<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:23:30"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0207N23-miJoa/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746493" ref_strand="+" ref_description="SGN-E746493 [GI|47104257]">
      <seq>caaaaaagctccagctgaaagaaaaaaaatttgttcattctttttctggattttgggaaatcaaggttttttttttgtgttctattgatttttgcggtggaaaaagggtgtaatgagtggttcaaaattggaggggccatcggctccggtggtaagacgagacccgtatgaagtgttggctgtgacgagggattcgtcggatcaggagattaagactgcttatagaaagcttgctctcaagtatcatcctgacaagaatgctaacaatcctgaagcttcagaacatttcaaggaggttgcatactcatatagcattctatctgatccagagaaaaggaggcaatatgatatggctggctttgaggctcttgaagctgaaggaatggatatggaaattgatttgtccaaccttggaactgtcaacacaatgtttgcagcattgtttagcaagttgggtgttcctatcaaaacaactatctctgcgaatgttcttgaagaagctttgaatggaactgtcacggtccgccctcttccaattggtacatcagtcagtggaaaggtagaaaagcaaaatgctcattttttcggtgtaacaattagtgacgaacaagcagaagcagggattgtagtaagagctacttcagctgcccaaagcaaattcaagctactatattttgaacatgatgtgagtgggggttacggcctggccttgcaggaagatagtgaaaaagcaggcaaggtaacctccgcagggatgtatttcttgcactttcaagtgtacagaatggattcaactgtaaatgcgttagcaatggccaaagatcctgaagctgctttctttaagaggctggagggccttcaaccttgtgaggtctcacaactaaatgctggcactcacatatttgctgtttatggtctgagctgcttttattttgttgaatatatgttttttatatttttgaaagatactatctgattgctactgattacgcaaacactaaagaaatgtttgatttaatttctgcaggagataatttttttaagcctgctagttatactattgaggctctgtgtgccaagacatacgaggacacaactcataatctccaggatatcgaggctcaaatattgaggaagagaaatgagcttcgacagtttgaaacagaatatagaaaggcattagcgcggttccaggaagtgaccaatagatatagccaggagaagcagtctgtcgaagaactgctcaaacagagagacaccatacactcttctttcaccgttacaaggacaattgctacgttaagtggcagtgggagtggccatttcagtaacggaagtagcagtaaaccttctggtgatgactcaaaacccgatagcccaggggacgatagcagttcagactccaaggacaaatacgcgaagagaaaatggttcaaccttaacctcaaaggatccgagaagaagtaatcagactgaagaattctccaaatgtactatttgttctattttcttgggcttccgagacgttcattaatttttttcgaaatatcattttttgggcacgttgatatgtctattttctatcgattgatcgaagatatagaagggtttttttttgttcctgtattgtacgtatgattcttctgcggtgtatcataatgtacttagtcaatgtatttcattattttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0207N23.1" temp_strand="-" temp_description="C05HBa0207N23.1  AC225119.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0207N23 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17231" stop="9129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16933" g_stop="16885" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16884" i_stop="16645" i_length="240">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.101" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16644" g_stop="16454" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="240" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16453" i_stop="14849" i_length="1605">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14848" g_stop="14725" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="364" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14724" i_stop="12699" i_length="2026">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12698" g_stop="12616" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="447" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12615" i_stop="12535" i_length="81">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12534" g_stop="12423" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="559" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12422" i_stop="12340" i_length="83">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12339" g_stop="12235" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="664" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12234" i_stop="12126" i_length="109">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12125" g_stop="12075" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="715" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="12074" i_stop="10740" i_length="1335">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="10739" g_stop="10650" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="805" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="10649" i_stop="10567" i_length="83">
            <donor d_prob="0.561" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="10566" g_stop="10199" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="806" r_stop="1176" r_length="371" r_score="0.962"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="10198" i_stop="10109" i_length="90">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="10108" g_stop="10055" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1177" r_stop="1230" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="10054" i_stop="9890" i_length="165">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.465" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="9889" g_stop="9429" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1231" r_stop="1690" r_length="460" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1691" polyA_stop="1704"/>
      <MATCH_line gen_id="C05HBa0207N23.1" gen_strand="-" ref_id="SGN-E746493" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>1688</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0207N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16933" e_stop="16885"/>
          <exon e_start="16644" e_stop="16454"/>
          <exon e_start="14848" e_stop="14725"/>
          <exon e_start="12698" e_stop="12616"/>
          <exon e_start="12534" e_stop="12423"/>
          <exon e_start="12339" e_stop="12235"/>
          <exon e_start="12125" e_stop="12075"/>
          <exon e_start="10739" e_stop="10650"/>
          <exon e_start="10566" e_stop="10199"/>
          <exon e_start="10108" e_stop="10055"/>
          <exon e_start="9889" e_stop="9429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAAGCTCCAGCTGAAAGAAAAAAAATTTGTTCATTCTTTTTTTTTTTTGGGTAAATTTCTCTTAAGCCCTAGCTATTTTAATTCAATTTTTAGTGTAATTTCATTGATTTTGATTCCTGTTATTAGATCTCTCTGTTGATTGATGTTATACTTGTTGAAAAAGTTTGATATTTATCCCAGAAAACGCAAAGGGGTGATTCAATTTTATGAATTTTGTGTTAAAAACTGATTAATTCATCTCGAATTTTAATGGGTTTGTGTTAAAATCTTGTCTTTTGGCTGTAGATTTTGGGAAATCAAGGTTTTTTTTTTGTGTTCTATTGATTTTTGCGGTGGAAAAAGGGTGTAATGAGTGGTTCAAAATTGGAGGGGCCATCGGCTCCGGTGGTAAGACGAGACCCGTATGAAGTGTTGGCTGTGACGAGGGATTCGTCGGATCAGGAGATTAAGACTGCTTATAGAAAGCTTGCTCTCAAGTAAGTGATTCCTAATATATGTTTGTTAATTTCAGTTTATAGTTAGTTTTTGCTATAATGGTGTTTGAATGTGGTATTGGAATGAATAGACATGAATAAAGCAGAATATGTGTAGCAAGTTTATGCAGCTGACAGAAGTAGTTGGAATTTAAGGCGTTTTTACCTCGACTAATTACACGGATACATGTCAACCTCCCACCAGCAAATAGGGACTAAGGCACAGCCATACCCTTGGGTGCTTTAAGGGTGTTATTGAATGATGGTATAACTGAGGTGTAAGTGTACCTAGTAAACCTAAATAGAAGTTTAGTGAGGATGGTGAAATGCGTAAACATTTCTGCTGGTATTTTTTTGGAGCTTGTTGTTACCACGCGGAGTTATTTAATTACGGTAGTAAGACAAAAATTATTGGAATTTATGGTCAAGTAATTAATTAGGTTATGTGATGATTGCCACATATTGTCATTTGAAGAAATAAAATATAGATGGAAGAGTCTTGCTTTTACATATATATACCATTGTTATCAAAAGCAGAAAGTGCAAAAAAGCTCTTAAGGTTCGGTGGGACTTTAAGCTCAAATATAGTTTGGACTTTTTTGGGAAAAGGCGCAAATGGAGAAAACATACAAATATATATATATATATATATATATATATATATATATATATATATATATATATTTGGCCTCTCCATACCAAGAAAGCGAATCACAATGGATCGAAGCCCTCCCTTTCCTTCCAATTAGTGAGATTCTATCTCTTACTTGGGAAATTGTGGTCAAGCCCTCCCTTTATTCCTCGGAATCGAGCGGGCAGCAAGAATTAGAATCAACCTATATAACATCTGTTCCCATGTAGTCGGCATTCTAGAAGCAAAGCTTCCCGGTCGCCTGCCTCCTTGTGTGGAAATGCTTTTCATGATCTCCAGCTCTTTCCCACCAGCTCGTTCTTTACTAGGCATCTAGGCGAACCCGCCGGGTTAATTAACTCAACGTAAAGAAAGCTCATTAGGTCAAAACTAGGGGAGTGCTTGCTAATAGCGAAAGGTTAACATCTCTCCGCCCTTATTAGTAGTAGCGAACATCAGGTAACTTCGTGCTGTAAAACGACAGATTGGTATCAGTTAGATGTGAAAAATGCCTTCTTGCATGGGGACTCGCACGAGGAGGTGTATATAGAGATAGCACCCGGATATGGAAGGATAGGGGAGATTAACCAACCAAAGTTGGCTTCAGTCATTATGTATTGAACAGAAGCAAAAGCCTCTCTCTCTCTCTCTCTATATATATATCTCGTCAGGAAATTCTCATTTACAAGGAAAAGCATGTCTTAGAGCTTTGATACGACATTAAAGCACACATTAAGCGAGTCGAATCACTAAATGCATTTTGAGCCTCGCTTTTGGGCTTACGCGAGCCTTGGATAACATTGATACATACGTATGATGCATCCGATGGAGAAAAATAATGGTGATGGGAAGTGAAATCCGGTTATTGAGTAAAAAGTGGCTGAAATTTTTCGGGCTGTGGATTTGGGATTTGGGGAACTTTTTGATTTGATACTTGCTCTTGTGGATGAATAATGGAATGCATAAATTATTGGCAGGTATCATCCTGACAAGAATGCTAACAATCCTGAAGCTTCAGAACATTTCAAGGAGGTTGCATACTCATATAGCATTCTATCTGATCCAGAGAAAAGGAGGCAATATGATATGGCTGGCTTCGAGGTACTCACCCCCTGCCTTTGTAAAAGACATATTTTTTTCAGACATGGTTGTTCATAATGAGCAATGATGTATGATGCGAAAGACTTTTACTTATTTTGCTGTTTTAAAGACTGAAATCATGGAGAATATTTTGTTTGATTTATATATCCTTACATTTGCTTGTTATGTCTCATGTTACATTTGAATGAGGTTACTGATTTAGCAGTAGAAAGAAAGTAGTTCATATATAGAACTCTTTATGTTTTTGATTTCAAGAAGGGTTATAGAAATAAGAGCTAGCTTAGGCAAATATTGCTTATATGATAGGTTGTAACTTTATGGCTTCAACCGTAGAAAGATTGAATACTAAGTGCTAACAATATAAACTTAACATATCGTAAGGGTTCAACAAAATGTGGATACTTGAAAGTTGCAGGATAGTGCTGCAGCAATCTAGATGTTAGAACACTCCTTTCATTCTTGAAGTTTCTGTCTTGTTGTATTTGTGGATATTAATAGGTGTAAAGCTGAAAAGTCATCCTATCAACTGCCATTTTCTGGACTCCTCACTTCTCCTGGAGATTTCTAGTCACGTATTGTTTATAGGGTTCCCAAAATATATTAGAAACAGAAACATGTTACAACGCAACATGTACCTACAAAGGCAGTCTTTGTTTTCATGTTAGTAGCAAAAGGTGCTTCTATTGTATGTTACAAGATCTTCCTAATGCCAACATCTTTCAGTTCGAAGGTTATAGTTCGTCTAAGTGATATTATTCATGTAAGGAATATATAAAATTTTATGCTAGAAATAAGTGAGTTTTAAGTACAAGGAAAGGATCTAGCTACTGGACATTGTCCCAATAGACCAGATATGCACATAAAAATGCATATTGGCCTAGCTAGGATAGAAATTGTGATTGTCCAGCCATTTGGGGAGATGACTCTACTTGCCAACTTTAATTTGAATCTCTTTGGATGATGAGCTTGGTAATAGAATCTGGTAGTTGTCTTTGATGTTAGAAAATTCTGACATTCTTTTCTCTCCATATATGATAAACAACAGCAGCCAACATCATCCTATACTCTTTAGCCTTGAAAGACTTCTCCTTAATTCATCCTTGTACGGCCACACTAGATCATCTCCCCAGGTCGTAGGAGCTCTTTTGATGTTCATCCATCTTTGCAATTTCCTCCAACTCTTAGCAGAAAAATCACAGGTAATGAATAGATGTGATATATTTTCCTCAGTCAGTTCACACAGGGTGCAATTCTGGTCATCAAGTATCCCCGTATAAACAATCTGTCTTTGGTTGATAATCTTTTGTGAGCAGCCAGTCGCAGTATTAAAATCCATCTTGGTAGCCCTTAGTTCTTACATGTCAGCCTTCCCCAGTTTAGGTTCCACCCTTGCGGACCCCAACTGTCTGCCACTGCGACTTCAGGATTCAAATTCGAAACCGTCATGTCATTGCACGTGTACTTCAAGGAATCATGTCCTAACCAGTTTTCAATTAAGAAAGATGTATATCTTCCATTCCCTTCTATAATGTCAATATTTGGAACCAAGAGAGGCCAAAAAACCTTGATGGACCTCCACACACTGAACCCATATAGTGTCGTTACTGCCCTTGAGACTCAATGTCCCGTAGACCATACTTTTCGCTGATGACCTCTTTCCATAGTGCTAGCTCTTCCTTACAAAATCTCCAAGTCCATTTCATCAGTAAGCTTTTGTTGTATAGTTTCAAAAATCTTATGCCTAGATATCTTGTTAAGTGTAAGATTTCTCCAATTAACAAGGTGAAAACATCTCCTTTTTGTTGCCTTGTATATGCTCTTCGCCTTTTATTTTAATCATTCACTTTACTCAGAGTATCGATATCATTTAGTTATTTTTGTCTGGGTCAATAGGCAGTTTGTGTTGGAAGCCTGAGTTCCAATTCTGGCTTTCTTTGGCAAGCTATAGCTGATAAAACTTCTTGAATCTACTATGCTCAAGGAATGCCATTTCTGTATTCTTTTGACATTTTTCTTTAATTTTAAGGCTCTTGAAGCTGAAGGAATGGATATGGAAATTGATTTGTCCAACCTCGGAACTGTCAACACAATGTTTGCAGCATTGTTTAGGTTAGTCTTCCTCCCAAAAATTTTGTCTTTCTGGTGATTCTTTTGATTAGTTTTCGTAAATTTGTTTATTTTTCTGGATAGCAAGTTGGGTGTTCCTATCAAAACAACTATCTCTGCGAATGTTCTTGAAGAAGCTTTGAATGGAACTGTCACGGTCCGCCCTCTTCCAATTGGTACATCAGTCAGTGGAAAGGTATAATTTAATTGTCTCTTCAATTGACAGGATAAATTTATCAGCTGTGCCAGGGTTTTGACATCCATTGAGCTTTAATGCAGGTAGAAAAGCAAAATGCTCATTTTTTCGGTGTAACAATTAGTGACGAACAAGCAGAAGCAGGGATTGTAGTAAGAGCTACTTCAGCTGCCCAAAGCAAATTCAAGGTACATTTTATACATTTATGTGATAGGTACTTTCGTGCACTTCGTATTTTCATGCCTTTTTTTTTTCCTACTGTGGTGATACTAAAACTGAGTTTCATGAAATTTTCAGCTACTATATTTTGAACATGATGTGAGTGGGGGTTACGGCCTGGCCTTGCAGGTAATGTATTTTATAGTTTTTATTCTTCATTGTATGCTTACAGAGGATTCCTATAGCCAACCCTTTGTTATTCTTATCCTCAAAAAAACCCTTTGTTATTCTGTGCTTGAGATATTTCTTGCTATAGATTTCTGTTGAACAACCTTGATGTTTGCTTAGAGTTATGTTAAATGGAATTGATGCTGAATTCTGAGTAATTTGATGTGGCTAGAGAACAATAAAGCAGTAAATAGTGATTAGGGAACTATTGCCCTAGGGCTGGACATGTTTAATTACTAACAAATGAATTTAGTAGGCATGTTTTGCCTGATCTTACTTAATATTTTTTGCAGTCAAGACATTCGTAAAAGGGCTTTTCTATCACTTGTTAGAAAATTTGACAAAATTATATAAGAAAATAGCATACCTCCAGTTTTGGTTAATAAATGGTATATGTTTAACCTTTTAAGAGAGTTCATGCATCATTCCAATATTGATTACATTTATAGATTCCCCATGTACACCCACCCAATCTTATTAAGTTTCTGTTGTACACTGAGGATCCAAAGAAAGTTAGGATCCAAACAAAGTTTCCATACCTAGAGTAGTCATCACATATCATCTTTGATTTGGCTATTCTTGTATATGTATCATCATATTAAGTTGAAAATTATGGGCATAACCTTTGGCAACCCAGTGTCCCTTAGGTAGATCAATCCGACCACCTTACCAACTTTTATTGTCACACAGTAACAACCAACAGTAGAATTATCGAACGCAAAGGACAAAGCTTCGGAGCAAGGTGTCAGCCTGAACATATCCTCAATTAATCTCCAAAAATAGAAGATATCTCCCCTAATCGGTGTTTGTGATAGCTTTAATTTGAAAGAAGTTTACCTATGGACTTGGGAATGTAAATGGAGAGCAAGGATGACACAAAGGTGTAATGATTCATAAGTGATTTCTCAAGAATGTGTAGATAGGATGATGACTAGGAGTAGAACAATAACTTTTCTAGCCGCTAGCGGAAGATTATGTGGAAAGGAGGTAAATCCGACTTTAGCGTATCCAAATAGCTCTGCCAAGAAAAAGCTCGAAAACAGTTGGGTAGGCCCGCCTGCTTTTGTTGGCTATCACTATGGGAAAAATCTGGTTTGCATCTTGCTATACATGTCTATCTTGAACCTTAAAGAGTGTATTTAGATGTTTCTTCTAGCTTGTAACTTCCAAGTTCCAGTCCTGTGTGTATCTTCTGTATTGATGAGCTTATAAACTGGATTTTAGATGAACTGATTATCCAAGCAATTTACTGATTACTGTTTGTTATTAAAACTGATCCATTGTCACTATTCACAGGAAGATAGTGAAAAAGCAGGCAAGGTAACCTCCGCAGGAATGTATTTCTTGCACTTTCAAGTGTACAGAATGGATTCAACTGTAAATGCGGTATGTGGATTCATCTTAGTGGTTAAAATTCAATAGTATTGCATGCAGTGTTATCAAAAGTGATAATACTCGTGATGATGTAGTTAGCAATGGCCAAAGATCCTGAAGCTGCTTTCTTTAAGAGGCTGGAGGGTCTTCAACCTTGTGAGGTCTCACAACTAAATGCCGGCACTCACATATTTGCTGTTTATGGTCTGAGCTGCTTTTATTTTGTTGAATATA--TTGTTT-TGTTTTTGAAAAATACTATCTGATTGCTACTGATTACGCAAACACTAAAGAAATGTTTGATTTAATTTCTGCAGGAGATAATTTCTTTAAGCCTGCTAGTTATACTATTGAGGCTCTGTGTGCCAAGACATACGAGGATACAACTCATAATCTCCAGGATATCGAGGCTCAGATATTGAGGAAGAGAAATGAGCTTCGACAGTTTGAAACAGAATATAGAAAGGTTTGTTAATCTGCTCATCGACAATGTCTGTCATTCATTTCTTGTATCTCATGCATCCTCATTCCACTATTTTCCATGTGATGTTTCCAGGCATTAGCGCGGTTCCAGGAAGTAACCAATAGATATAGCCAGGAGAAGCAGTCTGTAAGTTTTTCTCTTACCTAAGTTTCATTGCACTGAGATGGGATGTCCGCTTTGGTTTACCTATCCATTGTTTCTTAGTTATACTGATCTATATCCCGGGGGTTTGGAGGGCGGAGGAAATGAATATCTGTGAGTTACCCTCTGAGTGATGTTGTTTTTGTAAAGGTCGAAGAACTGCTCAAACAGAGAGACACCATACACTCTTCTTTCACCGTTACAAGGACAGTTGCTACGTTAAGTGGCAGTGGGAGTGGCCATTTCAGTAACGGAAGTAGCAGTAAACCTTCTGGTGATGACTCAAAACCCGATAGCCCAGGGGACGATAGCAGTTCAGACTCCAAGGACAAATACGCGAAGAGAAAATGGTTCAACCTTAACCTCAAAGGATCCGAGAAGAAGTAATCAGACTGAAGAATTCTCCAAATGTACTATTTGTTCTGTTTTCTTGGGCTTCCGAGACGTTCATTAA-TTTTTTCGAAATATCATTTTTTGGGCACGTTGATATGTCTATTTTCTATCGATTGATCGAAGATATAGAAGGGTTTTTTTGTTTGTTCCTGTATTGTACGTATTCTTCTTCTGCTGTGTATCATAATGTACTTAGTCAATGTATTTCATTATTTTCA</genome_strand>
        <mrna_strand>CAAAAAAGCTCCAGCTGAAAGAAAAAAAATTTGTTCATTCTTTTTCTGG................................................................................................................................................................................................................................................ATTTTGGGAAATCAAGGTTTTTTTTTTGTGTTCTATTGATTTTTGCGGTGGAAAAAGGGTGTAATGAGTGGTTCAAAATTGGAGGGGCCATCGGCTCCGGTGGTAAGACGAGACCCGTATGAAGTGTTGGCTGTGACGAGGGATTCGTCGGATCAGGAGATTAAGACTGCTTATAGAAAGCTTGCTCTCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCATCCTGACAAGAATGCTAACAATCCTGAAGCTTCAGAACATTTCAAGGAGGTTGCATACTCATATAGCATTCTATCTGATCCAGAGAAAAGGAGGCAATATGATATGGCTGGCTTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTGAAGCTGAAGGAATGGATATGGAAATTGATTTGTCCAACCTTGGAACTGTCAACACAATGTTTGCAGCATTGTTTAG.................................................................................CAAGTTGGGTGTTCCTATCAAAACAACTATCTCTGCGAATGTTCTTGAAGAAGCTTTGAATGGAACTGTCACGGTCCGCCCTCTTCCAATTGGTACATCAGTCAGTGGAAAG...................................................................................GTAGAAAAGCAAAATGCTCATTTTTTCGGTGTAACAATTAGTGACGAACAAGCAGAAGCAGGGATTGTAGTAAGAGCTACTTCAGCTGCCCAAAGCAAATTCAAG.............................................................................................................CTACTATATTTTGAACATGATGTGAGTGGGGGTTACGGCCTGGCCTTGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATAGTGAAAAAGCAGGCAAGGTAACCTCCGCAGGGATGTATTTCTTGCACTTTCAAGTGTACAGAATGGATTCAACTGTAAATGCG...................................................................................TTAGCAATGGCCAAAGATCCTGAAGCTGCTTTCTTTAAGAGGCTGGAGGGCCTTCAACCTTGTGAGGTCTCACAACTAAATGCTGGCACTCACATATTTGCTGTTTATGGTCTGAGCTGCTTTTATTTTGTTGAATATATGTTTTTTATATTTTTGAAAGATACTATCTGATTGCTACTGATTACGCAAACACTAAAGAAATGTTTGATTTAATTTCTGCAGGAGATAATTTTTTTAAGCCTGCTAGTTATACTATTGAGGCTCTGTGTGCCAAGACATACGAGGACACAACTCATAATCTCCAGGATATCGAGGCTCAAATATTGAGGAAGAGAAATGAGCTTCGACAGTTTGAAACAGAATATAGAAAG..........................................................................................GCATTAGCGCGGTTCCAGGAAGTGACCAATAGATATAGCCAGGAGAAGCAGTCT.....................................................................................................................................................................GTCGAAGAACTGCTCAAACAGAGAGACACCATACACTCTTCTTTCACCGTTACAAGGACAATTGCTACGTTAAGTGGCAGTGGGAGTGGCCATTTCAGTAACGGAAGTAGCAGTAAACCTTCTGGTGATGACTCAAAACCCGATAGCCCAGGGGACGATAGCAGTTCAGACTCCAAGGACAAATACGCGAAGAGAAAATGGTTCAACCTTAACCTCAAAGGATCCGAGAAGAAGTAATCAGACTGAAGAATTCTCCAAATGTACTATTTGTTCTATTTTCTTGGGCTTCCGAGACGTTCATTAATTTTTTTCGAAATATCATTTTTTGGGCACGTTGATATGTCTATTTTCTATCGATTGATCGAAGATATAGAAGGG-TTTTTT-TTTGTTCCTGTATTGTACGTATGATTCTTCTGCGGTGTATCATAATGTACTTAGTCAATGTATTTCATTATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716469" ref_strand="+" ref_description="SGN-E716469 [FB17AE10]">
      <seq>ctgaagctgctttctttaagaggctggagggtcttcaaccttgtgaggtctcacaactaaatgccggcactcacatatttgctgtttatggagataatttctttaagcctgctagttatactattgaggctctgtgtgccaagacatacgaggatacaactcataatctccaggatatcgaggctcagatattgaggaagagaaatgagcttcgacagtttgaaacagaatatagaaaggcattagcgcggttccaggaagtaaccaatagatatagccaggagaagcagtctgtcgaagaactgctcaaacagagagacaccatacactcttctttcaccgttacaaggacagttgctacgttaagtggcagtgggagtggccatttcagtaacggaagtagcagtaaaccttctggtgatgactcaaaacccgatagcccaggggacgatagcagttcagactccaaggacaaatacgcgaagagaaaatggttcaaccttaacctcaaaggatccgagaagaagtaatcagactgaagaattctccaaatgtactatttgttctgttttcttgggcttccgagacgttcattaattttttcgaaatatcattttttgggcacgttgatatgtctattttctatcgattgatcgaagatatagaagggtttttttgtttgttcctgtattgtacgtattcttcttctgctgtgtatcataatgtacttagtcaatgtatttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0207N23.1" temp_strand="-" temp_description="C05HBa0207N23.1  AC225119.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0207N23 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="10847" stop="9136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10547" g_stop="10458" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10457" i_stop="10348" i_length="110">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10347" g_stop="10199" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="239" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10198" i_stop="10109" i_length="90">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10108" g_stop="10055" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="293" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10054" i_stop="9890" i_length="165">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9889" g_stop="9436" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="747" r_length="454" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0207N23.1" gen_strand="-" ref_id="SGN-E716469" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0207N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10547" e_stop="10458"/>
          <exon e_start="10347" e_stop="10199"/>
          <exon e_start="10108" e_stop="10055"/>
          <exon e_start="9889" e_stop="9436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGCTGCTTTCTTTAAGAGGCTGGAGGGTCTTCAACCTTGTGAGGTCTCACAACTAAATGCCGGCACTCACATATTTGCTGTTTATGGTCTGAGCTGCTTTTATTTTGTTGAATATATTGTTTTGTTTTTGAAAAATACTATCTGATTGCTACTGATTACGCAAACACTAAAGAAATGTTTGATTTAATTTCTGCAGGAGATAATTTCTTTAAGCCTGCTAGTTATACTATTGAGGCTCTGTGTGCCAAGACATACGAGGATACAACTCATAATCTCCAGGATATCGAGGCTCAGATATTGAGGAAGAGAAATGAGCTTCGACAGTTTGAAACAGAATATAGAAAGGTTTGTTAATCTGCTCATCGACAATGTCTGTCATTCATTTCTTGTATCTCATGCATCCTCATTCCACTATTTTCCATGTGATGTTTCCAGGCATTAGCGCGGTTCCAGGAAGTAACCAATAGATATAGCCAGGAGAAGCAGTCTGTAAGTTTTTCTCTTACCTAAGTTTCATTGCACTGAGATGGGATGTCCGCTTTGGTTTACCTATCCATTGTTTCTTAGTTATACTGATCTATATCCCGGGGGTTTGGAGGGCGGAGGAAATGAATATCTGTGAGTTACCCTCTGAGTGATGTTGTTTTTGTAAAGGTCGAAGAACTGCTCAAACAGAGAGACACCATACACTCTTCTTTCACCGTTACAAGGACAGTTGCTACGTTAAGTGGCAGTGGGAGTGGCCATTTCAGTAACGGAAGTAGCAGTAAACCTTCTGGTGATGACTCAAAACCCGATAGCCCAGGGGACGATAGCAGTTCAGACTCCAAGGACAAATACGCGAAGAGAAAATGGTTCAACCTTAACCTCAAAGGATCCGAGAAGAAGTAATCAGACTGAAGAATTCTCCAAATGTACTATTTGTTCTGTTTTCTTGGGCTTCCGAGACGTTCATTAATTTTTTCGAAATATCATTTTTTGGGCACGTTGATATGTCTATTTTCTATCGATTGATCGAAGATATAGAAGGGTTTTTTTGTTTGTTCCTGTATTGTACGTATTCTTCTTCTGCTGTGTATCATAATGTACTTAGTCAATGTATTTCATT</genome_strand>
        <mrna_strand>CTGAAGCTGCTTTCTTTAAGAGGCTGGAGGGTCTTCAACCTTGTGAGGTCTCACAACTAAATGCCGGCACTCACATATTTGCTGTTTATG..............................................................................................................GAGATAATTTCTTTAAGCCTGCTAGTTATACTATTGAGGCTCTGTGTGCCAAGACATACGAGGATACAACTCATAATCTCCAGGATATCGAGGCTCAGATATTGAGGAAGAGAAATGAGCTTCGACAGTTTGAAACAGAATATAGAAAG..........................................................................................GCATTAGCGCGGTTCCAGGAAGTAACCAATAGATATAGCCAGGAGAAGCAGTCT.....................................................................................................................................................................GTCGAAGAACTGCTCAAACAGAGAGACACCATACACTCTTCTTTCACCGTTACAAGGACAGTTGCTACGTTAAGTGGCAGTGGGAGTGGCCATTTCAGTAACGGAAGTAGCAGTAAACCTTCTGGTGATGACTCAAAACCCGATAGCCCAGGGGACGATAGCAGTTCAGACTCCAAGGACAAATACGCGAAGAGAAAATGGTTCAACCTTAACCTCAAAGGATCCGAGAAGAAGTAATCAGACTGAAGAATTCTCCAAATGTACTATTTGTTCTGTTTTCTTGGGCTTCCGAGACGTTCATTAATTTTTTCGAAATATCATTTTTTGGGCACGTTGATATGTCTATTTTCTATCGATTGATCGAAGATATAGAAGGGTTTTTTTGTTTGTTCCTGTATTGTACGTATTCTTCTTCTGCTGTGTATCATAATGTACTTAGTCAATGTATTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731452" ref_strand="+" ref_description="SGN-E731452 [LA27AF11]">
      <seq>atcagtcagtggaaaggtagaaaagcaaaatgctcattttttcggtgtaacaattagtgacgaacaagcagaagcagggattgtagtaagagctacttcagctgcccaaagcaaattcaagctactatattttgaacatgatgtgagtgggggttacggcctggccttgcaggaagatagtgaaaaagcaggcaaggtaacctccgcaggaatgtatttcttgcactttcaagtgtacagaatggattcaactgtaaatgcgttagcaatggccaaagatcctgaagctgctttctttaagaggctggagggtcttcaaccttgtgaggtctcacaactaaatgccggcactcacatatttgctgtttatggagataatttctttaagcctgctagttatactattgaggctctgtgtgccaagacatacgaggatacaactcataatctccaggatatcgaggctcagatattgaggaagagaaatgagcttcgacagtttgaaacagaatatagaaaggcattagcgcggttccaggaagtaaccaatagatatagccaggagaagcagtctgtcgaagaactgctcaaacagagagacaccatacactcttctttcaccgttacaaggacagttgctacgttaagtggcagtgggagtggccatttcagtaacggaagtagcagtaaaccttctggtgatgactcaaaacccgatagcccaggggacgatagcagttcagactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0207N23.1" temp_strand="-" temp_description="C05HBa0207N23.1  AC225119.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0207N23 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="12738" stop="9417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12438" g_stop="12423" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12422" i_stop="12340" i_length="83">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12339" g_stop="12235" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="121" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12234" i_stop="12126" i_length="109">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12125" g_stop="12075" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="172" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12074" i_stop="10740" i_length="1335">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10739" g_stop="10650" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="262" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10649" i_stop="10567" i_length="83">
            <donor d_prob="0.561" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10566" g_stop="10458" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="371" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10457" i_stop="10348" i_length="110">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10347" g_stop="10199" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="520" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="10198" i_stop="10109" i_length="90">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10108" g_stop="10055" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="574" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="10054" i_stop="9890" i_length="165">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9889" g_stop="9717" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="747" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0207N23.1" gen_strand="-" ref_id="SGN-E731452" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0207N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12438" e_stop="12423"/>
          <exon e_start="12339" e_stop="12235"/>
          <exon e_start="12125" e_stop="12075"/>
          <exon e_start="10739" e_stop="10650"/>
          <exon e_start="10566" e_stop="10458"/>
          <exon e_start="10347" e_stop="10199"/>
          <exon e_start="10108" e_stop="10055"/>
          <exon e_start="9889" e_stop="9717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGTCAGTGGAAAGGTATAATTTAATTGTCTCTTCAATTGACAGGATAAATTTATCAGCTGTGCCAGGGTTTTGACATCCATTGAGCTTTAATGCAGGTAGAAAAGCAAAATGCTCATTTTTTCGGTGTAACAATTAGTGACGAACAAGCAGAAGCAGGGATTGTAGTAAGAGCTACTTCAGCTGCCCAAAGCAAATTCAAGGTACATTTTATACATTTATGTGATAGGTACTTTCGTGCACTTCGTATTTTCATGCCTTTTTTTTTTCCTACTGTGGTGATACTAAAACTGAGTTTCATGAAATTTTCAGCTACTATATTTTGAACATGATGTGAGTGGGGGTTACGGCCTGGCCTTGCAGGTAATGTATTTTATAGTTTTTATTCTTCATTGTATGCTTACAGAGGATTCCTATAGCCAACCCTTTGTTATTCTTATCCTCAAAAAAACCCTTTGTTATTCTGTGCTTGAGATATTTCTTGCTATAGATTTCTGTTGAACAACCTTGATGTTTGCTTAGAGTTATGTTAAATGGAATTGATGCTGAATTCTGAGTAATTTGATGTGGCTAGAGAACAATAAAGCAGTAAATAGTGATTAGGGAACTATTGCCCTAGGGCTGGACATGTTTAATTACTAACAAATGAATTTAGTAGGCATGTTTTGCCTGATCTTACTTAATATTTTTTGCAGTCAAGACATTCGTAAAAGGGCTTTTCTATCACTTGTTAGAAAATTTGACAAAATTATATAAGAAAATAGCATACCTCCAGTTTTGGTTAATAAATGGTATATGTTTAACCTTTTAAGAGAGTTCATGCATCATTCCAATATTGATTACATTTATAGATTCCCCATGTACACCCACCCAATCTTATTAAGTTTCTGTTGTACACTGAGGATCCAAAGAAAGTTAGGATCCAAACAAAGTTTCCATACCTAGAGTAGTCATCACATATCATCTTTGATTTGGCTATTCTTGTATATGTATCATCATATTAAGTTGAAAATTATGGGCATAACCTTTGGCAACCCAGTGTCCCTTAGGTAGATCAATCCGACCACCTTACCAACTTTTATTGTCACACAGTAACAACCAACAGTAGAATTATCGAACGCAAAGGACAAAGCTTCGGAGCAAGGTGTCAGCCTGAACATATCCTCAATTAATCTCCAAAAATAGAAGATATCTCCCCTAATCGGTGTTTGTGATAGCTTTAATTTGAAAGAAGTTTACCTATGGACTTGGGAATGTAAATGGAGAGCAAGGATGACACAAAGGTGTAATGATTCATAAGTGATTTCTCAAGAATGTGTAGATAGGATGATGACTAGGAGTAGAACAATAACTTTTCTAGCCGCTAGCGGAAGATTATGTGGAAAGGAGGTAAATCCGACTTTAGCGTATCCAAATAGCTCTGCCAAGAAAAAGCTCGAAAACAGTTGGGTAGGCCCGCCTGCTTTTGTTGGCTATCACTATGGGAAAAATCTGGTTTGCATCTTGCTATACATGTCTATCTTGAACCTTAAAGAGTGTATTTAGATGTTTCTTCTAGCTTGTAACTTCCAAGTTCCAGTCCTGTGTGTATCTTCTGTATTGATGAGCTTATAAACTGGATTTTAGATGAACTGATTATCCAAGCAATTTACTGATTACTGTTTGTTATTAAAACTGATCCATTGTCACTATTCACAGGAAGATAGTGAAAAAGCAGGCAAGGTAACCTCCGCAGGAATGTATTTCTTGCACTTTCAAGTGTACAGAATGGATTCAACTGTAAATGCGGTATGTGGATTCATCTTAGTGGTTAAAATTCAATAGTATTGCATGCAGTGTTATCAAAAGTGATAATACTCGTGATGATGTAGTTAGCAATGGCCAAAGATCCTGAAGCTGCTTTCTTTAAGAGGCTGGAGGGTCTTCAACCTTGTGAGGTCTCACAACTAAATGCCGGCACTCACATATTTGCTGTTTATGGTCTGAGCTGCTTTTATTTTGTTGAATATATTGTTTTGTTTTTGAAAAATACTATCTGATTGCTACTGATTACGCAAACACTAAAGAAATGTTTGATTTAATTTCTGCAGGAGATAATTTCTTTAAGCCTGCTAGTTATACTATTGAGGCTCTGTGTGCCAAGACATACGAGGATACAACTCATAATCTCCAGGATATCGAGGCTCAGATATTGAGGAAGAGAAATGAGCTTCGACAGTTTGAAACAGAATATAGAAAGGTTTGTTAATCTGCTCATCGACAATGTCTGTCATTCATTTCTTGTATCTCATGCATCCTCATTCCACTATTTTCCATGTGATGTTTCCAGGCATTAGCGCGGTTCCAGGAAGTAACCAATAGATATAGCCAGGAGAAGCAGTCTGTAAGTTTTTCTCTTACCTAAGTTTCATTGCACTGAGATGGGATGTCCGCTTTGGTTTACCTATCCATTGTTTCTTAGTTATACTGATCTATATCCCGGGGGTTTGGAGGGCGGAGGAAATGAATATCTGTGAGTTACCCTCTGAGTGATGTTGTTTTTGTAAAGGTCGAAGAACTGCTCAAACAGAGAGACACCATACACTCTTCTTTCACCGTTACAAGGACAGTTGCTACGTTAAGTGGCAGTGGGAGTGGCCATTTCAGTAACGGAAGTAGCAGTAAACCTTCTGGTGATGACTCAAAACCCGATAGCCCAGGGGACGATAGCAGTTCAGACTC</genome_strand>
        <mrna_strand>ATCAGTCAGTGGAAAG...................................................................................GTAGAAAAGCAAAATGCTCATTTTTTCGGTGTAACAATTAGTGACGAACAAGCAGAAGCAGGGATTGTAGTAAGAGCTACTTCAGCTGCCCAAAGCAAATTCAAG.............................................................................................................CTACTATATTTTGAACATGATGTGAGTGGGGGTTACGGCCTGGCCTTGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATAGTGAAAAAGCAGGCAAGGTAACCTCCGCAGGAATGTATTTCTTGCACTTTCAAGTGTACAGAATGGATTCAACTGTAAATGCG...................................................................................TTAGCAATGGCCAAAGATCCTGAAGCTGCTTTCTTTAAGAGGCTGGAGGGTCTTCAACCTTGTGAGGTCTCACAACTAAATGCCGGCACTCACATATTTGCTGTTTATG..............................................................................................................GAGATAATTTCTTTAAGCCTGCTAGTTATACTATTGAGGCTCTGTGTGCCAAGACATACGAGGATACAACTCATAATCTCCAGGATATCGAGGCTCAGATATTGAGGAAGAGAAATGAGCTTCGACAGTTTGAAACAGAATATAGAAAG..........................................................................................GCATTAGCGCGGTTCCAGGAAGTAACCAATAGATATAGCCAGGAGAAGCAGTCT.....................................................................................................................................................................GTCGAAGAACTGCTCAAACAGAGAGACACCATACACTCTTCTTTCACCGTTACAAGGACAGTTGCTACGTTAAGTGGCAGTGGGAGTGGCCATTTCAGTAACGGAAGTAGCAGTAAACCTTCTGGTGATGACTCAAAACCCGATAGCCCAGGGGACGATAGCAGTTCAGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327057" ref_strand="+" ref_description="SGN-E327057 [cTOC-18-L19]">
      <seq>tttgtccaacctcggaactgtcaacacaatgtttgcagcattgtttagcaagttgggtgttcctatcaaaacaactatctctgcgaatgttcttgaagaagctttgaatggaactgtcacggtccgccctcttccaattggtacatcagtcagtggaaaggtagaaaagcaaaatgctcattttttcggtgtaacaattagtgacgaacaagcagaagcagggattgtagtaagagctacttcagctgcccaaagcaaattcaagctactatattttgaacatgatgtgagtgggggttacggcctggccttgcaggaagatagtgaaaaagcaggcaaggtaacctccgcaggaatgtatttcttgcactttcaagtgtacagaatggattcaactgtaaatgcggtatgtggattcatcttagtggttaaaattcaatagtattgcatgcagtgttatcaaaagtgataatactcgtgatgatgtagttagcaatggccaaagatcctgaagctgctttctttaagaggctggagggtcttcaaccttgtgaggtctcacaactaaatgccggcactcacatatttgctgtttatggagataatttctttaagcctgctagttatactattgaggctctgtgtgcccagacatacgaggatacaactcataatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0207N23.1" temp_strand="-" temp_description="C05HBa0207N23.1  AC225119.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0207N23 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="12963" stop="9968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12663" g_stop="12616" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12615" i_stop="12535" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12534" g_stop="12423" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="160" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12422" i_stop="12340" i_length="83">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12339" g_stop="12235" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="265" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12234" i_stop="12126" i_length="109">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12125" g_stop="12075" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="316" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12074" i_stop="10740" i_length="1335">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10739" g_stop="10458" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="598" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10457" i_stop="10348" i_length="110">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10347" g_stop="10268" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="678" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0207N23.1" gen_strand="-" ref_id="SGN-E327057" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0207N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12663" e_stop="12616"/>
          <exon e_start="12534" e_stop="12423"/>
          <exon e_start="12339" e_stop="12235"/>
          <exon e_start="12125" e_stop="12075"/>
          <exon e_start="10739" e_stop="10458"/>
          <exon e_start="10347" e_stop="10268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTCCAACCTCGGAACTGTCAACACAATGTTTGCAGCATTGTTTAGGTTAGTCTTCCTCCCAAAAATTTTGTCTTTCTGGTGATTCTTTTGATTAGTTTTCGTAAATTTGTTTATTTTTCTGGATAGCAAGTTGGGTGTTCCTATCAAAACAACTATCTCTGCGAATGTTCTTGAAGAAGCTTTGAATGGAACTGTCACGGTCCGCCCTCTTCCAATTGGTACATCAGTCAGTGGAAAGGTATAATTTAATTGTCTCTTCAATTGACAGGATAAATTTATCAGCTGTGCCAGGGTTTTGACATCCATTGAGCTTTAATGCAGGTAGAAAAGCAAAATGCTCATTTTTTCGGTGTAACAATTAGTGACGAACAAGCAGAAGCAGGGATTGTAGTAAGAGCTACTTCAGCTGCCCAAAGCAAATTCAAGGTACATTTTATACATTTATGTGATAGGTACTTTCGTGCACTTCGTATTTTCATGCCTTTTTTTTTTCCTACTGTGGTGATACTAAAACTGAGTTTCATGAAATTTTCAGCTACTATATTTTGAACATGATGTGAGTGGGGGTTACGGCCTGGCCTTGCAGGTAATGTATTTTATAGTTTTTATTCTTCATTGTATGCTTACAGAGGATTCCTATAGCCAACCCTTTGTTATTCTTATCCTCAAAAAAACCCTTTGTTATTCTGTGCTTGAGATATTTCTTGCTATAGATTTCTGTTGAACAACCTTGATGTTTGCTTAGAGTTATGTTAAATGGAATTGATGCTGAATTCTGAGTAATTTGATGTGGCTAGAGAACAATAAAGCAGTAAATAGTGATTAGGGAACTATTGCCCTAGGGCTGGACATGTTTAATTACTAACAAATGAATTTAGTAGGCATGTTTTGCCTGATCTTACTTAATATTTTTTGCAGTCAAGACATTCGTAAAAGGGCTTTTCTATCACTTGTTAGAAAATTTGACAAAATTATATAAGAAAATAGCATACCTCCAGTTTTGGTTAATAAATGGTATATGTTTAACCTTTTAAGAGAGTTCATGCATCATTCCAATATTGATTACATTTATAGATTCCCCATGTACACCCACCCAATCTTATTAAGTTTCTGTTGTACACTGAGGATCCAAAGAAAGTTAGGATCCAAACAAAGTTTCCATACCTAGAGTAGTCATCACATATCATCTTTGATTTGGCTATTCTTGTATATGTATCATCATATTAAGTTGAAAATTATGGGCATAACCTTTGGCAACCCAGTGTCCCTTAGGTAGATCAATCCGACCACCTTACCAACTTTTATTGTCACACAGTAACAACCAACAGTAGAATTATCGAACGCAAAGGACAAAGCTTCGGAGCAAGGTGTCAGCCTGAACATATCCTCAATTAATCTCCAAAAATAGAAGATATCTCCCCTAATCGGTGTTTGTGATAGCTTTAATTTGAAAGAAGTTTACCTATGGACTTGGGAATGTAAATGGAGAGCAAGGATGACACAAAGGTGTAATGATTCATAAGTGATTTCTCAAGAATGTGTAGATAGGATGATGACTAGGAGTAGAACAATAACTTTTCTAGCCGCTAGCGGAAGATTATGTGGAAAGGAGGTAAATCCGACTTTAGCGTATCCAAATAGCTCTGCCAAGAAAAAGCTCGAAAACAGTTGGGTAGGCCCGCCTGCTTTTGTTGGCTATCACTATGGGAAAAATCTGGTTTGCATCTTGCTATACATGTCTATCTTGAACCTTAAAGAGTGTATTTAGATGTTTCTTCTAGCTTGTAACTTCCAAGTTCCAGTCCTGTGTGTATCTTCTGTATTGATGAGCTTATAAACTGGATTTTAGATGAACTGATTATCCAAGCAATTTACTGATTACTGTTTGTTATTAAAACTGATCCATTGTCACTATTCACAGGAAGATAGTGAAAAAGCAGGCAAGGTAACCTCCGCAGGAATGTATTTCTTGCACTTTCAAGTGTACAGAATGGATTCAACTGTAAATGCGGTATGTGGATTCATCTTAGTGGTTAAAATTCAATAGTATTGCATGCAGTGTTATCAAAAGTGATAATACTCGTGATGATGTAGTTAGCAATGGCCAAAGATCCTGAAGCTGCTTTCTTTAAGAGGCTGGAGGGTCTTCAACCTTGTGAGGTCTCACAACTAAATGCCGGCACTCACATATTTGCTGTTTATGGTCTGAGCTGCTTTTATTTTGTTGAATATATTGTTTTGTTTTTGAAAAATACTATCTGATTGCTACTGATTACGCAAACACTAAAGAAATGTTTGATTTAATTTCTGCAGGAGATAATTTCTTTAAGCCTGCTAGTTATACTATTGAGGCTCTGTGTGCCAAGACATACGAGGATACAACTCATAATCTC</genome_strand>
        <mrna_strand>TTTGTCCAACCTCGGAACTGTCAACACAATGTTTGCAGCATTGTTTAG.................................................................................CAAGTTGGGTGTTCCTATCAAAACAACTATCTCTGCGAATGTTCTTGAAGAAGCTTTGAATGGAACTGTCACGGTCCGCCCTCTTCCAATTGGTACATCAGTCAGTGGAAAG...................................................................................GTAGAAAAGCAAAATGCTCATTTTTTCGGTGTAACAATTAGTGACGAACAAGCAGAAGCAGGGATTGTAGTAAGAGCTACTTCAGCTGCCCAAAGCAAATTCAAG.............................................................................................................CTACTATATTTTGAACATGATGTGAGTGGGGGTTACGGCCTGGCCTTGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATAGTGAAAAAGCAGGCAAGGTAACCTCCGCAGGAATGTATTTCTTGCACTTTCAAGTGTACAGAATGGATTCAACTGTAAATGCGGTATGTGGATTCATCTTAGTGGTTAAAATTCAATAGTATTGCATGCAGTGTTATCAAAAGTGATAATACTCGTGATGATGTAGTTAGCAATGGCCAAAGATCCTGAAGCTGCTTTCTTTAAGAGGCTGGAGGGTCTTCAACCTTGTGAGGTCTCACAACTAAATGCCGGCACTCACATATTTGCTGTTTATG..............................................................................................................GAGATAATTTCTTTAAGCCTGCTAGTTATACTATTGAGGCTCTGTGTGCCCAGACATACGAGGATACAACTCATAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371329" ref_strand="+" ref_description="SGN-E371329 [TUS-27-A15]">
      <seq>cgagggattccccggatcacgagattaacactgcttatagaaagctcgctctcatgtatcatcctgaccagaatgctaacaagtcctgacgcttcagaacatttcaaggaggttgcatactcatatagcattctatctgatccagagaaaaggaggcaatatcatatggctggcttctaggctcttgaagctgaacgaatggatatggaaattgatttgtccaacctcggaactgtcaacacaatgtttgcagcattgtttatcaagttgggtgttcctatcaaaacacctatctctgcgaatgttcttgaataagcttagaatgcaactgtcacggtccgccctcttccaattggtacctcaatcactgtaaaggtaaacaagcactatgctcattttttccgagtaacaattaatgacgaacaagcacaaccacggattgcattaagatctacttcagctgcccaaagcaaattcaagctactatattttgaacatgatgtgagtggcggttacggcctggccttgcaggaagatactgaaaacgcaggcaaagtaacctccgcaagaatgtatttcttgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0207N23.1" temp_strand="-" temp_description="C05HBa0207N23.1  AC225119.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0207N23 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="16808" stop="10386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16508" g_stop="16454" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14849" i_length="1605">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14848" g_stop="14725" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="180" r_length="125" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14724" i_stop="12699" i_length="2026">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12698" g_stop="12616" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="263" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12615" i_stop="12535" i_length="81">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12534" g_stop="12423" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="375" r_length="112" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12422" i_stop="12340" i_length="83">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.652" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12339" g_stop="12235" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="480" r_length="105" r_score="0.876"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12234" i_stop="12126" i_length="109">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12125" g_stop="12075" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="531" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12074" i_stop="10740" i_length="1335">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10739" g_stop="10686" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="585" r_length="54" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0207N23.1" gen_strand="-" ref_id="SGN-E371329" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0207N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16508" e_stop="16454"/>
          <exon e_start="14848" e_stop="14725"/>
          <exon e_start="12698" e_stop="12616"/>
          <exon e_start="12534" e_stop="12423"/>
          <exon e_start="12339" e_stop="12235"/>
          <exon e_start="12125" e_stop="12075"/>
          <exon e_start="10739" e_stop="10686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGATTCGTCGGATCAGGAGATTAAGACTGCTTATAGAAAGCTTGCTCTCAAGTAAGTGATTCCTAATATATGTTTGTTAATTTCAGTTTATAGTTAGTTTTTGCTATAATGGTGTTTGAATGTGGTATTGGAATGAATAGACATGAATAAAGCAGAATATGTGTAGCAAGTTTATGCAGCTGACAGAAGTAGTTGGAATTTAAGGCGTTTTTACCTCGACTAATTACACGGATACATGTCAACCTCCCACCAGCAAATAGGGACTAAGGCACAGCCATACCCTTGGGTGCTTTAAGGGTGTTATTGAATGATGGTATAACTGAGGTGTAAGTGTACCTAGTAAACCTAAATAGAAGTTTAGTGAGGATGGTGAAATGCGTAAACATTTCTGCTGGTATTTTTTTGGAGCTTGTTGTTACCACGCGGAGTTATTTAATTACGGTAGTAAGACAAAAATTATTGGAATTTATGGTCAAGTAATTAATTAGGTTATGTGATGATTGCCACATATTGTCATTTGAAGAAATAAAATATAGATGGAAGAGTCTTGCTTTTACATATATATACCATTGTTATCAAAAGCAGAAAGTGCAAAAAAGCTCTTAAGGTTCGGTGGGACTTTAAGCTCAAATATAGTTTGGACTTTTTTGGGAAAAGGCGCAAATGGAGAAAACATACAAATATATATATATATATATATATATATATATATATATATATATATATATATATTTGGCCTCTCCATACCAAGAAAGCGAATCACAATGGATCGAAGCCCTCCCTTTCCTTCCAATTAGTGAGATTCTATCTCTTACTTGGGAAATTGTGGTCAAGCCCTCCCTTTATTCCTCGGAATCGAGCGGGCAGCAAGAATTAGAATCAACCTATATAACATCTGTTCCCATGTAGTCGGCATTCTAGAAGCAAAGCTTCCCGGTCGCCTGCCTCCTTGTGTGGAAATGCTTTTCATGATCTCCAGCTCTTTCCCACCAGCTCGTTCTTTACTAGGCATCTAGGCGAACCCGCCGGGTTAATTAACTCAACGTAAAGAAAGCTCATTAGGTCAAAACTAGGGGAGTGCTTGCTAATAGCGAAAGGTTAACATCTCTCCGCCCTTATTAGTAGTAGCGAACATCAGGTAACTTCGTGCTGTAAAACGACAGATTGGTATCAGTTAGATGTGAAAAATGCCTTCTTGCATGGGGACTCGCACGAGGAGGTGTATATAGAGATAGCACCCGGATATGGAAGGATAGGGGAGATTAACCAACCAAAGTTGGCTTCAGTCATTATGTATTGAACAGAAGCAAAAGCCTCTCTCTCTCTCTCTCTATATATATATCTCGTCAGGAAATTCTCATTTACAAGGAAAAGCATGTCTTAGAGCTTTGATACGACATTAAAGCACACATTAAGCGAGTCGAATCACTAAATGCATTTTGAGCCTCGCTTTTGGGCTTACGCGAGCCTTGGATAACATTGATACATACGTATGATGCATCCGATGGAGAAAAATAATGGTGATGGGAAGTGAAATCCGGTTATTGAGTAAAAAGTGGCTGAAATTTTTCGGGCTGTGGATTTGGGATTTGGGGAACTTTTTGATTTGATACTTGCTCTTGTGGATGAATAATGGAATGCATAAATTATTGGCAGGTATCATCCTGACAAGAATGCTAACAA-TCCTGAAGCTTCAGAACATTTCAAGGAGGTTGCATACTCATATAGCATTCTATCTGATCCAGAGAAAAGGAGGCAATATGATATGGCTGGCTTCGAGGTACTCACCCCCTGCCTTTGTAAAAGACATATTTTTTTCAGACATGGTTGTTCATAATGAGCAATGATGTATGATGCGAAAGACTTTTACTTATTTTGCTGTTTTAAAGACTGAAATCATGGAGAATATTTTGTTTGATTTATATATCCTTACATTTGCTTGTTATGTCTCATGTTACATTTGAATGAGGTTACTGATTTAGCAGTAGAAAGAAAGTAGTTCATATATAGAACTCTTTATGTTTTTGATTTCAAGAAGGGTTATAGAAATAAGAGCTAGCTTAGGCAAATATTGCTTATATGATAGGTTGTAACTTTATGGCTTCAACCGTAGAAAGATTGAATACTAAGTGCTAACAATATAAACTTAACATATCGTAAGGGTTCAACAAAATGTGGATACTTGAAAGTTGCAGGATAGTGCTGCAGCAATCTAGATGTTAGAACACTCCTTTCATTCTTGAAGTTTCTGTCTTGTTGTATTTGTGGATATTAATAGGTGTAAAGCTGAAAAGTCATCCTATCAACTGCCATTTTCTGGACTCCTCACTTCTCCTGGAGATTTCTAGTCACGTATTGTTTATAGGGTTCCCAAAATATATTAGAAACAGAAACATGTTACAACGCAACATGTACCTACAAAGGCAGTCTTTGTTTTCATGTTAGTAGCAAAAGGTGCTTCTATTGTATGTTACAAGATCTTCCTAATGCCAACATCTTTCAGTTCGAAGGTTATAGTTCGTCTAAGTGATATTATTCATGTAAGGAATATATAAAATTTTATGCTAGAAATAAGTGAGTTTTAAGTACAAGGAAAGGATCTAGCTACTGGACATTGTCCCAATAGACCAGATATGCACATAAAAATGCATATTGGCCTAGCTAGGATAGAAATTGTGATTGTCCAGCCATTTGGGGAGATGACTCTACTTGCCAACTTTAATTTGAATCTCTTTGGATGATGAGCTTGGTAATAGAATCTGGTAGTTGTCTTTGATGTTAGAAAATTCTGACATTCTTTTCTCTCCATATATGATAAACAACAGCAGCCAACATCATCCTATACTCTTTAGCCTTGAAAGACTTCTCCTTAATTCATCCTTGTACGGCCACACTAGATCATCTCCCCAGGTCGTAGGAGCTCTTTTGATGTTCATCCATCTTTGCAATTTCCTCCAACTCTTAGCAGAAAAATCACAGGTAATGAATAGATGTGATATATTTTCCTCAGTCAGTTCACACAGGGTGCAATTCTGGTCATCAAGTATCCCCGTATAAACAATCTGTCTTTGGTTGATAATCTTTTGTGAGCAGCCAGTCGCAGTATTAAAATCCATCTTGGTAGCCCTTAGTTCTTACATGTCAGCCTTCCCCAGTTTAGGTTCCACCCTTGCGGACCCCAACTGTCTGCCACTGCGACTTCAGGATTCAAATTCGAAACCGTCATGTCATTGCACGTGTACTTCAAGGAATCATGTCCTAACCAGTTTTCAATTAAGAAAGATGTATATCTTCCATTCCCTTCTATAATGTCAATATTTGGAACCAAGAGAGGCCAAAAAACCTTGATGGACCTCCACACACTGAACCCATATAGTGTCGTTACTGCCCTTGAGACTCAATGTCCCGTAGACCATACTTTTCGCTGATGACCTCTTTCCATAGTGCTAGCTCTTCCTTACAAAATCTCCAAGTCCATTTCATCAGTAAGCTTTTGTTGTATAGTTTCAAAAATCTTATGCCTAGATATCTTGTTAAGTGTAAGATTTCTCCAATTAACAAGGTGAAAACATCTCCTTTTTGTTGCCTTGTATATGCTCTTCGCCTTTTATTTTAATCATTCACTTTACTCAGAGTATCGATATCATTTAGTTATTTTTGTCTGGGTCAATAGGCAGTTTGTGTTGGAAGCCTGAGTTCCAATTCTGGCTTTCTTTGGCAAGCTATAGCTGATAAAACTTCTTGAATCTACTATGCTCAAGGAATGCCATTTCTGTATTCTTTTGACATTTTTCTTTAATTTTAAGGCTCTTGAAGCTGAAGGAATGGATATGGAAATTGATTTGTCCAACCTCGGAACTGTCAACACAATGTTTGCAGCATTGTTTAGGTTAGTCTTCCTCCCAAAAATTTTGTCTTTCTGGTGATTCTTTTGATTAGTTTTCGTAAATTTGTTTATTTTTCTGGATAGCAAGTTGGGTGTTCCTATCAAAACAACTATCTCTGCGAATGTTCTTGAAGAAGCTTTGAATGGAACTGTCACGGTCCGCCCTCTTCCAATTGGTACATCAGTCAGTGGAAAGGTATAATTTAATTGTCTCTTCAATTGACAGGATAAATTTATCAGCTGTGCCAGGGTTTTGACATCCATTGAGCTTTAATGCAGGTAGAAAAGCAAAATGCTCATTTTTTCGGTGTAACAATTAGTGACGAACAAGCAGAAGCAGGGATTGTAGTAAGAGCTACTTCAGCTGCCCAAAGCAAATTCAAGGTACATTTTATACATTTATGTGATAGGTACTTTCGTGCACTTCGTATTTTCATGCCTTTTTTTTTTCCTACTGTGGTGATACTAAAACTGAGTTTCATGAAATTTTCAGCTACTATATTTTGAACATGATGTGAGTGGGGGTTACGGCCTGGCCTTGCAGGTAATGTATTTTATAGTTTTTATTCTTCATTGTATGCTTACAGAGGATTCCTATAGCCAACCCTTTGTTATTCTTATCCTCAAAAAAACCCTTTGTTATTCTGTGCTTGAGATATTTCTTGCTATAGATTTCTGTTGAACAACCTTGATGTTTGCTTAGAGTTATGTTAAATGGAATTGATGCTGAATTCTGAGTAATTTGATGTGGCTAGAGAACAATAAAGCAGTAAATAGTGATTAGGGAACTATTGCCCTAGGGCTGGACATGTTTAATTACTAACAAATGAATTTAGTAGGCATGTTTTGCCTGATCTTACTTAATATTTTTTGCAGTCAAGACATTCGTAAAAGGGCTTTTCTATCACTTGTTAGAAAATTTGACAAAATTATATAAGAAAATAGCATACCTCCAGTTTTGGTTAATAAATGGTATATGTTTAACCTTTTAAGAGAGTTCATGCATCATTCCAATATTGATTACATTTATAGATTCCCCATGTACACCCACCCAATCTTATTAAGTTTCTGTTGTACACTGAGGATCCAAAGAAAGTTAGGATCCAAACAAAGTTTCCATACCTAGAGTAGTCATCACATATCATCTTTGATTTGGCTATTCTTGTATATGTATCATCATATTAAGTTGAAAATTATGGGCATAACCTTTGGCAACCCAGTGTCCCTTAGGTAGATCAATCCGACCACCTTACCAACTTTTATTGTCACACAGTAACAACCAACAGTAGAATTATCGAACGCAAAGGACAAAGCTTCGGAGCAAGGTGTCAGCCTGAACATATCCTCAATTAATCTCCAAAAATAGAAGATATCTCCCCTAATCGGTGTTTGTGATAGCTTTAATTTGAAAGAAGTTTACCTATGGACTTGGGAATGTAAATGGAGAGCAAGGATGACACAAAGGTGTAATGATTCATAAGTGATTTCTCAAGAATGTGTAGATAGGATGATGACTAGGAGTAGAACAATAACTTTTCTAGCCGCTAGCGGAAGATTATGTGGAAAGGAGGTAAATCCGACTTTAGCGTATCCAAATAGCTCTGCCAAGAAAAAGCTCGAAAACAGTTGGGTAGGCCCGCCTGCTTTTGTTGGCTATCACTATGGGAAAAATCTGGTTTGCATCTTGCTATACATGTCTATCTTGAACCTTAAAGAGTGTATTTAGATGTTTCTTCTAGCTTGTAACTTCCAAGTTCCAGTCCTGTGTGTATCTTCTGTATTGATGAGCTTATAAACTGGATTTTAGATGAACTGATTATCCAAGCAATTTACTGATTACTGTTTGTTATTAAAACTGATCCATTGTCACTATTCACAGGAAGATAGTGAAAAAGCAGGCAAGGTAACCTCCGCAGGAATGTATTTCTTGCAC</genome_strand>
        <mrna_strand>CGAGGGATTCCCCGGATCACGAGATTAACACTGCTTATAGAAAGCTCGCTCTCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCATCCTGACCAGAATGCTAACAAGTCCTGACGCTTCAGAACATTTCAAGGAGGTTGCATACTCATATAGCATTCTATCTGATCCAGAGAAAAGGAGGCAATATCATATGGCTGGCTTCTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTGAAGCTGAACGAATGGATATGGAAATTGATTTGTCCAACCTCGGAACTGTCAACACAATGTTTGCAGCATTGTTTAT.................................................................................CAAGTTGGGTGTTCCTATCAAAACACCTATCTCTGCGAATGTTCTTGAATAAGCTTAGAATGCAACTGTCACGGTCCGCCCTCTTCCAATTGGTACCTCAATCACTGTAAAG...................................................................................GTAAACAAGCACTATGCTCATTTTTTCCGAGTAACAATTAATGACGAACAAGCACAACCACGGATTGCATTAAGATCTACTTCAGCTGCCCAAAGCAAATTCAAG.............................................................................................................CTACTATATTTTGAACATGATGTGAGTGGCGGTTACGGCCTGGCCTTGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATACTGAAAACGCAGGCAAAGTAACCTCCGCAAGAATGTATTTCTTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268408" ref_strand="+" ref_description="SGN-E268408 [cLEI-13-H13]">
      <seq>taagacgagacccgtatgaagtgttggctgtgacgagggatgtcgtcggatcaggagattaagactgcttatagaaagcttgctctcaagtatcatcctgacaagaatgctaacaatcctgaagcttcagaacatttcaaggaggttgcatactcatatagcattctatctgatccagagaaaaggaggcaatatgatatggctggcttcgaggctcttgaagctgaaggaatggatatggaaattgatttgtccaacctcggaactgtcaacacaatgtttgcagcattgtttagcaagttgggtgttcctatcaaaacaactatctctgcgaatgttcttgaagaagctttgaatggaactgtcacggtccgccctcttccaattggtacatcagtcagtggaaaggtagaaaagcaaaatgctcattttttcggtgtaacaattagtgacgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0207N23.1" temp_strand="-" temp_description="C05HBa0207N23.1  AC225119.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0207N23 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="16841" stop="11990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16541" g_stop="16454" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14849" i_length="1605">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14848" g_stop="14725" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="213" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14724" i_stop="12699" i_length="2026">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12698" g_stop="12616" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="296" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12615" i_stop="12535" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12534" g_stop="12423" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="408" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12422" i_stop="12340" i_length="83">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12339" g_stop="12290" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="458" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0207N23.1" gen_strand="-" ref_id="SGN-E268408" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0207N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16541" e_stop="16454"/>
          <exon e_start="14848" e_stop="14725"/>
          <exon e_start="12698" e_stop="12616"/>
          <exon e_start="12534" e_stop="12423"/>
          <exon e_start="12339" e_stop="12290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGACGAGACCCGTATGAAGTGTTGGCTGTGACGAGGGAT-TCGTCGGATCAGGAGATTAAGACTGCTTATAGAAAGCTTGCTCTCAAGTAAGTGATTCCTAATATATGTTTGTTAATTTCAGTTTATAGTTAGTTTTTGCTATAATGGTGTTTGAATGTGGTATTGGAATGAATAGACATGAATAAAGCAGAATATGTGTAGCAAGTTTATGCAGCTGACAGAAGTAGTTGGAATTTAAGGCGTTTTTACCTCGACTAATTACACGGATACATGTCAACCTCCCACCAGCAAATAGGGACTAAGGCACAGCCATACCCTTGGGTGCTTTAAGGGTGTTATTGAATGATGGTATAACTGAGGTGTAAGTGTACCTAGTAAACCTAAATAGAAGTTTAGTGAGGATGGTGAAATGCGTAAACATTTCTGCTGGTATTTTTTTGGAGCTTGTTGTTACCACGCGGAGTTATTTAATTACGGTAGTAAGACAAAAATTATTGGAATTTATGGTCAAGTAATTAATTAGGTTATGTGATGATTGCCACATATTGTCATTTGAAGAAATAAAATATAGATGGAAGAGTCTTGCTTTTACATATATATACCATTGTTATCAAAAGCAGAAAGTGCAAAAAAGCTCTTAAGGTTCGGTGGGACTTTAAGCTCAAATATAGTTTGGACTTTTTTGGGAAAAGGCGCAAATGGAGAAAACATACAAATATATATATATATATATATATATATATATATATATATATATATATATATATTTGGCCTCTCCATACCAAGAAAGCGAATCACAATGGATCGAAGCCCTCCCTTTCCTTCCAATTAGTGAGATTCTATCTCTTACTTGGGAAATTGTGGTCAAGCCCTCCCTTTATTCCTCGGAATCGAGCGGGCAGCAAGAATTAGAATCAACCTATATAACATCTGTTCCCATGTAGTCGGCATTCTAGAAGCAAAGCTTCCCGGTCGCCTGCCTCCTTGTGTGGAAATGCTTTTCATGATCTCCAGCTCTTTCCCACCAGCTCGTTCTTTACTAGGCATCTAGGCGAACCCGCCGGGTTAATTAACTCAACGTAAAGAAAGCTCATTAGGTCAAAACTAGGGGAGTGCTTGCTAATAGCGAAAGGTTAACATCTCTCCGCCCTTATTAGTAGTAGCGAACATCAGGTAACTTCGTGCTGTAAAACGACAGATTGGTATCAGTTAGATGTGAAAAATGCCTTCTTGCATGGGGACTCGCACGAGGAGGTGTATATAGAGATAGCACCCGGATATGGAAGGATAGGGGAGATTAACCAACCAAAGTTGGCTTCAGTCATTATGTATTGAACAGAAGCAAAAGCCTCTCTCTCTCTCTCTCTATATATATATCTCGTCAGGAAATTCTCATTTACAAGGAAAAGCATGTCTTAGAGCTTTGATACGACATTAAAGCACACATTAAGCGAGTCGAATCACTAAATGCATTTTGAGCCTCGCTTTTGGGCTTACGCGAGCCTTGGATAACATTGATACATACGTATGATGCATCCGATGGAGAAAAATAATGGTGATGGGAAGTGAAATCCGGTTATTGAGTAAAAAGTGGCTGAAATTTTTCGGGCTGTGGATTTGGGATTTGGGGAACTTTTTGATTTGATACTTGCTCTTGTGGATGAATAATGGAATGCATAAATTATTGGCAGGTATCATCCTGACAAGAATGCTAACAATCCTGAAGCTTCAGAACATTTCAAGGAGGTTGCATACTCATATAGCATTCTATCTGATCCAGAGAAAAGGAGGCAATATGATATGGCTGGCTTCGAGGTACTCACCCCCTGCCTTTGTAAAAGACATATTTTTTTCAGACATGGTTGTTCATAATGAGCAATGATGTATGATGCGAAAGACTTTTACTTATTTTGCTGTTTTAAAGACTGAAATCATGGAGAATATTTTGTTTGATTTATATATCCTTACATTTGCTTGTTATGTCTCATGTTACATTTGAATGAGGTTACTGATTTAGCAGTAGAAAGAAAGTAGTTCATATATAGAACTCTTTATGTTTTTGATTTCAAGAAGGGTTATAGAAATAAGAGCTAGCTTAGGCAAATATTGCTTATATGATAGGTTGTAACTTTATGGCTTCAACCGTAGAAAGATTGAATACTAAGTGCTAACAATATAAACTTAACATATCGTAAGGGTTCAACAAAATGTGGATACTTGAAAGTTGCAGGATAGTGCTGCAGCAATCTAGATGTTAGAACACTCCTTTCATTCTTGAAGTTTCTGTCTTGTTGTATTTGTGGATATTAATAGGTGTAAAGCTGAAAAGTCATCCTATCAACTGCCATTTTCTGGACTCCTCACTTCTCCTGGAGATTTCTAGTCACGTATTGTTTATAGGGTTCCCAAAATATATTAGAAACAGAAACATGTTACAACGCAACATGTACCTACAAAGGCAGTCTTTGTTTTCATGTTAGTAGCAAAAGGTGCTTCTATTGTATGTTACAAGATCTTCCTAATGCCAACATCTTTCAGTTCGAAGGTTATAGTTCGTCTAAGTGATATTATTCATGTAAGGAATATATAAAATTTTATGCTAGAAATAAGTGAGTTTTAAGTACAAGGAAAGGATCTAGCTACTGGACATTGTCCCAATAGACCAGATATGCACATAAAAATGCATATTGGCCTAGCTAGGATAGAAATTGTGATTGTCCAGCCATTTGGGGAGATGACTCTACTTGCCAACTTTAATTTGAATCTCTTTGGATGATGAGCTTGGTAATAGAATCTGGTAGTTGTCTTTGATGTTAGAAAATTCTGACATTCTTTTCTCTCCATATATGATAAACAACAGCAGCCAACATCATCCTATACTCTTTAGCCTTGAAAGACTTCTCCTTAATTCATCCTTGTACGGCCACACTAGATCATCTCCCCAGGTCGTAGGAGCTCTTTTGATGTTCATCCATCTTTGCAATTTCCTCCAACTCTTAGCAGAAAAATCACAGGTAATGAATAGATGTGATATATTTTCCTCAGTCAGTTCACACAGGGTGCAATTCTGGTCATCAAGTATCCCCGTATAAACAATCTGTCTTTGGTTGATAATCTTTTGTGAGCAGCCAGTCGCAGTATTAAAATCCATCTTGGTAGCCCTTAGTTCTTACATGTCAGCCTTCCCCAGTTTAGGTTCCACCCTTGCGGACCCCAACTGTCTGCCACTGCGACTTCAGGATTCAAATTCGAAACCGTCATGTCATTGCACGTGTACTTCAAGGAATCATGTCCTAACCAGTTTTCAATTAAGAAAGATGTATATCTTCCATTCCCTTCTATAATGTCAATATTTGGAACCAAGAGAGGCCAAAAAACCTTGATGGACCTCCACACACTGAACCCATATAGTGTCGTTACTGCCCTTGAGACTCAATGTCCCGTAGACCATACTTTTCGCTGATGACCTCTTTCCATAGTGCTAGCTCTTCCTTACAAAATCTCCAAGTCCATTTCATCAGTAAGCTTTTGTTGTATAGTTTCAAAAATCTTATGCCTAGATATCTTGTTAAGTGTAAGATTTCTCCAATTAACAAGGTGAAAACATCTCCTTTTTGTTGCCTTGTATATGCTCTTCGCCTTTTATTTTAATCATTCACTTTACTCAGAGTATCGATATCATTTAGTTATTTTTGTCTGGGTCAATAGGCAGTTTGTGTTGGAAGCCTGAGTTCCAATTCTGGCTTTCTTTGGCAAGCTATAGCTGATAAAACTTCTTGAATCTACTATGCTCAAGGAATGCCATTTCTGTATTCTTTTGACATTTTTCTTTAATTTTAAGGCTCTTGAAGCTGAAGGAATGGATATGGAAATTGATTTGTCCAACCTCGGAACTGTCAACACAATGTTTGCAGCATTGTTTAGGTTAGTCTTCCTCCCAAAAATTTTGTCTTTCTGGTGATTCTTTTGATTAGTTTTCGTAAATTTGTTTATTTTTCTGGATAGCAAGTTGGGTGTTCCTATCAAAACAACTATCTCTGCGAATGTTCTTGAAGAAGCTTTGAATGGAACTGTCACGGTCCGCCCTCTTCCAATTGGTACATCAGTCAGTGGAAAGGTATAATTTAATTGTCTCTTCAATTGACAGGATAAATTTATCAGCTGTGCCAGGGTTTTGACATCCATTGAGCTTTAATGCAGGTAGAAAAGCAAAATGCTCATTTTTTCGGTGTAACAATTAGTGACGAACA</genome_strand>
        <mrna_strand>TAAGACGAGACCCGTATGAAGTGTTGGCTGTGACGAGGGATGTCGTCGGATCAGGAGATTAAGACTGCTTATAGAAAGCTTGCTCTCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCATCCTGACAAGAATGCTAACAATCCTGAAGCTTCAGAACATTTCAAGGAGGTTGCATACTCATATAGCATTCTATCTGATCCAGAGAAAAGGAGGCAATATGATATGGCTGGCTTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTGAAGCTGAAGGAATGGATATGGAAATTGATTTGTCCAACCTCGGAACTGTCAACACAATGTTTGCAGCATTGTTTAG.................................................................................CAAGTTGGGTGTTCCTATCAAAACAACTATCTCTGCGAATGTTCTTGAAGAAGCTTTGAATGGAACTGTCACGGTCCGCCCTCTTCCAATTGGTACATCAGTCAGTGGAAAG...................................................................................GTAGAAAAGCAAAATGCTCATTTTTTCGGTGTAACAATTAGTGACGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365415" ref_strand="+" ref_description="SGN-E365415 [cLPT-2-O15]">
      <seq>aaaaaagctccagctgaaagaaaaaaaatttgttcattctttttctggattttgggaaatcaaggttttttttttgtgttctattgatttttgcggtggaaaaagggtgtaatgagtggttcaaaattggaggggccatcggctccggtggtaagacgagacccgtatgaagtgttggctgtgacgagggattcgtcggatcaggagattaagactgcttatagaaagcttgctctcaagtatcatcctgacaagaatgctaacaatcctgaagcttcagaacatttcaaggaggttgcatactcatatagcattctatctgatccagagaaaaggaggcaatatgatatggctggctttgaggctcttgaagctgaaggaatggatatggaaattgatttgtccaaccttggaactgtcaacacaatgtttgcagcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0207N23.1" temp_strand="-" temp_description="C05HBa0207N23.1  AC225119.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0207N23 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17231" stop="12321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16932" g_stop="16885" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16884" i_stop="16645" i_length="240">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.101" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16644" g_stop="16454" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="239" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16453" i_stop="14849" i_length="1605">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14848" g_stop="14725" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="363" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14724" i_stop="12699" i_length="2026">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12698" g_stop="12621" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="441" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0207N23.1" gen_strand="-" ref_id="SGN-E365415" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0207N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16932" e_stop="16885"/>
          <exon e_start="16644" e_stop="16454"/>
          <exon e_start="14848" e_stop="14725"/>
          <exon e_start="12698" e_stop="12621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGCTCCAGCTGAAAGAAAAAAAATTTGTTCATTCTTTTTTTTTTTTGGGTAAATTTCTCTTAAGCCCTAGCTATTTTAATTCAATTTTTAGTGTAATTTCATTGATTTTGATTCCTGTTATTAGATCTCTCTGTTGATTGATGTTATACTTGTTGAAAAAGTTTGATATTTATCCCAGAAAACGCAAAGGGGTGATTCAATTTTATGAATTTTGTGTTAAAAACTGATTAATTCATCTCGAATTTTAATGGGTTTGTGTTAAAATCTTGTCTTTTGGCTGTAGATTTTGGGAAATCAAGGTTTTTTTTTTGTGTTCTATTGATTTTTGCGGTGGAAAAAGGGTGTAATGAGTGGTTCAAAATTGGAGGGGCCATCGGCTCCGGTGGTAAGACGAGACCCGTATGAAGTGTTGGCTGTGACGAGGGATTCGTCGGATCAGGAGATTAAGACTGCTTATAGAAAGCTTGCTCTCAAGTAAGTGATTCCTAATATATGTTTGTTAATTTCAGTTTATAGTTAGTTTTTGCTATAATGGTGTTTGAATGTGGTATTGGAATGAATAGACATGAATAAAGCAGAATATGTGTAGCAAGTTTATGCAGCTGACAGAAGTAGTTGGAATTTAAGGCGTTTTTACCTCGACTAATTACACGGATACATGTCAACCTCCCACCAGCAAATAGGGACTAAGGCACAGCCATACCCTTGGGTGCTTTAAGGGTGTTATTGAATGATGGTATAACTGAGGTGTAAGTGTACCTAGTAAACCTAAATAGAAGTTTAGTGAGGATGGTGAAATGCGTAAACATTTCTGCTGGTATTTTTTTGGAGCTTGTTGTTACCACGCGGAGTTATTTAATTACGGTAGTAAGACAAAAATTATTGGAATTTATGGTCAAGTAATTAATTAGGTTATGTGATGATTGCCACATATTGTCATTTGAAGAAATAAAATATAGATGGAAGAGTCTTGCTTTTACATATATATACCATTGTTATCAAAAGCAGAAAGTGCAAAAAAGCTCTTAAGGTTCGGTGGGACTTTAAGCTCAAATATAGTTTGGACTTTTTTGGGAAAAGGCGCAAATGGAGAAAACATACAAATATATATATATATATATATATATATATATATATATATATATATATATATATTTGGCCTCTCCATACCAAGAAAGCGAATCACAATGGATCGAAGCCCTCCCTTTCCTTCCAATTAGTGAGATTCTATCTCTTACTTGGGAAATTGTGGTCAAGCCCTCCCTTTATTCCTCGGAATCGAGCGGGCAGCAAGAATTAGAATCAACCTATATAACATCTGTTCCCATGTAGTCGGCATTCTAGAAGCAAAGCTTCCCGGTCGCCTGCCTCCTTGTGTGGAAATGCTTTTCATGATCTCCAGCTCTTTCCCACCAGCTCGTTCTTTACTAGGCATCTAGGCGAACCCGCCGGGTTAATTAACTCAACGTAAAGAAAGCTCATTAGGTCAAAACTAGGGGAGTGCTTGCTAATAGCGAAAGGTTAACATCTCTCCGCCCTTATTAGTAGTAGCGAACATCAGGTAACTTCGTGCTGTAAAACGACAGATTGGTATCAGTTAGATGTGAAAAATGCCTTCTTGCATGGGGACTCGCACGAGGAGGTGTATATAGAGATAGCACCCGGATATGGAAGGATAGGGGAGATTAACCAACCAAAGTTGGCTTCAGTCATTATGTATTGAACAGAAGCAAAAGCCTCTCTCTCTCTCTCTCTATATATATATCTCGTCAGGAAATTCTCATTTACAAGGAAAAGCATGTCTTAGAGCTTTGATACGACATTAAAGCACACATTAAGCGAGTCGAATCACTAAATGCATTTTGAGCCTCGCTTTTGGGCTTACGCGAGCCTTGGATAACATTGATACATACGTATGATGCATCCGATGGAGAAAAATAATGGTGATGGGAAGTGAAATCCGGTTATTGAGTAAAAAGTGGCTGAAATTTTTCGGGCTGTGGATTTGGGATTTGGGGAACTTTTTGATTTGATACTTGCTCTTGTGGATGAATAATGGAATGCATAAATTATTGGCAGGTATCATCCTGACAAGAATGCTAACAATCCTGAAGCTTCAGAACATTTCAAGGAGGTTGCATACTCATATAGCATTCTATCTGATCCAGAGAAAAGGAGGCAATATGATATGGCTGGCTTCGAGGTACTCACCCCCTGCCTTTGTAAAAGACATATTTTTTTCAGACATGGTTGTTCATAATGAGCAATGATGTATGATGCGAAAGACTTTTACTTATTTTGCTGTTTTAAAGACTGAAATCATGGAGAATATTTTGTTTGATTTATATATCCTTACATTTGCTTGTTATGTCTCATGTTACATTTGAATGAGGTTACTGATTTAGCAGTAGAAAGAAAGTAGTTCATATATAGAACTCTTTATGTTTTTGATTTCAAGAAGGGTTATAGAAATAAGAGCTAGCTTAGGCAAATATTGCTTATATGATAGGTTGTAACTTTATGGCTTCAACCGTAGAAAGATTGAATACTAAGTGCTAACAATATAAACTTAACATATCGTAAGGGTTCAACAAAATGTGGATACTTGAAAGTTGCAGGATAGTGCTGCAGCAATCTAGATGTTAGAACACTCCTTTCATTCTTGAAGTTTCTGTCTTGTTGTATTTGTGGATATTAATAGGTGTAAAGCTGAAAAGTCATCCTATCAACTGCCATTTTCTGGACTCCTCACTTCTCCTGGAGATTTCTAGTCACGTATTGTTTATAGGGTTCCCAAAATATATTAGAAACAGAAACATGTTACAACGCAACATGTACCTACAAAGGCAGTCTTTGTTTTCATGTTAGTAGCAAAAGGTGCTTCTATTGTATGTTACAAGATCTTCCTAATGCCAACATCTTTCAGTTCGAAGGTTATAGTTCGTCTAAGTGATATTATTCATGTAAGGAATATATAAAATTTTATGCTAGAAATAAGTGAGTTTTAAGTACAAGGAAAGGATCTAGCTACTGGACATTGTCCCAATAGACCAGATATGCACATAAAAATGCATATTGGCCTAGCTAGGATAGAAATTGTGATTGTCCAGCCATTTGGGGAGATGACTCTACTTGCCAACTTTAATTTGAATCTCTTTGGATGATGAGCTTGGTAATAGAATCTGGTAGTTGTCTTTGATGTTAGAAAATTCTGACATTCTTTTCTCTCCATATATGATAAACAACAGCAGCCAACATCATCCTATACTCTTTAGCCTTGAAAGACTTCTCCTTAATTCATCCTTGTACGGCCACACTAGATCATCTCCCCAGGTCGTAGGAGCTCTTTTGATGTTCATCCATCTTTGCAATTTCCTCCAACTCTTAGCAGAAAAATCACAGGTAATGAATAGATGTGATATATTTTCCTCAGTCAGTTCACACAGGGTGCAATTCTGGTCATCAAGTATCCCCGTATAAACAATCTGTCTTTGGTTGATAATCTTTTGTGAGCAGCCAGTCGCAGTATTAAAATCCATCTTGGTAGCCCTTAGTTCTTACATGTCAGCCTTCCCCAGTTTAGGTTCCACCCTTGCGGACCCCAACTGTCTGCCACTGCGACTTCAGGATTCAAATTCGAAACCGTCATGTCATTGCACGTGTACTTCAAGGAATCATGTCCTAACCAGTTTTCAATTAAGAAAGATGTATATCTTCCATTCCCTTCTATAATGTCAATATTTGGAACCAAGAGAGGCCAAAAAACCTTGATGGACCTCCACACACTGAACCCATATAGTGTCGTTACTGCCCTTGAGACTCAATGTCCCGTAGACCATACTTTTCGCTGATGACCTCTTTCCATAGTGCTAGCTCTTCCTTACAAAATCTCCAAGTCCATTTCATCAGTAAGCTTTTGTTGTATAGTTTCAAAAATCTTATGCCTAGATATCTTGTTAAGTGTAAGATTTCTCCAATTAACAAGGTGAAAACATCTCCTTTTTGTTGCCTTGTATATGCTCTTCGCCTTTTATTTTAATCATTCACTTTACTCAGAGTATCGATATCATTTAGTTATTTTTGTCTGGGTCAATAGGCAGTTTGTGTTGGAAGCCTGAGTTCCAATTCTGGCTTTCTTTGGCAAGCTATAGCTGATAAAACTTCTTGAATCTACTATGCTCAAGGAATGCCATTTCTGTATTCTTTTGACATTTTTCTTTAATTTTAAGGCTCTTGAAGCTGAAGGAATGGATATGGAAATTGATTTGTCCAACCTCGGAACTGTCAACACAATGTTTGCAGCATTG</genome_strand>
        <mrna_strand>AAAAAAGCTCCAGCTGAAAGAAAAAAAATTTGTTCATTCTTTTTCTGG................................................................................................................................................................................................................................................ATTTTGGGAAATCAAGGTTTTTTTTTTGTGTTCTATTGATTTTTGCGGTGGAAAAAGGGTGTAATGAGTGGTTCAAAATTGGAGGGGCCATCGGCTCCGGTGGTAAGACGAGACCCGTATGAAGTGTTGGCTGTGACGAGGGATTCGTCGGATCAGGAGATTAAGACTGCTTATAGAAAGCTTGCTCTCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCATCCTGACAAGAATGCTAACAATCCTGAAGCTTCAGAACATTTCAAGGAGGTTGCATACTCATATAGCATTCTATCTGATCCAGAGAAAAGGAGGCAATATGATATGGCTGGCTTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTGAAGCTGAAGGAATGGATATGGAAATTGATTTGTCCAACCTTGGAACTGTCAACACAATGTTTGCAGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341446" ref_strand="+" ref_description="SGN-E341446 [cTOE-23-I7]">
      <seq>tcagtcttgttgtgttcctgcattaggtgttgagaattcccttgctgcagcaaaatcatcgcgcacttttactccaagcgctccttctctgaactcctgtcttttcaactggaataccagcttgaccaatgctggatatgcaacacgtccgatcgataacatttttcaatttcacaaggcaatcagaaaggatttggaatttctggatgttgaatctggaaaactgactgattgtgatgagactttcctcaggaagttttgtggtcgttttcgtctcctacggggtttgtataaagctcacagtaatgcagaggatgatatagtatttccagctttggaatcaaaagagacgcttcataatgttagccattcttacaccttggaccacaaacaggaagaaaagctattcgaggatatatcatctgcacttgatgagctttctcagctccgtgaaaacttgaatggtgggagttcagttaaaggtccgtgtagaaactctggtgcttgtgacttacatgaatattcaagaaaatacaatgagctggcaactaaagttcaagccatgtgcaaatcgataaaagtaaccctggatcaacatgttatacgggaggaagttgagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0207N23.1" temp_strand="-" temp_description="C05HBa0207N23.1  AC225119.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0207N23 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="22387" stop="21166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22087" g_stop="21466" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0207N23.1" gen_strand="-" ref_id="SGN-E341446" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0207N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22087" e_stop="21466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTCTTGTTGTGTTCCTGCATTAGGTGTTGTGAATTCCCTTGCTGCAGCAAAATCATCGCGCACTTTTACTCCAAGCGCTCCTTCTCTGAACTCCTGTCTTTTCAACTGGAATACCAGCTTGACCAATGCTGGATATGCAACACGTCCGATCGATAACATTTTTCAATTTCACAAGGCAATCAGAAAGGATTTGGAATTTCTGGATGTTGAATCTGGAAAACTGACTGATTGTGATGAGACTTTCCTCAGGAAGTTTTGTGGTCGTTTTCGTCTCCTACGGGGTTTGTATAAAGCTCACAGTAATGCAGAGGATGATATAGTATTTCCAGCTTTGGAATCAAAAGAGACGCTTCATAATGTTAGCCATTCTTACACCTTGGACCACAAACAGGAAGAAAAGCTATTCGAGGATATATCATCTGCACTTGATGAGCTTTCTCAGCTCCGTGAAAACTTGAATGGTGGGAGTTCAGTTAAAGGTCCGTGTAGAAACTCTGGTGCTTGTGACTTACATGAATATTCAAGAAAATACAATGAGCTGGCAACTAAAGTTCAAGCCATGTGCAAATCGATAAAAGTAACCCTGGATCAACATGTTATACGGGAGGAAGTTGAGCTA</genome_strand>
        <mrna_strand>TCAGTCTTGTTGTGTTCCTGCATTAGGTGTTGAGAATTCCCTTGCTGCAGCAAAATCATCGCGCACTTTTACTCCAAGCGCTCCTTCTCTGAACTCCTGTCTTTTCAACTGGAATACCAGCTTGACCAATGCTGGATATGCAACACGTCCGATCGATAACATTTTTCAATTTCACAAGGCAATCAGAAAGGATTTGGAATTTCTGGATGTTGAATCTGGAAAACTGACTGATTGTGATGAGACTTTCCTCAGGAAGTTTTGTGGTCGTTTTCGTCTCCTACGGGGTTTGTATAAAGCTCACAGTAATGCAGAGGATGATATAGTATTTCCAGCTTTGGAATCAAAAGAGACGCTTCATAATGTTAGCCATTCTTACACCTTGGACCACAAACAGGAAGAAAAGCTATTCGAGGATATATCATCTGCACTTGATGAGCTTTCTCAGCTCCGTGAAAACTTGAATGGTGGGAGTTCAGTTAAAGGTCCGTGTAGAAACTCTGGTGCTTGTGACTTACATGAATATTCAAGAAAATACAATGAGCTGGCAACTAAAGTTCAAGCCATGTGCAAATCGATAAAAGTAACCCTGGATCAACATGTTATACGGGAGGAAGTTGAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740629" ref_strand="+" ref_description="SGN-E740629 [LC22BB04]">
      <seq>caattgttaacaaacaaacgcaaggcttgtgaagagagtagaacacacaataattcagattctgttgttagaggcttaattggtcaggcagagaatgttccttgtccttgtgaatcttctagcagggaatttcttgtctcaaatttgaatcttaaagaatccactctgaatcgcccggttgatgagatactgcattggcacaaggctattagaaaggagttgaatgacataacagaagcagctagggaaataaagttgcgtggagatttttctgatttatctgccttcaaccagaggcttcagtttattgctgaagtttgtatctttcatagtattgccgaggacaaagttatatttcctgcagtagatgcagaaatatcatttgcccaggagcatgcggaagaagaaaacgagtttgataaatttagatgcttgatagaaagcgttcagagtgctggatccaactcaacttctgtagaattttattcagaactgtgctcacaagctgatcatataatggagacagtggaaagacacttctgtaatgaggaggctcaggttcttccactcgcacgaaaacattttagcgccaaaaggcagcgggaactcctttaccagagcttgtgtgttatgccacttagactcatagaatgcgtcttaccatggttggtaggttcattaagtgaggaggaagcaaggtcttttcttcagaacatgcatctggcagcaccagcatcagacactgctttggtcacacttttctctggttgggcatgcaaaggtcgtccagatgacatttgtttatctttcagtgtaaccggttgctgtcctgctaaaatttagctgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0207N23.1" temp_strand="-" temp_description="C05HBa0207N23.1  AC225119.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0207N23 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="23841" stop="21977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23542" g_stop="23211" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23210" i_stop="23084" i_length="127">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23083" g_stop="22858" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="558" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22857" i_stop="22682" i_length="176">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22681" g_stop="22513" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="727" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22512" i_stop="22401" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.240" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22400" g_stop="22277" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="850" r_length="123" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0207N23.1" gen_strand="-" ref_id="SGN-E740629" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0207N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23542" e_stop="23211"/>
          <exon e_start="23083" e_stop="22858"/>
          <exon e_start="22681" e_stop="22513"/>
          <exon e_start="22400" e_stop="22277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTAACAAACAAACGCAAGGCTTGTGAAGAGAGTAGAACACACAATAATTCAGATTCTGTTGTTAGAGGCTTAATTGGTCAGGCAGAGAATGTTCCTTGTCCTTGTGAATCTTCTAGCAGGGAATTTCTTGTCTCAAATTTGAATCTTAAAGAATCCACTCTGAATCGCCCGGTTGATGAGATACTGCATTGGCACAAGGCTATTAGAAAGGAGTTGAATGACATAACAGAAGCAGCTAGGGAAATAAAGTTGCGTGGAGATTTTTCTGATTTATCTGCCTTCAACCAGAGGCTTCAGTTTATTGCTGAAGTTTGTATCTTTCATAGGTATGCAGCCTCACTATTATGCATATCTATTTGAAGTTTTGGCTTAAATAATTTTGACGGACTAATATATAACTGCTATGGTGCTTGAATCTGGATCATTCAAACTATTTTCATACTTTGACTGCAGTATTGCCGAGGACAAAGTTATATTTCCTGCAGTAGATGCAGAAATATCATTTGCCCAGGAGCATGCGGAAGAAGAAAACGAGTTTGATAAATTTAGATGCTTGATAGAAAGCGTTCAGAGTGCTGGATCCAACTCAACTTCTGTAGAATTTTATTCAGAACTGTGCTCACAAGCTGATCATATAATGGAGACAGTGGAAAGACACTTCTGTAATGAGGAGGCTCAGGTGAGTAATATCAGAATCAGAAATATTCTGCAAGTTCAATGTTTCGATCTTTAGATACAACAACATACCCGATGAAATTCCACAAGTATATACCCCCGTGTAAAAAAATAGTTATATCTCGGAAGTGATGAAAGTAGGTAATTGATCTTGATTATTTAGATTCTATGTGATCCCAGGTTCTTCCACTCGCACGAAAACATTTTAGCGCCAAAAGGCAGCGGGAACTCCTTTACCAGAGCTTGTGTGTTATGCCACTTAGACTCATAGAATGCGTCTTACCATGGTTGGTAGGTTCATTAAGTGAGGAGGAAGCAAGGTCTTTTCTTCAGAACATGCATCTGGCAGGTAAAGTCTAATTTCTACTGCTTGATACTTTCATTTAATTAAAACTTGGCTTCTGTGTTGACAATGATAGAAAGTATGCCTGTTCACCCCGTCTGTTTTGTTACTAATGCAGCACCAGCATCAGACACTGCTTTGGTCACACTTTTCTCTGGTTGGGCATGCAAAGGTCGTCCAGATGACATTTGTTTATCTTCAAGTGTAACCGGTTGCTGTCCTGCTAAAATTTTAGCTGGGAA</genome_strand>
        <mrna_strand>CAATTGTTAACAAACAAACGCAAGGCTTGTGAAGAGAGTAGAACACACAATAATTCAGATTCTGTTGTTAGAGGCTTAATTGGTCAGGCAGAGAATGTTCCTTGTCCTTGTGAATCTTCTAGCAGGGAATTTCTTGTCTCAAATTTGAATCTTAAAGAATCCACTCTGAATCGCCCGGTTGATGAGATACTGCATTGGCACAAGGCTATTAGAAAGGAGTTGAATGACATAACAGAAGCAGCTAGGGAAATAAAGTTGCGTGGAGATTTTTCTGATTTATCTGCCTTCAACCAGAGGCTTCAGTTTATTGCTGAAGTTTGTATCTTTCATAG...............................................................................................................................TATTGCCGAGGACAAAGTTATATTTCCTGCAGTAGATGCAGAAATATCATTTGCCCAGGAGCATGCGGAAGAAGAAAACGAGTTTGATAAATTTAGATGCTTGATAGAAAGCGTTCAGAGTGCTGGATCCAACTCAACTTCTGTAGAATTTTATTCAGAACTGTGCTCACAAGCTGATCATATAATGGAGACAGTGGAAAGACACTTCTGTAATGAGGAGGCTCAG................................................................................................................................................................................GTTCTTCCACTCGCACGAAAACATTTTAGCGCCAAAAGGCAGCGGGAACTCCTTTACCAGAGCTTGTGTGTTATGCCACTTAGACTCATAGAATGCGTCTTACCATGGTTGGTAGGTTCATTAAGTGAGGAGGAAGCAAGGTCTTTTCTTCAGAACATGCATCTGGCAG................................................................................................................CACCAGCATCAGACACTGCTTTGGTCACACTTTTCTCTGGTTGGGCATGCAAAGGTCGTCCAGATGACATTTGTTTATCTTTCAGTGTAACCGGTTGCTGTCCTGCTAAAA-TTTAGCTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259490" ref_strand="+" ref_description="SGN-E259490 [cLEG-42-A18]">
      <seq>accagctttaaaaatctttaaacaacaacctactattatattataaaacaaaaaaaactacacaaaatttcaactttcagtgagtttacttcaatggcgactcagtataatctttcgttaatcatcaagaatccatcaaatgaagatgaatttctacttgttaagcaaaacccacctcctaaattcaacgatcctgagtatgattctttttccgattcccctttatgggattttccttcttcaccattgttacctcttgattctccttcagataatcaattttctatacaagtccctgaatcttgctcagatgaggttgatttaagtaaatttgatcttaattcagctattcataaggttctagagcaagtggaattagaggataccccagttgagtggaaattcatgaagtatgtacaggagcctgaatttggaccaggattgccagtaaagacgatctacatcattggaactttgggtcctaaaaatggaaaattaaaggatgttgagttctgcaagtggatgaccactgaaggatgcattagtatgcttgctgaagtgaagccttgcaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0207N23.1" temp_strand="+" temp_description="C05HBa0207N23.1  AC225119.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0207N23 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="40596" stop="43974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40894" g_stop="41250" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41251" i_stop="42373" i_length="1123">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42374" g_stop="42518" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="502" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42519" i_stop="43600" i_length="1082">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43601" g_stop="43674" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="576" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0207N23.1" gen_strand="+" ref_id="SGN-E259490" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0207N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40894" e_stop="41250"/>
          <exon e_start="42374" e_stop="42518"/>
          <exon e_start="43601" e_stop="43674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGCTTTAAAAATCTTTAAACAACAACCTACTATTATATTATAAAACAAAAAAAACTACACAAAATTTCAACTTTCAGTGAGTTTACTTCAATGGCGACTCAGTATAATCTTTCGTTAATCATCAAGAATCCATCAAATGAAGATGAATTTCTACTTGTTAAGCAAAACCCACCTCCTAAATTCAACGATCCTGAGTATGATTCTTTTTCCGATTCCCCTTTATGGGATTTTCCTTCTTCACCATTGTTACCTCTTGATTCTCCTTCAGATAATCAATTTTCTATACAAGTCCCTGAATCTTGCTCAGATGAGGTTGATTTAAGTAAATTTGATCTTAATTCAGCTATTCATAAGGTAACGAAAGAAATTTTAGTAGCTCAGTTGGTTGGTTTCGTAAACTTTCGCTCTTTATTAGTTATGTTCGATTTCACACCTTGTAATCCCCTTCCCTTACTTAATTTCTTTAAAAAAAAATCCTTACTTTTTTGGGATAGAGGCATAATTGTTGTTGTTGTATCGCGGAGTTAGGTAGGATCAAGGGGTTTATTTGAACCTTCGGCAAAAAATTACACTCTTTATATCTGGTTTATATATGGAACTTCCTTTGGTTTCTTCGTGTCTTTAGTTTTTCATATTTTGAACCCCTTAGTGAAATTCTGGTTCCGCAGCTGGTTGTATCTGTATTTGCTTAGTTATTGGGGTAGGCAAGAAACTTACTTTGTTTACTCAGTTTACTCCTTTTATCTAAGATTATGGACTTTTAAGCATAGGGGTCAAGTTTTTTTTAATTTTGGACGTGAATTCGGAGAGATTGCTGTATTTTGTGAAGAATCTGCTCACCAACCACTTGAACTAAAAATAGCTGACAGATGTATAATCGATATTTAGTAGGTGTAATCACCTGTGCATAATGTATTGAACAGTAAATCCTGTCAGCTATTTGTGTGAAGATACATTTTTTTTCCAGAAAAAATGTTACAGGTCAATGTTTCTAAGAATTGAACATTAAGGATGCTAGCTCTACTTAAACATTTGCCGGAAATTTCATAGTATGAAGGCCCTTTTACGGAAAGAATGTAGATTTCTTGGTGAAATGAATACTAAATTGCTTTCAGCTTACTGCTGTTGCAGATTTTATCCTTTCAGTATCTGGATCTTGGTGGATTTGTCATTTTTAAATGATTAGTTATGAAATTTCATGTTTATTTGGCGCAATGAGTATATGTACTCCCTGTTGGGGCTTATTGAACTATCATTATGCCTTCATTATTCTTATGCCTATCATAACTATTGTTATCATGATCATAATAGTTGTAATTGTTGTAAAATCGCAAGTAGACTTCATGAAAGGTATGGTACTGTTTCTTATGCCTATCATAATTGTTTAAAGGAGACTCGTCTACATATGCTGCAGTCTATACATATGCATGTTTTGCAATATGAAGCTGTTAAAGCTTGTAGGTGATGATCATTGTAGGTTCTAGAGCAAGTGGAATTAGAGGATACCCCAGTTGAGTGGAAATTCATGAAGTATGTACAGGAGCCTGAATTTGGACCAGGATTGCCAGTAAAGACGATCTACATCATTGGAACTTTGGGTCCTAAAAATGGAAAATTAAAGGGTTCGACCAACTTCACTCAGTTCATATTTATCTTTTTTTTAAGTATTAGTATGAATACTGCTGTTGTGATTTAGCGGGGTCTTATGTTGTAGTCTTAGGAAGGAGGATCAATTGCCTCCCAATGTGAGCTTGCTCTTAGTCCAGTTGTAAGAGCAACGTATGTCATTGGAACTATGTTAGTTGTAATTTCCAGCTAAATTAGAACAAATTATTACTTGGTCTTTCCCAAAAGTATCCCCTTTTCTTAAGTAGAAACCTGATGTCACTCTTCAATACTTTTAGAATATTGTTCTGCTATGAAAATTAAAAGCATCCCTCCTTTTATCAATTATCTTTATCGAATTGCAAACTTGTCAAGAAGTAGTCTTAAATCTGCTTTAGGTGCGATAGATATTTCTGAAAGGCTATGTCATGTCAACTCTAATATTCATGTCTATGCCTAACCAAAGTAAGGCTATAAAGCTGAGATGGTGTGGCTTAATTGGTCGGTTGTTGTTAATAATCTAACAAGGTATACTACCAAAGCATATTTCACATATAATGCAGGTTACTAATTTCAGAAGTGTGATCCAATGTTGGAGAAGCATGATTGTTCTTCTACAAATATAACAGATTAGTTTCTCGAGAGATGGTCTGATTAGACTGATTCCTAACTGAATCTGATAAAGTATCTGTGAAATCAATTAGTGACTGCAATCTTTATCTGCGGTTCACATTTGCTTCAACTTTTCGAAAGGAGAAAGCACGTGGTGTCAAAACTCAGTTTGGTGGAATTTCACTCTCTTATCGTATCCCAAATTTGCAAGTCGAATTTAATGGATTCAGTATATAAGACTCTAGGGGTTAGAAACCATCATACATATTTTAACTGCTTCATTACCACTTATTGTCTATTGTGTATCTCCTCAGTGACTGAGAAATGACAACTGTCCTCCTTATGTATTTTCCCAAATGAGATAGCATCCATTATTTCTAATGGGTTATGAATGACAAAACTACCATCTTTTTATACCTCCCTAGCTCTCCTTTTTTCCTCTTGGGATGATTGTCAAGGTTGTAACATGGTAACTCATGCTGAACAGATGTTGAGTTCTGCAAGTGGATGACCACTGAAGGATGCATTAGTATGCTTGCTGAAGTGAAGCCTTGCAATGAC</genome_strand>
        <mrna_strand>ACCAGCTTTAAAAATCTTTAAACAACAACCTACTATTATATTATAAAACAAAAAAAACTACACAAAATTTCAACTTTCAGTGAGTTTACTTCAATGGCGACTCAGTATAATCTTTCGTTAATCATCAAGAATCCATCAAATGAAGATGAATTTCTACTTGTTAAGCAAAACCCACCTCCTAAATTCAACGATCCTGAGTATGATTCTTTTTCCGATTCCCCTTTATGGGATTTTCCTTCTTCACCATTGTTACCTCTTGATTCTCCTTCAGATAATCAATTTTCTATACAAGTCCCTGAATCTTGCTCAGATGAGGTTGATTTAAGTAAATTTGATCTTAATTCAGCTATTCATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTAGAGCAAGTGGAATTAGAGGATACCCCAGTTGAGTGGAAATTCATGAAGTATGTACAGGAGCCTGAATTTGGACCAGGATTGCCAGTAAAGACGATCTACATCATTGGAACTTTGGGTCCTAAAAATGGAAAATTAAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGAGTTCTGCAAGTGGATGACCACTGAAGGATGCATTAGTATGCTTGCTGAAGTGAAGCCTTGCAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368225" ref_strand="+" ref_description="SGN-E368225 [TUS-26-I10]">
      <seq>acagctttaaaaatctttaaacaacaacctactattatattataaaacaaaaaaaactacacaaaatttcaactttcagtgagtttacttcaatggcgactcagtataatctttcgttaatcatcaagaatccatcaaatgaagatgaatttctacttgttaagcaaaacccacctcctaaattcaacgatcctgagtatgattctttttccgattcccctttatgggattttccttcttcaccattgttacctcttgattttccttcagataatcaattttctatacaagtccctgaatcttgcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0207N23.1" temp_strand="+" temp_description="C05HBa0207N23.1  AC225119.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0207N23 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="40595" stop="41501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40895" g_stop="41198" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0207N23.1" gen_strand="+" ref_id="SGN-E368225" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0207N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40895" e_stop="41198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCTTTAAAAATCTTTAAACAACAACCTACTATTATATTATAAAACAAAAAAAACTACACAAAATTTCAACTTTCAGTGAGTTTACTTCAATGGCGACTCAGTATAATCTTTCGTTAATCATCAAGAATCCATCAAATGAAGATGAATTTCTACTTGTTAAGCAAAACCCACCTCCTAAATTCAACGATCCTGAGTATGATTCTTTTTCCGATTCCCCTTTATGGGATTTTCCTTCTTCACCATTGTTACCTCTTGATTCTCCTTCAGATAATCAATTTTCTATACAAGTCCCTGAATCTTG</genome_strand>
        <mrna_strand>ACAGCTTTAAAAATCTTTAAACAACAACCTACTATTATATTATAAAACAAAAAAAACTACACAAAATTTCAACTTTCAGTGAGTTTACTTCAATGGCGACTCAGTATAATCTTTCGTTAATCATCAAGAATCCATCAAATGAAGATGAATTTCTACTTGTTAAGCAAAACCCACCTCCTAAATTCAACGATCCTGAGTATGATTCTTTTTCCGATTCCCCTTTATGGGATTTTCCTTCTTCACCATTGTTACCTCTTGATTTTCCTTCAGATAATCAATTTTCTATACAAGTCCCTGAATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233222" ref_strand="+" ref_description="SGN-E233222 [cLED-6-E5]">
      <seq>atgattcaacaaaatctgggacatggaaaattcctcccaccttgaaatgtcaggagtaccctcttggtgttaaaattatacctatggaaagtagaacagctaaaccttttcgtacaacaaacttaattgttttcctgcctgaatgcaatgctaatgagcatgatgatggttttatcgctcatggggaagcactcatagtagacccaggatgtaagtcatcttcatatgaacagctcaaggaaatcattgctgctttgccgagaaaactagtcgtctttgtgacacatcatcataatgatcatgttgatggtctttcagtagtccagaagtacagtcccgatgctcgtcttttggctcatgaaaatacgattcgtcgaattagaaaagatgattggtctctcccatatgtttcagtttctggatctgaggaaatttgcattggcaatcagaaattaagaattatcttagcaccgggacatacagatggacatatggcactgcttcatgttagtacaaactcgttgatcgtaggggatcattgtgtgggccatagaagtgctctcttagatagcgcgtctggtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0207N23.1" temp_strand="+" temp_description="C05HBa0207N23.1  AC225119.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0207N23 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="43409" stop="48175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43709" g_stop="43761" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43762" i_stop="44314" i_length="553">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44315" g_stop="44494" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="233" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44495" i_stop="45441" i_length="947">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.567" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45442" g_stop="45517" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="309" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45518" i_stop="46020" i_length="503">
            <donor d_prob="0.841" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46021" g_stop="46098" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="387" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46099" i_stop="46849" i_length="751">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46850" g_stop="46935" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="473" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46936" i_stop="47462" i_length="527">
            <donor d_prob="0.086" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47463" g_stop="47536" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="547" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47537" i_stop="47838" i_length="302">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.667" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47839" g_stop="47875" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="584" r_length="37" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0207N23.1" gen_strand="+" ref_id="SGN-E233222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0207N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43709" e_stop="43761"/>
          <exon e_start="44315" e_stop="44494"/>
          <exon e_start="45442" e_stop="45517"/>
          <exon e_start="46021" e_stop="46098"/>
          <exon e_start="46850" e_stop="46935"/>
          <exon e_start="47463" e_stop="47536"/>
          <exon e_start="47839" e_stop="47875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTCAACAAAATCTGGGACATGGAAAATTCCTCCCACCTTGAAATGTCAGGTTAGTTATTATGTCTTGTGCTTGCTGACCTGTCAGTTCTGTCATTAAGAAATGAGAAATGAATAATACATGGACAACTAATGATATTCCATAAATACCAAATTGACGCTGATATTTCATGGGACAGAACGGGACGGGATGTAACTAGAATTTTTCTGAAAACCTGAAGTCAAGAAAGAACTTAAGGGACACTCTTATCAGAAACTCCCTGATATGGTCATTCATTCTCATTGTTCTTTGTTTCTGAAAGCGATTAAGTCAGCCAGAAATTGTTCATTCTGCACAACTTTGGTGGCTGTTGAGGCTTGTTGAAGTGTAATCACTAAACTTCATTTGAGATCTTTATCCTGAAGTTTCTCTTATTTGCACAAGCAGTTGAAATTTAATCTATATGTAAGATGGCAACTCCAGAAAGAATCCTCAGTCTGATAAGCAATGAATATCATAATGTTTGAACATGTATATGTGAAAATTTTGTGTCTTTGATTCTTTTTTACTATCTTAAGGACAACAATACTGTCCAGTAGGAGCTGATGTTTTTCTCATGTTGCAGGAGTACCCTCTTGGTGTTAAAATTATACCTATGGAAAGTAGAACAGCTAAACCTTTTCGTACAACAAACTTAATTGTTTTCCTGCCTGAATGCAATGCTAATGAGCATGATGATGGTTTTATCGCTCATGGGGAAGCACTCATAGTAGACCCAGGATGTAAGTCATCTTCATATGAACAGGTTAGAGCTAGTACATAATCTACTTGTTACTGTTTTTATAATGTGGAACAAACAAATGATATTTTCCCGGCCTTAGAAGTGAAGCCATAAAATGCAAAGAAAAATCCACTCAAGCAACTACTTTCACATATTTTAGTCTTAGGTGGATAGTGTGTAACAATTTCCTTTACTAAAGATAGATGCACTTGAATTGTTGTACACTTGCTGATACATTTCTATTGAAGTGCGAGACTTCCAGAGGTCTAACAGTGTCTTTGCGAATTCTCTGAAGATTGGTTGACTATAACTTTATAAGGGTCACGTAAACAAGCAATGGAGGCAAATTATAGTATGATACCTGAGAGAGTAAATTCTGAACAATTGTTGTAGGAGCTATGTTCGCTTCTGCTAAAGAATATTGGCCGTTACAAATTTTAGGTGACAGTATATAACAAATAATTAAAGAGACCCTTCACTATCCAAAAATCTGTCTTTAACAATTCCTGAGCAATTGACATGCTTCTTATCTCCATGTTTCCAAGCTTCCTGTATGTTTGCTTACCATATGCCTTAACGATTCACCTTTCTGGCTAAAGCCTTCTTTTCAAAACCTATGATCTTCCTTGCCGATTATGCGATGCTTACATATTGGATAAGAAAATAGTATATGTGGTTTGTTAAAGAAAATGTCAATTACGTTTTGTCACATTCAATAGAAAGATACAGTAGCGGAGGTAAAGCCGAAAATATTTGTTCAGACTTTAGTGTTTGTAGATTGAATAGCTTTACCTCAGCAATGAGTTCCTGCACATGTTTCTCTTTTCTATTTGTCTTGGTAATCTGTTTAGGAGTGGTTGAAACTCTTTTTATGCTTCTTCTGTTTGTTTTCATCTTTTTTCCTTTCTTGTAATTGGTTCTGCCTCTTATGCTGTTGTGACATCTCGATGCTCTGATGCTTGGATTACCAGCTCAAGGAAATCATTGCTGCTTTGCCGAGAAAACTAGTCGTCTTTGTGACACATCATCATAATGATCATGTTGATGGTAAGCAGCTTTCACATCCACGCTTGGAAACTTTCCCCTGCTTAGTGTCACAGCCTTATGCTATGCACAACATTTGATTTTTCTCACACTGATGTCATCATACTCATCAAGGGTTATCTTTATGTATTTTTGTTTTATTTCAAATGATCTTTCTTGAGCCGTCTGGACAAGATCTACGTTTCATGTAAAGTTATTACAAGTTTCAGTTTCTTTGTATCCGGCCCTTTTTATGTATTGGAAAAAATTAGTGCTATTTTTGCAGTTACGAAAAAATTTCTTTATAGACATTTGGCTGGCTTGTCAGCAACAGTTGGTTGATTAACTGCAACATGTATTTATTGGATGTCTATTTCAATAGAAGCTGGAAAACATCTATTAAATGATGAATAGTTTCTTTAATTTTGTTATCTAAAGTATTATTCTCCATACTTTTTTCACCAGACTAATCTGTAGTTTTTGTAAGTAATTTCTGAACATAAACTTGTGCTACCTGCTATGCTCAGGTCTTTCAGTAGTCCAGAAGTACAGTCCCGATGCTCGTCTTTTGGCTCATGAAAATACGATTCGTCGAATTAGAAAAGGTCAGAAAATTTTCAATTCTGTAGAATAGTGTCTATCTTGCCATAATTGAATCACTTTTTTGTTTAAAGAGCTACGCTTTTACTTTACGTTCTATGCTTTTCTAGAAGTTTTATCTAGCTTTTTAGAAGATTTATTTGTCAGTAGAAAACCTAAAGAACTTCTAGTACTTATTGTCATTATAATCATTATTTTTATTTTATATATGGTATTGGCCTAAGATGAATTTAAATGGAGAACTTGATCAATGAGGATTCATATAGCCAACCGTAACCTATTTGGGAGTGAGGCGTCATGTTATTGTTTAAATAGCTAGCAAGGGTTGCGGGTCTATACCCTTTTTTGGTCATGAAAAGAAGAGGGGGAACTATTATGATGAAGGATGACTTTTATGTTTGTCCTTTGTTGTTAAAAGGCAATTGCTTTTCATGCAAGAATGTATTTTCCGTGATAATGGGCTTACAAAGAGACATGCCATATGATGGACTTGTTTTGATGTTCGTAGCAATTTTTAATTTTTTTTTGGGTGGGTGGGTGGGTGGGTGGGGGGATCAATAACTTCTCATTTTGGCTAACAGGAATAGTTTCTAGTTGACTATGATGACTCTATTAGTGTACATTCAAGTGAGCATAAAATATACGCATGTTCGTGCACCATTTACAGCTTACTGATCTCACAGTATGTGTGGAAGTGAAATATTCTTTATCAAGTAAATGCATTTAATAACTTAAAGTAATTTCCATGTGATGCAGATGATTGGTCTCTCCCATATGTTTCAGTTTCTGGATCTGAGGAAATTTGCATTGGCAATCAGAAATTAAGAATTATCTTAGCACCGGTAATCTCCATTTATATCCTAGCTTCCTCTGATGAGAATCAGCACCCCCATGAAATTCTGTTTTTGACATTCATTTTTGTTGATTCTCTTCTGGTACTTGCTTCTTTATAGAAGAGATTCATGGTATTACGAGTAATCTATGCTCAGATTTTGACTTTTGCTTCAGAAATGAACCATTCGAGATTCTCACGGGGCAGAAAGCTTGTCATATCTATAAAGTCTTGTCAATAGAATTTTATGACATTGATAGGTTTTTAAGTAATGAGAGTGATTGTACTGCTACCTTTAAAACATATTTACTAGAGCATGGTGAATTTGTGTTTGAACTTAATACTAGAAGTTGTAAGAAGTGAATTAATTTAAAAGTTAGCTCCTAGTTTCTGAAATGGAATTTTCTTTGTAATGCAAGTAATCTCTTAGTTTTACTTCTGTGTTTACTCAACCCTCCATGCAAAACATTCCAATTTTCTTGTACAATTTTTTCTGGAATTTTAACACGTTCTTTTGGTGACAATATTGTGATTCAGGGACATACAGATGGACATATGGCACTGCTTCATGTTAGTACAAACTCGTTGATCGTAGGGGATCATTGTGTGGGGTAAGATATGTTTGATCAAGAAACTTCATATCCTTTAACAAATGAATATTTTCACTTGATAAATAATTTGTGGACATGATTACCAATTTTAAATGTAGCTTCCCCCGAAATAGTAATAATAAAAAAATGCAGTTTCCTAGTCCTTTTGAACAATTCTTTTAGCTTTTCTATGATGATACGGAAAACAATCTGTTCAACAAGTCTGTGATTGTGTTGGCCTACTTTGCATTTGTTTGTGATAGCTTCTCAATTTCTTCTCCTTTCTTAAAAATTGCTAATTTGATGTATCCCGTTGGTTTCAGCCAAGGAAGTGCTCTCTTAGATAGCGCGTCTGGTGGA</genome_strand>
        <mrna_strand>ATGATTCAACAAAATCTGGGACATGGAAAATTCCTCCCACCTTGAAATGTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTACCCTCTTGGTGTTAAAATTATACCTATGGAAAGTAGAACAGCTAAACCTTTTCGTACAACAAACTTAATTGTTTTCCTGCCTGAATGCAATGCTAATGAGCATGATGATGGTTTTATCGCTCATGGGGAAGCACTCATAGTAGACCCAGGATGTAAGTCATCTTCATATGAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGGAAATCATTGCTGCTTTGCCGAGAAAACTAGTCGTCTTTGTGACACATCATCATAATGATCATGTTGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTCAGTAGTCCAGAAGTACAGTCCCGATGCTCGTCTTTTGGCTCATGAAAATACGATTCGTCGAATTAGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTGGTCTCTCCCATATGTTTCAGTTTCTGGATCTGAGGAAATTTGCATTGGCAATCAGAAATTAAGAATTATCTTAGCACCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATACAGATGGACATATGGCACTGCTTCATGTTAGTACAAACTCGTTGATCGTAGGGGATCATTGTGTGGG..............................................................................................................................................................................................................................................................................................................CCATAGAAGTGCTCTCTTAGATAGCGCGTCTGGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243894" ref_strand="+" ref_description="SGN-E243894 [cLED-35-B11]">
      <seq>atgattcaacaaaatctgggacatggaaaattcctcccaccttgaaatgtcaggagtaccctcttggtgttaaaattatacctatggaaagtagaacagctaaacctttttgtacaacaaacttaattgttttcctgcctgaatgcaatgctaatgagcatgatgatggttttatcgctcatggggaagcactcatagtagacccaggatgtaagtcatcttcatatgaacagctcaaggaaatcattgctgctttgccgagaaaactagtcgtctttgtgacacatcatcataatgatcatgttgatggtctttcagtagtccagaagtacagtcccgatgctcgtcttttggctcatgaaaatacgattcgtcgaattagaaaagatgattggtctctcccatatgtttcagtttctggatctgaggaaatttgcattggcaatcagaaattaagaattatcttagcaccgggacatacagatggacatatggcactgcttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0207N23.1" temp_strand="+" temp_description="C05HBa0207N23.1  AC225119.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0207N23 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="43409" stop="47796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43709" g_stop="43761" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43762" i_stop="44314" i_length="553">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44315" g_stop="44494" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="233" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44495" i_stop="45441" i_length="947">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.567" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45442" g_stop="45517" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="309" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45518" i_stop="46020" i_length="503">
            <donor d_prob="0.841" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46021" g_stop="46098" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="387" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46099" i_stop="46849" i_length="751">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46850" g_stop="46935" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="473" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46936" i_stop="47462" i_length="527">
            <donor d_prob="0.086" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47463" g_stop="47496" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="507" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0207N23.1" gen_strand="+" ref_id="SGN-E243894" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0207N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43709" e_stop="43761"/>
          <exon e_start="44315" e_stop="44494"/>
          <exon e_start="45442" e_stop="45517"/>
          <exon e_start="46021" e_stop="46098"/>
          <exon e_start="46850" e_stop="46935"/>
          <exon e_start="47463" e_stop="47496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTCAACAAAATCTGGGACATGGAAAATTCCTCCCACCTTGAAATGTCAGGTTAGTTATTATGTCTTGTGCTTGCTGACCTGTCAGTTCTGTCATTAAGAAATGAGAAATGAATAATACATGGACAACTAATGATATTCCATAAATACCAAATTGACGCTGATATTTCATGGGACAGAACGGGACGGGATGTAACTAGAATTTTTCTGAAAACCTGAAGTCAAGAAAGAACTTAAGGGACACTCTTATCAGAAACTCCCTGATATGGTCATTCATTCTCATTGTTCTTTGTTTCTGAAAGCGATTAAGTCAGCCAGAAATTGTTCATTCTGCACAACTTTGGTGGCTGTTGAGGCTTGTTGAAGTGTAATCACTAAACTTCATTTGAGATCTTTATCCTGAAGTTTCTCTTATTTGCACAAGCAGTTGAAATTTAATCTATATGTAAGATGGCAACTCCAGAAAGAATCCTCAGTCTGATAAGCAATGAATATCATAATGTTTGAACATGTATATGTGAAAATTTTGTGTCTTTGATTCTTTTTTACTATCTTAAGGACAACAATACTGTCCAGTAGGAGCTGATGTTTTTCTCATGTTGCAGGAGTACCCTCTTGGTGTTAAAATTATACCTATGGAAAGTAGAACAGCTAAACCTTTTCGTACAACAAACTTAATTGTTTTCCTGCCTGAATGCAATGCTAATGAGCATGATGATGGTTTTATCGCTCATGGGGAAGCACTCATAGTAGACCCAGGATGTAAGTCATCTTCATATGAACAGGTTAGAGCTAGTACATAATCTACTTGTTACTGTTTTTATAATGTGGAACAAACAAATGATATTTTCCCGGCCTTAGAAGTGAAGCCATAAAATGCAAAGAAAAATCCACTCAAGCAACTACTTTCACATATTTTAGTCTTAGGTGGATAGTGTGTAACAATTTCCTTTACTAAAGATAGATGCACTTGAATTGTTGTACACTTGCTGATACATTTCTATTGAAGTGCGAGACTTCCAGAGGTCTAACAGTGTCTTTGCGAATTCTCTGAAGATTGGTTGACTATAACTTTATAAGGGTCACGTAAACAAGCAATGGAGGCAAATTATAGTATGATACCTGAGAGAGTAAATTCTGAACAATTGTTGTAGGAGCTATGTTCGCTTCTGCTAAAGAATATTGGCCGTTACAAATTTTAGGTGACAGTATATAACAAATAATTAAAGAGACCCTTCACTATCCAAAAATCTGTCTTTAACAATTCCTGAGCAATTGACATGCTTCTTATCTCCATGTTTCCAAGCTTCCTGTATGTTTGCTTACCATATGCCTTAACGATTCACCTTTCTGGCTAAAGCCTTCTTTTCAAAACCTATGATCTTCCTTGCCGATTATGCGATGCTTACATATTGGATAAGAAAATAGTATATGTGGTTTGTTAAAGAAAATGTCAATTACGTTTTGTCACATTCAATAGAAAGATACAGTAGCGGAGGTAAAGCCGAAAATATTTGTTCAGACTTTAGTGTTTGTAGATTGAATAGCTTTACCTCAGCAATGAGTTCCTGCACATGTTTCTCTTTTCTATTTGTCTTGGTAATCTGTTTAGGAGTGGTTGAAACTCTTTTTATGCTTCTTCTGTTTGTTTTCATCTTTTTTCCTTTCTTGTAATTGGTTCTGCCTCTTATGCTGTTGTGACATCTCGATGCTCTGATGCTTGGATTACCAGCTCAAGGAAATCATTGCTGCTTTGCCGAGAAAACTAGTCGTCTTTGTGACACATCATCATAATGATCATGTTGATGGTAAGCAGCTTTCACATCCACGCTTGGAAACTTTCCCCTGCTTAGTGTCACAGCCTTATGCTATGCACAACATTTGATTTTTCTCACACTGATGTCATCATACTCATCAAGGGTTATCTTTATGTATTTTTGTTTTATTTCAAATGATCTTTCTTGAGCCGTCTGGACAAGATCTACGTTTCATGTAAAGTTATTACAAGTTTCAGTTTCTTTGTATCCGGCCCTTTTTATGTATTGGAAAAAATTAGTGCTATTTTTGCAGTTACGAAAAAATTTCTTTATAGACATTTGGCTGGCTTGTCAGCAACAGTTGGTTGATTAACTGCAACATGTATTTATTGGATGTCTATTTCAATAGAAGCTGGAAAACATCTATTAAATGATGAATAGTTTCTTTAATTTTGTTATCTAAAGTATTATTCTCCATACTTTTTTCACCAGACTAATCTGTAGTTTTTGTAAGTAATTTCTGAACATAAACTTGTGCTACCTGCTATGCTCAGGTCTTTCAGTAGTCCAGAAGTACAGTCCCGATGCTCGTCTTTTGGCTCATGAAAATACGATTCGTCGAATTAGAAAAGGTCAGAAAATTTTCAATTCTGTAGAATAGTGTCTATCTTGCCATAATTGAATCACTTTTTTGTTTAAAGAGCTACGCTTTTACTTTACGTTCTATGCTTTTCTAGAAGTTTTATCTAGCTTTTTAGAAGATTTATTTGTCAGTAGAAAACCTAAAGAACTTCTAGTACTTATTGTCATTATAATCATTATTTTTATTTTATATATGGTATTGGCCTAAGATGAATTTAAATGGAGAACTTGATCAATGAGGATTCATATAGCCAACCGTAACCTATTTGGGAGTGAGGCGTCATGTTATTGTTTAAATAGCTAGCAAGGGTTGCGGGTCTATACCCTTTTTTGGTCATGAAAAGAAGAGGGGGAACTATTATGATGAAGGATGACTTTTATGTTTGTCCTTTGTTGTTAAAAGGCAATTGCTTTTCATGCAAGAATGTATTTTCCGTGATAATGGGCTTACAAAGAGACATGCCATATGATGGACTTGTTTTGATGTTCGTAGCAATTTTTAATTTTTTTTTGGGTGGGTGGGTGGGTGGGTGGGGGGATCAATAACTTCTCATTTTGGCTAACAGGAATAGTTTCTAGTTGACTATGATGACTCTATTAGTGTACATTCAAGTGAGCATAAAATATACGCATGTTCGTGCACCATTTACAGCTTACTGATCTCACAGTATGTGTGGAAGTGAAATATTCTTTATCAAGTAAATGCATTTAATAACTTAAAGTAATTTCCATGTGATGCAGATGATTGGTCTCTCCCATATGTTTCAGTTTCTGGATCTGAGGAAATTTGCATTGGCAATCAGAAATTAAGAATTATCTTAGCACCGGTAATCTCCATTTATATCCTAGCTTCCTCTGATGAGAATCAGCACCCCCATGAAATTCTGTTTTTGACATTCATTTTTGTTGATTCTCTTCTGGTACTTGCTTCTTTATAGAAGAGATTCATGGTATTACGAGTAATCTATGCTCAGATTTTGACTTTTGCTTCAGAAATGAACCATTCGAGATTCTCACGGGGCAGAAAGCTTGTCATATCTATAAAGTCTTGTCAATAGAATTTTATGACATTGATAGGTTTTTAAGTAATGAGAGTGATTGTACTGCTACCTTTAAAACATATTTACTAGAGCATGGTGAATTTGTGTTTGAACTTAATACTAGAAGTTGTAAGAAGTGAATTAATTTAAAAGTTAGCTCCTAGTTTCTGAAATGGAATTTTCTTTGTAATGCAAGTAATCTCTTAGTTTTACTTCTGTGTTTACTCAACCCTCCATGCAAAACATTCCAATTTTCTTGTACAATTTTTTCTGGAATTTTAACACGTTCTTTTGGTGACAATATTGTGATTCAGGGACATACAGATGGACATATGGCACTGCTTCATG</genome_strand>
        <mrna_strand>ATGATTCAACAAAATCTGGGACATGGAAAATTCCTCCCACCTTGAAATGTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTACCCTCTTGGTGTTAAAATTATACCTATGGAAAGTAGAACAGCTAAACCTTTTTGTACAACAAACTTAATTGTTTTCCTGCCTGAATGCAATGCTAATGAGCATGATGATGGTTTTATCGCTCATGGGGAAGCACTCATAGTAGACCCAGGATGTAAGTCATCTTCATATGAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGGAAATCATTGCTGCTTTGCCGAGAAAACTAGTCGTCTTTGTGACACATCATCATAATGATCATGTTGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTCAGTAGTCCAGAAGTACAGTCCCGATGCTCGTCTTTTGGCTCATGAAAATACGATTCGTCGAATTAGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTGGTCTCTCCCATATGTTTCAGTTTCTGGATCTGAGGAAATTTGCATTGGCAATCAGAAATTAAGAATTATCTTAGCACCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATACAGATGGACATATGGCACTGCTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236521" ref_strand="+" ref_description="SGN-E236521 [cLED-13-I3]">
      <seq>atgattcaacaaaatctgggacatggaaaattcctcccaccttgaaatgtcaggagtaccctcttggtgttaaaattatacctatggaaagtagaacagctaaaccttttcgtacaacaaacttaattgttttcctgcctgaatgcaatgctaatgagcatgatgatggttttatcgctcatggggaagcactcatagtagacccaggatgtaagtcatcttcatatgaacagctcaaggaaatcattgctgctttgccgagaaaactagtcgtctttgtgacacatcatcataatgatcatgttgatggtctttcagtagtccagaagtacagtcccgatgctcgtcttttggctcatgaaaatacgattcgtcgaattagaaaagatgattggtctctcccatatgtttcagtttctggatctgaggaaatttgcattggcaatcagaaattaagaattatcttagcaccgggacatacagatggacatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0207N23.1" temp_strand="+" temp_description="C05HBa0207N23.1  AC225119.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0207N23 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="43409" stop="47783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43709" g_stop="43761" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43762" i_stop="44314" i_length="553">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44315" g_stop="44494" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="233" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44495" i_stop="45441" i_length="947">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.567" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45442" g_stop="45517" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="309" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45518" i_stop="46020" i_length="503">
            <donor d_prob="0.841" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46021" g_stop="46098" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="387" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46099" i_stop="46849" i_length="751">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46850" g_stop="46935" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="473" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46936" i_stop="47462" i_length="527">
            <donor d_prob="0.086" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47463" g_stop="47483" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="494" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0207N23.1" gen_strand="+" ref_id="SGN-E236521" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0207N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43709" e_stop="43761"/>
          <exon e_start="44315" e_stop="44494"/>
          <exon e_start="45442" e_stop="45517"/>
          <exon e_start="46021" e_stop="46098"/>
          <exon e_start="46850" e_stop="46935"/>
          <exon e_start="47463" e_stop="47483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTCAACAAAATCTGGGACATGGAAAATTCCTCCCACCTTGAAATGTCAGGTTAGTTATTATGTCTTGTGCTTGCTGACCTGTCAGTTCTGTCATTAAGAAATGAGAAATGAATAATACATGGACAACTAATGATATTCCATAAATACCAAATTGACGCTGATATTTCATGGGACAGAACGGGACGGGATGTAACTAGAATTTTTCTGAAAACCTGAAGTCAAGAAAGAACTTAAGGGACACTCTTATCAGAAACTCCCTGATATGGTCATTCATTCTCATTGTTCTTTGTTTCTGAAAGCGATTAAGTCAGCCAGAAATTGTTCATTCTGCACAACTTTGGTGGCTGTTGAGGCTTGTTGAAGTGTAATCACTAAACTTCATTTGAGATCTTTATCCTGAAGTTTCTCTTATTTGCACAAGCAGTTGAAATTTAATCTATATGTAAGATGGCAACTCCAGAAAGAATCCTCAGTCTGATAAGCAATGAATATCATAATGTTTGAACATGTATATGTGAAAATTTTGTGTCTTTGATTCTTTTTTACTATCTTAAGGACAACAATACTGTCCAGTAGGAGCTGATGTTTTTCTCATGTTGCAGGAGTACCCTCTTGGTGTTAAAATTATACCTATGGAAAGTAGAACAGCTAAACCTTTTCGTACAACAAACTTAATTGTTTTCCTGCCTGAATGCAATGCTAATGAGCATGATGATGGTTTTATCGCTCATGGGGAAGCACTCATAGTAGACCCAGGATGTAAGTCATCTTCATATGAACAGGTTAGAGCTAGTACATAATCTACTTGTTACTGTTTTTATAATGTGGAACAAACAAATGATATTTTCCCGGCCTTAGAAGTGAAGCCATAAAATGCAAAGAAAAATCCACTCAAGCAACTACTTTCACATATTTTAGTCTTAGGTGGATAGTGTGTAACAATTTCCTTTACTAAAGATAGATGCACTTGAATTGTTGTACACTTGCTGATACATTTCTATTGAAGTGCGAGACTTCCAGAGGTCTAACAGTGTCTTTGCGAATTCTCTGAAGATTGGTTGACTATAACTTTATAAGGGTCACGTAAACAAGCAATGGAGGCAAATTATAGTATGATACCTGAGAGAGTAAATTCTGAACAATTGTTGTAGGAGCTATGTTCGCTTCTGCTAAAGAATATTGGCCGTTACAAATTTTAGGTGACAGTATATAACAAATAATTAAAGAGACCCTTCACTATCCAAAAATCTGTCTTTAACAATTCCTGAGCAATTGACATGCTTCTTATCTCCATGTTTCCAAGCTTCCTGTATGTTTGCTTACCATATGCCTTAACGATTCACCTTTCTGGCTAAAGCCTTCTTTTCAAAACCTATGATCTTCCTTGCCGATTATGCGATGCTTACATATTGGATAAGAAAATAGTATATGTGGTTTGTTAAAGAAAATGTCAATTACGTTTTGTCACATTCAATAGAAAGATACAGTAGCGGAGGTAAAGCCGAAAATATTTGTTCAGACTTTAGTGTTTGTAGATTGAATAGCTTTACCTCAGCAATGAGTTCCTGCACATGTTTCTCTTTTCTATTTGTCTTGGTAATCTGTTTAGGAGTGGTTGAAACTCTTTTTATGCTTCTTCTGTTTGTTTTCATCTTTTTTCCTTTCTTGTAATTGGTTCTGCCTCTTATGCTGTTGTGACATCTCGATGCTCTGATGCTTGGATTACCAGCTCAAGGAAATCATTGCTGCTTTGCCGAGAAAACTAGTCGTCTTTGTGACACATCATCATAATGATCATGTTGATGGTAAGCAGCTTTCACATCCACGCTTGGAAACTTTCCCCTGCTTAGTGTCACAGCCTTATGCTATGCACAACATTTGATTTTTCTCACACTGATGTCATCATACTCATCAAGGGTTATCTTTATGTATTTTTGTTTTATTTCAAATGATCTTTCTTGAGCCGTCTGGACAAGATCTACGTTTCATGTAAAGTTATTACAAGTTTCAGTTTCTTTGTATCCGGCCCTTTTTATGTATTGGAAAAAATTAGTGCTATTTTTGCAGTTACGAAAAAATTTCTTTATAGACATTTGGCTGGCTTGTCAGCAACAGTTGGTTGATTAACTGCAACATGTATTTATTGGATGTCTATTTCAATAGAAGCTGGAAAACATCTATTAAATGATGAATAGTTTCTTTAATTTTGTTATCTAAAGTATTATTCTCCATACTTTTTTCACCAGACTAATCTGTAGTTTTTGTAAGTAATTTCTGAACATAAACTTGTGCTACCTGCTATGCTCAGGTCTTTCAGTAGTCCAGAAGTACAGTCCCGATGCTCGTCTTTTGGCTCATGAAAATACGATTCGTCGAATTAGAAAAGGTCAGAAAATTTTCAATTCTGTAGAATAGTGTCTATCTTGCCATAATTGAATCACTTTTTTGTTTAAAGAGCTACGCTTTTACTTTACGTTCTATGCTTTTCTAGAAGTTTTATCTAGCTTTTTAGAAGATTTATTTGTCAGTAGAAAACCTAAAGAACTTCTAGTACTTATTGTCATTATAATCATTATTTTTATTTTATATATGGTATTGGCCTAAGATGAATTTAAATGGAGAACTTGATCAATGAGGATTCATATAGCCAACCGTAACCTATTTGGGAGTGAGGCGTCATGTTATTGTTTAAATAGCTAGCAAGGGTTGCGGGTCTATACCCTTTTTTGGTCATGAAAAGAAGAGGGGGAACTATTATGATGAAGGATGACTTTTATGTTTGTCCTTTGTTGTTAAAAGGCAATTGCTTTTCATGCAAGAATGTATTTTCCGTGATAATGGGCTTACAAAGAGACATGCCATATGATGGACTTGTTTTGATGTTCGTAGCAATTTTTAATTTTTTTTTGGGTGGGTGGGTGGGTGGGTGGGGGGATCAATAACTTCTCATTTTGGCTAACAGGAATAGTTTCTAGTTGACTATGATGACTCTATTAGTGTACATTCAAGTGAGCATAAAATATACGCATGTTCGTGCACCATTTACAGCTTACTGATCTCACAGTATGTGTGGAAGTGAAATATTCTTTATCAAGTAAATGCATTTAATAACTTAAAGTAATTTCCATGTGATGCAGATGATTGGTCTCTCCCATATGTTTCAGTTTCTGGATCTGAGGAAATTTGCATTGGCAATCAGAAATTAAGAATTATCTTAGCACCGGTAATCTCCATTTATATCCTAGCTTCCTCTGATGAGAATCAGCACCCCCATGAAATTCTGTTTTTGACATTCATTTTTGTTGATTCTCTTCTGGTACTTGCTTCTTTATAGAAGAGATTCATGGTATTACGAGTAATCTATGCTCAGATTTTGACTTTTGCTTCAGAAATGAACCATTCGAGATTCTCACGGGGCAGAAAGCTTGTCATATCTATAAAGTCTTGTCAATAGAATTTTATGACATTGATAGGTTTTTAAGTAATGAGAGTGATTGTACTGCTACCTTTAAAACATATTTACTAGAGCATGGTGAATTTGTGTTTGAACTTAATACTAGAAGTTGTAAGAAGTGAATTAATTTAAAAGTTAGCTCCTAGTTTCTGAAATGGAATTTTCTTTGTAATGCAAGTAATCTCTTAGTTTTACTTCTGTGTTTACTCAACCCTCCATGCAAAACATTCCAATTTTCTTGTACAATTTTTTCTGGAATTTTAACACGTTCTTTTGGTGACAATATTGTGATTCAGGGACATACAGATGGACATATG</genome_strand>
        <mrna_strand>ATGATTCAACAAAATCTGGGACATGGAAAATTCCTCCCACCTTGAAATGTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTACCCTCTTGGTGTTAAAATTATACCTATGGAAAGTAGAACAGCTAAACCTTTTCGTACAACAAACTTAATTGTTTTCCTGCCTGAATGCAATGCTAATGAGCATGATGATGGTTTTATCGCTCATGGGGAAGCACTCATAGTAGACCCAGGATGTAAGTCATCTTCATATGAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGGAAATCATTGCTGCTTTGCCGAGAAAACTAGTCGTCTTTGTGACACATCATCATAATGATCATGTTGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTCAGTAGTCCAGAAGTACAGTCCCGATGCTCGTCTTTTGGCTCATGAAAATACGATTCGTCGAATTAGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTGGTCTCTCCCATATGTTTCAGTTTCTGGATCTGAGGAAATTTGCATTGGCAATCAGAAATTAAGAATTATCTTAGCACCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATACAGATGGACATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323478" ref_strand="+" ref_description="SGN-E323478 [cTOC-7-I1]">
      <seq>aggatgtaagtcatcttcatatgaacagctcaaggaaatcattgctgctttgccgagaaaactagtcgtctttgtgacacatcatcataatgatcatgttgatggtctttcagtagtccagaagtacagtcccgatgctcgtcttttggctcatgaaaatacgattcgtcgaattagaaaagatgattggtctctcccatatgtttcagtttctggatctgaggaaatttgcattggcaatcagaaattaagaattatcttagcaccgggacatacagatggacatatggcactgcttcatgttagtacaaactcgttgatcgtaggggatcattgtgtgggccaaggaagtgctctcttagatagcgcgtctggtggaaatatgcaggattactttcagacaacatacaaattcattgagctctctcctcatgcgttgattcccatgcacggaagaactaatatgtggccaaaacacatgctctgtgggtatctcaaaaaccggagaaacagagaatcaaccatcttaatggcaatagagaatggtgctaaaacattgtttgacataattgcttacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0207N23.1" temp_strand="+" temp_description="C05HBa0207N23.1  AC225119.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0207N23 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="44167" stop="49634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44467" g_stop="44494" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44495" i_stop="45441" i_length="947">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.567" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45442" g_stop="45517" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="104" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45518" i_stop="46020" i_length="503">
            <donor d_prob="0.841" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46021" g_stop="46098" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="182" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46099" i_stop="46849" i_length="751">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46850" g_stop="46935" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="268" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46936" i_stop="47462" i_length="527">
            <donor d_prob="0.086" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47463" g_stop="47536" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="342" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47537" i_stop="47838" i_length="302">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.667" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47839" g_stop="47884" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="388" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47885" i_stop="48876" i_length="992">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48877" g_stop="48986" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="498" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="48987" i_stop="49348" i_length="362">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="49349" g_stop="49430" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="580" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0207N23.1" gen_strand="+" ref_id="SGN-E323478" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0207N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44467" e_stop="44494"/>
          <exon e_start="45442" e_stop="45517"/>
          <exon e_start="46021" e_stop="46098"/>
          <exon e_start="46850" e_stop="46935"/>
          <exon e_start="47463" e_stop="47536"/>
          <exon e_start="47839" e_stop="47884"/>
          <exon e_start="48877" e_stop="48986"/>
          <exon e_start="49349" e_stop="49430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATGTAAGTCATCTTCATATGAACAGGTTAGAGCTAGTACATAATCTACTTGTTACTGTTTTTATAATGTGGAACAAACAAATGATATTTTCCCGGCCTTAGAAGTGAAGCCATAAAATGCAAAGAAAAATCCACTCAAGCAACTACTTTCACATATTTTAGTCTTAGGTGGATAGTGTGTAACAATTTCCTTTACTAAAGATAGATGCACTTGAATTGTTGTACACTTGCTGATACATTTCTATTGAAGTGCGAGACTTCCAGAGGTCTAACAGTGTCTTTGCGAATTCTCTGAAGATTGGTTGACTATAACTTTATAAGGGTCACGTAAACAAGCAATGGAGGCAAATTATAGTATGATACCTGAGAGAGTAAATTCTGAACAATTGTTGTAGGAGCTATGTTCGCTTCTGCTAAAGAATATTGGCCGTTACAAATTTTAGGTGACAGTATATAACAAATAATTAAAGAGACCCTTCACTATCCAAAAATCTGTCTTTAACAATTCCTGAGCAATTGACATGCTTCTTATCTCCATGTTTCCAAGCTTCCTGTATGTTTGCTTACCATATGCCTTAACGATTCACCTTTCTGGCTAAAGCCTTCTTTTCAAAACCTATGATCTTCCTTGCCGATTATGCGATGCTTACATATTGGATAAGAAAATAGTATATGTGGTTTGTTAAAGAAAATGTCAATTACGTTTTGTCACATTCAATAGAAAGATACAGTAGCGGAGGTAAAGCCGAAAATATTTGTTCAGACTTTAGTGTTTGTAGATTGAATAGCTTTACCTCAGCAATGAGTTCCTGCACATGTTTCTCTTTTCTATTTGTCTTGGTAATCTGTTTAGGAGTGGTTGAAACTCTTTTTATGCTTCTTCTGTTTGTTTTCATCTTTTTTCCTTTCTTGTAATTGGTTCTGCCTCTTATGCTGTTGTGACATCTCGATGCTCTGATGCTTGGATTACCAGCTCAAGGAAATCATTGCTGCTTTGCCGAGAAAACTAGTCGTCTTTGTGACACATCATCATAATGATCATGTTGATGGTAAGCAGCTTTCACATCCACGCTTGGAAACTTTCCCCTGCTTAGTGTCACAGCCTTATGCTATGCACAACATTTGATTTTTCTCACACTGATGTCATCATACTCATCAAGGGTTATCTTTATGTATTTTTGTTTTATTTCAAATGATCTTTCTTGAGCCGTCTGGACAAGATCTACGTTTCATGTAAAGTTATTACAAGTTTCAGTTTCTTTGTATCCGGCCCTTTTTATGTATTGGAAAAAATTAGTGCTATTTTTGCAGTTACGAAAAAATTTCTTTATAGACATTTGGCTGGCTTGTCAGCAACAGTTGGTTGATTAACTGCAACATGTATTTATTGGATGTCTATTTCAATAGAAGCTGGAAAACATCTATTAAATGATGAATAGTTTCTTTAATTTTGTTATCTAAAGTATTATTCTCCATACTTTTTTCACCAGACTAATCTGTAGTTTTTGTAAGTAATTTCTGAACATAAACTTGTGCTACCTGCTATGCTCAGGTCTTTCAGTAGTCCAGAAGTACAGTCCCGATGCTCGTCTTTTGGCTCATGAAAATACGATTCGTCGAATTAGAAAAGGTCAGAAAATTTTCAATTCTGTAGAATAGTGTCTATCTTGCCATAATTGAATCACTTTTTTGTTTAAAGAGCTACGCTTTTACTTTACGTTCTATGCTTTTCTAGAAGTTTTATCTAGCTTTTTAGAAGATTTATTTGTCAGTAGAAAACCTAAAGAACTTCTAGTACTTATTGTCATTATAATCATTATTTTTATTTTATATATGGTATTGGCCTAAGATGAATTTAAATGGAGAACTTGATCAATGAGGATTCATATAGCCAACCGTAACCTATTTGGGAGTGAGGCGTCATGTTATTGTTTAAATAGCTAGCAAGGGTTGCGGGTCTATACCCTTTTTTGGTCATGAAAAGAAGAGGGGGAACTATTATGATGAAGGATGACTTTTATGTTTGTCCTTTGTTGTTAAAAGGCAATTGCTTTTCATGCAAGAATGTATTTTCCGTGATAATGGGCTTACAAAGAGACATGCCATATGATGGACTTGTTTTGATGTTCGTAGCAATTTTTAATTTTTTTTTGGGTGGGTGGGTGGGTGGGTGGGGGGATCAATAACTTCTCATTTTGGCTAACAGGAATAGTTTCTAGTTGACTATGATGACTCTATTAGTGTACATTCAAGTGAGCATAAAATATACGCATGTTCGTGCACCATTTACAGCTTACTGATCTCACAGTATGTGTGGAAGTGAAATATTCTTTATCAAGTAAATGCATTTAATAACTTAAAGTAATTTCCATGTGATGCAGATGATTGGTCTCTCCCATATGTTTCAGTTTCTGGATCTGAGGAAATTTGCATTGGCAATCAGAAATTAAGAATTATCTTAGCACCGGTAATCTCCATTTATATCCTAGCTTCCTCTGATGAGAATCAGCACCCCCATGAAATTCTGTTTTTGACATTCATTTTTGTTGATTCTCTTCTGGTACTTGCTTCTTTATAGAAGAGATTCATGGTATTACGAGTAATCTATGCTCAGATTTTGACTTTTGCTTCAGAAATGAACCATTCGAGATTCTCACGGGGCAGAAAGCTTGTCATATCTATAAAGTCTTGTCAATAGAATTTTATGACATTGATAGGTTTTTAAGTAATGAGAGTGATTGTACTGCTACCTTTAAAACATATTTACTAGAGCATGGTGAATTTGTGTTTGAACTTAATACTAGAAGTTGTAAGAAGTGAATTAATTTAAAAGTTAGCTCCTAGTTTCTGAAATGGAATTTTCTTTGTAATGCAAGTAATCTCTTAGTTTTACTTCTGTGTTTACTCAACCCTCCATGCAAAACATTCCAATTTTCTTGTACAATTTTTTCTGGAATTTTAACACGTTCTTTTGGTGACAATATTGTGATTCAGGGACATACAGATGGACATATGGCACTGCTTCATGTTAGTACAAACTCGTTGATCGTAGGGGATCATTGTGTGGGGTAAGATATGTTTGATCAAGAAACTTCATATCCTTTAACAAATGAATATTTTCACTTGATAAATAATTTGTGGACATGATTACCAATTTTAAATGTAGCTTCCCCCGAAATAGTAATAATAAAAAAATGCAGTTTCCTAGTCCTTTTGAACAATTCTTTTAGCTTTTCTATGATGATACGGAAAACAATCTGTTCAACAAGTCTGTGATTGTGTTGGCCTACTTTGCATTTGTTTGTGATAGCTTCTCAATTTCTTCTCCTTTCTTAAAAATTGCTAATTTGATGTATCCCGTTGGTTTCAGCCAAGGAAGTGCTCTCTTAGATAGCGCGTCTGGTGGAAATATGCAGGTAAGTAACAATAGCATCTGTATGTTTCTTTTTGTCACTCTGTCATACTTGGAATGCTAATTAGAAGATGATGATTGGTTGTTGGTGTCTTAACTTTTGAAACTTGATTTAAATAAAAGGATCCGACTCTTCAACCAGAAAAAACCCACTATACTTTTCTTTTCCCATATAAAACTCGTTTACTTGTTTTCTTGTCAATGAGCAAGCCTTGCTCATGCATTCTATTAACTTTCTTGAATAGCCTTTTCCTTTCCTCTCTTTAGCCTTTGAAACTTAAATGTGAACTAGCACCTCTACTGAAAGCAGTGAGAATTAAGACTATACCACCACATTTTTCATATTCAAATTTTATATCCAATTCTAGATTGTTGATTCATATCAAAAAGATCAGCTATGAAAGTTTTTAACAGTTTTAGTCAATTGAATGGCAATCTAAATCTAGTATTGTGTCTGTTAAGGGTACTTAGATGGTGAAACTATTATGTTTTTAATATTGTCTTCCACAGGTTCTTTAATCTACATTCAGGTTCCCCTATTAAAATTTGAAAACATTCACTCAAAAATCACTAAAAACTCGCTAAAAAAGTGAATGAATTTCTTTCTGCTAGGGACAGGGGTTCAGCAAGAGTGTTTTAGCTGAATTCTGTAAATCTAACTTTGATAGTTTTATTTACCTTTTACAATAATGCTCATTTTATAATACCTTGTGACAATACTGAATAAGATATGGATTAAAGGAAGTAGGGGGTTGGGGAATCAACAAAAGTGCATTTGTGAATTCTGTAACTTAAATTGCTTTCTAGTTTTATTTTTATTTTCCGATAATGATTTTTGCTGTTTTCAATAACCCTAGTGAATATACAGAAAAAGATTAAGATTAGAGCAACTTGTAGGTGTTCATATCTGTTTCTATTATCATGTTCAACTATGACTTGGTCTTTCTCTTCTTTTTGAAATTCTCAGTATCGGAACTTCAATTTTTTTTTAAACAGGATTACTTTCAGACAACATACAAATTCATTGAGCTCTCTCCTCATGCGTTGATTCCCATGCACGGAAGAACTAATATGTGGCCAAAACACATGCTCTGTGGGTATCTCAAGTATGAACTTCAGACCTCTTATGACATATTCCATATATGCTTTCACTCAGAGTGCCTTTTCTGTCTATCAGCTATCGGCAAAATCATTGCCGAAGTATATGGTTAACAATTGTGCAGAAACCTTGCTTGTTTCCTTGTTGCTTTCTCCCACCATGTAAATCTTGTAGTCTTGTTTTATTGAACATTATGCTAATATATGTCATTAGCTGTGAAATTTGTTCAGTTAGTTTTATGTTCAATGTTTATTGATGTTGTCTAAGATAGATGTCAATCAAATTATCATTCTCAAAAAATTTATAAAACAGATACACTGATAGATTAAATTGACGCACATCTAATTTATTATTATCTGGGATTGTCAGAAACCGGAGAAACAGAGAATCAACCATCTTAATGGCAATAGAGAATGGTGCTAAAACATTGTTTGACATAGTTGCTTACACT</genome_strand>
        <mrna_strand>AGGATGTAAGTCATCTTCATATGAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGGAAATCATTGCTGCTTTGCCGAGAAAACTAGTCGTCTTTGTGACACATCATCATAATGATCATGTTGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTCAGTAGTCCAGAAGTACAGTCCCGATGCTCGTCTTTTGGCTCATGAAAATACGATTCGTCGAATTAGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTGGTCTCTCCCATATGTTTCAGTTTCTGGATCTGAGGAAATTTGCATTGGCAATCAGAAATTAAGAATTATCTTAGCACCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATACAGATGGACATATGGCACTGCTTCATGTTAGTACAAACTCGTTGATCGTAGGGGATCATTGTGTGGG..............................................................................................................................................................................................................................................................................................................CCAAGGAAGTGCTCTCTTAGATAGCGCGTCTGGTGGAAATATGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACTTTCAGACAACATACAAATTCATTGAGCTCTCTCCTCATGCGTTGATTCCCATGCACGGAAGAACTAATATGTGGCCAAAACACATGCTCTGTGGGTATCTCAA..........................................................................................................................................................................................................................................................................................................................................................................AAACCGGAGAAACAGAGAATCAACCATCTTAATGGCAATAGAGAATGGTGCTAAAACATTGTTTGACATAATTGCTTACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>15</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="16933" PGL_stop="9429"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16932" e_stop="16885"/>
            <exon e_start="16644" e_stop="16454"/>
            <exon e_start="14848" e_stop="14725"/>
            <exon e_start="12698" e_stop="12616"/>
            <exon e_start="12534" e_stop="12423"/>
            <exon e_start="12339" e_stop="12235"/>
            <exon e_start="12125" e_stop="12075"/>
            <exon e_start="10739" e_stop="10650"/>
            <exon e_start="10566" e_stop="10458"/>
            <exon e_start="10347" e_stop="10199"/>
            <exon e_start="10108" e_stop="10055"/>
            <exon e_start="9889" e_stop="9436"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.101" e_score="0.917"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.652" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.561" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.699" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.465" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="16932" e_stop="16885" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.101">
            <gDNA_intron_boundary i_start="16884" i_stop="16645" i_length="240"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16644" e_stop="16454" e_length="191"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="16453" i_stop="14849" i_length="1605"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14848" e_stop="14725" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.990">
            <gDNA_intron_boundary i_start="14724" i_stop="12699" i_length="2026"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12698" e_stop="12616" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.970">
            <gDNA_intron_boundary i_start="12615" i_stop="12535" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12534" e_stop="12423" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.652">
            <gDNA_intron_boundary i_start="12422" i_stop="12340" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12339" e_stop="12235" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="12234" i_stop="12126" i_length="109"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="12125" e_stop="12075" e_length="51"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12074" i_stop="10740" i_length="1335"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="10739" e_stop="10650" e_length="90"/>
          </exon>
          <intron i_serial="8" don_prob="0.561" acc_prob="0.991">
            <gDNA_intron_boundary i_start="10649" i_stop="10567" i_length="83"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="10566" e_stop="10458" e_length="109"/>
          </exon>
          <intron i_serial="9" don_prob="0.699" acc_prob="0.899">
            <gDNA_intron_boundary i_start="10457" i_stop="10348" i_length="110"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="10347" e_stop="10199" e_length="149"/>
          </exon>
          <intron i_serial="10" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="10198" i_stop="10109" i_length="90"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="10108" e_stop="10055" e_length="54"/>
          </exon>
          <intron i_serial="11" don_prob="0.963" acc_prob="0.465">
            <gDNA_intron_boundary i_start="10054" i_stop="9890" i_length="165"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="9889" e_stop="9436" e_length="454"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16932" stop="16885"/>
              <exon start="16644" stop="16454"/>
              <exon start="14848" stop="14725"/>
              <exon start="12698" stop="12621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16541" stop="16454"/>
              <exon start="14848" stop="14725"/>
              <exon start="12698" stop="12616"/>
              <exon start="12534" stop="12423"/>
              <exon start="12339" stop="12290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16508" stop="16454"/>
              <exon start="14848" stop="14725"/>
              <exon start="12698" stop="12616"/>
              <exon start="12534" stop="12423"/>
              <exon start="12339" stop="12235"/>
              <exon start="12125" stop="12075"/>
              <exon start="10739" stop="10686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12438" stop="12423"/>
              <exon start="12339" stop="12235"/>
              <exon start="12125" stop="12075"/>
              <exon start="10739" stop="10650"/>
              <exon start="10566" stop="10458"/>
              <exon start="10347" stop="10199"/>
              <exon start="10108" stop="10055"/>
              <exon start="9889" stop="9717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10547" stop="10458"/>
              <exon start="10347" stop="10199"/>
              <exon start="10108" stop="10055"/>
              <exon start="9889" stop="9436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716469" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAAGCTCCAGCTGAAAGAAAAAAAATTTGTTCATTCTTTTTTTTT : ATTTTGGGAAATCAAGGTTTTTTTTTTGTGTTCTATTGATTTTTGCGGTGGAAAAAGGGTGTAATGAGTGGTTCAAAATTGGAGGGGCCATCGGCTCCGGTGGTAAGACGAGACCCGTATGAAGTGTTGGCTGTGACGAGGGATTCGTCGGATCAGGAGATTAAGACTGCTTATAGAAAGCTTGCTCTCAA : GTATCATCCTGACAAGAATGCTAACAATCCTGAAGCTTCAGAACATTTCAAGGAGGTTGCATACTCATATAGCATTCTATCTGATCCAGAGAAAAGGAGGCAATATGATATGGCTGGCTTCGAG : GCTCTTGAAGCTGAAGGAATGGATATGGAAATTGATTTGTCCAACCTCGGAACTGTCAACACAATGTTTGCAGCATTGTTTAG : CAAGTTGGGTGTTCCTATCAAAACAACTATCTCTGCGAATGTTCTTGAAGAAGCTTTGAATGGAACTGTCACGGTCCGCCCTCTTCCAATTGGTACATCAGTCAGTGGAAAG : GTAGAAAAGCAAAATGCTCATTTTTTCGGTGTAACAATTAGTGACGAACAAGCAGAAGCAGGGATTGTAGTAAGAGCTACTTCAGCTGCCCAAAGCAAATTCAAG : CTACTATATTTTGAACATGATGTGAGTGGGGGTTACGGCCTGGCCTTGCAG : GAAGATAGTGAAAAAGCAGGCAAGGTAACCTCCGCAGGAATGTATTTCTTGCACTTTCAAGTGTACAGAATGGATTCAACTGTAAATGCG : TTAGCAATGGCCAAAGATCCTGAAGCTGCTTTCTTTAAGAGGCTGGAGGGTCTTCAACCTTGTGAGGTCTCACAACTAAATGCCGGCACTCACATATTTGCTGTTTATG : GAGATAATTTCTTTAAGCCTGCTAGTTATACTATTGAGGCTCTGTGTGCCAAGACATACGAGGATACAACTCATAATCTCCAGGATATCGAGGCTCAGATATTGAGGAAGAGAAATGAGCTTCGACAGTTTGAAACAGAATATAGAAAG : GCATTAGCGCGGTTCCAGGAAGTAACCAATAGATATAGCCAGGAGAAGCAGTCT : GTCGAAGAACTGCTCAAACAGAGAGACACCATACACTCTTCTTTCACCGTTACAAGGACAGTTGCTACGTTAAGTGGCAGTGGGAGTGGCCATTTCAGTAACGGAAGTAGCAGTAAACCTTCTGGTGATGACTCAAAACCCGATAGCCCAGGGGACGATAGCAGTTCAGACTCCAAGGACAAATACGCGAAGAGAAAATGGTTCAACCTTAACCTCAAAGGATCCGAGAAGAAGTAATCAGACTGAAGAATTCTCCAAATGTACTATTTGTTCTGTTTTCTTGGGCTTCCGAGACGTTCATTAATTTTTTCGAAATATCATTTTTTGGGCACGTTGATATGTCTATTTTCTATCGATTGATCGAAGATATAGAAGGGTTTTTTTGTTTGTTCCTGTATTGTACGTATTCTTCTTCTGCTGTGTATCATAATGTACTTAGTCAATGTATTTCATT</gDNA_template>
            <first_frame> Q  K  A  P  A  E  R  K  K  I  C  S  F  F  F  F  :  I  L  G  N  Q  G  F  F  F  V  F  Y  *  F  L  R  W  K  K  G  V  M  S  G  S  K  L  E  G  P  S  A  P  V  V  R  R  D  P  Y  E  V  L  A  V  T  R  D  S  S  D  Q  E  I  K  T  A  Y  R  K  L  A  L  K :   Y  H  P  D  K  N  A  N  N  P  E  A  S  E  H  F  K  E  V  A  Y  S  Y  S  I  L  S  D  P  E  K  R  R  Q  Y  D  M  A  G  F  E  :  A  L  E  A  E  G  M  D  M  E  I  D  L  S  N  L  G  T  V  N  T  M  F  A  A  L  F  S :   K  L  G  V  P  I  K  T  T  I  S  A  N  V  L  E  E  A  L  N  G  T  V  T  V  R  P  L  P  I  G  T  S  V  S  G  K  :  V  E  K  Q  N  A  H  F  F  G  V  T  I  S  D  E  Q  A  E  A  G  I  V  V  R  A  T  S  A  A  Q  S  K  F  K  :  L  L  Y  F  E  H  D  V  S  G  G  Y  G  L  A  L  Q  :  E  D  S  E  K  A  G  K  V  T  S  A  G  M  Y  F  L  H  F  Q  V  Y  R  M  D  S  T  V  N  A  :  L  A  M  A  K  D  P  E  A  A  F  F  K  R  L  E  G  L  Q  P  C  E  V  S  Q  L  N  A  G  T  H  I  F  A  V  Y   : G  D  N  F  F  K  P  A  S  Y  T  I  E  A  L  C  A  K  T  Y  E  D  T  T  H  N  L  Q  D  I  E  A  Q  I  L  R  K  R  N  E  L  R  Q  F  E  T  E  Y  R  K  :  A  L  A  R  F  Q  E  V  T  N  R  Y  S  Q  E  K  Q  S  :  V  E  E  L  L  K  Q  R  D  T  I  H  S  S  F  T  V  T  R  T  V  A  T  L  S  G  S  G  S  G  H  F  S  N  G  S  S  S  K  P  S  G  D  D  S  K  P  D  S  P  G  D  D  S  S  S  D  S  K  D  K  Y  A  K  R  K  W  F  N  L  N  L  K  G  S  E  K  K  *  S  D  *  R  I  L  Q  M  Y  Y  L  F  C  F  L  G  L  P  R  R  S  L  I  F  S  K  Y  H  F  L  G  T  L  I  C  L  F  S  I  D  *  S  K  I  *  K  G  F  F  V  C  S  C  I  V  R  I  L  L  L  L  C  I  I  M  Y  L  V  N  V  F  H  </first_frame>
            <second_frame>  K  K  L  Q  L  K  E  K  K  F  V  H  S  F  F  L :   F  W  E  I  K  V  F  F  L  C  S  I  D  F  C  G  G  K  R  V  *  *  V  V  Q  N  W  R  G  H  R  L  R  W  *  D  E  T  R  M  K  C  W  L  *  R  G  I  R  R  I  R  R  L  R  L  L  I  E  S  L  L  S   : S  I  I  L  T  R  M  L  T  I  L  K  L  Q  N  I  S  R  R  L  H  T  H  I  A  F  Y  L  I  Q  R  K  G  G  N  M  I  W  L  A  S  R :   L  L  K  L  K  E  W  I  W  K  L  I  C  P  T  S  E  L  S  T  Q  C  L  Q  H  C  L   : A  S  W  V  F  L  S  K  Q  L  S  L  R  M  F  L  K  K  L  *  M  E  L  S  R  S  A  L  F  Q  L  V  H  Q  S  V  E  R :   *  K  S  K  M  L  I  F  S  V  *  Q  L  V  T  N  K  Q  K  Q  G  L  *  *  E  L  L  Q  L  P  K  A  N  S  S :   Y  Y  I  L  N  M  M  *  V  G  V  T  A  W  P  C  R :   K  I  V  K  K  Q  A  R  *  P  P  Q  E  C  I  S  C  T  F  K  C  T  E  W  I  Q  L  *  M  R :   *  Q  W  P  K  I  L  K  L  L  S  L  R  G  W  R  V  F  N  L  V  R  S  H  N  *  M  P  A  L  T  Y  L  L  F  M  :  E  I  I  S  L  S  L  L  V  I  L  L  R  L  C  V  P  R  H  T  R  I  Q  L  I  I  S  R  I  S  R  L  R  Y  *  G  R  E  M  S  F  D  S  L  K  Q  N  I  E  R :   H  *  R  G  S  R  K  *  P  I  D  I  A  R  R  S  S  L :   S  K  N  C  S  N  R  E  T  P  Y  T  L  L  S  P  L  Q  G  Q  L  L  R  *  V  A  V  G  V  A  I  S  V  T  E  V  A  V  N  L  L  V  M  T  Q  N  P  I  A  Q  G  T  I  A  V  Q  T  P  R  T  N  T  R  R  E  N  G  S  T  L  T  S  K  D  P  R  R  S  N  Q  T  E  E  F  S  K  C  T  I  C  S  V  F  L  G  F  R  D  V  H  *  F  F  R  N  I  I  F  W  A  R  *  Y  V  Y  F  L  S  I  D  R  R  Y  R  R  V  F  L  F  V  P  V  L  Y  V  F  F  F  C  C  V  S  *  C  T  *  S  M  Y  F  I </second_frame>
            <third_frame>   K  S  S  S  *  K  K  K  N  L  F  I  L  F  F   : Y  F  G  K  S  R  F  F  F  C  V  L  L  I  F  A  V  E  K  G  C  N  E  W  F  K  I  G  G  A  I  G  S  G  G  K  T  R  P  V  *  S  V  G  C  D  E  G  F  V  G  S  G  D  *  D  C  L  *  K  A  C  S  Q  :  V  S  S  *  Q  E  C  *  Q  S  *  S  F  R  T  F  Q  G  G  C  I  L  I  *  H  S  I  *  S  R  E  K  E  A  I  *  Y  G  W  L  R   : G  S  *  S  *  R  N  G  Y  G  N  *  F  V  Q  P  R  N  C  Q  H  N  V  C  S  I  V  *  :  Q  V  G  C  S  Y  Q  N  N  Y  L  C  E  C  S  *  R  S  F  E  W  N  C  H  G  P  P  S  S  N  W  Y  I  S  Q  W  K   : G  R  K  A  K  C  S  F  F  R  C  N  N  *  *  R  T  S  R  S  R  D  C  S  K  S  Y  F  S  C  P  K  Q  I  Q   : A  T  I  F  *  T  *  C  E  W  G  L  R  P  G  L  A   : G  R  *  *  K  S  R  Q  G  N  L  R  R  N  V  F  L  A  L  S  S  V  Q  N  G  F  N  C  K  C   : V  S  N  G  Q  R  S  *  S  C  F  L  *  E  A  G  G  S  S  T  L  *  G  L  T  T  K  C  R  H  S  H  I  C  C  L  W :   R  *  F  L  *  A  C  *  L  Y  Y  *  G  S  V  C  Q  D  I  R  G  Y  N  S  *  S  P  G  Y  R  G  S  D  I  E  E  E  K  *  A  S  T  V  *  N  R  I  *  K   : G  I  S  A  V  P  G  S  N  Q  *  I  *  P  G  E  A  V   : C  R  R  T  A  Q  T  E  R  H  H  T  L  F  F  H  R  Y  K  D  S  C  Y  V  K  W  Q  W  E  W  P  F  Q  *  R  K  *  Q  *  T  F  W  *  *  L  K  T  R  *  P  R  G  R  *  Q  F  R  L  Q  G  Q  I  R  E  E  K  M  V  Q  P  *  P  Q  R  I  R  E  E  V  I  R  L  K  N  S  P  N  V  L  F  V  L  F  S  W  A  S  E  T  F  I  N  F  F  E  I  S  F  F  G  H  V  D  M  S  I  F  Y  R  L  I  E  D  I  E  G  F  F  C  L  F  L  Y  C  T  Y  S  S  S  A  V  Y  H  N  V  L  S  Q  C  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0207N23.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16605" stop="16454"/>
                    <exon start="14848" stop="14725"/>
                    <exon start="12698" stop="12616"/>
                    <exon start="12534" stop="12423"/>
                    <exon start="12339" stop="12235"/>
                    <exon start="12125" stop="12075"/>
                    <exon start="10739" stop="10650"/>
                    <exon start="10566" stop="10458"/>
                    <exon start="10347" stop="10199"/>
                    <exon start="10108" stop="10055"/>
                    <exon start="9889" stop="9653"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1263</number_coding_nucleotides>
                  <number_encoded_amino_acids>421</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLRWKKGVMSGSKLEGPSAPVVRRDPYEVLAVTRDSSDQEIKTAYRKLALKYHPDKNANNPEASEHFKEVAYSYSILSDPEKRRQYDMAGFEALEAEGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQNAHFFGVTISDEQAEAGIVVRATSAAQSKFKLLYFEHDVSGGYGLALQEDSEKAGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSQLNAGTHIFAVYGDNFFKPASYTIEALCAKTYEDTTHNLQDIEAQILRKRNELRQFETEYRKALARFQEVTNRYSQEKQSVEELLKQRDTIHSSFTVTRTVATLSGSGSGHFSNGSSSKPSGDDSKPDSPGDDSSSDSKDKYAKRKWFNLNLKGSEKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0207N23.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9677" stop="9438"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQRIREEVIRLKNSPNVLFVLFSWASETFINFFEISFFGHVDMSIFYRLIEDIEGFFCLFLYCTYSSSAVYHNVLSQCIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16932" e_stop="16885"/>
            <exon e_start="16644" e_stop="16454"/>
            <exon e_start="14848" e_stop="14725"/>
            <exon e_start="12698" e_stop="12616"/>
            <exon e_start="12534" e_stop="12423"/>
            <exon e_start="12339" e_stop="12235"/>
            <exon e_start="12125" e_stop="12075"/>
            <exon e_start="10739" e_stop="10458"/>
            <exon e_start="10347" e_stop="10199"/>
            <exon e_start="10108" e_stop="10055"/>
            <exon e_start="9889" e_stop="9436"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.101" e_score="0.917"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.652" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.699" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.465" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="16932" e_stop="16885" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.101">
            <gDNA_intron_boundary i_start="16884" i_stop="16645" i_length="240"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16644" e_stop="16454" e_length="191"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="16453" i_stop="14849" i_length="1605"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14848" e_stop="14725" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.990">
            <gDNA_intron_boundary i_start="14724" i_stop="12699" i_length="2026"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12698" e_stop="12616" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.970">
            <gDNA_intron_boundary i_start="12615" i_stop="12535" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12534" e_stop="12423" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.652">
            <gDNA_intron_boundary i_start="12422" i_stop="12340" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12339" e_stop="12235" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="12234" i_stop="12126" i_length="109"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="12125" e_stop="12075" e_length="51"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12074" i_stop="10740" i_length="1335"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="10739" e_stop="10458" e_length="282"/>
          </exon>
          <intron i_serial="8" don_prob="0.699" acc_prob="0.899">
            <gDNA_intron_boundary i_start="10457" i_stop="10348" i_length="110"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="10347" e_stop="10199" e_length="149"/>
          </exon>
          <intron i_serial="9" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="10198" i_stop="10109" i_length="90"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="10108" e_stop="10055" e_length="54"/>
          </exon>
          <intron i_serial="10" don_prob="0.963" acc_prob="0.465">
            <gDNA_intron_boundary i_start="10054" i_stop="9890" i_length="165"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="9889" e_stop="9436" e_length="454"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16932" stop="16885"/>
              <exon start="16644" stop="16454"/>
              <exon start="14848" stop="14725"/>
              <exon start="12698" stop="12621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16541" stop="16454"/>
              <exon start="14848" stop="14725"/>
              <exon start="12698" stop="12616"/>
              <exon start="12534" stop="12423"/>
              <exon start="12339" stop="12290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16508" stop="16454"/>
              <exon start="14848" stop="14725"/>
              <exon start="12698" stop="12616"/>
              <exon start="12534" stop="12423"/>
              <exon start="12339" stop="12235"/>
              <exon start="12125" stop="12075"/>
              <exon start="10739" stop="10686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12663" stop="12616"/>
              <exon start="12534" stop="12423"/>
              <exon start="12339" stop="12235"/>
              <exon start="12125" stop="12075"/>
              <exon start="10739" stop="10458"/>
              <exon start="10347" stop="10268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10547" stop="10458"/>
              <exon start="10347" stop="10199"/>
              <exon start="10108" stop="10055"/>
              <exon start="9889" stop="9436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716469" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAAGCTCCAGCTGAAAGAAAAAAAATTTGTTCATTCTTTTTTTTT : ATTTTGGGAAATCAAGGTTTTTTTTTTGTGTTCTATTGATTTTTGCGGTGGAAAAAGGGTGTAATGAGTGGTTCAAAATTGGAGGGGCCATCGGCTCCGGTGGTAAGACGAGACCCGTATGAAGTGTTGGCTGTGACGAGGGATTCGTCGGATCAGGAGATTAAGACTGCTTATAGAAAGCTTGCTCTCAA : GTATCATCCTGACAAGAATGCTAACAATCCTGAAGCTTCAGAACATTTCAAGGAGGTTGCATACTCATATAGCATTCTATCTGATCCAGAGAAAAGGAGGCAATATGATATGGCTGGCTTCGAG : GCTCTTGAAGCTGAAGGAATGGATATGGAAATTGATTTGTCCAACCTCGGAACTGTCAACACAATGTTTGCAGCATTGTTTAG : CAAGTTGGGTGTTCCTATCAAAACAACTATCTCTGCGAATGTTCTTGAAGAAGCTTTGAATGGAACTGTCACGGTCCGCCCTCTTCCAATTGGTACATCAGTCAGTGGAAAG : GTAGAAAAGCAAAATGCTCATTTTTTCGGTGTAACAATTAGTGACGAACAAGCAGAAGCAGGGATTGTAGTAAGAGCTACTTCAGCTGCCCAAAGCAAATTCAAG : CTACTATATTTTGAACATGATGTGAGTGGGGGTTACGGCCTGGCCTTGCAG : GAAGATAGTGAAAAAGCAGGCAAGGTAACCTCCGCAGGAATGTATTTCTTGCACTTTCAAGTGTACAGAATGGATTCAACTGTAAATGCGGTATGTGGATTCATCTTAGTGGTTAAAATTCAATAGTATTGCATGCAGTGTTATCAAAAGTGATAATACTCGTGATGATGTAGTTAGCAATGGCCAAAGATCCTGAAGCTGCTTTCTTTAAGAGGCTGGAGGGTCTTCAACCTTGTGAGGTCTCACAACTAAATGCCGGCACTCACATATTTGCTGTTTATG : GAGATAATTTCTTTAAGCCTGCTAGTTATACTATTGAGGCTCTGTGTGCCAAGACATACGAGGATACAACTCATAATCTCCAGGATATCGAGGCTCAGATATTGAGGAAGAGAAATGAGCTTCGACAGTTTGAAACAGAATATAGAAAG : GCATTAGCGCGGTTCCAGGAAGTAACCAATAGATATAGCCAGGAGAAGCAGTCT : GTCGAAGAACTGCTCAAACAGAGAGACACCATACACTCTTCTTTCACCGTTACAAGGACAGTTGCTACGTTAAGTGGCAGTGGGAGTGGCCATTTCAGTAACGGAAGTAGCAGTAAACCTTCTGGTGATGACTCAAAACCCGATAGCCCAGGGGACGATAGCAGTTCAGACTCCAAGGACAAATACGCGAAGAGAAAATGGTTCAACCTTAACCTCAAAGGATCCGAGAAGAAGTAATCAGACTGAAGAATTCTCCAAATGTACTATTTGTTCTGTTTTCTTGGGCTTCCGAGACGTTCATTAATTTTTTCGAAATATCATTTTTTGGGCACGTTGATATGTCTATTTTCTATCGATTGATCGAAGATATAGAAGGGTTTTTTTGTTTGTTCCTGTATTGTACGTATTCTTCTTCTGCTGTGTATCATAATGTACTTAGTCAATGTATTTCATT</gDNA_template>
            <first_frame> Q  K  A  P  A  E  R  K  K  I  C  S  F  F  F  F  :  I  L  G  N  Q  G  F  F  F  V  F  Y  *  F  L  R  W  K  K  G  V  M  S  G  S  K  L  E  G  P  S  A  P  V  V  R  R  D  P  Y  E  V  L  A  V  T  R  D  S  S  D  Q  E  I  K  T  A  Y  R  K  L  A  L  K :   Y  H  P  D  K  N  A  N  N  P  E  A  S  E  H  F  K  E  V  A  Y  S  Y  S  I  L  S  D  P  E  K  R  R  Q  Y  D  M  A  G  F  E  :  A  L  E  A  E  G  M  D  M  E  I  D  L  S  N  L  G  T  V  N  T  M  F  A  A  L  F  S :   K  L  G  V  P  I  K  T  T  I  S  A  N  V  L  E  E  A  L  N  G  T  V  T  V  R  P  L  P  I  G  T  S  V  S  G  K  :  V  E  K  Q  N  A  H  F  F  G  V  T  I  S  D  E  Q  A  E  A  G  I  V  V  R  A  T  S  A  A  Q  S  K  F  K  :  L  L  Y  F  E  H  D  V  S  G  G  Y  G  L  A  L  Q  :  E  D  S  E  K  A  G  K  V  T  S  A  G  M  Y  F  L  H  F  Q  V  Y  R  M  D  S  T  V  N  A  V  C  G  F  I  L  V  V  K  I  Q  *  Y  C  M  Q  C  Y  Q  K  *  *  Y  S  *  *  C  S  *  Q  W  P  K  I  L  K  L  L  S  L  R  G  W  R  V  F  N  L  V  R  S  H  N  *  M  P  A  L  T  Y  L  L  F  M  :  E  I  I  S  L  S  L  L  V  I  L  L  R  L  C  V  P  R  H  T  R  I  Q  L  I  I  S  R  I  S  R  L  R  Y  *  G  R  E  M  S  F  D  S  L  K  Q  N  I  E  R :   H  *  R  G  S  R  K  *  P  I  D  I  A  R  R  S  S  L :   S  K  N  C  S  N  R  E  T  P  Y  T  L  L  S  P  L  Q  G  Q  L  L  R  *  V  A  V  G  V  A  I  S  V  T  E  V  A  V  N  L  L  V  M  T  Q  N  P  I  A  Q  G  T  I  A  V  Q  T  P  R  T  N  T  R  R  E  N  G  S  T  L  T  S  K  D  P  R  R  S  N  Q  T  E  E  F  S  K  C  T  I  C  S  V  F  L  G  F  R  D  V  H  *  F  F  R  N  I  I  F  W  A  R  *  Y  V  Y  F  L  S  I  D  R  R  Y  R  R  V  F  L  F  V  P  V  L  Y  V  F  F  F  C  C  V  S  *  C  T  *  S  M  Y  F  I </first_frame>
            <second_frame>  K  K  L  Q  L  K  E  K  K  F  V  H  S  F  F  L :   F  W  E  I  K  V  F  F  L  C  S  I  D  F  C  G  G  K  R  V  *  *  V  V  Q  N  W  R  G  H  R  L  R  W  *  D  E  T  R  M  K  C  W  L  *  R  G  I  R  R  I  R  R  L  R  L  L  I  E  S  L  L  S   : S  I  I  L  T  R  M  L  T  I  L  K  L  Q  N  I  S  R  R  L  H  T  H  I  A  F  Y  L  I  Q  R  K  G  G  N  M  I  W  L  A  S  R :   L  L  K  L  K  E  W  I  W  K  L  I  C  P  T  S  E  L  S  T  Q  C  L  Q  H  C  L   : A  S  W  V  F  L  S  K  Q  L  S  L  R  M  F  L  K  K  L  *  M  E  L  S  R  S  A  L  F  Q  L  V  H  Q  S  V  E  R :   *  K  S  K  M  L  I  F  S  V  *  Q  L  V  T  N  K  Q  K  Q  G  L  *  *  E  L  L  Q  L  P  K  A  N  S  S :   Y  Y  I  L  N  M  M  *  V  G  V  T  A  W  P  C  R :   K  I  V  K  K  Q  A  R  *  P  P  Q  E  C  I  S  C  T  F  K  C  T  E  W  I  Q  L  *  M  R  Y  V  D  S  S  *  W  L  K  F  N  S  I  A  C  S  V  I  K  S  D  N  T  R  D  D  V  V  S  N  G  Q  R  S  *  S  C  F  L  *  E  A  G  G  S  S  T  L  *  G  L  T  T  K  C  R  H  S  H  I  C  C  L  W :   R  *  F  L  *  A  C  *  L  Y  Y  *  G  S  V  C  Q  D  I  R  G  Y  N  S  *  S  P  G  Y  R  G  S  D  I  E  E  E  K  *  A  S  T  V  *  N  R  I  *  K   : G  I  S  A  V  P  G  S  N  Q  *  I  *  P  G  E  A  V   : C  R  R  T  A  Q  T  E  R  H  H  T  L  F  F  H  R  Y  K  D  S  C  Y  V  K  W  Q  W  E  W  P  F  Q  *  R  K  *  Q  *  T  F  W  *  *  L  K  T  R  *  P  R  G  R  *  Q  F  R  L  Q  G  Q  I  R  E  E  K  M  V  Q  P  *  P  Q  R  I  R  E  E  V  I  R  L  K  N  S  P  N  V  L  F  V  L  F  S  W  A  S  E  T  F  I  N  F  F  E  I  S  F  F  G  H  V  D  M  S  I  F  Y  R  L  I  E  D  I  E  G  F  F  C  L  F  L  Y  C  T  Y  S  S  S  A  V  Y  H  N  V  L  S  Q  C  I  S   </second_frame>
            <third_frame>   K  S  S  S  *  K  K  K  N  L  F  I  L  F  F   : Y  F  G  K  S  R  F  F  F  C  V  L  L  I  F  A  V  E  K  G  C  N  E  W  F  K  I  G  G  A  I  G  S  G  G  K  T  R  P  V  *  S  V  G  C  D  E  G  F  V  G  S  G  D  *  D  C  L  *  K  A  C  S  Q  :  V  S  S  *  Q  E  C  *  Q  S  *  S  F  R  T  F  Q  G  G  C  I  L  I  *  H  S  I  *  S  R  E  K  E  A  I  *  Y  G  W  L  R   : G  S  *  S  *  R  N  G  Y  G  N  *  F  V  Q  P  R  N  C  Q  H  N  V  C  S  I  V  *  :  Q  V  G  C  S  Y  Q  N  N  Y  L  C  E  C  S  *  R  S  F  E  W  N  C  H  G  P  P  S  S  N  W  Y  I  S  Q  W  K   : G  R  K  A  K  C  S  F  F  R  C  N  N  *  *  R  T  S  R  S  R  D  C  S  K  S  Y  F  S  C  P  K  Q  I  Q   : A  T  I  F  *  T  *  C  E  W  G  L  R  P  G  L  A   : G  R  *  *  K  S  R  Q  G  N  L  R  R  N  V  F  L  A  L  S  S  V  Q  N  G  F  N  C  K  C  G  M  W  I  H  L  S  G  *  N  S  I  V  L  H  A  V  L  S  K  V  I  I  L  V  M  M  *  L  A  M  A  K  D  P  E  A  A  F  F  K  R  L  E  G  L  Q  P  C  E  V  S  Q  L  N  A  G  T  H  I  F  A  V  Y   : G  D  N  F  F  K  P  A  S  Y  T  I  E  A  L  C  A  K  T  Y  E  D  T  T  H  N  L  Q  D  I  E  A  Q  I  L  R  K  R  N  E  L  R  Q  F  E  T  E  Y  R  K  :  A  L  A  R  F  Q  E  V  T  N  R  Y  S  Q  E  K  Q  S  :  V  E  E  L  L  K  Q  R  D  T  I  H  S  S  F  T  V  T  R  T  V  A  T  L  S  G  S  G  S  G  H  F  S  N  G  S  S  S  K  P  S  G  D  D  S  K  P  D  S  P  G  D  D  S  S  S  D  S  K  D  K  Y  A  K  R  K  W  F  N  L  N  L  K  G  S  E  K  K  *  S  D  *  R  I  L  Q  M  Y  Y  L  F  C  F  L  G  L  P  R  R  S  L  I  F  S  K  Y  H  F  L  G  T  L  I  C  L  F  S  I  D  *  S  K  I  *  K  G  F  F  V  C  S  C  I  V  R  I  L  L  L  L  C  I  I  M  Y  L  V  N  V  F  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0207N23.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16605" stop="16454"/>
                    <exon start="14848" stop="14725"/>
                    <exon start="12698" stop="12616"/>
                    <exon start="12534" stop="12423"/>
                    <exon start="12339" stop="12235"/>
                    <exon start="12125" stop="12075"/>
                    <exon start="10739" stop="10614"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLRWKKGVMSGSKLEGPSAPVVRRDPYEVLAVTRDSSDQEIKTAYRKLALKYHPDKNANNPEASEHFKEVAYSYSILSDPEKRRQYDMAGFEALEAEGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQNAHFFGVTISDEQAEAGIVVRATSAAQSKFKLLYFEHDVSGGYGLALQEDSEKAGKVTSAGMYFLHFQVYRMDSTVNAVCGFILVVKIQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0207N23.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10566" stop="10458"/>
                    <exon start="10347" stop="10199"/>
                    <exon start="10108" stop="10055"/>
                    <exon start="9889" stop="9653"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAMAKDPEAAFFKRLEGLQPCEVSQLNAGTHIFAVYGDNFFKPASYTIEALCAKTYEDTTHNLQDIEAQILRKRNELRQFETEYRKALARFQEVTNRYSQEKQSVEELLKQRDTIHSSFTVTRTVATLSGSGSGHFSNGSSSKPSGDDSKPDSPGDDSSSDSKDKYAKRKWFNLNLKGSEKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0207N23.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9677" stop="9438"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQRIREEVIRLKNSPNVLFVLFSWASETFINFFEISFFGHVDMSIFYRLIEDIEGFFCLFLYCTYSSSAVYHNVLSQCIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="16933" e_stop="16885"/>
            <exon e_start="16644" e_stop="16454"/>
            <exon e_start="14848" e_stop="14725"/>
            <exon e_start="12698" e_stop="12616"/>
            <exon e_start="12534" e_stop="12423"/>
            <exon e_start="12339" e_stop="12235"/>
            <exon e_start="12125" e_stop="12075"/>
            <exon e_start="10739" e_stop="10650"/>
            <exon e_start="10566" e_stop="10199"/>
            <exon e_start="10108" e_stop="10055"/>
            <exon e_start="9889" e_stop="9429"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.101" e_score="0.917"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.652" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.561" acc_prob="0.991" e_score="0.989"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="0.962"/>
          <exon-intron don_prob="0.963" acc_prob="0.465" e_score="0.981"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="16933" e_stop="16885" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.101">
            <gDNA_intron_boundary i_start="16884" i_stop="16645" i_length="240"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16644" e_stop="16454" e_length="191"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="16453" i_stop="14849" i_length="1605"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14848" e_stop="14725" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.990">
            <gDNA_intron_boundary i_start="14724" i_stop="12699" i_length="2026"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12698" e_stop="12616" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.970">
            <gDNA_intron_boundary i_start="12615" i_stop="12535" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12534" e_stop="12423" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.652">
            <gDNA_intron_boundary i_start="12422" i_stop="12340" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12339" e_stop="12235" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="12234" i_stop="12126" i_length="109"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="12125" e_stop="12075" e_length="51"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12074" i_stop="10740" i_length="1335"/>
          </intron>
          <exon e_serial="8" e_score="0.989">
            <gDNA_exon_boundary e_start="10739" e_stop="10650" e_length="90"/>
          </exon>
          <intron i_serial="8" don_prob="0.561" acc_prob="0.991">
            <gDNA_intron_boundary i_start="10649" i_stop="10567" i_length="83"/>
          </intron>
          <exon e_serial="9" e_score="0.962">
            <gDNA_exon_boundary e_start="10566" e_stop="10199" e_length="368"/>
          </exon>
          <intron i_serial="9" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="10198" i_stop="10109" i_length="90"/>
          </intron>
          <exon e_serial="10" e_score="0.981">
            <gDNA_exon_boundary e_start="10108" e_stop="10055" e_length="54"/>
          </exon>
          <intron i_serial="10" don_prob="0.963" acc_prob="0.465">
            <gDNA_intron_boundary i_start="10054" i_stop="9890" i_length="165"/>
          </intron>
          <exon e_serial="11" e_score="0.980">
            <gDNA_exon_boundary e_start="9889" e_stop="9429" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16933" stop="16885"/>
              <exon start="16644" stop="16454"/>
              <exon start="14848" stop="14725"/>
              <exon start="12698" stop="12616"/>
              <exon start="12534" stop="12423"/>
              <exon start="12339" stop="12235"/>
              <exon start="12125" stop="12075"/>
              <exon start="10739" stop="10650"/>
              <exon start="10566" stop="10199"/>
              <exon start="10108" stop="10055"/>
              <exon start="9889" stop="9429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16932" stop="16885"/>
              <exon start="16644" stop="16454"/>
              <exon start="14848" stop="14725"/>
              <exon start="12698" stop="12621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16541" stop="16454"/>
              <exon start="14848" stop="14725"/>
              <exon start="12698" stop="12616"/>
              <exon start="12534" stop="12423"/>
              <exon start="12339" stop="12290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16508" stop="16454"/>
              <exon start="14848" stop="14725"/>
              <exon start="12698" stop="12616"/>
              <exon start="12534" stop="12423"/>
              <exon start="12339" stop="12235"/>
              <exon start="12125" stop="12075"/>
              <exon start="10739" stop="10686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371329" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAAAAGCTCCAGCTGAAAGAAAAAAAATTTGTTCATTCTTTTTTTTT : ATTTTGGGAAATCAAGGTTTTTTTTTTGTGTTCTATTGATTTTTGCGGTGGAAAAAGGGTGTAATGAGTGGTTCAAAATTGGAGGGGCCATCGGCTCCGGTGGTAAGACGAGACCCGTATGAAGTGTTGGCTGTGACGAGGGATTCGTCGGATCAGGAGATTAAGACTGCTTATAGAAAGCTTGCTCTCAA : GTATCATCCTGACAAGAATGCTAACAATCCTGAAGCTTCAGAACATTTCAAGGAGGTTGCATACTCATATAGCATTCTATCTGATCCAGAGAAAAGGAGGCAATATGATATGGCTGGCTTCGAG : GCTCTTGAAGCTGAAGGAATGGATATGGAAATTGATTTGTCCAACCTCGGAACTGTCAACACAATGTTTGCAGCATTGTTTAG : CAAGTTGGGTGTTCCTATCAAAACAACTATCTCTGCGAATGTTCTTGAAGAAGCTTTGAATGGAACTGTCACGGTCCGCCCTCTTCCAATTGGTACATCAGTCAGTGGAAAG : GTAGAAAAGCAAAATGCTCATTTTTTCGGTGTAACAATTAGTGACGAACAAGCAGAAGCAGGGATTGTAGTAAGAGCTACTTCAGCTGCCCAAAGCAAATTCAAG : CTACTATATTTTGAACATGATGTGAGTGGGGGTTACGGCCTGGCCTTGCAG : GAAGATAGTGAAAAAGCAGGCAAGGTAACCTCCGCAGGAATGTATTTCTTGCACTTTCAAGTGTACAGAATGGATTCAACTGTAAATGCG : TTAGCAATGGCCAAAGATCCTGAAGCTGCTTTCTTTAAGAGGCTGGAGGGTCTTCAACCTTGTGAGGTCTCACAACTAAATGCCGGCACTCACATATTTGCTGTTTATGGTCTGAGCTGCTTTTATTTTGTTGAATATATTGTTTTGTTTTTGAAAAATACTATCTGATTGCTACTGATTACGCAAACACTAAAGAAATGTTTGATTTAATTTCTGCAGGAGATAATTTCTTTAAGCCTGCTAGTTATACTATTGAGGCTCTGTGTGCCAAGACATACGAGGATACAACTCATAATCTCCAGGATATCGAGGCTCAGATATTGAGGAAGAGAAATGAGCTTCGACAGTTTGAAACAGAATATAGAAAG : GCATTAGCGCGGTTCCAGGAAGTAACCAATAGATATAGCCAGGAGAAGCAGTCT : GTCGAAGAACTGCTCAAACAGAGAGACACCATACACTCTTCTTTCACCGTTACAAGGACAGTTGCTACGTTAAGTGGCAGTGGGAGTGGCCATTTCAGTAACGGAAGTAGCAGTAAACCTTCTGGTGATGACTCAAAACCCGATAGCCCAGGGGACGATAGCAGTTCAGACTCCAAGGACAAATACGCGAAGAGAAAATGGTTCAACCTTAACCTCAAAGGATCCGAGAAGAAGTAATCAGACTGAAGAATTCTCCAAATGTACTATTTGTTCTGTTTTCTTGGGCTTCCGAGACGTTCATTAATTTTTTCGAAATATCATTTTTTGGGCACGTTGATATGTCTATTTTCTATCGATTGATCGAAGATATAGAAGGGTTTTTTTGTTTGTTCCTGTATTGTACGTATTCTTCTTCTGCTGTGTATCATAATGTACTTAGTCAATGTATTTCATTATTTTCA</gDNA_template>
            <first_frame> S  K  S  S  S  *  K  K  K  N  L  F  I  L  F  F   : Y  F  G  K  S  R  F  F  F  C  V  L  L  I  F  A  V  E  K  G  C  N  E  W  F  K  I  G  G  A  I  G  S  G  G  K  T  R  P  V  *  S  V  G  C  D  E  G  F  V  G  S  G  D  *  D  C  L  *  K  A  C  S  Q  :  V  S  S  *  Q  E  C  *  Q  S  *  S  F  R  T  F  Q  G  G  C  I  L  I  *  H  S  I  *  S  R  E  K  E  A  I  *  Y  G  W  L  R   : G  S  *  S  *  R  N  G  Y  G  N  *  F  V  Q  P  R  N  C  Q  H  N  V  C  S  I  V  *  :  Q  V  G  C  S  Y  Q  N  N  Y  L  C  E  C  S  *  R  S  F  E  W  N  C  H  G  P  P  S  S  N  W  Y  I  S  Q  W  K   : G  R  K  A  K  C  S  F  F  R  C  N  N  *  *  R  T  S  R  S  R  D  C  S  K  S  Y  F  S  C  P  K  Q  I  Q   : A  T  I  F  *  T  *  C  E  W  G  L  R  P  G  L  A   : G  R  *  *  K  S  R  Q  G  N  L  R  R  N  V  F  L  A  L  S  S  V  Q  N  G  F  N  C  K  C   : V  S  N  G  Q  R  S  *  S  C  F  L  *  E  A  G  G  S  S  T  L  *  G  L  T  T  K  C  R  H  S  H  I  C  C  L  W  S  E  L  L  L  F  C  *  I  Y  C  F  V  F  E  K  Y  Y  L  I  A  T  D  Y  A  N  T  K  E  M  F  D  L  I  S  A  G  D  N  F  F  K  P  A  S  Y  T  I  E  A  L  C  A  K  T  Y  E  D  T  T  H  N  L  Q  D  I  E  A  Q  I  L  R  K  R  N  E  L  R  Q  F  E  T  E  Y  R  K  :  A  L  A  R  F  Q  E  V  T  N  R  Y  S  Q  E  K  Q  S  :  V  E  E  L  L  K  Q  R  D  T  I  H  S  S  F  T  V  T  R  T  V  A  T  L  S  G  S  G  S  G  H  F  S  N  G  S  S  S  K  P  S  G  D  D  S  K  P  D  S  P  G  D  D  S  S  S  D  S  K  D  K  Y  A  K  R  K  W  F  N  L  N  L  K  G  S  E  K  K  *  S  D  *  R  I  L  Q  M  Y  Y  L  F  C  F  L  G  L  P  R  R  S  L  I  F  S  K  Y  H  F  L  G  T  L  I  C  L  F  S  I  D  *  S  K  I  *  K  G  F  F  V  C  S  C  I  V  R  I  L  L  L  L  C  I  I  M  Y  L  V  N  V  F  H  Y  F   </first_frame>
            <second_frame>  Q  K  A  P  A  E  R  K  K  I  C  S  F  F  F  F  :  I  L  G  N  Q  G  F  F  F  V  F  Y  *  F  L  R  W  K  K  G  V  M  S  G  S  K  L  E  G  P  S  A  P  V  V  R  R  D  P  Y  E  V  L  A  V  T  R  D  S  S  D  Q  E  I  K  T  A  Y  R  K  L  A  L  K :   Y  H  P  D  K  N  A  N  N  P  E  A  S  E  H  F  K  E  V  A  Y  S  Y  S  I  L  S  D  P  E  K  R  R  Q  Y  D  M  A  G  F  E  :  A  L  E  A  E  G  M  D  M  E  I  D  L  S  N  L  G  T  V  N  T  M  F  A  A  L  F  S :   K  L  G  V  P  I  K  T  T  I  S  A  N  V  L  E  E  A  L  N  G  T  V  T  V  R  P  L  P  I  G  T  S  V  S  G  K  :  V  E  K  Q  N  A  H  F  F  G  V  T  I  S  D  E  Q  A  E  A  G  I  V  V  R  A  T  S  A  A  Q  S  K  F  K  :  L  L  Y  F  E  H  D  V  S  G  G  Y  G  L  A  L  Q  :  E  D  S  E  K  A  G  K  V  T  S  A  G  M  Y  F  L  H  F  Q  V  Y  R  M  D  S  T  V  N  A  :  L  A  M  A  K  D  P  E  A  A  F  F  K  R  L  E  G  L  Q  P  C  E  V  S  Q  L  N  A  G  T  H  I  F  A  V  Y  G  L  S  C  F  Y  F  V  E  Y  I  V  L  F  L  K  N  T  I  *  L  L  L  I  T  Q  T  L  K  K  C  L  I  *  F  L  Q  E  I  I  S  L  S  L  L  V  I  L  L  R  L  C  V  P  R  H  T  R  I  Q  L  I  I  S  R  I  S  R  L  R  Y  *  G  R  E  M  S  F  D  S  L  K  Q  N  I  E  R :   H  *  R  G  S  R  K  *  P  I  D  I  A  R  R  S  S  L :   S  K  N  C  S  N  R  E  T  P  Y  T  L  L  S  P  L  Q  G  Q  L  L  R  *  V  A  V  G  V  A  I  S  V  T  E  V  A  V  N  L  L  V  M  T  Q  N  P  I  A  Q  G  T  I  A  V  Q  T  P  R  T  N  T  R  R  E  N  G  S  T  L  T  S  K  D  P  R  R  S  N  Q  T  E  E  F  S  K  C  T  I  C  S  V  F  L  G  F  R  D  V  H  *  F  F  R  N  I  I  F  W  A  R  *  Y  V  Y  F  L  S  I  D  R  R  Y  R  R  V  F  L  F  V  P  V  L  Y  V  F  F  F  C  C  V  S  *  C  T  *  S  M  Y  F  I  I  F  </second_frame>
            <third_frame>   K  K  L  Q  L  K  E  K  K  F  V  H  S  F  F  L :   F  W  E  I  K  V  F  F  L  C  S  I  D  F  C  G  G  K  R  V  *  *  V  V  Q  N  W  R  G  H  R  L  R  W  *  D  E  T  R  M  K  C  W  L  *  R  G  I  R  R  I  R  R  L  R  L  L  I  E  S  L  L  S   : S  I  I  L  T  R  M  L  T  I  L  K  L  Q  N  I  S  R  R  L  H  T  H  I  A  F  Y  L  I  Q  R  K  G  G  N  M  I  W  L  A  S  R :   L  L  K  L  K  E  W  I  W  K  L  I  C  P  T  S  E  L  S  T  Q  C  L  Q  H  C  L   : A  S  W  V  F  L  S  K  Q  L  S  L  R  M  F  L  K  K  L  *  M  E  L  S  R  S  A  L  F  Q  L  V  H  Q  S  V  E  R :   *  K  S  K  M  L  I  F  S  V  *  Q  L  V  T  N  K  Q  K  Q  G  L  *  *  E  L  L  Q  L  P  K  A  N  S  S :   Y  Y  I  L  N  M  M  *  V  G  V  T  A  W  P  C  R :   K  I  V  K  K  Q  A  R  *  P  P  Q  E  C  I  S  C  T  F  K  C  T  E  W  I  Q  L  *  M  R :   *  Q  W  P  K  I  L  K  L  L  S  L  R  G  W  R  V  F  N  L  V  R  S  H  N  *  M  P  A  L  T  Y  L  L  F  M  V  *  A  A  F  I  L  L  N  I  L  F  C  F  *  K  I  L  S  D  C  Y  *  L  R  K  H  *  R  N  V  *  F  N  F  C  R  R  *  F  L  *  A  C  *  L  Y  Y  *  G  S  V  C  Q  D  I  R  G  Y  N  S  *  S  P  G  Y  R  G  S  D  I  E  E  E  K  *  A  S  T  V  *  N  R  I  *  K   : G  I  S  A  V  P  G  S  N  Q  *  I  *  P  G  E  A  V   : C  R  R  T  A  Q  T  E  R  H  H  T  L  F  F  H  R  Y  K  D  S  C  Y  V  K  W  Q  W  E  W  P  F  Q  *  R  K  *  Q  *  T  F  W  *  *  L  K  T  R  *  P  R  G  R  *  Q  F  R  L  Q  G  Q  I  R  E  E  K  M  V  Q  P  *  P  Q  R  I  R  E  E  V  I  R  L  K  N  S  P  N  V  L  F  V  L  F  S  W  A  S  E  T  F  I  N  F  F  E  I  S  F  F  G  H  V  D  M  S  I  F  Y  R  L  I  E  D  I  E  G  F  F  C  L  F  L  Y  C  T  Y  S  S  S  A  V  Y  H  N  V  L  S  Q  C  I  S  L  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0207N23.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16605" stop="16454"/>
                    <exon start="14848" stop="14725"/>
                    <exon start="12698" stop="12616"/>
                    <exon start="12534" stop="12423"/>
                    <exon start="12339" stop="12235"/>
                    <exon start="12125" stop="12075"/>
                    <exon start="10739" stop="10650"/>
                    <exon start="10566" stop="10399"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLRWKKGVMSGSKLEGPSAPVVRRDPYEVLAVTRDSSDQEIKTAYRKLALKYHPDKNANNPEASEHFKEVAYSYSILSDPEKRRQYDMAGFEALEAEGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQNAHFFGVTISDEQAEAGIVVRATSAAQSKFKLLYFEHDVSGGYGLALQEDSEKAGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSQLNAGTHIFAVYGLSCFYFVEYIVLFLKNTI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0207N23.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9677" stop="9429"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQRIREEVIRLKNSPNVLFVLFSWASETFINFFEISFFGHVDMSIFYRLIEDIEGFFCLFLYCTYSSSAVYHNVLSQCISLFS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="22087" PGL_stop="21466"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22087" e_stop="21466"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="22087" e_stop="21466" e_length="622"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22087" stop="21466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341446" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGTCTTGTTGTGTTCCTGCATTAGGTGTTGTGAATTCCCTTGCTGCAGCAAAATCATCGCGCACTTTTACTCCAAGCGCTCCTTCTCTGAACTCCTGTCTTTTCAACTGGAATACCAGCTTGACCAATGCTGGATATGCAACACGTCCGATCGATAACATTTTTCAATTTCACAAGGCAATCAGAAAGGATTTGGAATTTCTGGATGTTGAATCTGGAAAACTGACTGATTGTGATGAGACTTTCCTCAGGAAGTTTTGTGGTCGTTTTCGTCTCCTACGGGGTTTGTATAAAGCTCACAGTAATGCAGAGGATGATATAGTATTTCCAGCTTTGGAATCAAAAGAGACGCTTCATAATGTTAGCCATTCTTACACCTTGGACCACAAACAGGAAGAAAAGCTATTCGAGGATATATCATCTGCACTTGATGAGCTTTCTCAGCTCCGTGAAAACTTGAATGGTGGGAGTTCAGTTAAAGGTCCGTGTAGAAACTCTGGTGCTTGTGACTTACATGAATATTCAAGAAAATACAATGAGCTGGCAACTAAAGTTCAAGCCATGTGCAAATCGATAAAAGTAACCCTGGATCAACATGTTATACGGGAGGAAGTTGAGCTA</gDNA_template>
            <first_frame> S  V  L  L  C  S  C  I  R  C  C  E  F  P  C  C  S  K  I  I  A  H  F  Y  S  K  R  S  F  S  E  L  L  S  F  Q  L  E  Y  Q  L  D  Q  C  W  I  C  N  T  S  D  R  *  H  F  S  I  S  Q  G  N  Q  K  G  F  G  I  S  G  C  *  I  W  K  T  D  *  L  *  *  D  F  P  Q  E  V  L  W  S  F  S  S  P  T  G  F  V  *  S  S  Q  *  C  R  G  *  Y  S  I  S  S  F  G  I  K  R  D  A  S  *  C  *  P  F  L  H  L  G  P  Q  T  G  R  K  A  I  R  G  Y  I  I  C  T  *  *  A  F  S  A  P  *  K  L  E  W  W  E  F  S  *  R  S  V  *  K  L  W  C  L  *  L  T  *  I  F  K  K  I  Q  *  A  G  N  *  S  S  S  H  V  Q  I  D  K  S  N  P  G  S  T  C  Y  T  G  G  S  *  A  </first_frame>
            <second_frame>  Q  S  C  C  V  P  A  L  G  V  V  N  S  L  A  A  A  K  S  S  R  T  F  T  P  S  A  P  S  L  N  S  C  L  F  N  W  N  T  S  L  T  N  A  G  Y  A  T  R  P  I  D  N  I  F  Q  F  H  K  A  I  R  K  D  L  E  F  L  D  V  E  S  G  K  L  T  D  C  D  E  T  F  L  R  K  F  C  G  R  F  R  L  L  R  G  L  Y  K  A  H  S  N  A  E  D  D  I  V  F  P  A  L  E  S  K  E  T  L  H  N  V  S  H  S  Y  T  L  D  H  K  Q  E  E  K  L  F  E  D  I  S  S  A  L  D  E  L  S  Q  L  R  E  N  L  N  G  G  S  S  V  K  G  P  C  R  N  S  G  A  C  D  L  H  E  Y  S  R  K  Y  N  E  L  A  T  K  V  Q  A  M  C  K  S  I  K  V  T  L  D  Q  H  V  I  R  E  E  V  E  L </second_frame>
            <third_frame>   S  L  V  V  F  L  H  *  V  L  *  I  P  L  L  Q  Q  N  H  R  A  L  L  L  Q  A  L  L  L  *  T  P  V  F  S  T  G  I  P  A  *  P  M  L  D  M  Q  H  V  R  S  I  T  F  F  N  F  T  R  Q  S  E  R  I  W  N  F  W  M  L  N  L  E  N  *  L  I  V  M  R  L  S  S  G  S  F  V  V  V  F  V  S  Y  G  V  C  I  K  L  T  V  M  Q  R  M  I  *  Y  F  Q  L  W  N  Q  K  R  R  F  I  M  L  A  I  L  T  P  W  T  T  N  R  K  K  S  Y  S  R  I  Y  H  L  H  L  M  S  F  L  S  S  V  K  T  *  M  V  G  V  Q  L  K  V  R  V  E  T  L  V  L  V  T  Y  M  N  I  Q  E  N  T  M  S  W  Q  L  K  F  K  P  C  A  N  R  *  K  *  P  W  I  N  M  L  Y  G  R  K  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0207N23.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22086" stop="21466"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSCCVPALGVVNSLAAAKSSRTFTPSAPSLNSCLFNWNTSLTNAGYATRPIDNIFQFHKAIRKDLEFLDVESGKLTDCDETFLRKFCGRFRLLRGLYKAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISSALDELSQLRENLNGGSSVKGPCRNSGACDLHEYSRKYNELATKVQAMCKSIKVTLDQHVIREEVEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="23542" PGL_stop="22277"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23542" e_stop="23211"/>
            <exon e_start="23083" e_stop="22858"/>
            <exon e_start="22681" e_stop="22513"/>
            <exon e_start="22400" e_stop="22277"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="0.991"/>
          <exon-intron don_prob="0.992" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.240" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="23542" e_stop="23211" e_length="332"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="23210" i_stop="23084" i_length="127"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23083" e_stop="22858" e_length="226"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.985">
            <gDNA_intron_boundary i_start="22857" i_stop="22682" i_length="176"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22681" e_stop="22513" e_length="169"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.240">
            <gDNA_intron_boundary i_start="22512" i_stop="22401" i_length="112"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="22400" e_stop="22277" e_length="124"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23542" stop="23211"/>
              <exon start="23083" stop="22858"/>
              <exon start="22681" stop="22513"/>
              <exon start="22400" stop="22277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740629" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAGTTAACAAACAAACGCAAGGCTTGTGAAGAGAGTAGAACACACAATAATTCAGATTCTGTTGTTAGAGGCTTAATTGGTCAGGCAGAGAATGTTCCTTGTCCTTGTGAATCTTCTAGCAGGGAATTTCTTGTCTCAAATTTGAATCTTAAAGAATCCACTCTGAATCGCCCGGTTGATGAGATACTGCATTGGCACAAGGCTATTAGAAAGGAGTTGAATGACATAACAGAAGCAGCTAGGGAAATAAAGTTGCGTGGAGATTTTTCTGATTTATCTGCCTTCAACCAGAGGCTTCAGTTTATTGCTGAAGTTTGTATCTTTCATAG : TATTGCCGAGGACAAAGTTATATTTCCTGCAGTAGATGCAGAAATATCATTTGCCCAGGAGCATGCGGAAGAAGAAAACGAGTTTGATAAATTTAGATGCTTGATAGAAAGCGTTCAGAGTGCTGGATCCAACTCAACTTCTGTAGAATTTTATTCAGAACTGTGCTCACAAGCTGATCATATAATGGAGACAGTGGAAAGACACTTCTGTAATGAGGAGGCTCAG : GTTCTTCCACTCGCACGAAAACATTTTAGCGCCAAAAGGCAGCGGGAACTCCTTTACCAGAGCTTGTGTGTTATGCCACTTAGACTCATAGAATGCGTCTTACCATGGTTGGTAGGTTCATTAAGTGAGGAGGAAGCAAGGTCTTTTCTTCAGAACATGCATCTGGCAG : CACCAGCATCAGACACTGCTTTGGTCACACTTTTCTCTGGTTGGGCATGCAAAGGTCGTCCAGATGACATTTGTTTATCTTCAAGTGTAACCGGTTGCTGTCCTGCTAAAATTTTAGCTGGGAA</gDNA_template>
            <first_frame> K  K  L  T  N  K  R  K  A  C  E  E  S  R  T  H  N  N  S  D  S  V  V  R  G  L  I  G  Q  A  E  N  V  P  C  P  C  E  S  S  S  R  E  F  L  V  S  N  L  N  L  K  E  S  T  L  N  R  P  V  D  E  I  L  H  W  H  K  A  I  R  K  E  L  N  D  I  T  E  A  A  R  E  I  K  L  R  G  D  F  S  D  L  S  A  F  N  Q  R  L  Q  F  I  A  E  V  C  I  F  H  S :   I  A  E  D  K  V  I  F  P  A  V  D  A  E  I  S  F  A  Q  E  H  A  E  E  E  N  E  F  D  K  F  R  C  L  I  E  S  V  Q  S  A  G  S  N  S  T  S  V  E  F  Y  S  E  L  C  S  Q  A  D  H  I  M  E  T  V  E  R  H  F  C  N  E  E  A  Q  :  V  L  P  L  A  R  K  H  F  S  A  K  R  Q  R  E  L  L  Y  Q  S  L  C  V  M  P  L  R  L  I  E  C  V  L  P  W  L  V  G  S  L  S  E  E  E  A  R  S  F  L  Q  N  M  H  L  A   : A  P  A  S  D  T  A  L  V  T  L  F  S  G  W  A  C  K  G  R  P  D  D  I  C  L  S  S  S  V  T  G  C  C  P  A  K  I  L  A  G   </first_frame>
            <second_frame>  K  S  *  Q  T  N  A  R  L  V  K  R  V  E  H  T  I  I  Q  I  L  L  L  E  A  *  L  V  R  Q  R  M  F  L  V  L  V  N  L  L  A  G  N  F  L  S  Q  I  *  I  L  K  N  P  L  *  I  A  R  L  M  R  Y  C  I  G  T  R  L  L  E  R  S  *  M  T  *  Q  K  Q  L  G  K  *  S  C  V  E  I  F  L  I  Y  L  P  S  T  R  G  F  S  L  L  L  K  F  V  S  F  I   : V  L  P  R  T  K  L  Y  F  L  Q  *  M  Q  K  Y  H  L  P  R  S  M  R  K  K  K  T  S  L  I  N  L  D  A  *  *  K  A  F  R  V  L  D  P  T  Q  L  L  *  N  F  I  Q  N  C  A  H  K  L  I  I  *  W  R  Q  W  K  D  T  S  V  M  R  R  L  R :   F  F  H  S  H  E  N  I  L  A  P  K  G  S  G  N  S  F  T  R  A  C  V  L  C  H  L  D  S  *  N  A  S  Y  H  G  W  *  V  H  *  V  R  R  K  Q  G  L  F  F  R  T  C  I  W  Q  :  H  Q  H  Q  T  L  L  W  S  H  F  S  L  V  G  H  A  K  V  V  Q  M  T  F  V  Y  L  Q  V  *  P  V  A  V  L  L  K  F  *  L  G  </second_frame>
            <third_frame>   K  V  N  K  Q  T  Q  G  L  *  R  E  *  N  T  Q  *  F  R  F  C  C  *  R  L  N  W  S  G  R  E  C  S  L  S  L  *  I  F  *  Q  G  I  S  C  L  K  F  E  S  *  R  I  H  S  E  S  P  G  *  *  D  T  A  L  A  Q  G  Y  *  K  G  V  E  *  H  N  R  S  S  *  G  N  K  V  A  W  R  F  F  *  F  I  C  L  Q  P  E  A  S  V  Y  C  *  S  L  Y  L  S  *  :  Y  C  R  G  Q  S  Y  I  S  C  S  R  C  R  N  I  I  C  P  G  A  C  G  R  R  K  R  V  *  *  I  *  M  L  D  R  K  R  S  E  C  W  I  Q  L  N  F  C  R  I  L  F  R  T  V  L  T  S  *  S  Y  N  G  D  S  G  K  T  L  L  *  *  G  G  S   : G  S  S  T  R  T  K  T  F  *  R  Q  K  A  A  G  T  P  L  P  E  L  V  C  Y  A  T  *  T  H  R  M  R  L  T  M  V  G  R  F  I  K  *  G  G  S  K  V  F  S  S  E  H  A  S  G  S :   T  S  I  R  H  C  F  G  H  T  F  L  W  L  G  M  Q  R  S  S  R  *  H  L  F  I  F  K  C  N  R  L  L  S  C  *  N  F  S  W  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0207N23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23542" stop="23211"/>
                    <exon start="23083" stop="22858"/>
                    <exon start="22681" stop="22513"/>
                    <exon start="22400" stop="22279"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKLTNKRKACEESRTHNNSDSVVRGLIGQAENVPCPCESSSREFLVSNLNLKESTLNRPVDEILHWHKAIRKELNDITEAAREIKLRGDFSDLSAFNQRLQFIAEVCIFHSIAEDKVIFPAVDAEISFAQEHAEEENEFDKFRCLIESVQSAGSNSTSVEFYSELCSQADHIMETVERHFCNEEAQVLPLARKHFSAKRQRELLYQSLCVMPLRLIECVLPWLVGSLSEEEARSFLQNMHLAAPASDTALVTLFSGWACKGRPDDICLSSSVTGCCPAKILAG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="40894" PGL_stop="43674"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40894" e_stop="41250"/>
            <exon e_start="42374" e_stop="42518"/>
            <exon e_start="43601" e_stop="43674"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.994" e_score="0.994"/>
          <exon-intron don_prob="0.984" acc_prob="0.846" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="40894" e_stop="41250" e_length="357"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.994">
            <gDNA_intron_boundary i_start="41251" i_stop="42373" i_length="1123"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42374" e_stop="42518" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.846">
            <gDNA_intron_boundary i_start="42519" i_stop="43600" i_length="1082"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43601" e_stop="43674" e_length="74"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40894" stop="41250"/>
              <exon start="42374" stop="42518"/>
              <exon start="43601" stop="43674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40895" stop="41198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368225" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACAGCTTTAAAAATCTTTAAACAACAACCTACTATTATATTATAAAACAAAAAAAACTACACAAAATTTCAACTTTCAGTGAGTTTACTTCAATGGCGACTCAGTATAATCTTTCGTTAATCATCAAGAATCCATCAAATGAAGATGAATTTCTACTTGTTAAGCAAAACCCACCTCCTAAATTCAACGATCCTGAGTATGATTCTTTTTCCGATTCCCCTTTATGGGATTTTCCTTCTTCACCATTGTTACCTCTTGATTCTCCTTCAGATAATCAATTTTCTATACAAGTCCCTGAATCTTGCTCAGATGAGGTTGATTTAAGTAAATTTGATCTTAATTCAGCTATTCATAAG : GTTCTAGAGCAAGTGGAATTAGAGGATACCCCAGTTGAGTGGAAATTCATGAAGTATGTACAGGAGCCTGAATTTGGACCAGGATTGCCAGTAAAGACGATCTACATCATTGGAACTTTGGGTCCTAAAAATGGAAAATTAAAGG : ATGTTGAGTTCTGCAAGTGGATGACCACTGAAGGATGCATTAGTATGCTTGCTGAAGTGAAGCCTTGCAATGAC</gDNA_template>
            <first_frame> Y  S  F  K  N  L  *  T  T  T  Y  Y  Y  I  I  K  Q  K  K  L  H  K  I  S  T  F  S  E  F  T  S  M  A  T  Q  Y  N  L  S  L  I  I  K  N  P  S  N  E  D  E  F  L  L  V  K  Q  N  P  P  P  K  F  N  D  P  E  Y  D  S  F  S  D  S  P  L  W  D  F  P  S  S  P  L  L  P  L  D  S  P  S  D  N  Q  F  S  I  Q  V  P  E  S  C  S  D  E  V  D  L  S  K  F  D  L  N  S  A  I  H  K  :  V  L  E  Q  V  E  L  E  D  T  P  V  E  W  K  F  M  K  Y  V  Q  E  P  E  F  G  P  G  L  P  V  K  T  I  Y  I  I  G  T  L  G  P  K  N  G  K  L  K   : D  V  E  F  C  K  W  M  T  T  E  G  C  I  S  M  L  A  E  V  K  P  C  N  D </first_frame>
            <second_frame>  T  A  L  K  I  F  K  Q  Q  P  T  I  I  L  *  N  K  K  N  Y  T  K  F  Q  L  S  V  S  L  L  Q  W  R  L  S  I  I  F  R  *  S  S  R  I  H  Q  M  K  M  N  F  Y  L  L  S  K  T  H  L  L  N  S  T  I  L  S  M  I  L  F  P  I  P  L  Y  G  I  F  L  L  H  H  C  Y  L  L  I  L  L  Q  I  I  N  F  L  Y  K  S  L  N  L  A  Q  M  R  L  I  *  V  N  L  I  L  I  Q  L  F  I  R :   F  *  S  K  W  N  *  R  I  P  Q  L  S  G  N  S  *  S  M  Y  R  S  L  N  L  D  Q  D  C  Q  *  R  R  S  T  S  L  E  L  W  V  L  K  M  E  N  *  R  :  M  L  S  S  A  S  G  *  P  L  K  D  A  L  V  C  L  L  K  *  S  L  A  M   </second_frame>
            <third_frame>   Q  L  *  K  S  L  N  N  N  L  L  L  Y  Y  K  T  K  K  T  T  Q  N  F  N  F  Q  *  V  Y  F  N  G  D  S  V  *  S  F  V  N  H  Q  E  S  I  K  *  R  *  I  S  T  C  *  A  K  P  T  S  *  I  Q  R  S  *  V  *  F  F  F  R  F  P  F  M  G  F  S  F  F  T  I  V  T  S  *  F  S  F  R  *  S  I  F  Y  T  S  P  *  I  L  L  R  *  G  *  F  K  *  I  *  S  *  F  S  Y  S  *   : G  S  R  A  S  G  I  R  G  Y  P  S  *  V  E  I  H  E  V  C  T  G  A  *  I  W  T  R  I  A  S  K  D  D  L  H  H  W  N  F  G  S  *  K  W  K  I  K  G :   C  *  V  L  Q  V  D  D  H  *  R  M  H  *  Y  A  C  *  S  E  A  L  Q  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0207N23.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40915" stop="41250"/>
                    <exon start="42374" stop="42518"/>
                    <exon start="43601" stop="43674"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTTYYYIIKQKKLHKISTFSEFTSMATQYNLSLIIKNPSNEDEFLLVKQNPPPKFNDPEYDSFSDSPLWDFPSSPLLPLDSPSDNQFSIQVPESCSDEVDLSKFDLNSAIHKVLEQVELEDTPVEWKFMKYVQEPEFGPGLPVKTIYIIGTLGPKNGKLKDVEFCKWMTTEGCISMLAEVKPCND</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="43709" PGL_stop="49430"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43709" e_stop="43761"/>
            <exon e_start="44315" e_stop="44494"/>
            <exon e_start="45442" e_stop="45517"/>
            <exon e_start="46021" e_stop="46098"/>
            <exon e_start="46850" e_stop="46935"/>
            <exon e_start="47463" e_stop="47536"/>
            <exon e_start="47839" e_stop="47884"/>
            <exon e_start="48877" e_stop="48986"/>
            <exon e_start="49349" e_stop="49430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.567" e_score="1.000"/>
          <exon-intron don_prob="0.841" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.086" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.667" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43709" e_stop="43761" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.931">
            <gDNA_intron_boundary i_start="43762" i_stop="44314" i_length="553"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44315" e_stop="44494" e_length="180"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.567">
            <gDNA_intron_boundary i_start="44495" i_stop="45441" i_length="947"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45442" e_stop="45517" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.841" acc_prob="0.958">
            <gDNA_intron_boundary i_start="45518" i_stop="46020" i_length="503"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46021" e_stop="46098" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="46099" i_stop="46849" i_length="751"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46850" e_stop="46935" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.086" acc_prob="0.992">
            <gDNA_intron_boundary i_start="46936" i_stop="47462" i_length="527"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47463" e_stop="47536" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.941" acc_prob="0.667">
            <gDNA_intron_boundary i_start="47537" i_stop="47838" i_length="302"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47839" e_stop="47884" e_length="46"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="47885" i_stop="48876" i_length="992"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="48877" e_stop="48986" e_length="110"/>
          </exon>
          <intron i_serial="8" don_prob="0.935" acc_prob="0.964">
            <gDNA_intron_boundary i_start="48987" i_stop="49348" i_length="362"/>
          </intron>
          <exon e_serial="9" e_score="0.988">
            <gDNA_exon_boundary e_start="49349" e_stop="49430" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43709" stop="43761"/>
              <exon start="44315" stop="44494"/>
              <exon start="45442" stop="45517"/>
              <exon start="46021" stop="46098"/>
              <exon start="46850" stop="46935"/>
              <exon start="47463" stop="47536"/>
              <exon start="47839" stop="47875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43709" stop="43761"/>
              <exon start="44315" stop="44494"/>
              <exon start="45442" stop="45517"/>
              <exon start="46021" stop="46098"/>
              <exon start="46850" stop="46935"/>
              <exon start="47463" stop="47496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43709" stop="43761"/>
              <exon start="44315" stop="44494"/>
              <exon start="45442" stop="45517"/>
              <exon start="46021" stop="46098"/>
              <exon start="46850" stop="46935"/>
              <exon start="47463" stop="47483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44467" stop="44494"/>
              <exon start="45442" stop="45517"/>
              <exon start="46021" stop="46098"/>
              <exon start="46850" stop="46935"/>
              <exon start="47463" stop="47536"/>
              <exon start="47839" stop="47884"/>
              <exon start="48877" stop="48986"/>
              <exon start="49349" stop="49430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323478" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGATTCAACAAAATCTGGGACATGGAAAATTCCTCCCACCTTGAAATGTCAG : GAGTACCCTCTTGGTGTTAAAATTATACCTATGGAAAGTAGAACAGCTAAACCTTTTCGTACAACAAACTTAATTGTTTTCCTGCCTGAATGCAATGCTAATGAGCATGATGATGGTTTTATCGCTCATGGGGAAGCACTCATAGTAGACCCAGGATGTAAGTCATCTTCATATGAACAG : CTCAAGGAAATCATTGCTGCTTTGCCGAGAAAACTAGTCGTCTTTGTGACACATCATCATAATGATCATGTTGATG : GTCTTTCAGTAGTCCAGAAGTACAGTCCCGATGCTCGTCTTTTGGCTCATGAAAATACGATTCGTCGAATTAGAAAAG : ATGATTGGTCTCTCCCATATGTTTCAGTTTCTGGATCTGAGGAAATTTGCATTGGCAATCAGAAATTAAGAATTATCTTAGCACCG : GGACATACAGATGGACATATGGCACTGCTTCATGTTAGTACAAACTCGTTGATCGTAGGGGATCATTGTGTGGG : CCAAGGAAGTGCTCTCTTAGATAGCGCGTCTGGTGGAAATATGCAG : GATTACTTTCAGACAACATACAAATTCATTGAGCTCTCTCCTCATGCGTTGATTCCCATGCACGGAAGAACTAATATGTGGCCAAAACACATGCTCTGTGGGTATCTCAA : AAACCGGAGAAACAGAGAATCAACCATCTTAATGGCAATAGAGAATGGTGCTAAAACATTGTTTGACATAGTTGCTTACACT</gDNA_template>
            <first_frame> M  I  Q  Q  N  L  G  H  G  K  F  L  P  P  *  N  V  R :   S  T  L  L  V  L  K  L  Y  L  W  K  V  E  Q  L  N  L  F  V  Q  Q  T  *  L  F  S  C  L  N  A  M  L  M  S  M  M  M  V  L  S  L  M  G  K  H  S  *  *  T  Q  D  V  S  H  L  H  M  N  S :   S  R  K  S  L  L  L  C  R  E  N  *  S  S  L  *  H  I  I  I  M  I  M  L  M  :  V  F  Q  *  S  R  S  T  V  P  M  L  V  F  W  L  M  K  I  R  F  V  E  L  E  K  :  M  I  G  L  S  H  M  F  Q  F  L  D  L  R  K  F  A  L  A  I  R  N  *  E  L  S  *  H  R :   D  I  Q  M  D  I  W  H  C  F  M  L  V  Q  T  R  *  S  *  G  I  I  V  W   : A  K  E  V  L  S  *  I  A  R  L  V  E  I  C  R :   I  T  F  R  Q  H  T  N  S  L  S  S  L  L  M  R  *  F  P  C  T  E  E  L  I  C  G  Q  N  T  C  S  V  G  I  S   : K  T  G  E  T  E  N  Q  P  S  *  W  Q  *  R  M  V  L  K  H  C  L  T  *  L  L  T   </first_frame>
            <second_frame>  *  F  N  K  I  W  D  M  E  N  S  S  H  L  E  M  S   : G  V  P  S  W  C  *  N  Y  T  Y  G  K  *  N  S  *  T  F  S  Y  N  K  L  N  C  F  P  A  *  M  Q  C  *  *  A  *  *  W  F  Y  R  S  W  G  S  T  H  S  R  P  R  M  *  V  I  F  I  *  T   : A  Q  G  N  H  C  C  F  A  E  K  T  S  R  L  C  D  T  S  S  *  *  S  C  *  W :   S  F  S  S  P  E  V  Q  S  R  C  S  S  F  G  S  *  K  Y  D  S  S  N  *  K  R :   *  L  V  S  P  I  C  F  S  F  W  I  *  G  N  L  H  W  Q  S  E  I  K  N  Y  L  S  T   : G  T  Y  R  W  T  Y  G  T  A  S  C  *  Y  K  L  V  D  R  R  G  S  L  C  G  :  P  R  K  C  S  L  R  *  R  V  W  W  K  Y  A   : G  L  L  S  D  N  I  Q  I  H  *  A  L  S  S  C  V  D  S  H  A  R  K  N  *  Y  V  A  K  T  H  A  L  W  V  S  Q  :  K  P  E  K  Q  R  I  N  H  L  N  G  N  R  E  W  C  *  N  I  V  *  H  S  C  L  H  </second_frame>
            <third_frame>   D  S  T  K  S  G  T  W  K  I  P  P  T  L  K  C  Q  :  E  Y  P  L  G  V  K  I  I  P  M  E  S  R  T  A  K  P  F  R  T  T  N  L  I  V  F  L  P  E  C  N  A  N  E  H  D  D  G  F  I  A  H  G  E  A  L  I  V  D  P  G  C  K  S  S  S  Y  E  Q  :  L  K  E  I  I  A  A  L  P  R  K  L  V  V  F  V  T  H  H  H  N  D  H  V  D   : G  L  S  V  V  Q  K  Y  S  P  D  A  R  L  L  A  H  E  N  T  I  R  R  I  R  K   : D  D  W  S  L  P  Y  V  S  V  S  G  S  E  E  I  C  I  G  N  Q  K  L  R  I  I  L  A  P  :  G  H  T  D  G  H  M  A  L  L  H  V  S  T  N  S  L  I  V  G  D  H  C  V  G :   Q  G  S  A  L  L  D  S  A  S  G  G  N  M  Q  :  D  Y  F  Q  T  T  Y  K  F  I  E  L  S  P  H  A  L  I  P  M  H  G  R  T  N  M  W  P  K  H  M  L  C  G  Y  L  K :   N  R  R  N  R  E  S  T  I  L  M  A  I  E  N  G  A  K  T  L  F  D  I  V  A  Y  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0207N23.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43711" stop="43761"/>
                    <exon start="44315" stop="44494"/>
                    <exon start="45442" stop="45517"/>
                    <exon start="46021" stop="46098"/>
                    <exon start="46850" stop="46935"/>
                    <exon start="47463" stop="47536"/>
                    <exon start="47839" stop="47884"/>
                    <exon start="48877" stop="48986"/>
                    <exon start="49349" stop="49430"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSTKSGTWKIPPTLKCQEYPLGVKIIPMESRTAKPFRTTNLIVFLPECNANEHDDGFIAHGEALIVDPGCKSSSYEQLKEIIAALPRKLVVFVTHHHNDHVDGLSVVQKYSPDARLLAHENTIRRIRKDDWSLPYVSVSGSEEICIGNQKLRIILAPGHTDGHMALLHVSTNSLIVGDHCVGQGSALLDSASGGNMQDYFQTTYKFIELSPHALIPMHGRTNMWPKHMLCGYLKNRRNRESTILMAIENGAKTLFDIVAYT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 24 chains have been computed
$ 
$ memory statistics:
$ 33864 bytes spliced alignments in total
$ 15 spliced alignments have been stored
$ 2257 bytes was the average size of a spliced alignment
$ 11816 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2363 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 24 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:24:47
-->
