R  T  V  L  L  L  Y  I  L  F  S  T  L  P  P  C  N  I  *  L  K  P  S  Y  S  R  Q  M  H  F  L  V  R  Y  N  I  K  G  C  C  S  C  Y  *  N  S  Y  T  C  K  S  S  R  Y  L  L  F  V  *  L  R  W  Y  Q  Y  K  R  S  D  L  V  N  S  V  S  Q  S  C  L  L  M  E  A  I  S  F  S  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0244P17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9861" stop="9526"/>
                    <exon start="7505" stop="7458"/>
                    <exon start="7270" stop="7094"/>
                    <exon start="6999" stop="6849"/>
                    <exon start="6739" stop="6653"/>
                    <exon start="6542" stop="6418"/>
                    <exon start="5429" stop="5311"/>
                    <exon start="4802" stop="4691"/>
                    <exon start="4575" stop="4543"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1185</number_coding_nucleotides>
                  <number_encoded_amino_acids>395</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TESMSQDGATAMDWKKDGQSTNSTGNGMGNCVRNGSNGVVYPPYASHRLRLNPSVDHKPDNYDDLQLDFSPLLFSSLERYLPPALLNSSRDQKVHFMREILLRYFPEGERTRVQKHREYRQKIISNYQPLHRELYTMHAQNFFVPSFLKAISENSEESFRNIMSEPSPGVFTFEMLQPRFCEMLLAEVENFERWVRETKFRIMRPNTMNRFGAVLDDFGLDAMLEKLMEDFIRPISRVFFTEVGGSTLDSHHGFVVEYGMDRDVDLGFHVDDSEVTLNVCLGKQFSGGELFFRGVRCEKHVNVETQPEEIFDYAHTVGRAVLHRGRHRHGARATTSGQRINLLLWCRSSVFREIRKHQKDTSSWCAECQRNKKERQRQAVAATKLELLKRGSSAI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="12029" PGL_stop="12637"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12029" e_stop="12637"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="12029" e_stop="12637" e_length="609"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12029" stop="12637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604531" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTAATTTACTGAATTTTGAAAGTTTGCTGCTGTTGGTTCAGTAGGTTGATGGAAGTTTAAGAGGTTTGCTTTTTGGTCAGAATTGTTGTGTTGGTATTGTTTATAGTGATGCTGATAAAGTTGGCTGTAGTTATAAACAGCTAAAACAGCTACATGGTTCATTCTAATTTTACAACAACTACAACATGTTAACATACCAGTGTAGTCCTGCAAGTGGGGCATGGGGAGGGTAGTGTGTACAGTGACCTTACCCCCTAATTTAAGAAGGACTTCAAAATCTTAAATTTAGGTTGATGACTTGAAAATTTGTTTCCCAGAGCTACATGAAAGTGATATCTCTCCCAGGCACACACACTTCATTTGTTTGCATGTTTTCTGATTGGATTTAATATCTTGGATTCGCTGGATTAGGAAAATGTTTAGTTGGTAAACTTTGTTTTTATATGTTGATGTTGATATGTTCAGCTGTATCTATAAATTGGTTCTCTTGCATGAAGTAACAACTACATTGTATCCACCCGCTTATAACTCACCTTTGCTTAACATTCTTGTAAACTTGGAGAATGCAGGGTAAAAGATGTTCTGCAAAATGTAATAATGCTGAACAT</gDNA_template>
            <first_frame> A  N  L  L  N  F  E  S  L  L  L  L  V  Q  *  V  D  G  S  L  R  G  L  L  F  G  Q  N  C  C  V  G  I  V  Y  S  D  A  D  K  V  G  C  S  Y  K  Q  L  K  Q  L  H  G  S  F  *  F  Y  N  N  Y  N  M  L  T  Y  Q  C  S  P  A  S  G  A  W  G  G  *  C  V  Q  *  P  Y  P  L  I  *  E  G  L  Q  N  L  K  F  R  L  M  T  *  K  F  V  S  Q  S  Y  M  K  V  I  S  L  P  G  T  H  T  S  F  V  C  M  F  S  D  W  I  *  Y  L  G  F  A  G  L  G  K  C  L  V  G  K  L  C  F  Y  M  L  M  L  I  C  S  A  V  S  I  N  W  F  S  C  M  K  *  Q  L  H  C  I  H  P  L  I  T  H  L  C  L  T  F  L  *  T  W  R  M  Q  G  K  R  C  S  A  K  C  N  N  A  E  H </first_frame>
            <second_frame>  L  I  Y  *  I  L  K  V  C  C  C  W  F  S  R  L  M  E  V  *  E  V  C  F  L  V  R  I  V  V  L  V  L  F  I  V  M  L  I  K  L  A  V  V  I  N  S  *  N  S  Y  M  V  H  S  N  F  T  T  T  T  T  C  *  H  T  S  V  V  L  Q  V  G  H  G  E  G  S  V  Y  S  D  L  T  P  *  F  K  K  D  F  K  I  L  N  L  G  *  *  L  E  N  L  F  P  R  A  T  *  K  *  Y  L  S  Q  A  H  T  L  H  L  F  A  C  F  L  I  G  F  N  I  L  D  S  L  D  *  E  N  V  *  L  V  N  F  V  F  I  C  *  C  *  Y  V  Q  L  Y  L  *  I  G  S  L  A  *  S  N  N  Y  I  V  S  T  R  L  *  L  T  F  A  *  H  S  C  K  L  G  E  C  R  V  K  D  V  L  Q  N  V  I  M  L  N   </second_frame>
            <third_frame>   *  F  T  E  F  *  K  F  A  A  V  G  S  V  G  *  W  K  F  K  R  F  A  F  W  S  E  L  L  C  W  Y  C  L  *  *  C  *  *  S  W  L  *  L  *  T  A  K  T  A  T  W  F  I  L  I  L  Q  Q  L  Q  H  V  N  I  P  V  *  S  C  K  W  G  M  G  R  V  V  C  T  V  T  L  P  P  N  L  R  R  T  S  K  S  *  I  *  V  D  D  L  K  I  C  F  P  E  L  H  E  S  D  I  S  P  R  H  T  H  F  I  C  L  H  V  F  *  L  D  L  I  S  W  I  R  W  I  R  K  M  F  S  W  *  T  L  F  L  Y  V  D  V  D  M  F  S  C  I  Y  K  L  V  L  L  H  E  V  T  T  T  L  Y  P  P  A  Y  N  S  P  L  L  N  I  L  V  N  L  E  N  A  G  *  K  M  F  C  K  M  *  *  C  *  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0244P17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="18829" PGL_stop="14790"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18829" e_stop="17831"/>
            <exon e_start="15144" e_stop="14790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="0.999"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="18829" e_stop="17831" e_length="999"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="17830" i_stop="15145" i_length="2686"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="15144" e_stop="14790" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18829" stop="17831"/>
              <exon start="15144" stop="14790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573657" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATAGTTTACCAAGAAAAAAAGAAAAGAAAAGAAAAGGAAGTAGTCTTTATACTTTGCCTCTCCCTCTAAAAATTTAATTTGCAATGGCGACCCTAATGTATCACATGTTTTCATCGTCTTCACTGTTATCTCTGGGATTCTACCACCTCATCTGCACCACCCGGAACCGCCTCAAATCCGCCGGAGACTACGTCGCCAAACCCTACCACCCTCTCTCCTTCATATCTCAACCGCATCTCCGCCGTCTACCTCTTTATCTCCTCCTTCTCTGCCTCCTCATTTCTCTGATCCATCAATCACTCGTCTCTTTGGATGCCGATCCTCTCCTCAAAGGTCATACTCCGGTGCATCGTTTCACCTCTCTCCAAGCCGCTGCTGTTGTTTTCTCGTTTCTAATACTCGTTGTTTTTCTCCTTATCTCTGAGTCAACTTCTCTTCTCCCGCTTCCTCCCGATCTGTTCTTCGCTTTAGCTGCTGCACTTTTCTACCTACAGTATTCGGTATCCGATTCTTCTGCTTCTGTTCAAACCTCCGATCTCCAGGCTAAATGTGATTCCGTTTCAGCTCGCATTTCTGCACTCTCCGCGTTACTTTGTCTCGTGATTGCTGTTCAACCTAGGCTTTTTCTGGCTGATGTTGCGTTAGCTGCTTCTATCTGTCTCCAGGGATTATGGGTTCTACAGACGGGACTTTCGCTTTATGTTGATGCGTTCATACCTGAGGGTTGTCATAAGTTGTTGGATGTTGTTACTGGGGTAGAAGGCTCAACCAAATGCGATTTGGAGGACTCTAAGCTCAGGGCTATTGCTATACTTGATTTGGCTTTTGTAGTTCATGTGATGTTTGTATTGCTCATTGTTAGTGTCACTTATGCTGCCGTTGCTAAAACTATTGGTATCAGGAGATTTGGTTCTTATGAGGCTCTTTCCAATGCTGACTCGAGTCATATCCAAATGAAGGCTATGACGGGAACTCAAGCTTGATTATCGTCGCATTAG : GTTATAGGAAGGGGGCGGCATTACATTCAGATTAGTCCATCATTCTCAGCTGTCATATCTCAATCAAGAAAAACAACAATCTAAAAACGAGCTAAGCCCGCCAAGAAGGCTTCCCAAAGCAGATATATATAGCTAAGTTCGGTTTTGTTTTTGCAGAGTTCAATCTTGTTGATGGAGTAGAGGCAGTTTCTTTTGTATGGACCCAATACTTTACATTAGACTGTATTTTTATTTGGACAAATGTTGTATGAAATGTCAAAGGGGGTATAATACACACTGGTTAACCACAATATGGTTTAAATATTTGTAATTTAAAGTTCAGCCATGGTTGCTGTACCAAATGAAGTATCCCCAT</gDNA_template>
            <first_frame> H  S  L  P  R  K  K  E  K  K  R  K  G  S  S  L  Y  T  L  P  L  P  L  K  I  *  F  A  M  A  T  L  M  Y  H  M  F  S  S  S  S  L  L  S  L  G  F  Y  H  L  I  C  T  T  R  N  R  L  K  S  A  G  D  Y  V  A  K  P  Y  H  P  L  S  F  I  S  Q  P  H  L  R  R  L  P  L  Y  L  L  L  L  C  L  L  I  S  L  I  H  Q  S  L  V  S  L  D  A  D  P  L  L  K  G  H  T  P  V  H  R  F  T  S  L  Q  A  A  A  V  V  F  S  F  L  I  L  V  V  F  L  L  I  S  E  S  T  S  L  L  P  L  P  P  D  L  F  F  A  L  A  A  A  L  F  Y  L  Q  Y  S  V  S  D  S  S  A  S  V  Q  T  S  D  L  Q  A  K  C  D  S  V  S  A  R  I  S  A  L  S  A  L  L  C  L  V  I  A  V  Q  P  R  L  F  L  A  D  V  A  L  A  A  S  I  C  L  Q  G  L  W  V  L  Q  T  G  L  S  L  Y  V  D  A  F  I  P  E  G  C  H  K  L  L  D  V  V  T  G  V  E  G  S  T  K  C  D  L  E  D  S  K  L  R  A  I  A  I  L  D  L  A  F  V  V  H  V  M  F  V  L  L  I  V  S  V  T  Y  A  A  V  A  K  T  I  G  I  R  R  F  G  S  Y  E  A  L  S  N  A  D  S  S  H  I  Q  M  K  A  M  T  G  T  Q  A  *  L  S  S  H  *  :  V  I  G  R  G  R  H  Y  I  Q  I  S  P  S  F  S  A  V  I  S  Q  S  R  K  T  T  I  *  K  R  A  K  P  A  K  K  A  S  Q  S  R  Y  I  *  L  S  S  V  L  F  L  Q  S  S  I  L  L  M  E  *  R  Q  F  L  L  Y  G  P  N  T  L  H  *  T  V  F  L  F  G  Q  M  L  Y  E  M  S  K  G  V  *  Y  T  L  V  N  H  N  M  V  *  I  F  V  I  *  S  S  A  M  V  A  V  P  N  E  V  S  P  </first_frame>
            <second_frame>  I  V  Y  Q  E  K  K  K  R  K  E  K  E  V  V  F  I  L  C  L  S  L  *  K  F  N  L  Q  W  R  P  *  C  I  T  C  F  H  R  L  H  C  Y  L  W  D  S  T  T  S  S  A  P  P  G  T  A  S  N  P  P  E  T  T  S  P  N  P  T  T  L  S  P  S  Y  L  N  R  I  S  A  V  Y  L  F  I  S  S  F  S  A  S  S  F  L  *  S  I  N  H  S  S  L  W  M  P  I  L  S  S  K  V  I  L  R  C  I  V  S  P  L  S  K  P  L  L  L  F  S  R  F  *  Y  S  L  F  F  S  L  S  L  S  Q  L  L  F  S  R  F  L  P  I  C  S  S  L  *  L  L  H  F  S  T  Y  S  I  R  Y  P  I  L  L  L  L  F  K  P  P  I  S  R  L  N  V  I  P  F  Q  L  A  F  L  H  S  P  R  Y  F  V  S  *  L  L  F  N  L  G  F  F  W  L  M  L  R  *  L  L  L  S  V  S  R  D  Y  G  F  Y  R  R  D  F  R  F  M  L  M  R  S  Y  L  R  V  V  I  S  C  W  M  L  L  L  G  *  K  A  Q  P  N  A  I  W  R  T  L  S  S  G  L  L  L  Y  L  I  W  L  L  *  F  M  *  C  L  Y  C  S  L  L  V  S  L  M  L  P  L  L  K  L  L  V  S  G  D  L  V  L  M  R  L  F  P  M  L  T  R  V  I  S  K  *  R  L  *  R  E  L  K  L  D  Y  R  R  I  R :   L  *  E  G  G  G  I  T  F  R  L  V  H  H  S  Q  L  S  Y  L  N  Q  E  K  Q  Q  S  K  N  E  L  S  P  P  R  R  L  P  K  A  D  I  Y  S  *  V  R  F  C  F  C  R  V  Q  S  C  *  W  S  R  G  S  F  F  C  M  D  P  I  L  Y  I  R  L  Y  F  Y  L  D  K  C  C  M  K  C  Q  R  G  Y  N  T  H  W  L  T  T  I  W  F  K  Y  L  *  F  K  V  Q  P  W  L  L  Y  Q  M  K  Y  P  H </second_frame>
            <third_frame>   *  F  T  K  K  K  R  K  E  K  K  R  K  *  S  L  Y  F  A  S  P  S  K  N  L  I  C  N  G  D  P  N  V  S  H  V  F  I  V  F  T  V  I  S  G  I  L  P  P  H  L  H  H  P  E  P  P  Q  I  R  R  R  L  R  R  Q  T  L  P  P  S  L  L  H  I  S  T  A  S  P  P  S  T  S  L  S  P  P  S  L  P  P  H  F  S  D  P  S  I  T  R  L  F  G  C  R  S  S  P  Q  R  S  Y  S  G  A  S  F  H  L  S  P  S  R  C  C  C  F  L  V  S  N  T  R  C  F  S  P  Y  L  *  V  N  F  S  S  P  A  S  S  R  S  V  L  R  F  S  C  C  T  F  L  P  T  V  F  G  I  R  F  F  C  F  C  S  N  L  R  S  P  G  *  M  *  F  R  F  S  S  H  F  C  T  L  R  V  T  L  S  R  D  C  C  S  T  *  A  F  S  G  *  C  C  V  S  C  F  Y  L  S  P  G  I  M  G  S  T  D  G  T  F  A  L  C  *  C  V  H  T  *  G  L  S  *  V  V  G  C  C  Y  W  G  R  R  L  N  Q  M  R  F  G  G  L  *  A  Q  G  Y  C  Y  T  *  F  G  F  C  S  S  C  D  V  C  I  A  H  C  *  C  H  L  C  C  R  C  *  N  Y  W  Y  Q  E  I  W  F  L  *  G  S  F  Q  C  *  L  E  S  Y  P  N  E  G  Y  D  G  N  S  S  L  I  I  V  A  L   : G  Y  R  K  G  A  A  L  H  S  D  *  S  I  I  L  S  C  H  I  S  I  K  K  N  N  N  L  K  T  S  *  A  R  Q  E  G  F  P  K  Q  I  Y  I  A  K  F  G  F  V  F  A  E  F  N  L  V  D  G  V  E  A  V  S  F  V  W  T  Q  Y  F  T  L  D  C  I  F  I  W  T  N  V  V  *  N  V  K  G  G  I  I  H  T  G  *  P  Q  Y  G  L  N  I  C  N  L  K  F  S  H  G  C  C  T  K  *  S  I  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0244P17.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18751" stop="17846"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FAMATLMYHMFSSSSLLSLGFYHLICTTRNRLKSAGDYVAKPYHPLSFISQPHLRRLPLYLLLLCLLISLIHQSLVSLDADPLLKGHTPVHRFTSLQAAAVVFSFLILVVFLLISESTSLLPLPPDLFFALAAALFYLQYSVSDSSASVQTSDLQAKCDSVSARISALSALLCLVIAVQPRLFLADVALAASICLQGLWVLQTGLSLYVDAFIPEGCHKLLDVVTGVEGSTKCDLEDSKLRAIAILDLAFVVHVMFVLLIVSVTYAAVAKTIGIRRFGSYEALSNADSSHIQMKAMTGTQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="31564" PGL_stop="34623"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31564" e_stop="32293"/>
            <exon e_start="33795" e_stop="33874"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31564" e_stop="32293" e_length="730"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32294" i_stop="33794" i_length="1501"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="33795" e_stop="33874" e_length="80"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31564" stop="32293"/>
              <exon start="33795" stop="33874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570944" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAAAAGAAAAACCGAACTCTCTCTCTCTACTTTCTCCTCTTCTTCTTCCTCTTTCTCTCTCTAAAACTCACTCGCCGCCGTGTGAACTTTCAGTTACCACCGTTTTCTTCTCTCAAAAGAGGCAAAAAGAAGTTCAAATTTTCATTTTCTTTTTTCTCCAAAAAAATCTATCTTTTTTGTCTACTTTTTAAACTCTCTTTTTGCTTTTGTGTTGAAATCTCCATGAATTTGCTCTGTTTTAGTTAAACAGTTGAATATCTACAATACCCATTTCTCCATTTTTGAATTCATTGTTTTTTCCTCCAAAAATTCGATCTTTTTTTTTCTTTTCTTTTGTGTTCATTCTAATCTCCATGAATTTGCTCTGTTTTAGTTAAACTGTTAATTATCTACAATACCCATTTCTCCATTTTTGAAAATTCGATCTTTTTATGCTTTTATGTTCATTCAAATCTTCATGAATTTGCTCTGTTTTAGTAAACAGCTACAATACCCATTTCTCCATTTTTGAAAAATTTGATCTTTTTTTGCTTCTGTGTTTATTGAAATCTCTATAAATTTGCTCTGTTTTTGCTAAATAGTTGATTATCTACATTACCCATTTCTCCATTTTCGAAGATTTATTCATTTTTTTTATCCAACGGCCAGGATTCGTTGTTCTCTGTTACTACTAGGTCTCTCTCTGTGATTGTCAGCTTTTTAATTTTAGTTCTTTTGTCTTCTCTAC : CGAAAAGGCGGAAGAGTTTGAATTCTTATAGGCTAGGGCTATGGAGCCTAATGGACATAGAAAGGGTAACAAAAAGAATA</gDNA_template>
            <first_frame> E  K  K  K  N  R  T  L  S  L  Y  F  L  L  F  F  F  L  F  L  S  L  K  L  T  R  R  R  V  N  F  Q  L  P  P  F  S  S  L  K  R  G  K  K  K  F  K  F  S  F  S  F  F  S  K  K  I  Y  L  F  C  L  L  F  K  L  S  F  C  F  C  V  E  I  S  M  N  L  L  C  F  S  *  T  V  E  Y  L  Q  Y  P  F  L  H  F  *  I  H  C  F  F  L  Q  K  F  D  L  F  F  S  F  L  L  C  S  F  *  S  P  *  I  C  S  V  L  V  K  L  L  I  I  Y  N  T  H  F  S  I  F  E  N  S  I  F  L  C  F  Y  V  H  S  N  L  H  E  F  A  L  F  *  *  T  A  T  I  P  I  S  P  F  L  K  N  L  I  F  F  C  F  C  V  Y  *  N  L  Y  K  F  A  L  F  L  L  N  S  *  L  S  T  L  P  I  S  P  F  S  K  I  Y  S  F  F  L  S  N  G  Q  D  S  L  F  S  V  T  T  R  S  L  S  V  I  V  S  F  L  I  L  V  L  L  S  S  L   : P  K  R  R  K  S  L  N  S  Y  R  L  G  L  W  S  L  M  D  I  E  R  V  T  K  R  I </first_frame>
            <second_frame>  K  K  R  K  T  E  L  S  L  S  T  F  S  S  S  S  S  S  F  S  L  *  N  S  L  A  A  V  *  T  F  S  Y  H  R  F  L  L  S  K  E  A  K  R  S  S  N  F  H  F  L  F  S  P  K  K  S  I  F  F  V  Y  F  L  N  S  L  F  A  F  V  L  K  S  P  *  I  C  S  V  L  V  K  Q  L  N  I  Y  N  T  H  F  S  I  F  E  F  I  V  F  S  S  K  N  S  I  F  F  F  L  F  F  C  V  H  S  N  L  H  E  F  A  L  F  *  L  N  C  *  L  S  T  I  P  I  S  P  F  L  K  I  R  S  F  Y  A  F  M  F  I  Q  I  F  M  N  L  L  C  F  S  K  Q  L  Q  Y  P  F  L  H  F  *  K  I  *  S  F  F  A  S  V  F  I  E  I  S  I  N  L  L  C  F  C  *  I  V  D  Y  L  H  Y  P  F  L  H  F  R  R  F  I  H  F  F  Y  P  T  A  R  I  R  C  S  L  L  L  L  G  L  S  L  *  L  S  A  F  *  F  *  F  F  C  L  L  Y  :  R  K  G  G  R  V  *  I  L  I  G  *  G  Y  G  A  *  W  T  *  K  G  *  Q  K  E   </second_frame>
            <third_frame>   K  K  E  K  P  N  S  L  S  L  L  S  P  L  L  L  P  L  S  L  S  K  T  H  S  P  P  C  E  L  S  V  T  T  V  F  F  S  Q  K  R  Q  K  E  V  Q  I  F  I  F  F  F  L  Q  K  N  L  S  F  L  S  T  F  *  T  L  F  L  L  L  C  *  N  L  H  E  F  A  L  F  *  L  N  S  *  I  S  T  I  P  I  S  P  F  L  N  S  L  F  F  P  P  K  I  R  S  F  F  F  F  S  F  V  F  I  L  I  S  M  N  L  L  C  F  S  *  T  V  N  Y  L  Q  Y  P  F  L  H  F  *  K  F  D  L  F  M  L  L  C  S  F  K  S  S  *  I  C  S  V  L  V  N  S  Y  N  T  H  F  S  I  F  E  K  F  D  L  F  L  L  L  C  L  L  K  S  L  *  I  C  S  V  F  A  K  *  L  I  I  Y  I  T  H  F  S  I  F  E  D  L  F  I  F  F  I  Q  R  P  G  F  V  V  L  C  Y  Y  *  V  S  L  C  D  C  Q  L  F  N  F  S  S  F  V  F  S  T :   E  K  A  E  E  F  E  F  L  *  A  R  A  M  E  P  N  G  H  R  K  G  N  K  K  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0244P17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31564" stop="31812"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKKKNRTLSLYFLLFFFLFLSLKLTRRRVNFQLPPFSSLKRGKKKFKFSFSFFSKKIYLFCLLFKLSFCFCVEISMNLLCFS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0244P17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32152" stop="32293"/>
                    <exon start="33795" stop="33874"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSTLPISPFSKIYSFFLSNGQDSLFSVTTRSLSVIVSFLILVLLSSLPKRRKSLNSYRLGLWSLMDIERVTKRI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33999" e_stop="34103"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="33999" e_stop="34103" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33999" stop="34103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600570" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAGTTTTTTAATGTACATGCTCTATATTCAGAGGTAAAATAATTGCTATGGACAGGAATAGTTGTTCTCTTCTTGGAGTACGGGGGTATTTTTTTTTTTTGGA</gDNA_template>
            <first_frame> V  S  F  L  M  Y  M  L  Y  I  Q  R  *  N  N  C  Y  G  Q  E  *  L  F  S  S  W  S  T  G  V  F  F  F  F  G </first_frame>
            <second_frame>  *  V  F  *  C  T  C  S  I  F  R  G  K  I  I  A  M  D  R  N  S  C  S  L  L  G  V  R  G  Y  F  F  F  L   </second_frame>
            <third_frame>   K  F  F  N  V  H  A  L  Y  S  E  V  K  *  L  L  W  T  G  I  V  V  L  F  L  E  Y  G  G  I  F  F  F  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0244P17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="33258" e_stop="33998"/>
            <exon e_start="34558" e_stop="34623"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.875" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33258" e_stop="33998" e_length="741"/>
          </exon>
          <intron i_serial="1" don_prob="0.875" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33999" i_stop="34557" i_length="559"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="34558" e_stop="34623" e_length="66"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33258" stop="33998"/>
              <exon start="34558" stop="34623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTATGTATCTTTTAAGATTAGTTTTAATAGCGAGCTAAAACCTTGAACGAGTAAGAGCTACCCGTTGGTAATTTCCCTTTTCTTTTGGGGGAGGTGACAGATTTCAAGTATATTCTTTACTGAGGGTCTGTAGATTAAAATGTTGAGCAGACATGAGATTATTTGGATCCCTTTCTTTACTTATTTCTTGGATTCCTATCTTTACTTTGAATTTTCCTTTAGATCATGTTTCCTTTTAGTTTACTATTCTCAAAAAAAGGATTGTGTTTGCTTTTCCTACATTTCCTGTTTCCATAGGAAGTCTACTTACTCTTTAGGATATGCAGTAATGATTAAGTTATTATAAGTTTGTTGTATTTCTGAAGGTACCTTTGAAAAAATATATCGTCATTTGTATGTCATATAGTAGCTTGAGCCCAATAGGGAACATCCTGCTATGATTTTTTAATGGCCTCTTTGAAATATTTTCATTATTTTACACGCCTAGAATCACTATGTATTGGTAGTTGAAGTTACATTTATCTTGTTTCTGCAGCGAAAAGGCGGAAGAGTTTGAATTCTTATAGGCTAGGGCTATGGAGCCTAATGGACATAGAAAGGGTAACAAAAAGAATACGGTTTCCCTTCAAAACGGTGATCTTAGCACATTGAATATTGATGATGAGTTGGATCCATGGACTTCCTGGGCGAACAAACCTCACACTATTACGTTGTTGCTTATCGGTGCATGTTTACTCAT : TTGGGCTAGTGGAGCTCTCGACTCACAAAACACTTCTTCCGGTGATATTGTGGCATCTGTGAAAAG</gDNA_template>
            <first_frame> A  Y  V  S  F  K  I  S  F  N  S  E  L  K  P  *  T  S  K  S  Y  P  L  V  I  S  L  F  F  W  G  R  *  Q  I  S  S  I  F  F  T  E  G  L  *  I  K  M  L  S  R  H  E  I  I  W  I  P  F  F  T  Y  F  L  D  S  Y  L  Y  F  E  F  S  F  R  S  C  F  L  L  V  Y  Y  S  Q  K  K  D  C  V  C  F  S  Y  I  S  C  F  H  R  K  S  T  Y  S  L  G  Y  A  V  M  I  K  L  L  *  V  C  C  I  S  E  G  T  F  E  K  I  Y  R  H  L  Y  V  I  *  *  L  E  P  N  R  E  H  P  A  M  I  F  *  W  P  L  *  N  I  F  I  I  L  H  A  *  N  H  Y  V  L  V  V  E  V  T  F  I  L  F  L  Q  R  K  G  G  R  V  *  I  L  I  G  *  G  Y  G  A  *  W  T  *  K  G  *  Q  K  E  Y  G  F  P  S  K  R  *  S  *  H  I  E  Y  *  *  *  V  G  S  M  D  F  L  G  E  Q  T  S  H  Y  Y  V  V  A  Y  R  C  M  F  T  H  :  L  G  *  W  S  S  R  L  T  K  H  F  F  R  *  Y  C  G  I  C  E  K </first_frame>
            <second_frame>  L  M  Y  L  L  R  L  V  L  I  A  S  *  N  L  E  R  V  R  A  T  R  W  *  F  P  F  S  F  G  G  G  D  R  F  Q  V  Y  S  L  L  R  V  C  R  L  K  C  *  A  D  M  R  L  F  G  S  L  S  L  L  I  S  W  I  P  I  F  T  L  N  F  P  L  D  H  V  S  F  *  F  T  I  L  K  K  R  I  V  F  A  F  P  T  F  P  V  S  I  G  S  L  L  T  L  *  D  M  Q  *  *  L  S  Y  Y  K  F  V  V  F  L  K  V  P  L  K  K  Y  I  V  I  C  M  S  Y  S  S  L  S  P  I  G  N  I  L  L  *  F  F  N  G  L  F  E  I  F  S  L  F  Y  T  P  R  I  T  M  Y  W  *  L  K  L  H  L  S  C  F  C  S  E  K  A  E  E  F  E  F  L  *  A  R  A  M  E  P  N  G  H  R  K  G  N  K  K  N  T  V  S  L  Q  N  G  D  L  S  T  L  N  I  D  D  E  L  D  P  W  T  S  W  A  N  K  P  H  T  I  T  L  L  L  I  G  A  C  L  L  I :   W  A  S  G  A  L  D  S  Q  N  T  S  S  G  D  I  V  A  S  V  K   </second_frame>
            <third_frame>   L  C  I  F  *  D  *  F  *  *  R  A  K  T  L  N  E  *  E  L  P  V  G  N  F  P  F  L  L  G  E  V  T  D  F  K  Y  I  L  Y  *  G  S  V  D  *  N  V  E  Q  T  *  D  Y  L  D  P  F  L  Y  L  F  L  G  F  L  S  L  L  *  I  F  L  *  I  M  F  P  F  S  L  L  F  S  K  K  G  L  C  L  L  F  L  H  F  L  F  P  *  E  V  Y  L  L  F  R  I  C  S  N  D  *  V  I  I  S  L  L  Y  F  *  R  Y  L  *  K  N  I  S  S  F  V  C  H  I  V  A  *  A  Q  *  G  T  S  C  Y  D  F  L  M  A  S  L  K  Y  F  H  Y  F  T  R  L  E  S  L  C  I  G  S  *  S  Y  I  Y  L  V  S  A  A  K  R  R  K  S  L  N  S  Y  R  L  G  L  W  S  L  M  D  I  E  R  V  T  K  R  I  R  F  P  F  K  T  V  I  L  A  H  *  I  L  M  M  S  W  I  H  G  L  P  G  R  T  N  L  T  L  L  R  C  C  L  S  V  H  V  Y  S   : F  G  L  V  E  L  S  T  H  K  T  L  L  P  V  I  L  W  H  L  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0244P17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33826" stop="33998"/>
                    <exon start="34558" stop="34621"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARAMEPNGHRKGNKKNTVSLQNGDLSTLNIDDELDPWTSWANKPHTITLLLIGACLLIWASGALDSQNTSSGDIVASVK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0244P17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33393" stop="33605"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKMLSRHEIIWIPFFTYFLDSYLYFEFSFRSCFLLVYYSQKKDCVCFSYISCFHRKSTYSLGYAVMIKLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="36416" PGL_stop="38571"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36416" e_stop="36460"/>
            <exon e_start="37202" e_stop="37293"/>
            <exon e_start="37489" e_stop="37742"/>
            <exon e_start="37853" e_stop="37941"/>
            <exon e_start="38141" e_stop="38571"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.826" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.783" acc_prob="0.921" e_score="0.978"/>
          <exon-intron don_prob="0.865" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.812" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36416" e_stop="36460" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.826" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36461" i_stop="37201" i_length="741"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="37202" e_stop="37293" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.783" acc_prob="0.921">
            <gDNA_intron_boundary i_start="37294" i_stop="37488" i_length="195"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37489" e_stop="37742" e_length="254"/>
          </exon>
          <intron i_serial="3" don_prob="0.865" acc_prob="0.956">
            <gDNA_intron_boundary i_start="37743" i_stop="37852" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37853" e_stop="37941" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.812">
            <gDNA_intron_boundary i_start="37942" i_stop="38140" i_length="199"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38141" e_stop="38571" e_length="431"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36416" stop="36460"/>
              <exon start="37202" stop="37293"/>
              <exon start="37489" stop="37742"/>
              <exon start="37853" stop="37941"/>
              <exon start="38141" stop="38571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584408" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTGGGACAGCATTATTCTTGACATATTGATCTGCAATTGGTTCG : GCATATGGGCTGGAATGCGCACCGTCCGGTATTTTGACGGGAAAACATACGAGTGGGTTGGCATTAGCAGGCAACCAAATATCATGGGCAAG : GTCAAGCGAACTCTTGGACAATTTACGCCAGCTCATTGGGATAAAGATGAATGGCGTCCTCTTCTAGGTCCATGGCGGTTTATTCAAGTCCTCAGTCTTTGTGTCATATTCTTGACTGTGGAGTTAAATACATTCTTTTTGAAGTTCTGTCTTTGGATTCCTCCAAGAAATCCTTTGATAGTGTATAGATTGGTTTTCTGGTGGTTAATTGCGTTACCAACAATCCGTGAATATAACTCGTATCTACAGGACAG : AAAACCAGCGAAGAAGGTAGGAGCATTTTGCTGGCTTTCAGTGGCGATCTGCATTGTTGAGCTCCTAATCTGTATCAAGTTTGGACATG : GATCATTTCCAAACCCAATGCCCAAATGGGTGGTAATTTTATGGTCATGTATCGGTACTGGCCTTTTGATGTCGTTGGCTGCATGGTCGTGGCATTTACATAGAATGATGAGGAGAAAGCACGATTGAGTTTACGTTTGCAGTTCCCCAGCCATTCTTTATTCCTTTGCTTTCATTTGGGTAGAGTTCAACCATGTTGTAAATACCCATTACCTCGCAACTGTATATGGTTTGCATTTTTTTTTAGGTTAAATCTTAGTACATTTTAAACATGTAGTGAACCTCAATTCTTTTTCAATAGGCTAAAAAGTTCTTGTTTGTTGAGCTGCAATATTGTTGCCTCAAATAAAGAGGAAGTGCTCTTTACTAGGAGCGCTCGTATGTATCATATGTGAAACTTCTGATGAAGGATGAATGAGTCGTATTCATTCT</gDNA_template>
            <first_frame> G  G  T  A  L  F  L  T  Y  *  S  A  I  G  S  :  A  Y  G  L  E  C  A  P  S  G  I  L  T  G  K  H  T  S  G  L  A  L  A  G  N  Q  I  S  W  A  R :   S  S  E  L  L  D  N  L  R  Q  L  I  G  I  K  M  N  G  V  L  F  *  V  H  G  G  L  F  K  S  S  V  F  V  S  Y  S  *  L  W  S  *  I  H  S  F  *  S  S  V  F  G  F  L  Q  E  I  L  *  *  C  I  D  W  F  S  G  G  *  L  R  Y  Q  Q  S  V  N  I  T  R  I  Y  R  T   : E  N  Q  R  R  R  *  E  H  F  A  G  F  Q  W  R  S  A  L  L  S  S  *  S  V  S  S  L  D  M  :  D  H  F  Q  T  Q  C  P  N  G  W  *  F  Y  G  H  V  S  V  L  A  F  *  C  R  W  L  H  G  R  G  I  Y  I  E  *  *  G  E  S  T  I  E  F  T  F  A  V  P  Q  P  F  F  I  P  L  L  S  F  G  *  S  S  T  M  L  *  I  P  I  T  S  Q  L  Y  M  V  C  I  F  F  *  V  K  S  *  Y  I  L  N  M  *  *  T  S  I  L  F  Q  *  A  K  K  F  L  F  V  E  L  Q  Y  C  C  L  K  *  R  G  S  A  L  Y  *  E  R  S  Y  V  S  Y  V  K  L  L  M  K  D  E  *  V  V  F  I   </first_frame>
            <second_frame>  V  G  Q  H  Y  S  *  H  I  D  L  Q  L  V  R :   H  M  G  W  N  A  H  R  P  V  F  *  R  E  N  I  R  V  G  W  H  *  Q  A  T  K  Y  H  G  Q   : G  Q  A  N  S  W  T  I  Y  A  S  S  L  G  *  R  *  M  A  S  S  S  R  S  M  A  V  Y  S  S  P  Q  S  L  C  H  I  L  D  C  G  V  K  Y  I  L  F  E  V  L  S  L  D  S  S  K  K  S  F  D  S  V  *  I  G  F  L  V  V  N  C  V  T  N  N  P  *  I  *  L  V  S  T  G  Q  :  K  T  S  E  E  G  R  S  I  L  L  A  F  S  G  D  L  H  C  *  A  P  N  L  Y  Q  V  W  T  W :   I  I  S  K  P  N  A  Q  M  G  G  N  F  M  V  M  Y  R  Y  W  P  F  D  V  V  G  C  M  V  V  A  F  T  *  N  D  E  E  K  A  R  L  S  L  R  L  Q  F  P  S  H  S  L  F  L  C  F  H  L  G  R  V  Q  P  C  C  K  Y  P  L  P  R  N  C  I  W  F  A  F  F  F  R  L  N  L  S  T  F  *  T  C  S  E  P  Q  F  F  F  N  R  L  K  S  S  C  L  L  S  C  N  I  V  A  S  N  K  E  E  V  L  F  T  R  S  A  R  M  Y  H  M  *  N  F  *  *  R  M  N  E  S  Y  S  F  </second_frame>
            <third_frame>   W  D  S  I  I  L  D  I  L  I  C  N  W  F   : G  I  W  A  G  M  R  T  V  R  Y  F  D  G  K  T  Y  E  W  V  G  I  S  R  Q  P  N  I  M  G  K  :  V  K  R  T  L  G  Q  F  T  P  A  H  W  D  K  D  E  W  R  P  L  L  G  P  W  R  F  I  Q  V  L  S  L  C  V  I  F  L  T  V  E  L  N  T  F  F  L  K  F  C  L  W  I  P  P  R  N  P  L  I  V  Y  R  L  V  F  W  W  L  I  A  L  P  T  I  R  E  Y  N  S  Y  L  Q  D  R :   K  P  A  K  K  V  G  A  F  C  W  L  S  V  A  I  C  I  V  E  L  L  I  C  I  K  F  G  H   : G  S  F  P  N  P  M  P  K  W  V  V  I  L  W  S  C  I  G  T  G  L  L  M  S  L  A  A  W  S  W  H  L  H  R  M  M  R  R  K  H  D  *  V  Y  V  C  S  S  P  A  I  L  Y  S  F  A  F  I  W  V  E  F  N  H  V  V  N  T  H  Y  L  A  T  V  Y  G  L  H  F  F  L  G  *  I  L  V  H  F  K  H  V  V  N  L  N  S  F  S  I  G  *  K  V  L  V  C  *  A  A  I  L  L  P  Q  I  K  R  K  C  S  L  L  G  A  L  V  C  I  I  C  E  T  S  D  E  G  *  M  S  R  I  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0244P17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36418" stop="36460"/>
                    <exon start="37202" stop="37293"/>
                    <exon start="37489" stop="37742"/>
                    <exon start="37853" stop="37941"/>
                    <exon start="38141" stop="38268"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WDSIILDILICNWFGIWAGMRTVRYFDGKTYEWVGISRQPNIMGKVKRTLGQFTPAHWDKDEWRPLLGPWRFIQVLSLCVIFLTVELNTFFLKFCLWIPPRNPLIVYRLVFWWLIALPTIREYNSYLQDRKPAKKVGAFCWLSVAICIVELLICIKFGHGSFPNPMPKWVVILWSCIGTGLLMSLAAWSWHLHRMMRRKHD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="48735" PGL_stop="45827"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48735" e_stop="48612"/>
            <exon e_start="48341" e_stop="48264"/>
            <exon e_start="48023" e_stop="47903"/>
            <exon e_start="46135" e_stop="45827"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.925" acc_prob="0.990" e_score="0.984"/>
          <exon-intron don_prob="0.588" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="48735" e_stop="48612" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.925" acc_prob="0.990">
            <gDNA_intron_boundary i_start="48611" i_stop="48342" i_length="270"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48341" e_stop="48264" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.588" acc_prob="0.978">
            <gDNA_intron_boundary i_start="48263" i_stop="48024" i_length="240"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48023" e_stop="47903" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.942" acc_prob="0.997">
            <gDNA_intron_boundary i_start="47902" i_stop="46136" i_length="1767"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="46135" e_stop="45827" e_length="309"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48735" stop="48612"/>
              <exon start="48341" stop="48264"/>
              <exon start="48023" stop="47903"/>
              <exon start="46135" stop="45827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584653" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGAAGATATTGGAGGCAAGTAATTTCACTTTTTCTTGTAATTCACCTCATGTTCTGTTTTAACTTTGCAGGGTAAACACAAAAGTCTATGCAGTCTACCAGATAACATGAAATTCTTTTGCAG : AAAGCTGGGATTGACATGCAAGGTCTTGGTGCTCCTGAGATACTTCAAAATTTTCACTCCCAACCGAGCTGCATAGAG : GTTAGTGGCACATGGAGCTGCCGTTCCTGAATATTTCTATGCAAACCTAAAGCAGTAAAGCGAAGGATGCCAATCTGGTTGAATCTCCATGCAAATTCAATCCCTTAAAGCATGCTAATAG : ATACCAGGTTGATTCTGTTCCATGTGTTATGCCTGATGTGCAAACGGTCAAATGCAAGTTCTTAGATTGTAGACAGAAGCAAAGGCAAAAAAAGGGGTTATTTCCTATCCGCCTAACCCCTGGTGAGAAGAATTATCGATACCTTTGCTGGTGGAGGTGACAGGTTTTGTGGAATAGTCGAGGTGTGCAAGTTGGCCTAGACACCACCAGTGCTTTCACAAAGGAATTCACAAGAGCAAATACATTTGAGAGTTGACACTGTGATAAGGGGTATGTGAACTTCACTACACGAATGTGTACGAAACCTTG</gDNA_template>
            <first_frame> M  K  I  L  E  A  S  N  F  T  F  S  C  N  S  P  H  V  L  F  *  L  C  R  V  N  T  K  V  Y  A  V  Y  Q  I  T  *  N  S  F  A   : E  S  W  D  *  H  A  R  S  W  C  S  *  D  T  S  K  F  S  L  P  T  E  L  H  R   : G  *  W  H  M  E  L  P  F  L  N  I  S  M  Q  T  *  S  S  K  A  K  D  A  N  L  V  E  S  P  C  K  F  N  P  L  K  H  A  N  R :   Y  Q  V  D  S  V  P  C  V  M  P  D  V  Q  T  V  K  C  K  F  L  D  C  R  Q  K  Q  R  Q  K  K  G  L  F  P  I  R  L  T  P  G  E  K  N  Y  R  Y  L  C  W  W  R  *  Q  V  L  W  N  S  R  G  V  Q  V  G  L  D  T  T  S  A  F  T  K  E  F  T  R  A  N  T  F  E  S  *  H  C  D  K  G  Y  V  N  F  T  T  R  M  C  T  K  P   </first_frame>
            <second_frame>  *  R  Y  W  R  Q  V  I  S  L  F  L  V  I  H  L  M  F  C  F  N  F  A  G  *  T  Q  K  S  M  Q  S  T  R  *  H  E  I  L  L  Q  :  K  A  G  I  D  M  Q  G  L  G  A  P  E  I  L  Q  N  F  H  S  Q  P  S  C  I  E  :  V  S  G  T  W  S  C  R  S  *  I  F  L  C  K  P  K  A  V  K  R  R  M  P  I  W  L  N  L  H  A  N  S  I  P  *  S  M  L  I   : D  T  R  L  I  L  F  H  V  L  C  L  M  C  K  R  S  N  A  S  S  *  I  V  D  R  S  K  G  K  K  R  G  Y  F  L  S  A  *  P  L  V  R  R  I  I  D  T  F  A  G  G  G  D  R  F  C  G  I  V  E  V  C  K  L  A  *  T  P  P  V  L  S  Q  R  N  S  Q  E  Q  I  H  L  R  V  D  T  V  I  R  G  M  *  T  S  L  H  E  C  V  R  N  L  </second_frame>
            <third_frame>   E  D  I  G  G  K  *  F  H  F  F  L  *  F  T  S  C  S  V  L  T  L  Q  G  K  H  K  S  L  C  S  L  P  D  N  M  K  F  F  C  R :   K  L  G  L  T  C  K  V  L  V  L  L  R  Y  F  K  I  F  T  P  N  R  A  A  *  R :   L  V  A  H  G  A  A  V  P  E  Y  F  Y  A  N  L  K  Q  *  S  E  G  C  Q  S  G  *  I  S  M  Q  I  Q  S  L  K  A  C  *  *  :  I  P  G  *  F  C  S  M  C  Y  A  *  C  A  N  G  Q  M  Q  V  L  R  L  *  T  E  A  K  A  K  K  G  V  I  S  Y  P  P  N  P  W  *  E  E  L  S  I  P  L  L  V  E  V  T  G  F  V  E  *  S  R  C  A  S  W  P  R  H  H  Q  C  F  H  K  G  I  H  K  S  K  Y  I  *  E  L  T  L  *  *  G  V  C  E  L  H  Y  T  N  V  Y  E  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0244P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47973" stop="47903"/>
                    <exon start="46135" stop="45976"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSKAKDANLVESPCKFNPLKHANRYQVDSVPCVMPDVQTVKCKFLDCRQKQRQKKGLFPIRLTPGEKNYRYLCWWR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="68182" PGL_stop="73143"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68182" e_stop="68557"/>
            <exon e_start="70225" e_stop="70532"/>
            <exon e_start="71768" e_stop="72058"/>
            <exon e_start="72652" e_stop="73143"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.756" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68182" e_stop="68557" e_length="376"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68558" i_stop="70224" i_length="1667"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70225" e_stop="70532" e_length="308"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.991">
            <gDNA_intron_boundary i_start="70533" i_stop="71767" i_length="1235"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71768" e_stop="72058" e_length="291"/>
          </exon>
          <intron i_serial="3" don_prob="0.756" acc_prob="0.995">
            <gDNA_intron_boundary i_start="72059" i_stop="72651" i_length="593"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72652" e_stop="73143" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68182" stop="68557"/>
              <exon start="70225" stop="70532"/>
              <exon start="71768" stop="72058"/>
              <exon start="72652" stop="73143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563007" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGTTACACCAGGTTCTGAAGATATTTTTTGGCAAAGACCAGTGAGGACCAATCATCCCTTCAACGCCAAATTCAGACAACAAAACCAAATCAAAGAGGAAAAGAACCCAAAAAACAGAAAGAAAAGAGATGGGAAGTTCAAGTGCTCTCATCTCAAATCTTCACCTGACTCAAACTAACTGTTTCAAATGCTTGAATTCAAGAACTTCTCTGAATATCAACCCCACAAGGCCAAAATTGAATCTTTCTAGCAGAAAATGCATCAAAAAGTTCAGCAGACTTGTTTGTTCTGCTGTTGAAGATTCCATGGAGAAACAGAGAGAAATTAGTGGAGCAAATGCTAGCAGTCTTGGTTCAGCTGTTGAAGATAGACCTG : ATGTCGGTGATGGCTCAAGCAAGAGTTTATTTAAGAACGGTGGATCAGATAGTGAAGGGAATGTTGTTTATGATTTCCTTTACCCTAATAAAGAGCTGCTACCAGATGATAAAGAAATGACTCTATTTGATCATTTGGAGGAGTTGCGCCAGAGACTCTTTGTGTCTGTTTTGGCCGTTGGTGCTGCTATAGTGGGATGTTTTGCCTTCTCAAAAGAACTTATCTTGATTCTTGAAGCCCCTGTTCTAGCACAAGGTGTTCGATTTTTGCAACTAGGTCCAGGAGAGTTCTTTTTCACTACTTTAAAA : GTCTCAGGATATAGTGGCCTTCTCTTAGGAGCTCCTGTGATTCTCTACGAGATCATAGCCTTCGTTCTTCCTGGTTTGACAATGTCAGAAAGAAGATTCCTGGCACCAATTGTCCTTGGATCCTCTGTTCTTTTCTATGCCGGCATTGTTTTCTCACACTTGGTCCTCACTCCAGCAGCCTTGAATTTCTTTGTTAATTATGCAGAAGGGGCTGTGGAATCTTTTTGGTCCATTGATCAATACTTCGAATTTGTGCTCGTACTCATGTTCAGTACAGGGTTGTCTTTCCAG : GTTCCTGTCATTCAACTGCTTCTGGGACAAACTGGTCTTGTGTCAGGAGATCAAATGCTGTCGATTTGGAGATACGTGGTGGTAGGTGCTGTCGTTGCTGCTGCAGTGCTCACACCATCAACTGATCCCCTTACTCAAATGCTTCTAGCTGGCCCACTTTTAGGTCTTTACTTGGGTGGAGCATGGATGGTTAAGCTTTCTGGGCGATAAGCGATTAAGCCTCTGTTCTTTGCATCAATATACCAAGTAGTATAATATGATCATGCATACAGCATAGGGATCCAAGATTCATGTAGCATATAAAGGACATCTGAGTAGAGGATATATGATCTGTTTTTTGAATCATTTGCTATTGTCACTGTTCAATGTGTATAATTAGGAGGTTAGCTGACACTCCATTCCCAAAGTCATTATGTTGGATCTCTTCACTAATATATGAAAGAAAATAGTCATGAGTATGCATTATATTTTCTTTCTGGCCTCAGATATGAA</gDNA_template>
            <first_frame> R  L  H  Q  V  L  K  I  F  F  G  K  D  Q  *  G  P  I  I  P  S  T  P  N  S  D  N  K  T  K  S  K  R  K  R  T  Q  K  T  E  R  K  E  M  G  S  S  S  A  L  I  S  N  L  H  L  T  Q  T  N  C  F  K  C  L  N  S  R  T  S  L  N  I  N  P  T  R  P  K  L  N  L  S  S  R  K  C  I  K  K  F  S  R  L  V  C  S  A  V  E  D  S  M  E  K  Q  R  E  I  S  G  A  N  A  S  S  L  G  S  A  V  E  D  R  P   : D  V  G  D  G  S  S  K  S  L  F  K  N  G  G  S  D  S  E  G  N  V  V  Y  D  F  L  Y  P  N  K  E  L  L  P  D  D  K  E  M  T  L  F  D  H  L  E  E  L  R  Q  R  L  F  V  S  V  L  A  V  G  A  A  I  V  G  C  F  A  F  S  K  E  L  I  L  I  L  E  A  P  V  L  A  Q  G  V  R  F  L  Q  L  G  P  G  E  F  F  F  T  T  L  K  :  V  S  G  Y  S  G  L  L  L  G  A  P  V  I  L  Y  E  I  I  A  F  V  L  P  G  L  T  M  S  E  R  R  F  L  A  P  I  V  L  G  S  S  V  L  F  Y  A  G  I  V  F  S  H  L  V  L  T  P  A  A  L  N  F  F  V  N  Y  A  E  G  A  V  E  S  F  W  S  I  D  Q  Y  F  E  F  V  L  V  L  M  F  S  T  G  L  S  F  Q  :  V  P  V  I  Q  L  L  L  G  Q  T  G  L  V  S  G  D  Q  M  L  S  I  W  R  Y  V  V  V  G  A  V  V  A  A  A  V  L  T  P  S  T  D  P  L  T  Q  M  L  L  A  G  P  L  L  G  L  Y  L  G  G  A  W  M  V  K  L  S  G  R  *  A  I  K  P  L  F  F  A  S  I  Y  Q  V  V  *  Y  D  H  A  Y  S  I  G  I  Q  D  S  C  S  I  *  R  T  S  E  *  R  I  Y  D  L  F  F  E  S  F  A  I  V  T  V  Q  C  V  *  L  G  G  *  L  T  L  H  S  Q  S  H  Y  V  G  S  L  H  *  Y  M  K  E  N  S  H  E  Y  A  L  Y  F  L  S  G  L  R  Y  E </first_frame>
            <second_frame>  G  Y  T  R  F  *  R  Y  F  L  A  K  T  S  E  D  Q  S  S  L  Q  R  Q  I  Q  T  T  K  P  N  Q  R  G  K  E  P  K  K  Q  K  E  K  R  W  E  V  Q  V  L  S  S  Q  I  F  T  *  L  K  L  T  V  S  N  A  *  I  Q  E  L  L  *  I  S  T  P  Q  G  Q  N  *  I  F  L  A  E  N  A  S  K  S  S  A  D  L  F  V  L  L  L  K  I  P  W  R  N  R  E  K  L  V  E  Q  M  L  A  V  L  V  Q  L  L  K  I  D  L  :  M  S  V  M  A  Q  A  R  V  Y  L  R  T  V  D  Q  I  V  K  G  M  L  F  M  I  S  F  T  L  I  K  S  C  Y  Q  M  I  K  K  *  L  Y  L  I  I  W  R  S  C  A  R  D  S  L  C  L  F  W  P  L  V  L  L  *  W  D  V  L  P  S  Q  K  N  L  S  *  F  L  K  P  L  F  *  H  K  V  F  D  F  C  N  *  V  Q  E  S  S  F  S  L  L  *  K :   S  Q  D  I  V  A  F  S  *  E  L  L  *  F  S  T  R  S  *  P  S  F  F  L  V  *  Q  C  Q  K  E  D  S  W  H  Q  L  S  L  D  P  L  F  F  S  M  P  A  L  F  S  H  T  W  S  S  L  Q  Q  P  *  I  S  L  L  I  M  Q  K  G  L  W  N  L  F  G  P  L  I  N  T  S  N  L  C  S  Y  S  C  S  V  Q  G  C  L  S  R :   F  L  S  F  N  C  F  W  D  K  L  V  L  C  Q  E  I  K  C  C  R  F  G  D  T  W  W  *  V  L  S  L  L  L  Q  C  S  H  H  Q  L  I  P  L  L  K  C  F  *  L  A  H  F  *  V  F  T  W  V  E  H  G  W  L  S  F  L  G  D  K  R  L  S  L  C  S  L  H  Q  Y  T  K  *  Y  N  M  I  M  H  T  A  *  G  S  K  I  H  V  A  Y  K  G  H  L  S  R  G  Y  M  I  C  F  L  N  H  L  L  L  S  L  F  N  V  Y  N  *  E  V  S  *  H  S  I  P  K  V  I  M  L  D  L  F  T  N  I  *  K  K  I  V  M  S  M  H  Y  I  F  F  L  A  S  D  M   </second_frame>
            <third_frame>   V  T  P  G  S  E  D  I  F  W  Q  R  P  V  R  T  N  H  P  F  N  A  K  F  R  Q  Q  N  Q  I  K  E  E  K  N  P  K  N  R  K  K  R  D  G  K  F  K  C  S  H  L  K  S  S  P  D  S  N  *  L  F  Q  M  L  E  F  K  N  F  S  E  Y  Q  P  H  K  A  K  I  E  S  F  *  Q  K  M  H  Q  K  V  Q  Q  T  C  L  F  C  C  *  R  F  H  G  E  T  E  R  N  *  W  S  K  C  *  Q  S  W  F  S  C  *  R  *  T  * :   C  R  *  W  L  K  Q  E  F  I  *  E  R  W  I  R  *  *  R  E  C  C  L  *  F  P  L  P  *  *  R  A  A  T  R  *  *  R  N  D  S  I  *  S  F  G  G  V  A  P  E  T  L  C  V  C  F  G  R  W  C  C  Y  S  G  M  F  C  L  L  K  R  T  Y  L  D  S  *  S  P  C  S  S  T  R  C  S  I  F  A  T  R  S  R  R  V  L  F  H  Y  F  K   : S  L  R  I  *  W  P  S  L  R  S  S  C  D  S  L  R  D  H  S  L  R  S  S  W  F  D  N  V  R  K  K  I  P  G  T  N  C  P  W  I  L  C  S  F  L  C  R  H  C  F  L  T  L  G  P  H  S  S  S  L  E  F  L  C  *  L  C  R  R  G  C  G  I  F  L  V  H  *  S  I  L  R  I  C  A  R  T  H  V  Q  Y  R  V  V  F  P   : G  S  C  H  S  T  A  S  G  T  N  W  S  C  V  R  R  S  N  A  V  D  L  E  I  R  G  G  R  C  C  R  C  C  C  S  A  H  T  I  N  *  S  P  Y  S  N  A  S  S  W  P  T  F  R  S  L  L  G  W  S  M  D  G  *  A  F  W  A  I  S  D  *  A  S  V  L  C  I  N  I  P  S  S  I  I  *  S  C  I  Q  H  R  D  P  R  F  M  *  H  I  K  D  I  *  V  E  D  I  *  S  V  F  *  I  I  C  Y  C  H  C  S  M  C  I  I  R  R  L  A  D  T  P  F  P  K  S  L  C  W  I  S  S  L  I  Y  E  R  K  *  S  *  V  C  I  I  F  S  F  W  P  Q  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0244P17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68227" stop="68557"/>
                    <exon start="70225" stop="70532"/>
                    <exon start="71768" stop="72058"/>
                    <exon start="72652" stop="72861"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1137</number_coding_nucleotides>
                  <number_encoded_amino_acids>379</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPIIPSTPNSDNKTKSKRKRTQKTERKEMGSSSALISNLHLTQTNCFKCLNSRTSLNINPTRPKLNLSSRKCIKKFSRLVCSAVEDSMEKQREISGANASSLGSAVEDRPDVGDGSSKSLFKNGGSDSEGNVVYDFLYPNKELLPDDKEMTLFDHLEELRQRLFVSVLAVGAAIVGCFAFSKELILILEAPVLAQGVRFLQLGPGEFFFTTLKVSGYSGLLLGAPVILYEIIAFVLPGLTMSERRFLAPIVLGSSVLFYAGIVFSHLVLTPAALNFFVNYAEGAVESFWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQTGLVSGDQMLSIWRYVVVGAVVAAAVLTPSTDPLTQMLLAGPLLGLYLGGAWMVKLSGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="76854" PGL_stop="73348"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76854" e_stop="76725"/>
            <exon e_start="76609" e_stop="76516"/>
            <exon e_start="75306" e_stop="75097"/>
            <exon e_start="74293" e_stop="73348"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="0.931"/>
          <exon-intron don_prob="0.953" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="76854" e_stop="76725" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76724" i_stop="76610" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76609" e_stop="76516" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.953" acc_prob="0.998">
            <gDNA_intron_boundary i_start="76515" i_stop="75307" i_length="1209"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75306" e_stop="75097" e_length="210"/>
          </exon>
          <intron i_serial="3" don_prob="0.928" acc_prob="0.996">
            <gDNA_intron_boundary i_start="75096" i_stop="74294" i_length="803"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74293" e_stop="73348" e_length="946"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76854" stop="76725"/>
              <exon start="76609" stop="76516"/>
              <exon start="75306" stop="75097"/>
              <exon start="74293" stop="73348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584402" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCCACTATTCTGTCTGTCAAAAGAGTGAAGGGTTTTAGAAAGAGAGAAAATAATGGGAAAAGCAGCGAAGGAGCAATTGAATAGAGCTCTGAGTGAGCATCTAAACACCATTTATGAAACTCTTGAG : GCATTGTGTCAAACACCATCTTCATCTCTTGAAAAAGTCAGCTGGAAAGAGGTTATTCAGATGGGTGAACAGCTTTATAAACAAGCCACTATGG : TTGGAATGCTTTGGACTGGAGAAGCTCCAGAGGTTAAAGCACTGGAGGAGAACATGGCTTCATATTTTAATATGCTGCAAGGGCTCCTTTTGCTTTCCCACTCAAGTACAGTTGGCGGAGGACCTACCCTGTGTTCCTGCATTCATGCATCCATTAAACAAGTTGTTGATAGCAGTTTCATGTTAATGAAAGAGTCCGTGTCTTCATATG : GATCTAACAACAAAACTCAGAAATTATCAATCCCGCAGTTGGTGGGCACTGTCTGGGAAGCTTGTTCTGCTCTTAAGAAGACTCCAGCCACAAATATTACTGCTATAGGTCGAGCAATGACACAACTTGCTGTTTCCATGAAGGATGTACTTCGTGAAATGAATGAACTGAAGCCAGCGTCATCTGATGTTGGAGATGAATCTTCTGTTCAAGATTCTGCTGAAGGAGATCAGGATAGTGATGATTCATTTGCAGGTGATCTAGGCAATGATCTTTCTGCGGAGGAAATGGAAATTGCTCGTTTGACTACTGACGTGGTGTCTGCAACACTTGTGGTCATTAAAGAACTTATTCGCTCCATTACAAGCTTGCTTAAGCAGGAAAGTACTGCGGATACTGCTACTTTTGTACCCTCTCTAGAGACACTGCTGAAACTTTCTCAAGAAATCGGACTGCAAATTGATGAACTTGGAGCTTCTCTGTATCCTCCACAAGAAATTTCTTCATTGAAGACTGCTATAGAGAAGATATCATGTGCTACTGATGAAATATTGGTGGAGCTGGAAAAACTTAAAGGATGTTCTGAAGATTTTGTTAAAACATGCAATGGTTTGCGGAGCTCATTGAAACAACTGGAAGCAGAATTAGATCACTCAGATGCAACTGATACAATGCCCAAGATAGAAAACCTCGCGATCGCGTAATTATAGTAAAGGGGAAAGGTTAAGGGAGGAAAAATATGCTTTTGAATGAGCTTCTTTGATTGTAGCTATGGGCATCGAATTGAAAGTTCTTACATTTATTTGGATATGTTATTGTTCTTTTTTGTGACCTTATGCCATCAAATGAATATAGTGTGTTGTCAAACCAGCTGCATATTGGAGTAATACTGTGCAAATATTTCTATAACAATCATCTATATATAGCAATATTTGGCTGTAATGGC</gDNA_template>
            <first_frame> F  S  T  I  L  S  V  K  R  V  K  G  F  R  K  R  E  N  N  G  K  S  S  E  G  A  I  E  *  S  S  E  *  A  S  K  H  H  L  *  N  S  *   : G  I  V  S  N  T  I  F  I  S  *  K  S  Q  L  E  R  G  Y  S  D  G  *  T  A  L  *  T  S  H  Y  G :   W  N  A  L  D  W  R  S  S  R  G  *  S  T  G  G  E  H  G  F  I  F  *  Y  A  A  R  A  P  F  A  F  P  L  K  Y  S  W  R  R  T  Y  P  V  F  L  H  S  C  I  H  *  T  S  C  *  *  Q  F  H  V  N  E  R  V  R  V  F  I  W :   I  *  Q  Q  N  S  E  I  I  N  P  A  V  G  G  H  C  L  G  S  L  F  C  S  *  E  D  S  S  H  K  Y  Y  C  Y  R  S  S  N  D  T  T  C  C  F  H  E  G  C  T  S  *  N  E  *  T  E  A  S  V  I  *  C  W  R  *  I  F  C  S  R  F  C  *  R  R  S  G  *  *  *  F  I  C  R  *  S  R  Q  *  S  F  C  G  G  N  G  N  C  S  F  D  Y  *  R  G  V  C  N  T  C  G  H  *  R  T  Y  S  L  H  Y  K  L  A  *  A  G  K  Y  C  G  Y  C  Y  F  C  T  L  S  R  D  T  A  E  T  F  S  R  N  R  T  A  N  *  *  T  W  S  F  S  V  S  S  T  R  N  F  F  I  E  D  C  Y  R  E  D  I  M  C  Y  *  *  N  I  G  G  A  G  K  T  *  R  M  F  *  R  F  C  *  N  M  Q  W  F  A  E  L  I  E  T  T  G  S  R  I  R  S  L  R  C  N  *  Y  N  A  Q  D  R  K  P  R  D  R  V  I  I  V  K  G  K  G  *  G  R  K  N  M  L  L  N  E  L  L  *  L  *  L  W  A  S  N  *  K  F  L  H  L  F  G  Y  V  I  V  L  F  C  D  L  M  P  S  N  E  Y  S  V  L  S  N  Q  L  H  I  G  V  I  L  C  K  Y  F  Y  N  N  H  L  Y  I  A  I  F  G  C  N  G </first_frame>
            <second_frame>  S  P  L  F  C  L  S  K  E  *  R  V  L  E  R  E  K  I  M  G  K  A  A  K  E  Q  L  N  R  A  L  S  E  H  L  N  T  I  Y  E  T  L  E  :  A  L  C  Q  T  P  S  S  S  L  E  K  V  S  W  K  E  V  I  Q  M  G  E  Q  L  Y  K  Q  A  T  M   : V  G  M  L  W  T  G  E  A  P  E  V  K  A  L  E  E  N  M  A  S  Y  F  N  M  L  Q  G  L  L  L  L  S  H  S  S  T  V  G  G  G  P  T  L  C  S  C  I  H  A  S  I  K  Q  V  V  D  S  S  F  M  L  M  K  E  S  V  S  S  Y   : G  S  N  N  K  T  Q  K  L  S  I  P  Q  L  V  G  T  V  W  E  A  C  S  A  L  K  K  T  P  A  T  N  I  T  A  I  G  R  A  M  T  Q  L  A  V  S  M  K  D  V  L  R  E  M  N  E  L  K  P  A  S  S  D  V  G  D  E  S  S  V  Q  D  S  A  E  G  D  Q  D  S  D  D  S  F  A  G  D  L  G  N  D  L  S  A  E  E  M  E  I  A  R  L  T  T  D  V  V  S  A  T  L  V  V  I  K  E  L  I  R  S  I  T  S  L  L  K  Q  E  S  T  A  D  T  A  T  F  V  P  S  L  E  T  L  L  K  L  S  Q  E  I  G  L  Q  I  D  E  L  G  A  S  L  Y  P  P  Q  E  I  S  S  L  K  T  A  I  E  K  I  S  C  A  T  D  E  I  L  V  E  L  E  K  L  K  G  C  S  E  D  F  V  K  T  C  N  G  L  R  S  S  L  K  Q  L  E  A  E  L  D  H  S  D  A  T  D  T  M  P  K  I  E  N  L  A  I  A  *  L  *  *  R  G  K  V  K  G  G  K  I  C  F  *  M  S  F  F  D  C  S  Y  G  H  R  I  E  S  S  Y  I  Y  L  D  M  L  L  F  F  F  V  T  L  C  H  Q  M  N  I  V  C  C  Q  T  S  C  I  L  E  *  Y  C  A  N  I  S  I  T  I  I  Y  I  *  Q  Y  L  A  V  M   </second_frame>
            <third_frame>   L  H  Y  S  V  C  Q  K  S  E  G  F  *  K  E  R  K  *  W  E  K  Q  R  R  S  N  *  I  E  L  *  V  S  I  *  T  P  F  M  K  L  L  R :   H  C  V  K  H  H  L  H  L  L  K  K  S  A  G  K  R  L  F  R  W  V  N  S  F  I  N  K  P  L  W  :  L  E  C  F  G  L  E  K  L  Q  R  L  K  H  W  R  R  T  W  L  H  I  L  I  C  C  K  G  S  F  C  F  P  T  Q  V  Q  L  A  E  D  L  P  C  V  P  A  F  M  H  P  L  N  K  L  L  I  A  V  S  C  *  *  K  S  P  C  L  H  M  :  D  L  T  T  K  L  R  N  Y  Q  S  R  S  W  W  A  L  S  G  K  L  V  L  L  L  R  R  L  Q  P  Q  I  L  L  L  *  V  E  Q  *  H  N  L  L  F  P  *  R  M  Y  F  V  K  *  M  N  *  S  Q  R  H  L  M  L  E  M  N  L  L  F  K  I  L  L  K  E  I  R  I  V  M  I  H  L  Q  V  I  *  A  M  I  F  L  R  R  K  W  K  L  L  V  *  L  L  T  W  C  L  Q  H  L  W  S  L  K  N  L  F  A  P  L  Q  A  C  L  S  R  K  V  L  R  I  L  L  L  L  Y  P  L  *  R  H  C  *  N  F  L  K  K  S  D  C  K  L  M  N  L  E  L  L  C  I  L  H  K  K  F  L  H  *  R  L  L  *  R  R  Y  H  V  L  L  M  K  Y  W  W  S  W  K  N  L  K  D  V  L  K  I  L  L  K  H  A  M  V  C  G  A  H  *  N  N  W  K  Q  N  *  I  T  Q  M  Q  L  I  Q  C  P  R  *  K  T  S  R  S  R  N  Y  S  K  G  E  R  L  R  E  E  K  Y  A  F  E  *  A  S  L  I  V  A  M  G  I  E  L  K  V  L  T  F  I  W  I  C  Y  C  S  F  L  *  P  Y  A  I  K  *  I  *  C  V  V  K  P  A  A  Y  W  S  N  T  V  Q  I  F  L  *  Q  S  S  I  Y  S  N  I  W  L  *  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0244P17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76823" stop="76725"/>
                    <exon start="76609" stop="76516"/>
                    <exon start="75306" stop="75097"/>
                    <exon start="74293" stop="73590"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1104</number_coding_nucleotides>
                  <number_encoded_amino_acids>368</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVLEREKIMGKAAKEQLNRALSEHLNTIYETLEALCQTPSSSLEKVSWKEVIQMGEQLYKQATMVGMLWTGEAPEVKALEENMASYFNMLQGLLLLSHSSTVGGGPTLCSCIHASIKQVVDSSFMLMKESVSSYGSNNKTQKLSIPQLVGTVWEACSALKKTPATNITAIGRAMTQLAVSMKDVLREMNELKPASSDVGDESSVQDSAEGDQDSDDSFAGDLGNDLSAEEMEIARLTTDVVSATLVVIKELIRSITSLLKQESTADTATFVPSLETLLKLSQEIGLQIDELGASLYPPQEISSLKTAIEKISCATDEILVELEKLKGCSEDFVKTCNGLRSSLKQLEAELDHSDATDTMPKIENLAIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="79252" PGL_stop="78108"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79252" e_stop="79099"/>
            <exon e_start="78447" e_stop="78108"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.964" e_score="0.929"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="79252" e_stop="79099" e_length="154"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.964">
            <gDNA_intron_boundary i_start="79098" i_stop="78448" i_length="651"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="78447" e_stop="78108" e_length="340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79252" stop="79099"/>
              <exon start="78447" stop="78108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599539" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGACGATACTAGTTAGCGCAGCTGTATTTGCTAGTCGGAACGTATTTGGCTACATTTTCAGCAACGAGAAGGAAGTCGTGGACTATGTAGCAAAGATGGCTCCTCTTCTATGTCTATCAGTCATTACTGACAGTCTTCAAGGAACCCTTTCAG : GTGTCGCGAGGGGATGTGGTTGGCAGCATATCGGAGCCTATGTGAATCTTGCTTCATTTTACCTTTGTGGCATTCCTATCGCTGCTTCATTAGCGTTTTGGCTCAACTTTCGAGGAAAAGGCCTGTGGATGGGCATACTTTCTGGTGCAGCTCTGCAAACTATTCTACTTTCTGTGATAACATGCTGCACAAACTGGGAAAAACAAGCTGCAATGGCAAGGGAGAGGCTTCATGCTGATGAAAAATCATCAGTAGATAACGTACTATCGTAAAAAAATGCAGAAAATTCTCTTCGAAATACTCGAGTAATGTTAATTGGTTTATTGAGGCATCTTTGCTC</gDNA_template>
            <first_frame> E  T  I  L  V  S  A  A  V  F  A  S  R  N  V  F  G  Y  I  F  S  N  E  K  E  V  V  D  Y  V  A  K  M  A  P  L  L  C  L  S  V  I  T  D  S  L  Q  G  T  L  S   : G  V  A  R  G  C  G  W  Q  H  I  G  A  Y  V  N  L  A  S  F  Y  L  C  G  I  P  I  A  A  S  L  A  F  W  L  N  F  R  G  K  G  L  W  M  G  I  L  S  G  A  A  L  Q  T  I  L  L  S  V  I  T  C  C  T  N  W  E  K  Q  A  A  M  A  R  E  R  L  H  A  D  E  K  S  S  V  D  N  V  L  S  *  K  N  A  E  N  S  L  R  N  T  R  V  M  L  I  G  L  L  R  H  L  C   </first_frame>
            <second_frame>  R  R  Y  *  L  A  Q  L  Y  L  L  V  G  T  Y  L  A  T  F  S  A  T  R  R  K  S  W  T  M  *  Q  R  W  L  L  F  Y  V  Y  Q  S  L  L  T  V  F  K  E  P  F  Q  :  V  S  R  G  D  V  V  G  S  I  S  E  P  M  *  I  L  L  H  F  T  F  V  A  F  L  S  L  L  H  *  R  F  G  S  T  F  E  E  K  A  C  G  W  A  Y  F  L  V  Q  L  C  K  L  F  Y  F  L  *  *  H  A  A  Q  T  G  K  N  K  L  Q  W  Q  G  R  G  F  M  L  M  K  N  H  Q  *  I  T  Y  Y  R  K  K  M  Q  K  I  L  F  E  I  L  E  *  C  *  L  V  Y  *  G  I  F  A  </second_frame>
            <third_frame>   D  D  T  S  *  R  S  C  I  C  *  S  E  R  I  W  L  H  F  Q  Q  R  E  G  S  R  G  L  C  S  K  D  G  S  S  S  M  S  I  S  H  Y  *  Q  S  S  R  N  P  F  R :   C  R  E  G  M  W  L  A  A  Y  R  S  L  C  E  S  C  F  I  L  P  L  W  H  S  Y  R  C  F  I  S  V  L  A  Q  L  S  R  K  R  P  V  D  G  H  T  F  W  C  S  S  A  N  Y  S  T  F  C  D  N  M  L  H  K  L  G  K  T  S  C  N  G  K  G  E  A  S  C  *  *  K  I  I  S  R  *  R  T  I  V  K  K  C  R  K  F  S  S  K  Y  S  S  N  V  N  W  F  I  E  A  S  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0244P17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79252" stop="79099"/>
                    <exon start="78447" stop="78176"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETILVSAAVFASRNVFGYIFSNEKEVVDYVAKMAPLLCLSVITDSLQGTLSGVARGCGWQHIGAYVNLASFYLCGIPIAASLAFWLNFRGKGLWMGILSGAALQTILLSVITCCTNWEKQAAMARERLHADEKSSVDNVLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="82174" PGL_stop="80321"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82174" e_stop="81673"/>
            <exon e_start="80934" e_stop="80861"/>
            <exon e_start="80438" e_stop="80321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.964" e_score="0.998"/>
          <exon-intron don_prob="0.058" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="82174" e_stop="81673" e_length="502"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.964">
            <gDNA_intron_boundary i_start="81672" i_stop="80935" i_length="738"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80934" e_stop="80861" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.058" acc_prob="0.990">
            <gDNA_intron_boundary i_start="80860" i_stop="80439" i_length="422"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="80438" e_stop="80321" e_length="118"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82174" stop="81673"/>
              <exon start="80934" stop="80861"/>
              <exon start="80438" stop="80321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598171" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTCATAAAAATACAATCTTTTTCAAAAAGGGAGTTCTTTTTTATTAATTTAAGATCCCTTTTACATAGTATATTCAAAAGGGGTGGCCTTGTTCTCCCCTTATAAATCTTGTAAAGAAATCTTGAGTTCTTACAAGGTATTTACAAAAAGGTGTCTTTTTTGAAAGTTCAAGAATCTTTTTTTAAATTTTTACAAGGTTTTCTCAAAAAGTTCTTTTTTTTTTTACAAGTTCAAAGACTTGTAAAATAAAAAAAATAAAAATATGGAGAGTGTAGAAGAAGGATTGTTATTGAAAGAAAGGGAGTTAGTTAAATGGGGAGTAATTTGGGAGGAAGTGAAGGAAATTGGTTATTTGGCTGGTCCTATGATAATTGTGACACTTTCACAGTATTTTTTGCAAACAATATCATTGATGATGGTTGGTCATTTGGGTGAACTTGCCCTCTCAAGTACTTCTATTGCTATTTCTATTGCTGGAGTCACTGGTCTCAGCTTACTT : GTAGCGCGCCTTACTACTCTATGGATGTCGATATATATAAGTTAAGCTCAGTTTTACTTGTATACATATTTTAG : CTGGGAATGGGCACTGCACTAGAAACTCTTTGTGGACAGGCTTTCGGAGCGAAACAATATCAAAGACTTGGTACTCAAACATACACAGCCATTTTGTCTCTCTTCATTGTTTGCATTC</gDNA_template>
            <first_frame> S  L  I  K  I  Q  S  F  S  K  R  E  F  F  F  I  N  L  R  S  L  L  H  S  I  F  K  R  G  G  L  V  L  P  L  *  I  L  *  R  N  L  E  F  L  Q  G  I  Y  K  K  V  S  F  L  K  V  Q  E  S  F  F  K  F  L  Q  G  F  L  K  K  F  F  F  F  L  Q  V  Q  R  L  V  K  *  K  K  *  K  Y  G  E  C  R  R  R  I  V  I  E  R  K  G  V  S  *  M  G  S  N  L  G  G  S  E  G  N  W  L  F  G  W  S  Y  D  N  C  D  T  F  T  V  F  F  A  N  N  I  I  D  D  G  W  S  F  G  *  T  C  P  L  K  Y  F  Y  C  Y  F  Y  C  W  S  H  W  S  Q  L  T   : C  S  A  P  Y  Y  S  M  D  V  D  I  Y  K  L  S  S  V  L  L  V  Y  I  F  *  :  L  G  M  G  T  A  L  E  T  L  C  G  Q  A  F  G  A  K  Q  Y  Q  R  L  G  T  Q  T  Y  T  A  I  L  S  L  F  I  V  C  I  </first_frame>
            <second_frame>  L  S  *  K  Y  N  L  F  Q  K  G  S  S  F  L  L  I  *  D  P  F  Y  I  V  Y  S  K  G  V  A  L  F  S  P  Y  K  S  C  K  E  I  L  S  S  Y  K  V  F  T  K  R  C  L  F  *  K  F  K  N  L  F  L  N  F  Y  K  V  F  S  K  S  S  F  F  F  Y  K  F  K  D  L  *  N  K  K  N  K  N  M  E  S  V  E  E  G  L  L  L  K  E  R  E  L  V  K  W  G  V  I  W  E  E  V  K  E  I  G  Y  L  A  G  P  M  I  I  V  T  L  S  Q  Y  F  L  Q  T  I  S  L  M  M  V  G  H  L  G  E  L  A  L  S  S  T  S  I  A  I  S  I  A  G  V  T  G  L  S  L  L  :  V  A  R  L  T  T  L  W  M  S  I  Y  I  S  *  A  Q  F  Y  L  Y  T  Y  F  S :   W  E  W  A  L  H  *  K  L  F  V  D  R  L  S  E  R  N  N  I  K  D  L  V  L  K  H  T  Q  P  F  C  L  S  S  L  F  A  F </second_frame>
            <third_frame>   S  H  K  N  T  I  F  F  K  K  G  V  L  F  Y  *  F  K  I  P  F  T  *  Y  I  Q  K  G  W  P  C  S  P  L  I  N  L  V  K  K  S  *  V  L  T  R  Y  L  Q  K  G  V  F  F  E  S  S  R  I  F  F  *  I  F  T  R  F  S  Q  K  V  L  F  F  F  T  S  S  K  T  C  K  I  K  K  I  K  I  W  R  V  *  K  K  D  C  Y  *  K  K  G  S  *  L  N  G  E  *  F  G  R  K  *  R  K  L  V  I  W  L  V  L  *  *  L  *  H  F  H  S  I  F  C  K  Q  Y  H  *  *  W  L  V  I  W  V  N  L  P  S  Q  V  L  L  L  L  F  L  L  L  E  S  L  V  S  A  Y  L :   *  R  A  L  L  L  Y  G  C  R  Y  I  *  V  K  L  S  F  T  C  I  H  I  L   : A  G  N  G  H  C  T  R  N  S  L  W  T  G  F  R  S  E  T  I  S  K  T  W  Y  S  N  I  H  S  H  F  V  S  L  H  C  L  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0244P17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81927" stop="81673"/>
                    <exon start="80934" stop="80890"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKKNKNMESVEEGLLLKERELVKWGVIWEEVKEIGYLAGPMIIVTLSQYFLQTISLMMVGHLGELALSSTSIAISIAGVTGLSLLVARLTTLWMSIYIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="96032" PGL_stop="98463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96032" e_stop="96121"/>
            <exon e_start="96853" e_stop="96957"/>
            <exon e_start="97760" e_stop="97837"/>
            <exon e_start="97928" e_stop="98463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.379" acc_prob="0.995" e_score="0.933"/>
          <exon-intron don_prob="0.974" acc_prob="0.984" e_score="0.981"/>
          <exon-intron don_prob="0.874" acc_prob="0.947" e_score="0.987"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="96032" e_stop="96121" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.379" acc_prob="0.995">
            <gDNA_intron_boundary i_start="96122" i_stop="96852" i_length="731"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="96853" e_stop="96957" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.984">
            <gDNA_intron_boundary i_start="96958" i_stop="97759" i_length="802"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="97760" e_stop="97837" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.874" acc_prob="0.947">
            <gDNA_intron_boundary i_start="97838" i_stop="97927" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="97928" e_stop="98463" e_length="536"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96032" stop="96121"/>
              <exon start="96853" stop="96957"/>
              <exon start="97760" stop="97837"/>
              <exon start="97928" stop="98463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583786" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTCAATTATATTTAGGAGTAGGCGCGAACACCAAAATTTTACAGATTTTTTTTTTTTGGTATGATCTGTTTAAATTCATGGAGAATAAG : GATATGGACCTTGAGAACATAAAATCAAACCTTCTTGCTTTAAGGCAATTGTATGGTCTATTGCGAAATGACAGAGATGGTGTTTCGAACTTGAACTCTGATGGT : TTGGACCATGAAGCGCGAGTCATGTTAAAGAATCTACTCGATACAACAACGAATGATCTACTTAAGGCTCATTCTGAG : ATCATAGCACATCAGGCGCACGTGCACAACTTACCTCAGCCTCAGCATCTGGTTGACATGGTGAAGCAACGTCCTCTTGCTTTATTAGACATGCCAAAATCTTCAGCTGTTATTCAAAGTTGTGGAAATGAGCCAGTTGTCGTGGAGGAATCCACCTTATCGAAAGAGAAGCAGGAATCTATCGTTCCAGTTACTCAGACGGCTAGCGTGCAGCGTCCAAAATTTAGCTTTAGTGCAAGTGAAACTGGAAATAAAAGAAAGTTTTGCAGAATCTGTCAGCGCCCAAAATTTGAAAAGGCGTTTGTTCCTTGTATAAACACTAAATCTTCTGAAATAGAAGCTTCACATTCTACAAAGGTCGTGGCGTTGCAAGAACAGCAGAATAGTCTATTCGGCAGTTTTTCTCGGGATATTCAACAAGAAGCATTGCAATCATTAAGCACTGAAAGTAGAAAGCCGAAAGAAGTGCTCGATCTCCATCGCATATCAAGTGGTGCAGAAACTGTGGCTTCCATATCAGACAGACCAGCTAATGA</gDNA_template>
            <first_frame> C  Q  L  Y  L  G  V  G  A  N  T  K  I  L  Q  I  F  F  F  W  Y  D  L  F  K  F  M  E  N  K  :  D  M  D  L  E  N  I  K  S  N  L  L  A  L  R  Q  L  Y  G  L  L  R  N  D  R  D  G  V  S  N  L  N  S  D  G  :  L  D  H  E  A  R  V  M  L  K  N  L  L  D  T  T  T  N  D  L  L  K  A  H  S  E  :  I  I  A  H  Q  A  H  V  H  N  L  P  Q  P  Q  H  L  V  D  M  V  K  Q  R  P  L  A  L  L  D  M  P  K  S  S  A  V  I  Q  S  C  G  N  E  P  V  V  V  E  E  S  T  L  S  K  E  K  Q  E  S  I  V  P  V  T  Q  T  A  S  V  Q  R  P  K  F  S  F  S  A  S  E  T  G  N  K  R  K  F  C  R  I  C  Q  R  P  K  F  E  K  A  F  V  P  C  I  N  T  K  S  S  E  I  E  A  S  H  S  T  K  V  V  A  L  Q  E  Q  Q  N  S  L  F  G  S  F  S  R  D  I  Q  Q  E  A  L  Q  S  L  S  T  E  S  R  K  P  K  E  V  L  D  L  H  R  I  S  S  G  A  E  T  V  A  S  I  S  D  R  P  A  N   </first_frame>
            <second_frame>  V  N  Y  I  *  E  *  A  R  T  P  K  F  Y  R  F  F  F  F  G  M  I  C  L  N  S  W  R  I  R :   I  W  T  L  R  T  *  N  Q  T  F  L  L  *  G  N  C  M  V  Y  C  E  M  T  E  M  V  F  R  T  *  T  L  M  V :   W  T  M  K  R  E  S  C  *  R  I  Y  S  I  Q  Q  R  M  I  Y  L  R  L  I  L  R :   S  *  H  I  R  R  T  C  T  T  Y  L  S  L  S  I  W  L  T  W  *  S  N  V  L  L  L  Y  *  T  C  Q  N  L  Q  L  L  F  K  V  V  E  M  S  Q  L  S  W  R  N  P  P  Y  R  K  R  S  R  N  L  S  F  Q  L  L  R  R  L  A  C  S  V  Q  N  L  A  L  V  Q  V  K  L  E  I  K  E  S  F  A  E  S  V  S  A  Q  N  L  K  R  R  L  F  L  V  *  T  L  N  L  L  K  *  K  L  H  I  L  Q  R  S  W  R  C  K  N  S  R  I  V  Y  S  A  V  F  L  G  I  F  N  K  K  H  C  N  H  *  A  L  K  V  E  S  R  K  K  C  S  I  S  I  A  Y  Q  V  V  Q  K  L  W  L  P  Y  Q  T  D  Q  L  M  </second_frame>
            <third_frame>   S  I  I  F  R  S  R  R  E  H  Q  N  F  T  D  F  F  F  L  V  *  S  V  *  I  H  G  E  *   : G  Y  G  P  *  E  H  K  I  K  P  S  C  F  K  A  I  V  W  S  I  A  K  *  Q  R  W  C  F  E  L  E  L  *  W   : F  G  P  *  S  A  S  H  V  K  E  S  T  R  Y  N  N  E  *  S  T  *  G  S  F  *   : D  H  S  T  S  G  A  R  A  Q  L  T  S  A  S  A  S  G  *  H  G  E  A  T  S  S  C  F  I  R  H  A  K  I  F  S  C  Y  S  K  L  W  K  *  A  S  C  R  G  G  I  H  L  I  E  R  E  A  G  I  Y  R  S  S  Y  S  D  G  *  R  A  A  S  K  I  *  L  *  C  K  *  N  W  K  *  K  K  V  L  Q  N  L  S  A  P  K  I  *  K  G  V  C  S  L  Y  K  H  *  I  F  *  N  R  S  F  T  F  Y  K  G  R  G  V  A  R  T  A  E  *  S  I  R  Q  F  F  S  G  Y  S  T  R  S  I  A  I  I  K  H  *  K  *  K  A  E  R  S  A  R  S  P  S  H  I  K  W  C  R  N  C  G  F  H  I  R  Q  T  S  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0244P17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96032" stop="96121"/>
                    <exon start="96853" stop="96957"/>
                    <exon start="97760" stop="97837"/>
                    <exon start="97928" stop="98461"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>807</number_coding_nucleotides>
                  <number_encoded_amino_acids>269</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CQLYLGVGANTKILQIFFFWYDLFKFMENKDMDLENIKSNLLALRQLYGLLRNDRDGVSNLNSDGLDHEARVMLKNLLDTTTNDLLKAHSEIIAHQAHVHNLPQPQHLVDMVKQRPLALLDMPKSSAVIQSCGNEPVVVEESTLSKEKQESIVPVTQTASVQRPKFSFSASETGNKRKFCRICQRPKFEKAFVPCINTKSSEIEASHSTKVVALQEQQNSLFGSFSRDIQQEALQSLSTESRKPKEVLDLHRISSGAETVASISDRPAN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="100546" PGL_stop="99752"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100546" e_stop="99752"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="100546" e_stop="99752" e_length="795"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100546" stop="99752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603846" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTTCATCATATAGATTTTATAGAATACTATGTTAAAACAATCCGTAATCTTATTCATATAACAATTCTGAATATGCTCCTTGAAATGTGTAATAAGCAGTGATATTAGTCGTTGGCACTTTGAAATTTCCAGCAATTCTAAAGTGAGGTCAAGAACTTTCACTTTTTTCATAAGTAAACAAAGTGGCAATTTCAGATGCCTTACTTCATCTCGGAAAAAGCTTTTGATGGTGTTTCTTATGTGCGGATCCTAGCATGACAGGTGTTTTATTCATACCTCTGTGATGCCTTAGTAGTTGCCACCAACGAAATTTGTTAATCACCTTCTTATTGCTATGTTGTTCTTTGTCTGCTGGTCTACTGCTGCTATGTTTCGACTTCTTTGAATGCTGGATATGTTGCATAAGCCCCCGAGCAAGGGTATGAAATTGGTCCCCCTTCGTCTTTGTTCCAGCTTGCTTGTCGATTGCTGACTTCCCAAACTTTTCCAAAGCCTTTCCTCCATATGTTTCATCCTTGCTTGATGAATAGTGACCGGGGAACCTTTTCCCTCTCTGCCTCAACAAAGATGTCTGTTTCTCCTTAGCTTTATCATCCTTACCATGATGGTGATGGTGGTGATGATGATGGTGAAAAACTATTGCTAGCTTGTCTTTCAATTTCTTCCACCTTCCATTATGTTTCTTTGATTTTTTTGAGTTAGCAGACTTGTAGGCACGTGCAGTACTTGACCTCCTTGATGAAGAATCTGCTGAGTAGTACGAGAGTTCTTCAAGATGGTCAGACCCTGAAGG</gDNA_template>
            <first_frame> C  F  I  I  *  I  L  *  N  T  M  L  K  Q  S  V  I  L  F  I  *  Q  F  *  I  C  S  L  K  C  V  I  S  S  D  I  S  R  W  H  F  E  I  S  S  N  S  K  V  R  S  R  T  F  T  F  F  I  S  K  Q  S  G  N  F  R  C  L  T  S  S  R  K  K  L  L  M  V  F  L  M  C  G  S  *  H  D  R  C  F  I  H  T  S  V  M  P  *  *  L  P  P  T  K  F  V  N  H  L  L  I  A  M  L  F  F  V  C  W  S  T  A  A  M  F  R  L  L  *  M  L  D  M  L  H  K  P  P  S  K  G  M  K  L  V  P  L  R  L  C  S  S  L  L  V  D  C  *  L  P  K  L  F  Q  S  L  S  S  I  C  F  I  L  A  *  *  I  V  T  G  E  P  F  P  S  L  P  Q  Q  R  C  L  F  L  L  S  F  I  I  L  T  M  M  V  M  V  V  M  M  M  V  K  N  Y  C  *  L  V  F  Q  F  L  P  P  S  I  M  F  L  *  F  F  *  V  S  R  L  V  G  T  C  S  T  *  P  P  *  *  R  I  C  *  V  V  R  E  F  F  K  M  V  R  P  *  R </first_frame>
            <second_frame>  A  S  S  Y  R  F  Y  R  I  L  C  *  N  N  P  *  S  Y  S  Y  N  N  S  E  Y  A  P  *  N  V  *  *  A  V  I  L  V  V  G  T  L  K  F  P  A  I  L  K  *  G  Q  E  L  S  L  F  S  *  V  N  K  V  A  I  S  D  A  L  L  H  L  G  K  S  F  *  W  C  F  L  C  A  D  P  S  M  T  G  V  L  F  I  P  L  *  C  L  S  S  C  H  Q  R  N  L  L  I  T  F  L  L  L  C  C  S  L  S  A  G  L  L  L  L  C  F  D  F  F  E  C  W  I  C  C  I  S  P  R  A  R  V  *  N  W  S  P  F  V  F  V  P  A  C  L  S  I  A  D  F  P  N  F  S  K  A  F  P  P  Y  V  S  S  L  L  D  E  *  *  P  G  N  L  F  P  L  C  L  N  K  D  V  C  F  S  L  A  L  S  S  L  P  *  W  *  W  W  *  *  *  W  *  K  T  I  A  S  L  S  F  N  F  F  H  L  P  L  C  F  F  D  F  F  E  L  A  D  L  *  A  R  A  V  L  D  L  L  D  E  E  S  A  E  *  Y  E  S  S  S  R  W  S  D  P  E   </second_frame>
            <third_frame>   L  H  H  I  D  F  I  E  Y  Y  V  K  T  I  R  N  L  I  H  I  T  I  L  N  M  L  L  E  M  C  N  K  Q  *  Y  *  S  L  A  L  *  N  F  Q  Q  F  *  S  E  V  K  N  F  H  F  F  H  K  *  T  K  W  Q  F  Q  M  P  Y  F  I  S  E  K  A  F  D  G  V  S  Y  V  R  I  L  A  *  Q  V  F  Y  S  Y  L  C  D  A  L  V  V  A  T  N  E  I  C  *  S  P  S  Y  C  Y  V  V  L  C  L  L  V  Y  C  C  Y  V  S  T  S  L  N  A  G  Y  V  A  *  A  P  E  Q  G  Y  E  I  G  P  P  S  S  L  F  Q  L  A  C  R  L  L  T  S  Q  T  F  P  K  P  F  L  H  M  F  H  P  C  L  M  N  S  D  R  G  T  F  S  L  S  A  S  T  K  M  S  V  S  P  *  L  Y  H  P  Y  H  D  G  D  G  G  D  D  D  G  E  K  L  L  L  A  C  L  S  I  S  S  T  F  H  Y  V  S  L  I  F  L  S  *  Q  T  C  R  H  V  Q  Y  L  T  S  L  M  K  N  L  L  S  S  T  R  V  L  Q  D  G  Q  T  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0244P17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="103827" PGL_stop="101152"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103827" e_stop="103667"/>
            <exon e_start="101881" e_stop="101766"/>
            <exon e_start="101696" e_stop="101152"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.905" e_score="0.963"/>
          <exon-intron don_prob="0.995" acc_prob="0.936" e_score="1.000"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="103827" e_stop="103667" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.905">
            <gDNA_intron_boundary i_start="103666" i_stop="101882" i_length="1785"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101881" e_stop="101766" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.936">
            <gDNA_intron_boundary i_start="101765" i_stop="101697" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="0.963">
            <gDNA_exon_boundary e_start="101696" e_stop="101152" e_length="545"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103827" stop="103667"/>
              <exon start="101881" stop="101766"/>
              <exon start="101696" stop="101152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576544" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATATTTGGCGGGTTCGATTAGGGTTTCGGAGTCGGAGAATTTTCTAGAGAGATGAGCGCCGTCAACATTACGAACGTCGCCGTACTGGATAATCCGGCACCGTTCCTCAGTCCTTTTCAGTTTGAGATCTCTTACGAGTGCCTCGATGCTCTTAAAGATG : ATTTAGAGTGGAAGCTAACTTATGTGGGATCTGCTGAGGATGATACTTATGACCAGCAACTAGAAAGTGTTTTTGTTGGACCTGTAAATGTTGGGAAATATCGTTTTGTGCTTCAG : GCTGATCCCCCTGAACCATCCAAAATTCGCGAAGAAGATATAATTGGTGTCACAGTATTGCTATTAACATGCTCTTATGTGGGTCAAGAATTTATTCGAGTAGGATACTATGTGAACAATGATTATGATGATGAACAGCTAAAAGAAGAACCGCCTCAGAAGGTTTTGGTTGATAGGATCCAGAGGAATATTTTGGTTGACAAACCTCGAGTCACAAAATTCCCCATTAATTTCCATCCAGAAAACAATGAAGATGGAGAACAAGCTCCTCCTGACAATGCAACAGAAGAAAAGGCGCTTCGAGAAGAACCCGTTTCTTCACCCAAGCAATGTAATGAGCAGTGTCCTCAAACTTGAGAAACAACAAGCAAGACAAACTGCTTTGGCTGTCAAAAAGTTTTCCCTTCAGAGTTTGATATTTCAATGATGTATTGTGCCATCTTGTTATAATCTATAAATCTTTAGTGTTGATGGTATATTTTTAATTTCTGCCTCAACATGTACACACATCAATTGTTGTATCTGCTATGGTCATATCTAGCCGA</gDNA_template>
            <first_frame> Y  I  W  R  V  R  L  G  F  R  S  R  R  I  F  *  R  D  E  R  R  Q  H  Y  E  R  R  R  T  G  *  S  G  T  V  P  Q  S  F  S  V  *  D  L  L  R  V  P  R  C  S  *  R  * :   F  R  V  E  A  N  L  C  G  I  C  *  G  *  Y  L  *  P  A  T  R  K  C  F  C  W  T  C  K  C  W  E  I  S  F  C  A  S   : G  *  S  P  *  T  I  Q  N  S  R  R  R  Y  N  W  C  H  S  I  A  I  N  M  L  L  C  G  S  R  I  Y  S  S  R  I  L  C  E  Q  *  L  *  *  *  T  A  K  R  R  T  A  S  E  G  F  G  *  *  D  P  E  E  Y  F  G  *  Q  T  S  S  H  K  I  P  H  *  F  P  S  R  K  Q  *  R  W  R  T  S  S  S  *  Q  C  N  R  R  K  G  A  S  R  R  T  R  F  F  T  Q  A  M  *  *  A  V  S  S  N  L  R  N  N  K  Q  D  K  L  L  W  L  S  K  S  F  P  F  R  V  *  Y  F  N  D  V  L  C  H  L  V  I  I  Y  K  S  L  V  L  M  V  Y  F  *  F  L  P  Q  H  V  H  T  S  I  V  V  S  A  M  V  I  S  S  R </first_frame>
            <second_frame>  I  F  G  G  F  D  *  G  F  G  V  G  E  F  S  R  E  M  S  A  V  N  I  T  N  V  A  V  L  D  N  P  A  P  F  L  S  P  F  Q  F  E  I  S  Y  E  C  L  D  A  L  K  D   : D  L  E  W  K  L  T  Y  V  G  S  A  E  D  D  T  Y  D  Q  Q  L  E  S  V  F  V  G  P  V  N  V  G  K  Y  R  F  V  L  Q  :  A  D  P  P  E  P  S  K  I  R  E  E  D  I  I  G  V  T  V  L  L  L  T  C  S  Y  V  G  Q  E  F  I  R  V  G  Y  Y  V  N  N  D  Y  D  D  E  Q  L  K  E  E  P  P  Q  K  V  L  V  D  R  I  Q  R  N  I  L  V  D  K  P  R  V  T  K  F  P  I  N  F  H  P  E  N  N  E  D  G  E  Q  A  P  P  D  N  A  T  E  E  K  A  L  R  E  E  P  V  S  S  P  K  Q  C  N  E  Q  C  P  Q  T  *  E  T  T  S  K  T  N  C  F  G  C  Q  K  V  F  P  S  E  F  D  I  S  M  M  Y  C  A  I  L  L  *  S  I  N  L  *  C  *  W  Y  I  F  N  F  C  L  N  M  Y  T  H  Q  L  L  Y  L  L  W  S  Y  L  A   </second_frame>
            <third_frame>   Y  L  A  G  S  I  R  V  S  E  S  E  N  F  L  E  R  *  A  P  S  T  L  R  T  S  P  Y  W  I  I  R  H  R  S  S  V  L  F  S  L  R  S  L  T  S  A  S  M  L  L  K  M  :  I  *  S  G  S  *  L  M  W  D  L  L  R  M  I  L  M  T  S  N  *  K  V  F  L  L  D  L  *  M  L  G  N  I  V  L  C  F  R :   L  I  P  L  N  H  P  K  F  A  K  K  I  *  L  V  S  Q  Y  C  Y  *  H  A  L  M  W  V  K  N  L  F  E  *  D  T  M  *  T  M  I  M  M  M  N  S  *  K  K  N  R  L  R  R  F  W  L  I  G  S  R  G  I  F  W  L  T  N  L  E  S  Q  N  S  P  L  I  S  I  Q  K  T  M  K  M  E  N  K  L  L  L  T  M  Q  Q  K  K  R  R  F  E  K  N  P  F  L  H  P  S  N  V  M  S  S  V  L  K  L  E  K  Q  Q  A  R  Q  T  A  L  A  V  K  K  F  S  L  Q  S  L  I  F  Q  *  C  I  V  P  S  C  Y  N  L  *  I  F  S  V  D  G  I  F  L  I  S  A  S  T  C  T  H  I  N  C  C  I  C  Y  G  H  I  *  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0244P17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103805" stop="103667"/>
                    <exon start="101881" stop="101766"/>
                    <exon start="101696" stop="101340"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFGVGEFSREMSAVNITNVAVLDNPAPFLSPFQFEISYECLDALKDDLEWKLTYVGSAEDDTYDQQLESVFVGPVNVGKYRFVLQADPPEPSKIREEDIIGVTVLLLTCSYVGQEFIRVGYYVNNDYDDEQLKEEPPQKVLVDRIQRNILVDKPRVTKFPINFHPENNEDGEQAPPDNATEEKALREEPVSSPKQCNEQCPQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="121815" PGL_stop="125815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121815" e_stop="122386"/>
            <exon e_start="123375" e_stop="123450"/>
            <exon e_start="123537" e_stop="123625"/>
            <exon e_start="123761" e_stop="123878"/>
            <exon e_start="123964" e_stop="124067"/>
            <exon e_start="124164" e_stop="124322"/>
            <exon e_start="124405" e_stop="124629"/>
            <exon e_start="124726" e_stop="125037"/>
            <exon e_start="125399" e_stop="125815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.868" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121815" e_stop="122386" e_length="572"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="122387" i_stop="123374" i_length="988"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="123375" e_stop="123450" e_length="76"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="123451" i_stop="123536" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="123537" e_stop="123625" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="123626" i_stop="123760" i_length="135"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="123761" e_stop="123878" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.975">
            <gDNA_intron_boundary i_start="123879" i_stop="123963" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="123964" e_stop="124067" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.942" acc_prob="0.991">
            <gDNA_intron_boundary i_start="124068" i_stop="124163" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="124164" e_stop="124322" e_length="159"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="124323" i_stop="124404" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="124405" e_stop="124629" e_length="225"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.868">
            <gDNA_intron_boundary i_start="124630" i_stop="124725" i_length="96"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="124726" e_stop="125037" e_length="312"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="125038" i_stop="125398" i_length="361"/>
          </intron>
          <exon e_serial="9" e_score="0.995">
            <gDNA_exon_boundary e_start="125399" e_stop="125815" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121815" stop="122386"/>
              <exon start="123375" stop="123450"/>
              <exon start="123537" stop="123625"/>
              <exon start="123761" stop="123878"/>
              <exon start="123964" stop="124067"/>
              <exon start="124164" stop="124322"/>
              <exon start="124405" stop="124629"/>
              <exon start="124726" stop="125037"/>
              <exon start="125399" stop="125815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585664" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTGTGTCTACTAATTTCACTAACCCTAGCATTCTCCCTTTCTCTCTCTACACCTCACCTTTCTCTCTCTATAGACCAAACCCTATCAACGCCATGGCGTCACGGAGGCTTATGGCCTCTCTCCTCCGATCAACCGCCCAGCGTGGCGGCGCTATTTCCAGATCTCCATTGGCAAATTCCATCCCTAAAGCTACTTCACGCGCCTCCCCAGCGGGATTCCTCTTAAATCGTGCTGTTAAGTACGCTACCTCAGCTGCTGCTCCGGCTGATAAGTCAGCGACACCTCCTAAGTCCTCTGGTAATGAGCCTACCGGTAAGATCACCGATGAGTTCACTGGCGCTGGTGCGGTCGGTAAAGTGTGCCAGGTTATTGGTGCTGTTGTGGATGTGAGATTCGATGAAGGTTTGCCTCCGATCCTTACTGCTCTTGAGGTTCTGGATAACCAGATCCGTCTTGTGCTTGAGGTTGCTCAGCATTTGGGTGAGAATATGGTTAGGACTATTGCTATGGATGGTACTGAAGGTCTTGTGCGTGGTCAACGCGTCCTTAACACTGGGTCTCCTATCACT : GTCCCTGTCGGTAGGTCCACCCTTGGCCGTATCATGAATGTTATTGGAGAGCCTATTGATGAGAGAGGCGACATTA : CAACCGATCACTTTTTGCCAATTCATCGTGAAGCTCCTGCCTTTGTTGAGCAGGCAACTGAACAACAAATTCTTGTTACTGGTATCAAG : GTTGTTGATCTTCTTGCCCCTTACCAAAGGGGAGGAAAGATTGGGCTTTTTGGTGGTGCTGGTGTGGGAAAGACCGTGCTCATTATGGAACTGATTAACAACGTTGCAAAGGCACATG : GTGGTTTCTCCGTCTTTGCTGGTGTTGGTGAACGTACTCGTGAGGGCAATGATTTGTACAGGGAAATGATTGAAAGTGGTGTTATTAAGCTAGGTGAAAAGCAA : AGTGAAAGCAAGTGCGCTCTTGTATATGGTCAAATGAATGAGCCCCCTGGTGCTCGTGCCCGTGTTGGCCTTACAGGATTGACTGTGGCTGAGCACTTCAGAGATGCTGAGGGGCAGGATGTGCTTCTCTTTATTGACAACATTTTCAGATTTACCCAG : GCTAACTCAGAGGTCTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTCGGTTATCAACCAACTTTGGCTACAGATCTTGGAGGTCTTCAAGAGCGTATCACTACAACCAAGAAAGGTTCTATTACATCTGTCCAGGCTATCTATGTGCCTGCTGATGACTTGACAGATCCTGCCCCTGCAACTACCTTTGCTCACTTGGATGCCACGACTGTGTTGTCCCGTCAA : ATTTCTGAGCTTGGTATTTATCCTGCTGTTGATCCACTTGATTCTACATCTCGTATGCTCTCACCTCACATTTTGGGAGAAGATCATTACAATACTGCTCGTGGGGTACAGAAAGTTCTTCAAAACTACAAGAATCTTCAAGATATTATTGCCATTTTGGGTATGGATGAGCTGAGTGAAGATGATAAGATGACTGTTGCCCGTGCACGTAAGATCCAGAGATTCCTCAGTCAGCCTTTCCATGTTGCTGAAGTTTTCACGGGTGCTCCTGGAAAATATGTTGACTTGAAGGAGAGCATTAACAGTTTCCAG : GGAGTCCTGGACGGGAAATACGATGATCTTTCAGAACAATCATTCTATATGGTCGGTGGAATCGAGGAGGTCATTGCCAAGGCAGAGAAGATTGCCAAGGAATCTGCAGCTTAGATTATTAACTCCAGCAACTTTCTTTCATTATCTTCATCGATAACTACAGAAATAATTTAAGTTTCTGTGACACTGGATTTTTTTTTCCTGGGAGGACTAAGGGGTCCAAGATTTTCTGGTTTTTGTTTTTATATTCAACCCGGAATTGTGATAGGGAAGACATGGAGCTAAGGCCTACTTGCCAAACACCCACCCTTGACGCTCTGTTATGTCGCATAATAAAGGGGGTAAAACGGCAAACTTGTATATTTTACTTTGAATTCATCTTGAGAATGTTGGTTGCCCAAATTATGAGGGATCGTC</gDNA_template>
            <first_frame> K  V  C  L  L  I  S  L  T  L  A  F  S  L  S  L  S  T  P  H  L  S  L  S  I  D  Q  T  L  S  T  P  W  R  H  G  G  L  W  P  L  S  S  D  Q  P  P  S  V  A  A  L  F  P  D  L  H  W  Q  I  P  S  L  K  L  L  H  A  P  P  Q  R  D  S  S  *  I  V  L  L  S  T  L  P  Q  L  L  L  R  L  I  S  Q  R  H  L  L  S  P  L  V  M  S  L  P  V  R  S  P  M  S  S  L  A  L  V  R  S  V  K  C  A  R  L  L  V  L  L  W  M  *  D  S  M  K  V  C  L  R  S  L  L  L  L  R  F  W  I  T  R  S  V  L  C  L  R  L  L  S  I  W  V  R  I  W  L  G  L  L  L  W  M  V  L  K  V  L  C  V  V  N  A  S  L  T  L  G  L  L  S  L :   S  L  S  V  G  P  P  L  A  V  S  *  M  L  L  E  S  L  L  M  R  E  A  T  L  :  Q  P  I  T  F  C  Q  F  I  V  K  L  L  P  L  L  S  R  Q  L  N  N  K  F  L  L  L  V  S  R :   L  L  I  F  L  P  L  T  K  G  E  E  R  L  G  F  L  V  V  L  V  W  E  R  P  C  S  L  W  N  *  L  T  T  L  Q  R  H  M  :  V  V  S  P  S  L  L  V  L  V  N  V  L  V  R  A  M  I  C  T  G  K  *  L  K  V  V  L  L  S  *  V  K  S  K :   V  K  A  S  A  L  L  Y  M  V  K  *  M  S  P  L  V  L  V  P  V  L  A  L  Q  D  *  L  W  L  S  T  S  E  M  L  R  G  R  M  C  F  S  L  L  T  T  F  S  D  L  P  R :   L  T  Q  R  S  L  L  C  L  V  V  S  H  L  L  S  V  I  N  Q  L  W  L  Q  I  L  E  V  F  K  S  V  S  L  Q  P  R  K  V  L  L  H  L  S  R  L  S  M  C  L  L  M  T  *  Q  I  L  P  L  Q  L  P  L  L  T  W  M  P  R  L  C  C  P  V  K :   F  L  S  L  V  F  I  L  L  L  I  H  L  I  L  H  L  V  C  S  H  L  T  F  W  E  K  I  I  T  I  L  L  V  G  Y  R  K  F  F  K  T  T  R  I  F  K  I  L  L  P  F  W  V  W  M  S  *  V  K  M  I  R  *  L  L  P  V  H  V  R  S  R  D  S  S  V  S  L  S  M  L  L  K  F  S  R  V  L  L  E  N  M  L  T  *  R  R  A  L  T  V  S  R :   E  S  W  T  G  N  T  M  I  F  Q  N  N  H  S  I  W  S  V  E  S  R  R  S  L  P  R  Q  R  R  L  P  R  N  L  Q  L  R  L  L  T  P  A  T  F  F  H  Y  L  H  R  *  L  Q  K  *  F  K  F  L  *  H  W  I  F  F  S  W  E  D  *  G  V  Q  D  F  L  V  F  V  F  I  F  N  P  E  L  *  *  G  R  H  G  A  K  A  Y  L  P  N  T  H  P  *  R  S  V  M  S  H  N  K  G  G  K  T  A  N  L  Y  I  L  L  *  I  H  L  E  N  V  G  C  P  N  Y  E  G  S   </first_frame>
            <second_frame>  K  C  V  Y  *  F  H  *  P  *  H  S  P  F  L  S  L  H  L  T  F  L  S  L  *  T  K  P  Y  Q  R  H  G  V  T  E  A  Y  G  L  S  P  P  I  N  R  P  A  W  R  R  Y  F  Q  I  S  I  G  K  F  H  P  *  S  Y  F  T  R  L  P  S  G  I  P  L  K  S  C  C  *  V  R  Y  L  S  C  C  S  G  *  *  V  S  D  T  S  *  V  L  W  *  *  A  Y  R  *  D  H  R  *  V  H  W  R  W  C  G  R  *  S  V  P  G  Y  W  C  C  C  G  C  E  I  R  *  R  F  A  S  D  P  Y  C  S  *  G  S  G  *  P  D  P  S  C  A  *  G  C  S  A  F  G  *  E  Y  G  *  D  Y  C  Y  G  W  Y  *  R  S  C  A  W  S  T  R  P  *  H  W  V  S  Y  H   : C  P  C  R  *  V  H  P  W  P  Y  H  E  C  Y  W  R  A  Y  *  *  E  R  R  H  Y :   N  R  S  L  F  A  N  S  S  *  S  S  C  L  C  *  A  G  N  *  T  T  N  S  C  Y  W  Y  Q   : G  C  *  S  S  C  P  L  P  K  G  R  K  D  W  A  F  W  W  C  W  C  G  K  D  R  A  H  Y  G  T  D  *  Q  R  C  K  G  T  W :   W  F  L  R  L  C  W  C  W  *  T  Y  S  *  G  Q  *  F  V  Q  G  N  D  *  K  W  C  Y  *  A  R  *  K  A   : K  *  K  Q  V  R  S  C  I  W  S  N  E  *  A  P  W  C  S  C  P  C  W  P  Y  R  I  D  C  G  *  A  L  Q  R  C  *  G  A  G  C  A  S  L  Y  *  Q  H  F  Q  I  Y  P   : G  *  L  R  G  L  C  F  A  W  S  Y  P  I  C  C  R  L  S  T  N  F  G  Y  R  S  W  R  S  S  R  A  Y  H  Y  N  Q  E  R  F  Y  Y  I  C  P  G  Y  L  C  A  C  *  *  L  D  R  S  C  P  C  N  Y  L  C  S  L  G  C  H  D  C  V  V  P  S   : N  F  *  A  W  Y  L  S  C  C  *  S  T  *  F  Y  I  S  Y  A  L  T  S  H  F  G  R  R  S  L  Q  Y  C  S  W  G  T  E  S  S  S  K  L  Q  E  S  S  R  Y  Y  C  H  F  G  Y  G  *  A  E  *  R  *  *  D  D  C  C  P  C  T  *  D  P  E  I  P  Q  S  A  F  P  C  C  *  S  F  H  G  C  S  W  K  I  C  *  L  E  G  E  H  *  Q  F  P   : G  S  P  G  R  E  I  R  *  S  F  R  T  I  I  L  Y  G  R  W  N  R  G  G  H  C  Q  G  R  E  D  C  Q  G  I  C  S  L  D  Y  *  L  Q  Q  L  S  F  I  I  F  I  D  N  Y  R  N  N  L  S  F  C  D  T  G  F  F  F  P  G  R  T  K  G  S  K  I  F  W  F  L  F  L  Y  S  T  R  N  C  D  R  E  D  M  E  L  R  P  T  C  Q  T  P  T  L  D  A  L  L  C  R  I  I  K  G  V  K  R  Q  T  C  I  F  Y  F  E  F  I  L  R  M  L  V  A  Q  I  M  R  D  R  </second_frame>
            <third_frame>   S  V  S  T  N  F  T  N  P  S  I  L  P  F  S  L  Y  T  S  P  F  S  L  Y  R  P  N  P  I  N  A  M  A  S  R  R  L  M  A  S  L  L  R  S  T  A  Q  R  G  G  A  I  S  R  S  P  L  A  N  S  I  P  K  A  T  S  R  A  S  P  A  G  F  L  L  N  R  A  V  K  Y  A  T  S  A  A  A  P  A  D  K  S  A  T  P  P  K  S  S  G  N  E  P  T  G  K  I  T  D  E  F  T  G  A  G  A  V  G  K  V  C  Q  V  I  G  A  V  V  D  V  R  F  D  E  G  L  P  P  I  L  T  A  L  E  V  L  D  N  Q  I  R  L  V  L  E  V  A  Q  H  L  G  E  N  M  V  R  T  I  A  M  D  G  T  E  G  L  V  R  G  Q  R  V  L  N  T  G  S  P  I  T  :  V  P  V  G  R  S  T  L  G  R  I  M  N  V  I  G  E  P  I  D  E  R  G  D  I   : T  T  D  H  F  L  P  I  H  R  E  A  P  A  F  V  E  Q  A  T  E  Q  Q  I  L  V  T  G  I  K  :  V  V  D  L  L  A  P  Y  Q  R  G  G  K  I  G  L  F  G  G  A  G  V  G  K  T  V  L  I  M  E  L  I  N  N  V  A  K  A  H   : G  G  F  S  V  F  A  G  V  G  E  R  T  R  E  G  N  D  L  Y  R  E  M  I  E  S  G  V  I  K  L  G  E  K  Q  :  S  E  S  K  C  A  L  V  Y  G  Q  M  N  E  P  P  G  A  R  A  R  V  G  L  T  G  L  T  V  A  E  H  F  R  D  A  E  G  Q  D  V  L  L  F  I  D  N  I  F  R  F  T  Q  :  A  N  S  E  V  S  A  L  L  G  R  I  P  S  A  V  G  Y  Q  P  T  L  A  T  D  L  G  G  L  Q  E  R  I  T  T  T  K  K  G  S  I  T  S  V  Q  A  I  Y  V  P  A  D  D  L  T  D  P  A  P  A  T  T  F  A  H  L  D  A  T  T  V  L  S  R  Q  :  I  S  E  L  G  I  Y  P  A  V  D  P  L  D  S  T  S  R  M  L  S  P  H  I  L  G  E  D  H  Y  N  T  A  R  G  V  Q  K  V  L  Q  N  Y  K  N  L  Q  D  I  I  A  I  L  G  M  D  E  L  S  E  D  D  K  M  T  V  A  R  A  R  K  I  Q  R  F  L  S  Q  P  F  H  V  A  E  V  F  T  G  A  P  G  K  Y  V  D  L  K  E  S  I  N  S  F  Q  :  G  V  L  D  G  K  Y  D  D  L  S  E  Q  S  F  Y  M  V  G  G  I  E  E  V  I  A  K  A  E  K  I  A  K  E  S  A  A  *  I  I  N  S  S  N  F  L  S  L  S  S  S  I  T  T  E  I  I  *  V  S  V  T  L  D  F  F  F  L  G  G  L  R  G  P  R  F  S  G  F  C  F  Y  I  Q  P  G  I  V  I  G  K  T  W  S  *  G  L  L  A  K  H  P  P  L  T  L  C  Y  V  A  *  *  R  G  *  N  G  K  L  V  Y  F  T  L  N  S  S  *  E  C  W  L  P  K  L  *  G  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0244P17.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121817" stop="122386"/>
                    <exon start="123375" stop="123450"/>
                    <exon start="123537" stop="123625"/>
                    <exon start="123761" stop="123878"/>
                    <exon start="123964" stop="124067"/>
                    <exon start="124164" stop="124322"/>
                    <exon start="124405" stop="124629"/>
                    <exon start="124726" stop="125037"/>
                    <exon start="125399" stop="125512"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1764</number_coding_nucleotides>
                  <number_encoded_amino_acids>588</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVSTNFTNPSILPFSLYTSPFSLYRPNPINAMASRRLMASLLRSTAQRGGAISRSPLANSIPKATSRASPAGFLLNRAVKYATSAAAPADKSATPPKSSGNEPTGKITDEFTGAGAVGKVCQVIGAVVDVRFDEGLPPILTALEVLDNQIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRSTLGRIMNVIGEPIDERGDITTDHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKMTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKESINSFQGVLDGKYDDLSEQSFYMVGGIEEVIAKAEKIAKESAA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0244P17.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125521" stop="125814"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQQLSFIIFIDNYRNNLSFCDTGFFFPGRTKGSKIFWFLFLYSTRNCDREDMELRPTCQTPTLDALLCRIIKGVKRQTCIFYFEFILRMLVAQIMRDR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="126304" PGL_stop="131068"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126304" e_stop="126962"/>
            <exon e_start="127811" e_stop="127910"/>
            <exon e_start="128020" e_stop="128115"/>
            <exon e_start="128211" e_stop="128291"/>
            <exon e_start="130761" e_stop="131068"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.862" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="126304" e_stop="126962" e_length="659"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.965">
            <gDNA_intron_boundary i_start="126963" i_stop="127810" i_length="848"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127811" e_stop="127910" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.995">
            <gDNA_intron_boundary i_start="127911" i_stop="128019" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128020" e_stop="128115" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="128116" i_stop="128210" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="128211" e_stop="128291" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.862">
            <gDNA_intron_boundary i_start="128292" i_stop="130760" i_length="2469"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="130761" e_stop="131068" e_length="308"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126304" stop="126962"/>
              <exon start="127811" stop="127910"/>
              <exon start="128020" stop="128115"/>
              <exon start="128211" stop="128291"/>
              <exon start="130761" stop="131068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580858" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCGCCGTATTCTCTAGCCTCTCCACTCTTCTCGGCGGCGCTTTCTAGTTTCTATGATTCTTCCTTCTCACCATATAATTGGAAAAAAAAATGTCAATCCTTTCTCTCTCCTTTTCTCCATTTCCAAATTCATCTCTCTCTCATCTCAGTTCCCATGCTCCCTCCCGTATCCAATCACTCCATCCTTCTTCATCCATGACCCTCCTCAAACCTCTCCACCACCATCTCCGTCGCCGTCTCTCCATCTCCGCCGCCGCAGCCGTCCGTCAAGACACTAATCTCTGGACAACCGCGCCTCTCGTCACTGTTTCACCTGCCGCGGAATCTCTCTTCCACGTCACCATCGACGTGTCCGATTACCCAGACCTAGCTAACTCACACACCAAGGCAGGTCAATATCTTCAGCTTCGGATTCCTGACGTGGAGAAACCGTCGTTTTTAGCGATTGCATCTCCGCCTTCGCTTGCTGCAGCGAAAGGTGTGTTTGAGTTCCTTGTGAAAAGTATTTCTGGCTCTACGGCGGAGCTACTATGTGGATTGCAGAAAGGGGATGTTGTGGAGTTGAGTCAGGTTATGGGGAAAGGATTTGACTTGGATCAAATCTCTCCTGCGGAGGAGTATCAGACGGTCGTGATTTTTGCAACCGGATCTGGAATCAG : CCCAATTAGATCCCTGATTGAGGCAGGGTTTGGTGCAGACAGGAGATCTGATGTTCGGGTATATTATGGTGCACGGAATTTGAAGAGAATGGCATATCAG : GATAGGTTTGAAAACTGGGCATCCTCTGGGGTTAAGGTTGTGCCAGTGTTGTCTCAGCCTGATGATGCTTGGAAAGGTGAAGACGGCTATGTTCAG : GCAGCATTTGCCCGAGCTAAAAACATTTTTAATCCTCAATCCACCGGAGCAGTCCTCTGTGGTCAAAAGCAAATGGCTGAG : GAGGTGACTTCTCTTCTTGTAGCAGATGGAGTCTCAACCGAGAAGATTCTGAAGAACTTCTGAACAATTCCAATTTTGGTTCGTCGTGTTGTATTATTGTCTAGTATAAAATCAATTTATTCGATTTCACCTGCTGGCTTCAAGGTATTCAGCATGGTCAAACAACATAATGTAACAATGTTAGCCATCAGCCATCAGGCTATACAAAGTCCAATGTGGCTCGTATATGCATTCAATCAAAATTAATTGTTGAATAGTCAGTACTAAAGAAGGAAAACGCTATAATACCACTGTTCTTGTTTTTGTTT</gDNA_template>
            <first_frame> A  A  V  F  S  S  L  S  T  L  L  G  G  A  F  *  F  L  *  F  F  L  L  T  I  *  L  E  K  K  M  S  I  L  S  L  S  F  S  P  F  P  N  S  S  L  S  H  L  S  S  H  A  P  S  R  I  Q  S  L  H  P  S  S  S  M  T  L  L  K  P  L  H  H  H  L  R  R  R  L  S  I  S  A  A  A  A  V  R  Q  D  T  N  L  W  T  T  A  P  L  V  T  V  S  P  A  A  E  S  L  F  H  V  T  I  D  V  S  D  Y  P  D  L  A  N  S  H  T  K  A  G  Q  Y  L  Q  L  R  I  P  D  V  E  K  P  S  F  L  A  I  A  S  P  P  S  L  A  A  A  K  G  V  F  E  F  L  V  K  S  I  S  G  S  T  A  E  L  L  C  G  L  Q  K  G  D  V  V  E  L  S  Q  V  M  G  K  G  F  D  L  D  Q  I  S  P  A  E  E  Y  Q  T  V  V  I  F  A  T  G  S  G  I  S :   P  I  R  S  L  I  E  A  G  F  G  A  D  R  R  S  D  V  R  V  Y  Y  G  A  R  N  L  K  R  M  A  Y  Q  :  D  R  F  E  N  W  A  S  S  G  V  K  V  V  P  V  L  S  Q  P  D  D  A  W  K  G  E  D  G  Y  V  Q  :  A  A  F  A  R  A  K  N  I  F  N  P  Q  S  T  G  A  V  L  C  G  Q  K  Q  M  A  E  :  E  V  T  S  L  L  V  A  D  G  V  S  T  E  K  I  L  K  N  F  *  T  I  P  I  L  V  R  R  V  V  L  L  S  S  I  K  S  I  Y  S  I  S  P  A  G  F  K  V  F  S  M  V  K  Q  H  N  V  T  M  L  A  I  S  H  Q  A  I  Q  S  P  M  W  L  V  Y  A  F  N  Q  N  *  L  L  N  S  Q  Y  *  R  R  K  T  L  *  Y  H  C  S  C  F  C   </first_frame>
            <second_frame>  P  P  Y  S  L  A  S  P  L  F  S  A  A  L  S  S  F  Y  D  S  S  F  S  P  Y  N  W  K  K  K  C  Q  S  F  L  S  P  F  L  H  F  Q  I  H  L  S  L  I  S  V  P  M  L  P  P  V  S  N  H  S  I  L  L  H  P  *  P  S  S  N  L  S  T  T  I  S  V  A  V  S  P  S  P  P  P  Q  P  S  V  K  T  L  I  S  G  Q  P  R  L  S  S  L  F  H  L  P  R  N  L  S  S  T  S  P  S  T  C  P  I  T  Q  T  *  L  T  H  T  P  R  Q  V  N  I  F  S  F  G  F  L  T  W  R  N  R  R  F  *  R  L  H  L  R  L  R  L  L  Q  R  K  V  C  L  S  S  L  *  K  V  F  L  A  L  R  R  S  Y  Y  V  D  C  R  K  G  M  L  W  S  *  V  R  L  W  G  K  D  L  T  W  I  K  S  L  L  R  R  S  I  R  R  S  *  F  L  Q  P  D  L  E  S   : A  Q  L  D  P  *  L  R  Q  G  L  V  Q  T  G  D  L  M  F  G  Y  I  M  V  H  G  I  *  R  E  W  H  I  R :   I  G  L  K  T  G  H  P  L  G  L  R  L  C  Q  C  C  L  S  L  M  M  L  G  K  V  K  T  A  M  F  R :   Q  H  L  P  E  L  K  T  F  L  I  L  N  P  P  E  Q  S  S  V  V  K  S  K  W  L  R :   R  *  L  L  F  L  *  Q  M  E  S  Q  P  R  R  F  *  R  T  S  E  Q  F  Q  F  W  F  V  V  L  Y  Y  C  L  V  *  N  Q  F  I  R  F  H  L  L  A  S  R  Y  S  A  W  S  N  N  I  M  *  Q  C  *  P  S  A  I  R  L  Y  K  V  Q  C  G  S  Y  M  H  S  I  K  I  N  C  *  I  V  S  T  K  E  G  K  R  Y  N  T  T  V  L  V  F  V  </second_frame>
            <third_frame>   R  R  I  L  *  P  L  H  S  S  R  R  R  F  L  V  S  M  I  L  P  S  H  H  I  I  G  K  K  N  V  N  P  F  S  L  L  F  S  I  S  K  F  I  S  L  S  S  Q  F  P  C  S  L  P  Y  P  I  T  P  S  F  F  I  H  D  P  P  Q  T  S  P  P  P  S  P  S  P  S  L  H  L  R  R  R  S  R  P  S  R  H  *  S  L  D  N  R  A  S  R  H  C  F  T  C  R  G  I  S  L  P  R  H  H  R  R  V  R  L  P  R  P  S  *  L  T  H  Q  G  R  S  I  S  S  A  S  D  S  *  R  G  E  T  V  V  F  S  D  C  I  S  A  F  A  C  C  S  E  R  C  V  *  V  P  C  E  K  Y  F  W  L  Y  G  G  A  T  M  W  I  A  E  R  G  C  C  G  V  E  S  G  Y  G  E  R  I  *  L  G  S  N  L  S  C  G  G  V  S  D  G  R  D  F  C  N  R  I  W  N  Q  :  P  N  *  I  P  D  *  G  R  V  W  C  R  Q  E  I  *  C  S  G  I  L  W  C  T  E  F  E  E  N  G  I  S   : G  *  V  *  K  L  G  I  L  W  G  *  G  C  A  S  V  V  S  A  *  *  C  L  E  R  *  R  R  L  C  S   : G  S  I  C  P  S  *  K  H  F  *  S  S  I  H  R  S  S  P  L  W  S  K  A  N  G  *   : G  G  D  F  S  S  C  S  R  W  S  L  N  R  E  D  S  E  E  L  L  N  N  S  N  F  G  S  S  C  C  I  I  V  *  Y  K  I  N  L  F  D  F  T  C  W  L  Q  G  I  Q  H  G  Q  T  T  *  C  N  N  V  S  H  Q  P  S  G  Y  T  K  S  N  V  A  R  I  C  I  Q  S  K  L  I  V  E  *  S  V  L  K  K  E  N  A  I  I  P  L  F  L  F  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0244P17.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126382" stop="126962"/>
                    <exon start="127811" stop="127910"/>
                    <exon start="128020" stop="128115"/>
                    <exon start="128211" stop="128291"/>
                    <exon start="130761" stop="130823"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>918</number_coding_nucleotides>
                  <number_encoded_amino_acids>306</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEKKMSILSLSFSPFPNSSLSHLSSHAPSRIQSLHPSSSMTLLKPLHHHLRRRLSISAAAAVRQDTNLWTTAPLVTVSPAAESLFHVTIDVSDYPDLANSHTKAGQYLQLRIPDVEKPSFLAIASPPSLAAAKGVFEFLVKSISGSTAELLCGLQKGDVVELSQVMGKGFDLDQISPAEEYQTVVIFATGSGISPIRSLIEAGFGADRRSDVRVYYGARNLKRMAYQDRFENWASSGVKVVPVLSQPDDAWKGEDGYVQAAFARAKNIFNPQSTGAVLCGQKQMAEEVTSLLVADGVSTEKILKNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="137854" PGL_stop="132958"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="137854" e_stop="137781"/>
            <exon e_start="135237" e_stop="135162"/>
            <exon e_start="134161" e_stop="132958"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.382" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="137854" e_stop="137781" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="137780" i_stop="135238" i_length="2543"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="135237" e_stop="135162" e_length="76"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.382">
            <gDNA_intron_boundary i_start="135161" i_stop="134162" i_length="1000"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="134161" e_stop="132958" e_length="1204"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137854" stop="137781"/>
              <exon start="135237" stop="135162"/>
              <exon start="134161" stop="132958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571809" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCATATCAACGAGTCAAAGCTCTTCTCCCTTTTCAACAAATCTTCTCATTTTTCTCCTTTTCTGGTTCCTCAG : ATTCTTTGAGGAAGTTGGTAGGGGGGTGATTTGAGCTAGAGATCGGTCTTTTGGCTATCTGTTTCGTCGTTATAAG : AGATTTGTTTGTCTCTTACATCTGGATGGATGCCAAGAAGTTTATGCAGTTGGTCGAGGAGAAGAAGAAGAGAGCTCTTGAGAAGAAAGAAGGCCACTTGAAATGGGAGCAAAAACTTGAAGCTTCAGCTAAAGGGAAGTCTGATGCTGAAGCTGGAGAGAAAACCAAGGCAGCTAAGCATAAAAGGAAATCTGTCTCGGGGTCTGATAGTGGGAGTGACACTGACAGTGAGTATGAAAAGAAAAAATCCACGAGAAAGTCCCATAAGAAGCACAGGAAGCACCATAGCTCAGATTTGGTTGATTTGGATAGGAAGGACAAGAAGTCCAAGCGGAAGCCGAAGAGAAGGTCCTCTGATTCCAGTGATGATAGCTGTAGGGAATATGATGGTAATTTAGAAGAAGATAGAAGAAGAAAGAAGCGCGGCCACAAGAAGCATAGGCATCATGATAGATACTCTGATTCCTCCGACTCTTCAGATGATGAAGACGTGGGAAGAAAACACCATTCAAAGCATCACAAACGTCATCGACGATCACAACCGAATGAATCAGAGTCTTCCAGTGATGATGACCATGTTGCAGCTAGGAAACGAAGCAACTCAAAGCATCATAAACGTCATGGGAGGTTGGACTCAGATGCTTCTGTCTCTTCTAGCGATGAAGAAAAAGTGAACCGTCGTAATCATGGAAAACACAAGAAACGTCATCACAGACCCCATAGTCACGACTCAAGGTCTTCGGATCCTGAAGATTTTAGGCATGAGAGAAGTAGATTCTTTGGTAAATCTTCTGATGAGAATGAGGAATTAGATAGAAAAGATAAGCACAGTAAGAATCATCATCGACATGGTCATCACCATCCCAACCATACGCATCGCCACTCAGTTGAAGTGTCGAAGGACAACCATCAACCTCATGACAGAAAGGAAAGAAATGGCGAGCGAGTAGACCATACTTCTGAGGTGCTCAATGTAAGTGATAACAGTGGTGCTCGTGTGACACAAAATGCTTAGAATGCTACCCAATTTATGTTAATTTTCCATTTTGTGGAGACTTAAATGGCCAAGGCCATTGGAGTTTTACAGTTGGACTGTAATATTCATCTAAAACCCATATTTCCTACTGTTGAATCTTTAAAGTGACTATAGCACATTTGTGCCATTAATGATTCTACTGTGTATTAACAAGAAGTATAATTTCGT</gDNA_template>
            <first_frame> L  I  S  T  S  Q  S  S  S  P  F  S  T  N  L  L  I  F  L  L  F  W  F  L  R :   F  F  E  E  V  G  R  G  V  I  *  A  R  D  R  S  F  G  Y  L  F  R  R  Y  K  :  R  F  V  C  L  L  H  L  D  G  C  Q  E  V  Y  A  V  G  R  G  E  E  E  E  S  S  *  E  E  R  R  P  L  E  M  G  A  K  T  *  S  F  S  *  R  E  V  *  C  *  S  W  R  E  N  Q  G  S  *  A  *  K  E  I  C  L  G  V  *  *  W  E  *  H  *  Q  *  V  *  K  E  K  I  H  E  K  V  P  *  E  A  Q  E  A  P  *  L  R  F  G  *  F  G  *  E  G  Q  E  V  Q  A  E  A  E  E  K  V  L  *  F  Q  *  *  *  L  *  G  I  *  W  *  F  R  R  R  *  K  K  K  E  A  R  P  Q  E  A  *  A  S  *  *  I  L  *  F  L  R  L  F  R  *  *  R  R  G  K  K  T  P  F  K  A  S  Q  T  S  S  T  I  T  T  E  *  I  R  V  F  Q  *  *  *  P  C  C  S  *  E  T  K  Q  L  K  A  S  *  T  S  W  E  V  G  L  R  C  F  C  L  F  *  R  *  R  K  S  E  P  S  *  S  W  K  T  Q  E  T  S  S  Q  T  P  *  S  R  L  K  V  F  G  S  *  R  F  *  A  *  E  K  *  I  L  W  *  I  F  *  *  E  *  G  I  R  *  K  R  *  A  Q  *  E  S  S  S  T  W  S  S  P  S  Q  P  Y  A  S  P  L  S  *  S  V  E  G  Q  P  S  T  S  *  Q  K  G  K  K  W  R  A  S  R  P  Y  F  *  G  A  Q  C  K  *  *  Q  W  C  S  C  D  T  K  C  L  E  C  Y  P  I  Y  V  N  F  P  F  C  G  D  L  N  G  Q  G  H  W  S  F  T  V  G  L  *  Y  S  S  K  T  H  I  S  Y  C  *  I  F  K  V  T  I  A  H  L  C  H  *  *  F  Y  C  V  L  T  R  S  I  I  S  </first_frame>
            <second_frame>  S  Y  Q  R  V  K  A  L  L  P  F  Q  Q  I  F  S  F  F  S  F  S  G  S  S   : D  S  L  R  K  L  V  G  G  *  F  E  L  E  I  G  L  L  A  I  C  F  V  V  I  R :   D  L  F  V  S  Y  I  W  M  D  A  K  K  F  M  Q  L  V  E  E  K  K  K  R  A  L  E  K  K  E  G  H  L  K  W  E  Q  K  L  E  A  S  A  K  G  K  S  D  A  E  A  G  E  K  T  K  A  A  K  H  K  R  K  S  V  S  G  S  D  S  G  S  D  T  D  S  E  Y  E  K  K  K  S  T  R  K  S  H  K  K  H  R  K  H  H  S  S  D  L  V  D  L  D  R  K  D  K  K  S  K  R  K  P  K  R  R  S  S  D  S  S  D  D  S  C  R  E  Y  D  G  N  L  E  E  D  R  R  R  K  K  R  G  H  K  K  H  R  H  H  D  R  Y  S  D  S  S  D  S  S  D  D  E  D  V  G  R  K  H  H  S  K  H  H  K  R  H  R  R  S  Q  P  N  E  S  E  S  S  S  D  D  D  H  V  A  A  R  K  R  S  N  S  K  H  H  K  R  H  G  R  L  D  S  D  A  S  V  S  S  S  D  E  E  K  V  N  R  R  N  H  G  K  H  K  K  R  H  H  R  P  H  S  H  D  S  R  S  S  D  P  E  D  F  R  H  E  R  S  R  F  F  G  K  S  S  D  E  N  E  E  L  D  R  K  D  K  H  S  K  N  H  H  R  H  G  H  H  H  P  N  H  T  H  R  H  S  V  E  V  S  K  D  N  H  Q  P  H  D  R  K  E  R  N  G  E  R  V  D  H  T  S  E  V  L  N  V  S  D  N  S  G  A  R  V  T  Q  N  A  *  N  A  T  Q  F  M  L  I  F  H  F  V  E  T  *  M  A  K  A  I  G  V  L  Q  L  D  C  N  I  H  L  K  P  I  F  P  T  V  E  S  L  K  *  L  *  H  I  C  A  I  N  D  S  T  V  Y  *  Q  E  V  *  F  R </second_frame>
            <third_frame>   H  I  N  E  S  K  L  F  S  L  F  N  K  S  S  H  F  S  P  F  L  V  P  Q  :  I  L  *  G  S  W  *  G  G  D  L  S  *  R  S  V  F  W  L  S  V  S  S  L  *   : E  I  C  L  S  L  T  S  G  W  M  P  R  S  L  C  S  W  S  R  R  R  R  R  E  L  L  R  R  K  K  A  T  *  N  G  S  K  N  L  K  L  Q  L  K  G  S  L  M  L  K  L  E  R  K  P  R  Q  L  S  I  K  G  N  L  S  R  G  L  I  V  G  V  T  L  T  V  S  M  K  R  K  N  P  R  E  S  P  I  R  S  T  G  S  T  I  A  Q  I  W  L  I  W  I  G  R  T  R  S  P  S  G  S  R  R  E  G  P  L  I  P  V  M  I  A  V  G  N  M  M  V  I  *  K  K  I  E  E  E  R  S  A  A  T  R  S  I  G  I  M  I  D  T  L  I  P  P  T  L  Q  M  M  K  T  W  E  E  N  T  I  Q  S  I  T  N  V  I  D  D  H  N  R  M  N  Q  S  L  P  V  M  M  T  M  L  Q  L  G  N  E  A  T  Q  S  I  I  N  V  M  G  G  W  T  Q  M  L  L  S  L  L  A  M  K  K  K  *  T  V  V  I  M  E  N  T  R  N  V  I  T  D  P  I  V  T  T  Q  G  L  R  I  L  K  I  L  G  M  R  E  V  D  S  L  V  N  L  L  M  R  M  R  N  *  I  E  K  I  S  T  V  R  I  I  I  D  M  V  I  T  I  P  T  I  R  I  A  T  Q  L  K  C  R  R  T  T  I  N  L  M  T  E  R  K  E  M  A  S  E  *  T  I  L  L  R  C  S  M  *  V  I  T  V  V  L  V  *  H  K  M  L  R  M  L  P  N  L  C  *  F  S  I  L  W  R  L  K  W  P  R  P  L  E  F  Y  S  W  T  V  I  F  I  *  N  P  Y  F  L  L  L  N  L  *  S  D  Y  S  T  F  V  P  L  M  I  L  L  C  I  N  K  K  Y  N  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0244P17.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135208" stop="135162"/>
                    <exon start="134161" stop="133147"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1059</number_coding_nucleotides>
                  <number_encoded_amino_acids>353</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FELEIGLLAICFVVIRDLFVSYIWMDAKKFMQLVEEKKKRALEKKEGHLKWEQKLEASAKGKSDAEAGEKTKAAKHKRKSVSGSDSGSDTDSEYEKKKSTRKSHKKHRKHHSSDLVDLDRKDKKSKRKPKRRSSDSSDDSCREYDGNLEEDRRRKKRGHKKHRHHDRYSDSSDSSDDEDVGRKHHSKHHKRHRRSQPNESESSSDDDHVAARKRSNSKHHKRHGRLDSDASVSSSDEEKVNRRNHGKHKKRHHRPHSHDSRSSDPEDFRHERSRFFGKSSDENEELDRKDKHSKNHHRHGHHHPNHTHRHSVEVSKDNHQPHDRKERNGERVDHTSEVLNVSDNSGARVTQNA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="134811" e_stop="134129"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="134811" e_stop="134129" e_length="683"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134811" stop="134129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTTTAGCATCTGATTGATGAGTTCTTTAGTGCTAATTAGCTAGATAGAGATGCAAATAAGTGTAAACCAATGACAATGATGAATATGAAATATATGTTGTGTTGCATCATTATTAGTGCTTGGCTTGGTGGTTGGTAACTTTAATGTTTGCAACTATTTGTCATATGTGTATTCAGCGTTATGCTCAAATAATGATAAAGAATCTGTTACTTAAAGGACATTATTAGTCTAATTGCTCTTAGATATGAGATTTAGAACCTGTGACATATCTGGTTTGATAAAATATCACAGTAATAAATTATTTTTGCATATCATTAATGAATGTGGATTCCTGGTTTGATACCATATTGCAGTTAAATTTATTTATAGCCTGAAGTCCTTTGTGAATCATTTTCCTAAATCGTCCACATTTCTTACTGTCCCTTGGGTAGATCTATTTTGGATAATAGCCTGATCACATATGCATGTTCAAACTCTCCGCATGGGCATTTGCCTTTAAATTGATTGTCCTTTGTTCAATTTGAAGTAAATTTACTCTCATACAAACAAGCTCTGATTAATGGTGGACATTAGTGGTGGAAGAACTAACATTGTTTCCTTTCTCTTCTTTGAGATGCACTTCTGGTCATCATCATACCAAAATGCAGAGATTTGTTTGTCTCTTACATCTGGATGGATGC</gDNA_template>
            <first_frame> K  F  *  H  L  I  D  E  F  F  S  A  N  *  L  D  R  D  A  N  K  C  K  P  M  T  M  M  N  M  K  Y  M  L  C  C  I  I  I  S  A  W  L  G  G  W  *  L  *  C  L  Q  L  F  V  I  C  V  F  S  V  M  L  K  *  *  *  R  I  C  Y  L  K  D  I  I  S  L  I  A  L  R  Y  E  I  *  N  L  *  H  I  W  F  D  K  I  S  Q  *  *  I  I  F  A  Y  H  *  *  M  W  I  P  G  L  I  P  Y  C  S  *  I  Y  L  *  P  E  V  L  C  E  S  F  S  *  I  V  H  I  S  Y  C  P  L  G  R  S  I  L  D  N  S  L  I  T  Y  A  C  S  N  S  P  H  G  H  L  P  L  N  *  L  S  F  V  Q  F  E  V  N  L  L  S  Y  K  Q  A  L  I  N  G  G  H  *  W  W  K  N  *  H  C  F  L  S  L  L  *  D  A  L  L  V  I  I  I  P  K  C  R  D  L  F  V  S  Y  I  W  M  D   </first_frame>
            <second_frame>  N  F  S  I  *  L  M  S  S  L  V  L  I  S  *  I  E  M  Q  I  S  V  N  Q  *  Q  *  *  I  *  N  I  C  C  V  A  S  L  L  V  L  G  L  V  V  G  N  F  N  V  C  N  Y  L  S  Y  V  Y  S  A  L  C  S  N  N  D  K  E  S  V  T  *  R  T  L  L  V  *  L  L  L  D  M  R  F  R  T  C  D  I  S  G  L  I  K  Y  H  S  N  K  L  F  L  H  I  I  N  E  C  G  F  L  V  *  Y  H  I  A  V  K  F  I  Y  S  L  K  S  F  V  N  H  F  P  K  S  S  T  F  L  T  V  P  W  V  D  L  F  W  I  I  A  *  S  H  M  H  V  Q  T  L  R  M  G  I  C  L  *  I  D  C  P  L  F  N  L  K  *  I  Y  S  H  T  N  K  L  *  L  M  V  D  I  S  G  G  R  T  N  I  V  S  F  L  F  F  E  M  H  F  W  S  S  S  Y  Q  N  A  E  I  C  L  S  L  T  S  G  W  M  </second_frame>
            <third_frame>   I  L  A  S  D  *  *  V  L  *  C  *  L  A  R  *  R  C  K  *  V  *  T  N  D  N  D  E  Y  E  I  Y  V  V  L  H  H  Y  *  C  L  A  W  W  L  V  T  L  M  F  A  T  I  C  H  M  C  I  Q  R  Y  A  Q  I  M  I  K  N  L  L  L  K  G  H  Y  *  S  N  C  S  *  I  *  D  L  E  P  V  T  Y  L  V  *  *  N  I  T  V  I  N  Y  F  C  I  S  L  M  N  V  D  S  W  F  D  T  I  L  Q  L  N  L  F  I  A  *  S  P  L  *  I  I  F  L  N  R  P  H  F  L  L  S  L  G  *  I  Y  F  G  *  *  P  D  H  I  C  M  F  K  L  S  A  W  A  F  A  F  K  L  I  V  L  C  S  I  *  S  K  F  T  L  I  Q  T  S  S  D  *  W  W  T  L  V  V  E  E  L  T  L  F  P  F  S  S  L  R  C  T  S  G  H  H  H  T  K  M  Q  R  F  V  C  L  L  H  L  D  G  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0244P17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="137854" e_stop="137781"/>
            <exon e_start="135237" e_stop="135162"/>
            <exon e_start="134195" e_stop="133012"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="137854" e_stop="137781" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="137780" i_stop="135238" i_length="2543"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="135237" e_stop="135162" e_length="76"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="135161" i_stop="134196" i_length="966"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="134195" e_stop="133012" e_length="1184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137854" stop="137781"/>
              <exon start="135237" stop="135162"/>
              <exon start="134195" stop="133012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571808" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCATATCAACGAGTCAAAGCTCTTCTCCCTTTTCAACAAATCTTCTCATTTTTCTCCTTTTCTGGTTCCTCAG : ATTCTTTGAGGAAGTTGGTAGGGGGGTGATTTGAGCTAGAGATCGGTCTTTTGGCTATCTGTTTCGTCGTTATAAG : ATGCACTTCTGGTCATCATCATACCAAAATGCAGAGATTTGTTTGTCTCTTACATCTGGATGGATGCCAAGAAGTTTATGCAGTTGGTCGAGGAGAAGAAGAAGAGAGCTCTTGAGAAGAAAGAAGGCCACTTGAAATGGGAGCAAAAACTTGAAGCTTCAGCTAAAGGGAAGTCTGATGCTGAAGCTGGAGAGAAAACCAAGGCAGCTAAGCATAAAAGGAAATCTGTCTCGGGGTCTGATAGTGGGAGTGACACTGACAGTGAGTATGAAAAGAAAAAATCCACGAGAAAGTCCCATAAGAAGCACAGGAAGCACCATAGCTCAGATTTGGTTGATTTGGATAGGAAGGACAAGAAGTCCAAGCGGAAGCCGAAGAGAAGGTCCTCTGATTCCAGTGATGATAGCTGTAGGGAATATGATGGTAATTTAGAAGAAGATAGAAGAAGAAAGAAGCGCGGCCACAAGAAGCATAGGCATCATGATAGATACTCTGATTCCTCCGACTCTTCAGATGATGAAGACGTGGGAAGAAAACACCATTCAAAGCATCACAAACGTCATCGACGATCACAACCGAATGAATCAGAGTCTTCCAGTGATGATGACCATGTTGCAGCTAGGAAACGAAGCAACTCAAAGCATCATAAACGTCATGGGAGGTTGGACTCAGATGCTTCTGTCTCTTCTAGCGATGAAGAAAAAGTGAACCGTCGTAATCATGGAAAACACAAGAAACGTCATCACAGACCCCATAGTCACGACTCAAGGTCTTCGGATCCTGAAGATTTTAGGCATGAGAGAAGTAGATTCTTTGGTAAATCTTCTGATGAGAATGAGGAATTAGATAGAAAAGATAAGCACAGTAAGAATCATCATCGACATGGTCATCACCATCCCAACCATACGCATCGCCACTCAGTTGAAGTGTCGAAGGACAACCATCAACCTCATGACAGAAAGGAAAGAAATGGCGAGCGAGTAGACCATACTTCTGAGGTGCTCAATGTAAGTGATAACAGTGGTGCTCGTGTGACACAAAATGCTTAGAATGCTACCCAATTTATGTTAATTTTCCATTTTGTGGAGACTTAAATGGCCAAGGCCATTGGAGTTTTACAGTTGGACTGTAATATTCATCTAAAACCCATATTTCCTACTGTTGAATCTTTAAAGTGACTATAG</gDNA_template>
            <first_frame> L  I  S  T  S  Q  S  S  S  P  F  S  T  N  L  L  I  F  L  L  F  W  F  L  R :   F  F  E  E  V  G  R  G  V  I  *  A  R  D  R  S  F  G  Y  L  F  R  R  Y  K  :  M  H  F  W  S  S  S  Y  Q  N  A  E  I  C  L  S  L  T  S  G  W  M  P  R  S  L  C  S  W  S  R  R  R  R  R  E  L  L  R  R  K  K  A  T  *  N  G  S  K  N  L  K  L  Q  L  K  G  S  L  M  L  K  L  E  R  K  P  R  Q  L  S  I  K  G  N  L  S  R  G  L  I  V  G  V  T  L  T  V  S  M  K  R  K  N  P  R  E  S  P  I  R  S  T  G  S  T  I  A  Q  I  W  L  I  W  I  G  R  T  R  S  P  S  G  S  R  R  E  G  P  L  I  P  V  M  I  A  V  G  N  M  M  V  I  *  K  K  I  E  E  E  R  S  A  A  T  R  S  I  G  I  M  I  D  T  L  I  P  P  T  L  Q  M  M  K  T  W  E  E  N  T  I  Q  S  I  T  N  V  I  D  D  H  N  R  M  N  Q  S  L  P  V  M  M  T  M  L  Q  L  G  N  E  A  T  Q  S  I  I  N  V  M  G  G  W  T  Q  M  L  L  S  L  L  A  M  K  K  K  *  T  V  V  I  M  E  N  T  R  N  V  I  T  D  P  I  V  T  T  Q  G  L  R  I  L  K  I  L  G  M  R  E  V  D  S  L  V  N  L  L  M  R  M  R  N  *  I  E  K  I  S  T  V  R  I  I  I  D  M  V  I  T  I  P  T  I  R  I  A  T  Q  L  K  C  R  R  T  T  I  N  L  M  T  E  R  K  E  M  A  S  E  *  T  I  L  L  R  C  S  M  *  V  I  T  V  V  L  V  *  H  K  M  L  R  M  L  P  N  L  C  *  F  S  I  L  W  R  L  K  W  P  R  P  L  E  F  Y  S  W  T  V  I  F  I  *  N  P  Y  F  L  L  L  N  L  *  S  D  Y   </first_frame>
            <second_frame>  S  Y  Q  R  V  K  A  L  L  P  F  Q  Q  I  F  S  F  F  S  F  S  G  S  S   : D  S  L  R  K  L  V  G  G  *  F  E  L  E  I  G  L  L  A  I  C  F  V  V  I  R :   C  T  S  G  H  H  H  T  K  M  Q  R  F  V  C  L  L  H  L  D  G  C  Q  E  V  Y  A  V  G  R  G  E  E  E  E  S  S  *  E  E  R  R  P  L  E  M  G  A  K  T  *  S  F  S  *  R  E  V  *  C  *  S  W  R  E  N  Q  G  S  *  A  *  K  E  I  C  L  G  V  *  *  W  E  *  H  *  Q  *  V  *  K  E  K  I  H  E  K  V  P  *  E  A  Q  E  A  P  *  L  R  F  G  *  F  G  *  E  G  Q  E  V  Q  A  E  A  E  E  K  V  L  *  F  Q  *  *  *  L  *  G  I  *  W  *  F  R  R  R  *  K  K  K  E  A  R  P  Q  E  A  *  A  S  *  *  I  L  *  F  L  R  L  F  R  *  *  R  R  G  K  K  T  P  F  K  A  S  Q  T  S  S  T  I  T  T  E  *  I  R  V  F  Q  *  *  *  P  C  C  S  *  E  T  K  Q  L  K  A  S  *  T  S  W  E  V  G  L  R  C  F  C  L  F  *  R  *  R  K  S  E  P  S  *  S  W  K  T  Q  E  T  S  S  Q  T  P  *  S  R  L  K  V  F  G  S  *  R  F  *  A  *  E  K  *  I  L  W  *  I  F  *  *  E  *  G  I  R  *  K  R  *  A  Q  *  E  S  S  S  T  W  S  S  P  S  Q  P  Y  A  S  P  L  S  *  S  V  E  G  Q  P  S  T  S  *  Q  K  G  K  K  W  R  A  S  R  P  Y  F  *  G  A  Q  C  K  *  *  Q  W  C  S  C  D  T  K  C  L  E  C  Y  P  I  Y  V  N  F  P  F  C  G  D  L  N  G  Q  G  H  W  S  F  T  V  G  L  *  Y  S  S  K  T  H  I  S  Y  C  *  I  F  K  V  T  I  </second_frame>
            <third_frame>   H  I  N  E  S  K  L  F  S  L  F  N  K  S  S  H  F  S  P  F  L  V  P  Q  :  I  L  *  G  S  W  *  G  G  D  L  S  *  R  S  V  F  W  L  S  V  S  S  L  *   : D  A  L  L  V  I  I  I  P  K  C  R  D  L  F  V  S  Y  I  W  M  D  A  K  K  F  M  Q  L  V  E  E  K  K  K  R  A  L  E  K  K  E  G  H  L  K  W  E  Q  K  L  E  A  S  A  K  G  K  S  D  A  E  A  G  E  K  T  K  A  A  K  H  K  R  K  S  V  S  G  S  D  S  G  S  D  T  D  S  E  Y  E  K  K  K  S  T  R  K  S  H  K  K  H  R  K  H  H  S  S  D  L  V  D  L  D  R  K  D  K  K  S  K  R  K  P  K  R  R  S  S  D  S  S  D  D  S  C  R  E  Y  D  G  N  L  E  E  D  R  R  R  K  K  R  G  H  K  K  H  R  H  H  D  R  Y  S  D  S  S  D  S  S  D  D  E  D  V  G  R  K  H  H  S  K  H  H  K  R  H  R  R  S  Q  P  N  E  S  E  S  S  S  D  D  D  H  V  A  A  R  K  R  S  N  S  K  H  H  K  R  H  G  R  L  D  S  D  A  S  V  S  S  S  D  E  E  K  V  N  R  R  N  H  G  K  H  K  K  R  H  H  R  P  H  S  H  D  S  R  S  S  D  P  E  D  F  R  H  E  R  S  R  F  F  G  K  S  S  D  E  N  E  E  L  D  R  K  D  K  H  S  K  N  H  H  R  H  G  H  H  H  P  N  H  T  H  R  H  S  V  E  V  S  K  D  N  H  Q  P  H  D  R  K  E  R  N  G  E  R  V  D  H  T  S  E  V  L  N  V  S  D  N  S  G  A  R  V  T  Q  N  A  *  N  A  T  Q  F  M  L  I  F  H  F  V  E  T  *  M  A  K  A  I  G  V  L  Q  L  D  C  N  I  H  L  K  P  I  F  P  T  V  E  S  L  K  *  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0244P17.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135162" stop="133147"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1047</number_coding_nucleotides>
                  <number_encoded_amino_acids>349</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DALLVIIIPKCRDLFVSYIWMDAKKFMQLVEEKKKRALEKKEGHLKWEQKLEASAKGKSDAEAGEKTKAAKHKRKSVSGSDSGSDTDSEYEKKKSTRKSHKKHRKHHSSDLVDLDRKDKKSKRKPKRRSSDSSDDSCREYDGNLEEDRRRKKRGHKKHRHHDRYSDSSDSSDDEDVGRKHHSKHHKRHRRSQPNESESSSDDDHVAARKRSNSKHHKRHGRLDSDASVSSSDEEKVNRRNHGKHKKRHHRPHSHDSRSSDPEDFRHERSRFFGKSSDENEELDRKDKHSKNHHRHGHHHPNHTHRHSVEVSKDNHQPHDRKERNGERVDHTSEVLNVSDNSGARVTQNA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 66 chains have been computed
$ 
$ memory statistics:
$ 45384 bytes spliced alignments in total
$ 21 spliced alignments have been stored
$ 2161 bytes was the average size of a spliced alignment
$ 26424 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1554 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 73 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 20:44:37
-->
