<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:27:42"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0207N23-miJoa/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1877" ref_strand="+" ref_description="SGN-M1877 T1264 [cos_markers]">
      <seq>aaaaaagctccagctgaaagaaaaaaaatttgttcattctttttctggattttgggaaatcaaggttttttttttgtgttctattgatttttgcggtggaaaaagggtgtaatgagtggttcaaaattggaggggccatcggctccggtggtaagacgagacccgtatgaagtgttggctgtgacgagggattcgtcggatcaggagattaagactgcttatagaaagcttgctctcaagtatcatcctgacaagaatgctaacaatcctgaagcttcagaacatttcaaggaggttgcatactcatatagcattctatctgatccagagaaaaggaggcaatatgatatggctggctttgaggctcttgaagctgaaggaatggatatggaaattgatttgtccaaccttggaactgtcaacacaatgtttgcagcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0207N23-miJoa/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0207N23.1" temp_strand="-" temp_description="C05HBa0207N23.1  AC225119.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0207N23 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="17231" stop="12321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16932" g_stop="16885" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16884" i_stop="16645" i_length="240">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.101" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16644" g_stop="16454" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="239" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16453" i_stop="14849" i_length="1605">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14848" g_stop="14725" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="363" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14724" i_stop="12699" i_length="2026">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12698" g_stop="12621" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="441" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0207N23.1" gen_strand="-" ref_id="SGN-M1877" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0207N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16932" e_stop="16885"/>
          <exon e_start="16644" e_stop="16454"/>
          <exon e_start="14848" e_stop="14725"/>
          <exon e_start="12698" e_stop="12621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGCTCCAGCTGAAAGAAAAAAAATTTGTTCATTCTTTTTTTTTTTTGGGTAAATTTCTCTTAAGCCCTAGCTATTTTAATTCAATTTTTAGTGTAATTTCATTGATTTTGATTCCTGTTATTAGATCTCTCTGTTGATTGATGTTATACTTGTTGAAAAAGTTTGATATTTATCCCAGAAAACGCAAAGGGGTGATTCAATTTTATGAATTTTGTGTTAAAAACTGATTAATTCATCTCGAATTTTAATGGGTTTGTGTTAAAATCTTGTCTTTTGGCTGTAGATTTTGGGAAATCAAGGTTTTTTTTTTGTGTTCTATTGATTTTTGCGGTGGAAAAAGGGTGTAATGAGTGGTTCAAAATTGGAGGGGCCATCGGCTCCGGTGGTAAGACGAGACCCGTATGAAGTGTTGGCTGTGACGAGGGATTCGTCGGATCAGGAGATTAAGACTGCTTATAGAAAGCTTGCTCTCAAGTAAGTGATTCCTAATATATGTTTGTTAATTTCAGTTTATAGTTAGTTTTTGCTATAATGGTGTTTGAATGTGGTATTGGAATGAATAGACATGAATAAAGCAGAATATGTGTAGCAAGTTTATGCAGCTGACAGAAGTAGTTGGAATTTAAGGCGTTTTTACCTCGACTAATTACACGGATACATGTCAACCTCCCACCAGCAAATAGGGACTAAGGCACAGCCATACCCTTGGGTGCTTTAAGGGTGTTATTGAATGATGGTATAACTGAGGTGTAAGTGTACCTAGTAAACCTAAATAGAAGTTTAGTGAGGATGGTGAAATGCGTAAACATTTCTGCTGGTATTTTTTTGGAGCTTGTTGTTACCACGCGGAGTTATTTAATTACGGTAGTAAGACAAAAATTATTGGAATTTATGGTCAAGTAATTAATTAGGTTATGTGATGATTGCCACATATTGTCATTTGAAGAAATAAAATATAGATGGAAGAGTCTTGCTTTTACATATATATACCATTGTTATCAAAAGCAGAAAGTGCAAAAAAGCTCTTAAGGTTCGGTGGGACTTTAAGCTCAAATATAGTTTGGACTTTTTTGGGAAAAGGCGCAAATGGAGAAAACATACAAATATATATATATATATATATATATATATATATATATATATATATATATATATTTGGCCTCTCCATACCAAGAAAGCGAATCACAATGGATCGAAGCCCTCCCTTTCCTTCCAATTAGTGAGATTCTATCTCTTACTTGGGAAATTGTGGTCAAGCCCTCCCTTTATTCCTCGGAATCGAGCGGGCAGCAAGAATTAGAATCAACCTATATAACATCTGTTCCCATGTAGTCGGCATTCTAGAAGCAAAGCTTCCCGGTCGCCTGCCTCCTTGTGTGGAAATGCTTTTCATGATCTCCAGCTCTTTCCCACCAGCTCGTTCTTTACTAGGCATCTAGGCGAACCCGCCGGGTTAATTAACTCAACGTAAAGAAAGCTCATTAGGTCAAAACTAGGGGAGTGCTTGCTAATAGCGAAAGGTTAACATCTCTCCGCCCTTATTAGTAGTAGCGAACATCAGGTAACTTCGTGCTGTAAAACGACAGATTGGTATCAGTTAGATGTGAAAAATGCCTTCTTGCATGGGGACTCGCACGAGGAGGTGTATATAGAGATAGCACCCGGATATGGAAGGATAGGGGAGATTAACCAACCAAAGTTGGCTTCAGTCATTATGTATTGAACAGAAGCAAAAGCCTCTCTCTCTCTCTCTCTATATATATATCTCGTCAGGAAATTCTCATTTACAAGGAAAAGCATGTCTTAGAGCTTTGATACGACATTAAAGCACACATTAAGCGAGTCGAATCACTAAATGCATTTTGAGCCTCGCTTTTGGGCTTACGCGAGCCTTGGATAACATTGATACATACGTATGATGCATCCGATGGAGAAAAATAATGGTGATGGGAAGTGAAATCCGGTTATTGAGTAAAAAGTGGCTGAAATTTTTCGGGCTGTGGATTTGGGATTTGGGGAACTTTTTGATTTGATACTTGCTCTTGTGGATGAATAATGGAATGCATAAATTATTGGCAGGTATCATCCTGACAAGAATGCTAACAATCCTGAAGCTTCAGAACATTTCAAGGAGGTTGCATACTCATATAGCATTCTATCTGATCCAGAGAAAAGGAGGCAATATGATATGGCTGGCTTCGAGGTACTCACCCCCTGCCTTTGTAAAAGACATATTTTTTTCAGACATGGTTGTTCATAATGAGCAATGATGTATGATGCGAAAGACTTTTACTTATTTTGCTGTTTTAAAGACTGAAATCATGGAGAATATTTTGTTTGATTTATATATCCTTACATTTGCTTGTTATGTCTCATGTTACATTTGAATGAGGTTACTGATTTAGCAGTAGAAAGAAAGTAGTTCATATATAGAACTCTTTATGTTTTTGATTTCAAGAAGGGTTATAGAAATAAGAGCTAGCTTAGGCAAATATTGCTTATATGATAGGTTGTAACTTTATGGCTTCAACCGTAGAAAGATTGAATACTAAGTGCTAACAATATAAACTTAACATATCGTAAGGGTTCAACAAAATGTGGATACTTGAAAGTTGCAGGATAGTGCTGCAGCAATCTAGATGTTAGAACACTCCTTTCATTCTTGAAGTTTCTGTCTTGTTGTATTTGTGGATATTAATAGGTGTAAAGCTGAAAAGTCATCCTATCAACTGCCATTTTCTGGACTCCTCACTTCTCCTGGAGATTTCTAGTCACGTATTGTTTATAGGGTTCCCAAAATATATTAGAAACAGAAACATGTTACAACGCAACATGTACCTACAAAGGCAGTCTTTGTTTTCATGTTAGTAGCAAAAGGTGCTTCTATTGTATGTTACAAGATCTTCCTAATGCCAACATCTTTCAGTTCGAAGGTTATAGTTCGTCTAAGTGATATTATTCATGTAAGGAATATATAAAATTTTATGCTAGAAATAAGTGAGTTTTAAGTACAAGGAAAGGATCTAGCTACTGGACATTGTCCCAATAGACCAGATATGCACATAAAAATGCATATTGGCCTAGCTAGGATAGAAATTGTGATTGTCCAGCCATTTGGGGAGATGACTCTACTTGCCAACTTTAATTTGAATCTCTTTGGATGATGAGCTTGGTAATAGAATCTGGTAGTTGTCTTTGATGTTAGAAAATTCTGACATTCTTTTCTCTCCATATATGATAAACAACAGCAGCCAACATCATCCTATACTCTTTAGCCTTGAAAGACTTCTCCTTAATTCATCCTTGTACGGCCACACTAGATCATCTCCCCAGGTCGTAGGAGCTCTTTTGATGTTCATCCATCTTTGCAATTTCCTCCAACTCTTAGCAGAAAAATCACAGGTAATGAATAGATGTGATATATTTTCCTCAGTCAGTTCACACAGGGTGCAATTCTGGTCATCAAGTATCCCCGTATAAACAATCTGTCTTTGGTTGATAATCTTTTGTGAGCAGCCAGTCGCAGTATTAAAATCCATCTTGGTAGCCCTTAGTTCTTACATGTCAGCCTTCCCCAGTTTAGGTTCCACCCTTGCGGACCCCAACTGTCTGCCACTGCGACTTCAGGATTCAAATTCGAAACCGTCATGTCATTGCACGTGTACTTCAAGGAATCATGTCCTAACCAGTTTTCAATTAAGAAAGATGTATATCTTCCATTCCCTTCTATAATGTCAATATTTGGAACCAAGAGAGGCCAAAAAACCTTGATGGACCTCCACACACTGAACCCATATAGTGTCGTTACTGCCCTTGAGACTCAATGTCCCGTAGACCATACTTTTCGCTGATGACCTCTTTCCATAGTGCTAGCTCTTCCTTACAAAATCTCCAAGTCCATTTCATCAGTAAGCTTTTGTTGTATAGTTTCAAAAATCTTATGCCTAGATATCTTGTTAAGTGTAAGATTTCTCCAATTAACAAGGTGAAAACATCTCCTTTTTGTTGCCTTGTATATGCTCTTCGCCTTTTATTTTAATCATTCACTTTACTCAGAGTATCGATATCATTTAGTTATTTTTGTCTGGGTCAATAGGCAGTTTGTGTTGGAAGCCTGAGTTCCAATTCTGGCTTTCTTTGGCAAGCTATAGCTGATAAAACTTCTTGAATCTACTATGCTCAAGGAATGCCATTTCTGTATTCTTTTGACATTTTTCTTTAATTTTAAGGCTCTTGAAGCTGAAGGAATGGATATGGAAATTGATTTGTCCAACCTCGGAACTGTCAACACAATGTTTGCAGCATTG</genome_strand>
        <mrna_strand>AAAAAAGCTCCAGCTGAAAGAAAAAAAATTTGTTCATTCTTTTTCTGG................................................................................................................................................................................................................................................ATTTTGGGAAATCAAGGTTTTTTTTTTGTGTTCTATTGATTTTTGCGGTGGAAAAAGGGTGTAATGAGTGGTTCAAAATTGGAGGGGCCATCGGCTCCGGTGGTAAGACGAGACCCGTATGAAGTGTTGGCTGTGACGAGGGATTCGTCGGATCAGGAGATTAAGACTGCTTATAGAAAGCTTGCTCTCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCATCCTGACAAGAATGCTAACAATCCTGAAGCTTCAGAACATTTCAAGGAGGTTGCATACTCATATAGCATTCTATCTGATCCAGAGAAAAGGAGGCAATATGATATGGCTGGCTTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTGAAGCTGAAGGAATGGATATGGAAATTGATTTGTCCAACCTTGGAACTGTCAACACAATGTTTGCAGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="16932" PGL_stop="12621"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16932" e_stop="16885"/>
            <exon e_start="16644" e_stop="16454"/>
            <exon e_start="14848" e_stop="14725"/>
            <exon e_start="12698" e_stop="12621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.101" e_score="0.917"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.990" e_score="0.992"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="16932" e_stop="16885" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.101">
            <gDNA_intron_boundary i_start="16884" i_stop="16645" i_length="240"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16644" e_stop="16454" e_length="191"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="16453" i_stop="14849" i_length="1605"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="14848" e_stop="14725" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.990">
            <gDNA_intron_boundary i_start="14724" i_stop="12699" i_length="2026"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="12698" e_stop="12621" e_length="78"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16932" stop="16885"/>
              <exon start="16644" stop="16454"/>
              <exon start="14848" stop="14725"/>
              <exon start="12698" stop="12621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAAGCTCCAGCTGAAAGAAAAAAAATTTGTTCATTCTTTTTTTTT : ATTTTGGGAAATCAAGGTTTTTTTTTTGTGTTCTATTGATTTTTGCGGTGGAAAAAGGGTGTAATGAGTGGTTCAAAATTGGAGGGGCCATCGGCTCCGGTGGTAAGACGAGACCCGTATGAAGTGTTGGCTGTGACGAGGGATTCGTCGGATCAGGAGATTAAGACTGCTTATAGAAAGCTTGCTCTCAA : GTATCATCCTGACAAGAATGCTAACAATCCTGAAGCTTCAGAACATTTCAAGGAGGTTGCATACTCATATAGCATTCTATCTGATCCAGAGAAAAGGAGGCAATATGATATGGCTGGCTTCGAG : GCTCTTGAAGCTGAAGGAATGGATATGGAAATTGATTTGTCCAACCTCGGAACTGTCAACACAATGTTTGCAGCATTG</gDNA_template>
            <first_frame> Q  K  A  P  A  E  R  K  K  I  C  S  F  F  F  F  :  I  L  G  N  Q  G  F  F  F  V  F  Y  *  F  L  R  W  K  K  G  V  M  S  G  S  K  L  E  G  P  S  A  P  V  V  R  R  D  P  Y  E  V  L  A  V  T  R  D  S  S  D  Q  E  I  K  T  A  Y  R  K  L  A  L  K :   Y  H  P  D  K  N  A  N  N  P  E  A  S  E  H  F  K  E  V  A  Y  S  Y  S  I  L  S  D  P  E  K  R  R  Q  Y  D  M  A  G  F  E  :  A  L  E  A  E  G  M  D  M  E  I  D  L  S  N  L  G  T  V  N  T  M  F  A  A  L </first_frame>
            <second_frame>  K  K  L  Q  L  K  E  K  K  F  V  H  S  F  F  L :   F  W  E  I  K  V  F  F  L  C  S  I  D  F  C  G  G  K  R  V  *  *  V  V  Q  N  W  R  G  H  R  L  R  W  *  D  E  T  R  M  K  C  W  L  *  R  G  I  R  R  I  R  R  L  R  L  L  I  E  S  L  L  S   : S  I  I  L  T  R  M  L  T  I  L  K  L  Q  N  I  S  R  R  L  H  T  H  I  A  F  Y  L  I  Q  R  K  G  G  N  M  I  W  L  A  S  R :   L  L  K  L  K  E  W  I  W  K  L  I  C  P  T  S  E  L  S  T  Q  C  L  Q  H   </second_frame>
            <third_frame>   K  S  S  S  *  K  K  K  N  L  F  I  L  F  F   : Y  F  G  K  S  R  F  F  F  C  V  L  L  I  F  A  V  E  K  G  C  N  E  W  F  K  I  G  G  A  I  G  S  G  G  K  T  R  P  V  *  S  V  G  C  D  E  G  F  V  G  S  G  D  *  D  C  L  *  K  A  C  S  Q  :  V  S  S  *  Q  E  C  *  Q  S  *  S  F  R  T  F  Q  G  G  C  I  L  I  *  H  S  I  *  S  R  E  K  E  A  I  *  Y  G  W  L  R   : G  S  *  S  *  R  N  G  Y  G  N  *  F  V  Q  P  R  N  C  Q  H  N  V  C  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0207N23.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16605" stop="16454"/>
                    <exon start="14848" stop="14725"/>
                    <exon start="12698" stop="12621"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLRWKKGVMSGSKLEGPSAPVVRRDPYEVLAVTRDSSDQEIKTAYRKLALKYHPDKNANNPEASEHFKEVAYSYSILSDPEKRRQYDMAGFEALEAEGMDMEIDLSNLGTVNTMFAAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 3 chains have been computed
$ 
$ memory statistics:
$ 2280 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 5624 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5624 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 3 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:27:46
-->
