<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:23:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746054" ref_strand="+" ref_description="SGN-E746054 [GI|47105348]">
      <seq>ggcgtaaaattcactctgtaactatggatgaaaacgataagcaggttgataatgatccattacctggtggtggtggtggtggtgcagcggagttcaccggcgctactactgaatcaagctggtcactcggtggtggagatgatgaatcggataatgtttacttcttcggtactagtagtactgatagagagagcagtatattaaccgaattcggctggaattttcaaccgcacggaaatagagatgttcgcgccggtggtgacggtagtcgatttgatcggatcgatgaggatttggcgggaaatagtactacaactactgcttctgtttctgcttctgtttctattactgaaccgacggtgacggagaaaatcaccgacgaacctgtttcatctagctgttctgatgatcccccggagaaatctacagcttccggtagctcctccgcctctcgaccgccgtccgatacagcaagcaaggttaaaaagaagggtcagaaacgaatcaggcagccccgctttgcatttatgaccaaaagtgaagttgatcatcttgaagatggctatagatggaggaaatatggccaaaaagctgttaaaaacagtccatttccaaggagttattatcgttgtacaaatacaaagtgtacagtaaagaaaagagtggagagatcctctgaagattcctcaattgtaatcacaacatatgaaggacaacattgtcaccatacagttggatttcctagaggtggacttatcaatcacgaagcatttacatctcaattaacacctttaccctcacaattctatcatccatccggtgttcaataccctcatgaattagttcctatgagtagccccgctgcaccagaatcacatacaatgcctggtgaaaccggacccgaacctattagattgccagaaacaagtcaaccagatgctacacaacaaccaactgatgaaggattgcttggagatattgtacctcctgggatgcgaagcagataatataaagggtaatatattccgtttcttaatttgcattaatttacatatatttttttatttcatcaatgacatagtatttgaacgttacacgagtgcgcctacacaagtgtaagtgtatgtgttttattcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="4956" stop="1136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4657" g_stop="4186" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4185" i_stop="2684" i_length="1502">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2683" g_stop="2540" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="616" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2539" i_stop="1965" i_length="575">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.499" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1964" g_stop="1437" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="1144" r_length="528" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1145" polyA_stop="1154"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E746054" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1144</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4657" e_stop="4186"/>
          <exon e_start="2683" e_stop="2540"/>
          <exon e_start="1964" e_stop="1437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGTAAAATTCACTCTGTAACTATGGATGAAAACGATAAGCAGGTTGATAATGATCCATTACCTGGTGGTGGTGGTGGTGGTGCAGCGGAGTTCACCGGCGCTACTACTGAATCAAGCTGGTCACTCGGTGGTGGAGATGATGAATCGGATAATGTTTACTTCTTCGGTACTAGTAGTACTGATAGAGAGAGCAGTATATTAACCGAATTCGGCTGGAATTTTCAACCGCACGGAAATAGAGATGTTCGCGCCGGTGGTGACGGTAGTCGATTTGATCGGATCGATGAGGATTTGGCGGGAAATAGTACTACAACTACTGCTTCTGTTTCTGCTTCTGTTTCTATTACTGAACCGACGGTGACGGAGAAAATCACCGACGAACCTGTTTCATCTAGCTGTTCTGATGATCCCCCGGAGAAATCTACAGCTTCCGGTAGCTCCTCCGCCTCTCGACCGCCGTCCGATACAGCGTGAGTCATGTGTTTATCATCGACTTCTCTCTAAGTATGTCTAAATTCGTAATTAACTGCGATTTGAAATGGTAAAAATAAGGAGTAAAACGCCATTAACGTGTCCGTACGTAGGTGTAGAAAAAATGTCAAGTGGTTCACGCAAGTTGAGGGAAGAGAAGAGAGGTATTATCGTAATTTTAATCATCAAGGATGGGCTTTTCGGTATTTGCTCACTTTTCTGTGGCTTTAAAACAGCCGTCGTTGCGGCGGGAATGGCGTGGATGAATTTTTTCCTCTAAAATTAAATATCGTAATAATAATTAAAATTAACTGTTAAGGAAAAGTATTTTTTTTAAAATTTCTTTTTATATAAAAAAGTAACTTGCGATAACTCTTCCCTAATAATGGTTTAGGTGTAATCTCTTACAAAATTAGTTTCTTCTACTTCATTATTTCGTGGTCCATTGCTTCGTACATTAGTATTTAAAGAAAGAAAAAAGGAATAGGTACAATGTGGAAACTTTTAACTGTTAAAGCAATAATAAAGTTATCTTAGTGTGATAGATCTGCTAAAATTGTAAAATTAGTCATCAATATAGCTTTTAGTCCGTTTTCATATGAATACAGAATACTTTGTGCAAATTACTGATAAATAAATGAATTTTGGTTTGTGTGAACTCTCAAGGTTCATTGCATGCATTTCTCTTCGTTGTGGTCTGCATTGTTCTTGTAGTATAACCTAATTATACAAGCCCAAGTGAACTTTTGTTTTTTTGTTTTTTAAACATTTAATATATTTCGTTAATAATAAATTGAACTAAGGTAGAGTTACTTAAAGCAAACAAACATGAAGAGAATTTGGATACGTTTTTATAAGTATTAAGTTCAACTGCAGACTCTTCAATTTTTTATGTTGCATCCGTATCGGATTCTTCAAAAATACACTATGTTTGGCGAATCCAATACGCACCTATTGACCTTTTTGAAGAGTTCGAGCAACTGTACTACTATTTTGATGTTGTTTAGTAGTATTACGCTGCCCACTATATTTATAAGGGTTTCTAAATTTCAACTAAGTTTGAGCAGCTAGATAAACATAACTTGTTACTTATCAATATATAACAAGAATCAGAGGTATATAATACCAGGTAATTTCTTTCTATCTGTTATAGTCTTGGATATGGTAAGATAGATATTCTGTGAAACTAGCCCCAGGGGTTGGATACCCAAAAATATAAAACCAATTTATAATATTCTTCATGTCTATAACTTCATTAAAAGAATAAATACCCATTCTTTTTCAATTGAAAGATATTTTGTTTATTACAAAGATTTACTAATTGGAAACTAGATTGGTTTGTATTAAATGATGCATTGAGTTTCTTAGTTATAAAGAAAATGCAAGTGTACCAGGAATTATAATTTTTTAAAATATTTTCTAGTACTATAGTATATATATTATGTAATATAAGATGAAGGAATCACATTCCTAATGTTACTTTAGGTTGAATATTCCACAGAAGCAAGGTTAAAAAGAAGGGTCAGAAACGAATCAGGCAGCCCCGCTTTGCATTTATGACCAAAAGTGAAGTTGATCATCTTGAAGATGGCTATAGATGGAGGAAATATGGCCAAAAAGCTGTTAAAAACAGTCCATTTCCAAGGTATGTTGGAATGAATTTAAATTTTATGAATTTCTAACGAATTATTTGAAGTATATTTAGTTATTATGTTCAAAATTCAACATTGAGAAAATTGTTTAATAAAACAAACCATTAGATGTACATGTACTTAACTAAATTACTCTTAATTCTACCTTATATACCTGAGTAATTATTTGTTATATGCCTTTTTGGAATAGTATGGAAGTTGTTTTCAAGAAATTTTTTTTTTTCTTCTTGGGGATTTTAGAAGTGATAGATTAAATATTTGGACAAAAATTGTTTGACTAAAGTGATGGTATAATAAATAGGATAGGGTAGTACTTTTCGTATATCTAATCCTAATTCCTGTCCTTATATCCTATTGAAACATATACATGTATCTTAACGAGTTATGTATATCTTGATTAATTTTATGAATTACTTTATTACAATCACCAATAAATAGGTATCAGATAATTATTCACAAAGATTTAAACAGATAAAATCATGTATTTCTTCATTTCAATTTGTATGATGTAGTCTGGGTTGATAAAAGTTGAAATAATTACTCATGATGAATATATATGACTTGTCAGGAGTTATTATCGTTGTACAAATACAAAGTGTACAGTAAAGAAAAGAGTGGAGAGATCCTCTGAAGATTCCTCAATTGTAATCACAACATATGAAGGACAACATTGTCACCATACAGTTGGATTTCCTAGAGGTGGACTTATCAATCACGAAGCATTTACATCTCAATTAACACCTTTACCCTCACAATTCTATCATCCATCCGGTGTTCAATACCCTCATGAATTAGTTCCTATGAGTAGCCCCGCTGCACCAGAATCACATACAATGCCTGGTGAAACCGGACCCGAACCTATTAGATTGCCAGAAACAAGTCAACCAGATGCTACACAACAACCAACTGATGAAGGATTGCTTGGAGATATTGTACCTCCTGGGATGCGAAGCAGATAATATAAAGGGTAATATATTCCGTTTCTTAATTTGCATTAATTTACATATATTTTTTTATTTCATCAATGACATAGTATTTGAACGTTACACGAGTGCGCCTACACAAGTGTAAGTGTATGTGTTTTATTTAAAAAGAA</genome_strand>
        <mrna_strand>GGCGTAAAATTCACTCTGTAACTATGGATGAAAACGATAAGCAGGTTGATAATGATCCATTACCTGGTGGTGGTGGTGGTGGTGCAGCGGAGTTCACCGGCGCTACTACTGAATCAAGCTGGTCACTCGGTGGTGGAGATGATGAATCGGATAATGTTTACTTCTTCGGTACTAGTAGTACTGATAGAGAGAGCAGTATATTAACCGAATTCGGCTGGAATTTTCAACCGCACGGAAATAGAGATGTTCGCGCCGGTGGTGACGGTAGTCGATTTGATCGGATCGATGAGGATTTGGCGGGAAATAGTACTACAACTACTGCTTCTGTTTCTGCTTCTGTTTCTATTACTGAACCGACGGTGACGGAGAAAATCACCGACGAACCTGTTTCATCTAGCTGTTCTGATGATCCCCCGGAGAAATCTACAGCTTCCGGTAGCTCCTCCGCCTCTCGACCGCCGTCCGATACAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAAGGTTAAAAAGAAGGGTCAGAAACGAATCAGGCAGCCCCGCTTTGCATTTATGACCAAAAGTGAAGTTGATCATCTTGAAGATGGCTATAGATGGAGGAAATATGGCCAAAAAGCTGTTAAAAACAGTCCATTTCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTATTATCGTTGTACAAATACAAAGTGTACAGTAAAGAAAAGAGTGGAGAGATCCTCTGAAGATTCCTCAATTGTAATCACAACATATGAAGGACAACATTGTCACCATACAGTTGGATTTCCTAGAGGTGGACTTATCAATCACGAAGCATTTACATCTCAATTAACACCTTTACCCTCACAATTCTATCATCCATCCGGTGTTCAATACCCTCATGAATTAGTTCCTATGAGTAGCCCCGCTGCACCAGAATCACATACAATGCCTGGTGAAACCGGACCCGAACCTATTAGATTGCCAGAAACAAGTCAACCAGATGCTACACAACAACCAACTGATGAAGGATTGCTTGGAGATATTGTACCTCCTGGGATGCGAAGCAGATAATATAAAGGGTAATATATTCCGTTTCTTAATTTGCATTAATTTACATATATTTTTTTATTTCATCAATGACATAGTATTTGAACGTTACACGAGTGCGCCTACACAAGTGTAAGTGTATGTGTTTTATTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720924" ref_strand="+" ref_description="SGN-E720924 [FC12BA10]">
      <seq>tttcaaatcccccaaaaaagtttctaattaaatattccaaactctttacgcgtttatcttccccttctctaaaaacccaagcttcaattttttctctctccgcgaaaaattcacactgtaactatggatgaaaacaataagcaggttgataatgacccattaccggggggggggggggggggtgcagcgaatttcaccggcgctactactgaatcaagctggtcactcgggggggaaaatgatgaatcgaataaggtttacttcttcggaactagtagtacggatagaaagagcagtatattgaccgaattcggcgggaattttcaaccgcacgaaaataaaaatgttccccccgggggggacggtattcaatttgatcggatcaatgaggatttggcgggaaatagaactacaactacggcttcggtttcggcttcggtttcaattacggaaccgacggtgacggaaaaaatcaccgacaaacctgtttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="5057" stop="3965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4757" g_stop="4265" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E720924" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4757" e_stop="4265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAATCCCCCAAAAAAGTTTCTAATTAAATATTCCAAACTCTTTACGCGTTTATCTTCTCCTTCTCTATAAACCCTAGCTTCAATTTTTTCTCTCTCCGCGTAAAATTCACTCTGTAACTATGGATGAAAACGATAAGCAGGTTGATAATGATCCATTACCTGGTGGTGGTGGTGGTGGTGCAGCGGAGTTCACCGGCGCTACTACTGAATCAAGCTGGTCACTCGGTGGTGGAGATGATGAATCGGATAATGTTTACTTCTTCGGTACTAGTAGTACTGATAGAGAGAGCAGTATATTAACCGAATTCGGCTGGAATTTTCAACCGCACGGAAATAGAGATGTTCGCGCCGGTGGTGACGGTAGTCGATTTGATCGGATCGATGAGGATTTGGCGGGAAATAGTACTACAACTACTGCTTCTGTTTCTGCTTCTGTTTCTATTACTGAACCGACGGTGACGGAGAAAATCACCGACGAACCTGTTTCAT</genome_strand>
        <mrna_strand>TTTCAAATCCCCCAAAAAAGTTTCTAATTAAATATTCCAAACTCTTTACGCGTTTATCTTCCCCTTCTCTAAAAACCCAAGCTTCAATTTTTTCTCTCTCCGCGAAAAATTCACACTGTAACTATGGATGAAAACAATAAGCAGGTTGATAATGACCCATTACCGGGGGGGGGGGGGGGGGGTGCAGCGAATTTCACCGGCGCTACTACTGAATCAAGCTGGTCACTCGGGGGGGAAAATGATGAATCGAATAAGGTTTACTTCTTCGGAACTAGTAGTACGGATAGAAAGAGCAGTATATTGACCGAATTCGGCGGGAATTTTCAACCGCACGAAAATAAAAATGTTCCCCCCGGGGGGGACGGTATTCAATTTGATCGGATCAATGAGGATTTGGCGGGAAATAGAACTACAACTACGGCTTCGGTTTCGGCTTCGGTTTCAATTACGGAACCGACGGTGACGGAAAAAATCACCGACAAACCTGTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374254" ref_strand="+" ref_description="SGN-E374254 [TUS-33-B10]">
      <seq>gaaacgaaggctttggtcgtgctgactattttcttgtaggaaaagatttccctgattatatagagtgccaagataaagttgatgaagcatatcgagaccagaagaaatggaccaaaatgtcgatcttaaacacagctggatcgttcaaatttagcagtgatcgaacaattcatcaatatgcaagagacatatggagaattgaacctgttgaattaccttaaatgttaagccagttaaagggtgaagccaattttttctccctgaggttctcccataccattataattagtaaatcttgtcaagagttgctactgaaatgttacaagttttgaatatttattgtcgattatatatatttgaaaataatgaagtttgttttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="21213" stop="20068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20913" g_stop="20810" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20809" i_stop="20656" i_length="154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20655" g_stop="20371" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="389" r_length="285" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="423"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E374254" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20913" e_stop="20810"/>
          <exon e_start="20655" e_stop="20371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACGAAGGCTTTGGTCGTGCTGACTATTTTCTTGTAGGAAAAGATTTCCCTGATTATATAGAGTGCCAAGATAAAGTTGATGAAGCATATCGAGACCAGAAGGTATACTTCTCGTAGTCTCATTTCACAATCTGTTTAACCATATCTTCTCTGTTTCATATTACTCGCGCACAAACAAACTTATTACTCATATTAGTACTTAGTATCCTTTTCGTGTAGTGTTTCTTGAAACATGTTGTCGTTGAAATGAATGCAGAAATGGACCAAAATGTCGATCTTAAACACAGCTGGATCGTTCAAATTTAGCAGTGATCGAACAATTCATCAATATGCAAGAGACATATGGAGAATTGAACCTGTTGAATTACCTTAAATGTTAAGCCAGTTAAAGGGTGAAGCCAATTTTTTCTCCCTGAGGTTCTCCCATACCATTATAATTAGTAAATCTTGTCAAGAGTTGCTACTGAAATGTTACAAGTTTTGAATATTTATTGTCGATTATATATATTTGAAAATAATGAAGTTTGTTTTGAACAACAAC</genome_strand>
        <mrna_strand>GAAACGAAGGCTTTGGTCGTGCTGACTATTTTCTTGTAGGAAAAGATTTCCCTGATTATATAGAGTGCCAAGATAAAGTTGATGAAGCATATCGAGACCAGAAG..........................................................................................................................................................AAATGGACCAAAATGTCGATCTTAAACACAGCTGGATCGTTCAAATTTAGCAGTGATCGAACAATTCATCAATATGCAAGAGACATATGGAGAATTGAACCTGTTGAATTACCTTAAATGTTAAGCCAGTTAAAGGGTGAAGCCAATTTTTTCTCCCTGAGGTTCTCCCATACCATTATAATTAGTAAATCTTGTCAAGAGTTGCTACTGAAATGTTACAAGTTTTGAATATTTATTGTCGATTATATATATTTGAAAATAATGAAGTTTGTTTTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578349" ref_strand="-" ref_description="SGN-E578349 [LE12CF08]">
      <seq>cagtgtagcggaagtgctaattcctggtagtgagctgtcccagcacattagtactgctggtatgnaggctagtggaaccagcaacatgaaattttcaatgaatggctgcctccttatcggaacgttagatggtgccaatgttgagataagagaggaagttggagaggacaatttcttccttttcggagctcaggctcatgaaattgctggtctgcgaaaggaaagagccgagggaaagtttatccccgacccaagatttgaagaagtaaaggcgttcattaggacaggcgtctttggcccctacaactatgaagaactcatgggatccttagaaggaaacgaaggctttggtcgtgctgactattttcttgtaggaaaagatttccctgattatatagagtgccaagataaagttgatgaagcatatcgagaccagaagaaatggaccaaaatgtcgatcttaaacacagctggatcgttcaaatttagcagtgatcgaacaattcatcaatatgcaagagacatatggagaattgaacctgttgaattcccttaaatgttaagccagttaaagggtgaagccaattttttctccctgaggttctcccataccattataattagtaaatcttgtcaagagttgctactgaaatgttacaagttttgaatatttattgtcgattatatatatttgaaaataatgaagtttgttttgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="21955" stop="20074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21655" g_stop="21605" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21604" i_stop="21511" i_length="94">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21510" g_stop="21324" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="238" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21323" i_stop="21011" i_length="313">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21010" g_stop="20810" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="439" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20809" i_stop="20656" i_length="154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20655" g_stop="20375" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="720" r_length="281" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E578349" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578349" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21655" e_stop="21605"/>
          <exon e_start="21510" e_stop="21324"/>
          <exon e_start="21010" e_stop="20810"/>
          <exon e_start="20655" e_stop="20375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGTAGCGGAAGTGCTAATTCCTGGTAGTGAGCTGTCCCAGCACATTAGGTACTTAATTTCGTTAGTTTTTGCATAAGGTCACAAATTTCTATAGAGCTAATATGTCGTATACCTGTCTGATATATCGATATTGTTTCAATAGTACTGCTGGTATGGAGGCTAGTGGAACCAGCAACATGAAATTTTCAATGAATGGCTGCCTCCTTATCGGAACGTTAGATGGTGCCAATGTTGAGATAAGAGAGGAAGTTGGAGAGGACAATTTCTTCCTTTTCGGAGCTCAGGCTCATGAAATTGCTGGTCTGCGAAAGGAAAGAGCCGAGGGAAAGGTAACATAAATTTTCATTCTTAATCATACAATTTACATTGCACAAGCACAAGCTCATAAAAAAACTACTCCCTCCTCCGTTTTCAATTTGTTTGTCTGGTTATGACTTGACACGAAGTTTCAGATAGAAAAAGAATACTTTTGAATCTTTAACGCCTCATATAGCTAAATTAACGATATATAGAATGAAAGTGCAAAAAAAGGGAAGAAGCATCATTTTTGGAACGAACTAAAAAGGAAAGTATAACAGATAAATTGTAGCTGCATTATTCTTATCGATGGAATGCATCTTACCCTATCTGTTCTTCACGTAGTTTATCCCCGACCCAAGATTTGAAGAAGTAAAGGCGTTCATTAGGACAGGCGTCTTTGGCCCCTACAACTATGAAGAACTCATGGGATCCTTAGAAGGAAACGAAGGCTTTGGTCGTGCTGACTATTTTCTTGTAGGAAAAGATTTCCCTGATTATATAGAGTGCCAAGATAAAGTTGATGAAGCATATCGAGACCAGAAGGTATACTTCTCGTAGTCTCATTTCACAATCTGTTTAACCATATCTTCTCTGTTTCATATTACTCGCGCACAAACAAACTTATTACTCATATTAGTACTTAGTATCCTTTTCGTGTAGTGTTTCTTGAAACATGTTGTCGTTGAAATGAATGCAGAAATGGACCAAAATGTCGATCTTAAACACAGCTGGATCGTTCAAATTTAGCAGTGATCGAACAATTCATCAATATGCAAGAGACATATGGAGAATTGAACCTGTTGAATTACCTTAAATGTTAAGCCAGTTAAAGGGTGAAGCCAATTTTTTCTCCCTGAGGTTCTCCCATACCATTATAATTAGTAAATCTTGTCAAGAGTTGCTACTGAAATGTTACAAGTTTTGAATATTTATTGTCGATTATATATATTTGAAAATAATGAAGTTTGTTTTGAACAA</genome_strand>
        <mrna_strand>CAGTGTAGCGGAAGTGCTAATTCCTGGTAGTGAGCTGTCCCAGCACATTAG..............................................................................................TACTGCTGGTATGNAGGCTAGTGGAACCAGCAACATGAAATTTTCAATGAATGGCTGCCTCCTTATCGGAACGTTAGATGGTGCCAATGTTGAGATAAGAGAGGAAGTTGGAGAGGACAATTTCTTCCTTTTCGGAGCTCAGGCTCATGAAATTGCTGGTCTGCGAAAGGAAAGAGCCGAGGGAAAG.........................................................................................................................................................................................................................................................................................................................TTTATCCCCGACCCAAGATTTGAAGAAGTAAAGGCGTTCATTAGGACAGGCGTCTTTGGCCCCTACAACTATGAAGAACTCATGGGATCCTTAGAAGGAAACGAAGGCTTTGGTCGTGCTGACTATTTTCTTGTAGGAAAAGATTTCCCTGATTATATAGAGTGCCAAGATAAAGTTGATGAAGCATATCGAGACCAGAAG..........................................................................................................................................................AAATGGACCAAAATGTCGATCTTAAACACAGCTGGATCGTTCAAATTTAGCAGTGATCGAACAATTCATCAATATGCAAGAGACATATGGAGAATTGAACCTGTTGAATTCCCTTAAATGTTAAGCCAGTTAAAGGGTGAAGCCAATTTTTTCTCCCTGAGGTTCTCCCATACCATTATAATTAGTAAATCTTGTCAAGAGTTGCTACTGAAATGTTACAAGTTTTGAATATTTATTGTCGATTATATATATTTGAAAATAATGAAGTTTGTTTTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331297" ref_strand="+" ref_description="SGN-E331297 [cTOD-6-F22]">
      <seq>gaagatggttaagtttctgtaacccagagttgagtgaaattataaccaaatggacaggatctgatgattggttggtaaacactgaaaaattggcagagcttcgaaagtttgctgataacgaagaactccagtctgagtggaggaaggcaaaaggaaataacaaaatgaagattgtctctctcattaaagaaaaaacaggatacgtggtcagtcccgatgcgatttttgatgttcagatcaagcgcattcacgagtataagaggcagctattaaatatattcggcattgtttatcgctacaagaagatgaaagaaatgagccctgaagaacgaaaagaaaagtttgttcctcgagtttgcatatttggaggaaaagcatttgctacatatgttcaggccaagagaattgtaaaatttatcactgatgtaggggcaacagtcaaccatgatcccgagattggtgatcttttgaaggttgtctttgttcctgattacaacgtcagtgtagcggaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="22890" stop="21341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22590" g_stop="22484" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22483" i_stop="22177" i_length="307">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22176" g_stop="21811" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="473" r_length="366" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21810" i_stop="21682" i_length="129">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21681" g_stop="21641" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="514" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E331297" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22590" e_stop="22484"/>
          <exon e_start="22176" e_stop="21811"/>
          <exon e_start="21681" e_stop="21641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGGTTAAGTTTCTGTAACCCAGAGTTGAGTGAAATTATAACCAAATGGACAGGATCTGATGATTGGTTGGTAAACACTGAAAAATTGGCAGAGCTTCGAAAGGTAAACGAGTTGTTTCTGACTTGTGATCTTATTGATTCCTAAACCGTCGTCAACAGCTTTCTTGAATGGATTATTTACTTTAGTCCTTCTATGTGGAAAGAGATCTTTATAAATATCATAAGAACATGTGAAATGTATGAGCAAGTAAAGGAAATAACTCTATTCTTTTACTAGCTCCGTTTCTATCTGTTTGTCCTATTTTGACTTGATAATCATAGTCCGGCCCTACTCCGGACTCCGTGCATAGTGGAAGCTTGGGTTGCCCTTTTACTTATACTGAACATACATGCATTTAACTGTCGAACAGTTTGCTGATAACGAAGAACTCCAGTCTGAGTGGAGGAAGGCAAAAGGAAATAACAAAATGAAGATTGTCTCTCTCATTAAAGAAAAAACAGGATACGTGGTCAGTCCCGATGCGATGTTTGATGTTCAGATCAAGCGCATTCACGAGTATAAGAGGCAGCTATTAAATATATTCGGCATTGTTTATCGCTACAAGAAGATGAAAGAAATGAGCCCTGAAGAACGAAAAGAAAAGTTTGTTCCTCGAGTTTGCATATTTGGAGGAAAAGCATTTGCTACATATGTTCAGGCCAAGAGAATTGTAAAATTTATCACTGATGTAGGGGCAACAGTCAACCATGATCCCGAGATTGGTGATCTTTTGAAGGTATGATTAGGACGAGTCAAAAACAATGTATGCTTGAACATTTTCGAAGATGTTACTAACCTCTGGTTATACCTGTTATAAGTCCAAGATGGTGCGATAGATTTGAAAAATTATCGGTTTGCATTTCAGGTTGTCTTTGTTCCTGATTACAACGTCAGTGTAGCGGAAGT</genome_strand>
        <mrna_strand>GAAGATGGTTAAGTTTCTGTAACCCAGAGTTGAGTGAAATTATAACCAAATGGACAGGATCTGATGATTGGTTGGTAAACACTGAAAAATTGGCAGAGCTTCGAAAG...................................................................................................................................................................................................................................................................................................................TTTGCTGATAACGAAGAACTCCAGTCTGAGTGGAGGAAGGCAAAAGGAAATAACAAAATGAAGATTGTCTCTCTCATTAAAGAAAAAACAGGATACGTGGTCAGTCCCGATGCGATTTTTGATGTTCAGATCAAGCGCATTCACGAGTATAAGAGGCAGCTATTAAATATATTCGGCATTGTTTATCGCTACAAGAAGATGAAAGAAATGAGCCCTGAAGAACGAAAAGAAAAGTTTGTTCCTCGAGTTTGCATATTTGGAGGAAAAGCATTTGCTACATATGTTCAGGCCAAGAGAATTGTAAAATTTATCACTGATGTAGGGGCAACAGTCAACCATGATCCCGAGATTGGTGATCTTTTGAAG.................................................................................................................................GTTGTCTTTGTTCCTGATTACAACGTCAGTGTAGCGGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343173" ref_strand="+" ref_description="SGN-E343173 [cTOF-17-H5]">
      <seq>aacggtcgcatacactaaccacactgttttacccgaggctctagagaaatggagcttcacacttcttggtgaactgcttcctcggcacgtggagatcatagcaatgatagatgaggagatcttgacttgttgcaagaaaagctaaaccaaatgaggattctggataatgttgaaatacctacttctgttttggagttacttatcaaagccgaagaaaatgctgctgatgtcgaaaaagcagcagaagaagaacaactagaagaaggtaaagatgaggaaactgaggctgtaaaagcagaaactacgaacgtagaggaggaaactgaggttgagaaggttgaggtcaaggatagtcaagcaaaaataaaacggatattcgggccacatgcaaatagaccacaggtggttcacatggcaaatctatgtgtagttagtggtcatgcagttaacggtgttgctgagattcatagtgaaatagttaaagatgaagttttcaatgaattttacaagttatggccagagaaattccaaaacaagacaaatggtgtgacaccaagaagatggttaagtttctgtaacccagagttgagtgaaattataaccaaatggacaggatctgatgattgggttggtaaacactgaaaaattggcagagcttcgaaagtttgctgataacgaagaactncagtctgagtggaggaaggcaaaggaaataacaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="23724" stop="21816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23424" g_stop="23307" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23306" i_stop="23127" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23126" g_stop="22735" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="510" r_length="392" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22734" i_stop="22637" i_length="98">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22636" g_stop="22484" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="664" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22483" i_stop="22177" i_length="307">
            <donor d_prob="0.909" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22176" g_stop="22116" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="723" r_length="59" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E343173" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23424" e_stop="23307"/>
          <exon e_start="23126" e_stop="22735"/>
          <exon e_start="22636" e_stop="22484"/>
          <exon e_start="22176" e_stop="22116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTCGCATACACTAACCACACTGTTTTACCCGAGGCTCTAGAGAAATGGAGCTTCACACTTCTTGGTGAACTGCTTCCTCGGCACGTGGAGATCATAGCAATGATAGATGAGGAGGTGAAAATTTTAAACTCCATTTTCATTTCTAGGATTAAGTTGATATTTTACATTTTGAACTTCTTGATCGAATTCGTTGCAGCTCAACATATTACTTTTGCTTCATTCTTTCTGAGAACTACTAAATGTGTATGCTTTTGCAGCTTTTGCTAACTATACTTACTGAATATGGTACTGAAGATCTTGACTTGTTGCAAGAAAAGCTAAACCAAATGAGGATTCTGGATAATGTTGAAATACCTACTTCTGTTTTGGAGTTACTTATCAAAGCCGAAGAAAATGCTGCTGATGTCGAAAAAGCAGCAGAAGAAGAACAACTAGAAGAAGGTAAAGATGAGGAAACTGAGGCTGTAAAAGCAGAAACTACGAACGTAGAGGAGGAAACTGAGGTTGAGAAGGTTGAGGTCAAGGATAGTCAAGCAAAAATAAAACGGATATTCGGGCCACATGCAAATAGACCACAGGTGGTTCACATGGCAAATCTATGTGTAGTTAGTGGTCATGCAGTTAACGGTGTTGCTGAGATTCATAGTGAAATAGTTAAAGATGAAGTTTTCAATGAATTTTACAAGGTATGAACATTATCACACGGCTAGAAGTGATAGATATCATTTTCACTTCTCCTCTTCAATGTTATTTCGATTGATCAAAACTATTTGTTCATCGACAGTTATGGCCAGAGAAATTCCAAAACAAGACAAATGGTGTGACACCAAGAAGATGGTTAAGTTTCTGTAACCCAGAGTTGAGTGAAATTATAACCAAATGGACAGGATCTGATGATT-GGTTGGTAAACACTGAAAAATTGGCAGAGCTTCGAAAGGTAAACGAGTTGTTTCTGACTTGTGATCTTATTGATTCCTAAACCGTCGTCAACAGCTTTCTTGAATGGATTATTTACTTTAGTCCTTCTATGTGGAAAGAGATCTTTATAAATATCATAAGAACATGTGAAATGTATGAGCAAGTAAAGGAAATAACTCTATTCTTTTACTAGCTCCGTTTCTATCTGTTTGTCCTATTTTGACTTGATAATCATAGTCCGGCCCTACTCCGGACTCCGTGCATAGTGGAAGCTTGGGTTGCCCTTTTACTTATACTGAACATACATGCATTTAACTGTCGAACAGTTTGCTGATAACGAAGAACTCCAGTCTGAGTGGAGGAAGGCAAAAGGAAATAACAAAATGA</genome_strand>
        <mrna_strand>AACGGTCGCATACACTAACCACACTGTTTTACCCGAGGCTCTAGAGAAATGGAGCTTCACACTTCTTGGTGAACTGCTTCCTCGGCACGTGGAGATCATAGCAATGATAGATGAGGAG....................................................................................................................................................................................ATCTTGACTTGTTGCAAGAAAAGCTAAACCAAATGAGGATTCTGGATAATGTTGAAATACCTACTTCTGTTTTGGAGTTACTTATCAAAGCCGAAGAAAATGCTGCTGATGTCGAAAAAGCAGCAGAAGAAGAACAACTAGAAGAAGGTAAAGATGAGGAAACTGAGGCTGTAAAAGCAGAAACTACGAACGTAGAGGAGGAAACTGAGGTTGAGAAGGTTGAGGTCAAGGATAGTCAAGCAAAAATAAAACGGATATTCGGGCCACATGCAAATAGACCACAGGTGGTTCACATGGCAAATCTATGTGTAGTTAGTGGTCATGCAGTTAACGGTGTTGCTGAGATTCATAGTGAAATAGTTAAAGATGAAGTTTTCAATGAATTTTACAAG..................................................................................................TTATGGCCAGAGAAATTCCAAAACAAGACAAATGGTGTGACACCAAGAAGATGGTTAAGTTTCTGTAACCCAGAGTTGAGTGAAATTATAACCAAATGGACAGGATCTGATGATTGGGTTGGTAAACACTGAAAAATTGGCAGAGCTTCGAAAG...................................................................................................................................................................................................................................................................................................................TTTGCTGATAACGAAGAACTNCAGTCTGAGTGGAGGAAGGC-AAAGGAAATAAC-AAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346121" ref_strand="+" ref_description="SGN-E346121 [cTOF-34-I23]">
      <seq>aacggtcgcatacactaaccacactgttttacccgaggctctagagaaatggagcttcacacttcttggtgaactgcttcctcggcacgtggagatcatagcaatgatagatgaggagatcttgacttgttgcaagaaaagctaaaccaaatgaggattctggataatgttgaaatacctacttctgttttggagttacttatcaaagccgaagaaaatgctgctgatgtcgaaaaagcagcagaagaagaacaactagaagaaggtaaagatgaggaaactgaggctgtaaaagcagaaactacgaacgtagaggaggaaactgaggttgagaaggttgaggtcaaggatagtcaagcaaaaataaaacggatattcgggccacatgcaaatagaccacaggtggttcacatggcaaatctatgtgtagttagtggtcatgcagttaacggtgttgctgagattcatagtgaaatagttaaagatgaagttttcaatgaattttacaagttatggccagagaaattccaaaacaagacaaatggtgtgacaccaagaagatggttaagtttctgtaacccagagttgagtgaaattataaccaaatggacaggatctgatgattggttggtaaacactgaaaaattggcagagcttcgaaagtttgctgataacgaagaactncagtctgagtggaggaaggcaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="23724" stop="21827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23424" g_stop="23307" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23306" i_stop="23127" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23126" g_stop="22735" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="510" r_length="392" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22734" i_stop="22637" i_length="98">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22636" g_stop="22484" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="663" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22483" i_stop="22177" i_length="307">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22176" g_stop="22127" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="713" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E346121" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23424" e_stop="23307"/>
          <exon e_start="23126" e_stop="22735"/>
          <exon e_start="22636" e_stop="22484"/>
          <exon e_start="22176" e_stop="22127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTCGCATACACTAACCACACTGTTTTACCCGAGGCTCTAGAGAAATGGAGCTTCACACTTCTTGGTGAACTGCTTCCTCGGCACGTGGAGATCATAGCAATGATAGATGAGGAGGTGAAAATTTTAAACTCCATTTTCATTTCTAGGATTAAGTTGATATTTTACATTTTGAACTTCTTGATCGAATTCGTTGCAGCTCAACATATTACTTTTGCTTCATTCTTTCTGAGAACTACTAAATGTGTATGCTTTTGCAGCTTTTGCTAACTATACTTACTGAATATGGTACTGAAGATCTTGACTTGTTGCAAGAAAAGCTAAACCAAATGAGGATTCTGGATAATGTTGAAATACCTACTTCTGTTTTGGAGTTACTTATCAAAGCCGAAGAAAATGCTGCTGATGTCGAAAAAGCAGCAGAAGAAGAACAACTAGAAGAAGGTAAAGATGAGGAAACTGAGGCTGTAAAAGCAGAAACTACGAACGTAGAGGAGGAAACTGAGGTTGAGAAGGTTGAGGTCAAGGATAGTCAAGCAAAAATAAAACGGATATTCGGGCCACATGCAAATAGACCACAGGTGGTTCACATGGCAAATCTATGTGTAGTTAGTGGTCATGCAGTTAACGGTGTTGCTGAGATTCATAGTGAAATAGTTAAAGATGAAGTTTTCAATGAATTTTACAAGGTATGAACATTATCACACGGCTAGAAGTGATAGATATCATTTTCACTTCTCCTCTTCAATGTTATTTCGATTGATCAAAACTATTTGTTCATCGACAGTTATGGCCAGAGAAATTCCAAAACAAGACAAATGGTGTGACACCAAGAAGATGGTTAAGTTTCTGTAACCCAGAGTTGAGTGAAATTATAACCAAATGGACAGGATCTGATGATTGGTTGGTAAACACTGAAAAATTGGCAGAGCTTCGAAAGGTAAACGAGTTGTTTCTGACTTGTGATCTTATTGATTCCTAAACCGTCGTCAACAGCTTTCTTGAATGGATTATTTACTTTAGTCCTTCTATGTGGAAAGAGATCTTTATAAATATCATAAGAACATGTGAAATGTATGAGCAAGTAAAGGAAATAACTCTATTCTTTTACTAGCTCCGTTTCTATCTGTTTGTCCTATTTTGACTTGATAATCATAGTCCGGCCCTACTCCGGACTCCGTGCATAGTGGAAGCTTGGGTTGCCCTTTTACTTATACTGAACATACATGCATTTAACTGTCGAACAGTTTGCTGATAACGAAGAACTCCAGTCTGAGTGGAGGAAGGCAAAAGGAAA</genome_strand>
        <mrna_strand>AACGGTCGCATACACTAACCACACTGTTTTACCCGAGGCTCTAGAGAAATGGAGCTTCACACTTCTTGGTGAACTGCTTCCTCGGCACGTGGAGATCATAGCAATGATAGATGAGGAG....................................................................................................................................................................................ATCTTGACTTGTTGCAAGAAAAGCTAAACCAAATGAGGATTCTGGATAATGTTGAAATACCTACTTCTGTTTTGGAGTTACTTATCAAAGCCGAAGAAAATGCTGCTGATGTCGAAAAAGCAGCAGAAGAAGAACAACTAGAAGAAGGTAAAGATGAGGAAACTGAGGCTGTAAAAGCAGAAACTACGAACGTAGAGGAGGAAACTGAGGTTGAGAAGGTTGAGGTCAAGGATAGTCAAGCAAAAATAAAACGGATATTCGGGCCACATGCAAATAGACCACAGGTGGTTCACATGGCAAATCTATGTGTAGTTAGTGGTCATGCAGTTAACGGTGTTGCTGAGATTCATAGTGAAATAGTTAAAGATGAAGTTTTCAATGAATTTTACAAG..................................................................................................TTATGGCCAGAGAAATTCCAAAACAAGACAAATGGTGTGACACCAAGAAGATGGTTAAGTTTCTGTAACCCAGAGTTGAGTGAAATTATAACCAAATGGACAGGATCTGATGATTGGTTGGTAAACACTGAAAAATTGGCAGAGCTTCGAAAG...................................................................................................................................................................................................................................................................................................................TTTGCTGATAACGAAGAACTNCAGTCTGAGTGGAGGAAGGCAAAAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327425" ref_strand="+" ref_description="SGN-E327425 [cTOC-19-O8]">
      <seq>aatgacactcatccaacactttgcataccagaacttttaaggatattgatagatgttaaaggtttgagctggaagcaggcatggggaattactcaaagaacggtcgcatacactaaccacactgttttacccgaggctctagagaaatggagcttcacacttcttggtgaactgcttcctcggcacgtggagatcatagcaatgatagatgaggagcttttgctaactatacttactgaatatggtactgaagatcttgacttgttgcaagaaaagctaaaccaaatgaggattctggataatgttgaaatacctacttctgctttggagttacttatcaaagccgaagaaaatgctgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="23965" stop="22717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23665" g_stop="23568" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23567" i_stop="23425" i_length="143">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23424" g_stop="23307" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="216" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23306" i_stop="23164" i_length="143">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23163" g_stop="23017" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="363" r_length="147" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E327425" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23665" e_stop="23568"/>
          <exon e_start="23424" e_stop="23307"/>
          <exon e_start="23163" e_stop="23017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGACACTCATCCAACACTTTGCATACCAGAACTTTTAAGGATATTGATAGATGTTAAAGGTTTGAGCTGGAAGCAGGCATGGGGAATTACTCAAAGGTTCTTTCTTCCGTTATTGCATCCGATAAATGTCTAATTTTTCTAGCAATTAGCTTTAAGATACAAGCGTAGATGATTCTTCCCTTTGTTTATTCATGTAAATACAGTAGCTCTACTCCTGTGACATTGTTATATCTTGGCAGAACGGTCGCATACACTAACCACACTGTTTTACCCGAGGCTCTAGAGAAATGGAGCTTCACACTTCTTGGTGAACTGCTTCCTCGGCACGTGGAGATCATAGCAATGATAGATGAGGAGGTGAAAATTTTAAACTCCATTTTCATTTCTAGGATTAAGTTGATATTTTACATTTTGAACTTCTTGATCGAATTCGTTGCAGCTCAACATATTACTTTTGCTTCATTCTTTCTGAGAACTACTAAATGTGTATGCTTTTGCAGCTTTTGCTAACTATACTTACTGAATATGGTACTGAAGATCTTGACTTGTTGCAAGAAAAGCTAAACCAAATGAGGATTCTGGATAATGTTGAAATACCTACTTCTGTTTTGGAGTTACTTATCAAAGCCGAAGAAAATGCTGCTGAT</genome_strand>
        <mrna_strand>AATGACACTCATCCAACACTTTGCATACCAGAACTTTTAAGGATATTGATAGATGTTAAAGGTTTGAGCTGGAAGCAGGCATGGGGAATTACTCAAAG...............................................................................................................................................AACGGTCGCATACACTAACCACACTGTTTTACCCGAGGCTCTAGAGAAATGGAGCTTCACACTTCTTGGTGAACTGCTTCCTCGGCACGTGGAGATCATAGCAATGATAGATGAGGAG...............................................................................................................................................CTTTTGCTAACTATACTTACTGAATATGGTACTGAAGATCTTGACTTGTTGCAAGAAAAGCTAAACCAAATGAGGATTCTGGATAATGTTGAAATACCTACTTCTGCTTTGGAGTTACTTATCAAAGCCGAAGAAAATGCTGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324907" ref_strand="+" ref_description="SGN-E324907 [cTOC-11-L22]">
      <seq>tagataccaatatggccttttcaaacagcttattacaaaagatggccaggaggaagttgctgaaaactggctcgagatgggaaatccatgggaaattgtcaggaatgatatttcgtatcccgtaaaattctatgggaaggtcattgaaggagctgatgggtcaaaggaatgggttggcggagaagatataactgctgttgcctatgatgtcccaataccaggatataaaacaaaaacaactatcaaccttcgactgtggtcaacaaagctagctgcagaagcttttgatctacatgcttttaacaacggagaccatgccaaagcatatgaggcacagaaaaaggctgagaagatttgctatgtcttatatccaggtgacgagtcacttgagggaaagacacttcggttaaagcaacaatacaccctatgttctgcttctcttcaggacattattgcacggttcgagaagagatcagggaatgcagtgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="24944" stop="23402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24644" g_stop="24569" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24568" i_stop="24455" i_length="114">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24454" g_stop="24179" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="352" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24178" i_stop="23840" i_length="339">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23839" g_stop="23702" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="490" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E324907" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24644" e_stop="24569"/>
          <exon e_start="24454" e_stop="24179"/>
          <exon e_start="23839" e_stop="23702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATACCAATATGGCCTTTTCAAACAGCTTATTACAAAAGATGGCCAGGAGGAAGTTGCTGAAAACTGGCTCGAGGTACGATATGTTGGAGGACCTTGATACTACTGACTGCACGTTTTTTCGTATTTTTCAATAGCTTTTATATGTTCTTTGCTATGCTCCAAAGTAATAGGACTATCATTTTCTCAGATGGGAAATCCATGGGAAATTGTCAGGAATGATATTTCGTATCCCGTAAAATTCTATGGGAAGGTCATTGAAGGAGCTGATGGGTCAAAGGAATGGGTTGGCGGAGAAGATATAACTGCTGTTGCCTATGATGTCCCAATACCAGGATATAAAACAAAAACAACTATCAACCTTCGACTGTGGTCAACAAAGCTAGCTGCAGAAGCTTTTGATCTACATGCTTTTAACAACGGAGACCATGCCAAAGCATATGAGGCACAGAAAAAGGCTGAGAAGGTGTACCTTTTTCTTTAGCTTACTTGAGAAACTATAAAATACTCTCTCCGTTTCAATTTGTTTGTCGTACTTCCCTTTTTAGTTTGTTTAAAAGGAAAGTCTCTTTTCTTTTTTTGGAAACTCGTTAATTCTAACCTTCCACATGACATGTTTTAAACCACAAGATTCAAAAGTTTTCTTTACTTTTCTTAAACTCCGTGCCAAGTCAAAACCAGACAAACAAAGTGAAACGGAGCAAGTACAATTCAAAAGCATGAATGCTGCGGAAATACTGCGAGATTCTGGTTATTAACCACAAGAAGAGCATTCCCTAATATTGTGTCTTGTATTTTGGATCAGATTTGCTATGTCTTATATCCAGGTGACGAGTCACTTGAGGGAAAGACACTTCGGTTAAAGCAACAATACACCCTATGTTCTGCTTCTCTTCAGGACATTATTGCACGGTTCGAGAAGAGATCAGGGAATGCAGTGAAC</genome_strand>
        <mrna_strand>TAGATACCAATATGGCCTTTTCAAACAGCTTATTACAAAAGATGGCCAGGAGGAAGTTGCTGAAAACTGGCTCGAG..................................................................................................................ATGGGAAATCCATGGGAAATTGTCAGGAATGATATTTCGTATCCCGTAAAATTCTATGGGAAGGTCATTGAAGGAGCTGATGGGTCAAAGGAATGGGTTGGCGGAGAAGATATAACTGCTGTTGCCTATGATGTCCCAATACCAGGATATAAAACAAAAACAACTATCAACCTTCGACTGTGGTCAACAAAGCTAGCTGCAGAAGCTTTTGATCTACATGCTTTTAACAACGGAGACCATGCCAAAGCATATGAGGCACAGAAAAAGGCTGAGAAG...................................................................................................................................................................................................................................................................................................................................................ATTTGCTATGTCTTATATCCAGGTGACGAGTCACTTGAGGGAAAGACACTTCGGTTAAAGCAACAATACACCCTATGTTCTGCTTCTCTTCAGGACATTATTGCACGGTTCGAGAAGAGATCAGGGAATGCAGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315774" ref_strand="+" ref_description="SGN-E315774 [cTOA-26-H13]">
      <seq>tgtatctaaaaattttagcattttgaaaaatttcagttcagagacatcatggcaacttttgctgtctctggattgaactcaatttcaagttttaataacaatttcagaagcaaaaactcaaatatttttttgagtagaaagaggagtttattgttcaatttaagaagaagaagaagaagtttctatgttagcaatgttgctagtgatcaaaagcagaagacaaaagattcttcctctgatgaaggatttacattagatgtttatcagccggactcaacgtctgttttatcaagtataaagtatcacgcagagttcacgccatcattttctcctgagaagtttgaacttcccaaggcgtactatgcaactgcagagagtgttcgagatatgctcattttaagttggaatgccacatatgaatactacgaaaagatgaatgtaaagcaggcatattacttgtctatggagtttcttcagggaagagctttactcaatgctattggtaacttggggctaaacggaccttatgcagatgctttaactaagctcggatacagtttagaggatgtagccaggcaggaaccagatgcagctttagggaatggaggcttangaagacttgcttcttgctttcttgactcaatggcgacgctaaactaccctgcatggggttatggacttagataccaatatggccttttcaaacagcttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="26804" stop="24311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26504" g_stop="26261" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26260" i_stop="25495" i_length="766">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25494" g_stop="25262" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="477" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25261" i_stop="25169" i_length="93">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25168" g_stop="25067" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="579" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25066" i_stop="24746" i_length="321">
            <donor d_prob="0.539" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24745" g_stop="24611" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="714" r_length="135" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E315774" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26504" e_stop="26261"/>
          <exon e_start="25494" e_stop="25262"/>
          <exon e_start="25168" e_stop="25067"/>
          <exon e_start="24745" e_stop="24611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATCTAAAAATTTTAGCATTTTGAAAAATTTCAGTTCAGAGACATCATGGCAACTTTTGCTGTCTCTGGATTGAACTCAATTTCAAGTTTTAATAACAATTTCAGAAGCAAAAACTCAAATATTTTTTTGAGTAGAAAGAGGAGTTTATTGTTCAATTTAAGAAGAAGAAGAAGAAGTTTCTATGTTAGCAATGTTGCTAGTGATCAAAAGCAGAAGACAAAAGATTCTTCCTCTGATGAAGGTATTGAAATAATTGTCCGTTTAATTTCTTTGTCTGATTTTAACTTGACACTAAGTTTAACAAAATACAGACTTGTTATGATATGAAATTGATATGTTGAATGTACTTTAGTGTTATTTAATCTTGTGGTGTTAAACGTCTCGCGTGGAAAGTAAAAAAATTAAAGAGTTGTTGAAAAAGGGGCGCGACATTATTTTTGAAAAAGACTAGAAATGGAAGTAAGATAAACAAATTGAATGTGTTCGCGTGTGTTAGAATCTCACATTGGTTAAGGAAACGAGTTGTTTCCTATAAGGTATTAGCAATGCTCACCTCGTTAATTAGCTTTTGAGATTGACTTAGGTCCTAGGTCTATTGATTTATTTAACATGGTGTCAGAAAGACAACGATAACATACCCAGTGCAATCCCACTAGCGGGGTCTGAGGAGGGATGTTGTGTACTTAGACCTAACTTCTATCTTGTGAATGTAGATAGATCGTTTTTGGTGAATCCTCGGCTCAAGACACATTTCTATTTGTAGTTTAACTAGTATTGATACCTTATGTTATAATGTCTACGCTCAAGATCTTCAGCCTGGACATGCCAGGGTGTAAGAGTCGCGCATTGGTAGAGAGAGTAGGTTGTGTTTGTTTAGAGAAGTAGAATTTGAAAATTTCGTATATAGTAGAGTTATCACTCCATTACGACTATTATTTGGACCCTTTGTTAATTGGAGATCAGCAAGTCCAATTGGACTTATTAATGTTTGTTTTTGATATTTTCAGGATTTACATTAGATGTTTATCAGCCGGACTCAACGTCTGTTTTATCAAGTATAAAGTATCACGCAGAGTTCACGCCATCATTTTCTCCTGAGAAGTTTGAACTTCCCAAGGCGTACTATGCAACTGCAGAGAGTGTTCGAGATATGCTCATTTTAAGTTGGAATGCCACATATGAATACTACGAAAAGATGAATGTAAAGCAGGCATATTACTTGTCTATGGAGTTTCTTCAGGTTAGATTAGCTAGGCTTCCCTTTTTATTTCGAGTATAACTACAGAGGTCGTCGTTGAAGTGAGTTGCTTTAATATGCTTTTGGTGCTTGCAGGGAAGAGCTTTACTCAATGCTATTGGTAACTTGGGGCTAAACGGACCTTATGCAGATGCTTTAACTAAGCTCGGATACAGTTTAGAGGATGTAGCCAGGCAGGTCGGATTTCTGTAAGAACTTACTTATTTCTGTTGACGGTTAGCCACTCAAAGTAGTTTTTTGTTTGATTGAGTCTGTCTTGTTTCAGTACAGCCCTATTTGACTATTACTAACACTTTGAAGGCGACTAGCTCCTGTTTCTATATTGCACAAGTTCTTGATTGATATGCTTTTCCAAAATGATTTAATAACATGTCAACGTAGTCAAACTATCCCGTTCTCATCATCACTGTTCTAACATTGTGATATATATCAATTGATTTCACGCGGGATAGTCGTCTACTGTAATTAGCTTAAGCTGTTTACTGTAATGACTGACAGGAACCAGATGCAGCTTTAGGGAATGGAGGCTTAGGAAGACTTGCTTCTTGCTTTCTTGACTCAATGGCGACGCTAAACTACCCTGCATGGGGTTATGGACTTAGATACCAATATGGCCTTTTCAAACAGCTTATT</genome_strand>
        <mrna_strand>TGTATCTAAAAATTTTAGCATTTTGAAAAATTTCAGTTCAGAGACATCATGGCAACTTTTGCTGTCTCTGGATTGAACTCAATTTCAAGTTTTAATAACAATTTCAGAAGCAAAAACTCAAATATTTTTTTGAGTAGAAAGAGGAGTTTATTGTTCAATTTAAGAAGAAGAAGAAGAAGTTTCTATGTTAGCAATGTTGCTAGTGATCAAAAGCAGAAGACAAAAGATTCTTCCTCTGATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTACATTAGATGTTTATCAGCCGGACTCAACGTCTGTTTTATCAAGTATAAAGTATCACGCAGAGTTCACGCCATCATTTTCTCCTGAGAAGTTTGAACTTCCCAAGGCGTACTATGCAACTGCAGAGAGTGTTCGAGATATGCTCATTTTAAGTTGGAATGCCACATATGAATACTACGAAAAGATGAATGTAAAGCAGGCATATTACTTGTCTATGGAGTTTCTTCAG.............................................................................................GGAAGAGCTTTACTCAATGCTATTGGTAACTTGGGGCTAAACGGACCTTATGCAGATGCTTTAACTAAGCTCGGATACAGTTTAGAGGATGTAGCCAGGCAG.................................................................................................................................................................................................................................................................................................................................GAACCAGATGCAGCTTTAGGGAATGGAGGCTTANGAAGACTTGCTTCTTGCTTTCTTGACTCAATGGCGACGCTAAACTACCCTGCATGGGGTTATGGACTTAGATACCAATATGGCCTTTTCAAACAGCTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547811" ref_strand="+" ref_description="SGN-E547811 [TUS-71-O4]">
      <seq>ctacttctgagaggaagaaattttctgtaaaattcagtatttcttcctctccccttaattaattaattccctcttcataaatagatcccatcttcaatcattcaaaaggtgaagtgaaaaatgtttggattcaggaaaaaagcagactctactactcctgatgaaaaaaatggaatgaaagctggtcggaggacatcctccgagccagttcttgtcacacctgatgacgatgattttggaacatcatcgtcatcaggtgggacaaggaacaaacataaaagtaagacagaggattttgataacatgtctgtgcaagaattggaagggtatgctgtagaccaagctaaggagacaacgagctcggtgaataactgtttgaagatagctgaggatattagacaggaaggtgctcagacactcgataccttgcataagcaaggcgagcaaattaatcgtactcatatgatggctgttgaaatggatcgcgatttgagcaagggtgaaaagttgttgaacaatcttggtggcatgttcgcgatgccttggaagccaaagaaaactcacgatattaaagggcctcgaacttcaaaagatgataatcataaagggaaaggtagtgcaagtgaaagggaaaaattaggtttgtcgaatggtaaaaaggggaaatcagcctcgagtacacctcctcctgaatcgatgaatgctatgcagcaaattgagtctgagaaggcgaagcaagatgatgcactttcggatttgagcaacatattgggtgatctaaaaggcatggctgttgacatgggatctgaacttgacagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="27089" stop="30154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27389" g_stop="27495" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27496" i_stop="28694" i_length="1199">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28695" g_stop="29087" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="498" r_length="390" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29088" i_stop="29356" i_length="269">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29357" g_stop="29450" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="592" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29451" i_stop="29532" i_length="82">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29533" g_stop="29660" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="720" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29661" i_stop="29752" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29753" g_stop="29850" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="818" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E547811" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27389" e_stop="27495"/>
          <exon e_start="28695" e_stop="29087"/>
          <exon e_start="29357" e_stop="29450"/>
          <exon e_start="29533" e_stop="29660"/>
          <exon e_start="29753" e_stop="29850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTCTGAGAGGAAGAAATTTTCTGTAAAATTCAGTATTTCTTCCTCTCCCCTTAATTAATTAATTCCCTCTTCATAAATAGATCACATCTTCAATCATTC-AAAGGTAATTAATTATTTCATTCCAACTTTTAAAAATTGTTTTCTTTAATCTTGGGTACATACCTTTTTCTCCTTTGTCATTTTGTTTTTGTTTTGTTGAGGTTGGCTTCTTGTCAGAGTACTTTTGACGTGGAACATAAATTTGTATATGTAAAAGTTGACAAAAATTGCAACAAGTCATAACTTTGATAATATAACGGGTGAAATGTTAAACTAGCGTTTAACCATAGATTTTAGATTAGATTTTGAAAAATTATATTTAATATTTGTTTGACCATGAAATTTGATGAGATTTTAAAATTTCAATCTTCAAATATTTTTCTCTTGATCTTGGTCATTTTTAGAAAAAAGAATTTTGTAAATGAATCTCCAAGAATGAAAAGTTGTAGTGGTTCACCTTCTAAAATTCATTTAGCTTTTTCAGTTATCATTAGCCTATAAAGTTTGATGTCAGTCAACTAATAGATATTATCTCAGAAAGTCAGGTTTCTATTTTTTATTTTTTTTGCTTGAGGTTGGTTTCTTGTTAGAATACTTTTGACGTGAAACACAAATTTGTAGTCATAATATTGAAATATAACTGGTGAAATGTTAAGTTAGCGTTTAACCATAAATTTTAAAAAATTATATTTAAATATTTGTTTGGCCATGAAATTTGATTAGATTTTAAACTTTCAGTCTTCAAATATTTTTCTGTTGATCTTGATCATTTTTAAAAATGAATTTTGTAAATGAAAAGTTATAGTGGTTCACCTTCTAATAAAATTCATTCAGTTTTTTCAGTTATTCGATTAGCCTAAAAGGGGTTGATGTCAGCTAACTAATACTCCCTCCGTTTCATAAAGAATGATCTGATTTGACTTGATACTGAGTTTTAGAATATAAAGAAGACTTCTGAATCTTGTGGTCCTAAATTAAAGTTGGGTCAAATGTACAAAACTGCTCTTTGATCTTGTGCTCTTAAACATGTCACGTGGAAAGGTGAAATTAAAATGTTGTCAAAAAGGAAAAGAAGTTATTCTTTTTTAACAGACTAAAAAGGAAAGTTCTTTTTTATTTCAGCAAAGAAAATGATGTTATGAGATAATAACTATTAGTCGACTAACCATGTTGTTATTGTTGTATGTATAGTTTGAAATATAGTAAATTTGCAAGCAAATTTGAGTGTTTTGGTTTATAATCTTGAAATTGTTTGCATATCAGGTGAAGTGAAAAATGTTTGGATTCAGGAAAAAAGCAGACTCTGCTACTCCTGATGAAAAAAATGTAATGAAAGCTGGTCGGAGGACATCCTCCGAGCCAGTTCTTGTCACACCTGATGACGATGATTTTGGAACATCATCGTCGTCATCAGGTGGGACAAGGAACAAACATAAAAGTAAGACAGAGGATTTTGATAACATGTCTGTGCAAGAATTGGAAGGGTATGCTGTAGACCAAGCTAAGGAGACAACGAGCTCGGTCAATAACTGTTTGAAGATAGCTGAGGATATTAGACAAGAAGGTGCTCAGACACTCGATACCTTGCATAAGCAAGGCGAGCAAATTAATCGTACTCATATGATGGCTGTTGAAATGGATCGCGATTTGAGCAAGGTATTGATCATTTTCAATTACTATTAATAGCACGGATAGTGTATACTCTTTATTTTATAGACGTAATGCATAAACAAACACTCCAATGTAACTTTTTATTATGCATATCTAGACACCTCAACTCGTCTCTATTGTGTCAGTTGAACACTGCAACTTTTACAAGTATAACATTTGGAAAGTAGCTTAATTTGCTTTGCTCATTCAATGTACAATCCCAAAAAAAAATGGTACAAAAGTTGACAATAATGATCATGTTTTCTGCACTTTAGGGTGAAAAGTTATTGAACAATCTTGGTGGCATGTTCGCGATGCCTTGGAAGCCAAAGAAAACTCACGATATTAAAGGGCCTCGAACTTCAAAAGGTTTCATGTTATTAGTATCTGCATTATCGATTGTGACTATGTAATCGATTTTACTGACTTTCATCTTCTCTGGTTTTCGTAGATGATAATCATAAAGGGAAAGGTAGTGCAAGTGAAAGGGAAAAATTAGGTTTGTCGAATGGTAAAAAGGGGAAATCAGCCTCGAGTACACCTCCTCCTGAATCGATGAATGCTATGCAGCAAATTGAGGTACATTTCGTATACACAACATTCAATCTAGCTATCTATTCGTGGCCTTGTAACTTGGAGTAAAAAAAAAAACTATGTTTATGTTTAAATAGTCTGAGAAGGCGAAGCAAGATGATGCACTTTCGGATTTGAGCAACATATTGGGTGATCTAAAAGGCATGGCTGTTGACATGGGATCTGAACTTGACAA</genome_strand>
        <mrna_strand>CTACTTCTGAGAGGAAGAAATTTTCTGTAAAATTCAGTATTTCTTCCTCTCCCCTTAATTAATTAATTCCCTCTTCATAAATAGATCCCATCTTCAATCATTCAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGTGAAAAATGTTTGGATTCAGGAAAAAAGCAGACTCTACTACTCCTGATGAAAAAAATGGAATGAAAGCTGGTCGGAGGACATCCTCCGAGCCAGTTCTTGTCACACCTGATGACGATGATTTTGGAACATCA---TCGTCATCAGGTGGGACAAGGAACAAACATAAAAGTAAGACAGAGGATTTTGATAACATGTCTGTGCAAGAATTGGAAGGGTATGCTGTAGACCAAGCTAAGGAGACAACGAGCTCGGTGAATAACTGTTTGAAGATAGCTGAGGATATTAGACAGGAAGGTGCTCAGACACTCGATACCTTGCATAAGCAAGGCGAGCAAATTAATCGTACTCATATGATGGCTGTTGAAATGGATCGCGATTTGAGCAAG.............................................................................................................................................................................................................................................................................GGTGAAAAGTTGTTGAACAATCTTGGTGGCATGTTCGCGATGCCTTGGAAGCCAAAGAAAACTCACGATATTAAAGGGCCTCGAACTTCAAAAG..................................................................................ATGATAATCATAAAGGGAAAGGTAGTGCAAGTGAAAGGGAAAAATTAGGTTTGTCGAATGGTAAAAAGGGGAAATCAGCCTCGAGTACACCTCCTCCTGAATCGATGAATGCTATGCAGCAAATTGAG............................................................................................TCTGAGAAGGCGAAGCAAGATGATGCACTTTCGGATTTGAGCAACATATTGGGTGATCTAAAAGGCATGGCTGTTGACATGGGATCTGAACTTGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360107" ref_strand="+" ref_description="SGN-E360107 [cLPP-14-E6]">
      <seq>ctacttctgagaggaagaaattttctgtaaaattcagtatttcttcctctccccttaattaattaattccctcttcataaatagatcccatcttcaatcattcaaaaggtgaagtgaaaaatgtttggattcaggaaaaaagcagactctactactcctgatgaaaaaaatggaatgaaagctggtcggaggacatcctccgagccagttcttgtcacacctgatgacgatgattttggaacatcatcgtcatcaggtgggacaaggaacaaacataaaagtaagacagaggattttgataacatgtctgtgcaagaattggaagggtatgctgtagaccaagctaaggagacaacgagctcggtgaataactgtttgaagatagctgaggatattagacaggaaggtgctcagacactcgataccttgcataagcaaggcgagcaaattaatcgtactcatatgatggctgttgaaatggatcgcgatttgagcaagggtgaaaagttgttgaacaatcttggtggcatgttcgcgatgccttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="27089" stop="29706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27389" g_stop="27495" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27496" i_stop="28694" i_length="1199">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28695" g_stop="29087" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="498" r_length="390" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29088" i_stop="29356" i_length="269">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29357" g_stop="29406" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="548" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E360107" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27389" e_stop="27495"/>
          <exon e_start="28695" e_stop="29087"/>
          <exon e_start="29357" e_stop="29406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTCTGAGAGGAAGAAATTTTCTGTAAAATTCAGTATTTCTTCCTCTCCCCTTAATTAATTAATTCCCTCTTCATAAATAGATCACATCTTCAATCATTC-AAAGGTAATTAATTATTTCATTCCAACTTTTAAAAATTGTTTTCTTTAATCTTGGGTACATACCTTTTTCTCCTTTGTCATTTTGTTTTTGTTTTGTTGAGGTTGGCTTCTTGTCAGAGTACTTTTGACGTGGAACATAAATTTGTATATGTAAAAGTTGACAAAAATTGCAACAAGTCATAACTTTGATAATATAACGGGTGAAATGTTAAACTAGCGTTTAACCATAGATTTTAGATTAGATTTTGAAAAATTATATTTAATATTTGTTTGACCATGAAATTTGATGAGATTTTAAAATTTCAATCTTCAAATATTTTTCTCTTGATCTTGGTCATTTTTAGAAAAAAGAATTTTGTAAATGAATCTCCAAGAATGAAAAGTTGTAGTGGTTCACCTTCTAAAATTCATTTAGCTTTTTCAGTTATCATTAGCCTATAAAGTTTGATGTCAGTCAACTAATAGATATTATCTCAGAAAGTCAGGTTTCTATTTTTTATTTTTTTTGCTTGAGGTTGGTTTCTTGTTAGAATACTTTTGACGTGAAACACAAATTTGTAGTCATAATATTGAAATATAACTGGTGAAATGTTAAGTTAGCGTTTAACCATAAATTTTAAAAAATTATATTTAAATATTTGTTTGGCCATGAAATTTGATTAGATTTTAAACTTTCAGTCTTCAAATATTTTTCTGTTGATCTTGATCATTTTTAAAAATGAATTTTGTAAATGAAAAGTTATAGTGGTTCACCTTCTAATAAAATTCATTCAGTTTTTTCAGTTATTCGATTAGCCTAAAAGGGGTTGATGTCAGCTAACTAATACTCCCTCCGTTTCATAAAGAATGATCTGATTTGACTTGATACTGAGTTTTAGAATATAAAGAAGACTTCTGAATCTTGTGGTCCTAAATTAAAGTTGGGTCAAATGTACAAAACTGCTCTTTGATCTTGTGCTCTTAAACATGTCACGTGGAAAGGTGAAATTAAAATGTTGTCAAAAAGGAAAAGAAGTTATTCTTTTTTAACAGACTAAAAAGGAAAGTTCTTTTTTATTTCAGCAAAGAAAATGATGTTATGAGATAATAACTATTAGTCGACTAACCATGTTGTTATTGTTGTATGTATAGTTTGAAATATAGTAAATTTGCAAGCAAATTTGAGTGTTTTGGTTTATAATCTTGAAATTGTTTGCATATCAGGTGAAGTGAAAAATGTTTGGATTCAGGAAAAAAGCAGACTCTGCTACTCCTGATGAAAAAAATGTAATGAAAGCTGGTCGGAGGACATCCTCCGAGCCAGTTCTTGTCACACCTGATGACGATGATTTTGGAACATCATCGTCGTCATCAGGTGGGACAAGGAACAAACATAAAAGTAAGACAGAGGATTTTGATAACATGTCTGTGCAAGAATTGGAAGGGTATGCTGTAGACCAAGCTAAGGAGACAACGAGCTCGGTCAATAACTGTTTGAAGATAGCTGAGGATATTAGACAAGAAGGTGCTCAGACACTCGATACCTTGCATAAGCAAGGCGAGCAAATTAATCGTACTCATATGATGGCTGTTGAAATGGATCGCGATTTGAGCAAGGTATTGATCATTTTCAATTACTATTAATAGCACGGATAGTGTATACTCTTTATTTTATAGACGTAATGCATAAACAAACACTCCAATGTAACTTTTTATTATGCATATCTAGACACCTCAACTCGTCTCTATTGTGTCAGTTGAACACTGCAACTTTTACAAGTATAACATTTGGAAAGTAGCTTAATTTGCTTTGCTCATTCAATGTACAATCCCAAAAAAAAATGGTACAAAAGTTGACAATAATGATCATGTTTTCTGCACTTTAGGGTGAAAAGTTATTGAACAATCTTGGTGGCATGTTCGCGATGCCTTGGAA</genome_strand>
        <mrna_strand>CTACTTCTGAGAGGAAGAAATTTTCTGTAAAATTCAGTATTTCTTCCTCTCCCCTTAATTAATTAATTCCCTCTTCATAAATAGATCCCATCTTCAATCATTCAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGTGAAAAATGTTTGGATTCAGGAAAAAAGCAGACTCTACTACTCCTGATGAAAAAAATGGAATGAAAGCTGGTCGGAGGACATCCTCCGAGCCAGTTCTTGTCACACCTGATGACGATGATTTTGGAACATCA---TCGTCATCAGGTGGGACAAGGAACAAACATAAAAGTAAGACAGAGGATTTTGATAACATGTCTGTGCAAGAATTGGAAGGGTATGCTGTAGACCAAGCTAAGGAGACAACGAGCTCGGTGAATAACTGTTTGAAGATAGCTGAGGATATTAGACAGGAAGGTGCTCAGACACTCGATACCTTGCATAAGCAAGGCGAGCAAATTAATCGTACTCATATGATGGCTGTTGAAATGGATCGCGATTTGAGCAAG.............................................................................................................................................................................................................................................................................GGTGAAAAGTTGTTGAACAATCTTGGTGGCATGTTCGCGATGCCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363115" ref_strand="+" ref_description="SGN-E363115 [cLPP-19-O23]">
      <seq>tacttctgagaggaagaaattttctgtaaaattcagtatttcttcctctccccttaattaattaattccctcttcataaatagatcccatcttcaatcattcaaaaggtgaagtgaaaaatgtttggattcaggaaaaaagcagactctactactcctgatgaaaaaaatggaatgaaagctggtcggaggacatcctccgagccagttcttgtcacacctgatgacgatgattttggaacatcatcgtcatcaggtgggacaaggaacaaacataaaagtaagacagaggattttgataacatgtctgtgcaagaattggaagggtatgctgtagaccaagctaaggagacaacgagctcggtgaataactgtttgaagatagctgaggatattagacaggaaggtgctcagacactcgataccttgcataagcaaggcgagcaaattaatcgtactcatatgatggctgttgaaatggatcgcgatttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="27090" stop="29383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27390" g_stop="27495" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27496" i_stop="28694" i_length="1199">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28695" g_stop="29083" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="493" r_length="386" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E363115" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27390" e_stop="27495"/>
          <exon e_start="28695" e_stop="29083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTCTGAGAGGAAGAAATTTTCTGTAAAATTCAGTATTTCTTCCTCTCCCCTTAATTAATTAATTCCCTCTTCATAAATAGATCACATCTTCAATCATTC-AAAGGTAATTAATTATTTCATTCCAACTTTTAAAAATTGTTTTCTTTAATCTTGGGTACATACCTTTTTCTCCTTTGTCATTTTGTTTTTGTTTTGTTGAGGTTGGCTTCTTGTCAGAGTACTTTTGACGTGGAACATAAATTTGTATATGTAAAAGTTGACAAAAATTGCAACAAGTCATAACTTTGATAATATAACGGGTGAAATGTTAAACTAGCGTTTAACCATAGATTTTAGATTAGATTTTGAAAAATTATATTTAATATTTGTTTGACCATGAAATTTGATGAGATTTTAAAATTTCAATCTTCAAATATTTTTCTCTTGATCTTGGTCATTTTTAGAAAAAAGAATTTTGTAAATGAATCTCCAAGAATGAAAAGTTGTAGTGGTTCACCTTCTAAAATTCATTTAGCTTTTTCAGTTATCATTAGCCTATAAAGTTTGATGTCAGTCAACTAATAGATATTATCTCAGAAAGTCAGGTTTCTATTTTTTATTTTTTTTGCTTGAGGTTGGTTTCTTGTTAGAATACTTTTGACGTGAAACACAAATTTGTAGTCATAATATTGAAATATAACTGGTGAAATGTTAAGTTAGCGTTTAACCATAAATTTTAAAAAATTATATTTAAATATTTGTTTGGCCATGAAATTTGATTAGATTTTAAACTTTCAGTCTTCAAATATTTTTCTGTTGATCTTGATCATTTTTAAAAATGAATTTTGTAAATGAAAAGTTATAGTGGTTCACCTTCTAATAAAATTCATTCAGTTTTTTCAGTTATTCGATTAGCCTAAAAGGGGTTGATGTCAGCTAACTAATACTCCCTCCGTTTCATAAAGAATGATCTGATTTGACTTGATACTGAGTTTTAGAATATAAAGAAGACTTCTGAATCTTGTGGTCCTAAATTAAAGTTGGGTCAAATGTACAAAACTGCTCTTTGATCTTGTGCTCTTAAACATGTCACGTGGAAAGGTGAAATTAAAATGTTGTCAAAAAGGAAAAGAAGTTATTCTTTTTTAACAGACTAAAAAGGAAAGTTCTTTTTTATTTCAGCAAAGAAAATGATGTTATGAGATAATAACTATTAGTCGACTAACCATGTTGTTATTGTTGTATGTATAGTTTGAAATATAGTAAATTTGCAAGCAAATTTGAGTGTTTTGGTTTATAATCTTGAAATTGTTTGCATATCAGGTGAAGTGAAAAATGTTTGGATTCAGGAAAAAAGCAGACTCTGCTACTCCTGATGAAAAAAATGTAATGAAAGCTGGTCGGAGGACATCCTCCGAGCCAGTTCTTGTCACACCTGATGACGATGATTTTGGAACATCATCGTCGTCATCAGGTGGGACAAGGAACAAACATAAAAGTAAGACAGAGGATTTTGATAACATGTCTGTGCAAGAATTGGAAGGGTATGCTGTAGACCAAGCTAAGGAGACAACGAGCTCGGTCAATAACTGTTTGAAGATAGCTGAGGATATTAGACAAGAAGGTGCTCAGACACTCGATACCTTGCATAAGCAAGGCGAGCAAATTAATCGTACTCATATGATGGCTGTTGAAATGGATCGCGATTTGAG</genome_strand>
        <mrna_strand>TACTTCTGAGAGGAAGAAATTTTCTGTAAAATTCAGTATTTCTTCCTCTCCCCTTAATTAATTAATTCCCTCTTCATAAATAGATCCCATCTTCAATCATTCAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGTGAAAAATGTTTGGATTCAGGAAAAAAGCAGACTCTACTACTCCTGATGAAAAAAATGGAATGAAAGCTGGTCGGAGGACATCCTCCGAGCCAGTTCTTGTCACACCTGATGACGATGATTTTGGAACATCA---TCGTCATCAGGTGGGACAAGGAACAAACATAAAAGTAAGACAGAGGATTTTGATAACATGTCTGTGCAAGAATTGGAAGGGTATGCTGTAGACCAAGCTAAGGAGACAACGAGCTCGGTGAATAACTGTTTGAAGATAGCTGAGGATATTAGACAGGAAGGTGCTCAGACACTCGATACCTTGCATAAGCAAGGCGAGCAAATTAATCGTACTCATATGATGGCTGTTGAAATGGATCGCGATTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363180" ref_strand="+" ref_description="SGN-E363180 [cLPP-19-O11]">
      <seq>aaatagatcccatcttcaatcattcaaaaggtgaagcgaaaaatgtttggattcacgaaaaaagcagactctactactcctgatgaaaaaaatggaatgaaagctggtcggaggacatcctccgagccagttcttgtcacacctgatgacgatgattttggaacatcatcttcatctggtgggacaagggacaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="27167" stop="29140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27467" g_stop="27495" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27496" i_stop="28694" i_length="1199">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28695" g_stop="28864" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="197" r_length="167" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E363180" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>199</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27467" e_stop="27495"/>
          <exon e_start="28695" e_stop="28864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAGATCACATCTTCAATCATTC-AAAGGTAATTAATTATTTCATTCCAACTTTTAAAAATTGTTTTCTTTAATCTTGGGTACATACCTTTTTCTCCTTTGTCATTTTGTTTTTGTTTTGTTGAGGTTGGCTTCTTGTCAGAGTACTTTTGACGTGGAACATAAATTTGTATATGTAAAAGTTGACAAAAATTGCAACAAGTCATAACTTTGATAATATAACGGGTGAAATGTTAAACTAGCGTTTAACCATAGATTTTAGATTAGATTTTGAAAAATTATATTTAATATTTGTTTGACCATGAAATTTGATGAGATTTTAAAATTTCAATCTTCAAATATTTTTCTCTTGATCTTGGTCATTTTTAGAAAAAAGAATTTTGTAAATGAATCTCCAAGAATGAAAAGTTGTAGTGGTTCACCTTCTAAAATTCATTTAGCTTTTTCAGTTATCATTAGCCTATAAAGTTTGATGTCAGTCAACTAATAGATATTATCTCAGAAAGTCAGGTTTCTATTTTTTATTTTTTTTGCTTGAGGTTGGTTTCTTGTTAGAATACTTTTGACGTGAAACACAAATTTGTAGTCATAATATTGAAATATAACTGGTGAAATGTTAAGTTAGCGTTTAACCATAAATTTTAAAAAATTATATTTAAATATTTGTTTGGCCATGAAATTTGATTAGATTTTAAACTTTCAGTCTTCAAATATTTTTCTGTTGATCTTGATCATTTTTAAAAATGAATTTTGTAAATGAAAAGTTATAGTGGTTCACCTTCTAATAAAATTCATTCAGTTTTTTCAGTTATTCGATTAGCCTAAAAGGGGTTGATGTCAGCTAACTAATACTCCCTCCGTTTCATAAAGAATGATCTGATTTGACTTGATACTGAGTTTTAGAATATAAAGAAGACTTCTGAATCTTGTGGTCCTAAATTAAAGTTGGGTCAAATGTACAAAACTGCTCTTTGATCTTGTGCTCTTAAACATGTCACGTGGAAAGGTGAAATTAAAATGTTGTCAAAAAGGAAAAGAAGTTATTCTTTTTTAACAGACTAAAAAGGAAAGTTCTTTTTTATTTCAGCAAAGAAAATGATGTTATGAGATAATAACTATTAGTCGACTAACCATGTTGTTATTGTTGTATGTATAGTTTGAAATATAGTAAATTTGCAAGCAAATTTGAGTGTTTTGGTTTATAATCTTGAAATTGTTTGCATATCAGGTGAAGTGAAAAATGTTTGGATTCAGGAAAAAAGCAGACTCTGCTACTCCTGATGAAAAAAATGTAATGAAAGCTGGTCGGAGGACATCCTCCGAGCCAGTTCTTGTCACACCTGATGACGATGATTTTGGAACATCATCGTCGTCATCAGGTGGGACAAGGAACAAACA</genome_strand>
        <mrna_strand>AAATAGATCCCATCTTCAATCATTCAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCGAAAAATGTTTGGATTCACGAAAAAAGCAGACTCTACTACTCCTGATGAAAAAAATGGAATGAAAGCTGGTCGGAGGACATCCTCCGAGCCAGTTCTTGTCACACCTGATGACGATGATTTTGGAACATCATC-T--TCATCTGGTGGGACAAGGGACAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547810" ref_strand="+" ref_description="SGN-E547810 [TUS-71-O4](-)">
      <seq>aattaggtttgtcgaatggtaaaaaggggaaatcagcctcgagtacacctcctcctgaatcgatgaatgctatgcagcaaattgagtctgagaaggcgaagcaagatgatgcactttcggatttgagcaacatattgggtgatctaaaaggcatggctgttgacatgggatctgaacttgacaagcaaaacaaagctatagatgatcttgacaaagatgttgatgaattaaactctagagttaaaggtgcaaatcgacgtgcacgtcaaatagtagggaagtgaaagaagaggacacttgttttttcctatgttgctccgacttttccaaaactgttggtgtactcatgtcagatcctccgaaatacactacttttggaagttcgcgacatttttaaagaatctgagcatgcttcgacatcagatttactgaaagttttttggcattttggctttaaggtctattggaagttttggttgcttcttttttacttttttcttttacttcaattttttgacattaagattaccttttctaatttttaaattttactggactgtttcattgtttattgttcatttgtaattataaaataatcaaataggcctttttatgattagtttttcgatgatttgatcgatttgattctgtttatttttagtttttatgctattgttatataaacatgctaaagtaaatcgaatcaataaaatattctatattgatcgaaaaaaaaaaaaaaaaaaaaaaaaactcgaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="29275" stop="31238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29575" g_stop="29660" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29661" i_stop="29752" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29753" g_stop="29850" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="184" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29851" i_stop="30385" i_length="535">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30386" g_stop="30937" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="728" r_length="544" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="729" polyA_stop="754"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E547810" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29575" e_stop="29660"/>
          <exon e_start="29753" e_stop="29850"/>
          <exon e_start="30386" e_stop="30937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGGTTTGTCGAATGGTAAAAAGGGGAAATCAGCCTCGAGTACACCTCCTCCTGAATCGATGAATGCTATGCAGCAAATTGAGGTACATTTCGTATACACAACATTCAATCTAGCTATCTATTCGTGGCCTTGTAACTTGGAGTAAAAAAAAAAACTATGTTTATGTTTAAATAGTCTGAGAAGGCGAAGCAAGATGATGCACTTTCGGATTTGAGCAACATATTGGGTGATCTAAAAGGCATGGCTGTTGACATGGGATCTGAACTTGACAAGTAAGTTTCATCAAACATAATGTTCTTCTTCTTTGTTACTATGTTGTTACGTTTCATTTTGAACACTTTCGACAATATGTAACTTAGTTTTCTGAAGTTAAAATGTGTTTTTTTCAAATGGGAAGTCATGAAAGTGATTGTTAACTTTCATCTGTGATGAACATCTTTAGCCTTGATATCTTATTTTCTTGTTGTTGTTTCTACTTCCCCGCTACCTCTTTTTCATCATTAGCTAAGTCGGGGGTCTATCAGAAACAACCTCTCTACTTTCTCAACGTAGGGGTAAGGTCACGTGCACTCAACACTCCTTAGACTCCACGGCTCCACCTTCAGGATTACACTGGTTTTGTTGTTGACTTGTTGATAATGAACATGTAGCTCAAAACCGCAGTGATCAATGATCATACATGTAAATGTTTATACATTGACAATGTATAAAGAAGTTTTATGTTGTTAGTGTAATTTAACATGTTATAGTACGTCTGTTTTTCATTTATTATCGATAACACATGTTGTTGAAATGTGATAAATGCAGGCAAAACAAAGCTATAGATGATCTTGACAAAGATGTTGATGAATTAAACTCTAGAGTTAAAGGTGCAAATCGACGTGCACGTCAAATAGTAGGGAAGTGAAAGAAGAGGACACTTGTTTTTTCCTATGTTGCTCTGACTTTTCCAAAATTGTTGATGTACTCGTGTCAGATCCTTCGAAATACACTACTTTT-G-A-TTCGCGACATTTTTGAAGAGTCTGAGCATCATAACTTGCTTCAACATCAGATTTACTG--AGTTTTTTGGCATTTTGGCTTTAAGGTCTATTGGAAGTTTTGGTTGCTTCTTTTTAACTTTTTTTCTTTTAATTTCATTTTTTTGTTATTAAGATTACCTTTTCTAATTTTTAAGTTTTACTGGATTATTTCATTGTTTATTGTTCATTTGTAATTATAAAATAAAAAAATAAAAAAGCCTTTTTATAATTAGTTTTTCGATGATTTGATCGGTTTGATTCTGTTTATTTTTAGTTTAT-TACTATCGTTATATAAACATGCTAAAGTAAATCAAATCAGTAAAATATTCTATATTGATCA</genome_strand>
        <mrna_strand>AATTAGGTTTGTCGAATGGTAAAAAGGGGAAATCAGCCTCGAGTACACCTCCTCCTGAATCGATGAATGCTATGCAGCAAATTGAG............................................................................................TCTGAGAAGGCGAAGCAAGATGATGCACTTTCGGATTTGAGCAACATATTGGGTGATCTAAAAGGCATGGCTGTTGACATGGGATCTGAACTTGACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAACAAAGCTATAGATGATCTTGACAAAGATGTTGATGAATTAAACTCTAGAGTTAAAGGTGCAAATCGACGTGCACGTCAAATAGTAGGGAAGTGAAAGAAGAGGACACTTGTTTTTTCCTATGTTGCTCCGACTTTTCCAAAACTGTTGGTGTACTCATGTCAGATCCTCCGAAATACACTACTTTTGGAAGTTCGCGACATTTTTAAAGAATCTGAG---C---A--TGCTTCGACATCAGATTTACTGAAAGTTTTTTGGCATTTTGGCTTTAAGGTCTATTGGAAGTTTTGGTTGCTTCTTTTTTAC-TTTTTTCTTTT-ACTTCAATTTTTTGACATTAAGATTACCTTTTCTAATTTTTAAATTTTACTGGACTGTTTCATTGTTTATTGTTCATTTGTAATTATAAAATAATCAAAT----AGGCCTTTTTATGATTAGTTTTTCGATGATTTGATCGATTTGATTCTGTTTATTTTTAGTTTTTATGCTATTGTTATATAAACATGCTAAAGTAAATCGAATCAATAAAATATTCTATATTGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713252" ref_strand="+" ref_description="SGN-E713252 [FB08AE10]">
      <seq>aatcgccattaaaacacctcttttttccatcttcttcgagttgaagaatggcgcgtaaatgtatagtgctagcttgtttgatcttcctttccttctctgcaatggcttcaattcccaattcgacgaaaaaatatgatcaagaagatcatcttcattcaccttctgtaatttgctatcaattccaaagaattcgccactgtccaccatttcctccacagctttcgtcgccatcatcatcttcatcactggatgaaattgacccaagatttggtgcggagaaaagatcaatcccttctggtcctaatcctctgcacaactgaaaaaaaaaacagagcatcaccattttcatggaaagaaagttcatttcttcaattatttagttacccttttcatatttcagaagaaaactcgaagaagaaggagaagtagaaatcgatttgcttatgtaatcaaagttctattttttttttttggccaaaattatgtacaaagtttaaagttttaagttcttgttttgccggcattaaaaaattatttagttacggttttataacaaagttcgaaaattgatgggtattcaaatcttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="31729" stop="32921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32029" g_stop="32621" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E713252" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32029" e_stop="32621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGCCATTAAAACACCTCTTTTTTCCATCTTCTTCGAGTTGAAGAATGGCGCGTAAATGTATAGTGCTAGCTTGTTTGATCTTCCTTTCCTTCTCTGCAATGGCTTCAATTCCCAATTCGACGAAAAAATATGATCAAGAAGATCATCTTCATTCACCTTCTGTAATTTGCTATCAATTCCAAAGAATTCGCCACTGTCCACCATTTCCTCCACAGCTTTCGTCGCCATTATCATCTTCATCACTGGATGAAATTGAACCAAGATTTGGTGCGGAGAAAAGATCAATCCCTTCTGGTCCTAATCCTCTGCACAACTGAAAAAAAAAAAAACAGAGCACCACCATTTTCATGGAAAGAAAGTTCATTTCTTCGATTATTTAGTTACCCTTTTCATATTTCAGAAGAAAACTCGAAGAAGAAGGAGAAGTAGAAATCGATTTGCTTATGTAATCAGAGTTCTA--TTTTTTTTTT-GTCAATATTATGTACTAAGTTTTAAGTTTTTAGTTCTTGTTTTGTCTGCATTAAGAGATTATTTAGTTACGATTTTATAACAAAGTTCGAGAATTGATGTGTATTCGAATCATAATAATA</genome_strand>
        <mrna_strand>AATCGCCATTAAAACACCTCTTTTTTCCATCTTCTTCGAGTTGAAGAATGGCGCGTAAATGTATAGTGCTAGCTTGTTTGATCTTCCTTTCCTTCTCTGCAATGGCTTCAATTCCCAATTCGACGAAAAAATATGATCAAGAAGATCATCTTCATTCACCTTCTGTAATTTGCTATCAATTCCAAAGAATTCGCCACTGTCCACCATTTCCTCCACAGCTTTCGTCGCCATCATCATCTTCATCACTGGATGAAATTGACCCAAGATTTGGTGCGGAGAAAAGATCAATCCCTTCTGGTCCTAATCCTCTGCACAACTG---AAAAAAAAAACAGAGCATCACCATTTTCATGGAAAGAAAGTTCATTTCTTCAATTATTTAGTTACCCTTTTCATATTTCAGAAGAAAACTCGAAGAAGAAGGAGAAGTAGAAATCGATTTGCTTATGTAATCAAAGTTCTATTTTTTTTTTTTGGCCAAAATTATGTACAAAGTTTAAAGTTTTAAGTTCTTGTTTTGCCGGCATTAAAAAATTATTTAGTTACGGTTTTATAACAAAGTTCGAAAATTGATGGGTATTCAAATCTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337621" ref_strand="+" ref_description="SGN-E337621 [cTOE-11-B10]">
      <seq>aactttttatctgatctttgaaatagctttttaatataaggctccattacacaaagaaagaatggatatgcttaagcaaataagggtgaagtttaccggtataggagaagaagagagaggtggcagcagcagagatagaacaataccaccacagaaaactcaactttttaaagaaacaaaaagaatacctagctggttgcacagacagtttccaaggacaatgagtcgtgattatgattccagtgatagcattgattatccagctgcggtggcagcagctgcatttgctataacatcaattgaagaaaagagtgaatacgaccacagaaggacaaatagtggaggtgataaacctttgacaaagatcaaaagtaaaggagaggatattgccaagaaacctgaaaagctctcagatgaagcttcaaaatcaagttcaaaaattccatataaaagtgagccaatagggtcaacaacaatcaatccggagccagttaaatctgtgccatctattaagaagaaaccaacttttggagataccaaacctgaaagtgaagttgttggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="44240" stop="45981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44540" g_stop="44623" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44624" i_stop="44703" i_length="80">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.345" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44704" g_stop="44792" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="173" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44793" i_stop="44874" i_length="82">
            <donor d_prob="0.748" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44875" g_stop="45114" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="413" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45115" i_stop="45529" i_length="415">
            <donor d_prob="0.671" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45530" g_stop="45681" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="565" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E337621" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44540" e_stop="44623"/>
          <exon e_start="44704" e_stop="44792"/>
          <exon e_start="44875" e_stop="45114"/>
          <exon e_start="45530" e_stop="45681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTTATCTGATCTTTGAAATAGCTTTTTAATATAAGGCTCCATTACACAAAGAAAGAATGGATATGCTTAAGCAAATAAGGTAATGAACGTCAATTCAAATTCTAGCATCATAAAGAAAAACTTTTTTGATCGTGTTGCAATTAACACCAACTGTACTAGGGTGAAGTTTACCGGTATAGGAGAAGAAGAGAGAGGTGGCAGCAGCAGAGATAGAACAATACCACCACAGAAAACTCAACTTTTTAAAGGTAGTAACTCAGACTCGAAATCTAAATCATAGGAAAACAAGAACATCCTAAAAGATTTTTTTTGTTTTTGTTTTTTTGACAGAAACAAAAAGAATACCTAGCTGGTTGCACAGACAGTTTCCAAGGACAATGAGTCGTGATTATGATTCCAGTGATAGCATTGATTATCCAGCTGCGGTGGCAGCAGCTGCATTTGCTATAACATCAATTGAAGAAAAGAGTGAATACGACCACAGAAGGACAAATAGTGGAGGTGATAAACCTTTGACAAAGATCAAAAGTAAAGGAGAGGATATTGCCAAGAAACCTGAAAAGCTCTCAGGTAGGAAGAAATTTCCGATGATTCCTCGTCTTTCTAAGTTCATAATTAAGAATCATAATAAACAAGCTATAAATGGAATGAGGATTAGAGGACGTAGTTGCAAACCATGATGTCAGGGGCTCAAATCCCTCCTCTCCTACAACTGGTCCAAAATGAAAATACTTTACCCCCCCGGGGAGTAGGAAACCCGACCCTTCTCCTCTCAAATACACATCTTCGTGATTTCTATCCAAAGGCCACTTAGACATTGAATAATTGAATTACTAAATTGCGAGATGAATAAACAATAAAATCAAGAAACAGGTTCAACAAATAGTTCAAACCGTTGGATTTCTTAGTAAATAATGAGGACTAGTCAATAGTCATTTTATTTATCATCCTAACATGTTTCGCATTTTCGTCTTACTTGTAACAGATGAAGCTTCAAAATCAAGTTCAAAAATTCCATATAAAAGTGAGCCAATAGGGTCAACAACAATCAATCCGGAGCCAGTTAAATCTGTGCCATCTATTAAGAAGAAACCAACTTTTGGAGATACCAAACCTGAAAGTGAAGTTGTTGGAAAG</genome_strand>
        <mrna_strand>AACTTTTTATCTGATCTTTGAAATAGCTTTTTAATATAAGGCTCCATTACACAAAGAAAGAATGGATATGCTTAAGCAAATAAG................................................................................GGTGAAGTTTACCGGTATAGGAGAAGAAGAGAGAGGTGGCAGCAGCAGAGATAGAACAATACCACCACAGAAAACTCAACTTTTTAAAG..................................................................................AAACAAAAAGAATACCTAGCTGGTTGCACAGACAGTTTCCAAGGACAATGAGTCGTGATTATGATTCCAGTGATAGCATTGATTATCCAGCTGCGGTGGCAGCAGCTGCATTTGCTATAACATCAATTGAAGAAAAGAGTGAATACGACCACAGAAGGACAAATAGTGGAGGTGATAAACCTTTGACAAAGATCAAAAGTAAAGGAGAGGATATTGCCAAGAAACCTGAAAAGCTCTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGCTTCAAAATCAAGTTCAAAAATTCCATATAAAAGTGAGCCAATAGGGTCAACAACAATCAATCCGGAGCCAGTTAAATCTGTGCCATCTATTAAGAAGAAACCAACTTTTGGAGATACCAAACCTGAAAGTGAAGTTGTTGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712891" ref_strand="+" ref_description="SGN-E712891 [FB06AD12]">
      <seq>gttacgaactgcaggagggctcatcgtataggctcttcggggtctggcactagtggtcctaatacaaatgatacccctacaatgcaaaggacccagttttctcttcagaagtcccttgatttctttttccggttgacatccaaatttccgttggttgttgcacttcttctggttgttatatttgtgataccttccagtgtgggcatcttgattctatacctggtgatcacaattctttttggacttccatctttgctagttatatacttcgcttatcctgctctagattggctggtgagagagattacttcttgaagtatttctgttcaatttgtttgaggattattttttagagtttcgaggatgtaatacatagtactgtttgcactagtaaacaatgtctcatcagtttgatcttagttttcatatcaagagatggtgtaaatagttgttggtttttgtggaggttaaggttaattttccttcaaagtttgtatctgctattgttaatggatgaatgatatcgcggggttgctctttctactataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="47655" stop="46507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47355" g_stop="46795" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E712891" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47355" e_stop="46795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACGAACTGCAGGAGGGCTCATCGTATAGGATCTTCGGGGTCTGGCACTAGTGGTCCTAATACAAATGATACCCCTACAATGCAAAGGACCCAGTTTTCTCTTCAGAAGTCCCTTGATTTCTTTTTCCTGTTGACATCCAAATTTCCGTTGGTTGTTGCACTTCTTCTGGTTGTTATATTTGTGATACCTTCCAGTGTGGGCATCTTGATTCTATACCTGGTGATCACAATTCTTTTTGGACTTCCATCTTTGCTAGTTATATACTTCGCTTATCCTGCTCTAGATTGGCTGGTGAGAGAGATTACTTCTTGAAGTATTTCTGTTCAATTTGTTTGAGGATTACTTTTTAGAGTTTCGAGGATGTAATACATAGTACTGTTTGCACTAGTAAACAATGTCTCATCAGTTTGATCTTAGTTTTCATATCAAGAGATGGTGTAAATAGTTGTTGGTTTTTGTGGAGGTTAAGGTTAATTTTCCTTCAAAGTTTGTATCTGCTATTGTTAATGGATGAATGATATCGCGGGGTTGCTCTTTCTACTATAACTGTATTGAGAT</genome_strand>
        <mrna_strand>GTTACGAACTGCAGGAGGGCTCATCGTATAGGCTCTTCGGGGTCTGGCACTAGTGGTCCTAATACAAATGATACCCCTACAATGCAAAGGACCCAGTTTTCTCTTCAGAAGTCCCTTGATTTCTTTTTCCGGTTGACATCCAAATTTCCGTTGGTTGTTGCACTTCTTCTGGTTGTTATATTTGTGATACCTTCCAGTGTGGGCATCTTGATTCTATACCTGGTGATCACAATTCTTTTTGGACTTCCATCTTTGCTAGTTATATACTTCGCTTATCCTGCTCTAGATTGGCTGGTGAGAGAGATTACTTCTTGAAGTATTTCTGTTCAATTTGTTTGAGGATTATTTTTTAGAGTTTCGAGGATGTAATACATAGTACTGTTTGCACTAGTAAACAATGTCTCATCAGTTTGATCTTAGTTTTCATATCAAGAGATGGTGTAAATAGTTGTTGGTTTTTGTGGAGGTTAAGGTTAATTTTCCTTCAAAGTTTGTATCTGCTATTGTTAATGGATGAATGATATCGCGGGGTTGCTCTTTCTACTATAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330067" ref_strand="-" ref_description="SGN-E330067 [cTOD-5-A4]">
      <seq>gatcaattaatgtgctcctccccttgtacttcaaataccaggaacgcgagttctgttacgaactgcaggagggctcatcgtataggatcttcggggtctggcactagtggtcctaatacaaatgatacccctacaatgcaaaggacccagttttctcttcagaagtcccttgatttctttttcctgttgacatccaaatttccgttggttgttgcacttcttctggttgttatatttgtgataccttccagtgtgggcatcttgattctatacctggtgatcacaattctttttggacttccatctttgctagttatatacttcgcttatcctgctctagattggctggtgagagagattacttcttgaagtatttctgttcaatttgtttgaggattactttttagagtttcgaggatgtaatacatagtactgtttgcactagtaaacaatgtctcatcagtttgatcttagttttcatatcaagagatggtgtaaatagttgttggtttttgtggaggttaaggttaattttccttcaaagtttgtatctgctattgttaatggatgaatgatatcgcggggttgctctttctactaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="47709" stop="46507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47409" g_stop="46811" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="600" polyA_stop="620"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E330067" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330067" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47409" e_stop="46811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAATTAATGTGCTCCTCCCCTTGTACTTCAAATACCAGGAACGCGAGTTCTGTTACGAACTGCAGGAGGGCTCATCGTATAGGATCTTCGGGGTCTGGCACTAGTGGTCCTAATACAAATGATACCCCTACAATGCAAAGGACCCAGTTTTCTCTTCAGAAGTCCCTTGATTTCTTTTTCCTGTTGACATCCAAATTTCCGTTGGTTGTTGCACTTCTTCTGGTTGTTATATTTGTGATACCTTCCAGTGTGGGCATCTTGATTCTATACCTGGTGATCACAATTCTTTTTGGACTTCCATCTTTGCTAGTTATATACTTCGCTTATCCTGCTCTAGATTGGCTGGTGAGAGAGATTACTTCTTGAAGTATTTCTGTTCAATTTGTTTGAGGATTACTTTTTAGAGTTTCGAGGATGTAATACATAGTACTGTTTGCACTAGTAAACAATGTCTCATCAGTTTGATCTTAGTTTTCATATCAAGAGATGGTGTAAATAGTTGTTGGTTTTTGTGGAGGTTAAGGTTAATTTTCCTTCAAAGTTTGTATCTGCTATTGTTAATGGATGAATGATATCGCGGGGTTGCTCTTTCTACT</genome_strand>
        <mrna_strand>GATCAATTAATGTGCTCCTCCCCTTGTACTTCAAATACCAGGAACGCGAGTTCTGTTACGAACTGCAGGAGGGCTCATCGTATAGGATCTTCGGGGTCTGGCACTAGTGGTCCTAATACAAATGATACCCCTACAATGCAAAGGACCCAGTTTTCTCTTCAGAAGTCCCTTGATTTCTTTTTCCTGTTGACATCCAAATTTCCGTTGGTTGTTGCACTTCTTCTGGTTGTTATATTTGTGATACCTTCCAGTGTGGGCATCTTGATTCTATACCTGGTGATCACAATTCTTTTTGGACTTCCATCTTTGCTAGTTATATACTTCGCTTATCCTGCTCTAGATTGGCTGGTGAGAGAGATTACTTCTTGAAGTATTTCTGTTCAATTTGTTTGAGGATTACTTTTTAGAGTTTCGAGGATGTAATACATAGTACTGTTTGCACTAGTAAACAATGTCTCATCAGTTTGATCTTAGTTTTCATATCAAGAGATGGTGTAAATAGTTGTTGGTTTTTGTGGAGGTTAAGGTTAATTTTCCTTCAAAGTTTGTATCTGCTATTGTTAATGGATGAATGATATCGCGGGGTTGCTCTTTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344698" ref_strand="+" ref_description="SGN-E344698 [cTOF-14-P4]">
      <seq>ttgaagtatttctgttcaatttgtttgaggattactttttagagtttcgaggatgtaatacatagtactgtttgcactagtaaacaatgtctcatcagtttgatcttagttttcatatcaagagatggtgtaaatagttgttggtttttgtggaggttaaggttaattttccttcaaagtttgtatctgctattgttaatggatgaatgatatcgcggggttgctctttctactaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="47344" stop="46507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47044" g_stop="46811" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="235" polyA_stop="250"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E344698" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47044" e_stop="46811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGTATTTCTGTTCAATTTGTTTGAGGATTACTTTTTAGAGTTTCGAGGATGTAATACATAGTACTGTTTGCACTAGTAAACAATGTCTCATCAGTTTGATCTTAGTTTTCATATCAAGAGATGGTGTAAATAGTTGTTGGTTTTTGTGGAGGTTAAGGTTAATTTTCCTTCAAAGTTTGTATCTGCTATTGTTAATGGATGAATGATATCGCGGGGTTGCTCTTTCTACT</genome_strand>
        <mrna_strand>TTGAAGTATTTCTGTTCAATTTGTTTGAGGATTACTTTTTAGAGTTTCGAGGATGTAATACATAGTACTGTTTGCACTAGTAAACAATGTCTCATCAGTTTGATCTTAGTTTTCATATCAAGAGATGGTGTAAATAGTTGTTGGTTTTTGTGGAGGTTAAGGTTAATTTTCCTTCAAAGTTTGTATCTGCTATTGTTAATGGATGAATGATATCGCGGGGTTGCTCTTTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213137" ref_strand="-" ref_description="SGN-E213137 [cLEC-72-K23]">
      <seq>agtggtcttaatacaaatgatacccttccaatgcaaaggacccagttttctcttcagaagtcccttgatttctttttcctgttgacatccaaatttccgttggttgttgcacttcttctggttgttatatttgtgataccttccagtgtgggcatcttgattctatacctggtgatcacaattctttttggacttccatctttgctagttatatacttcgcttatcctgctctagattggctggtgagagagattacttcttgaagtatttctgttcaatttgtttgaggattactttttagagtttcgaggatgtaatacatagtactgtttgcactagtaaacaatgtctcatcagtttgatcttagttttcatatcaagagatggtgtaaatagttgttggtttttgtggaggttaaggttaattttccttcaaagtttgtatctgctattgttaatggatgaatgatatcgcggggttgctctttctaaaaaaaaaaaaaaaaaactcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="47604" stop="46507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47304" g_stop="46813" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="493" polyA_stop="510"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E213137" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213137" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47304" e_stop="46813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGTCCTAATACAAATGATACCCCTACAATGCAAAGGACCCAGTTTTCTCTTCAGAAGTCCCTTGATTTCTTTTTCCTGTTGACATCCAAATTTCCGTTGGTTGTTGCACTTCTTCTGGTTGTTATATTTGTGATACCTTCCAGTGTGGGCATCTTGATTCTATACCTGGTGATCACAATTCTTTTTGGACTTCCATCTTTGCTAGTTATATACTTCGCTTATCCTGCTCTAGATTGGCTGGTGAGAGAGATTACTTCTTGAAGTATTTCTGTTCAATTTGTTTGAGGATTACTTTTTAGAGTTTCGAGGATGTAATACATAGTACTGTTTGCACTAGTAAACAATGTCTCATCAGTTTGATCTTAGTTTTCATATCAAGAGATGGTGTAAATAGTTGTTGGTTTTTGTGGAGGTTAAGGTTAATTTTCCTTCAAAGTTTGTATCTGCTATTGTTAATGGATGAATGATATCGCGGGGTTGCTCTTTCTA</genome_strand>
        <mrna_strand>AGTGGTCTTAATACAAATGATACCCTTCCAATGCAAAGGACCCAGTTTTCTCTTCAGAAGTCCCTTGATTTCTTTTTCCTGTTGACATCCAAATTTCCGTTGGTTGTTGCACTTCTTCTGGTTGTTATATTTGTGATACCTTCCAGTGTGGGCATCTTGATTCTATACCTGGTGATCACAATTCTTTTTGGACTTCCATCTTTGCTAGTTATATACTTCGCTTATCCTGCTCTAGATTGGCTGGTGAGAGAGATTACTTCTTGAAGTATTTCTGTTCAATTTGTTTGAGGATTACTTTTTAGAGTTTCGAGGATGTAATACATAGTACTGTTTGCACTAGTAAACAATGTCTCATCAGTTTGATCTTAGTTTTCATATCAAGAGATGGTGTAAATAGTTGTTGGTTTTTGTGGAGGTTAAGGTTAATTTTCCTTCAAAGTTTGTATCTGCTATTGTTAATGGATGAATGATATCGCGGGGTTGCTCTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747211" ref_strand="+" ref_description="SGN-E747211 [GI|12231305]">
      <seq>tttttttttttccacaaaagccaacaactatttacaccatctcttgatatgaaaactaagatcaaactgatgagacattgtttactagtgcaaacagtactatgtattacatcctcgaaactctaaaaagtaatcctcaaacaaattgaacagaaatacttcaagaagtaatctctctcaccagccaatctagagcagataagcgaagtatataactagcaaagatggaagtccaaaaagaattggtatcaccaggtatagaatcaagatgcccacactggaaggtatcacaaatataacaaccagaagaagtgcaacaaccaacggaaatttggatgtcaacaggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="46591" stop="47536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46881" g_stop="47238" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E747211" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46881" e_stop="47238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTTAACCTCCACAAAAACCAACAACTATTTACACCATCTCTTGATATGAAAACTAAGATCAAACTGATGAGACATTGTTTACTAGTGCAAACAGTACTATGTATTACATCCTCGAAACTCTAAAAAGTAATCCTCAAACAAATTGAACAGAAATACTTCAAGAAGTAATCTCTCTCACCAGCCAATCTAGAGCAGGATAAGCGAAGTATATAACTAGCAAAGATGGAAGTCCAAAAAGAATTGTGATCACCAGGTATAGAATCAAGATGCCCACACTGGAAGGTATCACAAATATAACAACCAGAAGAAGTGCAACAACCAACGGAAATTTGGATGTCAACAGGAAAAAGAAATC</genome_strand>
        <mrna_strand>TTTTTTTTTTTCCACAAAAGCCAACAACTATTTACACCATCTCTTGATATGAAAACTAAGATCAAACTGATGAGACATTGTTTACTAGTGCAAACAGTACTATGTATTACATCCTCGAAACTCTAAAAAGTAATCCTCAAACAAATTGAACAGAAATACTTCAAGAAGTAATCTCTCTCACCAGCCAATCTAGAGCA-GATAAGCGAAGTATATAACTAGCAAAGATGGAAGTCCAAAAAGAATTGGTATCACCAGGTATAGAATCAAGATGCCCACACTGGAAGGTATCACAAATATAACAACCAGAAGAAGTGCAACAACCAACGGAAATTTGGATGTCAACAGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264515" ref_strand="+" ref_description="SGN-E264515 [cLEG-67-C12]">
      <seq>aaatttctgaaaaaccatcttttttattcaagttcaaaagaggtgctttaaattgaacaaagtgttttctgtcagatccttattgtactagttgttctgtctctatgtggaaatccatttcaaatgtcatcacaagctttggccagaagaaggattctgctacgcccagtcaaacttgtcacgagtactcagatgacgatgatatccgctctaatgacagcactgaggaaggactagaatgcccaatatgttgggaatcatttaacattgttgagaatgttccctatgtattgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="50081" stop="47345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49781" g_stop="49751" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49750" i_stop="47909" i_length="1842">
            <donor d_prob="0.916" d_score="0.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47908" g_stop="47645" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="295" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E264515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49781" e_stop="49751"/>
          <exon e_start="47908" e_stop="47645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCTGAAAAACCATCTTTTTTATTCAAGTAAGTTCATCTTTTCTTGAATCTGCCAAAAAATAATAATCTCGTTTTGATGGTTGTCTGATTTCAAGATTGGATTTTTATGAACTTTGTGGATTTCTTGTGTTTTGGAATTTTTATTACATGTGAGATGGATGAATCTGTTTGTGGGGTTGAATTTTTTTTTGGGTATTTTGTGATTGATGTAATGTTTGTTGATTTGCCAAGTATTGTGGAAATTGGAATTCAAGATTCTAGCTTTAACTCCTTTTTGGGGGTTTGAAGCTTTGTTAGTGTGGTTTCTCTTATTTTATGTTTTTAATTATAGTTTATAAAGGAAAAGTTTTGATTTTTGAGATTCTGCTGGTGTGCCTGTAATGCTATGTATTTTGTTAATGACTGTTTGAATCAGTTCTTGTCATTGGATTAGTAAATTTTGAGAGTGTGAAAAAAAATTAGAGTGGTTTAAGGTGTCAAATTTAGGCTTTGGTCCCGGAAGGACATGGTTTTAGATCCCACAGCTGTCATCAATAACAAGAAGACATATTGTAATCCCACAAGTAGGGTTTGGGGAGGGCGGTGTATGCACAGGTTTACCCCTACGACTGTCATCATTTGCAAAATTAATGTGCAGTTGTACAAAATTTGATATGATTAGAAATGATCACGTTTAGCTGAATATGCAAGTAGCAAACATAAAGAGTGAAATGAAAGAAGGTTATTTGAGATGATTAGTCATGTCCAACATCGACCTCTTAATGCATTGGTGTACAGTTGTGTAACTATAGTGATGGAATGTGCTAAAGGGGATAGGTAATCGTAAAAATAAGTAAATTTTGGTCTAATTTTTTTTGCTAGGAATCTGTGTGTTGTTAGAGATTTGTATGCTAGTAGGAAATGTAGAGAATCTAATTGTACATATCGAATTTCTTGGGTCTGAATGAAGTTCTATTATTGTGAGGAGACATATAATCGACCCTAACTAACTCGCGATAATGACATCATCATTGTTGTTATAATAAAATGAGCTAGAGTGGCCAAGGTCGTTTTTTCCTCCTTTAAGAGTGTCTGTTCGAGACTGGACTGATTAAAGGAGTACCCAAGAGCTGAATCTTTAGTCTCAAGATATCTCCTTTTGAGTGGAAGGATATATTCTAAGTACATAAGGAGTACGTTGATGCATGCATATCCGGTAGATTATCACAATTTATGGCAACAATGGTGAAACTAGAACTGAATTATGATTACAAATTATAAGGTAGAAATTTAGAGAGCGGTGGTGCTCATTCTTATATGAAGACATGATATATGAAATTAAAATAGGATGACTGAATGGAGGATTGCTACGGGAGTGTTATATGGTTAGATGATATCTACCGCAATGAAAGGCAAGTCCTATAGAATGTTGTGAACCCATGATGTTTTATAGGAGTTAACCACTAAAATATCCGTTGGACTATTGTTGTAAGGATTTGAATTTTAAGATGAATGGTTGAATGTGCAGTCAAAAGTATGATTTGACTAGTACCAAAGGTGCAGAAACCAGTAAAAATCTCCTTTTCTGCCTATATAGCAGTCGACAGCCCCATCGGAAGGGTTCGGTTGGAGGAGTAAGTTTGACCTTTGTTACAATTTTCACCTCTTAGACGCAAAATAGAGTCCATTTCAGGTATTCTTTTTGGATGGGTTCTAGCAATTTAGAGAATATCAAAAATAATTTCTTCTTGCTGATACATAATGATATGAAGCTATTCATTATTTCTATTGAAAACTATCTAAGGGGGCTGTGGTTGCAGTTTATGAGGCACACTAACATCAGCTCTTCTCTTTCTGATAAATGTCACATTTTTAAATTCTATATTTCAGGTTCAAAAGAGGTGCTTTAAATTGAACAAAGTGTTTTCTGTCAGATCCTTATTGTACTAGTTGTTCTGTCTCTATGTGGAAATCCATTTCAAATGTCATCACAAGCTTTGGCCAGAAGAAGGATTCTGCTACGCCCAGTCAAACTTGTCACGAGTACTCAGATGACGATGATATCCGCTCTAATGACAGCACTGAGGAAGGACTAGAATGCCCAATATGTTGGGAATCATTTAACATTGTTGAGAATGTTCCCTATGTATTGTG</genome_strand>
        <mrna_strand>AAATTTCTGAAAAACCATCTTTTTTATTCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAAGAGGTGCTTTAAATTGAACAAAGTGTTTTCTGTCAGATCCTTATTGTACTAGTTGTTCTGTCTCTATGTGGAAATCCATTTCAAATGTCATCACAAGCTTTGGCCAGAAGAAGGATTCTGCTACGCCCAGTCAAACTTGTCACGAGTACTCAGATGACGATGATATCCGCTCTAATGACAGCACTGAGGAAGGACTAGAATGCCCAATATGTTGGGAATCATTTAACATTGTTGAGAATGTTCCCTATGTATTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712233" ref_strand="-" ref_description="SGN-E712233 [FB04BB06]">
      <seq>tttttttttttcactgaaatacacacaacttacatacatattacataaacccaactccggcgccggcgctggtgcttttgcttcttcagcaaccagtgcggcggccggagccttatcgccaccgtactggtggagataagtttgggccttctcaacgtactgtccaattccttgagtttcgtctaattttccgtatttctgtgcagcgtcgagcacatcggctgctgcttcagccacttttttgttatcgattttttcggaatctttgttgaattgactctgagcagcatctgctaacactttagcactggcgaaaagctctgttgtcgaacctgattcctcgccggcttttttggaatcgtcgccggctccggcgctcttagccaacgatgacagaaaattcatgatttttttgtgaagaagaagattgaattgtgtatatgagagatgatttgaatagtaaggaggctgtatatatagagtctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="58814" stop="60103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58920" g_stop="58927" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58928" i_stop="59113" i_length="186">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59114" g_stop="59170" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="65" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59171" i_stop="59378" i_length="208">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59379" g_stop="59803" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="488" r_length="423" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E712233" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712233" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58920" e_stop="58927"/>
          <exon e_start="59114" e_stop="59170"/>
          <exon e_start="59379" e_stop="59803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTTTATATCCATGTACATATCTTAAAATACACTAAATATAAGTAATAATTTTTTTATAGTCATAACATTTTCAATCAAAACGCATAATATATATGAGATATTTTTCTCTCAAAAATAAGATTAATCTTTGTTCTTGACTTATTTCCTAGAAGCAACGAAGATAACACTAATAAATTCAAACAAACACAAATTTCACTGAAATACACACAACTTACATACATATTACATAAACCCAACTCCGGCGCCGGCGCCGGCAGTGAACAGTGGCAAATTAAGAAAAAAAAAACTGAAATATAACATCAGCCATAATTTTAAAAAAAGTTAATTAAACTCTAATTACTTCTTGCTTAAGAAATCACCAGCCATCTTAAGATAATCAGCTCCTTCACTCTTTTTTTCCTCCTCCTTATCTCCTTCAACAACCGGCTCCGGCGCCGGATCCGATTCCGATGCAGGCGCTGGTGCTTTTGCTTCTTCAGCAACCGGTGCGGCGGCCGGAGCCTTATCGCCACCGTACTGGTGGAGATAAGTTTGGGCCTTCTCAACGTACTGTCCAATTCCTTGAGTTTCGTCTAATTTTCCGTATTTCTGTGCAGCGTCGAGCACATCGGCTGCTGCTTCAGCCACTTTTTTGTTATCGATTTTTTCGGAATCTTTGTTGAATTGACTCTGAGCAGCATCTGCTAACACTTTAGCACTGGCGAAAAGCTCTGTTGTCGAACCTGATTCCTCGCCGGCTTTTTGGGAATCGTCGCCGGCTCCGGCGCTCTTAGCCAACGATGACAGAAAATTCATGATTTTTTTGTGAAGAAGAAGATTGAATTGTGTATATGAGAGATATGATTTGAATAGTAAGGAGGCTGTATATATAGAGTCTCTT</genome_strand>
        <mrna_strand>TTTTTTTT..........................................................................................................................................................................................TTTCACTGAAATACACACAACTTACATACATATTACATAAACCCAACTCCGGCGCCG................................................................................................................................................................................................................GCGCTGGTGCTTTTGCTTCTTCAGCAACCAGTGCGGCGGCCGGAGCCTTATCGCCACCGTACTGGTGGAGATAAGTTTGGGCCTTCTCAACGTACTGTCCAATTCCTTGAGTTTCGTCTAATTTTCCGTATTTCTGTGCAGCGTCGAGCACATCGGCTGCTGCTTCAGCCACTTTTTTGTTATCGATTTTTTCGGAATCTTTGTTGAATTGACTCTGAGCAGCATCTGCTAACACTTTAGCACTGGCGAAAAGCTCTGTTGTCGAACCTGATTCCTCGCCGGCTTTTTTGGAATCGTCGCCGGCTCCGGCGCTCTTAGCCAACGATGACAGAAAATTCATGATTTTTTTGTGAAGAAGAAGATTGAATTGTGTATATGAGAG--ATGATTTGAATAGTAAGGAGGCTGTATATATAGAGTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733173" ref_strand="-" ref_description="SGN-E733173 [LB04AF10]">
      <seq>tttttttttttaagataacactaataaattcaaacaaacacaaatttcactgaaatacacacaacttacatacatattacataaacccaactccggcgccggtgcaggcgctggtgcttttgcttcttcagcaaccagtgcggcggccggagccttatcgccaccgtactggtggagataagtttgggccttctcaacgtactgtccaattccttgagtttcgtctaattttccgtatttctgtgcagcgtcgagcacatcggctgctgcttcagccacttttttgttatcgattttttcggaatctttgttgaattgactctgagcagcatctgctaacactttagcactggcgaaaagctctgttgtcgaacctgattcctcgccggcttttttggaatcgtcgccggctccggcgctcttagccaacgatgacagaaaattcatgatttttttgtgaagaagaagattgaattgtgtatatgagagatgatttgaatagtaaggaggctgtatatatagagtctcttctggcacgtacctcatttgttctgattgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="58781" stop="60134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58925" g_stop="58927" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58928" i_stop="59072" i_length="145">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.695" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59073" g_stop="59171" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="102" r_length="99" r_score="0.919"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59172" i_stop="59373" i_length="202">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59374" g_stop="59834" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="561" r_length="459" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E733173" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733173" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58925" e_stop="58927"/>
          <exon e_start="59073" e_stop="59171"/>
          <exon e_start="59374" e_stop="59834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATATCCATGTACATATCTTAAAATACACTAAATATAAGTAATAATTTTTTTATAGTCATAACATTTTCAATCAAAACGCATAATATATATGAGATATTTTTCTCTCAAAAATAAGATTAATCTTTGTTCTTGACTTATTTCCTAGAAGCAACGAAGATAACACTAATAAATTCAAACAAACACAAATTTCACTGAAATACACACAACTTACATACATATTACATAAACCCAACTCCGGCGCCGGCGCCGGCAGTGAACAGTGGCAAATTAAGAAAAAAAAAACTGAAATATAACATCAGCCATAATTTTAAAAAAAGTTAATTAAACTCTAATTACTTCTTGCTTAAGAAATCACCAGCCATCTTAAGATAATCAGCTCCTTCACTCTTTTTTTCCTCCTCCTTATCTCCTTCAACAACCGGCTCCGGCGCCGGATCCGATTCCGATGCAGGCGCTGGTGCTTTTGCTTCTTCAGCAACCGGTGCGGCGGCCGGAGCCTTATCGCCACCGTACTGGTGGAGATAAGTTTGGGCCTTCTCAACGTACTGTCCAATTCCTTGAGTTTCGTCTAATTTTCCGTATTTCTGTGCAGCGTCGAGCACATCGGCTGCTGCTTCAGCCACTTTTTTGTTATCGATTTTTTCGGAATCTTTGTTGAATTGACTCTGAGCAGCATCTGCTAACACTTTAGCACTGGCGAAAAGCTCTGTTGTCGAACCTGATTCCTCGCCGGCTTTTTGGGAATCGTCGCCGGCTCCGGCGCTCTTAGCCAACGATGACAGAAAATTCATGATTTTTTTGTGAAGAAGAAGATTGAATTGTGTATATGAGAGATATGATTTGAATAGTAAGGAGGCTGTATATATAGAGTCTCTTCTGGCACGTACCTCATTTGTTCTGATTGATT</genome_strand>
        <mrna_strand>TTT.................................................................................................................................................TTTTTTTTAAGATAACACTAATAAATTCAAACAAACACAAATTTCACTGAAATACACACAACTTACATACATATTACATAAACCCAACTCCGGCGCCGG..........................................................................................................................................................................................................TGCAGGCGCTGGTGCTTTTGCTTCTTCAGCAACCAGTGCGGCGGCCGGAGCCTTATCGCCACCGTACTGGTGGAGATAAGTTTGGGCCTTCTCAACGTACTGTCCAATTCCTTGAGTTTCGTCTAATTTTCCGTATTTCTGTGCAGCGTCGAGCACATCGGCTGCTGCTTCAGCCACTTTTTTGTTATCGATTTTTTCGGAATCTTTGTTGAATTGACTCTGAGCAGCATCTGCTAACACTTTAGCACTGGCGAAAAGCTCTGTTGTCGAACCTGATTCCTCGCCGGCTTTTTTGGAATCGTCGCCGGCTCCGGCGCTCTTAGCCAACGATGACAGAAAATTCATGATTTTTTTGTGAAGAAGAAGATTGAATTGTGTATATGAGAG--ATGATTTGAATAGTAAGGAGGCTGTATATATAGAGTCTCTTCTGGCACGTACCTCATTTGTTCTGATTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721367" ref_strand="+" ref_description="SGN-E721367 [FC13CF11]">
      <seq>gatatacacaattcaatcttcttcttcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattccaaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcactggttgctgaagaagcaaaagcaccagcgcctgcaccggaatcggatccggcgccggcgccggttgttgaaggagataaggaggaggaaaaaaagattgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagtttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaatttgtgtttgtttgaatttattagtgttatcttcgttgcttctgggatataagtcaagaacaaagattaatcttatttttgagagaaaaatatctcatatatattatgcgttttgattgaaaatgttatgacgatattaaaatttgaaaaaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60055" stop="58666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59756" g_stop="58957" g_length="800"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="798" r_length="798" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E721367" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59756" e_stop="58957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATACACAATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTAGTGTTATCTTCGTTGCTTCTAGGAAATAAGTCAAGAACAAAGATTAATCTTATTTTTGAGAGAAAAATATCTCATATATATTATGCGTTTTGATTGAAAATGTTATGACTATAAAAAAATTATTACTTATATTT</genome_strand>
        <mrna_strand>GATATACACAATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACTGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCACCGGAATCGGATCCGGCGCCGGCGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGATTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAG-TTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTAGTGTTATCTTCGTTGCTTCTGGGATATAAGTCAAGAACAAAGATTAATCTTATTTTTGAGAGAAAAATATCTCATATATATTATGCGTTTTGATTGAAAATGTTATGACGATATTAAAATT-TGAAAAAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724439" ref_strand="+" ref_description="SGN-E724439 [FC24AE03]">
      <seq>ttgatctctcatatacccaattcaatcttcttcttcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattccaaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcaaatgctgctcaaagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcactggttgctgaagaagcaaaagcaccagcgcctgcaccggaatcggatccggcgccggcgccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagtttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatttatgtaagttgtgtgtatttcagtgaaatttgtgtttgtttgaatttattagtgttatcttcgttgcttctgggatataagtcaagaacaaagattaatcttatttttgagagaaaaatatctcatatatattatgcgttttgattgaaaatgttatgacgatattaaaatttgaaaaaattgttacttatattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60062" stop="58666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59765" g_stop="58970" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="795" r_length="795" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E724439" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59765" e_stop="58970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATCTCTCATATACACAATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTAGTGTTATCTTCGTTGCTTCTAGGAAATAAGTCAAGAACAAAGATTAATCTTATTTTTGAGAGAAAAATATCTCATATATATTATGCGTTTTGATTGAAAATGTTATGACTATAAAAAAATT</genome_strand>
        <mrna_strand>TTGATCTCTCATATACCCAATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAAATGCTGCTCAAAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACTGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCACCGGAATCGGATCCGGCGCCGGCGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAG-TTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATTTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTAGTGTTATCTTCGTTGCTTCTGGGATATAAGTCAAGAACAAAGATTAATCTTATTTTTGAGAGAAAAATATCTCATATATATTATGCGTTTTGATTGAAAATGTTATGACGATATTAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309385" ref_strand="+" ref_description="SGN-E309385 [cLEY-22-O4]">
      <seq>aggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagttttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaatttgtgtttgtttgaatttattagtgttatcttcgttgcttctaggaaataagtcaagaacaaagattaatcttatttttgagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59608" stop="58722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59308" g_stop="59018" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E309385" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59308" e_stop="59018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTAGTGTTATCTTCGTTGCTTCTAGGAAATAAGTCAAGAACAAAGATTAATCTTATTTTTGAGAGAAAAATATCTC</genome_strand>
        <mrna_strand>AGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTAGTGTTATCTTCGTTGCTTCTAGGAAATAAGTCAAGAACAAAGATTAATCTTATTTTTGAGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733915" ref_strand="+" ref_description="SGN-E733915 [LB11BB08]">
      <seq>attcaatcttcttcttcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattccaaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcactggttgctgaagaagcaaaagcaccagcgcctgcaccggaatcggatccggcgccggcgccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcacagaactaattagagtttaattaactttttttaaaattatggctgatgttatatttcagtttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaatttgtgtttgtttgaatttattagcgttatcttcgttgcttctgggatctaagtcaagaacaaagattaatcttatttttgagaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60046" stop="58725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59746" g_stop="59027" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E733915" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59746" e_stop="59027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCA-AGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTAGTGTTATCTTCGTTGCTTCTAGGAAATAAGTCAAGAACAAAGATTAATCTTATTTTTGAGAGAA</genome_strand>
        <mrna_strand>ATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACTGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCACCGGAATCGGATCCGGCGCCGGCGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCACAGAACTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAG-TTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTAGCGTTATCTTCGTTGCTTCTGGGATCTAAGTCAAGAACAAAGATTAATCTTATTTTTGAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722893" ref_strand="+" ref_description="SGN-E722893 [FC18CF12]">
      <seq>gatctctcatatacaccttcaatcttcttcttcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattccaaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcactggttgctgaagaagcaaaagcaccagcgcctgcaccggaatcggatccggcgccggcgccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagtttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaatttgtgtttgtttgaatttattagtgttatcttcgttgcttctgggatataagtcaagaacaaagattaatcttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60045" stop="58739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59763" g_stop="59040" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="722" r_length="722" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="723" polyA_stop="746"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E722893" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59763" e_stop="59040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTCTCATATACACAATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTAGTGTTATCTTCGTTGCTTCTAGGAAATAAGTCAAGAACAAAGATTAATCTT</genome_strand>
        <mrna_strand>GATCTCTCATATACAC-CTTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACTGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCACCGGAATCGGATCCGGCGCCGGCGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAG-TTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTAGTGTTATCTTCGTTGCTTCTGGGATATAAGTCAAGAACAAAGATTAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344471" ref_strand="+" ref_description="SGN-E344471 [cTOF-14-B21]">
      <seq>aatcttcttcttacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattcccaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcaccggttgctgaagaagcaaaagcaccagcgcctgcatcggaatcggatccggcgccggagccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagttttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaatttgtgtttgtttgaatttattagtgttatcttcgttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60042" stop="58773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59742" g_stop="59073" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E344471" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59742" e_stop="59073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTAGTGTTATCTTCGTTGCTT</genome_strand>
        <mrna_strand>AATCTTCTTCTT-ACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTAGTGTTATCTTCGTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344480" ref_strand="+" ref_description="SGN-E344480 [cTOF-14-F7]">
      <seq>cgacgattcccaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcaccggttgctgaagaagcaaaagcaccagcgcctgcatcggaatcggatccggcgccggagccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagttttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaatttgtgtttgtttgaatttattagtgttatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59977" stop="58780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59677" g_stop="59080" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E344480" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59677" e_stop="59080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTAGTGTTATCTTC</genome_strand>
        <mrna_strand>CGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTAGTGTTATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341729" ref_strand="+" ref_description="SGN-E341729 [cTOF-9-H22]">
      <seq>aagcaaaagcaccagcgcctgcatcggaatcggatccggcgccggagccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagttttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaatttgtgtttgtttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59696" stop="58798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59396" g_stop="59089" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E341729" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59396" e_stop="59089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTAGT</genome_strand>
        <mrna_strand>AAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705145" ref_strand="+" ref_description="SGN-E705145 [FA26BB11]">
      <seq>caatcttcttcttcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattccaaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcactggttgctgaagaagcaaaagcaccagcgcctgcaccggaatcggatccggcgccggcgccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagtttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaatttgtgtttgtttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60043" stop="58798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59743" g_stop="59090" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E705145" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59743" e_stop="59090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTAG</genome_strand>
        <mrna_strand>CAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACTGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCACCGGAATCGGATCCGGCGCCGGCGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAG-TTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716853" ref_strand="+" ref_description="SGN-E716853 [FB18AH08]">
      <seq>cttcttcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattccaaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcactggttgctgaagaagcaaaagcaccagcgcctgcaccggaatcggatccggcgccggcgccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagtttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaatttgtgtttgtttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60036" stop="58798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59736" g_stop="59090" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E716853" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59736" e_stop="59090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTAG</genome_strand>
        <mrna_strand>CTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACTGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCACCGGAATCGGATCCGGCGCCGGCGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAG-TTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336499" ref_strand="+" ref_description="SGN-E336499 [cTOE-4-D22]">
      <seq>cgccggagccggcgacgattcccaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcaccggttgctgaagaagcaaaagcaccagcgcctgcatcggaatcggatccggcgccggagccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagttttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaaggtgtgtgtatttcagtgaaatttgtgtttgtttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59989" stop="58798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59689" g_stop="59090" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E336499" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59689" e_stop="59090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTAG</genome_strand>
        <mrna_strand>CGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGGTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724640" ref_strand="+" ref_description="SGN-E724640 [FC24CH10]">
      <seq>tagggcgattggcggccaatcggccgaatgatctctcatatacccaattaaatcttcttcttcacaaaaaaatcatgaattttctctcatcgttggctaagagcgccggagccggcgacgattccaaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcactggttgctgaagaagcaaaagcaccagcgcctgcaccggaatcggatccggcgccggcgccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagtttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaatttgtgtttgtttgaatttattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60064" stop="58791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59762" g_stop="59091" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="701" r_length="671" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="702" polyA_stop="736"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E724640" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59762" e_stop="59091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTCATATACACAATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTA</genome_strand>
        <mrna_strand>ATCTCTCATATACCCAATTAAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTCTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACTGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCACCGGAATCGGATCCGGCGCCGGCGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAG-TTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344259" ref_strand="+" ref_description="SGN-E344259 [cTOF-16-G5]">
      <seq>aatcttcttcttacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattcccaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcaccggttgctgaagaagcaaaagcaccagcgcctgcatcggaatcggatccggcgccggagccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagttttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaatttgtgtttgtttgaatttatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60042" stop="58791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59742" g_stop="59091" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E344259" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59742" e_stop="59091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTA</genome_strand>
        <mrna_strand>AATCTTCTTCTT-ACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732970" ref_strand="+" ref_description="SGN-E732970 [LB03CE07]">
      <seq>attcaatcttcttcttcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattccaaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcactggttgctgaagaagcaaaagcaccagcgcctgcaccggaatcggatccggcgccggcgccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagtttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaatttgtgtttgtttgaatttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60046" stop="58794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59746" g_stop="59095" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="652" polyA_stop="670"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E732970" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59746" e_stop="59095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTT</genome_strand>
        <mrna_strand>ATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACTGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCACCGGAATCGGATCCGGCGCCGGCGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAG-TTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224100" ref_strand="+" ref_description="SGN-E224100 [cLEL-19-I4](-)">
      <seq>aaggcccaaacttatctccaccagtacggtggcaataaggctccggccaccgcaccggttgctaaagaaacaaaagccccagcgcctgcatcggaatcggatccggcgccggagccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttatttaactttttttaaaattatggctgatgttatatttcagttttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaatttgtgtttgtttgaatttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59763" stop="58794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59463" g_stop="59095" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="370" polyA_stop="387"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E224100" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59463" e_stop="59095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTT</genome_strand>
        <mrna_strand>AAGGCCCAAACTTATCTCCACCAGTACGGTGGCAATAAGGCTCCGGCCACCGCACCGGTTGCTAAAGAAACAAAAGCCCCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTATTTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723799" ref_strand="+" ref_description="SGN-E723799 [FC21DH11]">
      <seq>ttcttcttcaaaaaaaatcatgaattttctgccatcgatggctaagagcgccggagccggcgacgattccaaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcactggttgctgaagaagcaaaagcaccagcgcctgcaccggaatcggatccggcgccggcgccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaacttttttaaaattatggctgatgttatatttcagtttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaatttgtgtttgtttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60038" stop="58798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59738" g_stop="59098" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E723799" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59738" e_stop="59098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAA</genome_strand>
        <mrna_strand>TTCTTCTTCA-AAAAAAATCATGAATTTTCTGCCATCGATGGCTAAGAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACTGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCACCGGAATCGGATCCGGCGCCGGCGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAAC-TTTTTTAAAATTATGGCTGATGTTATATTTCAG-TTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721833" ref_strand="+" ref_description="SGN-E721833 [FC15BG05]">
      <seq>gggcgattggcggccaatcggccgaattgatctctcnatacacacttcaatcttcttcttcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattccaaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcactggttgctgaagaagcaaaagcaccagcgcctgcaccggaatcggatccggcgccggcgccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagtttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaatttgtgtttgtttgaaaaaaaaaaaaaaaaaaaaaaaaaaaattcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60053" stop="58798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59762" g_stop="59099" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="691" r_length="662" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="692" polyA_stop="719"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E721833" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59762" e_stop="59099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTCATATACACAATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGA</genome_strand>
        <mrna_strand>ATCTCTC-NATACACACTTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACTGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCACCGGAATCGGATCCGGCGCCGGCGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAG-TTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716373" ref_strand="+" ref_description="SGN-E716373 [FB16DE04]">
      <seq>tctatcttcttcttcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattccaaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcactggttgctgaagaagcaaaagcaccagcgcctgcaccggaatcggatccggcgccggcgccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagtttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaatttgtgtttgtttgaaaannaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60044" stop="58798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59744" g_stop="59099" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="672"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E716373" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59744" e_stop="59099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGA</genome_strand>
        <mrna_strand>TCTATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACTGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCACCGGAATCGGATCCGGCGCCGGCGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAG-TTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372729" ref_strand="+" ref_description="SGN-E372729 [TUS-32-D14]">
      <seq>tcaatcttcttcttcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattccaaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcactggttgctgaagaagcaaaagcaccagcgcctgcaccggaatcggatccggcgccggcgccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagtttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaatttgtgtttgtttgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60044" stop="58798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59744" g_stop="59099" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="646" polyA_stop="666"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E372729" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59744" e_stop="59099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGA</genome_strand>
        <mrna_strand>TCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACTGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCACCGGAATCGGATCCGGCGCCGGCGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAG-TTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548806" ref_strand="+" ref_description="SGN-E548806 [TUS-64-J12](-)">
      <seq>aaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattcccaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgcttgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcaccggttgctgaagaagcaaaagccccagcgcctgcatcggaatcggatccggcgccggagccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgattttttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagttttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaatttgtgtttgtttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60027" stop="58798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59727" g_stop="59099" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="630" polyA_stop="667"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E548806" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59727" e_stop="59099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGA</genome_strand>
        <mrna_strand>AAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTTGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCCCCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTTTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372728" ref_strand="+" ref_description="SGN-E372728 [TUS-32-D14](-)">
      <seq>aaaaaatcatgaattatttgtcatcgttggctaagagcgccggagccggcgacgattccaaaaaagccggcgaggaatcaggtttgacaacagagctttttgccagtggtaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcaaccgatgtgcttgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggccccaacttatttcccccagtacggtggcgataaggctccggcccccgccctggttgctgaaaaagcaaaagccccagcgcctgccccggaatcggatccggcgccggcgccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattattttaaaatgggtggtgattttttaagcaaaaagtaattaaagtttaattaactttttttaaaattatgggtgatgttatatttcagttttttttttttaatttgcccctgttccctgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaatttgtgtttgtttgtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60026" stop="58798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59726" g_stop="59099" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="628" polyA_stop="648"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E372728" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59726" e_stop="59099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGA</genome_strand>
        <mrna_strand>AAAAAATCATGAATTATTTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCGAGGAATCAGGTTTGACAACAGAGCTTTTTGCCAGTGGTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAACCGATGTGCTTGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCCAACTTATTTCCCCCAGTACGGTGGCGATAAGGCTCCGGCCCCCGCCCTGGTTGCTGAAAAAGCAAAAGCCCCAGCGCCTGCCCCGGAATCGGATCCGGCGCCGGCGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATTTTAAAATGGGTGGTGATTTTTTAAGCAAAAAGTAATTAAAGTTTAATTAACTTTTTTTAAAATTATGGGTGATGTTATATTTCAGTTTTTTTTTT-TTAATTTGCCCCTGTTCCCTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335007" ref_strand="+" ref_description="SGN-E335007 [cTOE-9-P10]">
      <seq>aaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcaccggttgctgaagaagcaaaagcaccagcgcctgcatcggaatcggatccggcgccggagccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagttttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagtttgtgtgtatttcagtgaaattttgtgtttgtttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59880" stop="58798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59580" g_stop="59099" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="500"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E335007" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59580" e_stop="59099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAG-TTGTGTGTATTTCAGTGAAA-TTTGTGTTTGTTTGA</genome_strand>
        <mrna_strand>AAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTTGTGTGTATTTCAGTGAAATTTTGTGTTTGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237043" ref_strand="+" ref_description="SGN-E237043 [cLEL-7-P7](-)">
      <seq>aaggaattggacagtacgttgagaaggcccaatcttatctcccccagtacggtggcgataaggctccggccgccgcaccggttgctaagaagcaaaagccccagcgcctgcatcggaatcggatccggcgccggagccggttgtttaaggagataaggaggaggaaaaaaagagtgaaggaggctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagttttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtcatatggatgtaagttgtgtgtatcccagtgaaatttgtgtttgtttcacaaaaaaaaaaaaaaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59786" stop="58799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59486" g_stop="59099" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="409"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E237043" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59486" e_stop="59099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGA-GCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGA</genome_strand>
        <mrna_strand>AAGGAATTGGACAGTACGTTGAGAAGGCCCAATCTTATCTCCCCCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCT-AAGAAGCAAAAGCCCCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTTAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTCATATGGATGTAAGTTGTGTGTATCCCAGTGAAATTTGTGTTTGTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237434" ref_strand="+" ref_description="SGN-E237434 [cLEL-7-P7](-)">
      <seq>ggcccaaacttatctcccccagtacggtggcgataaggctccggccgccgccccggttgctgaagaagcaaaagccccagcgcctgcatcggaatcggatccggcgccggagccggttgtttaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagttttttttttcttaatttgcccctgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaatttgtgtttgtttccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59761" stop="58801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59461" g_stop="59105" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="364" polyA_stop="384"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E237434" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59461" e_stop="59105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTT</genome_strand>
        <mrna_strand>GGCCCAAACTTATCTCCCCCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCCCCGGTTGCTGAAGAAGCAAAAGCCCCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTTAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCCCTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723957" ref_strand="+" ref_description="SGN-E723957 [FC22CD06]">
      <seq>aatcggccgaattgatctctcatatacacaattcaatcttcttcttcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattccaaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcaaagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcactggttgctgaagaagcaaaagcaccagcgcctgcaccggaatcggatccggcgccggcgccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagttttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgggtgtatttcggggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60062" stop="58814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59776" g_stop="59115" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="668" polyA_stop="718"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E723957" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59776" e_stop="59115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATTCAAATCATATCTCTCATATACACAATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAA</genome_strand>
        <mrna_strand>AATCGGCCGAATTGATCTCTCATATACACAATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAAAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACTGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCACCGGAATCGGATCCGGCGCCGGCGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGGGTGTATTTCGGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543927" ref_strand="-" ref_description="SGN-E543927 [TUS-65-P23]">
      <seq>tcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattcccaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcaccggttgctgaagaagcaaaagcaccagcgcctgcatcggaatcggatccggcgccggagccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagttttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaaaaaaaaaaaaaaaaaaactccagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60031" stop="58814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59731" g_stop="59115" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="618" polyA_stop="636"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E543927" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543927" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59731" e_stop="59115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAA</genome_strand>
        <mrna_strand>TCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712063" ref_strand="+" ref_description="SGN-E712063 [FB03DB08]">
      <seq>gctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcactggttgctgaagaagcaaaagcaccagcgcctgcaccggaatcggatccggcgccggcgccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagtttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59827" stop="58814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59527" g_stop="59115" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="413" polyA_stop="423"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E712063" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59527" e_stop="59115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAA</genome_strand>
        <mrna_strand>GCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACTGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCACCGGAATCGGATCCGGCGCCGGCGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAG-TTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305247" ref_strand="-" ref_description="SGN-E305247 [cLEX-15-C20]">
      <seq>tacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcaccggttgctgaagaagcaaaagcaccagcgcctgcatcggaatcggatccggcgccggagccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagttttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaaaaaaaaaaaaaaaaaaactccagactagttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59808" stop="58814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59508" g_stop="59115" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="395" polyA_stop="413"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E305247" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305247" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59508" e_stop="59115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAA</genome_strand>
        <mrna_strand>TACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230760" ref_strand="+" ref_description="SGN-E230760 [cLEL-35-H8](-)">
      <seq>ggaattggacagtacgttgaaaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcaccggttgctgaagaagcaaaagcaccagcgcctgcatcggaatcggatccggcgccggagccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagttttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgtatgtaagttgtgtgtatttcagtgaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59784" stop="58814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59484" g_stop="59115" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="371" polyA_stop="391"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E230760" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59484" e_stop="59115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAA</genome_strand>
        <mrna_strand>GGAATTGGACAGTACGTTGAAAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302477" ref_strand="+" ref_description="SGN-E302477 [cLEW-27-J22]">
      <seq>acaattcaatcttcttcttcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattcccaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcaccggttgctgaagaagcaaaagcaccagcgcctgcatcggaatcggatccggcgccggagccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagttttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttatgtaatatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60049" stop="58840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59749" g_stop="59140" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E302477" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59749" e_stop="59140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTA</genome_strand>
        <mrna_strand>ACAATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543001" ref_strand="+" ref_description="SGN-E543001 [TUS-64-J12]">
      <seq>cacaattcaatcttcttcttcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattcccaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcaccggttgctgaagaagcaaaagcaccagcgcctgcatcggaatcggatccggcgccggagccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagttttttttttcttaatttgccactgttcactgccggcgccggcgccggagttgggtttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60050" stop="58850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59750" g_stop="59150" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E543001" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59750" e_stop="59150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTAT</genome_strand>
        <mrna_strand>CACAATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719308" ref_strand="+" ref_description="SGN-E719308 [FC07BH02]">
      <seq>ggcgattggcggcaaatcggccgaattgatctctcatatactccattcaatcttcttcttcaaaagaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattccaaaaaagccggccaggaatcaggttcgacaacagagcttttcgcctgtgctaaagtgttagcagatgctgctcaaagtcgattcaacaaagattccgaaaaaatcgattacaaaaaagtggctgaagcagcaaccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcactggttgctgaagaagcaaaagcaccagcgcctgcaccggaatcggatccggcgccggcgccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagtttttttttttcttaatttgccactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60062" stop="58884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59762" g_stop="59184" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="607" r_length="579" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E719308" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59762" e_stop="59184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTCATATACACAATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAG-TTTTTTTTTTCTTAATTTGCCACTGT</genome_strand>
        <mrna_strand>ATCTCTCATATACTCCATTCAATCTTCTTCTTCA-AAAGAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCCAGGAATCAGGTTCGACAACAGAGCTTTTCGCCTGTGCTAAAGTGTTAGCAGATGCTGCTCAAAGTCGATTCAACAAAGATTCCGAAAAAATCGATTACAAAAAAGTGGCTGAAGCAGCAACCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACTGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCACCGGAATCGGATCCGGCGCCGGCGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTTCTTAATTTGCCACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304921" ref_strand="+" ref_description="SGN-E304921 [cLEX-10-B5]">
      <seq>ttcaatcttcttcttcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattcccaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcaccggttgctgaagaagcaaaagcaccagcgcctgcatcggaatcggatccggcgccggagccggttgttgaaggagataaggaggaggaaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagntttttttttcttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60045" stop="58894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59745" g_stop="59194" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E304921" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59745" e_stop="59194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGG-AAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAAT</genome_strand>
        <mrna_strand>TTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGNTTTTTTTTTCTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284535" ref_strand="+" ref_description="SGN-E284535 [cLES-3-B3]">
      <seq>aaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattcccaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcaccggttgctgaagaagcaaaagcaccagcgcctgcatcggaatcggatccggcgccggagccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggctgatgttatatttcagntttttttttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60023" stop="58896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59723" g_stop="59196" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E284535" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59723" e_stop="59196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTA</genome_strand>
        <mrna_strand>AAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGNTTTTTTTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312546" ref_strand="+" ref_description="SGN-E312546 [cLEZ-20-L16]">
      <seq>ttcaatcttcttcttcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattcccaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcaccggttgctgaagaaagcaaaagcaccagcgcctgcatcggaatcggatccggcgccggagccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaacttttttaaaattatggctgatgttatatttcagntttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60045" stop="58902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59745" g_stop="59201" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E312546" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59745" e_stop="59201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAG-AAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTT</genome_strand>
        <mrna_strand>TTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAAC-TTTTTTAAAATTATGGCTGATGTTATATTTCAGNTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296437" ref_strand="+" ref_description="SGN-E296437 [cLET-19-K2]">
      <seq>acaattcaatcttcttcttcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattccaaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagagctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcactggttgctgaagaagcaaaagcaccagcgcctgcaccggaatcggatccggcgccggcgccggttgttgaaggagataatgaggaggaaaacaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60049" stop="58926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59749" g_stop="59226" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E296437" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59749" e_stop="59226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGC</genome_strand>
        <mrna_strand>ACAATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGAGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACTGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCACCGGAATCGGATCCGGCGCCGGCGCCGGTTGTTGAAGGAGATAATGAGGAGGAAAACAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296299" ref_strand="+" ref_description="SGN-E296299 [cLET-19-K2](-)">
      <seq>gccataattttaaaaaaagttaattaaactctaattacttcttgcttaagaaatcaccagccatcttaagataatcagctccttcactcttgttttcctcctcattatctccttcaacaaccggcgccggcgccggatccgattccggtgcaggcgctggtgcttttgcttcttcagcaaccagtgcggcggccggagccttatcgccaccgtactggtggagataagtttgggccttctcaacgtactgtccaattccttgagtttcgtctaattttccgtatttctgtgcagcgtcgagcacatcggctgctgcttcagccacttttttgttatcgattttttcggaatctttgttgaattgactctgagcagcatctgctaacactttagctctggcgaaaagctctgttgtcgaacctgattcctcgccggcttttttggaatcgtcgccggctccggcgctcttagccaacgatgacagaaaattcatgatttttttgtgaagaagaagattgaattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="58926" stop="60049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59226" g_stop="59749" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E296299" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59226" e_stop="59749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATAATTTTAAAAAAAGTTAATTAAACTCTAATTACTTCTTGCTTAAGAAATCACCAGCCATCTTAAGATAATCAGCTCCTTCACTCTTTTTTTCCTCCTCCTTATCTCCTTCAACAACCGGCTCCGGCGCCGGATCCGATTCCGATGCAGGCGCTGGTGCTTTTGCTTCTTCAGCAACCGGTGCGGCGGCCGGAGCCTTATCGCCACCGTACTGGTGGAGATAAGTTTGGGCCTTCTCAACGTACTGTCCAATTCCTTGAGTTTCGTCTAATTTTCCGTATTTCTGTGCAGCGTCGAGCACATCGGCTGCTGCTTCAGCCACTTTTTTGTTATCGATTTTTTCGGAATCTTTGTTGAATTGACTCTGAGCAGCATCTGCTAACACTTTAGCACTGGCGAAAAGCTCTGTTGTCGAACCTGATTCCTCGCCGGCTTTTTGGGAATCGTCGCCGGCTCCGGCGCTCTTAGCCAACGATGACAGAAAATTCATGATTTTTTTGTGAAGAAGAAGATTGAATTGT</genome_strand>
        <mrna_strand>GCCATAATTTTAAAAAAAGTTAATTAAACTCTAATTACTTCTTGCTTAAGAAATCACCAGCCATCTTAAGATAATCAGCTCCTTCACTCTTGTTTTCCTCCTCATTATCTCCTTCAACAACCGGCGCCGGCGCCGGATCCGATTCCGGTGCAGGCGCTGGTGCTTTTGCTTCTTCAGCAACCAGTGCGGCGGCCGGAGCCTTATCGCCACCGTACTGGTGGAGATAAGTTTGGGCCTTCTCAACGTACTGTCCAATTCCTTGAGTTTCGTCTAATTTTCCGTATTTCTGTGCAGCGTCGAGCACATCGGCTGCTGCTTCAGCCACTTTTTTGTTATCGATTTTTTCGGAATCTTTGTTGAATTGACTCTGAGCAGCATCTGCTAACACTTTAGCTCTGGCGAAAAGCTCTGTTGTCGAACCTGATTCCTCGCCGGCTTTTTTGGAATCGTCGCCGGCTCCGGCGCTCTTAGCCAACGATGACAGAAAATTCATGATTTTTTTGTGAAGAAGAAGATTGAATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302000" ref_strand="+" ref_description="SGN-E302000 [cLEX-3-C6]">
      <seq>acaattcaatcttcttcttcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattcccaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcaccggttgctgaagaagcaaaagcaccagcgcctgcatcggaatcggatccggcgccggagccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaactttttttaaaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60049" stop="58929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59749" g_stop="59229" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E302000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59749" e_stop="59229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTAT</genome_strand>
        <mrna_strand>ACAATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285320" ref_strand="+" ref_description="SGN-E285320 [cLER-20-E12]">
      <seq>acaattcaatcttcttcttcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattcccaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcaccggttgctgaagaagcaaaagcaccagcgcctgcatcggaatcggatccggcgccggagccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaatgaactttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60049" stop="58938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59749" g_stop="59238" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E285320" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59749" e_stop="59238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTT</genome_strand>
        <mrna_strand>ACAATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATGAACTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285662" ref_strand="+" ref_description="SGN-E285662 [cLES-5-J5]">
      <seq>aaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattcccaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcaccggttgctgaagaagcaaaagcaccagcgcctgcatcggaatcggatccggcgccggagccggttgttggaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttcttaagcaagaagtaattagagtttaattaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60027" stop="58943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59727" g_stop="59243" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E285662" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59727" e_stop="59243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTT-GAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACT</genome_strand>
        <mrna_strand>AAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282802" ref_strand="+" ref_description="SGN-E282802 [cLER-15-C4]">
      <seq>tcaatcttcttcttcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattcccaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcaccggttgctgaagaagcaaaagcaccagcgcctgcatcggaatcggatcccgcgccggagccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgattttcttaagcaagaagtaattagagtttaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60044" stop="58947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59744" g_stop="59247" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E282802" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59744" e_stop="59247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGA-TTTCTTAAGCAAGAAGTAATTAGAGTTTAATT</genome_strand>
        <mrna_strand>TCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCCGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTTCTTAAGCAAGAAGTAATTAGAGTTTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397775" ref_strand="+" ref_description="SGN-E397775 [TUS-46-J15]">
      <seq>ttcttcttccaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattcccaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcaccggttgctgaagaagcaaaagcaccagcgcctgcatcggaatcggatccggcgccggagccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaagatggctggtgatttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60038" stop="58973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59738" g_stop="59273" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E397775" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59738" e_stop="59273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTT</genome_strand>
        <mrna_strand>TTCTTCTTC-CAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292834" ref_strand="+" ref_description="SGN-E292834 [cLET-11-C12]">
      <seq>tcaatcttcttcttcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattccaaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcactggttgctgaagaagcaaaagcaccagcgcctgcaccggaatcggatccggcgccggcgccggttgttgaaggagataaggaggaggaaaaaaagagtgaaggagctgattatcttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60044" stop="58990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59744" g_stop="59290" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E292834" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59744" e_stop="59290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAG</genome_strand>
        <mrna_strand>TCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACTGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCACCGGAATCGGATCCGGCGCCGGCGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296853" ref_strand="+" ref_description="SGN-E296853 [cLET-26-F18]">
      <seq>ggctaagagcgccggagccggcgacgattccaaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcactggttgctgaagaagcaaaagcaccagcgcctgcaccggaatcggatccggcgccggcgccggttgttgaaggagataaggaggaggaaaaaaagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59998" stop="59011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59698" g_stop="59311" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E296853" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59698" e_stop="59311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGT</genome_strand>
        <mrna_strand>GGCTAAGAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACTGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCACCGGAATCGGATCCGGCGCCGGCGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283935" ref_strand="+" ref_description="SGN-E283935 [cLER-13-D21]">
      <seq>tcttcttcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattcccaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcaccggttgctgaagaagcaaaagcaccagcgcctgcatcggaatcggatccggcgccggagccggttgttgaaggagataaggaggaggaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60037" stop="59016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59737" g_stop="59316" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E283935" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59737" e_stop="59316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAA</genome_strand>
        <mrna_strand>TCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721584" ref_strand="+" ref_description="SGN-E721584 [FC14BF05]">
      <seq>aattttctgtcatcgttggctaaaagcgccggagccggcgacgattccaaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcaaagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcactggttgctgaagaagcaaaagctccagcgcctgcaccggaatcggatccggcgccggcgccggttgttgaaggagataaggaggaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60015" stop="59019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59715" g_stop="59319" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E721584" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59715" e_stop="59319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAA</genome_strand>
        <mrna_strand>AATTTTCTGTCATCGTTGGCTAAAAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAAAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACTGGTTGCTGAAGAAGCAAAAGCTCCAGCGCCTGCACCGGAATCGGATCCGGCGCCGGCGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294863" ref_strand="+" ref_description="SGN-E294863 [cLET-17-E1]">
      <seq>cacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattccaaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcactggttgctgaagaagcaaaagcaccagcgcctgcaccggaatcggatccggcgccggcgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60030" stop="59048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59730" g_stop="59348" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E294863" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59730" e_stop="59348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCC</genome_strand>
        <mrna_strand>CACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACTGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCACCGGAATCGGATCCGGCGCCGGCGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294864" ref_strand="+" ref_description="SGN-E294864 [cLET-17-E1](-)">
      <seq>ggcgccggcgccggatccgattccggtgcaggcgctggtgcttttgcttcttcagcaaccagtgcggcggccggagccttatcgccaccgtactggtggagataagtttgggccttctcaacgtactgtccaattccttgagtttcgtctaattttccgtatttctgtgcagcgtcgagcacatcggctgctgcttcagccacttttttgttatcgattttttcggaatctttgttgaattgactctgagcagcatctgctaacactttagcactggcgaaaagctctgttgtcgaacctgattcctcgccggcttttttggaatcgtcgccggctccggcgctcttagccaacgatgacagaaaattcatgatttttttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="59048" stop="60030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59348" g_stop="59730" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E294864" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59348" e_stop="59730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCCGGCGCCGGATCCGATTCCGATGCAGGCGCTGGTGCTTTTGCTTCTTCAGCAACCGGTGCGGCGGCCGGAGCCTTATCGCCACCGTACTGGTGGAGATAAGTTTGGGCCTTCTCAACGTACTGTCCAATTCCTTGAGTTTCGTCTAATTTTCCGTATTTCTGTGCAGCGTCGAGCACATCGGCTGCTGCTTCAGCCACTTTTTTGTTATCGATTTTTTCGGAATCTTTGTTGAATTGACTCTGAGCAGCATCTGCTAACACTTTAGCACTGGCGAAAAGCTCTGTTGTCGAACCTGATTCCTCGCCGGCTTTTTGGGAATCGTCGCCGGCTCCGGCGCTCTTAGCCAACGATGACAGAAAATTCATGATTTTTTTGTG</genome_strand>
        <mrna_strand>GGCGCCGGCGCCGGATCCGATTCCGGTGCAGGCGCTGGTGCTTTTGCTTCTTCAGCAACCAGTGCGGCGGCCGGAGCCTTATCGCCACCGTACTGGTGGAGATAAGTTTGGGCCTTCTCAACGTACTGTCCAATTCCTTGAGTTTCGTCTAATTTTCCGTATTTCTGTGCAGCGTCGAGCACATCGGCTGCTGCTTCAGCCACTTTTTTGTTATCGATTTTTTCGGAATCTTTGTTGAATTGACTCTGAGCAGCATCTGCTAACACTTTAGCACTGGCGAAAAGCTCTGTTGTCGAACCTGATTCCTCGCCGGCTTTTTTGGAATCGTCGCCGGCTCCGGCGCTCTTAGCCAACGATGACAGAAAATTCATGATTTTTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299441" ref_strand="+" ref_description="SGN-E299441 [cLET-43-J3]">
      <seq>caaaaaaatcatgaattttctgttatcgctggctaagagcgccggagccggcgacgattccaaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgattacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatctccaccagtacggtggcgataaggctccggccgccgcactggttgctgaagaagcaaaagcaccagcgcctgcaccggaatcggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60028" stop="59061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59728" g_stop="59361" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E299441" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59728" e_stop="59361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATC</genome_strand>
        <mrna_strand>CAAAAAAATCATGAATTTTCTGTTATCGCTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATTACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACTGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCACCGGAATCGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298479" ref_strand="+" ref_description="SGN-E298479 [cLET-41-O5]">
      <seq>caatcttcttcttcacaaaaaaatcgggaattttctgtcatcgttggctaagagcgccggagccggcgacgattccaaaaaagccggcgaggaatcatgttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcatagtcaattcaacaaagattccgtaaaaatcgattacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgagaaggcccaaacttatcttcaccagtacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60043" stop="59136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59743" g_stop="59436" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E298479" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59743" e_stop="59436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACG</genome_strand>
        <mrna_strand>CAATCTTCTTCTTCACAAAAAAATCGGGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCGAGGAATCATGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCATAGTCAATTCAACAAAGATTCCGTAAAAATCGATTACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTTCACCAGTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290567" ref_strand="+" ref_description="SGN-E290567 [cLES-20-D21]">
      <seq>tcttcttcacaaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattcccaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattggacagtacgttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60037" stop="59164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59737" g_stop="59464" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E290567" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59737" e_stop="59464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAG</genome_strand>
        <mrna_strand>TCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291654" ref_strand="+" ref_description="SGN-E291654 [cLET-6-E3]">
      <seq>aaaaaaatcatgaattttctgtcatcgttggctaagagcgccggagccggcgacgattccaaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagagtcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgcacagaaatacggaaaattagacgaaactcaaggaattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60027" stop="59176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59727" g_stop="59476" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E291654" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59727" e_stop="59476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGA</genome_strand>
        <mrna_strand>AAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCAAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343813" ref_strand="+" ref_description="SGN-E343813 [cTOF-12-O5]">
      <seq>aattttctgtcatcgttggctaagagcgccggagccggcgaacgattcccaaaaagccggcgaggaatcaggttcgacaacagagcttttcgccagtgctaaagtgttagcagatgctgctcagaatcaattcaacaaagattccgaaaaaatcgataacaaaaaagtggctgaagcagcagccgatgtgctcgacgctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="60015" stop="59215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59715" g_stop="59515" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E343813" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59715" e_stop="59515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCG-ACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCA</genome_strand>
        <mrna_strand>AATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGAACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAATCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698248" ref_strand="+" ref_description="SGN-E698248 [FA05CH06]">
      <seq>gccagctaaaaccctactgataccctaccgtccgtacaaatcccggcgtaaatggaaccggaaaaatcctcagctcaaatcaaagacaaagatttgttcaaagccgctgaatctggtgattcatcgctcttcaaatcacttcctgaagaacaactcctcaaatccctctctctccgtaatgaagatgatcgttctctccttcacgttgccgtctctttcggacactctgaggtggtgaagattcttgcagctgctgatccgtcagtgagtggtataaatagtggtgatgaagaaggttgggtgccgttgcattctgccgcaagcagtggtaatgtggaaattgtggagattttgcttagcagaggggctgatgtaaatctgaaaaatgatggtggccgcactgctcttcattatgctgctagcaagggtcaagtgaaaatagctgaacttttgatttcacgtggtgctaagatcaatgcaaaagacaaggtaggatgcaccccattgcatcgtgcagctagcacggggaactctcagctgtgtgaactattagttgaggaaggcgctgaagttgatgaagttgacaaggcaggggaaacacctctgatgactgctgttgtatgcggcaataaagaggtagctttgctcctcataagacatggagcagatgttgacattgaggacaaggaagggtacactgttcttggtcgagcttctaatgatcttcgtccagtattagtcgatgctgcaaagatgatgctcgaaggataaactccacgacctcatgatagctcatcagaaaacgcaagccaactctgtaaatggntcacctgaagcgtgctcaactagacacataccgatgaatattctggaactatttaggtgtagggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="64749" stop="68238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65049" g_stop="65279" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65280" i_stop="66285" i_length="1006">
            <donor d_prob="0.680" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66286" g_stop="66418" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="364" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66419" i_stop="67118" i_length="700">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67119" g_stop="67243" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="489" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67244" i_stop="67351" i_length="108">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67352" g_stop="67498" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="636" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67499" i_stop="67683" i_length="185">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67684" g_stop="67938" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="891" r_length="255" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E698248" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65049" e_stop="65279"/>
          <exon e_start="66286" e_stop="66418"/>
          <exon e_start="67119" e_stop="67243"/>
          <exon e_start="67352" e_stop="67498"/>
          <exon e_start="67684" e_stop="67938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGCTAAAACCCTACTGATACCCTACCGTCCGTACAAATCCCGGCGTAAATGGAACCGGAAAAATCCTCAGCTCAAATCAAAGACAAAGATTTGTTCAAAGCCGCTGAATCTGGTGATTCATCGCTCTTCAAATCACTTCCTGAAGAACAACTCCTCAAATCCCTCTCTCTCCGTAATGAAGATGATCGTTCTCTCCTTCACGTTGCCGTCTCTTTCGGACACTCTGAGGTAATTTCAGCGAAAACGAGTAAAAATTGTGCTTCGTGTAACTCCTTCCGCAAAAAATTATACTGTATATACAATGTTAAAATTATTTTTATGTATATAGAGTAGATGTTGAATTCCCTTGGATCGGGATTTTGTAGTTAAAGATTGGTGGAGCTCAGGTTGCGAGAATTAGTTTTGATGCGAATTCAATTGTTGGTTTGTTAATCTTTTTGAGATAAATTTTAATATTTTTGAAATTAGGATTCTCCTGGTATCCTACATGTTTGATGTTTTTCCTGTCCAAGATTCCAACTTTGTGAACTTTAACTAGAAATATGATCAAACGAAGTGTAATCAAAGTCGGATCGAAAGGAAAATAACAACAACAAAATAGCAAGATAAATGAAGCAAATTGTAGTAGTTAAAGGGTGGGATTGAAATGCATCTTTCTTCTCTAAATAATGGTGGCAGTGAGTGAGTCTGTGCGCACGCTAAAACTAATCCTCTTTTTTAAAAATGTTATCATATTCTATGTTTCTCGGACTCTTCAAAAATGTTGTAGTTTGCGTGTCAGATCCTTCAAACTTAGTATACTCTTGGAGGATCCAATAAGGGTGCAATAACACTTTTGGAGAGTCCGAGTAACATAGATCATATTACCAGTAGATAACTAGAATTGTAACTTAAATGTACTTTTGTTTAGTAAAAGATGAATTAGTCTAAGCCATATCTAGTTCTGGGAGTTAGTCGAATCGACTTTCAACAAGGGGAAATGTTTAAAAAAATATCTTCGGTTAAAAGGGGTGCGTGTGTGTGTGTGCAAATCACATTATTTTCAACATTTGGTAAATCATAGGAAAGGATTTTTATGTTTGATTCTCCAAGTAGCAATGGAGTCGAACAAATTTGGGAGGGAGAGAGAGGGCGTACAAATTTTATCTAATTCCTGAATGTGATGTTTATAATGTTGAATATTGGTTTGAGATAATAACTTTGTGAAATTTGGGTTTTTGTGATGGCATATTAGGTGGTGAAGATTCTTGCAGCTGCTGATCCGTCAGTGAGTGGTATAAATAGTGGTGATGAAGAAGGTTGGGTGCCGTTGCATTCTGCCGCAAGCAGTGGTAATGTGGAAATTGTGGAGATTTTGCTTAGCAGAGGTGAGTAGTATAACAATTTGTTGTGTTGAACGTTTTATCTATGTCATATAAAGATTTCATCTTTACAAACTTCATCAAAAAGATTCTATCTTTACCAAACTGGAAATGATATGTCAAAATGAAAGTAAAAAATCCAAAAGATCTCTATGCATTTAAGAGAACAGTTTTCTATAGAATTATCAGCCTTTTGGAGTTTAATTAATTTGTGTGCAATAATTCCACTGACTTGTGGATTTCAAGGAGCAGAAGAAATTGATTGATGTGCTAAACACATATGATCGTGGATGTACAGTTAAAAATATAGCATTACTGAATTTTCTCTATGTTCATTGCTATATCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTAGTAGATCGAGCTGGCCATTACTTATAAAAGCTATTGGACATCAATGGTATTGTGTTTTAATTTATATACAAATCTTTTGCATTTTGCCTACCTGACATTGCAGTGGTCAGCCATTTAGTAATCAAATGATTCACAACGGAAACTGAATTGTAATAATTTGTGTTTTTGTGCCTGTCCACCTACGCATTCGTGTATTTCACTAACCTGTGAAAGTGTACCGGCTTTTGTCAGCATTGTTTAGAGAGCTTCAATGAACTCAGTTCACTCATTTTAATAGTTGAGCCATGAATTTGTGATGGCAAATGTTAATATATTTGTAAATAGGGGCTGATGTAAATCTGAAAAATGATGGTGGCCGCACTGCTCTTCATTATGCTGCTAGCAAGGGTCAAGTGAAAATAGCTGAACTTTTGATTTCACGTGGTGCTAAGATCAATGCAAAAGACAAGGCTTGTAATCTTATGCTTTGGACTACTCATCTCCTTGAAAAGCTTATTATATTTGATAGTTAGGGTGTTCATAATTTCTTGCTGTTGGTTTATTAATATGTGATATAGGTAGGATGCACCCCATTGCATCGTGCAGCTAGCACGGGGAACTCTCAGCTGTGTGAACTATTAGTTGAGGAAGGCGCTGAAGTTGATGAAGTTGACAAGGCAGGGGAAACACCTCTGATGACTGCTGTTGTATGCGGCAATAAAGAGGTACATAAATCTTGTTCATGAGCTATATAGATCGAAAGGACCATAAATATCTTACAAGTGAACAGTTCACAGATCCCACCCCTCTTTTTTTTTCTTGTGTGTTTGTGAGATAAGGAGATTGTCTTTTCTTGAACACTCATTCTGGGACAAAACAGCAACACATTGTGATTATGTTTACTCGACAGGTAGCTTTGCTCCTCATAAGACATGGAGCAGATGTTGACATTGAGGACAAGGAAGGGTACACTGTTCTTGGTCGAGCTTCTAATGATCTTCGTCCAGTATTAGTCGATGCTGCAAAGATGATGCTCGAAGGATAAACTCCACGACCTCATGATAGCTCATCAGAAAACGCAAGCCAACTCTGTAAATGTTCAACCTGAAGCGTGCTCAACTAGACACATACCGATGAATATTCTGGAACTATTTAGTTGTAGGGC</genome_strand>
        <mrna_strand>GCCAGCTAAAACCCTACTGATACCCTACCGTCCGTACAAATCCCGGCGTAAATGGAACCGGAAAAATCCTCAGCTCAAATCAAAGACAAAGATTTGTTCAAAGCCGCTGAATCTGGTGATTCATCGCTCTTCAAATCACTTCCTGAAGAACAACTCCTCAAATCCCTCTCTCTCCGTAATGAAGATGATCGTTCTCTCCTTCACGTTGCCGTCTCTTTCGGACACTCTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAGATTCTTGCAGCTGCTGATCCGTCAGTGAGTGGTATAAATAGTGGTGATGAAGAAGGTTGGGTGCCGTTGCATTCTGCCGCAAGCAGTGGTAATGTGGAAATTGTGGAGATTTTGCTTAGCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTGATGTAAATCTGAAAAATGATGGTGGCCGCACTGCTCTTCATTATGCTGCTAGCAAGGGTCAAGTGAAAATAGCTGAACTTTTGATTTCACGTGGTGCTAAGATCAATGCAAAAGACAAG............................................................................................................GTAGGATGCACCCCATTGCATCGTGCAGCTAGCACGGGGAACTCTCAGCTGTGTGAACTATTAGTTGAGGAAGGCGCTGAAGTTGATGAAGTTGACAAGGCAGGGGAAACACCTCTGATGACTGCTGTTGTATGCGGCAATAAAGAG.........................................................................................................................................................................................GTAGCTTTGCTCCTCATAAGACATGGAGCAGATGTTGACATTGAGGACAAGGAAGGGTACACTGTTCTTGGTCGAGCTTCTAATGATCTTCGTCCAGTATTAGTCGATGCTGCAAAGATGATGCTCGAAGGATAAACTCCACGACCTCATGATAGCTCATCAGAAAACGCAAGCCAACTCTGTAAATGGNTCACCTGAAGCGTGCTCAACTAGACACATACCGATGAATATTCTGGAACTATTTAGGTGTAGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698331" ref_strand="+" ref_description="SGN-E698331 [FA05DH09]">
      <seq>gtcagctaaaaccctactgataccctaccgtccgtacaaatcccggcgtaaatggaaccggaaaaatcctcagctcaaatcaaagacaaagatttgttcaaagccgctgaatctggtgattcatcgctcttcaaatcacttcctgaagaacaactcctcaaatccctctctctccgtaatgaagatgatcgttctctccttcacgttgccgtctctttcggacactctgaggtggtgaagattcttgcagctgctgatccgtcagtgagtggtataaatagtggtgatgaagaaggttgggtgccgttgcattctgccgcaagcagtggtaatgtggaaattgtggagattttgcttagcagaggggctgatgtaaatctgaaaaatgatggtggccgcactgctcttcattatgctgctagcaagggtcaagtgaaaatagctgaacttttgatttcacgtggtgctaagatcaatgcaaaagacaaggtaggatgcaccccattgcatcgtgcagctagcacggggaactctcagctgtgtgaactattagttgaggaaggcgctgaagttgatgaagttgacaaggcaggggaaacacctctgatgactgctgttgtatgcggcaataaagaggtagctttgctcctcataagacatggagcagatgttgacattgaggacaaggaagggtacactgttcttggtcgagcttctaatgatcttcgtccagtattagtcgatgctgcaaagatgatgctcgaaggataaactccacgacctcatgatagctcatcagaaaacgcaagcccactctgtaaatgttcaacctgaagcgtgctcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="64749" stop="68194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65049" g_stop="65279" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65280" i_stop="66285" i_length="1006">
            <donor d_prob="0.680" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66286" g_stop="66418" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="364" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66419" i_stop="67118" i_length="700">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67119" g_stop="67243" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="489" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67244" i_stop="67351" i_length="108">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67352" g_stop="67498" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="636" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67499" i_stop="67683" i_length="185">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67684" g_stop="67894" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="847" r_length="211" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E698331" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65049" e_stop="65279"/>
          <exon e_start="66286" e_stop="66418"/>
          <exon e_start="67119" e_stop="67243"/>
          <exon e_start="67352" e_stop="67498"/>
          <exon e_start="67684" e_stop="67894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGCTAAAACCCTACTGATACCCTACCGTCCGTACAAATCCCGGCGTAAATGGAACCGGAAAAATCCTCAGCTCAAATCAAAGACAAAGATTTGTTCAAAGCCGCTGAATCTGGTGATTCATCGCTCTTCAAATCACTTCCTGAAGAACAACTCCTCAAATCCCTCTCTCTCCGTAATGAAGATGATCGTTCTCTCCTTCACGTTGCCGTCTCTTTCGGACACTCTGAGGTAATTTCAGCGAAAACGAGTAAAAATTGTGCTTCGTGTAACTCCTTCCGCAAAAAATTATACTGTATATACAATGTTAAAATTATTTTTATGTATATAGAGTAGATGTTGAATTCCCTTGGATCGGGATTTTGTAGTTAAAGATTGGTGGAGCTCAGGTTGCGAGAATTAGTTTTGATGCGAATTCAATTGTTGGTTTGTTAATCTTTTTGAGATAAATTTTAATATTTTTGAAATTAGGATTCTCCTGGTATCCTACATGTTTGATGTTTTTCCTGTCCAAGATTCCAACTTTGTGAACTTTAACTAGAAATATGATCAAACGAAGTGTAATCAAAGTCGGATCGAAAGGAAAATAACAACAACAAAATAGCAAGATAAATGAAGCAAATTGTAGTAGTTAAAGGGTGGGATTGAAATGCATCTTTCTTCTCTAAATAATGGTGGCAGTGAGTGAGTCTGTGCGCACGCTAAAACTAATCCTCTTTTTTAAAAATGTTATCATATTCTATGTTTCTCGGACTCTTCAAAAATGTTGTAGTTTGCGTGTCAGATCCTTCAAACTTAGTATACTCTTGGAGGATCCAATAAGGGTGCAATAACACTTTTGGAGAGTCCGAGTAACATAGATCATATTACCAGTAGATAACTAGAATTGTAACTTAAATGTACTTTTGTTTAGTAAAAGATGAATTAGTCTAAGCCATATCTAGTTCTGGGAGTTAGTCGAATCGACTTTCAACAAGGGGAAATGTTTAAAAAAATATCTTCGGTTAAAAGGGGTGCGTGTGTGTGTGTGCAAATCACATTATTTTCAACATTTGGTAAATCATAGGAAAGGATTTTTATGTTTGATTCTCCAAGTAGCAATGGAGTCGAACAAATTTGGGAGGGAGAGAGAGGGCGTACAAATTTTATCTAATTCCTGAATGTGATGTTTATAATGTTGAATATTGGTTTGAGATAATAACTTTGTGAAATTTGGGTTTTTGTGATGGCATATTAGGTGGTGAAGATTCTTGCAGCTGCTGATCCGTCAGTGAGTGGTATAAATAGTGGTGATGAAGAAGGTTGGGTGCCGTTGCATTCTGCCGCAAGCAGTGGTAATGTGGAAATTGTGGAGATTTTGCTTAGCAGAGGTGAGTAGTATAACAATTTGTTGTGTTGAACGTTTTATCTATGTCATATAAAGATTTCATCTTTACAAACTTCATCAAAAAGATTCTATCTTTACCAAACTGGAAATGATATGTCAAAATGAAAGTAAAAAATCCAAAAGATCTCTATGCATTTAAGAGAACAGTTTTCTATAGAATTATCAGCCTTTTGGAGTTTAATTAATTTGTGTGCAATAATTCCACTGACTTGTGGATTTCAAGGAGCAGAAGAAATTGATTGATGTGCTAAACACATATGATCGTGGATGTACAGTTAAAAATATAGCATTACTGAATTTTCTCTATGTTCATTGCTATATCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTAGTAGATCGAGCTGGCCATTACTTATAAAAGCTATTGGACATCAATGGTATTGTGTTTTAATTTATATACAAATCTTTTGCATTTTGCCTACCTGACATTGCAGTGGTCAGCCATTTAGTAATCAAATGATTCACAACGGAAACTGAATTGTAATAATTTGTGTTTTTGTGCCTGTCCACCTACGCATTCGTGTATTTCACTAACCTGTGAAAGTGTACCGGCTTTTGTCAGCATTGTTTAGAGAGCTTCAATGAACTCAGTTCACTCATTTTAATAGTTGAGCCATGAATTTGTGATGGCAAATGTTAATATATTTGTAAATAGGGGCTGATGTAAATCTGAAAAATGATGGTGGCCGCACTGCTCTTCATTATGCTGCTAGCAAGGGTCAAGTGAAAATAGCTGAACTTTTGATTTCACGTGGTGCTAAGATCAATGCAAAAGACAAGGCTTGTAATCTTATGCTTTGGACTACTCATCTCCTTGAAAAGCTTATTATATTTGATAGTTAGGGTGTTCATAATTTCTTGCTGTTGGTTTATTAATATGTGATATAGGTAGGATGCACCCCATTGCATCGTGCAGCTAGCACGGGGAACTCTCAGCTGTGTGAACTATTAGTTGAGGAAGGCGCTGAAGTTGATGAAGTTGACAAGGCAGGGGAAACACCTCTGATGACTGCTGTTGTATGCGGCAATAAAGAGGTACATAAATCTTGTTCATGAGCTATATAGATCGAAAGGACCATAAATATCTTACAAGTGAACAGTTCACAGATCCCACCCCTCTTTTTTTTTCTTGTGTGTTTGTGAGATAAGGAGATTGTCTTTTCTTGAACACTCATTCTGGGACAAAACAGCAACACATTGTGATTATGTTTACTCGACAGGTAGCTTTGCTCCTCATAAGACATGGAGCAGATGTTGACATTGAGGACAAGGAAGGGTACACTGTTCTTGGTCGAGCTTCTAATGATCTTCGTCCAGTATTAGTCGATGCTGCAAAGATGATGCTCGAAGGATAAACTCCACGACCTCATGATAGCTCATCAGAAAACGCAAGCCAACTCTGTAAATGTTCAACCTGAAGCGTGCTCAACT</genome_strand>
        <mrna_strand>GTCAGCTAAAACCCTACTGATACCCTACCGTCCGTACAAATCCCGGCGTAAATGGAACCGGAAAAATCCTCAGCTCAAATCAAAGACAAAGATTTGTTCAAAGCCGCTGAATCTGGTGATTCATCGCTCTTCAAATCACTTCCTGAAGAACAACTCCTCAAATCCCTCTCTCTCCGTAATGAAGATGATCGTTCTCTCCTTCACGTTGCCGTCTCTTTCGGACACTCTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAGATTCTTGCAGCTGCTGATCCGTCAGTGAGTGGTATAAATAGTGGTGATGAAGAAGGTTGGGTGCCGTTGCATTCTGCCGCAAGCAGTGGTAATGTGGAAATTGTGGAGATTTTGCTTAGCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTGATGTAAATCTGAAAAATGATGGTGGCCGCACTGCTCTTCATTATGCTGCTAGCAAGGGTCAAGTGAAAATAGCTGAACTTTTGATTTCACGTGGTGCTAAGATCAATGCAAAAGACAAG............................................................................................................GTAGGATGCACCCCATTGCATCGTGCAGCTAGCACGGGGAACTCTCAGCTGTGTGAACTATTAGTTGAGGAAGGCGCTGAAGTTGATGAAGTTGACAAGGCAGGGGAAACACCTCTGATGACTGCTGTTGTATGCGGCAATAAAGAG.........................................................................................................................................................................................GTAGCTTTGCTCCTCATAAGACATGGAGCAGATGTTGACATTGAGGACAAGGAAGGGTACACTGTTCTTGGTCGAGCTTCTAATGATCTTCGTCCAGTATTAGTCGATGCTGCAAAGATGATGCTCGAAGGATAAACTCCACGACCTCATGATAGCTCATCAGAAAACGCAAGCCCACTCTGTAAATGTTCAACCTGAAGCGTGCTCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697251" ref_strand="+" ref_description="SGN-E697251 [FA02AA07]">
      <seq>ctaaaaccctactgataccctaccgtccgtacaaatcccggcgtaaatggaaccggaaaaatcctcagctcaaatcaaagacaaagatttgttcaaagccgctgaatctggtgattcatcgctcttcaaatcacttcctgaagaacaactcctcaaatccctctctctccgtaatgaagatgatcgttctctccttcacgttgccgtctctttcggacactctgaggtggtgaagattcttgcagctgctgatccgtcagtgagtggtataaatagtggtgatgaagaaggttgggtgccgttgcattctgccgcaagcagtggtaatgtggaaattgtggagattttgcttagcagaggggctgatgtaaatctgaaaaatgatggtggccgcactgctcttcattatgctgctagcaagggtcaagtgaaaatagctgaacttttgatttcacgtggtgctaagatcaatgcaaaagacaaggtaggatgcaccccattgcatcgtgcagctagcacggggaactctcagctgtgtgaactattagttgaggaaggcgctgaagttgatgaagttgacaaggcaggggaaacacctctgatgactgctgttgtatgcggcaataaagaggtagctttgctcctcataagacatggagcagatgttgacattgaggacaaggaagggtacactgttcttggtcgagcttctaatgatcttcgtccagtattagtcgatgctgcaaagatgatgctcgaaggataaactccacgacctcatgatagctcatcagaaaacgcaagccaactctgtaaatgttcaacctgaagcgtgctcaactaaaaccataccgatgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="64754" stop="68213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65054" g_stop="65279" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65280" i_stop="66285" i_length="1006">
            <donor d_prob="0.680" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66286" g_stop="66418" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="359" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66419" i_stop="67118" i_length="700">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67119" g_stop="67243" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="484" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67244" i_stop="67351" i_length="108">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67352" g_stop="67498" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="631" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67499" i_stop="67683" i_length="185">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67684" g_stop="67913" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="861" r_length="230" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E697251" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65054" e_stop="65279"/>
          <exon e_start="66286" e_stop="66418"/>
          <exon e_start="67119" e_stop="67243"/>
          <exon e_start="67352" e_stop="67498"/>
          <exon e_start="67684" e_stop="67913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACCCTACTGATACCCTACCGTCCGTACAAATCCCGGCGTAAATGGAACCGGAAAAATCCTCAGCTCAAATCAAAGACAAAGATTTGTTCAAAGCCGCTGAATCTGGTGATTCATCGCTCTTCAAATCACTTCCTGAAGAACAACTCCTCAAATCCCTCTCTCTCCGTAATGAAGATGATCGTTCTCTCCTTCACGTTGCCGTCTCTTTCGGACACTCTGAGGTAATTTCAGCGAAAACGAGTAAAAATTGTGCTTCGTGTAACTCCTTCCGCAAAAAATTATACTGTATATACAATGTTAAAATTATTTTTATGTATATAGAGTAGATGTTGAATTCCCTTGGATCGGGATTTTGTAGTTAAAGATTGGTGGAGCTCAGGTTGCGAGAATTAGTTTTGATGCGAATTCAATTGTTGGTTTGTTAATCTTTTTGAGATAAATTTTAATATTTTTGAAATTAGGATTCTCCTGGTATCCTACATGTTTGATGTTTTTCCTGTCCAAGATTCCAACTTTGTGAACTTTAACTAGAAATATGATCAAACGAAGTGTAATCAAAGTCGGATCGAAAGGAAAATAACAACAACAAAATAGCAAGATAAATGAAGCAAATTGTAGTAGTTAAAGGGTGGGATTGAAATGCATCTTTCTTCTCTAAATAATGGTGGCAGTGAGTGAGTCTGTGCGCACGCTAAAACTAATCCTCTTTTTTAAAAATGTTATCATATTCTATGTTTCTCGGACTCTTCAAAAATGTTGTAGTTTGCGTGTCAGATCCTTCAAACTTAGTATACTCTTGGAGGATCCAATAAGGGTGCAATAACACTTTTGGAGAGTCCGAGTAACATAGATCATATTACCAGTAGATAACTAGAATTGTAACTTAAATGTACTTTTGTTTAGTAAAAGATGAATTAGTCTAAGCCATATCTAGTTCTGGGAGTTAGTCGAATCGACTTTCAACAAGGGGAAATGTTTAAAAAAATATCTTCGGTTAAAAGGGGTGCGTGTGTGTGTGTGCAAATCACATTATTTTCAACATTTGGTAAATCATAGGAAAGGATTTTTATGTTTGATTCTCCAAGTAGCAATGGAGTCGAACAAATTTGGGAGGGAGAGAGAGGGCGTACAAATTTTATCTAATTCCTGAATGTGATGTTTATAATGTTGAATATTGGTTTGAGATAATAACTTTGTGAAATTTGGGTTTTTGTGATGGCATATTAGGTGGTGAAGATTCTTGCAGCTGCTGATCCGTCAGTGAGTGGTATAAATAGTGGTGATGAAGAAGGTTGGGTGCCGTTGCATTCTGCCGCAAGCAGTGGTAATGTGGAAATTGTGGAGATTTTGCTTAGCAGAGGTGAGTAGTATAACAATTTGTTGTGTTGAACGTTTTATCTATGTCATATAAAGATTTCATCTTTACAAACTTCATCAAAAAGATTCTATCTTTACCAAACTGGAAATGATATGTCAAAATGAAAGTAAAAAATCCAAAAGATCTCTATGCATTTAAGAGAACAGTTTTCTATAGAATTATCAGCCTTTTGGAGTTTAATTAATTTGTGTGCAATAATTCCACTGACTTGTGGATTTCAAGGAGCAGAAGAAATTGATTGATGTGCTAAACACATATGATCGTGGATGTACAGTTAAAAATATAGCATTACTGAATTTTCTCTATGTTCATTGCTATATCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTAGTAGATCGAGCTGGCCATTACTTATAAAAGCTATTGGACATCAATGGTATTGTGTTTTAATTTATATACAAATCTTTTGCATTTTGCCTACCTGACATTGCAGTGGTCAGCCATTTAGTAATCAAATGATTCACAACGGAAACTGAATTGTAATAATTTGTGTTTTTGTGCCTGTCCACCTACGCATTCGTGTATTTCACTAACCTGTGAAAGTGTACCGGCTTTTGTCAGCATTGTTTAGAGAGCTTCAATGAACTCAGTTCACTCATTTTAATAGTTGAGCCATGAATTTGTGATGGCAAATGTTAATATATTTGTAAATAGGGGCTGATGTAAATCTGAAAAATGATGGTGGCCGCACTGCTCTTCATTATGCTGCTAGCAAGGGTCAAGTGAAAATAGCTGAACTTTTGATTTCACGTGGTGCTAAGATCAATGCAAAAGACAAGGCTTGTAATCTTATGCTTTGGACTACTCATCTCCTTGAAAAGCTTATTATATTTGATAGTTAGGGTGTTCATAATTTCTTGCTGTTGGTTTATTAATATGTGATATAGGTAGGATGCACCCCATTGCATCGTGCAGCTAGCACGGGGAACTCTCAGCTGTGTGAACTATTAGTTGAGGAAGGCGCTGAAGTTGATGAAGTTGACAAGGCAGGGGAAACACCTCTGATGACTGCTGTTGTATGCGGCAATAAAGAGGTACATAAATCTTGTTCATGAGCTATATAGATCGAAAGGACCATAAATATCTTACAAGTGAACAGTTCACAGATCCCACCCCTCTTTTTTTTTCTTGTGTGTTTGTGAGATAAGGAGATTGTCTTTTCTTGAACACTCATTCTGGGACAAAACAGCAACACATTGTGATTATGTTTACTCGACAGGTAGCTTTGCTCCTCATAAGACATGGAGCAGATGTTGACATTGAGGACAAGGAAGGGTACACTGTTCTTGGTCGAGCTTCTAATGATCTTCGTCCAGTATTAGTCGATGCTGCAAAGATGATGCTCGAAGGATAAACTCCACGACCTCATGATAGCTCATCAGAAAACGCAAGCCAACTCTGTAAATGTTCAACCTGAAGCGTGCTCAACTAGACACATACCGATGAATA</genome_strand>
        <mrna_strand>CTAAAACCCTACTGATACCCTACCGTCCGTACAAATCCCGGCGTAAATGGAACCGGAAAAATCCTCAGCTCAAATCAAAGACAAAGATTTGTTCAAAGCCGCTGAATCTGGTGATTCATCGCTCTTCAAATCACTTCCTGAAGAACAACTCCTCAAATCCCTCTCTCTCCGTAATGAAGATGATCGTTCTCTCCTTCACGTTGCCGTCTCTTTCGGACACTCTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAGATTCTTGCAGCTGCTGATCCGTCAGTGAGTGGTATAAATAGTGGTGATGAAGAAGGTTGGGTGCCGTTGCATTCTGCCGCAAGCAGTGGTAATGTGGAAATTGTGGAGATTTTGCTTAGCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTGATGTAAATCTGAAAAATGATGGTGGCCGCACTGCTCTTCATTATGCTGCTAGCAAGGGTCAAGTGAAAATAGCTGAACTTTTGATTTCACGTGGTGCTAAGATCAATGCAAAAGACAAG............................................................................................................GTAGGATGCACCCCATTGCATCGTGCAGCTAGCACGGGGAACTCTCAGCTGTGTGAACTATTAGTTGAGGAAGGCGCTGAAGTTGATGAAGTTGACAAGGCAGGGGAAACACCTCTGATGACTGCTGTTGTATGCGGCAATAAAGAG.........................................................................................................................................................................................GTAGCTTTGCTCCTCATAAGACATGGAGCAGATGTTGACATTGAGGACAAGGAAGGGTACACTGTTCTTGGTCGAGCTTCTAATGATCTTCGTCCAGTATTAGTCGATGCTGCAAAGATGATGCTCGAAGGATAAACTCCACGACCTCATGATAGCTCATCAGAAAACGCAAGCCAACTCTGTAAATGTTCAACCTGAAGCGTGCTCAACTAAAACCATACCGATGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746652" ref_strand="+" ref_description="SGN-E746652 [GI|47104098]">
      <seq>gttttcttgtgcttccctatcttcttcttctactactactttttggtctagtggaagcagagcaaaagcagaattatgactatggctactcctatttctccaatgaagcaattcccttcaactgctcttcaaccattcccatcaatctttcaaagaaaaccagtactaatctcttcacttagaaaaactcctcatcttttctcttattcatctcccaagtcattcgttccgctttctgcttgccttgctgttcttctatggtcctctcctgctaatgctggatttctttcgggttatactggtatagaatcagttcctggccctgaattacctaagattgagtttcttaatcgttggaacgataataatcagaaaaagtatgcagaactcgatgaaaaattcaaagagtcgcctttgctcaaacagttactcgaaaaatccaagcaaaataaagagaagaacaaaaggtcaattgaagacaagtattgtttacgcggagctgaatggggagttggggattgctcaacagcaggaatgacaccagaagacagagatagcttcattgccatgttgaagcacaaggctggtgtagaatgaacgcgcaattatgtactactctttatcgatgatgctggtttcaatttccgaatgcagagagtgaagattgaagcgtaatgctgaaaattcgcgataggagacggggagtttgattgagccttataacctgttagtattagcataagcacaagaacatgtcaaaagggacatttcttctattgttctatagcttgtaaatacattgcactagtaaattatgagcttgagagtggcatattgatatcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="68656" stop="70751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68956" g_stop="69226" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69227" i_stop="69621" i_length="395">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69622" g_stop="69711" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="361" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69712" i_stop="69790" i_length="79">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69791" g_stop="69887" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="458" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69888" i_stop="70067" i_length="180">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70068" g_stop="70449" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="840" r_length="382" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="843" polyA_stop="860"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E746652" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68956" e_stop="69226"/>
          <exon e_start="69622" e_stop="69711"/>
          <exon e_start="69791" e_stop="69887"/>
          <exon e_start="70068" e_stop="70449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTTGTGCTTCCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCAGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTGGTAATGTTATCTTGATCAATCTTTTTTACTTTGCCCCTTTAGCCTTTTCTTATGTTTGTTTACATAGTCTTGATGTTATATGTATTGAGCTATGACTATAGAAGCGGATCTAGAATTTGAATTTCAGGACGTAACATAAGCATATACATTTTGTCCATTCAAGAGGAGTATTATTCTCTTTGATCCATCGTCGTGTAAGTGAGGAATGTCAGTCATCATAGTCCCAACTTAAAACTATTAGTTTTTTCGTCGAACTTGTGTATTCAAGGGATATAGAGGGTTCATATTCATTAGGAAATGATAAACTGTTTTGTTTATCTAATTTAGTTTCAATACAATTTATTCGTTTTCAATGTTTAGATACTAATAAAGATGTCATTCTGTTCCAATTGCAGCTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACGGTATTATCTCAAACTAACATTGTAAATAAAACTCCGCTAACATTTTGCAGTAAGATCATGATATGCTCTTTTGTTGCAGATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAAGTAAGTTTTCTTTCATCTCGAATGATTAGCTTTTGAATACACACACGAGATATCATTTCTGTAGTATGATTTTTCGACGAAGGAGTGAAAATTGATGATGCACTTTCATATGTTGTCCTTTTAGTGATCACACCGATCAAGTACCAAACAAATGGTAATTTTTCGTGTTTTTTTTGTCAGGAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTTGAAGCAGAAGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTCTTTATCGATGATGCTGGTTTCAATTTCCGAATGCAGAGAGTGAAGATTGAAGCGTAATGCTGAAAATTCGCGATAGGAGACGGGGAGTTTGATTGAGCCTTATAACCTGTTAGTATTAGCATAAGCACAAGAACATGTCAAAAGGGACATTTCTTCTATTGTTCTATAGCTTGTAAATACATTGCACTAGTAAATTATGAGCTTGAGAGTGGCATATTGATA</genome_strand>
        <mrna_strand>GTTTTCTTGTGCTTCCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCAGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................CTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACG...............................................................................ATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTCAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAA....................................................................................................................................................................................GAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGGGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTTGAAGCACAAGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTCTTTATCGATGATGCTGGTTTCAATTTCCGAATGCAGAGAGTGAAGATTGAAGCGTAATGCTGAAAATTCGCGATAGGAGACGGGGAGTTTGATTGAGCCTTATAACCTGTTAGTATTAGCATAAGCACAAGAACATGTCAAAAGGGACATTTCTTCTATTGTTCTATAGCTTGTAAATACATTGCACTAGTAAATTATGAGCTTGAGAGTGGCATATTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340972" ref_strand="+" ref_description="SGN-E340972 [cTOF-5-D13]">
      <seq>ttttcttgtgcttccctatcttcttcttctactactactttttggtctagtggaagcagagcaaaagcagaattatgactatggctactcctatttctccaatgaagcaattcccttcaactgctcttcaaccattcccatcaatctttcaaagaaaaccagtactaatctcttcacttagaaaaactcctcatcttttctcttattcatctcccaagtcattcgttccgctttctgcttgccttgctgttcttctatggtcctctcctgctaatgctggatttctttcgggttatactggtatagaatcagttcctggccctgaattacctaagattgagtttcttaatcgttggaacgataataatcagaaaaagtatgcagaactcgatgaaaaattcaaagagtcgcctttgcttaaacagttactcgaaaaatccaagcaaaataaagagaagaacaaaaggtcaattgaagacaagtattgtttacgcggagctgaatggggagttggagattgctcaacagcaggaatgacaccagaagacagagatagcttcattgccatgttgaagcagagggctggtgtagaatgaacgcgcaattatgtactactctttatcgatgatgctgggtttcaatttccgaatgcagagagtgaagattgaaagcgtatgctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="68657" stop="70592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68957" g_stop="69226" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69227" i_stop="69621" i_length="395">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69622" g_stop="69711" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="360" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69712" i_stop="69790" i_length="79">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69791" g_stop="69887" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="457" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69888" i_stop="70067" i_length="180">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70068" g_stop="70292" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="683" r_length="226" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E340972" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68957" e_stop="69226"/>
          <exon e_start="69622" e_stop="69711"/>
          <exon e_start="69791" e_stop="69887"/>
          <exon e_start="70068" e_stop="70292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTGTGCTTCCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCAGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTGGTAATGTTATCTTGATCAATCTTTTTTACTTTGCCCCTTTAGCCTTTTCTTATGTTTGTTTACATAGTCTTGATGTTATATGTATTGAGCTATGACTATAGAAGCGGATCTAGAATTTGAATTTCAGGACGTAACATAAGCATATACATTTTGTCCATTCAAGAGGAGTATTATTCTCTTTGATCCATCGTCGTGTAAGTGAGGAATGTCAGTCATCATAGTCCCAACTTAAAACTATTAGTTTTTTCGTCGAACTTGTGTATTCAAGGGATATAGAGGGTTCATATTCATTAGGAAATGATAAACTGTTTTGTTTATCTAATTTAGTTTCAATACAATTTATTCGTTTTCAATGTTTAGATACTAATAAAGATGTCATTCTGTTCCAATTGCAGCTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACGGTATTATCTCAAACTAACATTGTAAATAAAACTCCGCTAACATTTTGCAGTAAGATCATGATATGCTCTTTTGTTGCAGATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAAGTAAGTTTTCTTTCATCTCGAATGATTAGCTTTTGAATACACACACGAGATATCATTTCTGTAGTATGATTTTTCGACGAAGGAGTGAAAATTGATGATGCACTTTCATATGTTGTCCTTTTAGTGATCACACCGATCAAGTACCAAACAAATGGTAATTTTTCGTGTTTTTTTTGTCAGGAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTTGAAGCAGAAGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTCTTTATCGATGATGCT-GGTTTCAATTTCCGAATGCAGAGAGTGAAGATTG-AAGCGTAATGCTGAAA</genome_strand>
        <mrna_strand>TTTTCTTGTGCTTCCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCAGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................CTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACG...............................................................................ATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAA....................................................................................................................................................................................GAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTTGAAGCAGAGGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTCTTTATCGATGATGCTGGGTTTCAATTTCCGAATGCAGAGAGTGAAGATTGAAAGCGT-ATGCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373109" ref_strand="+" ref_description="SGN-E373109 [TUS-32-M9]">
      <seq>ttttcttgtgcttccctatcttcttcttctactactactttttggtctagtggaagcagagcaaaagcagaattatgactatggctactcctatttctccaatgaagcaattcccttcaactgctcttcaaccattcccatcaatctttcaaagaaaaccagtactaatctcttcacttagaaaaactcctcatcttttctcttattcatctcccaagtcattcgttccgctttctgcttgccttgctgttcttctatggtcctctcctgctaatgctggatttctttcgggttatactggtatagaatcagttcctggccctgaattacctaagattgagtttcttaatcgttggaacgataataatcagaaaaagtatgcagaactcgatgaaaaattcaaagagtcgcctttgctcaaacagttactcgaaaaatccaagcaaaataaagagaagaacaaaaggtcaattgaagacaagtattgtttacgcggagctgaatggggagttggggattgctcaacagcaggaatgacaccagaagacagagatagcttcattgccatgttgaagcacaaggctggtgtagaatgaacgcgcaattatgtactactctttatcgatgatgctggtttcaatttccgaatgcagagagtgaagattgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="68657" stop="70579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68957" g_stop="69226" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69227" i_stop="69621" i_length="395">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69622" g_stop="69711" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="360" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69712" i_stop="69790" i_length="79">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69791" g_stop="69887" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="457" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69888" i_stop="70067" i_length="180">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70068" g_stop="70279" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="669" r_length="212" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E373109" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68957" e_stop="69226"/>
          <exon e_start="69622" e_stop="69711"/>
          <exon e_start="69791" e_stop="69887"/>
          <exon e_start="70068" e_stop="70279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTGTGCTTCCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCAGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTGGTAATGTTATCTTGATCAATCTTTTTTACTTTGCCCCTTTAGCCTTTTCTTATGTTTGTTTACATAGTCTTGATGTTATATGTATTGAGCTATGACTATAGAAGCGGATCTAGAATTTGAATTTCAGGACGTAACATAAGCATATACATTTTGTCCATTCAAGAGGAGTATTATTCTCTTTGATCCATCGTCGTGTAAGTGAGGAATGTCAGTCATCATAGTCCCAACTTAAAACTATTAGTTTTTTCGTCGAACTTGTGTATTCAAGGGATATAGAGGGTTCATATTCATTAGGAAATGATAAACTGTTTTGTTTATCTAATTTAGTTTCAATACAATTTATTCGTTTTCAATGTTTAGATACTAATAAAGATGTCATTCTGTTCCAATTGCAGCTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACGGTATTATCTCAAACTAACATTGTAAATAAAACTCCGCTAACATTTTGCAGTAAGATCATGATATGCTCTTTTGTTGCAGATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAAGTAAGTTTTCTTTCATCTCGAATGATTAGCTTTTGAATACACACACGAGATATCATTTCTGTAGTATGATTTTTCGACGAAGGAGTGAAAATTGATGATGCACTTTCATATGTTGTCCTTTTAGTGATCACACCGATCAAGTACCAAACAAATGGTAATTTTTCGTGTTTTTTTTGTCAGGAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTTGAAGCAGAAGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTCTTTATCGATGATGCTGGTTTCAATTTCCGAATGCAGAGAGTGAAGATTGAAG</genome_strand>
        <mrna_strand>TTTTCTTGTGCTTCCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCAGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................CTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACG...............................................................................ATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTCAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAA....................................................................................................................................................................................GAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGGGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTTGAAGCACAAGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTCTTTATCGATGATGCTGGTTTCAATTTCCGAATGCAGAGAGTGAAGATTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291266" ref_strand="+" ref_description="SGN-E291266 [cLET-2-A5]">
      <seq>ttttcttgtgcttccctatcttcttcttctactactactttttggtctagtggaagcagagcaaaagcagaattatgactatggctactcctatttctccaatgaagcaattcccttcaactgctcttcaaccattcccatcaatctttcaaagaaaaccagtactaatctcttcacttagaaaaactcctcatcttttctcttattcatctcccaagtcattcgttccgctttctgcttgccttgctgttcttctatggtcctctcctgctaatgctggatttctttcgggttatactggtatagaatcagttcctggccctgaattacctaagattgagtttcttaatcgttggaacgataataatcagaaaaagtatgcagaactcgatgaaaaattcaaagagtcgcctttgctcaaacagttactcgaaaaatccaagcaaaataaagagaagaacaaaaggtcaattgaagacaagtattgtttacgcggagctgaatggggagttggggattgctcaacagcaggaatgacaccagaagacagagatagcttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="68657" stop="70473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68957" g_stop="69226" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69227" i_stop="69621" i_length="395">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69622" g_stop="69711" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="360" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69712" i_stop="69790" i_length="79">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69791" g_stop="69887" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="457" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69888" i_stop="70067" i_length="180">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70068" g_stop="70173" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="563" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E291266" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68957" e_stop="69226"/>
          <exon e_start="69622" e_stop="69711"/>
          <exon e_start="69791" e_stop="69887"/>
          <exon e_start="70068" e_stop="70173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTGTGCTTCCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCAGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTGGTAATGTTATCTTGATCAATCTTTTTTACTTTGCCCCTTTAGCCTTTTCTTATGTTTGTTTACATAGTCTTGATGTTATATGTATTGAGCTATGACTATAGAAGCGGATCTAGAATTTGAATTTCAGGACGTAACATAAGCATATACATTTTGTCCATTCAAGAGGAGTATTATTCTCTTTGATCCATCGTCGTGTAAGTGAGGAATGTCAGTCATCATAGTCCCAACTTAAAACTATTAGTTTTTTCGTCGAACTTGTGTATTCAAGGGATATAGAGGGTTCATATTCATTAGGAAATGATAAACTGTTTTGTTTATCTAATTTAGTTTCAATACAATTTATTCGTTTTCAATGTTTAGATACTAATAAAGATGTCATTCTGTTCCAATTGCAGCTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACGGTATTATCTCAAACTAACATTGTAAATAAAACTCCGCTAACATTTTGCAGTAAGATCATGATATGCTCTTTTGTTGCAGATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAAGTAAGTTTTCTTTCATCTCGAATGATTAGCTTTTGAATACACACACGAGATATCATTTCTGTAGTATGATTTTTCGACGAAGGAGTGAAAATTGATGATGCACTTTCATATGTTGTCCTTTTAGTGATCACACCGATCAAGTACCAAACAAATGGTAATTTTTCGTGTTTTTTTTGTCAGGAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATT</genome_strand>
        <mrna_strand>TTTTCTTGTGCTTCCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCAGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................CTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACG...............................................................................ATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTCAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAA....................................................................................................................................................................................GAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGGGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293940" ref_strand="+" ref_description="SGN-E293940 [cLET-13-M8]">
      <seq>ttttcttgtgcttccctatcttcttcttctactactactttttggtctagtggaagcagagcaaaagcagaactatgactatggctactcctatttctccgatgaagcaattcccttcaactgctctgcaaccattcccatcaatctttcaaagaaaaccagtactaatctcttcacttagaaaaactcctcatcttttctcttattcatctaccaagtcattcgttccgctttctgcttgccttgctgttcttctatggacctctcctgctaatgctggatttctttcgggttatactggtatagaatcagttcctggccctgaattacctaagattgagtttcttaatcgctggaacgataataatcagaaaaagtatgcacaactcgatcaaaaattcagagagtcgcctttgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="68657" stop="70148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68957" g_stop="69226" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69227" i_stop="69621" i_length="395">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69622" g_stop="69711" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="360" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69712" i_stop="69790" i_length="79">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69791" g_stop="69849" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="419" r_length="59" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E293940" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68957" e_stop="69226"/>
          <exon e_start="69622" e_stop="69711"/>
          <exon e_start="69791" e_stop="69849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTGTGCTTCCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCAGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTGGTAATGTTATCTTGATCAATCTTTTTTACTTTGCCCCTTTAGCCTTTTCTTATGTTTGTTTACATAGTCTTGATGTTATATGTATTGAGCTATGACTATAGAAGCGGATCTAGAATTTGAATTTCAGGACGTAACATAAGCATATACATTTTGTCCATTCAAGAGGAGTATTATTCTCTTTGATCCATCGTCGTGTAAGTGAGGAATGTCAGTCATCATAGTCCCAACTTAAAACTATTAGTTTTTTCGTCGAACTTGTGTATTCAAGGGATATAGAGGGTTCATATTCATTAGGAAATGATAAACTGTTTTGTTTATCTAATTTAGTTTCAATACAATTTATTCGTTTTCAATGTTTAGATACTAATAAAGATGTCATTCTGTTCCAATTGCAGCTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACGGTATTATCTCAAACTAACATTGTAAATAAAACTCCGCTAACATTTTGCAGTAAGATCATGATATGCTCTTTTGTTGCAGATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTT</genome_strand>
        <mrna_strand>TTTTCTTGTGCTTCCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCAGAACTATGACTATGGCTACTCCTATTTCTCCGATGAAGCAATTCCCTTCAACTGCTCTGCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTACCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGACCTCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................CTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGCTGGAACG...............................................................................ATAATAATCAGAAAAAGTATGCACAACTCGATCAAAAATTCAGAGAGTCGCCTTTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291647" ref_strand="+" ref_description="SGN-E291647 [cLET-6-C1]">
      <seq>ttttcttgggcttccctatcttcttcttctactactactttttggtctagtggaagcagagcaaaagcagaattatgactatggctactcctatttctccaatgaagcaattcccttcaactgctcttcaaccattcccatcaatctttcaaagaaaaccagtactaatctcttcacttagaaaaactcctcatcttttctcttattcatctcccaagtcattcgttccgctttctgcttgccttgctggtcttctatgggcctctcctgctaatgctggatttctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="68657" stop="69940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68957" g_stop="69226" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69227" i_stop="69621" i_length="395">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69622" g_stop="69640" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="289" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E291647" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68957" e_stop="69226"/>
          <exon e_start="69622" e_stop="69640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTGTGCTTCCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCAGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTGGTAATGTTATCTTGATCAATCTTTTTTACTTTGCCCCTTTAGCCTTTTCTTATGTTTGTTTACATAGTCTTGATGTTATATGTATTGAGCTATGACTATAGAAGCGGATCTAGAATTTGAATTTCAGGACGTAACATAAGCATATACATTTTGTCCATTCAAGAGGAGTATTATTCTCTTTGATCCATCGTCGTGTAAGTGAGGAATGTCAGTCATCATAGTCCCAACTTAAAACTATTAGTTTTTTCGTCGAACTTGTGTATTCAAGGGATATAGAGGGTTCATATTCATTAGGAAATGATAAACTGTTTTGTTTATCTAATTTAGTTTCAATACAATTTATTCGTTTTCAATGTTTAGATACTAATAAAGATGTCATTCTGTTCCAATTGCAGCTAATGCTGGATTTCTTTC</genome_strand>
        <mrna_strand>TTTTCTTGGGCTTCCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCAGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGGTCTTCTATGGGCCTCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................CTAATGCTGGATTTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314285" ref_strand="+" ref_description="SGN-E314285 [cTOA-21-G13]">
      <seq>tgcttccctatcttcttcttctactactactttttggtctagtggaagcagagcaaaagcagaattatgactatggctactcctatttctccaatgaagcaattcccttcaactgctcttcaaccattcccatcaatctttcaaagaaaaccagtactaatctcttcacttagaaaaactcctcatcttttctcttattcatctcccaagtcattcgttccgctttctgcttgccttgctgttcttctatggtcctctcctgctaatgctggatttctttcgggttatactggtatagaatcagttcctggccctgaattacctaagattgagtttcttaatcgttggaacgataataatcagaaaaagtatgcagaactcgatgaaaaattcaaagagtcgcctttgcttaaacagttactcgaaaaatccaagcaaaataaagagaagaacaaaggtcaattggagacnagtattgtttacgcggagctgaatggggagttggagattgctcaacagcaggaatgacaccagaagacagagatagcttcattgccatgttgaagcagaaggctggtgtagaatgaacgcgcaattatgtactactncttatcgatgatgctggtttcatttccgaatgcagagagtgaagattgaagcgtaatgctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="68665" stop="70592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68965" g_stop="69226" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69227" i_stop="69621" i_length="395">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69622" g_stop="69711" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="352" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69712" i_stop="69790" i_length="79">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69791" g_stop="69887" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="449" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69888" i_stop="70067" i_length="180">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70068" g_stop="70292" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="672" r_length="223" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E314285" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68965" e_stop="69226"/>
          <exon e_start="69622" e_stop="69711"/>
          <exon e_start="69791" e_stop="69887"/>
          <exon e_start="70068" e_stop="70292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCAGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTGGTAATGTTATCTTGATCAATCTTTTTTACTTTGCCCCTTTAGCCTTTTCTTATGTTTGTTTACATAGTCTTGATGTTATATGTATTGAGCTATGACTATAGAAGCGGATCTAGAATTTGAATTTCAGGACGTAACATAAGCATATACATTTTGTCCATTCAAGAGGAGTATTATTCTCTTTGATCCATCGTCGTGTAAGTGAGGAATGTCAGTCATCATAGTCCCAACTTAAAACTATTAGTTTTTTCGTCGAACTTGTGTATTCAAGGGATATAGAGGGTTCATATTCATTAGGAAATGATAAACTGTTTTGTTTATCTAATTTAGTTTCAATACAATTTATTCGTTTTCAATGTTTAGATACTAATAAAGATGTCATTCTGTTCCAATTGCAGCTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACGGTATTATCTCAAACTAACATTGTAAATAAAACTCCGCTAACATTTTGCAGTAAGATCATGATATGCTCTTTTGTTGCAGATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAAGTAAGTTTTCTTTCATCTCGAATGATTAGCTTTTGAATACACACACGAGATATCATTTCTGTAGTATGATTTTTCGACGAAGGAGTGAAAATTGATGATGCACTTTCATATGTTGTCCTTTTAGTGATCACACCGATCAAGTACCAAACAAATGGTAATTTTTCGTGTTTTTTTTGTCAGGAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTTGAAGCAGAAGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTCTTTATCGATGATGCTGGTTTCAATTTCCGAATGCAGAGAGTGAAGATTGAAGCGTAATGCTGAAA</genome_strand>
        <mrna_strand>TGCTTCCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCAGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................CTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACG...............................................................................ATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAA....................................................................................................................................................................................GAAC-AAAGGTCAATTGGAGACNAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTTGAAGCAGAAGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTNCTTATCGATGATGCTGGTTTC-ATTTCCGAATGCAGAGAGTGAAGATTGAAGCGTAATGCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250584" ref_strand="+" ref_description="SGN-E250584 [cLEG-7-E11]">
      <seq>cttgcctatcttcttcttctactactactttttggtctagtggaagcagagcaaaagcggaattatgactatggctactcctatttctccaatgaagcaattcccttcaactgctcttcaaccattcccatcaatctttcaaagaaaaccagtactaatctcttcacttagaaaaactcctcatcttttctcttattcatctcccaagtcattcgttccgctttctgcttgccttgctgttcttctatggtcctctcctgctaatgctggatttctttcgggttatactggtatagaatcagttcctggccctgaattacctaagattgagtttcttaatcgttggaacgataataatcagaaaaagtatgcagaactcgatgaaaaattcaaagagtcgcctttgcttaaacagttactcgaaaaatccaagctaaataaagagaagaacaaaaggtcaattgaagacaagtattgtttacgcggagctgaatggggagttggagattgctcaacagcaggaatgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="68667" stop="70450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68967" g_stop="69226" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69227" i_stop="69621" i_length="395">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69622" g_stop="69711" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="350" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69712" i_stop="69790" i_length="79">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69791" g_stop="69887" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="447" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69888" i_stop="70067" i_length="180">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70068" g_stop="70150" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="530" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E250584" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68967" e_stop="69226"/>
          <exon e_start="69622" e_stop="69711"/>
          <exon e_start="69791" e_stop="69887"/>
          <exon e_start="70068" e_stop="70150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCAGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTGGTAATGTTATCTTGATCAATCTTTTTTACTTTGCCCCTTTAGCCTTTTCTTATGTTTGTTTACATAGTCTTGATGTTATATGTATTGAGCTATGACTATAGAAGCGGATCTAGAATTTGAATTTCAGGACGTAACATAAGCATATACATTTTGTCCATTCAAGAGGAGTATTATTCTCTTTGATCCATCGTCGTGTAAGTGAGGAATGTCAGTCATCATAGTCCCAACTTAAAACTATTAGTTTTTTCGTCGAACTTGTGTATTCAAGGGATATAGAGGGTTCATATTCATTAGGAAATGATAAACTGTTTTGTTTATCTAATTTAGTTTCAATACAATTTATTCGTTTTCAATGTTTAGATACTAATAAAGATGTCATTCTGTTCCAATTGCAGCTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACGGTATTATCTCAAACTAACATTGTAAATAAAACTCCGCTAACATTTTGCAGTAAGATCATGATATGCTCTTTTGTTGCAGATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAAGTAAGTTTTCTTTCATCTCGAATGATTAGCTTTTGAATACACACACGAGATATCATTTCTGTAGTATGATTTTTCGACGAAGGAGTGAAAATTGATGATGCACTTTCATATGTTGTCCTTTTAGTGATCACACCGATCAAGTACCAAACAAATGGTAATTTTTCGTGTTTTTTTTGTCAGGAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACAC</genome_strand>
        <mrna_strand>CTTGCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCGGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................CTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACG...............................................................................ATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCTAAATAAAGAGAA....................................................................................................................................................................................GAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280875" ref_strand="-" ref_description="SGN-E280875 [cLEL-6-A22](-)">
      <seq>gcacgaggaattatgactatggctactcctatttctccaatgaagcaattcccttgagctgctcttcaaccattcccatcaacatttcaaagaaaaccagtactaatctcttcacttagaaaaactcctcatcttttctcttattcatctcccaagtcattcgttccgctttctgcttgccttgctgttcttctatggtcctctcctgctaatgctggatttctttcgggttatactggtatagaatcagttcctggccctgaattacctaagattgagtttcttaatcgttggaacgataataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="68721" stop="70017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69017" g_stop="69226" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69227" i_stop="69621" i_length="395">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69622" g_stop="69711" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="298" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69712" i_stop="69790" i_length="79">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69791" g_stop="69797" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="305" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E280875" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280875" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69017" e_stop="69226"/>
          <exon e_start="69622" e_stop="69711"/>
          <exon e_start="69791" e_stop="69797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAGCAGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTGGTAATGTTATCTTGATCAATCTTTTTTACTTTGCCCCTTTAGCCTTTTCTTATGTTTGTTTACATAGTCTTGATGTTATATGTATTGAGCTATGACTATAGAAGCGGATCTAGAATTTGAATTTCAGGACGTAACATAAGCATATACATTTTGTCCATTCAAGAGGAGTATTATTCTCTTTGATCCATCGTCGTGTAAGTGAGGAATGTCAGTCATCATAGTCCCAACTTAAAACTATTAGTTTTTTCGTCGAACTTGTGTATTCAAGGGATATAGAGGGTTCATATTCATTAGGAAATGATAAACTGTTTTGTTTATCTAATTTAGTTTCAATACAATTTATTCGTTTTCAATGTTTAGATACTAATAAAGATGTCATTCTGTTCCAATTGCAGCTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACGGTATTATCTCAAACTAACATTGTAAATAAAACTCCGCTAACATTTTGCAGTAAGATCATGATATGCTCTTTTGTTGCAGATAATAA</genome_strand>
        <mrna_strand>GCACGAG--GAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTGAGCTGCTCTTCAACCATTCCCATCAACATTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................CTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACG...............................................................................ATAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346922" ref_strand="+" ref_description="SGN-E346922 [cTOF-32-J23]">
      <seq>agaattatgactatggctactcctatttctccaatgaagcaattcccttcaactgctcttcaaccattcccatcaatctttcaaagaaaaccagtactaatctcttcacttagaaaaactcctcatcttttctcttattcatctcccaagtcattcgttccgctttctgcttgccttgctgttcttctatggtcctctcctgctaatgctggatttctttcgggttatactggtatagaatcagttcctggccctgaattacctaagattgagtttcttaatcgttggaacgataataatcagaaaaagtatgcagaactcgatgaaaaattcaaagagtcgcctttgcttaaacagttactcgaaaaatccaagcaaaataaagagaagaacaaaaggtcaattgaagacaagtattgtttacgcggagctgaatggggagttggagattgctcaacagcaggaatgacaccagaagacagagatagcttcattgccatgtngaagcagaaggctggtgtagaatgaacgcgcaattatgtactactctttatcgatgatgctggtttcaatttccgaatgcagagagtgaagattgaagcgtaatgctgaaaattcgcgataggagacggggagtttgattgagccttataacctgttagtattagcataagcacaagaacatgtcaaaagggacatttcttctattgttctatagcttgtaaatacattgcactagtaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="68725" stop="70722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69025" g_stop="69226" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69227" i_stop="69621" i_length="395">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69622" g_stop="69711" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="292" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69712" i_stop="69790" i_length="79">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69791" g_stop="69887" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="389" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69888" i_stop="70067" i_length="180">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70068" g_stop="70422" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="744" r_length="355" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E346922" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69025" e_stop="69226"/>
          <exon e_start="69622" e_stop="69711"/>
          <exon e_start="69791" e_stop="69887"/>
          <exon e_start="70068" e_stop="70422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTGGTAATGTTATCTTGATCAATCTTTTTTACTTTGCCCCTTTAGCCTTTTCTTATGTTTGTTTACATAGTCTTGATGTTATATGTATTGAGCTATGACTATAGAAGCGGATCTAGAATTTGAATTTCAGGACGTAACATAAGCATATACATTTTGTCCATTCAAGAGGAGTATTATTCTCTTTGATCCATCGTCGTGTAAGTGAGGAATGTCAGTCATCATAGTCCCAACTTAAAACTATTAGTTTTTTCGTCGAACTTGTGTATTCAAGGGATATAGAGGGTTCATATTCATTAGGAAATGATAAACTGTTTTGTTTATCTAATTTAGTTTCAATACAATTTATTCGTTTTCAATGTTTAGATACTAATAAAGATGTCATTCTGTTCCAATTGCAGCTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACGGTATTATCTCAAACTAACATTGTAAATAAAACTCCGCTAACATTTTGCAGTAAGATCATGATATGCTCTTTTGTTGCAGATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAAGTAAGTTTTCTTTCATCTCGAATGATTAGCTTTTGAATACACACACGAGATATCATTTCTGTAGTATGATTTTTCGACGAAGGAGTGAAAATTGATGATGCACTTTCATATGTTGTCCTTTTAGTGATCACACCGATCAAGTACCAAACAAATGGTAATTTTTCGTGTTTTTTTTGTCAGGAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTTGAAGCAGAAGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTCTTTATCGATGATGCTGGTTTCAATTTCCGAATGCAGAGAGTGAAGATTGAAGCGTAATGCTGAAAATTCGCGATAGGAGACGGGGAGTTTGATTGAGCCTTATAACCTGTTAGTATTAGCATAAGCACAAGAACATGTCAAAAGGGACATTTCTTCTATTGTTCTATAGCTTGTAAATACATTGCACTAGTAAAT</genome_strand>
        <mrna_strand>AGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................CTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACG...............................................................................ATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAA....................................................................................................................................................................................GAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTNGAAGCAGAAGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTCTTTATCGATGATGCTGGTTTCAATTTCCGAATGCAGAGAGTGAAGATTGAAGCGTAATGCTGAAAATTCGCGATAGGAGACGGGGAGTTTGATTGAGCCTTATAACCTGTTAGTATTAGCATAAGCACAAGAACATGTCAAAAGGGACATTTCTTCTATTGTTCTATAGCTTGTAAATACATTGCACTAGTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260506" ref_strand="+" ref_description="SGN-E260506 [cLEG-54-C6]">
      <seq>ctatttctccaatgaagcaattcccttcaactgctcttcaaccattcccatcaatctttcaaagaaaaccagtactaatctcttcacttagaaaaactcctcatcttttctcttattcatctcccaagtcattcgttccgctttctgcttgccttgctgttcttctatggtcctctcctgctaatgctggatttctttcgggttatactggtatagaatcagttcctggccctgaattacctaagattgagtttcttaatcgttggaacgataataatcagaaaaagtatgcagaactcgatgaaaaattcaaagagtcgcctttgcttaaacagttactcgaaaaatccaagcaaaataaagagaagaacaaaaggtcaattgaagacaagtattgtttacgcggagctgaatggggagttggagattgctcaacagcaggaatgacaccagaagacagagatagcttcattgccatgttgaagcagaaggctggtgtagaatgaacgcgcaattatgtactactctttatcgatgatgctggtttcaatttccgaatgcagagagtgaagattgaagcgtaatgctgaaaattcgcgataggagacggggagtttgattgagccttataacctgttagtattagcataagcacaagaacatgtcaaaagggacatttcttctattgttctatagcttgtaaatacattgcactagtaaattatgagcttgagagtggcatattgatagcgtctgatataccgtcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="68747" stop="70770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69047" g_stop="69226" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69227" i_stop="69621" i_length="395">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69622" g_stop="69711" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="270" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69712" i_stop="69790" i_length="79">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69791" g_stop="69887" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="367" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69888" i_stop="70067" i_length="180">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70068" g_stop="70470" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="770" r_length="403" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E260506" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69047" e_stop="69226"/>
          <exon e_start="69622" e_stop="69711"/>
          <exon e_start="69791" e_stop="69887"/>
          <exon e_start="70068" e_stop="70470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTGGTAATGTTATCTTGATCAATCTTTTTTACTTTGCCCCTTTAGCCTTTTCTTATGTTTGTTTACATAGTCTTGATGTTATATGTATTGAGCTATGACTATAGAAGCGGATCTAGAATTTGAATTTCAGGACGTAACATAAGCATATACATTTTGTCCATTCAAGAGGAGTATTATTCTCTTTGATCCATCGTCGTGTAAGTGAGGAATGTCAGTCATCATAGTCCCAACTTAAAACTATTAGTTTTTTCGTCGAACTTGTGTATTCAAGGGATATAGAGGGTTCATATTCATTAGGAAATGATAAACTGTTTTGTTTATCTAATTTAGTTTCAATACAATTTATTCGTTTTCAATGTTTAGATACTAATAAAGATGTCATTCTGTTCCAATTGCAGCTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACGGTATTATCTCAAACTAACATTGTAAATAAAACTCCGCTAACATTTTGCAGTAAGATCATGATATGCTCTTTTGTTGCAGATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAAGTAAGTTTTCTTTCATCTCGAATGATTAGCTTTTGAATACACACACGAGATATCATTTCTGTAGTATGATTTTTCGACGAAGGAGTGAAAATTGATGATGCACTTTCATATGTTGTCCTTTTAGTGATCACACCGATCAAGTACCAAACAAATGGTAATTTTTCGTGTTTTTTTTGTCAGGAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTTGAAGCAGAAGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTCTTTATCGATGATGCTGGTTTCAATTTCCGAATGCAGAGAGTGAAGATTGAAGCGTAATGCTGAAAATTCGCGATAGGAGACGGGGAGTTTGATTGAGCCTTATAACCTGTTAGTATTAGCATAAGCACAAGAACATGTCAAAAGGGACATTTCTTCTATTGTTCTATAGCTTGTAAATACATTGCACTAGTAAATTATGAGCTTGAGAGTGGCATATTGATAGCGTCTGATATACCGTCAACT</genome_strand>
        <mrna_strand>CTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................CTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACG...............................................................................ATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAA....................................................................................................................................................................................GAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTTGAAGCAGAAGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTCTTTATCGATGATGCTGGTTTCAATTTCCGAATGCAGAGAGTGAAGATTGAAGCGTAATGCTGAAAATTCGCGATAGGAGACGGGGAGTTTGATTGAGCCTTATAACCTGTTAGTATTAGCATAAGCACAAGAACATGTCAAAAGGGACATTTCTTCTATTGTTCTATAGCTTGTAAATACATTGCACTAGTAAATTATGAGCTTGAGAGTGGCATATTGATAGCGTCTGATATACCGTCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252520" ref_strand="+" ref_description="SGN-E252520 [cLEG-20-F17]">
      <seq>ctatttctccaatgaagcaattcccttcaactgctcttcaaccattcccatcaatctttcaaagaaaaccaggactaatctcttcacttagaaaaactcctcatcttttctcttattcatctcccaagtcattcgttccgctttctgcttgccttgctgtgcttctatggtcctctcctgctaatgctggatttctttcgggttatactggtatagaatcagttcctggccctgaattacctaagattgagtttcttaatcgttggaacgataataatcagaaaaagtatgcagaactcgatgaaaaattcaaagagtcgcctttgcttaaacagttactcgaaaaatccaagccaaataaagagaagaacaaaaggtcaattgaagacaagtattgtttacgcggagctgaatggggagttggagattgctcaacagcaggaatgacaccagaagacagagatagcttcattgccatgttgaagcaaaaggctggtgtagaatgaacgcgcaattatgtactactctttatcgatgatgctggtttcaatttccgaatgcagagagtgaagattgaagcgtaatgctgaaaattcgcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="68747" stop="70600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69047" g_stop="69226" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69227" i_stop="69621" i_length="395">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69622" g_stop="69711" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="270" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69712" i_stop="69790" i_length="79">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69791" g_stop="69887" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="367" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69888" i_stop="70067" i_length="180">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70068" g_stop="70300" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="600" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E252520" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69047" e_stop="69226"/>
          <exon e_start="69622" e_stop="69711"/>
          <exon e_start="69791" e_stop="69887"/>
          <exon e_start="70068" e_stop="70300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTGGTAATGTTATCTTGATCAATCTTTTTTACTTTGCCCCTTTAGCCTTTTCTTATGTTTGTTTACATAGTCTTGATGTTATATGTATTGAGCTATGACTATAGAAGCGGATCTAGAATTTGAATTTCAGGACGTAACATAAGCATATACATTTTGTCCATTCAAGAGGAGTATTATTCTCTTTGATCCATCGTCGTGTAAGTGAGGAATGTCAGTCATCATAGTCCCAACTTAAAACTATTAGTTTTTTCGTCGAACTTGTGTATTCAAGGGATATAGAGGGTTCATATTCATTAGGAAATGATAAACTGTTTTGTTTATCTAATTTAGTTTCAATACAATTTATTCGTTTTCAATGTTTAGATACTAATAAAGATGTCATTCTGTTCCAATTGCAGCTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACGGTATTATCTCAAACTAACATTGTAAATAAAACTCCGCTAACATTTTGCAGTAAGATCATGATATGCTCTTTTGTTGCAGATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAAGTAAGTTTTCTTTCATCTCGAATGATTAGCTTTTGAATACACACACGAGATATCATTTCTGTAGTATGATTTTTCGACGAAGGAGTGAAAATTGATGATGCACTTTCATATGTTGTCCTTTTAGTGATCACACCGATCAAGTACCAAACAAATGGTAATTTTTCGTGTTTTTTTTGTCAGGAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTTGAAGCAGAAGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTCTTTATCGATGATGCTGGTTTCAATTTCCGAATGCAGAGAGTGAAGATTGAAGCGTAATGCTGAAAATTCGCGA</genome_strand>
        <mrna_strand>CTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGGACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTGCTTCTATGGTCCTCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................CTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACG...............................................................................ATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCCAAATAAAGAGAA....................................................................................................................................................................................GAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTTGAAGCAAAAGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTCTTTATCGATGATGCTGGTTTCAATTTCCGAATGCAGAGAGTGAAGATTGAAGCGTAATGCTGAAAATTCGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251471" ref_strand="+" ref_description="SGN-E251471 [cLEG-9-N9]">
      <seq>ctatttctccaatgaagcaattcccttcaactgctcttcaaccattcccatcaatctttcaaagaaaaccagtactaatctcttcacttagaaaaactcctcatcttttctcttattcatctcccaagtcattcgttccgctttctgcttgccttgctgttcttctatggtcctctcctgctaatgctggatttctttcgggttatactggtatagaatcagttcctggccctgaattacctaagattgagtttcttaatcgttggaacgataataatcagaaaaagtatgcagaactcgatgaaaaattcaaagagtcgcctttgcttaaacagttactcgaaaaatccaagcaaaataaagagaagaacaaaaggtcaattgaagacaagtattgtttacgcggagctgaatggggagttggagattgctcaacagcaggaatgacaccagaagacagagatagcttcattgccatgttgaagcagaaggctggtgtagaatgaacgcgcaattatgtactactctttatcgatgatgctggtttcaatttcccaatgccgaaaaggaagattgaagcgtaatgctgaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="68747" stop="70595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69047" g_stop="69226" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69227" i_stop="69621" i_length="395">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69622" g_stop="69711" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="270" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69712" i_stop="69790" i_length="79">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69791" g_stop="69887" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="367" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69888" i_stop="70067" i_length="180">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70068" g_stop="70295" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="595" r_length="228" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E251471" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69047" e_stop="69226"/>
          <exon e_start="69622" e_stop="69711"/>
          <exon e_start="69791" e_stop="69887"/>
          <exon e_start="70068" e_stop="70295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTGGTAATGTTATCTTGATCAATCTTTTTTACTTTGCCCCTTTAGCCTTTTCTTATGTTTGTTTACATAGTCTTGATGTTATATGTATTGAGCTATGACTATAGAAGCGGATCTAGAATTTGAATTTCAGGACGTAACATAAGCATATACATTTTGTCCATTCAAGAGGAGTATTATTCTCTTTGATCCATCGTCGTGTAAGTGAGGAATGTCAGTCATCATAGTCCCAACTTAAAACTATTAGTTTTTTCGTCGAACTTGTGTATTCAAGGGATATAGAGGGTTCATATTCATTAGGAAATGATAAACTGTTTTGTTTATCTAATTTAGTTTCAATACAATTTATTCGTTTTCAATGTTTAGATACTAATAAAGATGTCATTCTGTTCCAATTGCAGCTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACGGTATTATCTCAAACTAACATTGTAAATAAAACTCCGCTAACATTTTGCAGTAAGATCATGATATGCTCTTTTGTTGCAGATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAAGTAAGTTTTCTTTCATCTCGAATGATTAGCTTTTGAATACACACACGAGATATCATTTCTGTAGTATGATTTTTCGACGAAGGAGTGAAAATTGATGATGCACTTTCATATGTTGTCCTTTTAGTGATCACACCGATCAAGTACCAAACAAATGGTAATTTTTCGTGTTTTTTTTGTCAGGAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTTGAAGCAGAAGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTCTTTATCGATGATGCTGGTTTCAATTTCCGAATGCAGAGAGTGAAGATTGAAGCGTAATGCTGAAAATT</genome_strand>
        <mrna_strand>CTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................CTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACG...............................................................................ATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAA....................................................................................................................................................................................GAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTTGAAGCAGAAGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTCTTTATCGATGATGCTGGTTTCAATTTCCCAATGCCGAAAAGGAAGATTGAAGCGTAATGCTGAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373108" ref_strand="+" ref_description="SGN-E373108 [TUS-32-M9](-)">
      <seq>aaaactcctcatcttttctcttattcatctcccaagtcattcgttccgctttctgcttgccttgctgttcttctatggtcctctcctgctaatgctggatttctttcgggttatactggtatagaatcagttcctggccctgaattacctaagattgagttttttaatcgttggaacgataataatcagaaaaagtatgcagaactcgatgaaaaattcaaagagtcgcctttgctcaaacagttactcgaaaaatccaagcaaaataaagagaagaacaaaaggtcaattgaagacaagtattgtttacgcggagctgaatggggagttggggattgctcaacagcaggaatgacaccagaagacagagatagcttcattgccatgttgaagcacaaggctggtgtagaatgaacgcgcaattatgtactactctttatcgatgatgctggtttcaatttccgaatgcagagagtgaagattgaagcgtaatgctgaaaattcgcgataggagacggggagtttgattgagccttataacctgttagtattagcataagcacaagaacatgtcaaaagggacattttttttattgttttatagcttgtaaatacattgcactagtaaattatgagcttgagagtggcatattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="68839" stop="70749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69139" g_stop="69226" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69227" i_stop="69621" i_length="395">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69622" g_stop="69711" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="178" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69712" i_stop="69790" i_length="79">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69791" g_stop="69887" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="275" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69888" i_stop="70067" i_length="180">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70068" g_stop="70442" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="650" r_length="375" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70443" i_stop="70662" i_length="220">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70663" g_stop="70678" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="666" r_length="16" r_score="0.688"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E373108" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69139" e_stop="69226"/>
          <exon e_start="69622" e_stop="69711"/>
          <exon e_start="69791" e_stop="69887"/>
          <exon e_start="70068" e_stop="70442"/>
          <exon e_start="70663" e_stop="70678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTGGTAATGTTATCTTGATCAATCTTTTTTACTTTGCCCCTTTAGCCTTTTCTTATGTTTGTTTACATAGTCTTGATGTTATATGTATTGAGCTATGACTATAGAAGCGGATCTAGAATTTGAATTTCAGGACGTAACATAAGCATATACATTTTGTCCATTCAAGAGGAGTATTATTCTCTTTGATCCATCGTCGTGTAAGTGAGGAATGTCAGTCATCATAGTCCCAACTTAAAACTATTAGTTTTTTCGTCGAACTTGTGTATTCAAGGGATATAGAGGGTTCATATTCATTAGGAAATGATAAACTGTTTTGTTTATCTAATTTAGTTTCAATACAATTTATTCGTTTTCAATGTTTAGATACTAATAAAGATGTCATTCTGTTCCAATTGCAGCTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACGGTATTATCTCAAACTAACATTGTAAATAAAACTCCGCTAACATTTTGCAGTAAGATCATGATATGCTCTTTTGTTGCAGATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAAGTAAGTTTTCTTTCATCTCGAATGATTAGCTTTTGAATACACACACGAGATATCATTTCTGTAGTATGATTTTTCGACGAAGGAGTGAAAATTGATGATGCACTTTCATATGTTGTCCTTTTAGTGATCACACCGATCAAGTACCAAACAAATGGTAATTTTTCGTGTTTTTTTTGTCAGGAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTTGAAGCAGAAGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTCTTTATCGATGATGCTGGTTTCAATTTCCGAATGCAGAGAGTGAAGATTGAAGCGTAATGCTGAAAATTCGCGATAGGAGACGGGGAGTTTGATTGAGCCTTATAACCTGTTAGTATTAGCATAAGCACAAGAACATGTCAAAAGGGACATTTCTTCTATTGTTCTATAGCTTGTAAATACATTGCACTAGTAAATTATGAGCTTGAGAGTGGCATATTGATAGCGTCTGATATACCGTCAACTTTTTCATTTAGAGGTGATATACTCTTGTAATAAAAAGTGGCTCATATACTCATACTCCTACCATTACAAAAAAAATAGCTCGTATATACCCAATCGTTATAGAAGTGGCTAGCATATACATGTACAGTAAAAAAAGTAAAAAAAAATCATTTTGAATTTAGTAAACAAAATATTTTTACTTTCATTCTTTAGTGTAAAAATAAGAGAA</genome_strand>
        <mrna_strand>AAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................CTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTTTTAATCGTTGGAACG...............................................................................ATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTCAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAA....................................................................................................................................................................................GAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGGGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTTGAAGCACAAGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTCTTTATCGATGATGCTGGTTTCAATTTCCGAATGCAGAGAGTGAAGATTGAAGCGTAATGCTGAAAATTCGCGATAGGAGACGGGGAGTTTGATTGAGCCTTATAACCTGTTAGTATTAGCATAAGCACAAGAACATGTCAAAAGGGACATTTTTTTTATTGTTTTATAGCTTGTAAATACATTGCACTAGTAAATTATGAGCTTGAGAGTGGCAT............................................................................................................................................................................................................................ATTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329311" ref_strand="+" ref_description="SGN-E329311 [cTOD-2-K22]">
      <seq>caaagggagtcccgattttggctatagctcattttttggaccccacccctccagcacaattccctcctattgccaacctagcttgttgtcttgttgaaatttcacatccattcacaggtgattttcttgaagaattctcaaagggggatttgattcttttggtggaaacgtggggttactgaattttttcagtatgtgtttgactttagctgttatcgaacaaaggagaatattctgttctttatgaaggaataggagtgagattcgagttaagagaaggaaattatgtatcggcctgtagcaactactacccgaggaggggtaccaactgatagtggagattctgtggtgacactggatcaagttccacgttggattgattctgacattaggtacttgtatgagaatgaagaccctaattccgactatgcagatcctttgtcatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="75006" stop="76450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75306" g_stop="75449" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75450" i_stop="75845" i_length="396">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75846" g_stop="76150" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="449" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E329311" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75306" e_stop="75449"/>
          <exon e_start="75846" e_stop="76150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGGAGTCCCGATTTTGGCTATAGCTCATTTTTTGGACCCCACCCCTCCAGCACAATTCCCTCCTATTGCCAACCTAGCTTGTTGTCTTGTTGAAATTTCACATCCATTCACAGGTGATTTTCTTGAAGAATTCTCAAAGGGTATGTGTTTTGTTGATGATTTTGTTGATATGTTAGTTTTTTTTCTTTGTGGGGTAATGTATATGTGATTCTTGAATCTGGTTGAAGAACCTTTAAATTGTGTTTTGTTGGTATAGGTTCTGTTGAGGTTGTAATTTTGTTAAGTTTGATCAATTGGATGGTTTCTTGGTTTAATTTTTAAAAATGGGGTTGTTTTTGTTGATTTTGATGTAGTGATAATGAATTAATGATGTTTTGCTCAATTGAATTTGTGGGGGTTGAGGTTTAGTTTAGTATGATGAGCAATTTTAGATGTAAAGATTGGATTTTTATTGGGAATTATACCTATTTCCAGCTTAAGTTTTGTGGTGTTTTGTCCTGTGTATGGAGTTGGATAATACTTTGTGTTCTTTTCAGGGGATTTGATTCTTTTGGTGGAAACGTGGGGTTACTGAATTTTTTCAGTATGTGTTTGACTTTAGCTGTTATCGAACAAAGGAGAATATTCTGTTCTTTATGAAGGAATAGGAGTGAGATTCGAGTTAAGAGAAGGAAATTATGTATCGGCCTGTAGCAACTACTACCCGAGGAGGGGTACCAACTGATAGTGGAGATTCTGTGGTGACACTGGATCAAGTTCCACGTTGGATTGATTCTGACATTAGGTACTTGTATGAGAATGAAGACCCTAATTCCGACTATGCAGATCCTTTGTCATCTGC</genome_strand>
        <mrna_strand>CAAAGGGAGTCCCGATTTTGGCTATAGCTCATTTTTTGGACCCCACCCCTCCAGCACAATTCCCTCCTATTGCCAACCTAGCTTGTTGTCTTGTTGAAATTTCACATCCATTCACAGGTGATTTTCTTGAAGAATTCTCAAAGG............................................................................................................................................................................................................................................................................................................................................................................................................GGGATTTGATTCTTTTGGTGGAAACGTGGGGTTACTGAATTTTTTCAGTATGTGTTTGACTTTAGCTGTTATCGAACAAAGGAGAATATTCTGTTCTTTATGAAGGAATAGGAGTGAGATTCGAGTTAAGAGAAGGAAATTATGTATCGGCCTGTAGCAACTACTACCCGAGGAGGGGTACCAACTGATAGTGGAGATTCTGTGGTGACACTGGATCAAGTTCCACGTTGGATTGATTCTGACATTAGGTACTTGTATGAGAATGAAGACCCTAATTCCGACTATGCAGATCCTTTGTCATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331487" ref_strand="+" ref_description="SGN-E331487 [cTOD-9-M17]">
      <seq>caaagggagtcccgattttggctatagctcattttttggaccccacccctccagcacaattccctcctattgccaacctagcttgttgtcttgttgaaatttcacatccattcacaggtgattttcttgaagaattctcaaagggggatttgattcttttggtggaaacgtggggttactgaattttttcagtatgtgtttgactttagctgttatcgaacaaaggagaatattctgttctttatgaaggaataggagtgagattcgagttaagagaaggaaattatgtatcggcctgtagcaactactacccgaggaggggtaccaactgatagtggagattctgtggtgacactggatcaagttccacgttggattgattctgacattaggtacttgtatgagaatgaagaccctaattccgactatgcagatcctttgtcatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="75006" stop="76450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75306" g_stop="75449" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75450" i_stop="75845" i_length="396">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75846" g_stop="76150" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="449" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E331487" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75306" e_stop="75449"/>
          <exon e_start="75846" e_stop="76150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGGAGTCCCGATTTTGGCTATAGCTCATTTTTTGGACCCCACCCCTCCAGCACAATTCCCTCCTATTGCCAACCTAGCTTGTTGTCTTGTTGAAATTTCACATCCATTCACAGGTGATTTTCTTGAAGAATTCTCAAAGGGTATGTGTTTTGTTGATGATTTTGTTGATATGTTAGTTTTTTTTCTTTGTGGGGTAATGTATATGTGATTCTTGAATCTGGTTGAAGAACCTTTAAATTGTGTTTTGTTGGTATAGGTTCTGTTGAGGTTGTAATTTTGTTAAGTTTGATCAATTGGATGGTTTCTTGGTTTAATTTTTAAAAATGGGGTTGTTTTTGTTGATTTTGATGTAGTGATAATGAATTAATGATGTTTTGCTCAATTGAATTTGTGGGGGTTGAGGTTTAGTTTAGTATGATGAGCAATTTTAGATGTAAAGATTGGATTTTTATTGGGAATTATACCTATTTCCAGCTTAAGTTTTGTGGTGTTTTGTCCTGTGTATGGAGTTGGATAATACTTTGTGTTCTTTTCAGGGGATTTGATTCTTTTGGTGGAAACGTGGGGTTACTGAATTTTTTCAGTATGTGTTTGACTTTAGCTGTTATCGAACAAAGGAGAATATTCTGTTCTTTATGAAGGAATAGGAGTGAGATTCGAGTTAAGAGAAGGAAATTATGTATCGGCCTGTAGCAACTACTACCCGAGGAGGGGTACCAACTGATAGTGGAGATTCTGTGGTGACACTGGATCAAGTTCCACGTTGGATTGATTCTGACATTAGGTACTTGTATGAGAATGAAGACCCTAATTCCGACTATGCAGATCCTTTGTCATCTGC</genome_strand>
        <mrna_strand>CAAAGGGAGTCCCGATTTTGGCTATAGCTCATTTTTTGGACCCCACCCCTCCAGCACAATTCCCTCCTATTGCCAACCTAGCTTGTTGTCTTGTTGAAATTTCACATCCATTCACAGGTGATTTTCTTGAAGAATTCTCAAAGG............................................................................................................................................................................................................................................................................................................................................................................................................GGGATTTGATTCTTTTGGTGGAAACGTGGGGTTACTGAATTTTTTCAGTATGTGTTTGACTTTAGCTGTTATCGAACAAAGGAGAATATTCTGTTCTTTATGAAGGAATAGGAGTGAGATTCGAGTTAAGAGAAGGAAATTATGTATCGGCCTGTAGCAACTACTACCCGAGGAGGGGTACCAACTGATAGTGGAGATTCTGTGGTGACACTGGATCAAGTTCCACGTTGGATTGATTCTGACATTAGGTACTTGTATGAGAATGAAGACCCTAATTCCGACTATGCAGATCCTTTGTCATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329409" ref_strand="+" ref_description="SGN-E329409 [cTOD-2-J20]">
      <seq>agtcccgattttggctatagctcattttttggaccccacccctccagcacaattccctcctattgccaacctagcttgttgtcttgttgaaatttcacatccattcacaggtgattttcttgaagaattctcaaagggggatttgattcttttggtggaaacgtggggttactgaattttttcagtatgtgtttgactttagctgttatcgaacaaaggagaatattctgttctttatgaaggaataggagtgagattcgagttaagagaaggaaattatgtatcggcctgtagcaactactacccgaggaggggtaccaactgatagtggagattctgtggtgacactggatcaagttccacgttggattgattctgacattaagtacttgtatgagaatgaagaccctaattccgactatgcagatcctttgtcatctgcttcaaggtctgagggcaatgcgaatggtattgtttccaagtttcctgtggatcatgagattaactccaagatatacctgtggagaggagacccctggaatctcgaagtagatgctgttgttaactctacaaatgagaatttagatgaagcacacagcacccctggattgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="75013" stop="77682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75313" g_stop="75449" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75450" i_stop="75845" i_length="396">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75846" g_stop="76286" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="578" r_length="441" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76287" i_stop="77346" i_length="1060">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77347" g_stop="77382" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="614" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E329409" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75313" e_stop="75449"/>
          <exon e_start="75846" e_stop="76286"/>
          <exon e_start="77347" e_stop="77382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCCGATTTTGGCTATAGCTCATTTTTTGGACCCCACCCCTCCAGCACAATTCCCTCCTATTGCCAACCTAGCTTGTTGTCTTGTTGAAATTTCACATCCATTCACAGGTGATTTTCTTGAAGAATTCTCAAAGGGTATGTGTTTTGTTGATGATTTTGTTGATATGTTAGTTTTTTTTCTTTGTGGGGTAATGTATATGTGATTCTTGAATCTGGTTGAAGAACCTTTAAATTGTGTTTTGTTGGTATAGGTTCTGTTGAGGTTGTAATTTTGTTAAGTTTGATCAATTGGATGGTTTCTTGGTTTAATTTTTAAAAATGGGGTTGTTTTTGTTGATTTTGATGTAGTGATAATGAATTAATGATGTTTTGCTCAATTGAATTTGTGGGGGTTGAGGTTTAGTTTAGTATGATGAGCAATTTTAGATGTAAAGATTGGATTTTTATTGGGAATTATACCTATTTCCAGCTTAAGTTTTGTGGTGTTTTGTCCTGTGTATGGAGTTGGATAATACTTTGTGTTCTTTTCAGGGGATTTGATTCTTTTGGTGGAAACGTGGGGTTACTGAATTTTTTCAGTATGTGTTTGACTTTAGCTGTTATCGAACAAAGGAGAATATTCTGTTCTTTATGAAGGAATAGGAGTGAGATTCGAGTTAAGAGAAGGAAATTATGTATCGGCCTGTAGCAACTACTACCCGAGGAGGGGTACCAACTGATAGTGGAGATTCTGTGGTGACACTGGATCAAGTTCCACGTTGGATTGATTCTGACATTAGGTACTTGTATGAGAATGAAGACCCTAATTCCGACTATGCAGATCCTTTGTCATCTGCTTCAGGGTCTGAGGGCAATGCGAATGGTATTGTTTCCAAGTTTCCTGTGGATCATGAGATTAACTCCAAGATATACCTGTGGAGAGGAGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACAAATGAGGTGAGAAGTAACTTCTAGATAATTGTATGTTGTGATCTTTGTATTTATTTTGATTAGGTTTCTTGACATACGTAGTATTTGCTTCTTCTGTGGATTAACATTGCATTGTTTGTTTTTAAATTTGGAGAGTAAGGGATCAAATAGTATGTGTGTTTTTAAATTTGGAGAGTAAGGGATTAAATAGTATGTGTGCTTGCATCCGTTCTCTGAGGTTGTGACAGAAACATGAACTTGCACCAACAGACTAGCTAAAGAATTTGGGTTTTCATTGAAATATTGAGTTCCAAGTAGGGTACTTTTGTGTCTGATTTGAGTAAATACAGTAGGGAGTAGGGGATACTTAGAGTTATATGCTTTTTCATGAGCTAGTTATCATGGTCAATAAGTGGGTTCAGTACTCAAATACAAAAAACCCTGGATGATCTCCTACTCATCTACCTAACCTTGGTGGCAGAGTTACCCTATATGTAGATATACTGGTGGGAGGTAGTAGGTACACAGTGGAATAGTTGAGGTGCATGTAGTTATCCCCGACATCACTGTTATAAATAAGAAGAAGACTTTAAAGAGCCAAAAAGGTAGAATATATTTCAATCCTGTTCCTATTTCTTTAAGGGACGGGGTAAGTATGTTTGGGGTACTTTATCCATAAAAAGTGGTACAAGTGGATGTATTTTGATTCTACCAACAATGGGAGGAGTAATATCTATTCAAATTTGCATTCTATTTCTACTTTGCAAGTTTATCATAACCTAGAAGTACCTAGAAACTGACACACGTATATGTAGGCTTTGGATGAGTCTTCTGTTTTTTCCTGGAAATATGTGTCTTACTTGACATCTTCCCAAAAGATCATAAGGTCGACCAGTGTGATGATTAAATTCATTTCCATACATACCATCTATTTAAGATATGTCTGCACTTGTTCTAATTTGTGCAATTTCAGTAAGAAATTTGTAGAAATGTAGAGACCAGTAATTATTGCAATTAACTACATCAAGAAAACACTTTTCTGTCAGTGGAATCGTTGACAATTATACTTCAATTTTGTGCTCAACAGAATTTAGATGAAGCACACAGCAGCCCTGGATTGCAT</genome_strand>
        <mrna_strand>AGTCCCGATTTTGGCTATAGCTCATTTTTTGGACCCCACCCCTCCAGCACAATTCCCTCCTATTGCCAACCTAGCTTGTTGTCTTGTTGAAATTTCACATCCATTCACAGGTGATTTTCTTGAAGAATTCTCAAAGG............................................................................................................................................................................................................................................................................................................................................................................................................GGGATTTGATTCTTTTGGTGGAAACGTGGGGTTACTGAATTTTTTCAGTATGTGTTTGACTTTAGCTGTTATCGAACAAAGGAGAATATTCTGTTCTTTATGAAGGAATAGGAGTGAGATTCGAGTTAAGAGAAGGAAATTATGTATCGGCCTGTAGCAACTACTACCCGAGGAGGGGTACCAACTGATAGTGGAGATTCTGTGGTGACACTGGATCAAGTTCCACGTTGGATTGATTCTGACATTAAGTACTTGTATGAGAATGAAGACCCTAATTCCGACTATGCAGATCCTTTGTCATCTGCTTCAAGGTCTGAGGGCAATGCGAATGGTATTGTTTCCAAGTTTCCTGTGGATCATGAGATTAACTCCAAGATATACCTGTGGAGAGGAGACCCCTGGAATCTCGAAGTAGATGCTGTTGTTAACTCTACAAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAGATGAAGCACACAGCACCCCTGGATTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544331" ref_strand="+" ref_description="SGN-E544331 [TUS-66-J18]">
      <seq>cccgattttggctatagctcattttttggaccccacccctccagcacaattccctcctattgccaacctagcttgttgtcttgttgaaatttcacatccattcacaggtgattttcttgaagaattctcaaagggggatttgattcttttggtggaaacgtggggttactgaattttttcagtatgtgtttgactttagctgttatcgaacaaaggagaatattctgttctttatgaaggaataggagtgagattcgagttaagagaaggaaattatgtatcggcctgtagcaactactacccgaggaggggtaccaactgatagtggagattctgtggtgacactggatcaagttccacgttggattgattctgacattaggtacttgtatgagaatgaagaccctaattccgactatgcagatcctttgtcatctgcttcagggtctgagggcaatgcgaatggtattgtttccaagtttcctgtggatcatgagattaactccaagatatacctgtggagaggagacccctggaatctcgaggtagatgctgttgttaactctacaaatgagaatttagatgaagcacacagcagccctggattgcatgctgcagctggacctggacttgcagaggaatgtgctacactcggaggatgccggacaggaatggcaaaagttaccaatgcttatgatctccctgctaggagggtcattcacactgttggtccgaagtatgcggtaaaatacacactgctgccgagacgctctaagtcattgctatcgctcttgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="75016" stop="79522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75316" g_stop="75449" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75450" i_stop="75845" i_length="396">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75846" g_stop="76286" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="575" r_length="441" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76287" i_stop="77346" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77347" g_stop="77424" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="653" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77425" i_stop="77704" i_length="280">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77705" g_stop="77760" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="709" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77761" i_stop="79132" i_length="1372">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79133" g_stop="79222" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="797" r_length="88" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E544331" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75316" e_stop="75449"/>
          <exon e_start="75846" e_stop="76286"/>
          <exon e_start="77347" e_stop="77424"/>
          <exon e_start="77705" e_stop="77760"/>
          <exon e_start="79133" e_stop="79222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGATTTTGGCTATAGCTCATTTTTTGGACCCCACCCCTCCAGCACAATTCCCTCCTATTGCCAACCTAGCTTGTTGTCTTGTTGAAATTTCACATCCATTCACAGGTGATTTTCTTGAAGAATTCTCAAAGGGTATGTGTTTTGTTGATGATTTTGTTGATATGTTAGTTTTTTTTCTTTGTGGGGTAATGTATATGTGATTCTTGAATCTGGTTGAAGAACCTTTAAATTGTGTTTTGTTGGTATAGGTTCTGTTGAGGTTGTAATTTTGTTAAGTTTGATCAATTGGATGGTTTCTTGGTTTAATTTTTAAAAATGGGGTTGTTTTTGTTGATTTTGATGTAGTGATAATGAATTAATGATGTTTTGCTCAATTGAATTTGTGGGGGTTGAGGTTTAGTTTAGTATGATGAGCAATTTTAGATGTAAAGATTGGATTTTTATTGGGAATTATACCTATTTCCAGCTTAAGTTTTGTGGTGTTTTGTCCTGTGTATGGAGTTGGATAATACTTTGTGTTCTTTTCAGGGGATTTGATTCTTTTGGTGGAAACGTGGGGTTACTGAATTTTTTCAGTATGTGTTTGACTTTAGCTGTTATCGAACAAAGGAGAATATTCTGTTCTTTATGAAGGAATAGGAGTGAGATTCGAGTTAAGAGAAGGAAATTATGTATCGGCCTGTAGCAACTACTACCCGAGGAGGGGTACCAACTGATAGTGGAGATTCTGTGGTGACACTGGATCAAGTTCCACGTTGGATTGATTCTGACATTAGGTACTTGTATGAGAATGAAGACCCTAATTCCGACTATGCAGATCCTTTGTCATCTGCTTCAGGGTCTGAGGGCAATGCGAATGGTATTGTTTCCAAGTTTCCTGTGGATCATGAGATTAACTCCAAGATATACCTGTGGAGAGGAGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACAAATGAGGTGAGAAGTAACTTCTAGATAATTGTATGTTGTGATCTTTGTATTTATTTTGATTAGGTTTCTTGACATACGTAGTATTTGCTTCTTCTGTGGATTAACATTGCATTGTTTGTTTTTAAATTTGGAGAGTAAGGGATCAAATAGTATGTGTGTTTTTAAATTTGGAGAGTAAGGGATTAAATAGTATGTGTGCTTGCATCCGTTCTCTGAGGTTGTGACAGAAACATGAACTTGCACCAACAGACTAGCTAAAGAATTTGGGTTTTCATTGAAATATTGAGTTCCAAGTAGGGTACTTTTGTGTCTGATTTGAGTAAATACAGTAGGGAGTAGGGGATACTTAGAGTTATATGCTTTTTCATGAGCTAGTTATCATGGTCAATAAGTGGGTTCAGTACTCAAATACAAAAAACCCTGGATGATCTCCTACTCATCTACCTAACCTTGGTGGCAGAGTTACCCTATATGTAGATATACTGGTGGGAGGTAGTAGGTACACAGTGGAATAGTTGAGGTGCATGTAGTTATCCCCGACATCACTGTTATAAATAAGAAGAAGACTTTAAAGAGCCAAAAAGGTAGAATATATTTCAATCCTGTTCCTATTTCTTTAAGGGACGGGGTAAGTATGTTTGGGGTACTTTATCCATAAAAAGTGGTACAAGTGGATGTATTTTGATTCTACCAACAATGGGAGGAGTAATATCTATTCAAATTTGCATTCTATTTCTACTTTGCAAGTTTATCATAACCTAGAAGTACCTAGAAACTGACACACGTATATGTAGGCTTTGGATGAGTCTTCTGTTTTTTCCTGGAAATATGTGTCTTACTTGACATCTTCCCAAAAGATCATAAGGTCGACCAGTGTGATGATTAAATTCATTTCCATACATACCATCTATTTAAGATATGTCTGCACTTGTTCTAATTTGTGCAATTTCAGTAAGAAATTTGTAGAAATGTAGAGACCAGTAATTATTGCAATTAACTACATCAAGAAAACACTTTTCTGTCAGTGGAATCGTTGACAATTATACTTCAATTTTGTGCTCAACAGAATTTAGATGAAGCACACAGCAGCCCTGGATTGCATGCTGCAGCTGGACCTGGACTTGCAGAGGAATGTGCTACACTCGTAGGTTCCTCAATGTTTCATATGTTTTCCAGATTTTTCAAAACTTAATTCCTGAATGGATTCACAAATAGGGTCAGAAGCATAATTTGTGGCAACCAATCAACCTCAAACAGTTCCCTTACATTTTTATGGGAGCAGTTTCTTTAGATTTATTTCTTGCACTTTCTGTTTGTTCCAGCTTAAAAATGCTATTTAACTTCTTTTTCAACTGTTGGCCCTTGTATTCAACTTATGATGGTTACACTAGAAAGATTTATGTACAATTTACATTGTTTCATAGGGAGGATGCCGGACAGGAATGGCAAAAGTTACCAATGCTTATGATCTCCCTGCTAGGTGGGTGATTTTTATAAACTTTGTGCATTATTGTTGAGTATGTTAGTAACTGACTTCTTTTTAAGTTGATCTGCAATACCTTATCTTTACATATGCAATAATGATCACTAGTAAATCTTTAACTAGTCGAAGTCAGCTATGTGAACACCCTACATCTATTCTACTCCATCAAGGCATAGTTCATTCAGTACTCAATTATTTGTACTATAGGACAAATCATGGATTCTTAAAAATTAGGGATTTTCTCAATCTCACATCTGTCCATGCATCGTCATACGATCGGAACCAAACTCAAACGATTTCTGCAAAAAATCGGGCTCAGTGTAAAAGCACCACCAACAACTAACTTTAACTGCAACTGGTTGGTGGTGCCTATATGGATGCTTTGCTTTCATTGTGTGTTCTATTATTCGCTAAATCTGCAAGAATTCAAAGAAATTCTATTTCTTTTGAGACAACTTCCCTTCATGTGATTTTTTGGTCCCTCTTGGTACCTTCTGTGATCATGGTAACGTCCTTATACAAAAGAAGAACTCACCTATGAACCGGCGTATTTGGAGCTCTCCTTAAAAAATTTAGCTGTTTCCATCAATGCCCACTTTTCGAGTATGTTCACATAGTGAAGGAAATAGGGGTGGAATCTGTGAACAGCTAAGCTGGTCTTCAATGGGAAAAAAAGAGCATATGTATATTGAAGTATCAGCTGCAAACCACTCAGGGATATCCATGACCTGTCTACTTCACCAAAACCTCACAATACATGGTGTTTGAGTTGGTTATGAAATTGCTATATGAAAGCCAGGCTGCAATTGTATCTGGCAAAAAAGATAAGTTGTTTCATGATCATGAACAATGTGATTGTACTTGTGTTGGATTATCTAAATAATGATCCGATAATGTGAGAGTCTAAAGAAAATATTCGATCTTATTCTTTGACATCATGGTTGGGAGGAAGTACGGCATATCTCAATTCATGCCACTAACCTAACTATATTGTTTTCTCCAGAGCTACTGATGAAAACTGAAGTCATCAAGCTCCTATATCTTACTTTTTACACTCTAATAAGAAAATCGTCATGCCGCTTAACATTTTTTTATTTGAATGGTGATGGCTGGGTGTTGACTGTTGAACAGTAGTAGTAGTATAAATGCATTCCTGTATCACCCTATTTTTTTCATAGTAAAGTAAAATTAATTAAAATAAAAAAATAAGTAAATTACCGTTGATCAAGGTATGAAAAAAGAAAAAGAAATATTCAATGTTCTCTTGCCGTTTGAACTTAGTTCATGATTTTCATCACAATTTTTGCATGGAACAAATGCAGCATAATCATAAGCCTTTGACGTACTGCTGATTGAGTTTCGTGTGCAGGAGGGTCATTCACACTGTTGGTCCGAAGTATGCGGTAAAATACCACACTGCTGCCGAGAACGCTCTAAGTCATTGCTATCGCTCTTGCCT</genome_strand>
        <mrna_strand>CCCGATTTTGGCTATAGCTCATTTTTTGGACCCCACCCCTCCAGCACAATTCCCTCCTATTGCCAACCTAGCTTGTTGTCTTGTTGAAATTTCACATCCATTCACAGGTGATTTTCTTGAAGAATTCTCAAAGG............................................................................................................................................................................................................................................................................................................................................................................................................GGGATTTGATTCTTTTGGTGGAAACGTGGGGTTACTGAATTTTTTCAGTATGTGTTTGACTTTAGCTGTTATCGAACAAAGGAGAATATTCTGTTCTTTATGAAGGAATAGGAGTGAGATTCGAGTTAAGAGAAGGAAATTATGTATCGGCCTGTAGCAACTACTACCCGAGGAGGGGTACCAACTGATAGTGGAGATTCTGTGGTGACACTGGATCAAGTTCCACGTTGGATTGATTCTGACATTAGGTACTTGTATGAGAATGAAGACCCTAATTCCGACTATGCAGATCCTTTGTCATCTGCTTCAGGGTCTGAGGGCAATGCGAATGGTATTGTTTCCAAGTTTCCTGTGGATCATGAGATTAACTCCAAGATATACCTGTGGAGAGGAGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACAAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAGATGAAGCACACAGCAGCCCTGGATTGCATGCTGCAGCTGGACCTGGACTTGCAGAGGAATGTGCTACACTC........................................................................................................................................................................................................................................................................................GGAGGATGCCGGACAGGAATGGCAAAAGTTACCAATGCTTATGATCTCCCTGCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTCATTCACACTGTTGGTCCGAAGTATGCGGTAAAATA-CACACTGCTGCCGAG-ACGCTCTAAGTCATTGCTATCGCTCTTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359454" ref_strand="+" ref_description="SGN-E359454 [cLHT-31-O8]">
      <seq>ccgattttggctatagctcattttttggaccccacccctccagcgcaattccctcctattgccaacctagcttgttgtcttattgaaatttcacatccatttacaggggatttgattcttttggtggaaacgtggggttactgaattttttcagtatgtgtttgactttagctgttatcgaacaaaggagaatattctgttctttatgaaggaataggagtgagattggagttaagagaaggaaattatgtatcggcctgtagaaactactacccgaggaggggtaccaactgatagtggagattctgtggtgacactggatcaagttccacgttggattgattctgacattaggtacttgtatgagaatgaagaccctaattccgactatgcagatcctttgtcatctgcttcagggtctgagggcaatgcgaatggtatcgtttccaagtttcctgtggatcatgagattaactccaagatatacctgtggagaggagacccctggaatctcgaggtagatgctgttgttaactctacaaatgagaatttagatgaagcacacagcagccctggattgcatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="75017" stop="77687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75317" g_stop="75422" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75423" i_stop="75845" i_length="423">
            <donor d_prob="0.948" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75846" g_stop="76286" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="547" r_length="441" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76287" i_stop="77346" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77347" g_stop="77387" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="588" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E359454" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75317" e_stop="75422"/>
          <exon e_start="75846" e_stop="76286"/>
          <exon e_start="77347" e_stop="77387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATTTTGGCTATAGCTCATTTTTTGGACCCCACCCCTCCAGCACAATTCCCTCCTATTGCCAACCTAGCTTGTTGTCTTGTTGAAATTTCACATCCATTCACAGGTGATTTTCTTGAAGAATTCTCAAAGGGTATGTGTTTTGTTGATGATTTTGTTGATATGTTAGTTTTTTTTCTTTGTGGGGTAATGTATATGTGATTCTTGAATCTGGTTGAAGAACCTTTAAATTGTGTTTTGTTGGTATAGGTTCTGTTGAGGTTGTAATTTTGTTAAGTTTGATCAATTGGATGGTTTCTTGGTTTAATTTTTAAAAATGGGGTTGTTTTTGTTGATTTTGATGTAGTGATAATGAATTAATGATGTTTTGCTCAATTGAATTTGTGGGGGTTGAGGTTTAGTTTAGTATGATGAGCAATTTTAGATGTAAAGATTGGATTTTTATTGGGAATTATACCTATTTCCAGCTTAAGTTTTGTGGTGTTTTGTCCTGTGTATGGAGTTGGATAATACTTTGTGTTCTTTTCAGGGGATTTGATTCTTTTGGTGGAAACGTGGGGTTACTGAATTTTTTCAGTATGTGTTTGACTTTAGCTGTTATCGAACAAAGGAGAATATTCTGTTCTTTATGAAGGAATAGGAGTGAGATTCGAGTTAAGAGAAGGAAATTATGTATCGGCCTGTAGCAACTACTACCCGAGGAGGGGTACCAACTGATAGTGGAGATTCTGTGGTGACACTGGATCAAGTTCCACGTTGGATTGATTCTGACATTAGGTACTTGTATGAGAATGAAGACCCTAATTCCGACTATGCAGATCCTTTGTCATCTGCTTCAGGGTCTGAGGGCAATGCGAATGGTATTGTTTCCAAGTTTCCTGTGGATCATGAGATTAACTCCAAGATATACCTGTGGAGAGGAGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACAAATGAGGTGAGAAGTAACTTCTAGATAATTGTATGTTGTGATCTTTGTATTTATTTTGATTAGGTTTCTTGACATACGTAGTATTTGCTTCTTCTGTGGATTAACATTGCATTGTTTGTTTTTAAATTTGGAGAGTAAGGGATCAAATAGTATGTGTGTTTTTAAATTTGGAGAGTAAGGGATTAAATAGTATGTGTGCTTGCATCCGTTCTCTGAGGTTGTGACAGAAACATGAACTTGCACCAACAGACTAGCTAAAGAATTTGGGTTTTCATTGAAATATTGAGTTCCAAGTAGGGTACTTTTGTGTCTGATTTGAGTAAATACAGTAGGGAGTAGGGGATACTTAGAGTTATATGCTTTTTCATGAGCTAGTTATCATGGTCAATAAGTGGGTTCAGTACTCAAATACAAAAAACCCTGGATGATCTCCTACTCATCTACCTAACCTTGGTGGCAGAGTTACCCTATATGTAGATATACTGGTGGGAGGTAGTAGGTACACAGTGGAATAGTTGAGGTGCATGTAGTTATCCCCGACATCACTGTTATAAATAAGAAGAAGACTTTAAAGAGCCAAAAAGGTAGAATATATTTCAATCCTGTTCCTATTTCTTTAAGGGACGGGGTAAGTATGTTTGGGGTACTTTATCCATAAAAAGTGGTACAAGTGGATGTATTTTGATTCTACCAACAATGGGAGGAGTAATATCTATTCAAATTTGCATTCTATTTCTACTTTGCAAGTTTATCATAACCTAGAAGTACCTAGAAACTGACACACGTATATGTAGGCTTTGGATGAGTCTTCTGTTTTTTCCTGGAAATATGTGTCTTACTTGACATCTTCCCAAAAGATCATAAGGTCGACCAGTGTGATGATTAAATTCATTTCCATACATACCATCTATTTAAGATATGTCTGCACTTGTTCTAATTTGTGCAATTTCAGTAAGAAATTTGTAGAAATGTAGAGACCAGTAATTATTGCAATTAACTACATCAAGAAAACACTTTTCTGTCAGTGGAATCGTTGACAATTATACTTCAATTTTGTGCTCAACAGAATTTAGATGAAGCACACAGCAGCCCTGGATTGCATGCTGC</genome_strand>
        <mrna_strand>CCGATTTTGGCTATAGCTCATTTTTTGGACCCCACCCCTCCAGCGCAATTCCCTCCTATTGCCAACCTAGCTTGTTGTCTTATTGAAATTTCACATCCATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTTGATTCTTTTGGTGGAAACGTGGGGTTACTGAATTTTTTCAGTATGTGTTTGACTTTAGCTGTTATCGAACAAAGGAGAATATTCTGTTCTTTATGAAGGAATAGGAGTGAGATTGGAGTTAAGAGAAGGAAATTATGTATCGGCCTGTAGAAACTACTACCCGAGGAGGGGTACCAACTGATAGTGGAGATTCTGTGGTGACACTGGATCAAGTTCCACGTTGGATTGATTCTGACATTAGGTACTTGTATGAGAATGAAGACCCTAATTCCGACTATGCAGATCCTTTGTCATCTGCTTCAGGGTCTGAGGGCAATGCGAATGGTATCGTTTCCAAGTTTCCTGTGGATCATGAGATTAACTCCAAGATATACCTGTGGAGAGGAGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACAAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAGATGAAGCACACAGCAGCCCTGGATTGCATGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306242" ref_strand="+" ref_description="SGN-E306242 [cLEY-13-F10]">
      <seq>ccgattttggctatagctcattttttggaccccacccctccagcacaattccctcctattgccaacctagcttgttgtcttgttgaaatttcacatccattcacaggtgattttcttgaagaattctcaaagggggatttgattcttttggtggaaacgtggggttactgaattttttcagtatgtgtttgactttagctgttatcgaacaaaggagaatattctgttctttatgaaggaataggagtgagattcgagttaagagaaggaaattatgtatcggcctgtagcaactactacccgaggaggggtaccaactgatagtggagattctgtggtgacactggatcaagttccacgttggattgattctgacattaggtacttgtatgagaatgaagaccctaattccgactatgcagatcctttgtcatctgcttcaaggtctgagggcaatgcgaatggtattgtttccaagtttcctgtggatcatgagattaactccaagatatacctgtggagaggagacccctggaatctcgaagtagatgctgttgttaactctaccaatgagaatttagatgaagcacacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="75017" stop="77667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75317" g_stop="75449" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75450" i_stop="75845" i_length="396">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75846" g_stop="76286" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="574" r_length="441" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76287" i_stop="77346" i_length="1060">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77347" g_stop="77367" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="595" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E306242" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75317" e_stop="75449"/>
          <exon e_start="75846" e_stop="76286"/>
          <exon e_start="77347" e_stop="77367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATTTTGGCTATAGCTCATTTTTTGGACCCCACCCCTCCAGCACAATTCCCTCCTATTGCCAACCTAGCTTGTTGTCTTGTTGAAATTTCACATCCATTCACAGGTGATTTTCTTGAAGAATTCTCAAAGGGTATGTGTTTTGTTGATGATTTTGTTGATATGTTAGTTTTTTTTCTTTGTGGGGTAATGTATATGTGATTCTTGAATCTGGTTGAAGAACCTTTAAATTGTGTTTTGTTGGTATAGGTTCTGTTGAGGTTGTAATTTTGTTAAGTTTGATCAATTGGATGGTTTCTTGGTTTAATTTTTAAAAATGGGGTTGTTTTTGTTGATTTTGATGTAGTGATAATGAATTAATGATGTTTTGCTCAATTGAATTTGTGGGGGTTGAGGTTTAGTTTAGTATGATGAGCAATTTTAGATGTAAAGATTGGATTTTTATTGGGAATTATACCTATTTCCAGCTTAAGTTTTGTGGTGTTTTGTCCTGTGTATGGAGTTGGATAATACTTTGTGTTCTTTTCAGGGGATTTGATTCTTTTGGTGGAAACGTGGGGTTACTGAATTTTTTCAGTATGTGTTTGACTTTAGCTGTTATCGAACAAAGGAGAATATTCTGTTCTTTATGAAGGAATAGGAGTGAGATTCGAGTTAAGAGAAGGAAATTATGTATCGGCCTGTAGCAACTACTACCCGAGGAGGGGTACCAACTGATAGTGGAGATTCTGTGGTGACACTGGATCAAGTTCCACGTTGGATTGATTCTGACATTAGGTACTTGTATGAGAATGAAGACCCTAATTCCGACTATGCAGATCCTTTGTCATCTGCTTCAGGGTCTGAGGGCAATGCGAATGGTATTGTTTCCAAGTTTCCTGTGGATCATGAGATTAACTCCAAGATATACCTGTGGAGAGGAGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACAAATGAGGTGAGAAGTAACTTCTAGATAATTGTATGTTGTGATCTTTGTATTTATTTTGATTAGGTTTCTTGACATACGTAGTATTTGCTTCTTCTGTGGATTAACATTGCATTGTTTGTTTTTAAATTTGGAGAGTAAGGGATCAAATAGTATGTGTGTTTTTAAATTTGGAGAGTAAGGGATTAAATAGTATGTGTGCTTGCATCCGTTCTCTGAGGTTGTGACAGAAACATGAACTTGCACCAACAGACTAGCTAAAGAATTTGGGTTTTCATTGAAATATTGAGTTCCAAGTAGGGTACTTTTGTGTCTGATTTGAGTAAATACAGTAGGGAGTAGGGGATACTTAGAGTTATATGCTTTTTCATGAGCTAGTTATCATGGTCAATAAGTGGGTTCAGTACTCAAATACAAAAAACCCTGGATGATCTCCTACTCATCTACCTAACCTTGGTGGCAGAGTTACCCTATATGTAGATATACTGGTGGGAGGTAGTAGGTACACAGTGGAATAGTTGAGGTGCATGTAGTTATCCCCGACATCACTGTTATAAATAAGAAGAAGACTTTAAAGAGCCAAAAAGGTAGAATATATTTCAATCCTGTTCCTATTTCTTTAAGGGACGGGGTAAGTATGTTTGGGGTACTTTATCCATAAAAAGTGGTACAAGTGGATGTATTTTGATTCTACCAACAATGGGAGGAGTAATATCTATTCAAATTTGCATTCTATTTCTACTTTGCAAGTTTATCATAACCTAGAAGTACCTAGAAACTGACACACGTATATGTAGGCTTTGGATGAGTCTTCTGTTTTTTCCTGGAAATATGTGTCTTACTTGACATCTTCCCAAAAGATCATAAGGTCGACCAGTGTGATGATTAAATTCATTTCCATACATACCATCTATTTAAGATATGTCTGCACTTGTTCTAATTTGTGCAATTTCAGTAAGAAATTTGTAGAAATGTAGAGACCAGTAATTATTGCAATTAACTACATCAAGAAAACACTTTTCTGTCAGTGGAATCGTTGACAATTATACTTCAATTTTGTGCTCAACAGAATTTAGATGAAGCACACAGC</genome_strand>
        <mrna_strand>CCGATTTTGGCTATAGCTCATTTTTTGGACCCCACCCCTCCAGCACAATTCCCTCCTATTGCCAACCTAGCTTGTTGTCTTGTTGAAATTTCACATCCATTCACAGGTGATTTTCTTGAAGAATTCTCAAAGG............................................................................................................................................................................................................................................................................................................................................................................................................GGGATTTGATTCTTTTGGTGGAAACGTGGGGTTACTGAATTTTTTCAGTATGTGTTTGACTTTAGCTGTTATCGAACAAAGGAGAATATTCTGTTCTTTATGAAGGAATAGGAGTGAGATTCGAGTTAAGAGAAGGAAATTATGTATCGGCCTGTAGCAACTACTACCCGAGGAGGGGTACCAACTGATAGTGGAGATTCTGTGGTGACACTGGATCAAGTTCCACGTTGGATTGATTCTGACATTAGGTACTTGTATGAGAATGAAGACCCTAATTCCGACTATGCAGATCCTTTGTCATCTGCTTCAAGGTCTGAGGGCAATGCGAATGGTATTGTTTCCAAGTTTCCTGTGGATCATGAGATTAACTCCAAGATATACCTGTGGAGAGGAGACCCCTGGAATCTCGAAGTAGATGCTGTTGTTAACTCTACCAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAGATGAAGCACACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326736" ref_strand="+" ref_description="SGN-E326736 [cTOC-25-G11]">
      <seq>acaggtgattttcttgaagaattctcaaagggggatttgattcttttggtggaaacgtggggttactgaatttttttcagtatgtgtttgactttagctgttatcgaacaaaggagaatattctgttctttatgaaggaataggagtgagattcgagttaagagaaggaaattatgtatcggcctgtagcaactactacccgaggaggggtaccaactgatagtggagattctgtggtgacactggatcaagttccacgttggattgattctgacattaggtacttgtatgagaatgaagaccctaattccgactatgcagatcctttgtcatctgcttcagggtctgagggcaatgcgaatggtattgtttccaagtttcctgtggatcatgagattaactccaagatatacctgtggagaggagacccctggaatctcgaggtagatgctgttgttaactctacaaatgagaatttagatgaagcacacagcagccctggattgcatgctgcagctggacctggacttgcagaggaatgtgctacactcggaggatgccggacaggaatggcaaaagttaccaatgcttatgatctccctgctangagggtcattcacactgttggtccgaagtatgcggtaaaataccacactgctgccgagaacgctctaagtcattgctatcgctcttgccttgaaacttctatagaaaatggattacagagcattgcgatgggctgtatctatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="75119" stop="79577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75419" g_stop="75449" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75450" i_stop="75845" i_length="396">
            <donor d_prob="0.951" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75846" g_stop="76286" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="473" r_length="442" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76287" i_stop="77346" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77347" g_stop="77424" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="551" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77425" i_stop="77704" i_length="280">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77705" g_stop="77760" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="607" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77761" i_stop="79132" i_length="1372">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79133" g_stop="79252" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="727" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79253" i_stop="79407" i_length="155">
            <donor d_prob="0.812" d_score="0.92"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79408" g_stop="79431" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="751" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E326736" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75419" e_stop="75449"/>
          <exon e_start="75846" e_stop="76286"/>
          <exon e_start="77347" e_stop="77424"/>
          <exon e_start="77705" e_stop="77760"/>
          <exon e_start="79133" e_stop="79252"/>
          <exon e_start="79408" e_stop="79431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGTGATTTTCTTGAAGAATTCTCAAAGGGTATGTGTTTTGTTGATGATTTTGTTGATATGTTAGTTTTTTTTCTTTGTGGGGTAATGTATATGTGATTCTTGAATCTGGTTGAAGAACCTTTAAATTGTGTTTTGTTGGTATAGGTTCTGTTGAGGTTGTAATTTTGTTAAGTTTGATCAATTGGATGGTTTCTTGGTTTAATTTTTAAAAATGGGGTTGTTTTTGTTGATTTTGATGTAGTGATAATGAATTAATGATGTTTTGCTCAATTGAATTTGTGGGGGTTGAGGTTTAGTTTAGTATGATGAGCAATTTTAGATGTAAAGATTGGATTTTTATTGGGAATTATACCTATTTCCAGCTTAAGTTTTGTGGTGTTTTGTCCTGTGTATGGAGTTGGATAATACTTTGTGTTCTTTTCAGGGGATTTGATTCTTTTGGTGGAAACGTGGGGTTACTGAATTTTTT-CAGTATGTGTTTGACTTTAGCTGTTATCGAACAAAGGAGAATATTCTGTTCTTTATGAAGGAATAGGAGTGAGATTCGAGTTAAGAGAAGGAAATTATGTATCGGCCTGTAGCAACTACTACCCGAGGAGGGGTACCAACTGATAGTGGAGATTCTGTGGTGACACTGGATCAAGTTCCACGTTGGATTGATTCTGACATTAGGTACTTGTATGAGAATGAAGACCCTAATTCCGACTATGCAGATCCTTTGTCATCTGCTTCAGGGTCTGAGGGCAATGCGAATGGTATTGTTTCCAAGTTTCCTGTGGATCATGAGATTAACTCCAAGATATACCTGTGGAGAGGAGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACAAATGAGGTGAGAAGTAACTTCTAGATAATTGTATGTTGTGATCTTTGTATTTATTTTGATTAGGTTTCTTGACATACGTAGTATTTGCTTCTTCTGTGGATTAACATTGCATTGTTTGTTTTTAAATTTGGAGAGTAAGGGATCAAATAGTATGTGTGTTTTTAAATTTGGAGAGTAAGGGATTAAATAGTATGTGTGCTTGCATCCGTTCTCTGAGGTTGTGACAGAAACATGAACTTGCACCAACAGACTAGCTAAAGAATTTGGGTTTTCATTGAAATATTGAGTTCCAAGTAGGGTACTTTTGTGTCTGATTTGAGTAAATACAGTAGGGAGTAGGGGATACTTAGAGTTATATGCTTTTTCATGAGCTAGTTATCATGGTCAATAAGTGGGTTCAGTACTCAAATACAAAAAACCCTGGATGATCTCCTACTCATCTACCTAACCTTGGTGGCAGAGTTACCCTATATGTAGATATACTGGTGGGAGGTAGTAGGTACACAGTGGAATAGTTGAGGTGCATGTAGTTATCCCCGACATCACTGTTATAAATAAGAAGAAGACTTTAAAGAGCCAAAAAGGTAGAATATATTTCAATCCTGTTCCTATTTCTTTAAGGGACGGGGTAAGTATGTTTGGGGTACTTTATCCATAAAAAGTGGTACAAGTGGATGTATTTTGATTCTACCAACAATGGGAGGAGTAATATCTATTCAAATTTGCATTCTATTTCTACTTTGCAAGTTTATCATAACCTAGAAGTACCTAGAAACTGACACACGTATATGTAGGCTTTGGATGAGTCTTCTGTTTTTTCCTGGAAATATGTGTCTTACTTGACATCTTCCCAAAAGATCATAAGGTCGACCAGTGTGATGATTAAATTCATTTCCATACATACCATCTATTTAAGATATGTCTGCACTTGTTCTAATTTGTGCAATTTCAGTAAGAAATTTGTAGAAATGTAGAGACCAGTAATTATTGCAATTAACTACATCAAGAAAACACTTTTCTGTCAGTGGAATCGTTGACAATTATACTTCAATTTTGTGCTCAACAGAATTTAGATGAAGCACACAGCAGCCCTGGATTGCATGCTGCAGCTGGACCTGGACTTGCAGAGGAATGTGCTACACTCGTAGGTTCCTCAATGTTTCATATGTTTTCCAGATTTTTCAAAACTTAATTCCTGAATGGATTCACAAATAGGGTCAGAAGCATAATTTGTGGCAACCAATCAACCTCAAACAGTTCCCTTACATTTTTATGGGAGCAGTTTCTTTAGATTTATTTCTTGCACTTTCTGTTTGTTCCAGCTTAAAAATGCTATTTAACTTCTTTTTCAACTGTTGGCCCTTGTATTCAACTTATGATGGTTACACTAGAAAGATTTATGTACAATTTACATTGTTTCATAGGGAGGATGCCGGACAGGAATGGCAAAAGTTACCAATGCTTATGATCTCCCTGCTAGGTGGGTGATTTTTATAAACTTTGTGCATTATTGTTGAGTATGTTAGTAACTGACTTCTTTTTAAGTTGATCTGCAATACCTTATCTTTACATATGCAATAATGATCACTAGTAAATCTTTAACTAGTCGAAGTCAGCTATGTGAACACCCTACATCTATTCTACTCCATCAAGGCATAGTTCATTCAGTACTCAATTATTTGTACTATAGGACAAATCATGGATTCTTAAAAATTAGGGATTTTCTCAATCTCACATCTGTCCATGCATCGTCATACGATCGGAACCAAACTCAAACGATTTCTGCAAAAAATCGGGCTCAGTGTAAAAGCACCACCAACAACTAACTTTAACTGCAACTGGTTGGTGGTGCCTATATGGATGCTTTGCTTTCATTGTGTGTTCTATTATTCGCTAAATCTGCAAGAATTCAAAGAAATTCTATTTCTTTTGAGACAACTTCCCTTCATGTGATTTTTTGGTCCCTCTTGGTACCTTCTGTGATCATGGTAACGTCCTTATACAAAAGAAGAACTCACCTATGAACCGGCGTATTTGGAGCTCTCCTTAAAAAATTTAGCTGTTTCCATCAATGCCCACTTTTCGAGTATGTTCACATAGTGAAGGAAATAGGGGTGGAATCTGTGAACAGCTAAGCTGGTCTTCAATGGGAAAAAAAGAGCATATGTATATTGAAGTATCAGCTGCAAACCACTCAGGGATATCCATGACCTGTCTACTTCACCAAAACCTCACAATACATGGTGTTTGAGTTGGTTATGAAATTGCTATATGAAAGCCAGGCTGCAATTGTATCTGGCAAAAAAGATAAGTTGTTTCATGATCATGAACAATGTGATTGTACTTGTGTTGGATTATCTAAATAATGATCCGATAATGTGAGAGTCTAAAGAAAATATTCGATCTTATTCTTTGACATCATGGTTGGGAGGAAGTACGGCATATCTCAATTCATGCCACTAACCTAACTATATTGTTTTCTCCAGAGCTACTGATGAAAACTGAAGTCATCAAGCTCCTATATCTTACTTTTTACACTCTAATAAGAAAATCGTCATGCCGCTTAACATTTTTTTATTTGAATGGTGATGGCTGGGTGTTGACTGTTGAACAGTAGTAGTAGTATAAATGCATTCCTGTATCACCCTATTTTTTTCATAGTAAAGTAAAATTAATTAAAATAAAAAAATAAGTAAATTACCGTTGATCAAGGTATGAAAAAAGAAAAAGAAATATTCAATGTTCTCTTGCCGTTTGAACTTAGTTCATGATTTTCATCACAATTTTTGCATGGAACAAATGCAGCATAATCATAAGCCTTTGACGTACTGCTGATTGAGTTTCGTGTGCAGGAGGGTCATTCACACTGTTGGTCCGAAGTATGCGGTAAAATACCACACTGCTGCCGAGAACGCTCTAAGTCATTGCTATCGCTCTTGCCTTGAACTTCTTATAGAAAATGGATTACAGAGGTTATCTAATGTTCATATGTTCTGTGGGTTGTTATTAATGCCGTGATTTTGATTAATAAAAGGAAAAAGGGAGAGCCACTCCCTTGGTTTCCTTTTTATTTTAGAGGTTTCAAATATTTAAAACGCTACTTACTATGCTGGTTTATGTAGTGCAGCATTGCGATGGGCTGTATCTATAC</genome_strand>
        <mrna_strand>ACAGGTGATTTTCTTGAAGAATTCTCAAAGG............................................................................................................................................................................................................................................................................................................................................................................................................GGGATTTGATTCTTTTGGTGGAAACGTGGGGTTACTGAATTTTTTTCAGTATGTGTTTGACTTTAGCTGTTATCGAACAAAGGAGAATATTCTGTTCTTTATGAAGGAATAGGAGTGAGATTCGAGTTAAGAGAAGGAAATTATGTATCGGCCTGTAGCAACTACTACCCGAGGAGGGGTACCAACTGATAGTGGAGATTCTGTGGTGACACTGGATCAAGTTCCACGTTGGATTGATTCTGACATTAGGTACTTGTATGAGAATGAAGACCCTAATTCCGACTATGCAGATCCTTTGTCATCTGCTTCAGGGTCTGAGGGCAATGCGAATGGTATTGTTTCCAAGTTTCCTGTGGATCATGAGATTAACTCCAAGATATACCTGTGGAGAGGAGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACAAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAGATGAAGCACACAGCAGCCCTGGATTGCATGCTGCAGCTGGACCTGGACTTGCAGAGGAATGTGCTACACTC........................................................................................................................................................................................................................................................................................GGAGGATGCCGGACAGGAATGGCAAAAGTTACCAATGCTTATGATCTCCCTGCTAN............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTCATTCACACTGTTGGTCCGAAGTATGCGGTAAAATACCACACTGCTGCCGAGAACGCTCTAAGTCATTGCTATCGCTCTTGCCTTGAAACTTCTATAGAAAATGGATTACAGAG...........................................................................................................................................................CATTGCGATGGGCTGTATCTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276492" ref_strand="+" ref_description="SGN-E276492 [cLEN-17-A9]">
      <seq>ttactgaattttttcagtatgtgtttgactttagctgttatcgaacaaaggagaatattctgttctttatgaaggaataggagtgagattcgagttaagagaaggaaattatgtatcggcctgtagcaactactacccgaggaggggtaccaactgatagtggagattctgtggtgacactggatcaagttccacgttggattgattctgacattaggtacttgtatgagaatgaagaccctaattccgactatgcagatcctttgtcatctgcttcagggtctgagggcaatgcgaatggtattgtttccaagtttcctgtggatcatgagattaactccaagatatacctgtggagaggagacccctggaatctcgaggtagatgctgttgttaactctacaaatgagaatttagatgaagcacacagcagccctggattgcatgctgcagctggacctggacttgcagaggaatgtgctacactcggaggatgccggacaggaatggcaaaagttaccaatgcttatgatctccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="75577" stop="78055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75877" g_stop="76286" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76287" i_stop="77346" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77347" g_stop="77424" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="488" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77425" i_stop="77704" i_length="280">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77705" g_stop="77755" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="539" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E276492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75877" e_stop="76286"/>
          <exon e_start="77347" e_stop="77424"/>
          <exon e_start="77705" e_stop="77755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTGAATTTTTTCAGTATGTGTTTGACTTTAGCTGTTATCGAACAAAGGAGAATATTCTGTTCTTTATGAAGGAATAGGAGTGAGATTCGAGTTAAGAGAAGGAAATTATGTATCGGCCTGTAGCAACTACTACCCGAGGAGGGGTACCAACTGATAGTGGAGATTCTGTGGTGACACTGGATCAAGTTCCACGTTGGATTGATTCTGACATTAGGTACTTGTATGAGAATGAAGACCCTAATTCCGACTATGCAGATCCTTTGTCATCTGCTTCAGGGTCTGAGGGCAATGCGAATGGTATTGTTTCCAAGTTTCCTGTGGATCATGAGATTAACTCCAAGATATACCTGTGGAGAGGAGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACAAATGAGGTGAGAAGTAACTTCTAGATAATTGTATGTTGTGATCTTTGTATTTATTTTGATTAGGTTTCTTGACATACGTAGTATTTGCTTCTTCTGTGGATTAACATTGCATTGTTTGTTTTTAAATTTGGAGAGTAAGGGATCAAATAGTATGTGTGTTTTTAAATTTGGAGAGTAAGGGATTAAATAGTATGTGTGCTTGCATCCGTTCTCTGAGGTTGTGACAGAAACATGAACTTGCACCAACAGACTAGCTAAAGAATTTGGGTTTTCATTGAAATATTGAGTTCCAAGTAGGGTACTTTTGTGTCTGATTTGAGTAAATACAGTAGGGAGTAGGGGATACTTAGAGTTATATGCTTTTTCATGAGCTAGTTATCATGGTCAATAAGTGGGTTCAGTACTCAAATACAAAAAACCCTGGATGATCTCCTACTCATCTACCTAACCTTGGTGGCAGAGTTACCCTATATGTAGATATACTGGTGGGAGGTAGTAGGTACACAGTGGAATAGTTGAGGTGCATGTAGTTATCCCCGACATCACTGTTATAAATAAGAAGAAGACTTTAAAGAGCCAAAAAGGTAGAATATATTTCAATCCTGTTCCTATTTCTTTAAGGGACGGGGTAAGTATGTTTGGGGTACTTTATCCATAAAAAGTGGTACAAGTGGATGTATTTTGATTCTACCAACAATGGGAGGAGTAATATCTATTCAAATTTGCATTCTATTTCTACTTTGCAAGTTTATCATAACCTAGAAGTACCTAGAAACTGACACACGTATATGTAGGCTTTGGATGAGTCTTCTGTTTTTTCCTGGAAATATGTGTCTTACTTGACATCTTCCCAAAAGATCATAAGGTCGACCAGTGTGATGATTAAATTCATTTCCATACATACCATCTATTTAAGATATGTCTGCACTTGTTCTAATTTGTGCAATTTCAGTAAGAAATTTGTAGAAATGTAGAGACCAGTAATTATTGCAATTAACTACATCAAGAAAACACTTTTCTGTCAGTGGAATCGTTGACAATTATACTTCAATTTTGTGCTCAACAGAATTTAGATGAAGCACACAGCAGCCCTGGATTGCATGCTGCAGCTGGACCTGGACTTGCAGAGGAATGTGCTACACTCGTAGGTTCCTCAATGTTTCATATGTTTTCCAGATTTTTCAAAACTTAATTCCTGAATGGATTCACAAATAGGGTCAGAAGCATAATTTGTGGCAACCAATCAACCTCAAACAGTTCCCTTACATTTTTATGGGAGCAGTTTCTTTAGATTTATTTCTTGCACTTTCTGTTTGTTCCAGCTTAAAAATGCTATTTAACTTCTTTTTCAACTGTTGGCCCTTGTATTCAACTTATGATGGTTACACTAGAAAGATTTATGTACAATTTACATTGTTTCATAGGGAGGATGCCGGACAGGAATGGCAAAAGTTACCAATGCTTATGATCTCCCT</genome_strand>
        <mrna_strand>TTACTGAATTTTTTCAGTATGTGTTTGACTTTAGCTGTTATCGAACAAAGGAGAATATTCTGTTCTTTATGAAGGAATAGGAGTGAGATTCGAGTTAAGAGAAGGAAATTATGTATCGGCCTGTAGCAACTACTACCCGAGGAGGGGTACCAACTGATAGTGGAGATTCTGTGGTGACACTGGATCAAGTTCCACGTTGGATTGATTCTGACATTAGGTACTTGTATGAGAATGAAGACCCTAATTCCGACTATGCAGATCCTTTGTCATCTGCTTCAGGGTCTGAGGGCAATGCGAATGGTATTGTTTCCAAGTTTCCTGTGGATCATGAGATTAACTCCAAGATATACCTGTGGAGAGGAGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACAAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAGATGAAGCACACAGCAGCCCTGGATTGCATGCTGCAGCTGGACCTGGACTTGCAGAGGAATGTGCTACACTC........................................................................................................................................................................................................................................................................................GGAGGATGCCGGACAGGAATGGCAAAAGTTACCAATGCTTATGATCTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263365" ref_strand="+" ref_description="SGN-E263365 [cLEG-62-J1]">
      <seq>ttccgactatgcagatcctttgtcatctgcttcagggtctgagggcaatgctaatggtattgtttccaagtttcctgtggatcatgagattaactccaagatatacctgtggagaggagacccctggaatctcgaggtagatgctgttgttaactctacaaatgagaatttagatgaagcacacagcagccctggattgcatgctgcagctggacctggacttgcagaggaatgtgctacactcggaggatgccggacaggaatggcaaaagttaccaatgcttatgatctccctgctaggagggtcattcacactgttggtccgaagtatgcggtaaaataccacactgctgccgagaacgctctaagtcattgctatcgctcttgccttgaacttcttatagaaaatggattacagagcattgcgatgggctgtatctataccgaagccaaaaattacccgcgagaacctgctgctcatgttgcaataagaactgtacggcggtttcttgagaaacagaaagataaaatagaggcagtcgttttctgtacaactacctcatccgatacggagatatataaaagattgcttcctctttacttcccccggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="75821" stop="80204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76121" g_stop="76286" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76287" i_stop="77346" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77347" g_stop="77424" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="244" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77425" i_stop="77704" i_length="280">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77705" g_stop="77760" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="300" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77761" i_stop="79132" i_length="1372">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79133" g_stop="79252" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="420" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79253" i_stop="79407" i_length="155">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79408" g_stop="79478" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="491" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79479" i_stop="79683" i_length="205">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79684" g_stop="79777" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="585" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79778" i_stop="79877" i_length="100">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79878" g_stop="79904" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="612" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E263365" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76121" e_stop="76286"/>
          <exon e_start="77347" e_stop="77424"/>
          <exon e_start="77705" e_stop="77760"/>
          <exon e_start="79133" e_stop="79252"/>
          <exon e_start="79408" e_stop="79478"/>
          <exon e_start="79684" e_stop="79777"/>
          <exon e_start="79878" e_stop="79904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGACTATGCAGATCCTTTGTCATCTGCTTCAGGGTCTGAGGGCAATGCGAATGGTATTGTTTCCAAGTTTCCTGTGGATCATGAGATTAACTCCAAGATATACCTGTGGAGAGGAGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACAAATGAGGTGAGAAGTAACTTCTAGATAATTGTATGTTGTGATCTTTGTATTTATTTTGATTAGGTTTCTTGACATACGTAGTATTTGCTTCTTCTGTGGATTAACATTGCATTGTTTGTTTTTAAATTTGGAGAGTAAGGGATCAAATAGTATGTGTGTTTTTAAATTTGGAGAGTAAGGGATTAAATAGTATGTGTGCTTGCATCCGTTCTCTGAGGTTGTGACAGAAACATGAACTTGCACCAACAGACTAGCTAAAGAATTTGGGTTTTCATTGAAATATTGAGTTCCAAGTAGGGTACTTTTGTGTCTGATTTGAGTAAATACAGTAGGGAGTAGGGGATACTTAGAGTTATATGCTTTTTCATGAGCTAGTTATCATGGTCAATAAGTGGGTTCAGTACTCAAATACAAAAAACCCTGGATGATCTCCTACTCATCTACCTAACCTTGGTGGCAGAGTTACCCTATATGTAGATATACTGGTGGGAGGTAGTAGGTACACAGTGGAATAGTTGAGGTGCATGTAGTTATCCCCGACATCACTGTTATAAATAAGAAGAAGACTTTAAAGAGCCAAAAAGGTAGAATATATTTCAATCCTGTTCCTATTTCTTTAAGGGACGGGGTAAGTATGTTTGGGGTACTTTATCCATAAAAAGTGGTACAAGTGGATGTATTTTGATTCTACCAACAATGGGAGGAGTAATATCTATTCAAATTTGCATTCTATTTCTACTTTGCAAGTTTATCATAACCTAGAAGTACCTAGAAACTGACACACGTATATGTAGGCTTTGGATGAGTCTTCTGTTTTTTCCTGGAAATATGTGTCTTACTTGACATCTTCCCAAAAGATCATAAGGTCGACCAGTGTGATGATTAAATTCATTTCCATACATACCATCTATTTAAGATATGTCTGCACTTGTTCTAATTTGTGCAATTTCAGTAAGAAATTTGTAGAAATGTAGAGACCAGTAATTATTGCAATTAACTACATCAAGAAAACACTTTTCTGTCAGTGGAATCGTTGACAATTATACTTCAATTTTGTGCTCAACAGAATTTAGATGAAGCACACAGCAGCCCTGGATTGCATGCTGCAGCTGGACCTGGACTTGCAGAGGAATGTGCTACACTCGTAGGTTCCTCAATGTTTCATATGTTTTCCAGATTTTTCAAAACTTAATTCCTGAATGGATTCACAAATAGGGTCAGAAGCATAATTTGTGGCAACCAATCAACCTCAAACAGTTCCCTTACATTTTTATGGGAGCAGTTTCTTTAGATTTATTTCTTGCACTTTCTGTTTGTTCCAGCTTAAAAATGCTATTTAACTTCTTTTTCAACTGTTGGCCCTTGTATTCAACTTATGATGGTTACACTAGAAAGATTTATGTACAATTTACATTGTTTCATAGGGAGGATGCCGGACAGGAATGGCAAAAGTTACCAATGCTTATGATCTCCCTGCTAGGTGGGTGATTTTTATAAACTTTGTGCATTATTGTTGAGTATGTTAGTAACTGACTTCTTTTTAAGTTGATCTGCAATACCTTATCTTTACATATGCAATAATGATCACTAGTAAATCTTTAACTAGTCGAAGTCAGCTATGTGAACACCCTACATCTATTCTACTCCATCAAGGCATAGTTCATTCAGTACTCAATTATTTGTACTATAGGACAAATCATGGATTCTTAAAAATTAGGGATTTTCTCAATCTCACATCTGTCCATGCATCGTCATACGATCGGAACCAAACTCAAACGATTTCTGCAAAAAATCGGGCTCAGTGTAAAAGCACCACCAACAACTAACTTTAACTGCAACTGGTTGGTGGTGCCTATATGGATGCTTTGCTTTCATTGTGTGTTCTATTATTCGCTAAATCTGCAAGAATTCAAAGAAATTCTATTTCTTTTGAGACAACTTCCCTTCATGTGATTTTTTGGTCCCTCTTGGTACCTTCTGTGATCATGGTAACGTCCTTATACAAAAGAAGAACTCACCTATGAACCGGCGTATTTGGAGCTCTCCTTAAAAAATTTAGCTGTTTCCATCAATGCCCACTTTTCGAGTATGTTCACATAGTGAAGGAAATAGGGGTGGAATCTGTGAACAGCTAAGCTGGTCTTCAATGGGAAAAAAAGAGCATATGTATATTGAAGTATCAGCTGCAAACCACTCAGGGATATCCATGACCTGTCTACTTCACCAAAACCTCACAATACATGGTGTTTGAGTTGGTTATGAAATTGCTATATGAAAGCCAGGCTGCAATTGTATCTGGCAAAAAAGATAAGTTGTTTCATGATCATGAACAATGTGATTGTACTTGTGTTGGATTATCTAAATAATGATCCGATAATGTGAGAGTCTAAAGAAAATATTCGATCTTATTCTTTGACATCATGGTTGGGAGGAAGTACGGCATATCTCAATTCATGCCACTAACCTAACTATATTGTTTTCTCCAGAGCTACTGATGAAAACTGAAGTCATCAAGCTCCTATATCTTACTTTTTACACTCTAATAAGAAAATCGTCATGCCGCTTAACATTTTTTTATTTGAATGGTGATGGCTGGGTGTTGACTGTTGAACAGTAGTAGTAGTATAAATGCATTCCTGTATCACCCTATTTTTTTCATAGTAAAGTAAAATTAATTAAAATAAAAAAATAAGTAAATTACCGTTGATCAAGGTATGAAAAAAGAAAAAGAAATATTCAATGTTCTCTTGCCGTTTGAACTTAGTTCATGATTTTCATCACAATTTTTGCATGGAACAAATGCAGCATAATCATAAGCCTTTGACGTACTGCTGATTGAGTTTCGTGTGCAGGAGGGTCATTCACACTGTTGGTCCGAAGTATGCGGTAAAATACCACACTGCTGCCGAGAACGCTCTAAGTCATTGCTATCGCTCTTGCCTTGAACTTCTTATAGAAAATGGATTACAGAGGTTATCTAATGTTCATATGTTCTGTGGGTTGTTATTAATGCCGTGATTTTGATTAATAAAAGGAAAAAGGGAGAGCCACTCCCTTGGTTTCCTTTTTATTTTAGAGGTTTCAAATATTTAAAACGCTACTTACTATGCTGGTTTATGTAGTGCAGCATTGCGATGGGCTGTATCTATACCGAAGCCAAAAATTACCCGCGAGAACCTGCTGCTCATGTTGCAATAAGTAATATATCTCTCTGTTTTCTTAATAAATTGCTTATCTGTTCGTTATTTGATTTTCAAATAAAGATAAAGATAATTCTTTCTGTGCTGAGACTGGAAAGAACTGATATCTCCTTCAGAAAGATCCCCTCATATTAAATATATTTGCTTAAATGTTTTATCTGCCAGTTGTTGAATGTAACTCCATCTTTTATTGTTTTGATTAGGAACTGTACGGCGGTTTCTTGAGAAACAGAAAGATAAAATAGAGGCAGTCGTTTTCTGTACAACTACATCATCCGATACGGAGATATATAAAAGGTATACTTGGTACATTGTTTTCTACTATATACTTGAGAGGGTGCAAGCATTGTGTATATTGTTTTGGCTGTTAAAATTTACAGTATCTTTGATTTTGCAGATTGCTTCCTCTTTACTTCCCCCGGGA</genome_strand>
        <mrna_strand>TTCCGACTATGCAGATCCTTTGTCATCTGCTTCAGGGTCTGAGGGCAATGCTAATGGTATTGTTTCCAAGTTTCCTGTGGATCATGAGATTAACTCCAAGATATACCTGTGGAGAGGAGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACAAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAGATGAAGCACACAGCAGCCCTGGATTGCATGCTGCAGCTGGACCTGGACTTGCAGAGGAATGTGCTACACTC........................................................................................................................................................................................................................................................................................GGAGGATGCCGGACAGGAATGGCAAAAGTTACCAATGCTTATGATCTCCCTGCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTCATTCACACTGTTGGTCCGAAGTATGCGGTAAAATACCACACTGCTGCCGAGAACGCTCTAAGTCATTGCTATCGCTCTTGCCTTGAACTTCTTATAGAAAATGGATTACAGAG...........................................................................................................................................................CATTGCGATGGGCTGTATCTATACCGAAGCCAAAAATTACCCGCGAGAACCTGCTGCTCATGTTGCAATAA.............................................................................................................................................................................................................GAACTGTACGGCGGTTTCTTGAGAAACAGAAAGATAAAATAGAGGCAGTCGTTTTCTGTACAACTACCTCATCCGATACGGAGATATATAAAAG....................................................................................................ATTGCTTCCTCTTTACTTCCCCCGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306622" ref_strand="+" ref_description="SGN-E306622 [cLEY-19-O11]">
      <seq>gcatatcctttgtcatctgcttcacggtctgagggcaatgcgaatggtattgtttccaagtttcctgtggatcatgagattaactccaagatatacctgtggagacgagacccctggaatctctaggtaaatgctgttgtttactctacaaatgagaatgttaattaatcactacttcagccctggattgcatgctgcagctggacctggacttgcagaggaatgtgctacactcggaggatgccggacaggaatggcaaaagttaccaatgcttatgatctccctgctaggagggtcattcacactgttggtccgaattatgcggtaaaataccacactgctgccgaaaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="75831" stop="79495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76131" g_stop="76286" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76287" i_stop="77346" i_length="1060">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77347" g_stop="77424" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="235" r_length="79" r_score="0.885"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77425" i_stop="77704" i_length="280">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77705" g_stop="77760" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="291" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77761" i_stop="79132" i_length="1372">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79133" g_stop="79195" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="354" r_length="63" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E306622" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76131" e_stop="76286"/>
          <exon e_start="77347" e_stop="77424"/>
          <exon e_start="77705" e_stop="77760"/>
          <exon e_start="79133" e_stop="79195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATCCTTTGTCATCTGCTTCAGGGTCTGAGGGCAATGCGAATGGTATTGTTTCCAAGTTTCCTGTGGATCATGAGATTAACTCCAAGATATACCTGTGGAGAGGAGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACAAATGAGGTGAGAAGTAACTTCTAGATAATTGTATGTTGTGATCTTTGTATTTATTTTGATTAGGTTTCTTGACATACGTAGTATTTGCTTCTTCTGTGGATTAACATTGCATTGTTTGTTTTTAAATTTGGAGAGTAAGGGATCAAATAGTATGTGTGTTTTTAAATTTGGAGAGTAAGGGATTAAATAGTATGTGTGCTTGCATCCGTTCTCTGAGGTTGTGACAGAAACATGAACTTGCACCAACAGACTAGCTAAAGAATTTGGGTTTTCATTGAAATATTGAGTTCCAAGTAGGGTACTTTTGTGTCTGATTTGAGTAAATACAGTAGGGAGTAGGGGATACTTAGAGTTATATGCTTTTTCATGAGCTAGTTATCATGGTCAATAAGTGGGTTCAGTACTCAAATACAAAAAACCCTGGATGATCTCCTACTCATCTACCTAACCTTGGTGGCAGAGTTACCCTATATGTAGATATACTGGTGGGAGGTAGTAGGTACACAGTGGAATAGTTGAGGTGCATGTAGTTATCCCCGACATCACTGTTATAAATAAGAAGAAGACTTTAAAGAGCCAAAAAGGTAGAATATATTTCAATCCTGTTCCTATTTCTTTAAGGGACGGGGTAAGTATGTTTGGGGTACTTTATCCATAAAAAGTGGTACAAGTGGATGTATTTTGATTCTACCAACAATGGGAGGAGTAATATCTATTCAAATTTGCATTCTATTTCTACTTTGCAAGTTTATCATAACCTAGAAGTACCTAGAAACTGACACACGTATATGTAGGCTTTGGATGAGTCTTCTGTTTTTTCCTGGAAATATGTGTCTTACTTGACATCTTCCCAAAAGATCATAAGGTCGACCAGTGTGATGATTAAATTCATTTCCATACATACCATCTATTTAAGATATGTCTGCACTTGTTCTAATTTGTGCAATTTCAGTAAGAAATTTGTAGAAATGTAGAGACCAGTAATTATTGCAATTAACTACATCAAGAAAACACTTTTCTGTCAGTGGAATCGTTGACAATTATACTTCAATTTTGTGCTCAACAGAATTTAGATGAAGCAC-ACAGCAGCCCTGGATTGCATGCTGCAGCTGGACCTGGACTTGCAGAGGAATGTGCTACACTCGTAGGTTCCTCAATGTTTCATATGTTTTCCAGATTTTTCAAAACTTAATTCCTGAATGGATTCACAAATAGGGTCAGAAGCATAATTTGTGGCAACCAATCAACCTCAAACAGTTCCCTTACATTTTTATGGGAGCAGTTTCTTTAGATTTATTTCTTGCACTTTCTGTTTGTTCCAGCTTAAAAATGCTATTTAACTTCTTTTTCAACTGTTGGCCCTTGTATTCAACTTATGATGGTTACACTAGAAAGATTTATGTACAATTTACATTGTTTCATAGGGAGGATGCCGGACAGGAATGGCAAAAGTTACCAATGCTTATGATCTCCCTGCTAGGTGGGTGATTTTTATAAACTTTGTGCATTATTGTTGAGTATGTTAGTAACTGACTTCTTTTTAAGTTGATCTGCAATACCTTATCTTTACATATGCAATAATGATCACTAGTAAATCTTTAACTAGTCGAAGTCAGCTATGTGAACACCCTACATCTATTCTACTCCATCAAGGCATAGTTCATTCAGTACTCAATTATTTGTACTATAGGACAAATCATGGATTCTTAAAAATTAGGGATTTTCTCAATCTCACATCTGTCCATGCATCGTCATACGATCGGAACCAAACTCAAACGATTTCTGCAAAAAATCGGGCTCAGTGTAAAAGCACCACCAACAACTAACTTTAACTGCAACTGGTTGGTGGTGCCTATATGGATGCTTTGCTTTCATTGTGTGTTCTATTATTCGCTAAATCTGCAAGAATTCAAAGAAATTCTATTTCTTTTGAGACAACTTCCCTTCATGTGATTTTTTGGTCCCTCTTGGTACCTTCTGTGATCATGGTAACGTCCTTATACAAAAGAAGAACTCACCTATGAACCGGCGTATTTGGAGCTCTCCTTAAAAAATTTAGCTGTTTCCATCAATGCCCACTTTTCGAGTATGTTCACATAGTGAAGGAAATAGGGGTGGAATCTGTGAACAGCTAAGCTGGTCTTCAATGGGAAAAAAAGAGCATATGTATATTGAAGTATCAGCTGCAAACCACTCAGGGATATCCATGACCTGTCTACTTCACCAAAACCTCACAATACATGGTGTTTGAGTTGGTTATGAAATTGCTATATGAAAGCCAGGCTGCAATTGTATCTGGCAAAAAAGATAAGTTGTTTCATGATCATGAACAATGTGATTGTACTTGTGTTGGATTATCTAAATAATGATCCGATAATGTGAGAGTCTAAAGAAAATATTCGATCTTATTCTTTGACATCATGGTTGGGAGGAAGTACGGCATATCTCAATTCATGCCACTAACCTAACTATATTGTTTTCTCCAGAGCTACTGATGAAAACTGAAGTCATCAAGCTCCTATATCTTACTTTTTACACTCTAATAAGAAAATCGTCATGCCGCTTAACATTTTTTTATTTGAATGGTGATGGCTGGGTGTTGACTGTTGAACAGTAGTAGTAGTATAAATGCATTCCTGTATCACCCTATTTTTTTCATAGTAAAGTAAAATTAATTAAAATAAAAAAATAAGTAAATTACCGTTGATCAAGGTATGAAAAAAGAAAAAGAAATATTCAATGTTCTCTTGCCGTTTGAACTTAGTTCATGATTTTCATCACAATTTTTGCATGGAACAAATGCAGCATAATCATAAGCCTTTGACGTACTGCTGATTGAGTTTCGTGTGCAGGAGGGTCATTCACACTGTTGGTCCGAAGTATGCGGTAAAATACCACACTGCTGCCGAGAACGC</genome_strand>
        <mrna_strand>GCATATCCTTTGTCATCTGCTTCACGGTCTGAGGGCAATGCGAATGGTATTGTTTCCAAGTTTCCTGTGGATCATGAGATTAACTCCAAGATATACCTGTGGAGACGAGACCCCTGGAATCTCTAGGTAAATGCTGTTGTTTACTCTACAAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTAATTAATCACTACTTCAGCCCTGGATTGCATGCTGCAGCTGGACCTGGACTTGCAGAGGAATGTGCTACACTC........................................................................................................................................................................................................................................................................................GGAGGATGCCGGACAGGAATGGCAAAAGTTACCAATGCTTATGATCTCCCTGCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTCATTCACACTGTTGGTCCGAATTATGCGGTAAAATACCACACTGCTGCCGAAAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306701" ref_strand="+" ref_description="SGN-E306701 [cLEY-19-O21]">
      <seq>atcctttgtcatctgcttcaaggtctgagggcaatgctaatggtattgtttccaagtttcctgtggatcatgagattaactccaagatatacctgtggagaggagacccctggaatctcgaggtagatgctgttgttaactctacaaatgagaatttagatgaagcacacagcagccctggattgcatgctgcagctggacctggacttgcagaggaatgtgctacactcggaggatgccggacaggaatggcaaaagttaccaatgcttatgatctccctgctaggagggtcattcacactgttggtccgaagtatgcggtaaaataccacactgctgccgagaacgctctaagtcattgctatcgctcttgccttgaacttcttatagaaaatggattacagagcattgcgatgggctgtatctataccgaagccaaaaattacccgcgagaacctgctgctcatgttgcaataagaactgtacggcggtttcttgagaaacagaaagataaaatagaggcagtcgttttctgtacaactacatcatccgatacggagatatataaaagattgcttcctctttacttcccccgggataatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="75835" stop="80210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76135" g_stop="76286" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76287" i_stop="77346" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77347" g_stop="77424" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="230" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77425" i_stop="77704" i_length="280">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77705" g_stop="77760" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="286" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77761" i_stop="79132" i_length="1372">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79133" g_stop="79252" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="406" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79253" i_stop="79407" i_length="155">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79408" g_stop="79478" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="477" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79479" i_stop="79683" i_length="205">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79684" g_stop="79777" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="571" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79778" i_stop="79877" i_length="100">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79878" g_stop="79910" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="604" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E306701" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76135" e_stop="76286"/>
          <exon e_start="77347" e_stop="77424"/>
          <exon e_start="77705" e_stop="77760"/>
          <exon e_start="79133" e_stop="79252"/>
          <exon e_start="79408" e_stop="79478"/>
          <exon e_start="79684" e_stop="79777"/>
          <exon e_start="79878" e_stop="79910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTTTGTCATCTGCTTCAGGGTCTGAGGGCAATGCGAATGGTATTGTTTCCAAGTTTCCTGTGGATCATGAGATTAACTCCAAGATATACCTGTGGAGAGGAGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACAAATGAGGTGAGAAGTAACTTCTAGATAATTGTATGTTGTGATCTTTGTATTTATTTTGATTAGGTTTCTTGACATACGTAGTATTTGCTTCTTCTGTGGATTAACATTGCATTGTTTGTTTTTAAATTTGGAGAGTAAGGGATCAAATAGTATGTGTGTTTTTAAATTTGGAGAGTAAGGGATTAAATAGTATGTGTGCTTGCATCCGTTCTCTGAGGTTGTGACAGAAACATGAACTTGCACCAACAGACTAGCTAAAGAATTTGGGTTTTCATTGAAATATTGAGTTCCAAGTAGGGTACTTTTGTGTCTGATTTGAGTAAATACAGTAGGGAGTAGGGGATACTTAGAGTTATATGCTTTTTCATGAGCTAGTTATCATGGTCAATAAGTGGGTTCAGTACTCAAATACAAAAAACCCTGGATGATCTCCTACTCATCTACCTAACCTTGGTGGCAGAGTTACCCTATATGTAGATATACTGGTGGGAGGTAGTAGGTACACAGTGGAATAGTTGAGGTGCATGTAGTTATCCCCGACATCACTGTTATAAATAAGAAGAAGACTTTAAAGAGCCAAAAAGGTAGAATATATTTCAATCCTGTTCCTATTTCTTTAAGGGACGGGGTAAGTATGTTTGGGGTACTTTATCCATAAAAAGTGGTACAAGTGGATGTATTTTGATTCTACCAACAATGGGAGGAGTAATATCTATTCAAATTTGCATTCTATTTCTACTTTGCAAGTTTATCATAACCTAGAAGTACCTAGAAACTGACACACGTATATGTAGGCTTTGGATGAGTCTTCTGTTTTTTCCTGGAAATATGTGTCTTACTTGACATCTTCCCAAAAGATCATAAGGTCGACCAGTGTGATGATTAAATTCATTTCCATACATACCATCTATTTAAGATATGTCTGCACTTGTTCTAATTTGTGCAATTTCAGTAAGAAATTTGTAGAAATGTAGAGACCAGTAATTATTGCAATTAACTACATCAAGAAAACACTTTTCTGTCAGTGGAATCGTTGACAATTATACTTCAATTTTGTGCTCAACAGAATTTAGATGAAGCACACAGCAGCCCTGGATTGCATGCTGCAGCTGGACCTGGACTTGCAGAGGAATGTGCTACACTCGTAGGTTCCTCAATGTTTCATATGTTTTCCAGATTTTTCAAAACTTAATTCCTGAATGGATTCACAAATAGGGTCAGAAGCATAATTTGTGGCAACCAATCAACCTCAAACAGTTCCCTTACATTTTTATGGGAGCAGTTTCTTTAGATTTATTTCTTGCACTTTCTGTTTGTTCCAGCTTAAAAATGCTATTTAACTTCTTTTTCAACTGTTGGCCCTTGTATTCAACTTATGATGGTTACACTAGAAAGATTTATGTACAATTTACATTGTTTCATAGGGAGGATGCCGGACAGGAATGGCAAAAGTTACCAATGCTTATGATCTCCCTGCTAGGTGGGTGATTTTTATAAACTTTGTGCATTATTGTTGAGTATGTTAGTAACTGACTTCTTTTTAAGTTGATCTGCAATACCTTATCTTTACATATGCAATAATGATCACTAGTAAATCTTTAACTAGTCGAAGTCAGCTATGTGAACACCCTACATCTATTCTACTCCATCAAGGCATAGTTCATTCAGTACTCAATTATTTGTACTATAGGACAAATCATGGATTCTTAAAAATTAGGGATTTTCTCAATCTCACATCTGTCCATGCATCGTCATACGATCGGAACCAAACTCAAACGATTTCTGCAAAAAATCGGGCTCAGTGTAAAAGCACCACCAACAACTAACTTTAACTGCAACTGGTTGGTGGTGCCTATATGGATGCTTTGCTTTCATTGTGTGTTCTATTATTCGCTAAATCTGCAAGAATTCAAAGAAATTCTATTTCTTTTGAGACAACTTCCCTTCATGTGATTTTTTGGTCCCTCTTGGTACCTTCTGTGATCATGGTAACGTCCTTATACAAAAGAAGAACTCACCTATGAACCGGCGTATTTGGAGCTCTCCTTAAAAAATTTAGCTGTTTCCATCAATGCCCACTTTTCGAGTATGTTCACATAGTGAAGGAAATAGGGGTGGAATCTGTGAACAGCTAAGCTGGTCTTCAATGGGAAAAAAAGAGCATATGTATATTGAAGTATCAGCTGCAAACCACTCAGGGATATCCATGACCTGTCTACTTCACCAAAACCTCACAATACATGGTGTTTGAGTTGGTTATGAAATTGCTATATGAAAGCCAGGCTGCAATTGTATCTGGCAAAAAAGATAAGTTGTTTCATGATCATGAACAATGTGATTGTACTTGTGTTGGATTATCTAAATAATGATCCGATAATGTGAGAGTCTAAAGAAAATATTCGATCTTATTCTTTGACATCATGGTTGGGAGGAAGTACGGCATATCTCAATTCATGCCACTAACCTAACTATATTGTTTTCTCCAGAGCTACTGATGAAAACTGAAGTCATCAAGCTCCTATATCTTACTTTTTACACTCTAATAAGAAAATCGTCATGCCGCTTAACATTTTTTTATTTGAATGGTGATGGCTGGGTGTTGACTGTTGAACAGTAGTAGTAGTATAAATGCATTCCTGTATCACCCTATTTTTTTCATAGTAAAGTAAAATTAATTAAAATAAAAAAATAAGTAAATTACCGTTGATCAAGGTATGAAAAAAGAAAAAGAAATATTCAATGTTCTCTTGCCGTTTGAACTTAGTTCATGATTTTCATCACAATTTTTGCATGGAACAAATGCAGCATAATCATAAGCCTTTGACGTACTGCTGATTGAGTTTCGTGTGCAGGAGGGTCATTCACACTGTTGGTCCGAAGTATGCGGTAAAATACCACACTGCTGCCGAGAACGCTCTAAGTCATTGCTATCGCTCTTGCCTTGAACTTCTTATAGAAAATGGATTACAGAGGTTATCTAATGTTCATATGTTCTGTGGGTTGTTATTAATGCCGTGATTTTGATTAATAAAAGGAAAAAGGGAGAGCCACTCCCTTGGTTTCCTTTTTATTTTAGAGGTTTCAAATATTTAAAACGCTACTTACTATGCTGGTTTATGTAGTGCAGCATTGCGATGGGCTGTATCTATACCGAAGCCAAAAATTACCCGCGAGAACCTGCTGCTCATGTTGCAATAAGTAATATATCTCTCTGTTTTCTTAATAAATTGCTTATCTGTTCGTTATTTGATTTTCAAATAAAGATAAAGATAATTCTTTCTGTGCTGAGACTGGAAAGAACTGATATCTCCTTCAGAAAGATCCCCTCATATTAAATATATTTGCTTAAATGTTTTATCTGCCAGTTGTTGAATGTAACTCCATCTTTTATTGTTTTGATTAGGAACTGTACGGCGGTTTCTTGAGAAACAGAAAGATAAAATAGAGGCAGTCGTTTTCTGTACAACTACATCATCCGATACGGAGATATATAAAAGGTATACTTGGTACATTGTTTTCTACTATATACTTGAGAGGGTGCAAGCATTGTGTATATTGTTTTGGCTGTTAAAATTTACAGTATCTTTGATTTTGCAGATTGCTTCCTCTTTACTTCCCCCGGGATAATCA</genome_strand>
        <mrna_strand>ATCCTTTGTCATCTGCTTCAAGGTCTGAGGGCAATGCTAATGGTATTGTTTCCAAGTTTCCTGTGGATCATGAGATTAACTCCAAGATATACCTGTGGAGAGGAGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACAAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAGATGAAGCACACAGCAGCCCTGGATTGCATGCTGCAGCTGGACCTGGACTTGCAGAGGAATGTGCTACACTC........................................................................................................................................................................................................................................................................................GGAGGATGCCGGACAGGAATGGCAAAAGTTACCAATGCTTATGATCTCCCTGCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTCATTCACACTGTTGGTCCGAAGTATGCGGTAAAATACCACACTGCTGCCGAGAACGCTCTAAGTCATTGCTATCGCTCTTGCCTTGAACTTCTTATAGAAAATGGATTACAGAG...........................................................................................................................................................CATTGCGATGGGCTGTATCTATACCGAAGCCAAAAATTACCCGCGAGAACCTGCTGCTCATGTTGCAATAA.............................................................................................................................................................................................................GAACTGTACGGCGGTTTCTTGAGAAACAGAAAGATAAAATAGAGGCAGTCGTTTTCTGTACAACTACATCATCCGATACGGAGATATATAAAAG....................................................................................................ATTGCTTCCTCTTTACTTCCCCCGGGATAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324979" ref_strand="+" ref_description="SGN-E324979 [cTOC-11-F10]">
      <seq>aagtttcctgtggatcatgagattaactccaagatatacctgtggagaggagacccctggaatctcgaggtagatgctgttgttaactctacaaatgagaatttagatgaagcacacagcagccctggattgcatgctgcagctggacctggacttgcagaggaatgtgctacactcggaggatgccggacaggaatggcaaaagttaccaatgcttatgatctccctgctaggagggtcattcacactgttggtccgaagtatgcggtaaaataccacactgctgccgagaacgctctaagtcattgctatcgctcttgccttgaacttcttatagaaaatggattacagagcattgcgatgggctgtatctataccgaagccaaaaattacccgcgagaacctgctgctcatgttgcaataagaactgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="75888" stop="79786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76188" g_stop="76286" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76287" i_stop="77346" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77347" g_stop="77424" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="177" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77425" i_stop="77704" i_length="280">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77705" g_stop="77760" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="233" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77761" i_stop="79132" i_length="1372">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79133" g_stop="79252" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="353" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79253" i_stop="79407" i_length="155">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79408" g_stop="79478" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="424" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79479" i_stop="79683" i_length="205">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79684" g_stop="79691" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="432" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E324979" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76188" e_stop="76286"/>
          <exon e_start="77347" e_stop="77424"/>
          <exon e_start="77705" e_stop="77760"/>
          <exon e_start="79133" e_stop="79252"/>
          <exon e_start="79408" e_stop="79478"/>
          <exon e_start="79684" e_stop="79691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTCCTGTGGATCATGAGATTAACTCCAAGATATACCTGTGGAGAGGAGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACAAATGAGGTGAGAAGTAACTTCTAGATAATTGTATGTTGTGATCTTTGTATTTATTTTGATTAGGTTTCTTGACATACGTAGTATTTGCTTCTTCTGTGGATTAACATTGCATTGTTTGTTTTTAAATTTGGAGAGTAAGGGATCAAATAGTATGTGTGTTTTTAAATTTGGAGAGTAAGGGATTAAATAGTATGTGTGCTTGCATCCGTTCTCTGAGGTTGTGACAGAAACATGAACTTGCACCAACAGACTAGCTAAAGAATTTGGGTTTTCATTGAAATATTGAGTTCCAAGTAGGGTACTTTTGTGTCTGATTTGAGTAAATACAGTAGGGAGTAGGGGATACTTAGAGTTATATGCTTTTTCATGAGCTAGTTATCATGGTCAATAAGTGGGTTCAGTACTCAAATACAAAAAACCCTGGATGATCTCCTACTCATCTACCTAACCTTGGTGGCAGAGTTACCCTATATGTAGATATACTGGTGGGAGGTAGTAGGTACACAGTGGAATAGTTGAGGTGCATGTAGTTATCCCCGACATCACTGTTATAAATAAGAAGAAGACTTTAAAGAGCCAAAAAGGTAGAATATATTTCAATCCTGTTCCTATTTCTTTAAGGGACGGGGTAAGTATGTTTGGGGTACTTTATCCATAAAAAGTGGTACAAGTGGATGTATTTTGATTCTACCAACAATGGGAGGAGTAATATCTATTCAAATTTGCATTCTATTTCTACTTTGCAAGTTTATCATAACCTAGAAGTACCTAGAAACTGACACACGTATATGTAGGCTTTGGATGAGTCTTCTGTTTTTTCCTGGAAATATGTGTCTTACTTGACATCTTCCCAAAAGATCATAAGGTCGACCAGTGTGATGATTAAATTCATTTCCATACATACCATCTATTTAAGATATGTCTGCACTTGTTCTAATTTGTGCAATTTCAGTAAGAAATTTGTAGAAATGTAGAGACCAGTAATTATTGCAATTAACTACATCAAGAAAACACTTTTCTGTCAGTGGAATCGTTGACAATTATACTTCAATTTTGTGCTCAACAGAATTTAGATGAAGCACACAGCAGCCCTGGATTGCATGCTGCAGCTGGACCTGGACTTGCAGAGGAATGTGCTACACTCGTAGGTTCCTCAATGTTTCATATGTTTTCCAGATTTTTCAAAACTTAATTCCTGAATGGATTCACAAATAGGGTCAGAAGCATAATTTGTGGCAACCAATCAACCTCAAACAGTTCCCTTACATTTTTATGGGAGCAGTTTCTTTAGATTTATTTCTTGCACTTTCTGTTTGTTCCAGCTTAAAAATGCTATTTAACTTCTTTTTCAACTGTTGGCCCTTGTATTCAACTTATGATGGTTACACTAGAAAGATTTATGTACAATTTACATTGTTTCATAGGGAGGATGCCGGACAGGAATGGCAAAAGTTACCAATGCTTATGATCTCCCTGCTAGGTGGGTGATTTTTATAAACTTTGTGCATTATTGTTGAGTATGTTAGTAACTGACTTCTTTTTAAGTTGATCTGCAATACCTTATCTTTACATATGCAATAATGATCACTAGTAAATCTTTAACTAGTCGAAGTCAGCTATGTGAACACCCTACATCTATTCTACTCCATCAAGGCATAGTTCATTCAGTACTCAATTATTTGTACTATAGGACAAATCATGGATTCTTAAAAATTAGGGATTTTCTCAATCTCACATCTGTCCATGCATCGTCATACGATCGGAACCAAACTCAAACGATTTCTGCAAAAAATCGGGCTCAGTGTAAAAGCACCACCAACAACTAACTTTAACTGCAACTGGTTGGTGGTGCCTATATGGATGCTTTGCTTTCATTGTGTGTTCTATTATTCGCTAAATCTGCAAGAATTCAAAGAAATTCTATTTCTTTTGAGACAACTTCCCTTCATGTGATTTTTTGGTCCCTCTTGGTACCTTCTGTGATCATGGTAACGTCCTTATACAAAAGAAGAACTCACCTATGAACCGGCGTATTTGGAGCTCTCCTTAAAAAATTTAGCTGTTTCCATCAATGCCCACTTTTCGAGTATGTTCACATAGTGAAGGAAATAGGGGTGGAATCTGTGAACAGCTAAGCTGGTCTTCAATGGGAAAAAAAGAGCATATGTATATTGAAGTATCAGCTGCAAACCACTCAGGGATATCCATGACCTGTCTACTTCACCAAAACCTCACAATACATGGTGTTTGAGTTGGTTATGAAATTGCTATATGAAAGCCAGGCTGCAATTGTATCTGGCAAAAAAGATAAGTTGTTTCATGATCATGAACAATGTGATTGTACTTGTGTTGGATTATCTAAATAATGATCCGATAATGTGAGAGTCTAAAGAAAATATTCGATCTTATTCTTTGACATCATGGTTGGGAGGAAGTACGGCATATCTCAATTCATGCCACTAACCTAACTATATTGTTTTCTCCAGAGCTACTGATGAAAACTGAAGTCATCAAGCTCCTATATCTTACTTTTTACACTCTAATAAGAAAATCGTCATGCCGCTTAACATTTTTTTATTTGAATGGTGATGGCTGGGTGTTGACTGTTGAACAGTAGTAGTAGTATAAATGCATTCCTGTATCACCCTATTTTTTTCATAGTAAAGTAAAATTAATTAAAATAAAAAAATAAGTAAATTACCGTTGATCAAGGTATGAAAAAAGAAAAAGAAATATTCAATGTTCTCTTGCCGTTTGAACTTAGTTCATGATTTTCATCACAATTTTTGCATGGAACAAATGCAGCATAATCATAAGCCTTTGACGTACTGCTGATTGAGTTTCGTGTGCAGGAGGGTCATTCACACTGTTGGTCCGAAGTATGCGGTAAAATACCACACTGCTGCCGAGAACGCTCTAAGTCATTGCTATCGCTCTTGCCTTGAACTTCTTATAGAAAATGGATTACAGAGGTTATCTAATGTTCATATGTTCTGTGGGTTGTTATTAATGCCGTGATTTTGATTAATAAAAGGAAAAAGGGAGAGCCACTCCCTTGGTTTCCTTTTTATTTTAGAGGTTTCAAATATTTAAAACGCTACTTACTATGCTGGTTTATGTAGTGCAGCATTGCGATGGGCTGTATCTATACCGAAGCCAAAAATTACCCGCGAGAACCTGCTGCTCATGTTGCAATAAGTAATATATCTCTCTGTTTTCTTAATAAATTGCTTATCTGTTCGTTATTTGATTTTCAAATAAAGATAAAGATAATTCTTTCTGTGCTGAGACTGGAAAGAACTGATATCTCCTTCAGAAAGATCCCCTCATATTAAATATATTTGCTTAAATGTTTTATCTGCCAGTTGTTGAATGTAACTCCATCTTTTATTGTTTTGATTAGGAACTGTA</genome_strand>
        <mrna_strand>AAGTTTCCTGTGGATCATGAGATTAACTCCAAGATATACCTGTGGAGAGGAGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACAAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAGATGAAGCACACAGCAGCCCTGGATTGCATGCTGCAGCTGGACCTGGACTTGCAGAGGAATGTGCTACACTC........................................................................................................................................................................................................................................................................................GGAGGATGCCGGACAGGAATGGCAAAAGTTACCAATGCTTATGATCTCCCTGCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTCATTCACACTGTTGGTCCGAAGTATGCGGTAAAATACCACACTGCTGCCGAGAACGCTCTAAGTCATTGCTATCGCTCTTGCCTTGAACTTCTTATAGAAAATGGATTACAGAG...........................................................................................................................................................CATTGCGATGGGCTGTATCTATACCGAAGCCAAAAATTACCCGCGAGAACCTGCTGCTCATGTTGCAATAA.............................................................................................................................................................................................................GAACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689206" ref_strand="+" ref_description="SGN-E689206 [t3_tus_80_J03]">
      <seq>ataggagacccctggaatctcgaggtagatgctgttgttaactctacaaatgagaatttatatgaagcacactgcatccctggattgcgtgctgcagctggacctggacttgcggaggaatgtgctacactcggaggatgccggacaggaatggcaaaagttaccaatgcttatgatctccctgctaggagggtcattcacactgttggtccgaagtatgcggtaaaataccacactgctgccgagaacgctctaagtcattgctatcgctcttgccttgaacttcttatagaatatggattacagagcattgcgatgggctgtatctataccgaagccaaaaattacccgcgagaacctgctgctcatgttgcaataagaactgtacggcggtttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="75933" stop="80004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76233" g_stop="76286" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76287" i_stop="77346" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77347" g_stop="77424" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="132" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77425" i_stop="77704" i_length="280">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77705" g_stop="77760" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="188" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77761" i_stop="79132" i_length="1372">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79133" g_stop="79252" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="308" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79253" i_stop="79407" i_length="155">
            <donor d_prob="0.812" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79408" g_stop="79478" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="379" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79479" i_stop="79683" i_length="205">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79684" g_stop="79704" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="400" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E689206" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76233" e_stop="76286"/>
          <exon e_start="77347" e_stop="77424"/>
          <exon e_start="77705" e_stop="77760"/>
          <exon e_start="79133" e_stop="79252"/>
          <exon e_start="79408" e_stop="79478"/>
          <exon e_start="79684" e_stop="79704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGAGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACAAATGAGGTGAGAAGTAACTTCTAGATAATTGTATGTTGTGATCTTTGTATTTATTTTGATTAGGTTTCTTGACATACGTAGTATTTGCTTCTTCTGTGGATTAACATTGCATTGTTTGTTTTTAAATTTGGAGAGTAAGGGATCAAATAGTATGTGTGTTTTTAAATTTGGAGAGTAAGGGATTAAATAGTATGTGTGCTTGCATCCGTTCTCTGAGGTTGTGACAGAAACATGAACTTGCACCAACAGACTAGCTAAAGAATTTGGGTTTTCATTGAAATATTGAGTTCCAAGTAGGGTACTTTTGTGTCTGATTTGAGTAAATACAGTAGGGAGTAGGGGATACTTAGAGTTATATGCTTTTTCATGAGCTAGTTATCATGGTCAATAAGTGGGTTCAGTACTCAAATACAAAAAACCCTGGATGATCTCCTACTCATCTACCTAACCTTGGTGGCAGAGTTACCCTATATGTAGATATACTGGTGGGAGGTAGTAGGTACACAGTGGAATAGTTGAGGTGCATGTAGTTATCCCCGACATCACTGTTATAAATAAGAAGAAGACTTTAAAGAGCCAAAAAGGTAGAATATATTTCAATCCTGTTCCTATTTCTTTAAGGGACGGGGTAAGTATGTTTGGGGTACTTTATCCATAAAAAGTGGTACAAGTGGATGTATTTTGATTCTACCAACAATGGGAGGAGTAATATCTATTCAAATTTGCATTCTATTTCTACTTTGCAAGTTTATCATAACCTAGAAGTACCTAGAAACTGACACACGTATATGTAGGCTTTGGATGAGTCTTCTGTTTTTTCCTGGAAATATGTGTCTTACTTGACATCTTCCCAAAAGATCATAAGGTCGACCAGTGTGATGATTAAATTCATTTCCATACATACCATCTATTTAAGATATGTCTGCACTTGTTCTAATTTGTGCAATTTCAGTAAGAAATTTGTAGAAATGTAGAGACCAGTAATTATTGCAATTAACTACATCAAGAAAACACTTTTCTGTCAGTGGAATCGTTGACAATTATACTTCAATTTTGTGCTCAACAGAATTTAGATGAAGCACACAGCAGCCCTGGATTGCATGCTGCAGCTGGACCTGGACTTGCAGAGGAATGTGCTACACTCGTAGGTTCCTCAATGTTTCATATGTTTTCCAGATTTTTCAAAACTTAATTCCTGAATGGATTCACAAATAGGGTCAGAAGCATAATTTGTGGCAACCAATCAACCTCAAACAGTTCCCTTACATTTTTATGGGAGCAGTTTCTTTAGATTTATTTCTTGCACTTTCTGTTTGTTCCAGCTTAAAAATGCTATTTAACTTCTTTTTCAACTGTTGGCCCTTGTATTCAACTTATGATGGTTACACTAGAAAGATTTATGTACAATTTACATTGTTTCATAGGGAGGATGCCGGACAGGAATGGCAAAAGTTACCAATGCTTATGATCTCCCTGCTAGGTGGGTGATTTTTATAAACTTTGTGCATTATTGTTGAGTATGTTAGTAACTGACTTCTTTTTAAGTTGATCTGCAATACCTTATCTTTACATATGCAATAATGATCACTAGTAAATCTTTAACTAGTCGAAGTCAGCTATGTGAACACCCTACATCTATTCTACTCCATCAAGGCATAGTTCATTCAGTACTCAATTATTTGTACTATAGGACAAATCATGGATTCTTAAAAATTAGGGATTTTCTCAATCTCACATCTGTCCATGCATCGTCATACGATCGGAACCAAACTCAAACGATTTCTGCAAAAAATCGGGCTCAGTGTAAAAGCACCACCAACAACTAACTTTAACTGCAACTGGTTGGTGGTGCCTATATGGATGCTTTGCTTTCATTGTGTGTTCTATTATTCGCTAAATCTGCAAGAATTCAAAGAAATTCTATTTCTTTTGAGACAACTTCCCTTCATGTGATTTTTTGGTCCCTCTTGGTACCTTCTGTGATCATGGTAACGTCCTTATACAAAAGAAGAACTCACCTATGAACCGGCGTATTTGGAGCTCTCCTTAAAAAATTTAGCTGTTTCCATCAATGCCCACTTTTCGAGTATGTTCACATAGTGAAGGAAATAGGGGTGGAATCTGTGAACAGCTAAGCTGGTCTTCAATGGGAAAAAAAGAGCATATGTATATTGAAGTATCAGCTGCAAACCACTCAGGGATATCCATGACCTGTCTACTTCACCAAAACCTCACAATACATGGTGTTTGAGTTGGTTATGAAATTGCTATATGAAAGCCAGGCTGCAATTGTATCTGGCAAAAAAGATAAGTTGTTTCATGATCATGAACAATGTGATTGTACTTGTGTTGGATTATCTAAATAATGATCCGATAATGTGAGAGTCTAAAGAAAATATTCGATCTTATTCTTTGACATCATGGTTGGGAGGAAGTACGGCATATCTCAATTCATGCCACTAACCTAACTATATTGTTTTCTCCAGAGCTACTGATGAAAACTGAAGTCATCAAGCTCCTATATCTTACTTTTTACACTCTAATAAGAAAATCGTCATGCCGCTTAACATTTTTTTATTTGAATGGTGATGGCTGGGTGTTGACTGTTGAACAGTAGTAGTAGTATAAATGCATTCCTGTATCACCCTATTTTTTTCATAGTAAAGTAAAATTAATTAAAATAAAAAAATAAGTAAATTACCGTTGATCAAGGTATGAAAAAAGAAAAAGAAATATTCAATGTTCTCTTGCCGTTTGAACTTAGTTCATGATTTTCATCACAATTTTTGCATGGAACAAATGCAGCATAATCATAAGCCTTTGACGTACTGCTGATTGAGTTTCGTGTGCAGGAGGGTCATTCACACTGTTGGTCCGAAGTATGCGGTAAAATACCACACTGCTGCCGAGAACGCTCTAAGTCATTGCTATCGCTCTTGCCTTGAACTTCTTATAGAAAATGGATTACAGAGGTTATCTAATGTTCATATGTTCTGTGGGTTGTTATTAATGCCGTGATTTTGATTAATAAAAGGAAAAAGGGAGAGCCACTCCCTTGGTTTCCTTTTTATTTTAGAGGTTTCAAATATTTAAAACGCTACTTACTATGCTGGTTTATGTAGTGCAGCATTGCGATGGGCTGTATCTATACCGAAGCCAAAAATTACCCGCGAGAACCTGCTGCTCATGTTGCAATAAGTAATATATCTCTCTGTTTTCTTAATAAATTGCTTATCTGTTCGTTATTTGATTTTCAAATAAAGATAAAGATAATTCTTTCTGTGCTGAGACTGGAAAGAACTGATATCTCCTTCAGAAAGATCCCCTCATATTAAATATATTTGCTTAAATGTTTTATCTGCCAGTTGTTGAATGTAACTCCATCTTTTATTGTTTTGATTAGGAACTGTACGGCGGTTTCTTG</genome_strand>
        <mrna_strand>ATAGGAGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACAAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTATATGAAGCACACTGCATCCCTGGATTGCGTGCTGCAGCTGGACCTGGACTTGCGGAGGAATGTGCTACACTC........................................................................................................................................................................................................................................................................................GGAGGATGCCGGACAGGAATGGCAAAAGTTACCAATGCTTATGATCTCCCTGCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTCATTCACACTGTTGGTCCGAAGTATGCGGTAAAATACCACACTGCTGCCGAGAACGCTCTAAGTCATTGCTATCGCTCTTGCCTTGAACTTCTTATAGAATATGGATTACAGAG...........................................................................................................................................................CATTGCGATGGGCTGTATCTATACCGAAGCCAAAAATTACCCGCGAGAACCTGCTGCTCATGTTGCAATAA.............................................................................................................................................................................................................GAACTGTACGGCGGTTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306316" ref_strand="+" ref_description="SGN-E306316 [cLEX-13-G2]">
      <seq>ttgttaactctacaaatgagaatttagatgaagcacacagcagccctggattgcatgctgcagctggacctggacttgcagaggaatgtgctacactcggaggatgccggacaggaatggcaaaagttaccaatgcttatgatctccctgctaggagggtcattcacactgttggtccgaagtatgcggtaaaataccacactgctgccgagaacgctctaagtcattgctatcgctcttgccttgaacttcttatagaaaatggattacagagcattgcgatgggctgtatctataccgaagccaaaaattacccgcgagaacctgctgctcatgttgcaataagaactgtacggcggtttcttgagaaacagaaagataaaatagaggcagtcgttttctgtacaactacatcatccgatacggagatatataaaagattgcttcctctttacttcccccgggataatcatgaggaagaaattgcccggttaaaacttcctgcagatgttggggatgagaatggagagacaactactgctgagcgtaaaataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="75967" stop="80294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76267" g_stop="76286" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76287" i_stop="77346" i_length="1060">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77347" g_stop="77424" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="98" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77425" i_stop="77704" i_length="280">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77705" g_stop="77760" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="154" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77761" i_stop="79132" i_length="1372">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79133" g_stop="79252" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="274" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79253" i_stop="79407" i_length="155">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79408" g_stop="79478" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="345" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79479" i_stop="79683" i_length="205">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79684" g_stop="79777" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="439" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79778" i_stop="79877" i_length="100">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79878" g_stop="79994" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="556" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E306316" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76267" e_stop="76286"/>
          <exon e_start="77347" e_stop="77424"/>
          <exon e_start="77705" e_stop="77760"/>
          <exon e_start="79133" e_stop="79252"/>
          <exon e_start="79408" e_stop="79478"/>
          <exon e_start="79684" e_stop="79777"/>
          <exon e_start="79878" e_stop="79994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTAACTCTACAAATGAGGTGAGAAGTAACTTCTAGATAATTGTATGTTGTGATCTTTGTATTTATTTTGATTAGGTTTCTTGACATACGTAGTATTTGCTTCTTCTGTGGATTAACATTGCATTGTTTGTTTTTAAATTTGGAGAGTAAGGGATCAAATAGTATGTGTGTTTTTAAATTTGGAGAGTAAGGGATTAAATAGTATGTGTGCTTGCATCCGTTCTCTGAGGTTGTGACAGAAACATGAACTTGCACCAACAGACTAGCTAAAGAATTTGGGTTTTCATTGAAATATTGAGTTCCAAGTAGGGTACTTTTGTGTCTGATTTGAGTAAATACAGTAGGGAGTAGGGGATACTTAGAGTTATATGCTTTTTCATGAGCTAGTTATCATGGTCAATAAGTGGGTTCAGTACTCAAATACAAAAAACCCTGGATGATCTCCTACTCATCTACCTAACCTTGGTGGCAGAGTTACCCTATATGTAGATATACTGGTGGGAGGTAGTAGGTACACAGTGGAATAGTTGAGGTGCATGTAGTTATCCCCGACATCACTGTTATAAATAAGAAGAAGACTTTAAAGAGCCAAAAAGGTAGAATATATTTCAATCCTGTTCCTATTTCTTTAAGGGACGGGGTAAGTATGTTTGGGGTACTTTATCCATAAAAAGTGGTACAAGTGGATGTATTTTGATTCTACCAACAATGGGAGGAGTAATATCTATTCAAATTTGCATTCTATTTCTACTTTGCAAGTTTATCATAACCTAGAAGTACCTAGAAACTGACACACGTATATGTAGGCTTTGGATGAGTCTTCTGTTTTTTCCTGGAAATATGTGTCTTACTTGACATCTTCCCAAAAGATCATAAGGTCGACCAGTGTGATGATTAAATTCATTTCCATACATACCATCTATTTAAGATATGTCTGCACTTGTTCTAATTTGTGCAATTTCAGTAAGAAATTTGTAGAAATGTAGAGACCAGTAATTATTGCAATTAACTACATCAAGAAAACACTTTTCTGTCAGTGGAATCGTTGACAATTATACTTCAATTTTGTGCTCAACAGAATTTAGATGAAGCACACAGCAGCCCTGGATTGCATGCTGCAGCTGGACCTGGACTTGCAGAGGAATGTGCTACACTCGTAGGTTCCTCAATGTTTCATATGTTTTCCAGATTTTTCAAAACTTAATTCCTGAATGGATTCACAAATAGGGTCAGAAGCATAATTTGTGGCAACCAATCAACCTCAAACAGTTCCCTTACATTTTTATGGGAGCAGTTTCTTTAGATTTATTTCTTGCACTTTCTGTTTGTTCCAGCTTAAAAATGCTATTTAACTTCTTTTTCAACTGTTGGCCCTTGTATTCAACTTATGATGGTTACACTAGAAAGATTTATGTACAATTTACATTGTTTCATAGGGAGGATGCCGGACAGGAATGGCAAAAGTTACCAATGCTTATGATCTCCCTGCTAGGTGGGTGATTTTTATAAACTTTGTGCATTATTGTTGAGTATGTTAGTAACTGACTTCTTTTTAAGTTGATCTGCAATACCTTATCTTTACATATGCAATAATGATCACTAGTAAATCTTTAACTAGTCGAAGTCAGCTATGTGAACACCCTACATCTATTCTACTCCATCAAGGCATAGTTCATTCAGTACTCAATTATTTGTACTATAGGACAAATCATGGATTCTTAAAAATTAGGGATTTTCTCAATCTCACATCTGTCCATGCATCGTCATACGATCGGAACCAAACTCAAACGATTTCTGCAAAAAATCGGGCTCAGTGTAAAAGCACCACCAACAACTAACTTTAACTGCAACTGGTTGGTGGTGCCTATATGGATGCTTTGCTTTCATTGTGTGTTCTATTATTCGCTAAATCTGCAAGAATTCAAAGAAATTCTATTTCTTTTGAGACAACTTCCCTTCATGTGATTTTTTGGTCCCTCTTGGTACCTTCTGTGATCATGGTAACGTCCTTATACAAAAGAAGAACTCACCTATGAACCGGCGTATTTGGAGCTCTCCTTAAAAAATTTAGCTGTTTCCATCAATGCCCACTTTTCGAGTATGTTCACATAGTGAAGGAAATAGGGGTGGAATCTGTGAACAGCTAAGCTGGTCTTCAATGGGAAAAAAAGAGCATATGTATATTGAAGTATCAGCTGCAAACCACTCAGGGATATCCATGACCTGTCTACTTCACCAAAACCTCACAATACATGGTGTTTGAGTTGGTTATGAAATTGCTATATGAAAGCCAGGCTGCAATTGTATCTGGCAAAAAAGATAAGTTGTTTCATGATCATGAACAATGTGATTGTACTTGTGTTGGATTATCTAAATAATGATCCGATAATGTGAGAGTCTAAAGAAAATATTCGATCTTATTCTTTGACATCATGGTTGGGAGGAAGTACGGCATATCTCAATTCATGCCACTAACCTAACTATATTGTTTTCTCCAGAGCTACTGATGAAAACTGAAGTCATCAAGCTCCTATATCTTACTTTTTACACTCTAATAAGAAAATCGTCATGCCGCTTAACATTTTTTTATTTGAATGGTGATGGCTGGGTGTTGACTGTTGAACAGTAGTAGTAGTATAAATGCATTCCTGTATCACCCTATTTTTTTCATAGTAAAGTAAAATTAATTAAAATAAAAAAATAAGTAAATTACCGTTGATCAAGGTATGAAAAAAGAAAAAGAAATATTCAATGTTCTCTTGCCGTTTGAACTTAGTTCATGATTTTCATCACAATTTTTGCATGGAACAAATGCAGCATAATCATAAGCCTTTGACGTACTGCTGATTGAGTTTCGTGTGCAGGAGGGTCATTCACACTGTTGGTCCGAAGTATGCGGTAAAATACCACACTGCTGCCGAGAACGCTCTAAGTCATTGCTATCGCTCTTGCCTTGAACTTCTTATAGAAAATGGATTACAGAGGTTATCTAATGTTCATATGTTCTGTGGGTTGTTATTAATGCCGTGATTTTGATTAATAAAAGGAAAAAGGGAGAGCCACTCCCTTGGTTTCCTTTTTATTTTAGAGGTTTCAAATATTTAAAACGCTACTTACTATGCTGGTTTATGTAGTGCAGCATTGCGATGGGCTGTATCTATACCGAAGCCAAAAATTACCCGCGAGAACCTGCTGCTCATGTTGCAATAAGTAATATATCTCTCTGTTTTCTTAATAAATTGCTTATCTGTTCGTTATTTGATTTTCAAATAAAGATAAAGATAATTCTTTCTGTGCTGAGACTGGAAAGAACTGATATCTCCTTCAGAAAGATCCCCTCATATTAAATATATTTGCTTAAATGTTTTATCTGCCAGTTGTTGAATGTAACTCCATCTTTTATTGTTTTGATTAGGAACTGTACGGCGGTTTCTTGAGAAACAGAAAGATAAAATAGAGGCAGTCGTTTTCTGTACAACTACATCATCCGATACGGAGATATATAAAAGGTATACTTGGTACATTGTTTTCTACTATATACTTGAGAGGGTGCAAGCATTGTGTATATTGTTTTGGCTGTTAAAATTTACAGTATCTTTGATTTTGCAGATTGCTTCCTCTTTACTTCCCCCGGGATAATCATGAGGAAGAAATTGCCCGGTTAAAACTTCCTGCAGATGTTGGGGATGAGAATGGAGAGACAACTACTGCTGAGCGTAAAATAAG</genome_strand>
        <mrna_strand>TTGTTAACTCTACAAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAGATGAAGCACACAGCAGCCCTGGATTGCATGCTGCAGCTGGACCTGGACTTGCAGAGGAATGTGCTACACTC........................................................................................................................................................................................................................................................................................GGAGGATGCCGGACAGGAATGGCAAAAGTTACCAATGCTTATGATCTCCCTGCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTCATTCACACTGTTGGTCCGAAGTATGCGGTAAAATACCACACTGCTGCCGAGAACGCTCTAAGTCATTGCTATCGCTCTTGCCTTGAACTTCTTATAGAAAATGGATTACAGAG...........................................................................................................................................................CATTGCGATGGGCTGTATCTATACCGAAGCCAAAAATTACCCGCGAGAACCTGCTGCTCATGTTGCAATAA.............................................................................................................................................................................................................GAACTGTACGGCGGTTTCTTGAGAAACAGAAAGATAAAATAGAGGCAGTCGTTTTCTGTACAACTACATCATCCGATACGGAGATATATAAAAG....................................................................................................ATTGCTTCCTCTTTACTTCCCCCGGGATAATCATGAGGAAGAAATTGCCCGGTTAAAACTTCCTGCAGATGTTGGGGATGAGAATGGAGAGACAACTACTGCTGAGCGTAAAATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276293" ref_strand="+" ref_description="SGN-E276293 [cLEN-21-M2]">
      <seq>atgccggacaggaatggcaaaagttaccaatgcttatgatctccctgctaggagggtcattcacactgttggtccgaagtatgcggtaaaataccacactgctgccgagaacgctctaagtcattgctatcgctcttgccttgaacttcttatagaaaatggattacagagcattgcgatgggctgtatctataccgaagccaaaaattacccgcgagaacctgctgctcatgttgcaataagaactgtacggcggtttcttgagaaacagaaagataaaatagaggcagtcgttttctgtacaactacatcatccgatacggagatatataaaagattgcttgctctatacttcccccgggataatcatgaggaagaaattgcccggttaaaacttcctgcagatgttggggatgagaatggagagacaactactgctgagcgtaaaataagaataaaaccattgccaaattcaaaagtttctagtccaaggaccccccaagcatctgttgatctatctgtcagtaatcttggtttgtacagaaggagttcatcctacttggatgcatgtctggatcctgcttttatgtccctgatcaaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="77410" stop="81500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77710" g_stop="77760" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77761" i_stop="79132" i_length="1372">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79133" g_stop="79252" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="171" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79253" i_stop="79407" i_length="155">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79408" g_stop="79478" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="242" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79479" i_stop="79683" i_length="205">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79684" g_stop="79777" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="336" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79778" i_stop="79877" i_length="100">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79878" g_stop="80087" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="546" r_length="210" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80088" i_stop="81142" i_length="1055">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81143" g_stop="81200" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="604" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E276293" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77710" e_stop="77760"/>
          <exon e_start="79133" e_stop="79252"/>
          <exon e_start="79408" e_stop="79478"/>
          <exon e_start="79684" e_stop="79777"/>
          <exon e_start="79878" e_stop="80087"/>
          <exon e_start="81143" e_stop="81200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCGGACAGGAATGGCAAAAGTTACCAATGCTTATGATCTCCCTGCTAGGTGGGTGATTTTTATAAACTTTGTGCATTATTGTTGAGTATGTTAGTAACTGACTTCTTTTTAAGTTGATCTGCAATACCTTATCTTTACATATGCAATAATGATCACTAGTAAATCTTTAACTAGTCGAAGTCAGCTATGTGAACACCCTACATCTATTCTACTCCATCAAGGCATAGTTCATTCAGTACTCAATTATTTGTACTATAGGACAAATCATGGATTCTTAAAAATTAGGGATTTTCTCAATCTCACATCTGTCCATGCATCGTCATACGATCGGAACCAAACTCAAACGATTTCTGCAAAAAATCGGGCTCAGTGTAAAAGCACCACCAACAACTAACTTTAACTGCAACTGGTTGGTGGTGCCTATATGGATGCTTTGCTTTCATTGTGTGTTCTATTATTCGCTAAATCTGCAAGAATTCAAAGAAATTCTATTTCTTTTGAGACAACTTCCCTTCATGTGATTTTTTGGTCCCTCTTGGTACCTTCTGTGATCATGGTAACGTCCTTATACAAAAGAAGAACTCACCTATGAACCGGCGTATTTGGAGCTCTCCTTAAAAAATTTAGCTGTTTCCATCAATGCCCACTTTTCGAGTATGTTCACATAGTGAAGGAAATAGGGGTGGAATCTGTGAACAGCTAAGCTGGTCTTCAATGGGAAAAAAAGAGCATATGTATATTGAAGTATCAGCTGCAAACCACTCAGGGATATCCATGACCTGTCTACTTCACCAAAACCTCACAATACATGGTGTTTGAGTTGGTTATGAAATTGCTATATGAAAGCCAGGCTGCAATTGTATCTGGCAAAAAAGATAAGTTGTTTCATGATCATGAACAATGTGATTGTACTTGTGTTGGATTATCTAAATAATGATCCGATAATGTGAGAGTCTAAAGAAAATATTCGATCTTATTCTTTGACATCATGGTTGGGAGGAAGTACGGCATATCTCAATTCATGCCACTAACCTAACTATATTGTTTTCTCCAGAGCTACTGATGAAAACTGAAGTCATCAAGCTCCTATATCTTACTTTTTACACTCTAATAAGAAAATCGTCATGCCGCTTAACATTTTTTTATTTGAATGGTGATGGCTGGGTGTTGACTGTTGAACAGTAGTAGTAGTATAAATGCATTCCTGTATCACCCTATTTTTTTCATAGTAAAGTAAAATTAATTAAAATAAAAAAATAAGTAAATTACCGTTGATCAAGGTATGAAAAAAGAAAAAGAAATATTCAATGTTCTCTTGCCGTTTGAACTTAGTTCATGATTTTCATCACAATTTTTGCATGGAACAAATGCAGCATAATCATAAGCCTTTGACGTACTGCTGATTGAGTTTCGTGTGCAGGAGGGTCATTCACACTGTTGGTCCGAAGTATGCGGTAAAATACCACACTGCTGCCGAGAACGCTCTAAGTCATTGCTATCGCTCTTGCCTTGAACTTCTTATAGAAAATGGATTACAGAGGTTATCTAATGTTCATATGTTCTGTGGGTTGTTATTAATGCCGTGATTTTGATTAATAAAAGGAAAAAGGGAGAGCCACTCCCTTGGTTTCCTTTTTATTTTAGAGGTTTCAAATATTTAAAACGCTACTTACTATGCTGGTTTATGTAGTGCAGCATTGCGATGGGCTGTATCTATACCGAAGCCAAAAATTACCCGCGAGAACCTGCTGCTCATGTTGCAATAAGTAATATATCTCTCTGTTTTCTTAATAAATTGCTTATCTGTTCGTTATTTGATTTTCAAATAAAGATAAAGATAATTCTTTCTGTGCTGAGACTGGAAAGAACTGATATCTCCTTCAGAAAGATCCCCTCATATTAAATATATTTGCTTAAATGTTTTATCTGCCAGTTGTTGAATGTAACTCCATCTTTTATTGTTTTGATTAGGAACTGTACGGCGGTTTCTTGAGAAACAGAAAGATAAAATAGAGGCAGTCGTTTTCTGTACAACTACATCATCCGATACGGAGATATATAAAAGGTATACTTGGTACATTGTTTTCTACTATATACTTGAGAGGGTGCAAGCATTGTGTATATTGTTTTGGCTGTTAAAATTTACAGTATCTTTGATTTTGCAGATTGCTTCCTCTTTACTTCCCCCGGGATAATCATGAGGAAGAAATTGCCCGGTTAAAACTTCCTGCAGATGTTGGGGATGAGAATGGAGAGACAACTACTGCTGAGCGTAAAATAAGAATAAAACCATTGCCAAATTCAAAAGTTTCTAGTCCAAGGACCCCCCAAGCATCTGTTGATCTATCTGTCAGTAATCTTGGTTTGTCCAGAAGGTTAGTGATGAATTAAGCAGTTCATTCACAACAAATATCACGTGAACAGCAGGCTTGCAAGATACAGTTTGAAGTGTTAAAGTTTGTTACAACTTAAAAACTGGTTTCTTTGCTCATGTCTCCCCCGAATTTTTTAATCTATGTGTATTACGGTTGAATGAGACAAAGGAAATTATTGCTTACATAAAGAATAGCTCCTGGTATCCCTAAGCTTTTGGCTGTCGCTTTATAATATCACTACCTTTCGACTTTGAATGTCCTATTTGAAACAAACTAATTAGCTCAAGGTTTATGACTGGTCCTTTCAAAAGCGAAGATGCTAAAACAAATGTCATGTTTTTTTTGTGATTACAGTTAAGAGACTGGTGTAATATGTAAGAAGGGCCTTCTGAAGTGAAGTCTTATTTAGGTGTGATTAAACAAGTTTCAAGTTGAACATAGTGCTGCACTCTATGAGTTTTAATAGGATGAACTTCTCCACCATCATTTTGCTGGAAATTTAGCTTGCATTCCACTCGATTAAATCCTTTGATGGTGGAAGTTCTTCTCTCTCTTGGCCTTGATCAATAAATAAAGCATGATCCCCGAACAAAAAGATTACACCATATATCTTAATTGACTATCTTGAATTACATTTTCGTCCAGATGGCATCAGCTTCCATTATTAAGGACTTCGGAGATCACTCCGCATTCATGTGTTTCCAAGCCAGTATAAGAGTCAAACTAAAGCACTTTTTGTACTTGCAGCTCATCATTCTGTTTTCTCATTAATGAAAAACCATAATTCATTGTTCTTAACAATAGTCCTGGGATTTTTTGGTTTTTTGTTATTTCTGATCATATTGCTGCAGTGAATTTTTGGTTGTAAATTATAATCAAGAGTAAATAACATTAAGAAAGATACTTCCTGTTACTTTTACATTGTAATATTACTTCGATTAAAAATTCCATTATTGTTGTTTGTTATCTAGTTTCTACATGTTGAAATCATATTTGTGTGGCATATGACTTGATTATATATCGTTAAACCAGACTGAGAAAATTTTCTTAAACAGGAGTTCATCCTACTTGGATGCATTTCTGGATCCTGCTTTTATGTCCCTGATCAAAGAC</genome_strand>
        <mrna_strand>ATGCCGGACAGGAATGGCAAAAGTTACCAATGCTTATGATCTCCCTGCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTCATTCACACTGTTGGTCCGAAGTATGCGGTAAAATACCACACTGCTGCCGAGAACGCTCTAAGTCATTGCTATCGCTCTTGCCTTGAACTTCTTATAGAAAATGGATTACAGAG...........................................................................................................................................................CATTGCGATGGGCTGTATCTATACCGAAGCCAAAAATTACCCGCGAGAACCTGCTGCTCATGTTGCAATAA.............................................................................................................................................................................................................GAACTGTACGGCGGTTTCTTGAGAAACAGAAAGATAAAATAGAGGCAGTCGTTTTCTGTACAACTACATCATCCGATACGGAGATATATAAAAG....................................................................................................ATTGCTTGCTCTATACTTCCCCCGGGATAATCATGAGGAAGAAATTGCCCGGTTAAAACTTCCTGCAGATGTTGGGGATGAGAATGGAGAGACAACTACTGCTGAGCGTAAAATAAGAATAAAACCATTGCCAAATTCAAAAGTTTCTAGTCCAAGGACCCCCCAAGCATCTGTTGATCTATCTGTCAGTAATCTTGGTTTGTACAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCATCCTACTTGGATGCATGTCTGGATCCTGCTTTTATGTCCCTGATCAAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256503" ref_strand="+" ref_description="SGN-E256503 [cLEG-38-J14]">
      <seq>gttaccaatgcttatgatctccctgctaggagggtcattcacactgttggtccgaagtatgcggtaaaataccacactgctgccgagaacgctctaagtcattgctatcgctcttgccttgaacttcttatagaaaatggattacagagcattgcgatgggctgtatctataccgaagccaaaaattacccgcgagaacctgctgctcatgttgcaataagaactgtacggcggtttcttgagaaacagaaagataaaatagaggcagtcgttttctgtacaactacatcatccgatacggagatatataaaagattgcttcctctttacttcccccgggataatcatgaggaagaaattgcccggttaaaacttcctgcagatgttggggatgagaatggagagacaactactgctgagcgtaaaataagaataaaaccattgccaaattcaaaagtttctagtccaaagaccccccaagcatctgttgatctatctgtcagtaatcttggtttgtccagaaagagttcatcctacttggatgcatttctggatcctgcttttatgtccctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="77432" stop="81493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77732" g_stop="77760" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77761" i_stop="79132" i_length="1372">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79133" g_stop="79252" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="149" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79253" i_stop="79407" i_length="155">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79408" g_stop="79478" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="220" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79479" i_stop="79683" i_length="205">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79684" g_stop="79777" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="314" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79778" i_stop="79877" i_length="100">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79878" g_stop="80087" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="524" r_length="210" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80088" i_stop="81142" i_length="1055">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81143" g_stop="81193" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="575" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E256503" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77732" e_stop="77760"/>
          <exon e_start="79133" e_stop="79252"/>
          <exon e_start="79408" e_stop="79478"/>
          <exon e_start="79684" e_stop="79777"/>
          <exon e_start="79878" e_stop="80087"/>
          <exon e_start="81143" e_stop="81193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACCAATGCTTATGATCTCCCTGCTAGGTGGGTGATTTTTATAAACTTTGTGCATTATTGTTGAGTATGTTAGTAACTGACTTCTTTTTAAGTTGATCTGCAATACCTTATCTTTACATATGCAATAATGATCACTAGTAAATCTTTAACTAGTCGAAGTCAGCTATGTGAACACCCTACATCTATTCTACTCCATCAAGGCATAGTTCATTCAGTACTCAATTATTTGTACTATAGGACAAATCATGGATTCTTAAAAATTAGGGATTTTCTCAATCTCACATCTGTCCATGCATCGTCATACGATCGGAACCAAACTCAAACGATTTCTGCAAAAAATCGGGCTCAGTGTAAAAGCACCACCAACAACTAACTTTAACTGCAACTGGTTGGTGGTGCCTATATGGATGCTTTGCTTTCATTGTGTGTTCTATTATTCGCTAAATCTGCAAGAATTCAAAGAAATTCTATTTCTTTTGAGACAACTTCCCTTCATGTGATTTTTTGGTCCCTCTTGGTACCTTCTGTGATCATGGTAACGTCCTTATACAAAAGAAGAACTCACCTATGAACCGGCGTATTTGGAGCTCTCCTTAAAAAATTTAGCTGTTTCCATCAATGCCCACTTTTCGAGTATGTTCACATAGTGAAGGAAATAGGGGTGGAATCTGTGAACAGCTAAGCTGGTCTTCAATGGGAAAAAAAGAGCATATGTATATTGAAGTATCAGCTGCAAACCACTCAGGGATATCCATGACCTGTCTACTTCACCAAAACCTCACAATACATGGTGTTTGAGTTGGTTATGAAATTGCTATATGAAAGCCAGGCTGCAATTGTATCTGGCAAAAAAGATAAGTTGTTTCATGATCATGAACAATGTGATTGTACTTGTGTTGGATTATCTAAATAATGATCCGATAATGTGAGAGTCTAAAGAAAATATTCGATCTTATTCTTTGACATCATGGTTGGGAGGAAGTACGGCATATCTCAATTCATGCCACTAACCTAACTATATTGTTTTCTCCAGAGCTACTGATGAAAACTGAAGTCATCAAGCTCCTATATCTTACTTTTTACACTCTAATAAGAAAATCGTCATGCCGCTTAACATTTTTTTATTTGAATGGTGATGGCTGGGTGTTGACTGTTGAACAGTAGTAGTAGTATAAATGCATTCCTGTATCACCCTATTTTTTTCATAGTAAAGTAAAATTAATTAAAATAAAAAAATAAGTAAATTACCGTTGATCAAGGTATGAAAAAAGAAAAAGAAATATTCAATGTTCTCTTGCCGTTTGAACTTAGTTCATGATTTTCATCACAATTTTTGCATGGAACAAATGCAGCATAATCATAAGCCTTTGACGTACTGCTGATTGAGTTTCGTGTGCAGGAGGGTCATTCACACTGTTGGTCCGAAGTATGCGGTAAAATACCACACTGCTGCCGAGAACGCTCTAAGTCATTGCTATCGCTCTTGCCTTGAACTTCTTATAGAAAATGGATTACAGAGGTTATCTAATGTTCATATGTTCTGTGGGTTGTTATTAATGCCGTGATTTTGATTAATAAAAGGAAAAAGGGAGAGCCACTCCCTTGGTTTCCTTTTTATTTTAGAGGTTTCAAATATTTAAAACGCTACTTACTATGCTGGTTTATGTAGTGCAGCATTGCGATGGGCTGTATCTATACCGAAGCCAAAAATTACCCGCGAGAACCTGCTGCTCATGTTGCAATAAGTAATATATCTCTCTGTTTTCTTAATAAATTGCTTATCTGTTCGTTATTTGATTTTCAAATAAAGATAAAGATAATTCTTTCTGTGCTGAGACTGGAAAGAACTGATATCTCCTTCAGAAAGATCCCCTCATATTAAATATATTTGCTTAAATGTTTTATCTGCCAGTTGTTGAATGTAACTCCATCTTTTATTGTTTTGATTAGGAACTGTACGGCGGTTTCTTGAGAAACAGAAAGATAAAATAGAGGCAGTCGTTTTCTGTACAACTACATCATCCGATACGGAGATATATAAAAGGTATACTTGGTACATTGTTTTCTACTATATACTTGAGAGGGTGCAAGCATTGTGTATATTGTTTTGGCTGTTAAAATTTACAGTATCTTTGATTTTGCAGATTGCTTCCTCTTTACTTCCCCCGGGATAATCATGAGGAAGAAATTGCCCGGTTAAAACTTCCTGCAGATGTTGGGGATGAGAATGGAGAGACAACTACTGCTGAGCGTAAAATAAGAATAAAACCATTGCCAAATTCAAAAGTTTCTAGTCCAAGGACCCCCCAAGCATCTGTTGATCTATCTGTCAGTAATCTTGGTTTGTCCAGAAGGTTAGTGATGAATTAAGCAGTTCATTCACAACAAATATCACGTGAACAGCAGGCTTGCAAGATACAGTTTGAAGTGTTAAAGTTTGTTACAACTTAAAAACTGGTTTCTTTGCTCATGTCTCCCCCGAATTTTTTAATCTATGTGTATTACGGTTGAATGAGACAAAGGAAATTATTGCTTACATAAAGAATAGCTCCTGGTATCCCTAAGCTTTTGGCTGTCGCTTTATAATATCACTACCTTTCGACTTTGAATGTCCTATTTGAAACAAACTAATTAGCTCAAGGTTTATGACTGGTCCTTTCAAAAGCGAAGATGCTAAAACAAATGTCATGTTTTTTTTGTGATTACAGTTAAGAGACTGGTGTAATATGTAAGAAGGGCCTTCTGAAGTGAAGTCTTATTTAGGTGTGATTAAACAAGTTTCAAGTTGAACATAGTGCTGCACTCTATGAGTTTTAATAGGATGAACTTCTCCACCATCATTTTGCTGGAAATTTAGCTTGCATTCCACTCGATTAAATCCTTTGATGGTGGAAGTTCTTCTCTCTCTTGGCCTTGATCAATAAATAAAGCATGATCCCCGAACAAAAAGATTACACCATATATCTTAATTGACTATCTTGAATTACATTTTCGTCCAGATGGCATCAGCTTCCATTATTAAGGACTTCGGAGATCACTCCGCATTCATGTGTTTCCAAGCCAGTATAAGAGTCAAACTAAAGCACTTTTTGTACTTGCAGCTCATCATTCTGTTTTCTCATTAATGAAAAACCATAATTCATTGTTCTTAACAATAGTCCTGGGATTTTTTGGTTTTTTGTTATTTCTGATCATATTGCTGCAGTGAATTTTTGGTTGTAAATTATAATCAAGAGTAAATAACATTAAGAAAGATACTTCCTGTTACTTTTACATTGTAATATTACTTCGATTAAAAATTCCATTATTGTTGTTTGTTATCTAGTTTCTACATGTTGAAATCATATTTGTGTGGCATATGACTTGATTATATATCGTTAAACCAGACTGAGAAAATTTTCTTAAACAGGAGTTCATCCTACTTGGATGCATTTCTGGATCCTGCTTTTATGTCCCTGAT</genome_strand>
        <mrna_strand>GTTACCAATGCTTATGATCTCCCTGCTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTCATTCACACTGTTGGTCCGAAGTATGCGGTAAAATACCACACTGCTGCCGAGAACGCTCTAAGTCATTGCTATCGCTCTTGCCTTGAACTTCTTATAGAAAATGGATTACAGAG...........................................................................................................................................................CATTGCGATGGGCTGTATCTATACCGAAGCCAAAAATTACCCGCGAGAACCTGCTGCTCATGTTGCAATAA.............................................................................................................................................................................................................GAACTGTACGGCGGTTTCTTGAGAAACAGAAAGATAAAATAGAGGCAGTCGTTTTCTGTACAACTACATCATCCGATACGGAGATATATAAAAG....................................................................................................ATTGCTTCCTCTTTACTTCCCCCGGGATAATCATGAGGAAGAAATTGCCCGGTTAAAACTTCCTGCAGATGTTGGGGATGAGAATGGAGAGACAACTACTGCTGAGCGTAAAATAAGAATAAAACCATTGCCAAATTCAAAAGTTTCTAGTCCAAAGACCCCCCAAGCATCTGTTGATCTATCTGTCAGTAATCTTGGTTTGTCCAGAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCATCCTACTTGGATGCATTTCTGGATCCTGCTTTTATGTCCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214740" ref_strand="+" ref_description="SGN-E214740 [cLEC-79-L14]">
      <seq>cacactgctgccgagaacgctctaagtcattgctatcgctcttgccttgaacttcttatagaaaatggattacagagcattgcgatgggctgtatctataccgaagccaaaaattacccgcgagaacctgctgctcatgttgcaataagaactgtacggcggtttcttgagaaacagaaagataaaatagaggcagtcgttttctgtacaactacatcatccgatacggagatatataaaagattgcttcctctttacttcccccgggataatcatgaggaagaaattgcccggttaaaacttcctgcagatgttggggatgagaatggagagacaactactgctgagcgtaaaataagaataaaaccattgccaaattcaaaagtttctagtccaaggaccccccaagcatctgttgatctatctgtcagtaatcttggtttgtccagaaggagttcatcctacttggatgcatttctggatcctgcttttatgtccctgatcaaagacccagatcagcgacgtaaagaacaatgggaaaaaacagcccaagcgcaaaataattggaactgcttcaaaatgcttggatatggtggacttgggggacctgctttatcagctgcagaagatatacccttcattctagatatcttgcaaaagcgaattctatgaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="78876" stop="81668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79176" g_stop="79252" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79253" i_stop="79407" i_length="155">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79408" g_stop="79478" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="148" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79479" i_stop="79683" i_length="205">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79684" g_stop="79777" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="242" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79778" i_stop="79877" i_length="100">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79878" g_stop="80087" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="452" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80088" i_stop="81142" i_length="1055">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81143" g_stop="81368" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="677" r_length="225" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E214740" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79176" e_stop="79252"/>
          <exon e_start="79408" e_stop="79478"/>
          <exon e_start="79684" e_stop="79777"/>
          <exon e_start="79878" e_stop="80087"/>
          <exon e_start="81143" e_stop="81368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTGCTGCCGAGAACGCTCTAAGTCATTGCTATCGCTCTTGCCTTGAACTTCTTATAGAAAATGGATTACAGAGGTTATCTAATGTTCATATGTTCTGTGGGTTGTTATTAATGCCGTGATTTTGATTAATAAAAGGAAAAAGGGAGAGCCACTCCCTTGGTTTCCTTTTTATTTTAGAGGTTTCAAATATTTAAAACGCTACTTACTATGCTGGTTTATGTAGTGCAGCATTGCGATGGGCTGTATCTATACCGAAGCCAAAAATTACCCGCGAGAACCTGCTGCTCATGTTGCAATAAGTAATATATCTCTCTGTTTTCTTAATAAATTGCTTATCTGTTCGTTATTTGATTTTCAAATAAAGATAAAGATAATTCTTTCTGTGCTGAGACTGGAAAGAACTGATATCTCCTTCAGAAAGATCCCCTCATATTAAATATATTTGCTTAAATGTTTTATCTGCCAGTTGTTGAATGTAACTCCATCTTTTATTGTTTTGATTAGGAACTGTACGGCGGTTTCTTGAGAAACAGAAAGATAAAATAGAGGCAGTCGTTTTCTGTACAACTACATCATCCGATACGGAGATATATAAAAGGTATACTTGGTACATTGTTTTCTACTATATACTTGAGAGGGTGCAAGCATTGTGTATATTGTTTTGGCTGTTAAAATTTACAGTATCTTTGATTTTGCAGATTGCTTCCTCTTTACTTCCCCCGGGATAATCATGAGGAAGAAATTGCCCGGTTAAAACTTCCTGCAGATGTTGGGGATGAGAATGGAGAGACAACTACTGCTGAGCGTAAAATAAGAATAAAACCATTGCCAAATTCAAAAGTTTCTAGTCCAAGGACCCCCCAAGCATCTGTTGATCTATCTGTCAGTAATCTTGGTTTGTCCAGAAGGTTAGTGATGAATTAAGCAGTTCATTCACAACAAATATCACGTGAACAGCAGGCTTGCAAGATACAGTTTGAAGTGTTAAAGTTTGTTACAACTTAAAAACTGGTTTCTTTGCTCATGTCTCCCCCGAATTTTTTAATCTATGTGTATTACGGTTGAATGAGACAAAGGAAATTATTGCTTACATAAAGAATAGCTCCTGGTATCCCTAAGCTTTTGGCTGTCGCTTTATAATATCACTACCTTTCGACTTTGAATGTCCTATTTGAAACAAACTAATTAGCTCAAGGTTTATGACTGGTCCTTTCAAAAGCGAAGATGCTAAAACAAATGTCATGTTTTTTTTGTGATTACAGTTAAGAGACTGGTGTAATATGTAAGAAGGGCCTTCTGAAGTGAAGTCTTATTTAGGTGTGATTAAACAAGTTTCAAGTTGAACATAGTGCTGCACTCTATGAGTTTTAATAGGATGAACTTCTCCACCATCATTTTGCTGGAAATTTAGCTTGCATTCCACTCGATTAAATCCTTTGATGGTGGAAGTTCTTCTCTCTCTTGGCCTTGATCAATAAATAAAGCATGATCCCCGAACAAAAAGATTACACCATATATCTTAATTGACTATCTTGAATTACATTTTCGTCCAGATGGCATCAGCTTCCATTATTAAGGACTTCGGAGATCACTCCGCATTCATGTGTTTCCAAGCCAGTATAAGAGTCAAACTAAAGCACTTTTTGTACTTGCAGCTCATCATTCTGTTTTCTCATTAATGAAAAACCATAATTCATTGTTCTTAACAATAGTCCTGGGATTTTTTGGTTTTTTGTTATTTCTGATCATATTGCTGCAGTGAATTTTTGGTTGTAAATTATAATCAAGAGTAAATAACATTAAGAAAGATACTTCCTGTTACTTTTACATTGTAATATTACTTCGATTAAAAATTCCATTATTGTTGTTTGTTATCTAGTTTCTACATGTTGAAATCATATTTGTGTGGCATATGACTTGATTATATATCGTTAAACCAGACTGAGAAAATTTTCTTAAACAGGAGTTCATCCTACTTGGATGCATTTCTGGATCCTGCTTTTATGTCCCTGATCAAAGACCCAGATCAGCGACGTAAAGAACAATGGGAAAAAACAGCCCAAGCGCAAAATAATTGGAACTGCTTCAAAATGCTTGGATATGGTGACCTTGGGGGACCTGCTTTATCAGCTGCAGAAGAATATACCCTTCATTCTAGATATCTTGCAAAAGCGAATTCTATGAATCTT</genome_strand>
        <mrna_strand>CACACTGCTGCCGAGAACGCTCTAAGTCATTGCTATCGCTCTTGCCTTGAACTTCTTATAGAAAATGGATTACAGAG...........................................................................................................................................................CATTGCGATGGGCTGTATCTATACCGAAGCCAAAAATTACCCGCGAGAACCTGCTGCTCATGTTGCAATAA.............................................................................................................................................................................................................GAACTGTACGGCGGTTTCTTGAGAAACAGAAAGATAAAATAGAGGCAGTCGTTTTCTGTACAACTACATCATCCGATACGGAGATATATAAAAG....................................................................................................ATTGCTTCCTCTTTACTTCCCCCGGGATAATCATGAGGAAGAAATTGCCCGGTTAAAACTTCCTGCAGATGTTGGGGATGAGAATGGAGAGACAACTACTGCTGAGCGTAAAATAAGAATAAAACCATTGCCAAATTCAAAAGTTTCTAGTCCAAGGACCCCCCAAGCATCTGTTGATCTATCTGTCAGTAATCTTGGTTTGTCCAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCATCCTACTTGGATGCATTTCTGGATCCTGCTTTTATGTCCCTGATCAAAGACCCAGATCAGCGACGTAAAGAACAATGGGAAAAAACAGCCCAAGCGCAAAATAATTGGAACTGCTTCAAAATGCTTGGATATGGTGGACTTGGGGGACCTGCTTTATCAGCTGCAGAAG-ATATACCCTTCATTCTAGATATCTTGCAAAAGCGAATTCTATGAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209468" ref_strand="+" ref_description="SGN-E209468 [cLEC-54-I11]">
      <seq>tgcgatgggctgtatctataccgaagccaaaaattacccgcgagaacctgctgctcatgttgcaataagaactgtacggcggtttcttgagaaacagaaagataaaatagaggcagtcgttttctgtacaactacatcatccgatacggagatatataaaagattgcttcctctttacttcccccgggataatcatgaggaagaaattgcccggttaaaacttcctgcagatgttggggatgagaatggagagacaactactgctgagcgtaaaataagaataaaaccattgccaaattcaaaagtttctagtccaaggaccccccaagcatctgttgatctatctgtcagtaatcttggtttgtccagaaggagttcatcctacttggatgcatttctggatcctggctttatgtccctgatcaaagacccagatcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="79111" stop="81511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79411" g_stop="79478" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79479" i_stop="79683" i_length="205">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79684" g_stop="79777" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="162" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79778" i_stop="79877" i_length="100">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79878" g_stop="80087" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="372" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80088" i_stop="81142" i_length="1055">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81143" g_stop="81211" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="441" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E209468" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79411" e_stop="79478"/>
          <exon e_start="79684" e_stop="79777"/>
          <exon e_start="79878" e_stop="80087"/>
          <exon e_start="81143" e_stop="81211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGATGGGCTGTATCTATACCGAAGCCAAAAATTACCCGCGAGAACCTGCTGCTCATGTTGCAATAAGTAATATATCTCTCTGTTTTCTTAATAAATTGCTTATCTGTTCGTTATTTGATTTTCAAATAAAGATAAAGATAATTCTTTCTGTGCTGAGACTGGAAAGAACTGATATCTCCTTCAGAAAGATCCCCTCATATTAAATATATTTGCTTAAATGTTTTATCTGCCAGTTGTTGAATGTAACTCCATCTTTTATTGTTTTGATTAGGAACTGTACGGCGGTTTCTTGAGAAACAGAAAGATAAAATAGAGGCAGTCGTTTTCTGTACAACTACATCATCCGATACGGAGATATATAAAAGGTATACTTGGTACATTGTTTTCTACTATATACTTGAGAGGGTGCAAGCATTGTGTATATTGTTTTGGCTGTTAAAATTTACAGTATCTTTGATTTTGCAGATTGCTTCCTCTTTACTTCCCCCGGGATAATCATGAGGAAGAAATTGCCCGGTTAAAACTTCCTGCAGATGTTGGGGATGAGAATGGAGAGACAACTACTGCTGAGCGTAAAATAAGAATAAAACCATTGCCAAATTCAAAAGTTTCTAGTCCAAGGACCCCCCAAGCATCTGTTGATCTATCTGTCAGTAATCTTGGTTTGTCCAGAAGGTTAGTGATGAATTAAGCAGTTCATTCACAACAAATATCACGTGAACAGCAGGCTTGCAAGATACAGTTTGAAGTGTTAAAGTTTGTTACAACTTAAAAACTGGTTTCTTTGCTCATGTCTCCCCCGAATTTTTTAATCTATGTGTATTACGGTTGAATGAGACAAAGGAAATTATTGCTTACATAAAGAATAGCTCCTGGTATCCCTAAGCTTTTGGCTGTCGCTTTATAATATCACTACCTTTCGACTTTGAATGTCCTATTTGAAACAAACTAATTAGCTCAAGGTTTATGACTGGTCCTTTCAAAAGCGAAGATGCTAAAACAAATGTCATGTTTTTTTTGTGATTACAGTTAAGAGACTGGTGTAATATGTAAGAAGGGCCTTCTGAAGTGAAGTCTTATTTAGGTGTGATTAAACAAGTTTCAAGTTGAACATAGTGCTGCACTCTATGAGTTTTAATAGGATGAACTTCTCCACCATCATTTTGCTGGAAATTTAGCTTGCATTCCACTCGATTAAATCCTTTGATGGTGGAAGTTCTTCTCTCTCTTGGCCTTGATCAATAAATAAAGCATGATCCCCGAACAAAAAGATTACACCATATATCTTAATTGACTATCTTGAATTACATTTTCGTCCAGATGGCATCAGCTTCCATTATTAAGGACTTCGGAGATCACTCCGCATTCATGTGTTTCCAAGCCAGTATAAGAGTCAAACTAAAGCACTTTTTGTACTTGCAGCTCATCATTCTGTTTTCTCATTAATGAAAAACCATAATTCATTGTTCTTAACAATAGTCCTGGGATTTTTTGGTTTTTTGTTATTTCTGATCATATTGCTGCAGTGAATTTTTGGTTGTAAATTATAATCAAGAGTAAATAACATTAAGAAAGATACTTCCTGTTACTTTTACATTGTAATATTACTTCGATTAAAAATTCCATTATTGTTGTTTGTTATCTAGTTTCTACATGTTGAAATCATATTTGTGTGGCATATGACTTGATTATATATCGTTAAACCAGACTGAGAAAATTTTCTTAAACAGGAGTTCATCCTACTTGGATGCATTTCTGGATCCTGCTTTTATGTCCCTGATCAAAGACCCAGATCAGCG</genome_strand>
        <mrna_strand>TGCGATGGGCTGTATCTATACCGAAGCCAAAAATTACCCGCGAGAACCTGCTGCTCATGTTGCAATAA.............................................................................................................................................................................................................GAACTGTACGGCGGTTTCTTGAGAAACAGAAAGATAAAATAGAGGCAGTCGTTTTCTGTACAACTACATCATCCGATACGGAGATATATAAAAG....................................................................................................ATTGCTTCCTCTTTACTTCCCCCGGGATAATCATGAGGAAGAAATTGCCCGGTTAAAACTTCCTGCAGATGTTGGGGATGAGAATGGAGAGACAACTACTGCTGAGCGTAAAATAAGAATAAAACCATTGCCAAATTCAAAAGTTTCTAGTCCAAGGACCCCCCAAGCATCTGTTGATCTATCTGTCAGTAATCTTGGTTTGTCCAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCATCCTACTTGGATGCATTTCTGGATCCTGGCTTTATGTCCCTGATCAAAGACCCAGATCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544330" ref_strand="+" ref_description="SGN-E544330 [TUS-66-J18](-)">
      <seq>gcaaaagcgaattctatgaatctttcagaaattgcggaaatgaaaatcgtttaccgaggaggggttgatagtgagggtcgtccagttatggtagtcgtgggagcacatttcctgctaagatgtcttgatcttgagagatttaccctgtacgttgtaaaggagttcgagcctgtgattcagaagccttactcaatagtgtatttacattctgcagcgtctttacagatgcaaccagatttaggctggatgaagagattacaacaaatacttggacggaaacaccagcgtaaccttcatgcaatatacgtgcttcaccctacctttggactgaagtctgcaatttttgctttgcaactcttcgtcgataatgtggtgtggaaaaaagtagtatatcttgatcgtcttctacagctattccgctatgttcctcgtgaacagttaactattcctgactttgtattccagcatgatttggaagtgaatggagggaagggcctaatcgttgatccgagaacaaaatatgtttatcagagaccttagtgtccatatccatgagctaaaagattcatcagttaaaccagctatggagcaaattgtgagataatgaagctgggttatctcttgttaatttctctgttgtttgtaaaattttatttgttgattaatttgtgcagacaatgttgtcttgcctcctgtggcaataaaatgaccccctcccctatcgttttccatgtaatgaatgtatattttatttagaatttgattttatatttagtcggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="81045" stop="84066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81345" g_stop="81394" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81395" i_stop="81675" i_length="281">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81676" g_stop="81784" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="159" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81785" i_stop="81912" i_length="128">
            <donor d_prob="0.614" d_score="1.00"/>
            <acceptor a_prob="0.509" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81913" g_stop="81980" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="227" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81981" i_stop="82518" i_length="538">
            <donor d_prob="0.706" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82519" g_stop="82588" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="297" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82589" i_stop="82694" i_length="106">
            <donor d_prob="0.778" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82695" g_stop="82769" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="372" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82770" i_stop="82883" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82884" g_stop="82975" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="464" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82976" i_stop="83445" i_length="470">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="83446" g_stop="83759" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="778" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="780" polyA_stop="797"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E544330" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81345" e_stop="81394"/>
          <exon e_start="81676" e_stop="81784"/>
          <exon e_start="81913" e_stop="81980"/>
          <exon e_start="82519" e_stop="82588"/>
          <exon e_start="82695" e_stop="82769"/>
          <exon e_start="82884" e_stop="82975"/>
          <exon e_start="83446" e_stop="83759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAGCGAATTCTATGAATCTTTCAGAAATTGCGGAAATGAAAATCGTGTAAGCAGCTTTCTGTAAATGATGTCTTTGCTATCATTGTTTCTTGGTCCATGGTCTTGTCATATGAATGGGAATACTTGCATCTAACTGTTTGGAGCCTCAGATATGCACTTGAATAGAGTGAAAGTAGGACGAGGTCTGCATTTACCCGATTGCATGCAAAGGTTTTGTAAAATTAACATGACTACTAGATAACTGAATTTTTATTAACACATCCTTGAATAAGCCTCGCCTCACCTTGCTTATGTTAAACTTATGTTTCTCATTGGCTGTGTTTTCAGTTACCGAGGAGGGGTTGATAGTGAGGGTCGTCCAGTTATGGTAGTCGTGGGAGCACATTTCCTGCTAAGATGTCTTGATCTTGAGAGATTTACCCTGTACGTTGTAAAGGTAGTGATAATTTCTTCTACATTGCATGAGATCTATCCATAGCAATTGTATGATTCATAATTTGTTTTACTTCAATTTTTTCCTGCATGATTTGGCAGTAAATAGTTATTCTGCTCGTCACATTTCAGGAGTTCGAGCCTGTGATTCAGAAGCCTTACTCAATAGTGTATTTACATTCTGCAGCGTCTTTACAGATGTAAGTTTTAGCTTCTGGCCATATTTTCATTGGGTCATGTCCGTATGATGGATAGACCTTGTGGTGAAGTTTGTTAATTAGTATAAGTGAAAACAATCAATAATTTAGATTTAAATCTTTCTCTGATCAGAATGATATACAATCTTCACTATCTCCAAAACATCTTGTATCAGCTTAAGAACTAACGTGTATACATTGCCGGACATCATTATTGTTCTTTCTGAGTCATTTTGCTTTGAGGATCCTTTTATCTACAGTTCTTTGTGTTCATATGATTGATCAGTATCCCCAAACAAATAAAATAGCTCCCCTCCCCCCCGCACACACACACACACACAACAACCTTTTTCTTTTAATGCAATCCTTGATCTCAATGTGGTTGGTTCACTGAAAGAGTCCTTTCATAATGCTGATTAATGAGCTTCTGTTTTATTTTACTTTGGTGGTTCGGTTGTGTCACTAGTTTTTTTTGTACCTCAAATTTGGCAATACTTTTTCTTAGATGCTTCCGGAATTTTGTTTCGTTGTTCAAAAACAGGCAACCAGATTTAGGCTGGATGAAGAGATTACAACAAATACTTGGACGGAAACACCAGCGTAACCTTCATGTATGCAATGCCTTTGCCCATTTTTCTTGTCCTTGGCATGGTTTCATAAAGCTGGACATTATTTCTGTTTCTTTTGTCTTTCTAAATCTCGTTTCTTTGTGAGCAGGCAATATACGTGCTTCACCCTACCTTTGGACTGAAGTCTGCAATTTTTGCTTTGCAACTCTTCGTCGATAATGTGGTAACTATTTTCTTAGCGCATTCCTTTTTTTCTTTTCATCTAATCCCATTATTACTTGTAAACATACTCCATTCCATTTCTCTGAAGCCTTATCTCTGGGTAACTAATCTGCAGGTGTGGAAAAAAGTAGTATATCTTGATCGTCTTCTACAGCTATTCCGCTATGTTCCTCGTGAACAGTTAACTATTCCTGACTTTGTATTCCAGTTAAGTAATCATACCACAATCCTTCATTTATCACGTCAGAATGTACGAGAGTTGAGTGCAACGTGCCAGTTTACTTGATAGTATTATGCATTGCCCATAATTTTGCTCTATTGGGTGGGAAGATAATAGTTCCTACTTATCTTGATTTTAGGCTGGCTACTGTCTCATTATAGTCTGAATTTCTTGTCGAGTTCTGGCGCTTTTCACATGTAGCAACTCAGAGGCGGATGCAATATGTGTAGCAACAGTTAGCTCCCTTCTTGTAACGAGCACTTGACTACTTACATAAAGATAGAACCCATCAGTTTAAATCTTAGATTCGCCTTTGTTGCAACTGTCATCTAACGTGTTCTTGGACTTAGATTGAACTCATCATCAGTTTAAATCATGGATTTGCCTCTGTAGCAACATCGTCTCCCCTCCCTCCATGTAATGTGTTCTTGAACTACGTGTCATCTCGTGATTGCAGGCATGATTTGGAAGTGAATGGAGGGAAGGGCCTAATCGTTGATCCGAGAACAAAATATGTTTATCAGAGACCTTAGTGTCCATATCCATGAGCTAAAAGATTCATCAGTTAAACCAGCTATGGAGCAAATTGTGAGATAATGAAGCTGGGTTATCTCTTGTTAATTTCTCTGTTGTTTGTAAAATTTTATTTGTTGATTAATTTGTGCAGACAATGTTGTCTTGCCTCCTGTGGCAATAAAATGACCCCCTCCCCTATCGTTTTCCATGTAATGAATGTATATTTTATTTAGAATTTGATTTTATATTTAGTCG</genome_strand>
        <mrna_strand>GCAAAAGCGAATTCTATGAATCTTTCAGAAATTGCGGAAATGAAAATCGT.........................................................................................................................................................................................................................................................................................TTACCGAGGAGGGGTTGATAGTGAGGGTCGTCCAGTTATGGTAGTCGTGGGAGCACATTTCCTGCTAAGATGTCTTGATCTTGAGAGATTTACCCTGTACGTTGTAAAG................................................................................................................................GAGTTCGAGCCTGTGATTCAGAAGCCTTACTCAATAGTGTATTTACATTCTGCAGCGTCTTTACAGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCAGATTTAGGCTGGATGAAGAGATTACAACAAATACTTGGACGGAAACACCAGCGTAACCTTCAT..........................................................................................................GCAATATACGTGCTTCACCCTACCTTTGGACTGAAGTCTGCAATTTTTGCTTTGCAACTCTTCGTCGATAATGTG..................................................................................................................GTGTGGAAAAAAGTAGTATATCTTGATCGTCTTCTACAGCTATTCCGCTATGTTCCTCGTGAACAGTTAACTATTCCTGACTTTGTATTCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGATTTGGAAGTGAATGGAGGGAAGGGCCTAATCGTTGATCCGAGAACAAAATATGTTTATCAGAGACCTTAGTGTCCATATCCATGAGCTAAAAGATTCATCAGTTAAACCAGCTATGGAGCAAATTGTGAGATAATGAAGCTGGGTTATCTCTTGTTAATTTCTCTGTTGTTTGTAAAATTTTATTTGTTGATTAATTTGTGCAGACAATGTTGTCTTGCCTCCTGTGGCAATAAAATGACCCCCTCCCCTATCGTTTTCCATGTAATGAATGTATATTTTATTTAGAATTTGATTTTATATTTAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288999" ref_strand="-" ref_description="SGN-E288999 [cLES-17-L9]">
      <seq>tcatgcaatatacgtgcttcaccctacctttggactgaagtctgcaatttttgctttgcaactcttcgtcgataatgtggtgtggaaaaaagtagtatatcttgatcgtcttcaacagctattccgctatgttcctcgtgaacagttaactattcctgactttgtattccagcatgatttggaagtgaatggagggaagggcctaatcgttgatccgagaacaaaatatgtttatcagagaccttagtgtccatatccatgagctaaaagattcatcagttaaaccagctatggagcaaattgtgagataatgaagctgggttatctcttgttaatttctctgttgtttgtaaaattttatttgttgattaatttgtgcagacaatgttgtcttgcctcctgtggcaataaaatgaccccctcccctatcgttttccatgtaatgaatgtatattttatttagaatttgattttatatttagtcgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="82392" stop="84066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82585" g_stop="82588" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82589" i_stop="82694" i_length="106">
            <donor d_prob="0.778" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82695" g_stop="82769" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="79" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82770" i_stop="82883" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82884" g_stop="82975" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="171" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82976" i_stop="83445" i_length="470">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83446" g_stop="83761" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="487" r_length="316" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="488" polyA_stop="502"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E288999" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288999" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="82585" e_stop="82588"/>
          <exon e_start="82695" e_stop="82769"/>
          <exon e_start="82884" e_stop="82975"/>
          <exon e_start="83446" e_stop="83761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGTATGCAATGCCTTTGCCCATTTTTCTTGTCCTTGGCATGGTTTCATAAAGCTGGACATTATTTCTGTTTCTTTTGTCTTTCTAAATCTCGTTTCTTTGTGAGCAGGCAATATACGTGCTTCACCCTACCTTTGGACTGAAGTCTGCAATTTTTGCTTTGCAACTCTTCGTCGATAATGTGGTAACTATTTTCTTAGCGCATTCCTTTTTTTCTTTTCATCTAATCCCATTATTACTTGTAAACATACTCCATTCCATTTCTCTGAAGCCTTATCTCTGGGTAACTAATCTGCAGGTGTGGAAAAAAGTAGTATATCTTGATCGTCTTCTACAGCTATTCCGCTATGTTCCTCGTGAACAGTTAACTATTCCTGACTTTGTATTCCAGTTAAGTAATCATACCACAATCCTTCATTTATCACGTCAGAATGTACGAGAGTTGAGTGCAACGTGCCAGTTTACTTGATAGTATTATGCATTGCCCATAATTTTGCTCTATTGGGTGGGAAGATAATAGTTCCTACTTATCTTGATTTTAGGCTGGCTACTGTCTCATTATAGTCTGAATTTCTTGTCGAGTTCTGGCGCTTTTCACATGTAGCAACTCAGAGGCGGATGCAATATGTGTAGCAACAGTTAGCTCCCTTCTTGTAACGAGCACTTGACTACTTACATAAAGATAGAACCCATCAGTTTAAATCTTAGATTCGCCTTTGTTGCAACTGTCATCTAACGTGTTCTTGGACTTAGATTGAACTCATCATCAGTTTAAATCATGGATTTGCCTCTGTAGCAACATCGTCTCCCCTCCCTCCATGTAATGTGTTCTTGAACTACGTGTCATCTCGTGATTGCAGGCATGATTTGGAAGTGAATGGAGGGAAGGGCCTAATCGTTGATCCGAGAACAAAATATGTTTATCAGAGACCTTAGTGTCCATATCCATGAGCTAAAAGATTCATCAGTTAAACCAGCTATGGAGCAAATTGTGAGATAATGAAGCTGGGTTATCTCTTGTTAATTTCTCTGTTGTTTGTAAAATTTTATTTGTTGATTAATTTGTGCAGACAATGTTGTCTTGCCTCCTGTGGCAATAAAATGACCCCCTCCCCTATCGTTTTCCATGTAATGAATGTATATTTTATTTAGAATTTGATTTTATATTTAGTCGAC</genome_strand>
        <mrna_strand>TCAT..........................................................................................................GCAATATACGTGCTTCACCCTACCTTTGGACTGAAGTCTGCAATTTTTGCTTTGCAACTCTTCGTCGATAATGTG..................................................................................................................GTGTGGAAAAAAGTAGTATATCTTGATCGTCTTCAACAGCTATTCCGCTATGTTCCTCGTGAACAGTTAACTATTCCTGACTTTGTATTCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGATTTGGAAGTGAATGGAGGGAAGGGCCTAATCGTTGATCCGAGAACAAAATATGTTTATCAGAGACCTTAGTGTCCATATCCATGAGCTAAAAGATTCATCAGTTAAACCAGCTATGGAGCAAATTGTGAGATAATGAAGCTGGGTTATCTCTTGTTAATTTCTCTGTTGTTTGTAAAATTTTATTTGTTGATTAATTTGTGCAGACAATGTTGTCTTGCCTCCTGTGGCAATAAAATGACCCCCTCCCCTATCGTTTTCCATGTAATGAATGTATATTTTATTTAGAATTTGATTTTATATTTAGTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331805" ref_strand="-" ref_description="SGN-E331805 [cTOD-7-E24]">
      <seq>catgcaatatacgtgcttcaccctacctttggactgaagtctgcaatttttgctttgcaactcttcgtcgataatgtggtgtggaaaaaagtagtatatcttgatcgtcttctacagctattccgctatgttcctcgtgaacagttaactattcctgactttgtattccagcatgatttggaagtgaatggagggaagggcctaatcgttgatccgagaacaaaatatgtttatcagagaccttagtgtccatatccatgagctaaaagattcatcagttaaaccagctatggagcaaattgtgagataatgaagctgggttatctcttgttaatttctctgttgtttgtaaaattttatttgttgattaatttgtgcagacaatgttgtcttgcctcctgtggcaataaaatgaccccctcccctatcgttttccatgtaatgaatgtatattttatttagaatttgattttatatttagtcgacattaaaaaaaaaaaaaaaaaaactcgagactagtttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="82392" stop="84066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82586" g_stop="82588" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82589" i_stop="82694" i_length="106">
            <donor d_prob="0.778" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82695" g_stop="82769" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="78" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82770" i_stop="82883" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82884" g_stop="82975" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="170" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82976" i_stop="83445" i_length="470">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83446" g_stop="83765" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="490" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="491" polyA_stop="509"/>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E331805" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331805" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="82586" e_stop="82588"/>
          <exon e_start="82695" e_stop="82769"/>
          <exon e_start="82884" e_stop="82975"/>
          <exon e_start="83446" e_stop="83765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTATGCAATGCCTTTGCCCATTTTTCTTGTCCTTGGCATGGTTTCATAAAGCTGGACATTATTTCTGTTTCTTTTGTCTTTCTAAATCTCGTTTCTTTGTGAGCAGGCAATATACGTGCTTCACCCTACCTTTGGACTGAAGTCTGCAATTTTTGCTTTGCAACTCTTCGTCGATAATGTGGTAACTATTTTCTTAGCGCATTCCTTTTTTTCTTTTCATCTAATCCCATTATTACTTGTAAACATACTCCATTCCATTTCTCTGAAGCCTTATCTCTGGGTAACTAATCTGCAGGTGTGGAAAAAAGTAGTATATCTTGATCGTCTTCTACAGCTATTCCGCTATGTTCCTCGTGAACAGTTAACTATTCCTGACTTTGTATTCCAGTTAAGTAATCATACCACAATCCTTCATTTATCACGTCAGAATGTACGAGAGTTGAGTGCAACGTGCCAGTTTACTTGATAGTATTATGCATTGCCCATAATTTTGCTCTATTGGGTGGGAAGATAATAGTTCCTACTTATCTTGATTTTAGGCTGGCTACTGTCTCATTATAGTCTGAATTTCTTGTCGAGTTCTGGCGCTTTTCACATGTAGCAACTCAGAGGCGGATGCAATATGTGTAGCAACAGTTAGCTCCCTTCTTGTAACGAGCACTTGACTACTTACATAAAGATAGAACCCATCAGTTTAAATCTTAGATTCGCCTTTGTTGCAACTGTCATCTAACGTGTTCTTGGACTTAGATTGAACTCATCATCAGTTTAAATCATGGATTTGCCTCTGTAGCAACATCGTCTCCCCTCCCTCCATGTAATGTGTTCTTGAACTACGTGTCATCTCGTGATTGCAGGCATGATTTGGAAGTGAATGGAGGGAAGGGCCTAATCGTTGATCCGAGAACAAAATATGTTTATCAGAGACCTTAGTGTCCATATCCATGAGCTAAAAGATTCATCAGTTAAACCAGCTATGGAGCAAATTGTGAGATAATGAAGCTGGGTTATCTCTTGTTAATTTCTCTGTTGTTTGTAAAATTTTATTTGTTGATTAATTTGTGCAGACAATGTTGTCTTGCCTCCTGTGGCAATAAAATGACCCCCTCCCCTATCGTTTTCCATGTAATGAATGTATATTTTATTTAGAATTTGATTTTATATTTAGTCGACATTA</genome_strand>
        <mrna_strand>CAT..........................................................................................................GCAATATACGTGCTTCACCCTACCTTTGGACTGAAGTCTGCAATTTTTGCTTTGCAACTCTTCGTCGATAATGTG..................................................................................................................GTGTGGAAAAAAGTAGTATATCTTGATCGTCTTCTACAGCTATTCCGCTATGTTCCTCGTGAACAGTTAACTATTCCTGACTTTGTATTCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGATTTGGAAGTGAATGGAGGGAAGGGCCTAATCGTTGATCCGAGAACAAAATATGTTTATCAGAGACCTTAGTGTCCATATCCATGAGCTAAAAGATTCATCAGTTAAACCAGCTATGGAGCAAATTGTGAGATAATGAAGCTGGGTTATCTCTTGTTAATTTCTCTGTTGTTTGTAAAATTTTATTTGTTGATTAATTTGTGCAGACAATGTTGTCTTGCCTCCTGTGGCAATAAAATGACCCCCTCCCCTATCGTTTTCCATGTAATGAATGTATATTTTATTTAGAATTTGATTTTATATTTAGTCGACATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734455" ref_strand="+" ref_description="SGN-E734455 [LB12CH04]">
      <seq>caggaatccagaaggggatcagcctcaaagagtgaagctcaagatatggctataagcatcttgcgtctacgtgcagacctgcagaatgcagttcagagtgaaaattatgatttggcagctaaattacgagatgaaatttccaagcttgaggcagagtctctgactacatcgataagagctcaggcatatgaaaatgctcaatatgcatttcgattaggccagaaagtgaagcacaagaattttggatatcgtggtgttatatgtgggatggacccaatatgttgtgaatcgaattcatggatggaaaatgctcaagtagaaaagttgactcgtggtcctgatcagcccttttatcaggtgctggtggatgtacatacagatcccaatctgttagtggcatatgtacctgaggaaagtctagtggcgcctagcgaaccagataaggatcgatttgatcatccctacacctcattcttattttttgggatggatgctgccggagatttcataccaatcaagcagctgcgagagaagtacaacaagcctcggcatgaggtgccttatgatccggacaatgagaagagtggagaaagttcctagatgcgaccaggagttctgttcccctctaagcaatttctggatatatgagaaattttcttgagtgaagagaaatgccttccttcccctctttccattatggtggggtttacctcatcttgaaagactgcaaaatatgttttctgcacaatgtccttagaatacacaacacgattgtggaggctcttgtattgttctggagattttggatgaccatgaccaaagtttattgagcttctgttattgtcagcttgtttcaacagaaaatggtcaatgtatattcatgttttactgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="86039" stop="89155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86339" g_stop="86409" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86410" i_stop="86561" i_length="152">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.690" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86562" g_stop="86734" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="244" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86735" i_stop="87280" i_length="546">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87281" g_stop="87393" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="357" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87394" i_stop="88111" i_length="718">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88112" g_stop="88157" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="403" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88158" i_stop="88280" i_length="123">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88281" g_stop="88321" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="444" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88322" i_stop="88404" i_length="83">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="88405" g_stop="88854" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="894" r_length="450" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E734455" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86339" e_stop="86409"/>
          <exon e_start="86562" e_stop="86734"/>
          <exon e_start="87281" e_stop="87393"/>
          <exon e_start="88112" e_stop="88157"/>
          <exon e_start="88281" e_stop="88321"/>
          <exon e_start="88405" e_stop="88854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAATCCAGAAGGGGATCAGCCTCAAAGAGTGAAGCTCAAGATATGGCTATAAGCATCTTGCGTCTACGGTAAGCATACTCACATTCTTTTTGATATTTTTTCCAAAAGCTTTGAGTGCTGGATATCAAGCTATTTCTTGAATTGATTACAAAGATTCTATGTATAGTATGTTCCAAAGGTACCTTTTGAAGCATCTCTGATCAGCTTTTGCTTCATCCAGTGCAGACCTGCAGAATGCAGTTCAGAGTGAAAATTATGATTTGGCAGCTAAATTACGAGATGAAATTTCCGAGCTTGAGGCAGAGTCTCTGACTACATCGATAAGAGCTCAGGCATATGAAAATGCTCAATATGCATTTCGATTAGGCCAGAAAGTGAAGCACAAGAATTTTGGTATGGAATCTTTAACTTTTGGAGTGGAAGGAACAGCCTTTGTCTAATTCAAAAGATAACCAAATGTAAAAACAGATATACAGATCCTCATATGTTCTCCATATAATTAACTTGTGCCTAAAAGTGATATATAAATTTGAGATCCATTATCAAGCTTCCTGGTAGGATCGTCAAATCTTGATGATTTGATTAATTTGCAGTATTTCATGGCAGAAGTTTTACATTGTAACTGCATGAACTACTTGAACGTCACTGACTGATCAACCCTTGCTTATTTCTGGTGTTGACTTGTGAGGATACATCATCAGGAAGTGCCTTCAATATTATCTTTTAGTGAAGTGCAATACCTTGCATGGAGTGATGTGCTATACCTTGCATGGACATCTTGTGGCTCAATGTATCGAATAATATAACTATTCTCCTGACACATTGCTTCCTCCTGTAAAGATTCCCTTTACTGACATTCATGGAACCCCTAGATTCAGCTCAATTAGTAAAAGTTACTCAAGTTATTTATAGTATTGAACCCTTATGTTGTGACTTCAGGATATCGTGGTGTTATATGTGGGATGGACCCAATATGTTGTGAATCGAATTCATGGATGGAAAATGCTCAAGTAGAAAAGTTGACTCGTGGTCCTGATCAGCCCTTTTATCAGGTTTTGTTTGGATCTTGTAACGTAAAAATATGTTTCATCTATTGCAAGCAAAGATCAATTCAATTTATCTATCTGAGCATGGTCTAGTATCAACAGTAATTCTTTGCGGCTACATCCCAAGGAAAGATCAAATAACTTTCTAGCTGTGTGTCAAATTGCCAACCACCTTTTGTACTTTGTAGTCCCCTTCCTCCTTAATATCTGAAATTTACCGCTTATGCTGTAGAGTTCCTGTTCCTAGCTTCGTCGTCTCATAATAATCACAAATGGTGCATATGTTACTGTGTATTAACCTGATAATTTACAAACTTCTGTGTGGGTCTCTAGCAACTGTAGCCTTGAGCATACATGACAATTTTTCAACCTGTTTACAAACATAGAAAAATAATTTTACCTCTAGGCCCTCATTTTTACAAGTTCAAAGAACGATCTCGAATGACGTGGAAGTTTGACGTCTTTTAGAGTTAGGTACCCGAATGATGACCCCCAGTGCAAAAACTATATGAGCTTCACCTAAGAAACATTTTCCTGATACAATTAAAAGAATTGTTAGAAACTTCTTATGCATCCTGTGCAAGTTCTTGATCCTAATCCACAGTCAAACTTCAGCTCTCATTTTTCTGCGTTAGAGGGCCTGAAAGTGGTGCGGCTCCAAGTGATATTTCTTTAGTTATTATTTCTGATCTTTTTAGTAGACTAAATATAGATATATTTTCAGGTGCTGGTGGATGTACATACAGATCCCAATCTGTTAGTGGCATATGGTAAGTGAAATTGGTGACCATGAATAAGCATTTCTAATACCTAGATAGTTAGTATGAGCCAAGAAAGGTCCATATACTGTATGGAATTGTGTCTCATTAGTCTGATAATTGTTCATCATGCAGTACCTGAGGAAAGTCTAGTGGCGCCTAGCGAACCAGATAAGGTATGTATACATCTAATCTGAAATTACAACACAAAAAGTTGTCATTCAATCTCTAACTTGGTGAAAAGCTCAACCACGTGCAGGATCGATTTGATCATCCCTACACCTCATTCTTATTTTTTGGGATGGATGCTGCCGGAGATTTCATACCAATCAAGCAGCTGCGAGAGAAGTACAACAAGCCTCGGCATGAGGTGCCTTATGATCCGGACAATGAGAAGAGTGGAGAAAGTTCCTAGATGCGACCAGGAGTTCTGTTCCCCTCTAAGCAATTTCTGGATATATGAGAAATTTTCTTGAGTGAAGAGAAATGCCTTCCTTCCCCTCTTTCCATTATGGTGGGGTTTACCTCATCTTGCAAGACTGCAAAATATGTTTTCTGCACAATGTCCTTGGAATACACAACACGATTGTGGAGGCTCTTGTATTGTTCTGGAGATTTTGGATGACCATGACCAAAGTTTATTGAGCTTCTGTTATTGTCAGCTTGTTTCAACAGAAAATGGTCAATGTATATTCATGTTTTACTGCAA</genome_strand>
        <mrna_strand>CAGGAATCCAGAAGGGGATCAGCCTCAAAGAGTGAAGCTCAAGATATGGCTATAAGCATCTTGCGTCTACG........................................................................................................................................................TGCAGACCTGCAGAATGCAGTTCAGAGTGAAAATTATGATTTGGCAGCTAAATTACGAGATGAAATTTCCAAGCTTGAGGCAGAGTCTCTGACTACATCGATAAGAGCTCAGGCATATGAAAATGCTCAATATGCATTTCGATTAGGCCAGAAAGTGAAGCACAAGAATTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCGTGGTGTTATATGTGGGATGGACCCAATATGTTGTGAATCGAATTCATGGATGGAAAATGCTCAAGTAGAAAAGTTGACTCGTGGTCCTGATCAGCCCTTTTATCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGGTGGATGTACATACAGATCCCAATCTGTTAGTGGCATATG...........................................................................................................................TACCTGAGGAAAGTCTAGTGGCGCCTAGCGAACCAGATAAG...................................................................................GATCGATTTGATCATCCCTACACCTCATTCTTATTTTTTGGGATGGATGCTGCCGGAGATTTCATACCAATCAAGCAGCTGCGAGAGAAGTACAACAAGCCTCGGCATGAGGTGCCTTATGATCCGGACAATGAGAAGAGTGGAGAAAGTTCCTAGATGCGACCAGGAGTTCTGTTCCCCTCTAAGCAATTTCTGGATATATGAGAAATTTTCTTGAGTGAAGAGAAATGCCTTCCTTCCCCTCTTTCCATTATGGTGGGGTTTACCTCATCTTGAAAGACTGCAAAATATGTTTTCTGCACAATGTCCTTAGAATACACAACACGATTGTGGAGGCTCTTGTATTGTTCTGGAGATTTTGGATGACCATGACCAAAGTTTATTGAGCTTCTGTTATTGTCAGCTTGTTTCAACAGAAAATGGTCAATGTATATTCATGTTTTACTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212395" ref_strand="+" ref_description="SGN-E212395 [cLEC-74-D21]">
      <seq>gggttcacagtcatctcagagacaaattggagattattggcaagctaatggtggtagttctagggtgcgtccaggctgtgccagtgagctacccaaccgaagtgttttctaccatgggtcctcatctgggacgaaagaatcaccaattcacatcccttcaggtgcttttgactctttgagctacattaagggggaccgttttacatctgaacgttcctctaataatgcatccgagaattttctcattagttctaacaatacggatttgaaatctgttaaaggcttcaacttaaatgtgctagcaacaagtgcactcagcgaggaagcgccaaggcaagatgttgagtttagtaatgaaaaaagagagcgtccagaccctgtgacagttttgccatggcttaaagctaaagcaaattataaaaatgaggatgtccatacaaggataggtggaacttcagcaaattcaggatttgtccaggctcactctaactctcctttctgccagaatgatccatcagctttggaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="95856" stop="94728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95556" g_stop="95028" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E212395" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95556" e_stop="95028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTCACAGTCATCTCAGAGACAAATTGGAGATTATTGGCAAGCTAATGGTGGTAGTTCTAGGGTGCGTCCAGGCTGTGCCAGTGAGCTACCCAACCGAAGTGTTTTCTACCATGGGTCCTCATCTGGGACGAAAGAATCACCAATTCACATCCCTTCAGGTGCTTTTGACTCTTTGAGCTACATTAAGGGGGACCGTTTTACATCTGAACGTTCCTCTAATAATGCATCCGAGAATTTTCTCATTAGTTCTAACAATACGGATTTGAAATCTGTTAAAGGCTTCAACTTAAATGTGCTAGCAACAAGTGCACTCAGCGAGGAAGCGCCAAGGCAAGATGTTGAGTTTAGTAATGAAAAAAGAGAGCGTCAAGACCCTGTGACAGTTTTGCCATGGCTTAAAGCTAAAGCAAATTATAAAAATGAGGATGTCAATACAAGGATAGGTGGAACTTCAGCAAATTCAGGATTTGTCCAGGCTCACTCTAACTCTCCTTTCTGCCAGAGTGATCCATCAGCTTTGGAACAT</genome_strand>
        <mrna_strand>GGGTTCACAGTCATCTCAGAGACAAATTGGAGATTATTGGCAAGCTAATGGTGGTAGTTCTAGGGTGCGTCCAGGCTGTGCCAGTGAGCTACCCAACCGAAGTGTTTTCTACCATGGGTCCTCATCTGGGACGAAAGAATCACCAATTCACATCCCTTCAGGTGCTTTTGACTCTTTGAGCTACATTAAGGGGGACCGTTTTACATCTGAACGTTCCTCTAATAATGCATCCGAGAATTTTCTCATTAGTTCTAACAATACGGATTTGAAATCTGTTAAAGGCTTCAACTTAAATGTGCTAGCAACAAGTGCACTCAGCGAGGAAGCGCCAAGGCAAGATGTTGAGTTTAGTAATGAAAAAAGAGAGCGTCCAGACCCTGTGACAGTTTTGCCATGGCTTAAAGCTAAAGCAAATTATAAAAATGAGGATGTCCATACAAGGATAGGTGGAACTTCAGCAAATTCAGGATTTGTCCAGGCTCACTCTAACTCTCCTTTCTGCCAGAATGATCCATCAGCTTTGGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738296" ref_strand="+" ref_description="SGN-E738296 [LC13AE12]">
      <seq>ccttttgaggacttgtgtctttctctctcttcttcttgattttctcttctctctctaaaaaaaaaaagagttttctttttctttgtttctgagaagttgtggccccagcagatcgaaatctccaatcttttttcagtttgatgaggatctgagcttcttcaatggtgttagcagactacccactttgttcttttcttcaaattctttcttaaattattattactatacatcatgtaaaatgggagagagtagttattattattatactactatttattactttgtcttcttttgttcctctgcttcttcttttttgggggtcactcaattctccacatgattcttgaattgctgctgctgcaagtgttgttcaatccatgaaaaagggtgttgagaacaagtgtttacaagatgaggggttgaggaatgggaacacaagtgcactataaaggattccgaccaagctattactctatgagggaccttaatgaggattgtaacagcagcagttggaccccatcttatggagataagacattaccaaacagccaatattgtaatggtttcaccccgaggactacaactaatgcatatccagggtatgataaggacattctaaagcagagaatgcttgaacacgaagccatattcaggaatcagggggtggaacttcatcgcctttacagaactcaaagggacatgatggatgaatttaaaaggaaggaaatgcataaatatcgcgcatcaatggagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="102307" stop="96455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102014" g_stop="101590" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101589" i_stop="97289" i_length="4301">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97288" g_stop="97053" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="660" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97052" i_stop="96851" i_length="202">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96850" g_stop="96755" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="756" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E738296" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102014" e_stop="101590"/>
          <exon e_start="97288" e_stop="97053"/>
          <exon e_start="96850" e_stop="96755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAATAGAACTTGTGTCTTTCTCTCTCTTCTTCTTGATTTTCCCTTCTCTCTCTAAAAAAAAAAAAGAGTTTTCTTTTTCTTTGTTTCTGAGAAGTTGTGGCCCCAGCAGATCGAAATCTCCAATCTTTTTTCAGTTTTATGAGGATCTGAGCTTCTTCAATGGTGTTAGCAGACTACCCACTTTGTTCTTTTCTTCAAATTCTTTCTTAAATTATTATTACTATACATCATGTAAAATGGGAGAGAGTAGTTATTATTATTATACTACTATTTATTACTTTGTCTTCTTTTGTTCCTCTGCTTCTTCTTTTTTGGGGGTCACTCAATTCTCCATATGATTCTTGAATTGCTGCTGCTGCAAGTGTTGTTCAATCCATGAAAAAGGGTGTTGAGAACAAGTGTTTACAACATGAGGGGTTGAGGTAAATTCTTGTTGATTTATTCTTATTTGACTTTAAAAATCCAAGGATAAAATAAGTCTATTTTGTTCTTTTGCTTGGTTTTGGATTCTATGGGTAATTGTGTTTATGGAGTACATTTTTCTTTTTAATGTTAATTGCAGATTTGATTAAGTTCTTGAGTTTATTAGTGATCCTCTTTATTTGGGATCGTTTTTTCTGGATTTTTGTGTTTATGATTTCTTCATTTACTCTAACAAGTGAAAAAGATTGGAACTTTGTTGGATTTAAAGTGATTTGTGCTTCATTTACTCTTAAAGTTGAAAAACATTGGAACTTTGTTGGTTATAAAGTGAGTTGTTTTGGGTAATGGTTTAAACTATGAATTGCATGAGTAAAGACTGAGACTTTATTAGAAGAAAGACCTATACTAGTTATTAAAATCCAATTTAGGAAGTTCATGGTGAGAGTGAGTACATTAAAATCAATTTCATATGCTATTACAAGATTGGTTGCTAGTGATTGTTAGCAGATTATGATAATTGGAGAGTCGGGGATTTTCGTGTTGCTTTGATATGAATTTCTAGATTTTTGCTTCCTCTTTTATCCTTGGGCACTACATTGTGGTTCTAGTTAATGATGGACAAGGCGAGTTGGTTCCTCGTTACCTTGTGCTATAGGGAGCGATTAATGTTAGTCTTGAAATCGGTGCGTGTGAACGCAACTTTAACAAAATAGTAAATGAAAATGCGCACGAGAGTCCCGTATGTTGTTGAAAGTGCGCCCTAGTAGACAATTTTTTTTTTGGATTTTTTCCACATGTTGCACGTAAGAATCGTGCAAAGTGCGTGCGTTACGTGGGCTGCTTTGGTGCAATTTATCCTTTGACAATCGTGATGGCGAGGTTCTTGTAAGCATATTTTTAACAGGTCTATTTGGGATTATTTTACCTGGTAGAAACACAACTTTTGAATTTTATTTTATAAGGGCTTGATAGAAACACAATTATCTTTTGACTACCGGATAATTTTCGTTAACCGGCAGGCAGTAGAATCAGCTGATAGGCATAGGCAAGCGTAGCGAATCACATATATAAGCCCCTGCCAGCGCACGAATGGATAGGGTGGGCGAAGCGCGAAGGGGAAGATGCTGACCACATGTTCTTGTATCCAAGAATTGTCTCATATTAAGCTTAGGAAAGAGTACAAAAGAGAAGTCCACACATTCACACGTTGTGTGCAAAGTCTTCTACTCCTACAGATAATCTTGCATGTGCTGATCTGGCATTATTAATTTGTAATCTATACAACCAATTACATGGAAATGTTAACAAAGTATTAATTGCTAATTTATGTAAAGGGAGAACCGGCAAAGTTAATCTTTTAAAAGATGTACTTGAAGCAGGATAGGTTTTTCCATTCCTCTTTTTGGGAAATAAACCTGAGAGAGTCTTCTTCAGGTTAGTATCCACGCAATTGATCTTCTCTTCATTAATTCTTCAAGGCGTCCTGATAGTCTTGTTTCTGTCTTCATCAGTAGATTACGGTAATTGGATAGTTTTGGATTTTTGTGCTGCTTATAGACAAATTATCAAGTTAATTGCAATCTTGATCGGTGTCCGTTGTCTTGTTTGTTTCCTCTTGTATCCATGGGCACTATATTGTGGTTCAAATTAATGATGGGCAAGACAAGTTGGTTTCTCGTCACCCTATGCTGTAGGGAGTAATTAATTTTAAGTCTTGTAACCGGTGCGTGTGAACACAACTTTAACAGAATAGTAATTGAAAATGTCCATGGTATTCTCACATATTGGATGTTGAAAGTGTTCTCTAGGAGAAAAAAGCTAGTAGTTTTTTTTGTCCTTGTTGCCTATGAGAATCGTGCAGACTACGTGCAATAATTAGGTTGCTTTGACGCAATTTGTCCTTTAAAAATCATGATGGTGAGGTTTCTAAGAATATTTTTGGCAGGTCTATTTGGAATCATTTTACTTGGTAGAAACACATTTGTCTTTGATGTTAAACTTGATGCAAGAGAAGTACATTAACGAATTAATCAAGAAGGAATAGTTCATTAATTATCATTTTATTGTGATACATCTCTAAAGGTTATGGCATTTTAAAATAGATTTCTCCTCTTCTTTTATTCCTCCGGCCCCTCTGTCTATCTGTGTAAAAGAACTTTAAAAGAAACAGGGTAAGAAAGAAATGGAGGAAGATATCATTGGTGATGCAGACAAGTGATTCTATTTATAAGCTTCAGATAGCAGTACTCCATCACCTTTTACTACTTCTCGTATCATTTCAGATATTTGATCATTTGCTTTCTTACCCTTACTTGTGTATTACATTTGTTGTATTGTTTAATTCTATTTTGTAAGTAATTTGATGTAAGCTAGGAGTTTCCCCCCATATTTCTGGTTAGAATCGTGCAGAGTGCGTGCAATACTTGGGTGTCTCTAGTGCAATTGTCCTTTGACGTTTAGGTTTCTAAGAATATTTATAACAGGTCTATTTGGGATTATTTACTCTGTAAAAACAACTGTTTTCTATTGATGCTGATGAAATGTTCCAGTATCCAAGAAGTGTTGCTTGTTAAGCTTAGAAAAATACAAAAGAGAGAAGTCCACATGTTCACACATAGTGGGCAAAGTCTTCTACTCCCGGAGATAATCTTGCTGATTTATATAAACCGTAAAGAGAAAGTAATTGAAGTTAGCTTTTGAAAGATATACTTGAAGAAAACAGTTTTTTTGCCTTTCCTCTTTTTGGGAAAAAATAATGACCTGTGATAGTCTTTTCCAGGATAGTATCTATGCTATTGATCTTCTCTTCATAAAATTCTTCAAGGTATCCTGAAAGTCTTCTTACTATTTGTTTCCTCTGCTATCCTTGGGCACCATGTTGTGGTTGTAATTAATGATGGACAAAAGAAGAGTTGGTTATCCGTGACTGTATGCTATACAGAATAATTAATTTGAAGTCTTGAAATGGGTGCGTGTTAACATAACTTTAAGAAAGTATGCTCTAGGAGAAAATAAAAAGGAGTTTTCCCCCATGTTGCTGATGTGAACCGTGCGGAGTAGGTGCAGTACTGGGGTTGCTCTTGTGCAATTTGTCCTGTAGAAGGTCTTTTGGATTGTGTTACTTGGTATAAACATAGTTATCTTTCGATTCTGACTACATGCTCCAGTATCCAAGAATTGTTGCATGTTAAACTTAGGAAAGAGTACAAAAGAGAAGAAGTCCACAAGTTCACACTGTGGGTAAACTCCTCTACTCCTGGAGATAATTTTGCACGTGCTGATATGGCCTCATTAATTTGTAATCTGTACAACCGCTTTTATGGAAATGTTAATAAAGCATCAAGTGCTGATTTATGTAAGGGAAAGTTGTCGTAGTTAGATGTTATTTGAAGCAGAATAGTTTTTTTTTGTTTTCCTTTTCCTCTTTTTGGGAAAAAACCTAAAAAATTCTTCGTCATGACAGTAGCAGTGCAATTGATCTTCTCTTCATAAATTCTTCATCGCGTCCTTGATGTTCTTGTTTCTGTTTTAGGGTATAACCCATGGGCCCGTCAATGAATATATCCTCTAGTTAGCAAAAATAGTTTGTCTTTCAAGGCAAGTTGGGGGTTCTCTAAAATTAGAGAATCATACTTACCCCTACACAAACATGTAATTCTCAACGCATAACTAAAATACTCTTGAGGAACACCGAACTTTATGTAAGTGTAACCACAGCTTACTCTTAATCTCTACCCCTGCTATCAGTTATCGAACCTGTCGTATTTTTTTTATCCAACTCCGCCATCATTTCAAGAAATTGTATGTCTACTGATACAGCTTCCTTTATGTGACAAGTCCTCTTTTATTATTTTCAATCATCATGGTGTTGCACCTGTAAATCGGTGCATATGGAGGTCTAACGTGGGATATAGTTAAACCATCTTAGGCTTGTTCCTCAATTGATCATCTCTATGTTCTACTTGTTCATATCTATTCTACAGCACATCTTTTTCTGAAGTCATTCTGTGGTGTAACACTCCCCTAGCACGTGTTTGGTACCAAAGTCTTCTAAAGCACTAAACCTTCATTTTGCTAAACGTGTAAGCAATGTTGGCCCTCTCAACATAGATGTGCTTTACATAATGCTGACGTTGGTGTTTGCTGTAATCTGTTGGGATCATATGTTCGTAAATAGATGTGTAGGTTCTGAGTATCTCAATTCTGTTTCATTGTGGTAGTCTTTTTAGAACAGTTTCAAAGTTTATTCAGAATAAACTGTTTGGTTTTAATTCAATTGTTTGATGCCAAATCTTGGCAGGAATGGGAACACAAGTGCACTATAAAGGATTCCGACCAAGCTATTACTCTATGAGGGACCTTAATGAGGATTGTAACAGCAGCAGTTGGACCCCATCTTATGGAGATAAGACATTACCAAACAGCCAATATTGTAATGGTTTCACCCCGAGGACTACAACTAATGCATATCCAGGGTATGATAAGGACATTCTAAAGCAGAGAATGCTTGAACACGAAGCCATATTCAGGAATCAGGTAACGCTTCCCTTCCTTTTTCTTTTCTTTAAATTTTTGAGGGGTTAGTTGGAAATTTTGGTTTTCAGTATGGTTCTACATATCCTAATGCCGTAGTCTCTTAAACTCTCCTGCTTCAAAATCTCTTCGCCTGTCATGCATTCCTTTTTTTGCCTTGTGTCAATGGCGTTTCAAATATACTTATGCAATGGTTTGCTTGTAGGTGGTGGAACTTCATCGCCTTTACAGAACTCAAAGGGACATGATGGATGAATTTAAAAGGAAGGAAATGCATAAATATCGCGCATCAATGGAGCCA</genome_strand>
        <mrna_strand>CCTTTTGAGGACTTGTGTCTTTCTCTCTCTTCTTCTTGATTTTCTCTTCTCTCTCT-AAAAAAAAAAAGAGTTTTCTTTTTCTTTGTTTCTGAGAAGTTGTGGCCCCAGCAGATCGAAATCTCCAATCTTTTTTCAGTTTGATGAGGATCTGAGCTTCTTCAATGGTGTTAGCAGACTACCCACTTTGTTCTTTTCTTCAAATTCTTTCTTAAATTATTATTACTATACATCATGTAAAATGGGAGAGAGTAGTTATTATTATTATACTACTATTTATTACTTTGTCTTCTTTTGTTCCTCTGCTTCTTCTTTTTTGGGGGTCACTCAATTCTCCACATGATTCTTGAATTGCTGCTGCTGCAAGTGTTGTTCAATCCATGAAAAAGGGTGTTGAGAACAAGTGTTTACAAGATGAGGGGTTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGGAACACAAGTGCACTATAAAGGATTCCGACCAAGCTATTACTCTATGAGGGACCTTAATGAGGATTGTAACAGCAGCAGTTGGACCCCATCTTATGGAGATAAGACATTACCAAACAGCCAATATTGTAATGGTTTCACCCCGAGGACTACAACTAATGCATATCCAGGGTATGATAAGGACATTCTAAAGCAGAGAATGCTTGAACACGAAGCCATATTCAGGAATCAG..........................................................................................................................................................................................................GGGGTGGAACTTCATCGCCTTTACAGAACTCAAAGGGACATGATGGATGAATTTAAAAGGAAGGAAATGCATAAATATCGCGCATCAATGGAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229872" ref_strand="+" ref_description="SGN-E229872 [cLEL-33-C14](-)">
      <seq>aaggtcacaagccacgttaatgtcgatcaccatagtcctcctctcttgtttgatagtctttctctcaggaaaagaccaaagattagcagaaggaaaaacaagtgatgncgacgacccgtttctggaactaacgggaatatcgaggatcggaacaccaagtatttttcttacatgtcccgtttcgcccacttcttttgtggtcctcatacggtgatgttcaaaagctgatgaatcactctgacaaaaaggagggtttgagtaagcctggacaaagccagaatttgctgaagttccacctaacctagcattgatgccctcattgttaccatttgctttacctttaagccatggcaacactgtcacagggtcttgatgctctcttttttcattaccatactcaacatctcgcctgggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="104359" stop="105375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104659" g_stop="105075" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-E229872" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104659" e_stop="105075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTCACAAGCCACGTTAATGTCGATCACCATAGTCCTCCTCTCTTGTTTGATAGTCTTTCTCTCAGGAGAAGAACGAAGATTAGCAGAAGGAAAAACAAGTGATGACGACGACCCGTTTCTGGAACTAACGGGAATATCGAGGATCGGAACACCAAGTATTTTTCTTACATGTCCCGTTTCGCCCACTTCTTTTGTGGTCCTCATACGGTGATGTTCAAAAGCTGATGAATCACTCTGACAAAAAGGAGGGTTTGAGTAAGCCTGGACAAAGCCAGAATTTGCTGAAGTTCCACCTAACCTAGCATTGATGCCCTCATTGTTACCATTTGCTTTACCTTTAAGCCATGGCAACACTGTCACAGGGTCTTGATGCTCTCTTTTTTCATTACCATACTCAACATCTCGCCTGGGAGG</genome_strand>
        <mrna_strand>AAGGTCACAAGCCACGTTAATGTCGATCACCATAGTCCTCCTCTCTTGTTTGATAGTCTTTCTCTCAGGAAAAGACCAAAGATTAGCAGAAGGAAAAACAAGTGATGNCGACGACCCGTTTCTGGAACTAACGGGAATATCGAGGATCGGAACACCAAGTATTTTTCTTACATGTCCCGTTTCGCCCACTTCTTTTGTGGTCCTCATACGGTGATGTTCAAAAGCTGATGAATCACTCTGACAAAAAGGAGGGTTTGAGTAAGCCTGGACAAAGCCAGAATTTGCTGAAGTTCCACCTAACCTAGCATTGATGCCCTCATTGTTACCATTTGCTTTACCTTTAAGCCATGGCAACACTGTCACAGGGTCTTGATGCTCTCTTTTTTCATTACCATACTCAACATCTCGCCTGGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249865" ref_strand="+" ref_description="SGN-E249865 [cLEF-57-F13]">
      <seq>cagttctaggttgcgtcctggatgtgccggtgagatacccatccggagtggtttctaccgtgggtcctcatctgggacaaaagaatcaccaattcacatcccatcaggtgcttttgactctttgagctacattaagggggaccgttttacatctgaacgttcctctaataatgcatgtgagaattttcttattagctctaacaatatggatgtgaaatctgcgaagggcttcaacttaaatgttctagcaacaagtgcactcagcgaggaacctcccaggcgagatgttgagtatggtaatgaaaaaagagagcatcaagaccctgtgacagtgttgccatggcttaaaggtaaagcaaatggtaacaatgagggcatcaatgctaggttaggtggaacttcagcaaattctggctttgtccaggcttactcaaaccctcctttttgtcagagtgattcatcagcttttgaacatcaccgtatgaggaccacaaaagaagtgggcgaaacgggacatgtaagaaaaatacttggtgttccgatcctcgatattcccgttagttccagaaacgggtcgtcgtcatcacttgtttttccttctgctaatcttcgttcttctcctgagagaaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="105646" stop="104414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105346" g_stop="104714" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E249865" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105346" e_stop="104714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTCTAGGTTGCGTCCTGGATGTGCCGGTGAGATACCCATCCGGAGTGGTTTCTACCGTGGGTCCTCATCTGGGACAAAAGAATCACCAATTCACATCCCATCAGGTGCTTTTGACTCTTTGAGCTACATTAAGGGGGACCGTTTTACATCTGAACGTTCCTCTAATAATGCATGTGAGAATTTTCTTATTAGCTCTAACAATATGGATGTGAAATCTGCGAAGGGCTTCAACTTAAATGTTCTAGCAACAAGTGCACTCAGCGAGGAACCTCCCAGGCGAGATGTTGAGTATGGTAATGAAAAAAGAGAGCATCAAGACCCTGTGACAGTGTTGCCATGGCTTAAAGGTAAAGCAAATGGTAACAATGAGGGCATCAATGCTAGGTTAGGTGGAACTTCAGCAAATTCTGGCTTTGTCCAGGCTTACTCAAACCCTCCTTTTTGTCAGAGTGATTCATCAGCTTTTGAACATCACCGTATGAGGACCACAAAAGAAGTGGGCGAAACGGGACATGTAAGAAAAATACTTGGTGTTCCGATCCTCGATATTCCCGTTAGTTCCAGAAACGGGTCGTCGTCATCACTTGTTTTTCCTTCTGCTAATCTTCGTTCTTCTCCTGAGAGAAAGAC</genome_strand>
        <mrna_strand>CAGTTCTAGGTTGCGTCCTGGATGTGCCGGTGAGATACCCATCCGGAGTGGTTTCTACCGTGGGTCCTCATCTGGGACAAAAGAATCACCAATTCACATCCCATCAGGTGCTTTTGACTCTTTGAGCTACATTAAGGGGGACCGTTTTACATCTGAACGTTCCTCTAATAATGCATGTGAGAATTTTCTTATTAGCTCTAACAATATGGATGTGAAATCTGCGAAGGGCTTCAACTTAAATGTTCTAGCAACAAGTGCACTCAGCGAGGAACCTCCCAGGCGAGATGTTGAGTATGGTAATGAAAAAAGAGAGCATCAAGACCCTGTGACAGTGTTGCCATGGCTTAAAGGTAAAGCAAATGGTAACAATGAGGGCATCAATGCTAGGTTAGGTGGAACTTCAGCAAATTCTGGCTTTGTCCAGGCTTACTCAAACCCTCCTTTTTGTCAGAGTGATTCATCAGCTTTTGAACATCACCGTATGAGGACCACAAAAGAAGTGGGCGAAACGGGACATGTAAGAAAAATACTTGGTGTTCCGATCCTCGATATTCCCGTTAGTTCCAGAAACGGGTCGTCGTCATCACTTGTTTTTCCTTCTGCTAATCTTCGTTCTTCTCCTGAGAGAAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710952" ref_strand="+" ref_description="SGN-E710952 [FA57CA08]">
      <seq>ctcttcttgggagaagccaaatggtagctttgctcagaggttatcctcgttgcatacaaactcagttttcaactcatctgcagcagttggtaagggttcacagtcatctcagagccaaattggggactattggcatgctaatggtggcagttctaggttgcgtcctggatgtgccggtgagatacccatccggagtggtttctaccgtgggtcctcatctgggacaaaagaatcaccaattcacatcccatcaggtgcttttgactctttgagctacattaaggggggccgttttacatctgaacgttcctctaataatgcatgtgagaattttcttattagctctaacaatatggatgtgaaatctgcgaagggcttcaacttaaatgttctagcaacaagtgcactcagcgaggaacctcccaggcgagatgttgagtatggtaatgaaaaaagagagcatcaagaccctgtgacagtgttgccatggcttaaaggtaaagcaaatggtaacaatgagggcatcaatgctaggttaggtggaacttcagcaaattctggctttgtccaggcttactcaagccctcctttttgtcagagtgattcatcagcttttgaacatcaccgtatgaggaccacaaaagaagtgggcgaaacgggacatgtaagaaaaatacttggtgttccgatcctcgatattcccgttagttccagaaacgagtcgtcgtcatcacttgtttttccttctgctaatcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="-" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="105793" stop="104437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105493" g_stop="104736" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="758" r_length="758" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="-" ref_id="SGN-E710952" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105493" e_stop="104736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTTGGGAGAAGCCAAATGGTAGCTTTGCTCAGAGGTTATCCTCGTTGCATACAAACTCAGTTTTCAACTCATCTGCAGCAGTTGGTAAGGGTTCACAGTCATCTCAGAGCCAAATTGGGGACTATTGGCATGCTAATGGTGGCAGTTCTAGGTTGCGTCCTGGATGTGCCGGTGAGATACCCATCCGGAGTGGTTTCTACCGTGGGTCCTCATCTGGGACAAAAGAATCACCAATTCACATCCCATCAGGTGCTTTTGACTCTTTGAGCTACATTAAGGGGGACCGTTTTACATCTGAACGTTCCTCTAATAATGCATGTGAGAATTTTCTTATTAGCTCTAACAATATGGATGTGAAATCTGCGAAGGGCTTCAACTTAAATGTTCTAGCAACAAGTGCACTCAGCGAGGAACCTCCCAGGCGAGATGTTGAGTATGGTAATGAAAAAAGAGAGCATCAAGACCCTGTGACAGTGTTGCCATGGCTTAAAGGTAAAGCAAATGGTAACAATGAGGGCATCAATGCTAGGTTAGGTGGAACTTCAGCAAATTCTGGCTTTGTCCAGGCTTACTCAAACCCTCCTTTTTGTCAGAGTGATTCATCAGCTTTTGAACATCACCGTATGAGGACCACAAAAGAAGTGGGCGAAACGGGACATGTAAGAAAAATACTTGGTGTTCCGATCCTCGATATTCCCGTTAGTTCCAGAAACGGGTCGTCGTCATCACTTGTTTTTCCTTCTGCTAATCTTC</genome_strand>
        <mrna_strand>CTCTTCTTGGGAGAAGCCAAATGGTAGCTTTGCTCAGAGGTTATCCTCGTTGCATACAAACTCAGTTTTCAACTCATCTGCAGCAGTTGGTAAGGGTTCACAGTCATCTCAGAGCCAAATTGGGGACTATTGGCATGCTAATGGTGGCAGTTCTAGGTTGCGTCCTGGATGTGCCGGTGAGATACCCATCCGGAGTGGTTTCTACCGTGGGTCCTCATCTGGGACAAAAGAATCACCAATTCACATCCCATCAGGTGCTTTTGACTCTTTGAGCTACATTAAGGGGGGCCGTTTTACATCTGAACGTTCCTCTAATAATGCATGTGAGAATTTTCTTATTAGCTCTAACAATATGGATGTGAAATCTGCGAAGGGCTTCAACTTAAATGTTCTAGCAACAAGTGCACTCAGCGAGGAACCTCCCAGGCGAGATGTTGAGTATGGTAATGAAAAAAGAGAGCATCAAGACCCTGTGACAGTGTTGCCATGGCTTAAAGGTAAAGCAAATGGTAACAATGAGGGCATCAATGCTAGGTTAGGTGGAACTTCAGCAAATTCTGGCTTTGTCCAGGCTTACTCAAGCCCTCCTTTTTGTCAGAGTGATTCATCAGCTTTTGAACATCACCGTATGAGGACCACAAAAGAAGTGGGCGAAACGGGACATGTAAGAAAAATACTTGGTGTTCCGATCCTCGATATTCCCGTTAGTTCCAGAAACGAGTCGTCGTCATCACTTGTTTTTCCTTCTGCTAATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>122</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4757" PGL_stop="1437"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4757" e_stop="4186"/>
            <exon e_start="2683" e_stop="2540"/>
            <exon e_start="1964" e_stop="1437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="0.542" e_score="0.998"/>
          <exon-intron don_prob="0.998" acc_prob="0.499" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="4757" e_stop="4186" e_length="572"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="0.542">
            <gDNA_intron_boundary i_start="4185" i_stop="2684" i_length="1502"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2683" e_stop="2540" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.499">
            <gDNA_intron_boundary i_start="2539" i_stop="1965" i_length="575"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="1964" e_stop="1437" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4757" stop="4265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4657" stop="4186"/>
              <exon start="2683" stop="2540"/>
              <exon start="1964" stop="1437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746054" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAAATCCCCCAAAAAAGTTTCTAATTAAATATTCCAAACTCTTTACGCGTTTATCTTCTCCTTCTCTATAAACCCTAGCTTCAATTTTTTCTCTCTCCGCGTAAAATTCACTCTGTAACTATGGATGAAAACGATAAGCAGGTTGATAATGATCCATTACCTGGTGGTGGTGGTGGTGGTGCAGCGGAGTTCACCGGCGCTACTACTGAATCAAGCTGGTCACTCGGTGGTGGAGATGATGAATCGGATAATGTTTACTTCTTCGGTACTAGTAGTACTGATAGAGAGAGCAGTATATTAACCGAATTCGGCTGGAATTTTCAACCGCACGGAAATAGAGATGTTCGCGCCGGTGGTGACGGTAGTCGATTTGATCGGATCGATGAGGATTTGGCGGGAAATAGTACTACAACTACTGCTTCTGTTTCTGCTTCTGTTTCTATTACTGAACCGACGGTGACGGAGAAAATCACCGACGAACCTGTTTCATCTAGCTGTTCTGATGATCCCCCGGAGAAATCTACAGCTTCCGGTAGCTCCTCCGCCTCTCGACCGCCGTCCGATACAGC : AAGCAAGGTTAAAAAGAAGGGTCAGAAACGAATCAGGCAGCCCCGCTTTGCATTTATGACCAAAAGTGAAGTTGATCATCTTGAAGATGGCTATAGATGGAGGAAATATGGCCAAAAAGCTGTTAAAAACAGTCCATTTCCAAG : GAGTTATTATCGTTGTACAAATACAAAGTGTACAGTAAAGAAAAGAGTGGAGAGATCCTCTGAAGATTCCTCAATTGTAATCACAACATATGAAGGACAACATTGTCACCATACAGTTGGATTTCCTAGAGGTGGACTTATCAATCACGAAGCATTTACATCTCAATTAACACCTTTACCCTCACAATTCTATCATCCATCCGGTGTTCAATACCCTCATGAATTAGTTCCTATGAGTAGCCCCGCTGCACCAGAATCACATACAATGCCTGGTGAAACCGGACCCGAACCTATTAGATTGCCAGAAACAAGTCAACCAGATGCTACACAACAACCAACTGATGAAGGATTGCTTGGAGATATTGTACCTCCTGGGATGCGAAGCAGATAATATAAAGGGTAATATATTCCGTTTCTTAATTTGCATTAATTTACATATATTTTTTTATTTCATCAATGACATAGTATTTGAACGTTACACGAGTGCGCCTACACAAGTGTAAGTGTATGTGTTTTATTTAAAAAGAA</gDNA_template>
            <first_frame> F  Q  I  P  Q  K  S  F  *  L  N  I  P  N  S  L  R  V  Y  L  L  L  L  Y  K  P  *  L  Q  F  F  L  S  P  R  K  I  H  S  V  T  M  D  E  N  D  K  Q  V  D  N  D  P  L  P  G  G  G  G  G  G  A  A  E  F  T  G  A  T  T  E  S  S  W  S  L  G  G  G  D  D  E  S  D  N  V  Y  F  F  G  T  S  S  T  D  R  E  S  S  I  L  T  E  F  G  W  N  F  Q  P  H  G  N  R  D  V  R  A  G  G  D  G  S  R  F  D  R  I  D  E  D  L  A  G  N  S  T  T  T  T  A  S  V  S  A  S  V  S  I  T  E  P  T  V  T  E  K  I  T  D  E  P  V  S  S  S  C  S  D  D  P  P  E  K  S  T  A  S  G  S  S  S  A  S  R  P  P  S  D  T  A :   S  K  V  K  K  K  G  Q  K  R  I  R  Q  P  R  F  A  F  M  T  K  S  E  V  D  H  L  E  D  G  Y  R  W  R  K  Y  G  Q  K  A  V  K  N  S  P  F  P  R :   S  Y  Y  R  C  T  N  T  K  C  T  V  K  K  R  V  E  R  S  S  E  D  S  S  I  V  I  T  T  Y  E  G  Q  H  C  H  H  T  V  G  F  P  R  G  G  L  I  N  H  E  A  F  T  S  Q  L  T  P  L  P  S  Q  F  Y  H  P  S  G  V  Q  Y  P  H  E  L  V  P  M  S  S  P  A  A  P  E  S  H  T  M  P  G  E  T  G  P  E  P  I  R  L  P  E  T  S  Q  P  D  A  T  Q  Q  P  T  D  E  G  L  L  G  D  I  V  P  P  G  M  R  S  R  *  Y  K  G  *  Y  I  P  F  L  N  L  H  *  F  T  Y  I  F  L  F  H  Q  *  H  S  I  *  T  L  H  E  C  A  Y  T  S  V  S  V  C  V  L  F  K  K   </first_frame>
            <second_frame>  F  K  S  P  K  K  V  S  N  *  I  F  Q  T  L  Y  A  F  I  F  S  F  S  I  N  P  S  F  N  F  F  S  L  R  V  K  F  T  L  *  L  W  M  K  T  I  S  R  L  I  M  I  H  Y  L  V  V  V  V  V  V  Q  R  S  S  P  A  L  L  L  N  Q  A  G  H  S  V  V  E  M  M  N  R  I  M  F  T  S  S  V  L  V  V  L  I  E  R  A  V  Y  *  P  N  S  A  G  I  F  N  R  T  E  I  E  M  F  A  P  V  V  T  V  V  D  L  I  G  S  M  R  I  W  R  E  I  V  L  Q  L  L  L  L  F  L  L  L  F  L  L  L  N  R  R  *  R  R  K  S  P  T  N  L  F  H  L  A  V  L  M  I  P  R  R  N  L  Q  L  P  V  A  P  P  P  L  D  R  R  P  I  Q   : Q  A  R  L  K  R  R  V  R  N  E  S  G  S  P  A  L  H  L  *  P  K  V  K  L  I  I  L  K  M  A  I  D  G  G  N  M  A  K  K  L  L  K  T  V  H  F  Q   : G  V  I  I  V  V  Q  I  Q  S  V  Q  *  R  K  E  W  R  D  P  L  K  I  P  Q  L  *  S  Q  H  M  K  D  N  I  V  T  I  Q  L  D  F  L  E  V  D  L  S  I  T  K  H  L  H  L  N  *  H  L  Y  P  H  N  S  I  I  H  P  V  F  N  T  L  M  N  *  F  L  *  V  A  P  L  H  Q  N  H  I  Q  C  L  V  K  P  D  P  N  L  L  D  C  Q  K  Q  V  N  Q  M  L  H  N  N  Q  L  M  K  D  C  L  E  I  L  Y  L  L  G  C  E  A  D  N  I  K  G  N  I  F  R  F  L  I  C  I  N  L  H  I  F  F  Y  F  I  N  D  I  V  F  E  R  Y  T  S  A  P  T  Q  V  *  V  Y  V  F  Y  L  K  R  </second_frame>
            <third_frame>   S  N  P  P  K  K  F  L  I  K  Y  S  K  L  F  T  R  L  S  S  P  S  L  *  T  L  A  S  I  F  S  L  S  A  *  N  S  L  C  N  Y  G  *  K  R  *  A  G  *  *  *  S  I  T  W  W  W  W  W  W  C  S  G  V  H  R  R  Y  Y  *  I  K  L  V  T  R  W  W  R  *  *  I  G  *  C  L  L  L  R  Y  *  *  Y  *  *  R  E  Q  Y  I  N  R  I  R  L  E  F  S  T  A  R  K  *  R  C  S  R  R  W  *  R  *  S  I  *  S  D  R  *  G  F  G  G  K  *  Y  Y  N  Y  C  F  C  F  C  F  C  F  Y  Y  *  T  D  G  D  G  E  N  H  R  R  T  C  F  I  *  L  F  *  *  S  P  G  E  I  Y  S  F  R  *  L  L  R  L  S  T  A  V  R  Y  S  :  K  Q  G  *  K  E  G  S  E  T  N  Q  A  A  P  L  C  I  Y  D  Q  K  *  S  *  S  S  *  R  W  L  *  M  E  E  I  W  P  K  S  C  *  K  Q  S  I  S  K  :  E  L  L  S  L  Y  K  Y  K  V  Y  S  K  E  K  S  G  E  I  L  *  R  F  L  N  C  N  H  N  I  *  R  T  T  L  S  P  Y  S  W  I  S  *  R  W  T  Y  Q  S  R  S  I  Y  I  S  I  N  T  F  T  L  T  I  L  S  S  I  R  C  S  I  P  S  *  I  S  S  Y  E  *  P  R  C  T  R  I  T  Y  N  A  W  *  N  R  T  R  T  Y  *  I  A  R  N  K  S  T  R  C  Y  T  T  T  N  *  *  R  I  A  W  R  Y  C  T  S  W  D  A  K  Q  I  I  *  R  V  I  Y  S  V  S  *  F  A  L  I  Y  I  Y  F  F  I  S  S  M  T  *  Y  L  N  V  T  R  V  R  L  H  K  C  K  C  M  C  F  I  *  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4676" stop="4186"/>
                    <exon start="2683" stop="2540"/>
                    <exon start="1964" stop="1574"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1023</number_coding_nucleotides>
                  <number_encoded_amino_acids>341</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQFFLSPRKIHSVTMDENDKQVDNDPLPGGGGGGAAEFTGATTESSWSLGGGDDESDNVYFFGTSSTDRESSILTEFGWNFQPHGNRDVRAGGDGSRFDRIDEDLAGNSTTTTASVSASVSITEPTVTEKITDEPVSSSCSDDPPEKSTASGSSSASRPPSDTASKVKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNTKCTVKKRVERSSEDSSIVITTYEGQHCHHTVGFPRGGLINHEAFTSQLTPLPSQFYHPSGVQYPHELVPMSSPAAPESHTMPGETGPEPIRLPETSQPDATQQPTDEGLLGDIVPPGMRSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="23665" PGL_stop="20371"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23424" e_stop="23307"/>
            <exon e_start="23126" e_stop="22735"/>
            <exon e_start="22636" e_stop="22484"/>
            <exon e_start="22176" e_stop="21811"/>
            <exon e_start="21681" e_stop="21605"/>
            <exon e_start="21510" e_stop="21324"/>
            <exon e_start="21010" e_stop="20810"/>
            <exon e_start="20655" e_stop="20371"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.553" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.949" e_score="0.997"/>
          <exon-intron don_prob="0.983" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.962" e_score="0.995"/>
          <exon-intron don_prob="0.998" acc_prob="0.947" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23424" e_stop="23307" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.553">
            <gDNA_intron_boundary i_start="23306" i_stop="23127" i_length="180"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23126" e_stop="22735" e_length="392"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.991">
            <gDNA_intron_boundary i_start="22734" i_stop="22637" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22636" e_stop="22484" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="0.909" acc_prob="0.989">
            <gDNA_intron_boundary i_start="22483" i_stop="22177" i_length="307"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="22176" e_stop="21811" e_length="366"/>
          </exon>
          <intron i_serial="4" don_prob="0.942" acc_prob="0.949">
            <gDNA_intron_boundary i_start="21810" i_stop="21682" i_length="129"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21681" e_stop="21605" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.951">
            <gDNA_intron_boundary i_start="21604" i_stop="21511" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="21510" e_stop="21324" e_length="187"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.962">
            <gDNA_intron_boundary i_start="21323" i_stop="21011" i_length="313"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="21010" e_stop="20810" e_length="201"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.947">
            <gDNA_intron_boundary i_start="20809" i_stop="20656" i_length="154"/>
          </intron>
          <exon e_serial="8" e_score="0.993">
            <gDNA_exon_boundary e_start="20655" e_stop="20371" e_length="285"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23424" stop="23307"/>
              <exon start="23126" stop="22735"/>
              <exon start="22636" stop="22484"/>
              <exon start="22176" stop="22116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23424" stop="23307"/>
              <exon start="23126" stop="22735"/>
              <exon start="22636" stop="22484"/>
              <exon start="22176" stop="22127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22590" stop="22484"/>
              <exon start="22176" stop="21811"/>
              <exon start="21681" stop="21641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21655" stop="21605"/>
              <exon start="21510" stop="21324"/>
              <exon start="21010" stop="20810"/>
              <exon start="20655" stop="20375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578349" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20913" stop="20810"/>
              <exon start="20655" stop="20371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374254" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACGGTCGCATACACTAACCACACTGTTTTACCCGAGGCTCTAGAGAAATGGAGCTTCACACTTCTTGGTGAACTGCTTCCTCGGCACGTGGAGATCATAGCAATGATAGATGAGGAG : ATCTTGACTTGTTGCAAGAAAAGCTAAACCAAATGAGGATTCTGGATAATGTTGAAATACCTACTTCTGTTTTGGAGTTACTTATCAAAGCCGAAGAAAATGCTGCTGATGTCGAAAAAGCAGCAGAAGAAGAACAACTAGAAGAAGGTAAAGATGAGGAAACTGAGGCTGTAAAAGCAGAAACTACGAACGTAGAGGAGGAAACTGAGGTTGAGAAGGTTGAGGTCAAGGATAGTCAAGCAAAAATAAAACGGATATTCGGGCCACATGCAAATAGACCACAGGTGGTTCACATGGCAAATCTATGTGTAGTTAGTGGTCATGCAGTTAACGGTGTTGCTGAGATTCATAGTGAAATAGTTAAAGATGAAGTTTTCAATGAATTTTACAAG : TTATGGCCAGAGAAATTCCAAAACAAGACAAATGGTGTGACACCAAGAAGATGGTTAAGTTTCTGTAACCCAGAGTTGAGTGAAATTATAACCAAATGGACAGGATCTGATGATTGGTTGGTAAACACTGAAAAATTGGCAGAGCTTCGAAAG : TTTGCTGATAACGAAGAACTCCAGTCTGAGTGGAGGAAGGCAAAAGGAAATAACAAAATGAAGATTGTCTCTCTCATTAAAGAAAAAACAGGATACGTGGTCAGTCCCGATGCGATGTTTGATGTTCAGATCAAGCGCATTCACGAGTATAAGAGGCAGCTATTAAATATATTCGGCATTGTTTATCGCTACAAGAAGATGAAAGAAATGAGCCCTGAAGAACGAAAAGAAAAGTTTGTTCCTCGAGTTTGCATATTTGGAGGAAAAGCATTTGCTACATATGTTCAGGCCAAGAGAATTGTAAAATTTATCACTGATGTAGGGGCAACAGTCAACCATGATCCCGAGATTGGTGATCTTTTGAAG : GTTGTCTTTGTTCCTGATTACAACGTCAGTGTAGCGGAAGTGCTAATTCCTGGTAGTGAGCTGTCCCAGCACATTAG : TACTGCTGGTATGGAGGCTAGTGGAACCAGCAACATGAAATTTTCAATGAATGGCTGCCTCCTTATCGGAACGTTAGATGGTGCCAATGTTGAGATAAGAGAGGAAGTTGGAGAGGACAATTTCTTCCTTTTCGGAGCTCAGGCTCATGAAATTGCTGGTCTGCGAAAGGAAAGAGCCGAGGGAAAG : TTTATCCCCGACCCAAGATTTGAAGAAGTAAAGGCGTTCATTAGGACAGGCGTCTTTGGCCCCTACAACTATGAAGAACTCATGGGATCCTTAGAAGGAAACGAAGGCTTTGGTCGTGCTGACTATTTTCTTGTAGGAAAAGATTTCCCTGATTATATAGAGTGCCAAGATAAAGTTGATGAAGCATATCGAGACCAGAAG : AAATGGACCAAAATGTCGATCTTAAACACAGCTGGATCGTTCAAATTTAGCAGTGATCGAACAATTCATCAATATGCAAGAGACATATGGAGAATTGAACCTGTTGAATTACCTTAAATGTTAAGCCAGTTAAAGGGTGAAGCCAATTTTTTCTCCCTGAGGTTCTCCCATACCATTATAATTAGTAAATCTTGTCAAGAGTTGCTACTGAAATGTTACAAGTTTTGAATATTTATTGTCGATTATATATATTTGAAAATAATGAAGTTTGTTTTGAACAACAAC</gDNA_template>
            <first_frame> N  G  R  I  H  *  P  H  C  F  T  R  G  S  R  E  M  E  L  H  T  S  W  *  T  A  S  S  A  R  G  D  H  S  N  D  R  *  G   : D  L  D  L  L  Q  E  K  L  N  Q  M  R  I  L  D  N  V  E  I  P  T  S  V  L  E  L  L  I  K  A  E  E  N  A  A  D  V  E  K  A  A  E  E  E  Q  L  E  E  G  K  D  E  E  T  E  A  V  K  A  E  T  T  N  V  E  E  E  T  E  V  E  K  V  E  V  K  D  S  Q  A  K  I  K  R  I  F  G  P  H  A  N  R  P  Q  V  V  H  M  A  N  L  C  V  V  S  G  H  A  V  N  G  V  A  E  I  H  S  E  I  V  K  D  E  V  F  N  E  F  Y  K  :  L  W  P  E  K  F  Q  N  K  T  N  G  V  T  P  R  R  W  L  S  F  C  N  P  E  L  S  E  I  I  T  K  W  T  G  S  D  D  W  L  V  N  T  E  K  L  A  E  L  R  K  :  F  A  D  N  E  E  L  Q  S  E  W  R  K  A  K  G  N  N  K  M  K  I  V  S  L  I  K  E  K  T  G  Y  V  V  S  P  D  A  M  F  D  V  Q  I  K  R  I  H  E  Y  K  R  Q  L  L  N  I  F  G  I  V  Y  R  Y  K  K  M  K  E  M  S  P  E  E  R  K  E  K  F  V  P  R  V  C  I  F  G  G  K  A  F  A  T  Y  V  Q  A  K  R  I  V  K  F  I  T  D  V  G  A  T  V  N  H  D  P  E  I  G  D  L  L  K  :  V  V  F  V  P  D  Y  N  V  S  V  A  E  V  L  I  P  G  S  E  L  S  Q  H  I  S :   T  A  G  M  E  A  S  G  T  S  N  M  K  F  S  M  N  G  C  L  L  I  G  T  L  D  G  A  N  V  E  I  R  E  E  V  G  E  D  N  F  F  L  F  G  A  Q  A  H  E  I  A  G  L  R  K  E  R  A  E  G  K  :  F  I  P  D  P  R  F  E  E  V  K  A  F  I  R  T  G  V  F  G  P  Y  N  Y  E  E  L  M  G  S  L  E  G  N  E  G  F  G  R  A  D  Y  F  L  V  G  K  D  F  P  D  Y  I  E  C  Q  D  K  V  D  E  A  Y  R  D  Q  K  :  K  W  T  K  M  S  I  L  N  T  A  G  S  F  K  F  S  S  D  R  T  I  H  Q  Y  A  R  D  I  W  R  I  E  P  V  E  L  P  *  M  L  S  Q  L  K  G  E  A  N  F  F  S  L  R  F  S  H  T  I  I  I  S  K  S  C  Q  E  L  L  L  K  C  Y  K  F  *  I  F  I  V  D  Y  I  Y  L  K  I  M  K  F  V  L  N  N  N </first_frame>
            <second_frame>  T  V  A  Y  T  N  H  T  V  L  P  E  A  L  E  K  W  S  F  T  L  L  G  E  L  L  P  R  H  V  E  I  I  A  M  I  D  E  E  :  I  L  T  C  C  K  K  S  *  T  K  *  G  F  W  I  M  L  K  Y  L  L  L  F  W  S  Y  L  S  K  P  K  K  M  L  L  M  S  K  K  Q  Q  K  K  N  N  *  K  K  V  K  M  R  K  L  R  L  *  K  Q  K  L  R  T  *  R  R  K  L  R  L  R  R  L  R  S  R  I  V  K  Q  K  *  N  G  Y  S  G  H  M  Q  I  D  H  R  W  F  T  W  Q  I  Y  V  *  L  V  V  M  Q  L  T  V  L  L  R  F  I  V  K  *  L  K  M  K  F  S  M  N  F  T  S :   Y  G  Q  R  N  S  K  T  R  Q  M  V  *  H  Q  E  D  G  *  V  S  V  T  Q  S  *  V  K  L  *  P  N  G  Q  D  L  M  I  G  W  *  T  L  K  N  W  Q  S  F  E  S :   L  L  I  T  K  N  S  S  L  S  G  G  R  Q  K  E  I  T  K  *  R  L  S  L  S  L  K  K  K  Q  D  T  W  S  V  P  M  R  C  L  M  F  R  S  S  A  F  T  S  I  R  G  S  Y  *  I  Y  S  A  L  F  I  A  T  R  R  *  K  K  *  A  L  K  N  E  K  K  S  L  F  L  E  F  A  Y  L  E  E  K  H  L  L  H  M  F  R  P  R  E  L  *  N  L  S  L  M  *  G  Q  Q  S  T  M  I  P  R  L  V  I  F  *  R :   L  S  L  F  L  I  T  T  S  V  *  R  K  C  *  F  L  V  V  S  C  P  S  T  L   : V  L  L  V  W  R  L  V  E  P  A  T  *  N  F  Q  *  M  A  A  S  L  S  E  R  *  M  V  P  M  L  R  *  E  R  K  L  E  R  T  I  S  S  F  S  E  L  R  L  M  K  L  L  V  C  E  R  K  E  P  R  E  S :   L  S  P  T  Q  D  L  K  K  *  R  R  S  L  G  Q  A  S  L  A  P  T  T  M  K  N  S  W  D  P  *  K  E  T  K  A  L  V  V  L  T  I  F  L  *  E  K  I  S  L  I  I  *  S  A  K  I  K  L  M  K  H  I  E  T  R  R :   N  G  P  K  C  R  S  *  T  Q  L  D  R  S  N  L  A  V  I  E  Q  F  I  N  M  Q  E  T  Y  G  E  L  N  L  L  N  Y  L  K  C  *  A  S  *  R  V  K  P  I  F  S  P  *  G  S  P  I  P  L  *  L  V  N  L  V  K  S  C  Y  *  N  V  T  S  F  E  Y  L  L  S  I  I  Y  I  *  K  *  *  S  L  F  *  T  T   </second_frame>
            <third_frame>   R  S  H  T  L  T  T  L  F  Y  P  R  L  *  R  N  G  A  S  H  F  L  V  N  C  F  L  G  T  W  R  S  *  Q  *  *  M  R  R :   S  *  L  V  A  R  K  A  K  P  N  E  D  S  G  *  C  *  N  T  Y  F  C  F  G  V  T  Y  Q  S  R  R  K  C  C  *  C  R  K  S  S  R  R  R  T  T  R  R  R  *  R  *  G  N  *  G  C  K  S  R  N  Y  E  R  R  G  G  N  *  G  *  E  G  *  G  Q  G  *  S  S  K  N  K  T  D  I  R  A  T  C  K  *  T  T  G  G  S  H  G  K  S  M  C  S  *  W  S  C  S  *  R  C  C  *  D  S  *  *  N  S  *  R  *  S  F  Q  *  I  L  Q   : V  M  A  R  E  I  P  K  Q  D  K  W  C  D  T  K  K  M  V  K  F  L  *  P  R  V  E  *  N  Y  N  Q  M  D  R  I  *  *  L  V  G  K  H  *  K  I  G  R  A  S  K   : V  C  *  *  R  R  T  P  V  *  V  E  E  G  K  R  K  *  Q  N  E  D  C  L  S  H  *  R  K  N  R  I  R  G  Q  S  R  C  D  V  *  C  S  D  Q  A  H  S  R  V  *  E  A  A  I  K  Y  I  R  H  C  L  S  L  Q  E  D  E  R  N  E  P  *  R  T  K  R  K  V  C  S  S  S  L  H  I  W  R  K  S  I  C  Y  I  C  S  G  Q  E  N  C  K  I  Y  H  *  C  R  G  N  S  Q  P  *  S  R  D  W  *  S  F  E   : G  C  L  C  S  *  L  Q  R  Q  C  S  G  S  A  N  S  W  *  *  A  V  P  A  H  *  :  Y  C  W  Y  G  G  *  W  N  Q  Q  H  E  I  F  N  E  W  L  P  P  Y  R  N  V  R  W  C  Q  C  *  D  K  R  G  S  W  R  G  Q  F  L  P  F  R  S  S  G  S  *  N  C  W  S  A  K  G  K  S  R  G  K   : V  Y  P  R  P  K  I  *  R  S  K  G  V  H  *  D  R  R  L  W  P  L  Q  L  *  R  T  H  G  I  L  R  R  K  R  R  L  W  S  C  *  L  F  S  C  R  K  R  F  P  *  L  Y  R  V  P  R  *  S  *  *  S  I  S  R  P  E   : E  M  D  Q  N  V  D  L  K  H  S  W  I  V  Q  I  *  Q  *  S  N  N  S  S  I  C  K  R  H  M  E  N  *  T  C  *  I  T  L  N  V  K  P  V  K  G  *  S  Q  F  F  L  P  E  V  L  P  Y  H  Y  N  *  *  I  L  S  R  V  A  T  E  M  L  Q  V  L  N  I  Y  C  R  L  Y  I  F  E  N  N  E  V  C  F  E  Q  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23310" stop="23307"/>
                    <exon start="23126" stop="22735"/>
                    <exon start="22636" stop="22484"/>
                    <exon start="22176" stop="21811"/>
                    <exon start="21681" stop="21605"/>
                    <exon start="21510" stop="21324"/>
                    <exon start="21010" stop="20810"/>
                    <exon start="20655" stop="20539"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1494</number_coding_nucleotides>
                  <number_encoded_amino_acids>498</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDLDLLQEKLNQMRILDNVEIPTSVLELLIKAEENAADVEKAAEEEQLEEGKDEETEAVKAETTNVEEETEVEKVEVKDSQAKIKRIFGPHANRPQVVHMANLCVVSGHAVNGVAEIHSEIVKDEVFNEFYKLWPEKFQNKTNGVTPRRWLSFCNPELSEIITKWTGSDDWLVNTEKLAELRKFADNEELQSEWRKAKGNNKMKIVSLIKEKTGYVVSPDAMFDVQIKRIHEYKRQLLNIFGIVYRYKKMKEMSPEERKEKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVVFVPDYNVSVAEVLIPGSELSQHISTAGMEASGTSNMKFSMNGCLLIGTLDGANVEIREEVGEDNFFLFGAQAHEIAGLRKERAEGKFIPDPRFEEVKAFIRTGVFGPYNYEELMGSLEGNEGFGRADYFLVGKDFPDYIECQDKVDEAYRDQKKWTKMSILNTAGSFKFSSDRTIHQYARDIWRIEPVELP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="23665" e_stop="23568"/>
            <exon e_start="23424" e_stop="23307"/>
            <exon e_start="23163" e_stop="23017"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.927" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23665" e_stop="23568" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="0.927" acc_prob="0.986">
            <gDNA_intron_boundary i_start="23567" i_stop="23425" i_length="143"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23424" e_stop="23307" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.968">
            <gDNA_intron_boundary i_start="23306" i_stop="23164" i_length="143"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="23163" e_stop="23017" e_length="147"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23665" stop="23568"/>
              <exon start="23424" stop="23307"/>
              <exon start="23163" stop="23017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327425" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGACACTCATCCAACACTTTGCATACCAGAACTTTTAAGGATATTGATAGATGTTAAAGGTTTGAGCTGGAAGCAGGCATGGGGAATTACTCAAAG : AACGGTCGCATACACTAACCACACTGTTTTACCCGAGGCTCTAGAGAAATGGAGCTTCACACTTCTTGGTGAACTGCTTCCTCGGCACGTGGAGATCATAGCAATGATAGATGAGGAG : CTTTTGCTAACTATACTTACTGAATATGGTACTGAAGATCTTGACTTGTTGCAAGAAAAGCTAAACCAAATGAGGATTCTGGATAATGTTGAAATACCTACTTCTGTTTTGGAGTTACTTATCAAAGCCGAAGAAAATGCTGCTGAT</gDNA_template>
            <first_frame> N  D  T  H  P  T  L  C  I  P  E  L  L  R  I  L  I  D  V  K  G  L  S  W  K  Q  A  W  G  I  T  Q  R :   T  V  A  Y  T  N  H  T  V  L  P  E  A  L  E  K  W  S  F  T  L  L  G  E  L  L  P  R  H  V  E  I  I  A  M  I  D  E  E  :  L  L  L  T  I  L  T  E  Y  G  T  E  D  L  D  L  L  Q  E  K  L  N  Q  M  R  I  L  D  N  V  E  I  P  T  S  V  L  E  L  L  I  K  A  E  E  N  A  A  D </first_frame>
            <second_frame>  M  T  L  I  Q  H  F  A  Y  Q  N  F  *  G  Y  *  *  M  L  K  V  *  A  G  S  R  H  G  E  L  L  K   : E  R  S  H  T  L  T  T  L  F  Y  P  R  L  *  R  N  G  A  S  H  F  L  V  N  C  F  L  G  T  W  R  S  *  Q  *  *  M  R  S :   F  C  *  L  Y  L  L  N  M  V  L  K  I  L  T  C  C  K  K  S  *  T  K  *  G  F  W  I  M  L  K  Y  L  L  L  F  W  S  Y  L  S  K  P  K  K  M  L  L   </second_frame>
            <third_frame>   *  H  S  S  N  T  L  H  T  R  T  F  K  D  I  D  R  C  *  R  F  E  L  E  A  G  M  G  N  Y  S  K  :  N  G  R  I  H  *  P  H  C  F  T  R  G  S  R  E  M  E  L  H  T  S  W  *  T  A  S  S  A  R  G  D  H  S  N  D  R  *  G   : A  F  A  N  Y  T  Y  *  I  W  Y  *  R  S  *  L  V  A  R  K  A  K  P  N  E  D  S  G  *  C  *  N  T  Y  F  C  F  G  V  T  Y  Q  S  R  R  K  C  C  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23665" stop="23568"/>
                    <exon start="23424" stop="23307"/>
                    <exon start="23163" stop="23017"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDTHPTLCIPELLRILIDVKGLSWKQAWGITQRTVAYTNHTVLPEALEKWSFTLLGELLPRHVEIIAMIDEELLLTILTEYGTEDLDLLQEKLNQMRILDNVEIPTSVLELLIKAEENAAD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="26504" PGL_stop="23702"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26504" e_stop="26261"/>
            <exon e_start="25494" e_stop="25262"/>
            <exon e_start="25168" e_stop="25067"/>
            <exon e_start="24745" e_stop="24569"/>
            <exon e_start="24454" e_stop="24179"/>
            <exon e_start="23839" e_stop="23702"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.539" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.978" e_score="0.993"/>
          <exon-intron don_prob="0.994" acc_prob="0.961" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26504" e_stop="26261" e_length="244"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.974">
            <gDNA_intron_boundary i_start="26260" i_stop="25495" i_length="766"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25494" e_stop="25262" e_length="233"/>
          </exon>
          <intron i_serial="2" don_prob="0.868" acc_prob="0.996">
            <gDNA_intron_boundary i_start="25261" i_stop="25169" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25168" e_stop="25067" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.539" acc_prob="0.989">
            <gDNA_intron_boundary i_start="25066" i_stop="24746" i_length="321"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="24745" e_stop="24569" e_length="177"/>
          </exon>
          <intron i_serial="4" don_prob="0.930" acc_prob="0.978">
            <gDNA_intron_boundary i_start="24568" i_stop="24455" i_length="114"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24454" e_stop="24179" e_length="276"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.961">
            <gDNA_intron_boundary i_start="24178" i_stop="23840" i_length="339"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23839" e_stop="23702" e_length="138"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26504" stop="26261"/>
              <exon start="25494" stop="25262"/>
              <exon start="25168" stop="25067"/>
              <exon start="24745" stop="24611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24644" stop="24569"/>
              <exon start="24454" stop="24179"/>
              <exon start="23839" stop="23702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324907" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTATCTAAAAATTTTAGCATTTTGAAAAATTTCAGTTCAGAGACATCATGGCAACTTTTGCTGTCTCTGGATTGAACTCAATTTCAAGTTTTAATAACAATTTCAGAAGCAAAAACTCAAATATTTTTTTGAGTAGAAAGAGGAGTTTATTGTTCAATTTAAGAAGAAGAAGAAGAAGTTTCTATGTTAGCAATGTTGCTAGTGATCAAAAGCAGAAGACAAAAGATTCTTCCTCTGATGAAG : GATTTACATTAGATGTTTATCAGCCGGACTCAACGTCTGTTTTATCAAGTATAAAGTATCACGCAGAGTTCACGCCATCATTTTCTCCTGAGAAGTTTGAACTTCCCAAGGCGTACTATGCAACTGCAGAGAGTGTTCGAGATATGCTCATTTTAAGTTGGAATGCCACATATGAATACTACGAAAAGATGAATGTAAAGCAGGCATATTACTTGTCTATGGAGTTTCTTCAG : GGAAGAGCTTTACTCAATGCTATTGGTAACTTGGGGCTAAACGGACCTTATGCAGATGCTTTAACTAAGCTCGGATACAGTTTAGAGGATGTAGCCAGGCAG : GAACCAGATGCAGCTTTAGGGAATGGAGGCTTAGGAAGACTTGCTTCTTGCTTTCTTGACTCAATGGCGACGCTAAACTACCCTGCATGGGGTTATGGACTTAGATACCAATATGGCCTTTTCAAACAGCTTATTACAAAAGATGGCCAGGAGGAAGTTGCTGAAAACTGGCTCGAG : ATGGGAAATCCATGGGAAATTGTCAGGAATGATATTTCGTATCCCGTAAAATTCTATGGGAAGGTCATTGAAGGAGCTGATGGGTCAAAGGAATGGGTTGGCGGAGAAGATATAACTGCTGTTGCCTATGATGTCCCAATACCAGGATATAAAACAAAAACAACTATCAACCTTCGACTGTGGTCAACAAAGCTAGCTGCAGAAGCTTTTGATCTACATGCTTTTAACAACGGAGACCATGCCAAAGCATATGAGGCACAGAAAAAGGCTGAGAAG : ATTTGCTATGTCTTATATCCAGGTGACGAGTCACTTGAGGGAAAGACACTTCGGTTAAAGCAACAATACACCCTATGTTCTGCTTCTCTTCAGGACATTATTGCACGGTTCGAGAAGAGATCAGGGAATGCAGTGAAC</gDNA_template>
            <first_frame> C  I  *  K  F  *  H  F  E  K  F  Q  F  R  D  I  M  A  T  F  A  V  S  G  L  N  S  I  S  S  F  N  N  N  F  R  S  K  N  S  N  I  F  L  S  R  K  R  S  L  L  F  N  L  R  R  R  R  R  S  F  Y  V  S  N  V  A  S  D  Q  K  Q  K  T  K  D  S  S  S  D  E   : G  F  T  L  D  V  Y  Q  P  D  S  T  S  V  L  S  S  I  K  Y  H  A  E  F  T  P  S  F  S  P  E  K  F  E  L  P  K  A  Y  Y  A  T  A  E  S  V  R  D  M  L  I  L  S  W  N  A  T  Y  E  Y  Y  E  K  M  N  V  K  Q  A  Y  Y  L  S  M  E  F  L  Q  :  G  R  A  L  L  N  A  I  G  N  L  G  L  N  G  P  Y  A  D  A  L  T  K  L  G  Y  S  L  E  D  V  A  R  Q  :  E  P  D  A  A  L  G  N  G  G  L  G  R  L  A  S  C  F  L  D  S  M  A  T  L  N  Y  P  A  W  G  Y  G  L  R  Y  Q  Y  G  L  F  K  Q  L  I  T  K  D  G  Q  E  E  V  A  E  N  W  L  E  :  M  G  N  P  W  E  I  V  R  N  D  I  S  Y  P  V  K  F  Y  G  K  V  I  E  G  A  D  G  S  K  E  W  V  G  G  E  D  I  T  A  V  A  Y  D  V  P  I  P  G  Y  K  T  K  T  T  I  N  L  R  L  W  S  T  K  L  A  A  E  A  F  D  L  H  A  F  N  N  G  D  H  A  K  A  Y  E  A  Q  K  K  A  E  K  :  I  C  Y  V  L  Y  P  G  D  E  S  L  E  G  K  T  L  R  L  K  Q  Q  Y  T  L  C  S  A  S  L  Q  D  I  I  A  R  F  E  K  R  S  G  N  A  V  N </first_frame>
            <second_frame>  V  S  K  N  F  S  I  L  K  N  F  S  S  E  T  S  W  Q  L  L  L  S  L  D  *  T  Q  F  Q  V  L  I  T  I  S  E  A  K  T  Q  I  F  F  *  V  E  R  G  V  Y  C  S  I  *  E  E  E  E  E  V  S  M  L  A  M  L  L  V  I  K  S  R  R  Q  K  I  L  P  L  M  K  :  D  L  H  *  M  F  I  S  R  T  Q  R  L  F  Y  Q  V  *  S  I  T  Q  S  S  R  H  H  F  L  L  R  S  L  N  F  P  R  R  T  M  Q  L  Q  R  V  F  E  I  C  S  F  *  V  G  M  P  H  M  N  T  T  K  R  *  M  *  S  R  H  I  T  C  L  W  S  F  F  R :   E  E  L  Y  S  M  L  L  V  T  W  G  *  T  D  L  M  Q  M  L  *  L  S  S  D  T  V  *  R  M  *  P  G  R :   N  Q  M  Q  L  *  G  M  E  A  *  E  D  L  L  L  A  F  L  T  Q  W  R  R  *  T  T  L  H  G  V  M  D  L  D  T  N  M  A  F  S  N  S  L  L  Q  K  M  A  R  R  K  L  L  K  T  G  S  R :   W  E  I  H  G  K  L  S  G  M  I  F  R  I  P  *  N  S  M  G  R  S  L  K  E  L  M  G  Q  R  N  G  L  A  E  K  I  *  L  L  L  P  M  M  S  Q  Y  Q  D  I  K  Q  K  Q  L  S  T  F  D  C  G  Q  Q  S  *  L  Q  K  L  L  I  Y  M  L  L  T  T  E  T  M  P  K  H  M  R  H  R  K  R  L  R  R :   F  A  M  S  Y  I  Q  V  T  S  H  L  R  E  R  H  F  G  *  S  N  N  T  P  Y  V  L  L  L  F  R  T  L  L  H  G  S  R  R  D  Q  G  M  Q  *   </second_frame>
            <third_frame>   Y  L  K  I  L  A  F  *  K  I  S  V  Q  R  H  H  G  N  F  C  C  L  W  I  E  L  N  F  K  F  *  *  Q  F  Q  K  Q  K  L  K  Y  F  F  E  *  K  E  E  F  I  V  Q  F  K  K  K  K  K  K  F  L  C  *  Q  C  C  *  *  S  K  A  E  D  K  R  F  F  L  *  *  R :   I  Y  I  R  C  L  S  A  G  L  N  V  C  F  I  K  Y  K  V  S  R  R  V  H  A  I  I  F  S  *  E  V  *  T  S  Q  G  V  L  C  N  C  R  E  C  S  R  Y  A  H  F  K  L  E  C  H  I  *  I  L  R  K  D  E  C  K  A  G  I  L  L  V  Y  G  V  S  S   : G  K  S  F  T  Q  C  Y  W  *  L  G  A  K  R  T  L  C  R  C  F  N  *  A  R  I  Q  F  R  G  C  S  Q  A   : G  T  R  C  S  F  R  E  W  R  L  R  K  T  C  F  L  L  S  *  L  N  G  D  A  K  L  P  C  M  G  L  W  T  *  I  P  I  W  P  F  Q  T  A  Y  Y  K  R  W  P  G  G  S  C  *  K  L  A  R   : D  G  K  S  M  G  N  C  Q  E  *  Y  F  V  S  R  K  I  L  W  E  G  H  *  R  S  *  W  V  K  G  M  G  W  R  R  R  Y  N  C  C  C  L  *  C  P  N  T  R  I  *  N  K  N  N  Y  Q  P  S  T  V  V  N  K  A  S  C  R  S  F  *  S  T  C  F  *  Q  R  R  P  C  Q  S  I  *  G  T  E  K  G  *  E   : D  L  L  C  L  I  S  R  *  R  V  T  *  G  K  D  T  S  V  K  A  T  I  H  P  M  F  C  F  S  S  G  H  Y  C  T  V  R  E  E  I  R  E  C  S  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26486" stop="26261"/>
                    <exon start="25494" stop="25262"/>
                    <exon start="25168" stop="25067"/>
                    <exon start="24745" stop="24569"/>
                    <exon start="24454" stop="24179"/>
                    <exon start="23839" stop="23702"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1152</number_coding_nucleotides>
                  <number_encoded_amino_acids>384</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFEKFQFRDIMATFAVSGLNSISSFNNNFRSKNSNIFLSRKRSLLFNLRRRRRSFYVSNVASDQKQKTKDSSSDEGFTLDVYQPDSTSVLSSIKYHAEFTPSFSPEKFELPKAYYATAESVRDMLILSWNATYEYYEKMNVKQAYYLSMEFLQGRALLNAIGNLGLNGPYADALTKLGYSLEDVARQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYQYGLFKQLITKDGQEEVAENWLEMGNPWEIVRNDISYPVKFYGKVIEGADGSKEWVGGEDITAVAYDVPIPGYKTKTTINLRLWSTKLAAEAFDLHAFNNGDHAKAYEAQKKAEKICYVLYPGDESLEGKTLRLKQQYTLCSASLQDIIARFEKRSGNAVN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="27389" PGL_stop="30937"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27389" e_stop="27495"/>
            <exon e_start="28695" e_stop="29087"/>
            <exon e_start="29357" e_stop="29450"/>
            <exon e_start="29533" e_stop="29660"/>
            <exon e_start="29753" e_stop="29850"/>
            <exon e_start="30386" e_stop="30937"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="0.972"/>
          <exon-intron don_prob="1.000" acc_prob="0.965" e_score="0.982"/>
          <exon-intron don_prob="0.920" acc_prob="0.999" e_score="0.989"/>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="27389" e_stop="27495" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27496" i_stop="28694" i_length="1199"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="28695" e_stop="29087" e_length="393"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.965">
            <gDNA_intron_boundary i_start="29088" i_stop="29356" i_length="269"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="29357" e_stop="29450" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="0.920" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29451" i_stop="29532" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29533" e_stop="29660" e_length="128"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="29661" i_stop="29752" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="29753" e_stop="29850" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29851" i_stop="30385" i_length="535"/>
          </intron>
          <exon e_serial="6" e_score="0.904">
            <gDNA_exon_boundary e_start="30386" e_stop="30937" e_length="552"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27389" stop="27495"/>
              <exon start="28695" stop="29087"/>
              <exon start="29357" stop="29450"/>
              <exon start="29533" stop="29660"/>
              <exon start="29753" stop="29850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27389" stop="27495"/>
              <exon start="28695" stop="29087"/>
              <exon start="29357" stop="29406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27390" stop="27495"/>
              <exon start="28695" stop="29083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27467" stop="27495"/>
              <exon start="28695" stop="28864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29575" stop="29660"/>
              <exon start="29753" stop="29850"/>
              <exon start="30386" stop="30937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547810" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACTTCTGAGAGGAAGAAATTTTCTGTAAAATTCAGTATTTCTTCCTCTCCCCTTAATTAATTAATTCCCTCTTCATAAATAGATCACATCTTCAATCATTCAAAG : GTGAAGTGAAAAATGTTTGGATTCAGGAAAAAAGCAGACTCTGCTACTCCTGATGAAAAAAATGTAATGAAAGCTGGTCGGAGGACATCCTCCGAGCCAGTTCTTGTCACACCTGATGACGATGATTTTGGAACATCATCGTCGTCATCAGGTGGGACAAGGAACAAACATAAAAGTAAGACAGAGGATTTTGATAACATGTCTGTGCAAGAATTGGAAGGGTATGCTGTAGACCAAGCTAAGGAGACAACGAGCTCGGTCAATAACTGTTTGAAGATAGCTGAGGATATTAGACAAGAAGGTGCTCAGACACTCGATACCTTGCATAAGCAAGGCGAGCAAATTAATCGTACTCATATGATGGCTGTTGAAATGGATCGCGATTTGAGCAAG : GGTGAAAAGTTATTGAACAATCTTGGTGGCATGTTCGCGATGCCTTGGAAGCCAAAGAAAACTCACGATATTAAAGGGCCTCGAACTTCAAAAG : ATGATAATCATAAAGGGAAAGGTAGTGCAAGTGAAAGGGAAAAATTAGGTTTGTCGAATGGTAAAAAGGGGAAATCAGCCTCGAGTACACCTCCTCCTGAATCGATGAATGCTATGCAGCAAATTGAG : TCTGAGAAGGCGAAGCAAGATGATGCACTTTCGGATTTGAGCAACATATTGGGTGATCTAAAAGGCATGGCTGTTGACATGGGATCTGAACTTGACAA : GCAAAACAAAGCTATAGATGATCTTGACAAAGATGTTGATGAATTAAACTCTAGAGTTAAAGGTGCAAATCGACGTGCACGTCAAATAGTAGGGAAGTGAAAGAAGAGGACACTTGTTTTTTCCTATGTTGCTCTGACTTTTCCAAAATTGTTGATGTACTCGTGTCAGATCCTTCGAAATACACTACTTTTGATTCGCGACATTTTTGAAGAGTCTGAGCATCATAACTTGCTTCAACATCAGATTTACTGAGTTTTTTGGCATTTTGGCTTTAAGGTCTATTGGAAGTTTTGGTTGCTTCTTTTTAACTTTTTTTCTTTTAATTTCATTTTTTTGTTATTAAGATTACCTTTTCTAATTTTTAAGTTTTACTGGATTATTTCATTGTTTATTGTTCATTTGTAATTATAAAATAAAAAAATAAAAAAGCCTTTTTATAATTAGTTTTTCGATGATTTGATCGGTTTGATTCTGTTTATTTTTAGTTTATTACTATCGTTATATAAACATGCTAAAGTAAATCAAATCAGTAAAATATTCTATATTGATCA</gDNA_template>
            <first_frame> L  L  L  R  G  R  N  F  L  *  N  S  V  F  L  P  L  P  L  I  N  *  F  P  L  H  K  *  I  T  S  S  I  I  Q  R :   *  S  E  K  C  L  D  S  G  K  K  Q  T  L  L  L  L  M  K  K  M  *  *  K  L  V  G  G  H  P  P  S  Q  F  L  S  H  L  M  T  M  I  L  E  H  H  R  R  H  Q  V  G  Q  G  T  N  I  K  V  R  Q  R  I  L  I  T  C  L  C  K  N  W  K  G  M  L  *  T  K  L  R  R  Q  R  A  R  S  I  T  V  *  R  *  L  R  I  L  D  K  K  V  L  R  H  S  I  P  C  I  S  K  A  S  K  L  I  V  L  I  *  W  L  L  K  W  I  A  I  *  A  R :   V  K  S  Y  *  T  I  L  V  A  C  S  R  C  L  G  S  Q  R  K  L  T  I  L  K  G  L  E  L  Q  K  :  M  I  I  I  K  G  K  V  V  Q  V  K  G  K  N  *  V  C  R  M  V  K  R  G  N  Q  P  R  V  H  L  L  L  N  R  *  M  L  C  S  K  L  S :   L  R  R  R  S  K  M  M  H  F  R  I  *  A  T  Y  W  V  I  *  K  A  W  L  L  T  W  D  L  N  L  T   : S  K  T  K  L  *  M  I  L  T  K  M  L  M  N  *  T  L  E  L  K  V  Q  I  D  V  H  V  K  *  *  G  S  E  R  R  G  H  L  F  F  P  M  L  L  *  L  F  Q  N  C  *  C  T  R  V  R  S  F  E  I  H  Y  F  *  F  A  T  F  L  K  S  L  S  I  I  T  C  F  N  I  R  F  T  E  F  F  G  I  L  A  L  R  S  I  G  S  F  G  C  F  F  L  T  F  F  L  L  I  S  F  F  C  Y  *  D  Y  L  F  *  F  L  S  F  T  G  L  F  H  C  L  L  F  I  C  N  Y  K  I  K  K  *  K  S  L  F  I  I  S  F  S  M  I  *  S  V  *  F  C  L  F  L  V  Y  Y  Y  R  Y  I  N  M  L  K  *  I  K  S  V  K  Y  S  I  L  I  </first_frame>
            <second_frame>  Y  F  *  E  E  E  I  F  C  K  I  Q  Y  F  F  L  S  P  *  L  I  N  S  L  F  I  N  R  S  H  L  Q  S  F  K   : G  E  V  K  N  V  W  I  Q  E  K  S  R  L  C  Y  S  *  *  K  K  C  N  E  S  W  S  E  D  I  L  R  A  S  S  C  H  T  *  *  R  *  F  W  N  I  I  V  V  I  R  W  D  K  E  Q  T  *  K  *  D  R  G  F  *  *  H  V  C  A  R  I  G  R  V  C  C  R  P  S  *  G  D  N  E  L  G  Q  *  L  F  E  D  S  *  G  Y  *  T  R  R  C  S  D  T  R  Y  L  A  *  A  R  R  A  N  *  S  Y  S  Y  D  G  C  *  N  G  S  R  F  E  Q   : G  *  K  V  I  E  Q  S  W  W  H  V  R  D  A  L  E  A  K  E  N  S  R  Y  *  R  A  S  N  F  K  R :   *  *  S  *  R  E  R  *  C  K  *  K  G  K  I  R  F  V  E  W  *  K  G  E  I  S  L  E  Y  T  S  S  *  I  D  E  C  Y  A  A  N  *   : V  *  E  G  E  A  R  *  C  T  F  G  F  E  Q  H  I  G  *  S  K  R  H  G  C  *  H  G  I  *  T  *  Q  :  A  K  Q  S  Y  R  *  S  *  Q  R  C  *  *  I  K  L  *  S  *  R  C  K  S  T  C  T  S  N  S  R  E  V  K  E  E  D  T  C  F  F  L  C  C  S  D  F  S  K  I  V  D  V  L  V  S  D  P  S  K  Y  T  T  F  D  S  R  H  F  *  R  V  *  A  S  *  L  A  S  T  S  D  L  L  S  F  L  A  F  W  L  *  G  L  L  E  V  L  V  A  S  F  *  L  F  F  F  *  F  H  F  F  V  I  K  I  T  F  S  N  F  *  V  L  L  D  Y  F  I  V  Y  C  S  F  V  I  I  K  *  K  N  K  K  A  F  L  *  L  V  F  R  *  F  D  R  F  D  S  V  Y  F  *  F  I  T  I  V  I  *  T  C  *  S  K  S  N  Q  *  N  I  L  Y  *  S </second_frame>
            <third_frame>   T  S  E  R  K  K  F  S  V  K  F  S  I  S  S  S  P  L  N  *  L  I  P  S  S  *  I  D  H  I  F  N  H  S  K  :  V  K  *  K  M  F  G  F  R  K  K  A  D  S  A  T  P  D  E  K  N  V  M  K  A  G  R  R  T  S  S  E  P  V  L  V  T  P  D  D  D  D  F  G  T  S  S  S  S  S  G  G  T  R  N  K  H  K  S  K  T  E  D  F  D  N  M  S  V  Q  E  L  E  G  Y  A  V  D  Q  A  K  E  T  T  S  S  V  N  N  C  L  K  I  A  E  D  I  R  Q  E  G  A  Q  T  L  D  T  L  H  K  Q  G  E  Q  I  N  R  T  H  M  M  A  V  E  M  D  R  D  L  S  K  :  G  E  K  L  L  N  N  L  G  G  M  F  A  M  P  W  K  P  K  K  T  H  D  I  K  G  P  R  T  S  K   : D  D  N  H  K  G  K  G  S  A  S  E  R  E  K  L  G  L  S  N  G  K  K  G  K  S  A  S  S  T  P  P  P  E  S  M  N  A  M  Q  Q  I  E  :  S  E  K  A  K  Q  D  D  A  L  S  D  L  S  N  I  L  G  D  L  K  G  M  A  V  D  M  G  S  E  L  D  K :   Q  N  K  A  I  D  D  L  D  K  D  V  D  E  L  N  S  R  V  K  G  A  N  R  R  A  R  Q  I  V  G  K  *  K  K  R  T  L  V  F  S  Y  V  A  L  T  F  P  K  L  L  M  Y  S  C  Q  I  L  R  N  T  L  L  L  I  R  D  I  F  E  E  S  E  H  H  N  L  L  Q  H  Q  I  Y  *  V  F  W  H  F  G  F  K  V  Y  W  K  F  W  L  L  L  F  N  F  F  S  F  N  F  I  F  L  L  L  R  L  P  F  L  I  F  K  F  Y  W  I  I  S  L  F  I  V  H  L  *  L  *  N  K  K  I  K  K  P  F  Y  N  *  F  F  D  D  L  I  G  L  I  L  F  I  F  S  L  L  L  S  L  Y  K  H  A  K  V  N  Q  I  S  K  I  F  Y  I  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28704" stop="29087"/>
                    <exon start="29357" stop="29450"/>
                    <exon start="29533" stop="29660"/>
                    <exon start="29753" stop="29850"/>
                    <exon start="30386" stop="30485"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMFGFRKKADSATPDEKNVMKAGRRTSSEPVLVTPDDDDFGTSSSSSGGTRNKHKSKTEDFDNMSVQELEGYAVDQAKETTSSVNNCLKIAEDIRQEGAQTLDTLHKQGEQINRTHMMAVEMDRDLSKGEKLLNNLGGMFAMPWKPKKTHDIKGPRTSKDDNHKGKGSASEREKLGLSNGKKGKSASSTPPPESMNAMQQIESEKAKQDDALSDLSNILGDLKGMAVDMGSELDKQNKAIDDLDKDVDELNSRVKGANRRARQIVGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="32029" PGL_stop="32621"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32029" e_stop="32621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="32029" e_stop="32621" e_length="593"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32029" stop="32621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713252" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCGCCATTAAAACACCTCTTTTTTCCATCTTCTTCGAGTTGAAGAATGGCGCGTAAATGTATAGTGCTAGCTTGTTTGATCTTCCTTTCCTTCTCTGCAATGGCTTCAATTCCCAATTCGACGAAAAAATATGATCAAGAAGATCATCTTCATTCACCTTCTGTAATTTGCTATCAATTCCAAAGAATTCGCCACTGTCCACCATTTCCTCCACAGCTTTCGTCGCCATTATCATCTTCATCACTGGATGAAATTGAACCAAGATTTGGTGCGGAGAAAAGATCAATCCCTTCTGGTCCTAATCCTCTGCACAACTGAAAAAAAAAAAAACAGAGCACCACCATTTTCATGGAAAGAAAGTTCATTTCTTCGATTATTTAGTTACCCTTTTCATATTTCAGAAGAAAACTCGAAGAAGAAGGAGAAGTAGAAATCGATTTGCTTATGTAATCAGAGTTCTATTTTTTTTTTGTCAATATTATGTACTAAGTTTTAAGTTTTTAGTTCTTGTTTTGTCTGCATTAAGAGATTATTTAGTTACGATTTTATAACAAAGTTCGAGAATTGATGTGTATTCGAATCATAATAATA</gDNA_template>
            <first_frame> N  R  H  *  N  T  S  F  F  H  L  L  R  V  E  E  W  R  V  N  V  *  C  *  L  V  *  S  S  F  P  S  L  Q  W  L  Q  F  P  I  R  R  K  N  M  I  K  K  I  I  F  I  H  L  L  *  F  A  I  N  S  K  E  F  A  T  V  H  H  F  L  H  S  F  R  R  H  Y  H  L  H  H  W  M  K  L  N  Q  D  L  V  R  R  K  D  Q  S  L  L  V  L  I  L  C  T  T  E  K  K  K  N  R  A  P  P  F  S  W  K  E  S  S  F  L  R  L  F  S  Y  P  F  H  I  S  E  E  N  S  K  K  K  E  K  *  K  S  I  C  L  C  N  Q  S  S  I  F  F  L  S  I  L  C  T  K  F  *  V  F  S  S  C  F  V  C  I  K  R  L  F  S  Y  D  F  I  T  K  F  E  N  *  C  V  F  E  S  *  *   </first_frame>
            <second_frame>  I  A  I  K  T  P  L  F  S  I  F  F  E  L  K  N  G  A  *  M  Y  S  A  S  L  F  D  L  P  F  L  L  C  N  G  F  N  S  Q  F  D  E  K  I  *  S  R  R  S  S  S  F  T  F  C  N  L  L  S  I  P  K  N  S  P  L  S  T  I  S  S  T  A  F  V  A  I  I  I  F  I  T  G  *  N  *  T  K  I  W  C  G  E  K  I  N  P  F  W  S  *  S  S  A  Q  L  K  K  K  K  T  E  H  H  H  F  H  G  K  K  V  H  F  F  D  Y  L  V  T  L  F  I  F  Q  K  K  T  R  R  R  R  R  S  R  N  R  F  A  Y  V  I  R  V  L  F  F  F  C  Q  Y  Y  V  L  S  F  K  F  L  V  L  V  L  S  A  L  R  D  Y  L  V  T  I  L  *  Q  S  S  R  I  D  V  Y  S  N  H  N  N  </second_frame>
            <third_frame>   S  P  L  K  H  L  F  F  P  S  S  S  S  *  R  M  A  R  K  C  I  V  L  A  C  L  I  F  L  S  F  S  A  M  A  S  I  P  N  S  T  K  K  Y  D  Q  E  D  H  L  H  S  P  S  V  I  C  Y  Q  F  Q  R  I  R  H  C  P  P  F  P  P  Q  L  S  S  P  L  S  S  S  S  L  D  E  I  E  P  R  F  G  A  E  K  R  S  I  P  S  G  P  N  P  L  H  N  *  K  K  K  K  Q  S  T  T  I  F  M  E  R  K  F  I  S  S  I  I  *  L  P  F  S  Y  F  R  R  K  L  E  E  E  G  E  V  E  I  D  L  L  M  *  S  E  F  Y  F  F  F  V  N  I  M  Y  *  V  L  S  F  *  F  L  F  C  L  H  *  E  I  I  *  L  R  F  Y  N  K  V  R  E  L  M  C  I  R  I  I  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32073" stop="32348"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMARKCIVLACLIFLSFSAMASIPNSTKKYDQEDHLHSPSVICYQFQRIRHCPPFPPQLSSPLSSSSLDEIEPRFGAEKRSIPSGPNPLHN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32197" stop="32460"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FAINSKEFATVHHFLHSFRRHYHLHHWMKLNQDLVRRKDQSLLVLILCTTEKKKNRAPPFSWKESSFLRLFSYPFHISEENSKKKEK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32333" stop="32581"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSAQLKKKKTEHHHFHGKKVHFFDYLVTLFIFQKKTRRRRRSRNRFAYVIRVLFFFCQYYVLSFKFLVLVLSALRDYLVTIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="44540" PGL_stop="45681"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44540" e_stop="44623"/>
            <exon e_start="44704" e_stop="44792"/>
            <exon e_start="44875" e_stop="45114"/>
            <exon e_start="45530" e_stop="45681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.345" e_score="1.000"/>
          <exon-intron don_prob="0.748" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.671" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44540" e_stop="44623" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.345">
            <gDNA_intron_boundary i_start="44624" i_stop="44703" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44704" e_stop="44792" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.748" acc_prob="0.978">
            <gDNA_intron_boundary i_start="44793" i_stop="44874" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44875" e_stop="45114" e_length="240"/>
          </exon>
          <intron i_serial="3" don_prob="0.671" acc_prob="0.982">
            <gDNA_intron_boundary i_start="45115" i_stop="45529" i_length="415"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45530" e_stop="45681" e_length="152"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44540" stop="44623"/>
              <exon start="44704" stop="44792"/>
              <exon start="44875" stop="45114"/>
              <exon start="45530" stop="45681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337621" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTTTTTATCTGATCTTTGAAATAGCTTTTTAATATAAGGCTCCATTACACAAAGAAAGAATGGATATGCTTAAGCAAATAAG : GGTGAAGTTTACCGGTATAGGAGAAGAAGAGAGAGGTGGCAGCAGCAGAGATAGAACAATACCACCACAGAAAACTCAACTTTTTAAAG : AAACAAAAAGAATACCTAGCTGGTTGCACAGACAGTTTCCAAGGACAATGAGTCGTGATTATGATTCCAGTGATAGCATTGATTATCCAGCTGCGGTGGCAGCAGCTGCATTTGCTATAACATCAATTGAAGAAAAGAGTGAATACGACCACAGAAGGACAAATAGTGGAGGTGATAAACCTTTGACAAAGATCAAAAGTAAAGGAGAGGATATTGCCAAGAAACCTGAAAAGCTCTCAG : ATGAAGCTTCAAAATCAAGTTCAAAAATTCCATATAAAAGTGAGCCAATAGGGTCAACAACAATCAATCCGGAGCCAGTTAAATCTGTGCCATCTATTAAGAAGAAACCAACTTTTGGAGATACCAAACCTGAAAGTGAAGTTGTTGGAAAG</gDNA_template>
            <first_frame> N  F  L  S  D  L  *  N  S  F  L  I  *  G  S  I  T  Q  R  K  N  G  Y  A  *  A  N  K  :  G  E  V  Y  R  Y  R  R  R  R  E  R  W  Q  Q  Q  R  *  N  N  T  T  T  E  N  S  T  F  *  R :   N  K  K  N  T  *  L  V  A  Q  T  V  S  K  D  N  E  S  *  L  *  F  Q  *  *  H  *  L  S  S  C  G  G  S  S  C  I  C  Y  N  I  N  *  R  K  E  *  I  R  P  Q  K  D  K  *  W  R  *  *  T  F  D  K  D  Q  K  *  R  R  G  Y  C  Q  E  T  *  K  A  L  R :   *  S  F  K  I  K  F  K  N  S  I  *  K  *  A  N  R  V  N  N  N  Q  S  G  A  S  *  I  C  A  I  Y  *  E  E  T  N  F  W  R  Y  Q  T  *  K  *  S  C  W  K  </first_frame>
            <second_frame>  T  F  Y  L  I  F  E  I  A  F  *  Y  K  A  P  L  H  K  E  R  M  D  M  L  K  Q  I  R :   V  K  F  T  G  I  G  E  E  E  R  G  G  S  S  R  D  R  T  I  P  P  Q  K  T  Q  L  F  K   : E  T  K  R  I  P  S  W  L  H  R  Q  F  P  R  T  M  S  R  D  Y  D  S  S  D  S  I  D  Y  P  A  A  V  A  A  A  A  F  A  I  T  S  I  E  E  K  S  E  Y  D  H  R  R  T  N  S  G  G  D  K  P  L  T  K  I  K  S  K  G  E  D  I  A  K  K  P  E  K  L  S   : D  E  A  S  K  S  S  S  K  I  P  Y  K  S  E  P  I  G  S  T  T  I  N  P  E  P  V  K  S  V  P  S  I  K  K  K  P  T  F  G  D  T  K  P  E  S  E  V  V  G  K </second_frame>
            <third_frame>   L  F  I  *  S  L  K  *  L  F  N  I  R  L  H  Y  T  K  K  E  W  I  C  L  S  K  *   : G  *  S  L  P  V  *  E  K  K  R  E  V  A  A  A  E  I  E  Q  Y  H  H  R  K  L  N  F  L  K  :  K  Q  K  E  Y  L  A  G  C  T  D  S  F  Q  G  Q  *  V  V  I  M  I  P  V  I  A  L  I  I  Q  L  R  W  Q  Q  L  H  L  L  *  H  Q  L  K  K  R  V  N  T  T  T  E  G  Q  I  V  E  V  I  N  L  *  Q  R  S  K  V  K  E  R  I  L  P  R  N  L  K  S  S  Q  :  M  K  L  Q  N  Q  V  Q  K  F  H  I  K  V  S  Q  *  G  Q  Q  Q  S  I  R  S  Q  L  N  L  C  H  L  L  R  R  N  Q  L  L  E  I  P  N  L  K  V  K  L  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44574" stop="44623"/>
                    <exon start="44704" stop="44792"/>
                    <exon start="44875" stop="45114"/>
                    <exon start="45530" stop="45681"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKAPLHKERMDMLKQIRVKFTGIGEEERGGSSRDRTIPPQKTQLFKETKRIPSWLHRQFPRTMSRDYDSSDSIDYPAAVAAAAFAITSIEEKSEYDHRRTNSGGDKPLTKIKSKGEDIAKKPEKLSDEASKSSSKIPYKSEPIGSTTINPEPVKSVPSIKKKPTFGDTKPESEVVGK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="47409" PGL_stop="46795"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47409" e_stop="46795"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47409" e_stop="46795" e_length="615"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47409" stop="46811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330067" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47355" stop="46795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47304" stop="46813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213137" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47044" stop="46811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344698" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCAATTAATGTGCTCCTCCCCTTGTACTTCAAATACCAGGAACGCGAGTTCTGTTACGAACTGCAGGAGGGCTCATCGTATAGGATCTTCGGGGTCTGGCACTAGTGGTCCTAATACAAATGATACCCCTACAATGCAAAGGACCCAGTTTTCTCTTCAGAAGTCCCTTGATTTCTTTTTCCTGTTGACATCCAAATTTCCGTTGGTTGTTGCACTTCTTCTGGTTGTTATATTTGTGATACCTTCCAGTGTGGGCATCTTGATTCTATACCTGGTGATCACAATTCTTTTTGGACTTCCATCTTTGCTAGTTATATACTTCGCTTATCCTGCTCTAGATTGGCTGGTGAGAGAGATTACTTCTTGAAGTATTTCTGTTCAATTTGTTTGAGGATTACTTTTTAGAGTTTCGAGGATGTAATACATAGTACTGTTTGCACTAGTAAACAATGTCTCATCAGTTTGATCTTAGTTTTCATATCAAGAGATGGTGTAAATAGTTGTTGGTTTTTGTGGAGGTTAAGGTTAATTTTCCTTCAAAGTTTGTATCTGCTATTGTTAATGGATGAATGATATCGCGGGGTTGCTCTTTCTACTATAACTGTATTGAGAT</gDNA_template>
            <first_frame> D  Q  L  M  C  S  S  P  C  T  S  N  T  R  N  A  S  S  V  T  N  C  R  R  A  H  R  I  G  S  S  G  S  G  T  S  G  P  N  T  N  D  T  P  T  M  Q  R  T  Q  F  S  L  Q  K  S  L  D  F  F  F  L  L  T  S  K  F  P  L  V  V  A  L  L  L  V  V  I  F  V  I  P  S  S  V  G  I  L  I  L  Y  L  V  I  T  I  L  F  G  L  P  S  L  L  V  I  Y  F  A  Y  P  A  L  D  W  L  V  R  E  I  T  S  *  S  I  S  V  Q  F  V  *  G  L  L  F  R  V  S  R  M  *  Y  I  V  L  F  A  L  V  N  N  V  S  S  V  *  S  *  F  S  Y  Q  E  M  V  *  I  V  V  G  F  C  G  G  *  G  *  F  S  F  K  V  C  I  C  Y  C  *  W  M  N  D  I  A  G  L  L  F  L  L  *  L  Y  *  D </first_frame>
            <second_frame>  I  N  *  C  A  P  P  L  V  L  Q  I  P  G  T  R  V  L  L  R  T  A  G  G  L  I  V  *  D  L  R  G  L  A  L  V  V  L  I  Q  M  I  P  L  Q  C  K  G  P  S  F  L  F  R  S  P  L  I  S  F  S  C  *  H  P  N  F  R  W  L  L  H  F  F  W  L  L  Y  L  *  Y  L  P  V  W  A  S  *  F  Y  T  W  *  S  Q  F  F  L  D  F  H  L  C  *  L  Y  T  S  L  I  L  L  *  I  G  W  *  E  R  L  L  L  E  V  F  L  F  N  L  F  E  D  Y  F  L  E  F  R  G  C  N  T  *  Y  C  L  H  *  *  T  M  S  H  Q  F  D  L  S  F  H  I  K  R  W  C  K  *  L  L  V  F  V  E  V  K  V  N  F  P  S  K  F  V  S  A  I  V  N  G  *  M  I  S  R  G  C  S  F  Y  Y  N  C  I  E   </second_frame>
            <third_frame>   S  I  N  V  L  L  P  L  Y  F  K  Y  Q  E  R  E  F  C  Y  E  L  Q  E  G  S  S  Y  R  I  F  G  V  W  H  *  W  S  *  Y  K  *  Y  P  Y  N  A  K  D  P  V  F  S  S  E  V  P  *  F  L  F  P  V  D  I  Q  I  S  V  G  C  C  T  S  S  G  C  Y  I  C  D  T  F  Q  C  G  H  L  D  S  I  P  G  D  H  N  S  F  W  T  S  I  F  A  S  Y  I  L  R  L  S  C  S  R  L  A  G  E  R  D  Y  F  L  K  Y  F  C  S  I  C  L  R  I  T  F  *  S  F  E  D  V  I  H  S  T  V  C  T  S  K  Q  C  L  I  S  L  I  L  V  F  I  S  R  D  G  V  N  S  C  W  F  L  W  R  L  R  L  I  F  L  Q  S  L  Y  L  L  L  L  M  D  E  *  Y  R  G  V  A  L  S  T  I  T  V  L  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47409" stop="47041"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DQLMCSSPCTSNTRNASSVTNCRRAHRIGSSGSGTSGPNTNDTPTMQRTQFSLQKSLDFFFLLTSKFPLVVALLLVVIFVIPSSVGILILYLVITILFGLPSLLVIYFAYPALDWLVREITS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="46881" PGL_stop="47238"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46881" e_stop="47238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="46881" e_stop="47238" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46881" stop="47238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747211" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCTTAACCTCCACAAAAACCAACAACTATTTACACCATCTCTTGATATGAAAACTAAGATCAAACTGATGAGACATTGTTTACTAGTGCAAACAGTACTATGTATTACATCCTCGAAACTCTAAAAAGTAATCCTCAAACAAATTGAACAGAAATACTTCAAGAAGTAATCTCTCTCACCAGCCAATCTAGAGCAGGATAAGCGAAGTATATAACTAGCAAAGATGGAAGTCCAAAAAGAATTGTGATCACCAGGTATAGAATCAAGATGCCCACACTGGAAGGTATCACAAATATAACAACCAGAAGAAGTGCAACAACCAACGGAAATTTGGATGTCAACAGGAAAAAGAAATC</gDNA_template>
            <first_frame> N  L  N  L  H  K  N  Q  Q  L  F  T  P  S  L  D  M  K  T  K  I  K  L  M  R  H  C  L  L  V  Q  T  V  L  C  I  T  S  S  K  L  *  K  V  I  L  K  Q  I  E  Q  K  Y  F  K  K  *  S  L  S  P  A  N  L  E  Q  D  K  R  S  I  *  L  A  K  M  E  V  Q  K  E  L  *  S  P  G  I  E  S  R  C  P  H  W  K  V  S  Q  I  *  Q  P  E  E  V  Q  Q  P  T  E  I  W  M  S  T  G  K  R  N  </first_frame>
            <second_frame>  T  L  T  S  T  K  T  N  N  Y  L  H  H  L  L  I  *  K  L  R  S  N  *  *  D  I  V  Y  *  C  K  Q  Y  Y  V  L  H  P  R  N  S  K  K  *  S  S  N  K  L  N  R  N  T  S  R  S  N  L  S  H  Q  P  I  *  S  R  I  S  E  V  Y  N  *  Q  R  W  K  S  K  K  N  C  D  H  Q  V  *  N  Q  D  A  H  T  G  R  Y  H  K  Y  N  N  Q  K  K  C  N  N  Q  R  K  F  G  C  Q  Q  E  K  E  I </second_frame>
            <third_frame>   P  *  P  P  Q  K  P  T  T  I  Y  T  I  S  *  Y  E  N  *  D  Q  T  D  E  T  L  F  T  S  A  N  S  T  M  Y  Y  I  L  E  T  L  K  S  N  P  Q  T  N  *  T  E  I  L  Q  E  V  I  S  L  T  S  Q  S  R  A  G  *  A  K  Y  I  T  S  K  D  G  S  P  K  R  I  V  I  T  R  Y  R  I  K  M  P  T  L  E  G  I  T  N  I  T  T  R  R  S  A  T  T  N  G  N  L  D  V  N  R  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0193P17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="49781" PGL_stop="47645"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49781" e_stop="49751"/>
            <exon e_start="47908" e_stop="47645"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.916" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49781" e_stop="49751" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.916" acc_prob="0.925">
            <gDNA_intron_boundary i_start="49750" i_stop="47909" i_length="1842"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47908" e_stop="47645" e_length="264"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49781" stop="49751"/>
              <exon start="47908" stop="47645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264515" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTTCTGAAAAACCATCTTTTTTATTCAA : GTTCAAAAGAGGTGCTTTAAATTGAACAAAGTGTTTTCTGTCAGATCCTTATTGTACTAGTTGTTCTGTCTCTATGTGGAAATCCATTTCAAATGTCATCACAAGCTTTGGCCAGAAGAAGGATTCTGCTACGCCCAGTCAAACTTGTCACGAGTACTCAGATGACGATGATATCCGCTCTAATGACAGCACTGAGGAAGGACTAGAATGCCCAATATGTTGGGAATCATTTAACATTGTTGAGAATGTTCCCTATGTATTGTG</gDNA_template>
            <first_frame> K  F  L  K  N  H  L  F  Y  S   : S  S  K  E  V  L  *  I  E  Q  S  V  F  C  Q  I  L  I  V  L  V  V  L  S  L  C  G  N  P  F  Q  M  S  S  Q  A  L  A  R  R  R  I  L  L  R  P  V  K  L  V  T  S  T  Q  M  T  M  I  S  A  L  M  T  A  L  R  K  D  *  N  A  Q  Y  V  G  N  H  L  T  L  L  R  M  F  P  M  Y  C  </first_frame>
            <second_frame>  N  F  *  K  T  I  F  F  I  Q  :  V  Q  K  R  C  F  K  L  N  K  V  F  S  V  R  S  L  L  Y  *  L  F  C  L  Y  V  E  I  H  F  K  C  H  H  K  L  W  P  E  E  G  F  C  Y  A  Q  S  N  L  S  R  V  L  R  *  R  *  Y  P  L  *  *  Q  H  *  G  R  T  R  M  P  N  M  L  G  I  I  *  H  C  *  E  C  S  L  C  I  V </second_frame>
            <third_frame>   I  S  E  K  P  S  F  L  F  K :   F  K  R  G  A  L  N  *  T  K  C  F  L  S  D  P  Y  C  T  S  C  S  V  S  M  W  K  S  I  S  N  V  I  T  S  F  G  Q  K  K  D  S  A  T  P  S  Q  T  C  H  E  Y  S  D  D  D  D  I  R  S  N  D  S  T  E  E  G  L  E  C  P  I  C  W  E  S  F  N  I  V  E  N  V  P  Y  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47883" stop="47647"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKCFLSDPYCTSCSVSMWKSISNVITSFGQKKDSATPSQTCHEYSDDDDIRSNDSTEEGLECPICWESFNIVENVPYVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="58920" PGL_stop="59834"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59226" e_stop="59749"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="59226" e_stop="59749" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59226" stop="59749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59348" stop="59730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCATAATTTTAAAAAAAGTTAATTAAACTCTAATTACTTCTTGCTTAAGAAATCACCAGCCATCTTAAGATAATCAGCTCCTTCACTCTTTTTTTCCTCCTCCTTATCTCCTTCAACAACCGGCTCCGGCGCCGGATCCGATTCCGATGCAGGCGCTGGTGCTTTTGCTTCTTCAGCAACCGGTGCGGCGGCCGGAGCCTTATCGCCACCGTACTGGTGGAGATAAGTTTGGGCCTTCTCAACGTACTGTCCAATTCCTTGAGTTTCGTCTAATTTTCCGTATTTCTGTGCAGCGTCGAGCACATCGGCTGCTGCTTCAGCCACTTTTTTGTTATCGATTTTTTCGGAATCTTTGTTGAATTGACTCTGAGCAGCATCTGCTAACACTTTAGCACTGGCGAAAAGCTCTGTTGTCGAACCTGATTCCTCGCCGGCTTTTTGGGAATCGTCGCCGGCTCCGGCGCTCTTAGCCAACGATGACAGAAAATTCATGATTTTTTTGTGAAGAAGAAGATTGAATTGT</gDNA_template>
            <first_frame> A  I  I  L  K  K  V  N  *  T  L  I  T  S  C  L  R  N  H  Q  P  S  *  D  N  Q  L  L  H  S  F  F  P  P  P  Y  L  L  Q  Q  P  A  P  A  P  D  P  I  P  M  Q  A  L  V  L  L  L  L  Q  Q  P  V  R  R  P  E  P  Y  R  H  R  T  G  G  D  K  F  G  P  S  Q  R  T  V  Q  F  L  E  F  R  L  I  F  R  I  S  V  Q  R  R  A  H  R  L  L  L  Q  P  L  F  C  Y  R  F  F  R  N  L  C  *  I  D  S  E  Q  H  L  L  T  L  *  H  W  R  K  A  L  L  S  N  L  I  P  R  R  L  F  G  N  R  R  R  L  R  R  S  *  P  T  M  T  E  N  S  *  F  F  C  E  E  E  D  *  I   </first_frame>
            <second_frame>  P  *  F  *  K  K  L  I  K  L  *  L  L  L  A  *  E  I  T  S  H  L  K  I  I  S  S  F  T  L  F  F  L  L  L  I  S  F  N  N  R  L  R  R  R  I  R  F  R  C  R  R  W  C  F  C  F  F  S  N  R  C  G  G  R  S  L  I  A  T  V  L  V  E  I  S  L  G  L  L  N  V  L  S  N  S  L  S  F  V  *  F  S  V  F  L  C  S  V  E  H  I  G  C  C  F  S  H  F  F  V  I  D  F  F  G  I  F  V  E  L  T  L  S  S  I  C  *  H  F  S  T  G  E  K  L  C  C  R  T  *  F  L  A  G  F  L  G  I  V  A  G  S  G  A  L  S  Q  R  *  Q  K  I  H  D  F  F  V  K  K  K  I  E  L  </second_frame>
            <third_frame>   H  N  F  K  K  S  *  L  N  S  N  Y  F  L  L  K  K  S  P  A  I  L  R  *  S  A  P  S  L  F  F  S  S  S  L  S  P  S  T  T  G  S  G  A  G  S  D  S  D  A  G  A  G  A  F  A  S  S  A  T  G  A  A  A  G  A  L  S  P  P  Y  W  W  R  *  V  W  A  F  S  T  Y  C  P  I  P  *  V  S  S  N  F  P  Y  F  C  A  A  S  S  T  S  A  A  A  S  A  T  F  L  L  S  I  F  S  E  S  L  L  N  *  L  *  A  A  S  A  N  T  L  A  L  A  K  S  S  V  V  E  P  D  S  S  P  A  F  W  E  S  S  P  A  P  A  L  L  A  N  D  D  R  K  F  M  I  F  L  *  R  R  R  L  N  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59295" stop="59585"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DNQLLHSFFPPPYLLQQPAPAPDPIPMQALVLLLLQQPVRRPEPYRHRTGGDKFGPSQRTVQFLEFRLIFRISVQRRAHRLLLQPLFCYRFFRNLC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59275" stop="59499"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EITSHLKIISSFTLFFLLLISFNNRLRRRIRFRCRRWCFCFFSNRCGGRSLIATVLVEISLGLLNVLSNSLSFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58925" e_stop="58927"/>
            <exon e_start="59073" e_stop="59171"/>
            <exon e_start="59374" e_stop="59834"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.695" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.919"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58925" e_stop="58927" e_length="3"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.695">
            <gDNA_intron_boundary i_start="58928" i_stop="59072" i_length="145"/>
          </intron>
          <exon e_serial="2" e_score="0.919">
            <gDNA_exon_boundary e_start="59073" e_stop="59171" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59172" i_stop="59373" i_length="202"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="59374" e_stop="59834" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58925" stop="58927"/>
              <exon start="59073" stop="59171"/>
              <exon start="59374" stop="59834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733173" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTT : AAGCAACGAAGATAACACTAATAAATTCAAACAAACACAAATTTCACTGAAATACACACAACTTACATACATATTACATAAACCCAACTCCGGCGCCGG : TGCAGGCGCTGGTGCTTTTGCTTCTTCAGCAACCGGTGCGGCGGCCGGAGCCTTATCGCCACCGTACTGGTGGAGATAAGTTTGGGCCTTCTCAACGTACTGTCCAATTCCTTGAGTTTCGTCTAATTTTCCGTATTTCTGTGCAGCGTCGAGCACATCGGCTGCTGCTTCAGCCACTTTTTTGTTATCGATTTTTTCGGAATCTTTGTTGAATTGACTCTGAGCAGCATCTGCTAACACTTTAGCACTGGCGAAAAGCTCTGTTGTCGAACCTGATTCCTCGCCGGCTTTTTGGGAATCGTCGCCGGCTCCGGCGCTCTTAGCCAACGATGACAGAAAATTCATGATTTTTTTGTGAAGAAGAAGATTGAATTGTGTATATGAGAGATATGATTTGAATAGTAAGGAGGCTGTATATATAGAGTCTCTTCTGGCACGTACCTCATTTGTTCTGATTGATT</gDNA_template>
            <first_frame> F  :  K  Q  R  R  *  H  *  *  I  Q  T  N  T  N  F  T  E  I  H  T  T  Y  I  H  I  T  *  T  Q  L  R  R  R  :  C  R  R  W  C  F  C  F  F  S  N  R  C  G  G  R  S  L  I  A  T  V  L  V  E  I  S  L  G  L  L  N  V  L  S  N  S  L  S  F  V  *  F  S  V  F  L  C  S  V  E  H  I  G  C  C  F  S  H  F  F  V  I  D  F  F  G  I  F  V  E  L  T  L  S  S  I  C  *  H  F  S  T  G  E  K  L  C  C  R  T  *  F  L  A  G  F  L  G  I  V  A  G  S  G  A  L  S  Q  R  *  Q  K  I  H  D  F  F  V  K  K  K  I  E  L  C  I  *  E  I  *  F  E  *  *  G  G  C  I  Y  R  V  S  S  G  T  Y  L  I  C  S  D  *   </first_frame>
            <second_frame>  L :   S  N  E  D  N  T  N  K  F  K  Q  T  Q  I  S  L  K  Y  T  Q  L  T  Y  I  L  H  K  P  N  S  G  A  G :   A  G  A  G  A  F  A  S  S  A  T  G  A  A  A  G  A  L  S  P  P  Y  W  W  R  *  V  W  A  F  S  T  Y  C  P  I  P  *  V  S  S  N  F  P  Y  F  C  A  A  S  S  T  S  A  A  A  S  A  T  F  L  L  S  I  F  S  E  S  L  L  N  *  L  *  A  A  S  A  N  T  L  A  L  A  K  S  S  V  V  E  P  D  S  S  P  A  F  W  E  S  S  P  A  P  A  L  L  A  N  D  D  R  K  F  M  I  F  L  *  R  R  R  L  N  C  V  Y  E  R  Y  D  L  N  S  K  E  A  V  Y  I  E  S  L  L  A  R  T  S  F  V  L  I  D  </second_frame>
            <third_frame>    : *  A  T  K  I  T  L  I  N  S  N  K  H  K  F  H  *  N  T  H  N  L  H  T  Y  Y  I  N  P  T  P  A  P   : V  Q  A  L  V  L  L  L  L  Q  Q  P  V  R  R  P  E  P  Y  R  H  R  T  G  G  D  K  F  G  P  S  Q  R  T  V  Q  F  L  E  F  R  L  I  F  R  I  S  V  Q  R  R  A  H  R  L  L  L  Q  P  L  F  C  Y  R  F  F  R  N  L  C  *  I  D  S  E  Q  H  L  L  T  L  *  H  W  R  K  A  L  L  S  N  L  I  P  R  R  L  F  G  N  R  R  R  L  R  R  S  *  P  T  M  T  E  N  S  *  F  F  C  E  E  E  D  *  I  V  Y  M  R  D  M  I  *  I  V  R  R  L  Y  I  *  S  L  F  W  H  V  P  H  L  F  *  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59123" stop="59171"/>
                    <exon start="59374" stop="59585"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTHNLHTYYINPTPAPVQALVLLLLQQPVRRPEPYRHRTGGDKFGPSQRTVQFLEFRLIFRISVQRRAHRLLLQPLFCYRFFRNLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="58920" e_stop="58927"/>
            <exon e_start="59114" e_stop="59170"/>
            <exon e_start="59379" e_stop="59803"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.750"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="58920" e_stop="58927" e_length="8"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58928" i_stop="59113" i_length="186"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59114" e_stop="59170" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59171" i_stop="59378" i_length="208"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="59379" e_stop="59803" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58920" stop="58927"/>
              <exon start="59114" stop="59170"/>
              <exon start="59379" stop="59803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712233" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCTTTT : TTTCACTGAAATACACACAACTTACATACATATTACATAAACCCAACTCCGGCGCCG : GCGCTGGTGCTTTTGCTTCTTCAGCAACCGGTGCGGCGGCCGGAGCCTTATCGCCACCGTACTGGTGGAGATAAGTTTGGGCCTTCTCAACGTACTGTCCAATTCCTTGAGTTTCGTCTAATTTTCCGTATTTCTGTGCAGCGTCGAGCACATCGGCTGCTGCTTCAGCCACTTTTTTGTTATCGATTTTTTCGGAATCTTTGTTGAATTGACTCTGAGCAGCATCTGCTAACACTTTAGCACTGGCGAAAAGCTCTGTTGTCGAACCTGATTCCTCGCCGGCTTTTTGGGAATCGTCGCCGGCTCCGGCGCTCTTAGCCAACGATGACAGAAAATTCATGATTTTTTTGTGAAGAAGAAGATTGAATTGTGTATATGAGAGATATGATTTGAATAGTAAGGAGGCTGTATATATAGAGTCTCTT</gDNA_template>
            <first_frame> Y  L  F :   F  T  E  I  H  T  T  Y  I  H  I  T  *  T  Q  L  R  R  R :   R  W  C  F  C  F  F  S  N  R  C  G  G  R  S  L  I  A  T  V  L  V  E  I  S  L  G  L  L  N  V  L  S  N  S  L  S  F  V  *  F  S  V  F  L  C  S  V  E  H  I  G  C  C  F  S  H  F  F  V  I  D  F  F  G  I  F  V  E  L  T  L  S  S  I  C  *  H  F  S  T  G  E  K  L  C  C  R  T  *  F  L  A  G  F  L  G  I  V  A  G  S  G  A  L  S  Q  R  *  Q  K  I  H  D  F  F  V  K  K  K  I  E  L  C  I  *  E  I  *  F  E  *  *  G  G  C  I  Y  R  V  S  </first_frame>
            <second_frame>  I  F   : F  S  L  K  Y  T  Q  L  T  Y  I  L  H  K  P  N  S  G  A   : G  A  G  A  F  A  S  S  A  T  G  A  A  A  G  A  L  S  P  P  Y  W  W  R  *  V  W  A  F  S  T  Y  C  P  I  P  *  V  S  S  N  F  P  Y  F  C  A  A  S  S  T  S  A  A  A  S  A  T  F  L  L  S  I  F  S  E  S  L  L  N  *  L  *  A  A  S  A  N  T  L  A  L  A  K  S  S  V  V  E  P  D  S  S  P  A  F  W  E  S  S  P  A  P  A  L  L  A  N  D  D  R  K  F  M  I  F  L  *  R  R  R  L  N  C  V  Y  E  R  Y  D  L  N  S  K  E  A  V  Y  I  E  S  L </second_frame>
            <third_frame>   S  F  :  F  H  *  N  T  H  N  L  H  T  Y  Y  I  N  P  T  P  A  P  :  A  L  V  L  L  L  L  Q  Q  P  V  R  R  P  E  P  Y  R  H  R  T  G  G  D  K  F  G  P  S  Q  R  T  V  Q  F  L  E  F  R  L  I  F  R  I  S  V  Q  R  R  A  H  R  L  L  L  Q  P  L  F  C  Y  R  F  F  R  N  L  C  *  I  D  S  E  Q  H  L  L  T  L  *  H  W  R  K  A  L  L  S  N  L  I  P  R  R  L  F  G  N  R  R  R  L  R  R  S  *  P  T  M  T  E  N  S  *  F  F  C  E  E  E  D  *  I  V  Y  M  R  D  M  I  *  I  V  R  R  L  Y  I  *  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59123" stop="59170"/>
                    <exon start="59379" stop="59585"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTHNLHTYYINPTPAPALVLLLLQQPVRRPEPYRHRTGGDKFGPSQRTVQFLEFRLIFRISVQRRAHRLLLQPLFCYRFFRNLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="59776" PGL_stop="58957"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59776" e_stop="58957"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="59776" e_stop="58957" e_length="820"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59776" stop="59115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59765" stop="58970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59763" stop="59040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59762" stop="59091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59762" stop="59099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59762" stop="59184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59756" stop="58957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59750" stop="59150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59749" stop="59140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59749" stop="59226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59749" stop="59229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59749" stop="59238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59746" stop="59027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59746" stop="59095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59745" stop="59194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59745" stop="59201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59744" stop="59099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59744" stop="59099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59744" stop="59247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59744" stop="59290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59743" stop="59090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59743" stop="59436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59742" stop="59073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59742" stop="59091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59738" stop="59098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59738" stop="59273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59737" stop="59316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59737" stop="59464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59736" stop="59090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59731" stop="59115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543927" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59730" stop="59348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59728" stop="59361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59727" stop="59099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59727" stop="59243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59727" stop="59476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59726" stop="59099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59723" stop="59196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59715" stop="59319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59715" stop="59515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59698" stop="59311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59689" stop="59090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59677" stop="59080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59580" stop="59099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59527" stop="59115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59508" stop="59115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305247" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59486" stop="59099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59484" stop="59115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59463" stop="59095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59461" stop="59105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59396" stop="59089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59308" stop="59018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309385" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTATTCAAATCATATCTCTCATATACACAATTCAATCTTCTTCTTCACAAAAAAATCATGAATTTTCTGTCATCGTTGGCTAAGAGCGCCGGAGCCGGCGACGATTCCCAAAAAGCCGGCGAGGAATCAGGTTCGACAACAGAGCTTTTCGCCAGTGCTAAAGTGTTAGCAGATGCTGCTCAGAGTCAATTCAACAAAGATTCCGAAAAAATCGATAACAAAAAAGTGGCTGAAGCAGCAGCCGATGTGCTCGACGCTGCACAGAAATACGGAAAATTAGACGAAACTCAAGGAATTGGACAGTACGTTGAGAAGGCCCAAACTTATCTCCACCAGTACGGTGGCGATAAGGCTCCGGCCGCCGCACCGGTTGCTGAAGAAGCAAAAGCACCAGCGCCTGCATCGGAATCGGATCCGGCGCCGGAGCCGGTTGTTGAAGGAGATAAGGAGGAGGAAAAAAAGAGTGAAGGAGCTGATTATCTTAAGATGGCTGGTGATTTCTTAAGCAAGAAGTAATTAGAGTTTAATTAACTTTTTTTAAAATTATGGCTGATGTTATATTTCAGTTTTTTTTTTCTTAATTTGCCACTGTTCACTGCCGGCGCCGGCGCCGGAGTTGGGTTTATGTAATATGTATGTAAGTTGTGTGTATTTCAGTGAAATTTGTGTTTGTTTGAATTTATTAGTGTTATCTTCGTTGCTTCTAGGAAATAAGTCAAGAACAAAGATTAATCTTATTTTTGAGAGAAAAATATCTCATATATATTATGCGTTTTGATTGAAAATGTTATGACTATAAAAAAATTATTACTTATATTT</gDNA_template>
            <first_frame> T  I  Q  I  I  S  L  I  Y  T  I  Q  S  S  S  S  Q  K  N  H  E  F  S  V  I  V  G  *  E  R  R  S  R  R  R  F  P  K  S  R  R  G  I  R  F  D  N  R  A  F  R  Q  C  *  S  V  S  R  C  C  S  E  S  I  Q  Q  R  F  R  K  N  R  *  Q  K  S  G  *  S  S  S  R  C  A  R  R  C  T  E  I  R  K  I  R  R  N  S  R  N  W  T  V  R  *  E  G  P  N  L  S  P  P  V  R  W  R  *  G  S  G  R  R  T  G  C  *  R  S  K  S  T  S  A  C  I  G  I  G  S  G  A  G  A  G  C  *  R  R  *  G  G  G  K  K  E  *  R  S  *  L  S  *  D  G  W  *  F  L  K  Q  E  V  I  R  V  *  L  T  F  F  K  I  M  A  D  V  I  F  Q  F  F  F  S  *  F  A  T  V  H  C  R  R  R  R  R  S  W  V  Y  V  I  C  M  *  V  V  C  I  S  V  K  F  V  F  V  *  I  Y  *  C  Y  L  R  C  F  *  E  I  S  Q  E  Q  R  L  I  L  F  L  R  E  K  Y  L  I  Y  I  M  R  F  D  *  K  C  Y  D  Y  K  K  I  I  T  Y  I  </first_frame>
            <second_frame>  L  F  K  S  Y  L  S  Y  T  Q  F  N  L  L  L  H  K  K  I  M  N  F  L  S  S  L  A  K  S  A  G  A  G  D  D  S  Q  K  A  G  E  E  S  G  S  T  T  E  L  F  A  S  A  K  V  L  A  D  A  A  Q  S  Q  F  N  K  D  S  E  K  I  D  N  K  K  V  A  E  A  A  A  D  V  L  D  A  A  Q  K  Y  G  K  L  D  E  T  Q  G  I  G  Q  Y  V  E  K  A  Q  T  Y  L  H  Q  Y  G  G  D  K  A  P  A  A  A  P  V  A  E  E  A  K  A  P  A  P  A  S  E  S  D  P  A  P  E  P  V  V  E  G  D  K  E  E  E  K  K  S  E  G  A  D  Y  L  K  M  A  G  D  F  L  S  K  K  *  L  E  F  N  *  L  F  L  K  L  W  L  M  L  Y  F  S  F  F  F  L  N  L  P  L  F  T  A  G  A  G  A  G  V  G  F  M  *  Y  V  C  K  L  C  V  F  Q  *  N  L  C  L  F  E  F  I  S  V  I  F  V  A  S  R  K  *  V  K  N  K  D  *  S  Y  F  *  E  K  N  I  S  Y  I  L  C  V  L  I  E  N  V  M  T  I  K  K  L  L  L  I  F </second_frame>
            <third_frame>   Y  S  N  H  I  S  H  I  H  N  S  I  F  F  F  T  K  K  S  *  I  F  C  H  R  W  L  R  A  P  E  P  A  T  I  P  K  K  P  A  R  N  Q  V  R  Q  Q  S  F  S  P  V  L  K  C  *  Q  M  L  L  R  V  N  S  T  K  I  P  K  K  S  I  T  K  K  W  L  K  Q  Q  P  M  C  S  T  L  H  R  N  T  E  N  *  T  K  L  K  E  L  D  S  T  L  R  R  P  K  L  I  S  T  S  T  V  A  I  R  L  R  P  P  H  R  L  L  K  K  Q  K  H  Q  R  L  H  R  N  R  I  R  R  R  S  R  L  L  K  E  I  R  R  R  K  K  R  V  K  E  L  I  I  L  R  W  L  V  I  S  *  A  R  S  N  *  S  L  I  N  F  F  *  N  Y  G  *  C  Y  I  S  V  F  F  F  L  I  C  H  C  S  L  P  A  P  A  P  E  L  G  L  C  N  M  Y  V  S  C  V  Y  F  S  E  I  C  V  C  L  N  L  L  V  L  S  S  L  L  L  G  N  K  S  R  T  K  I  N  L  I  F  E  R  K  I  S  H  I  Y  Y  A  F  *  L  K  M  L  *  L  *  K  N  Y  Y  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59775" stop="59260"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFKSYLSYTQFNLLLHKKIMNFLSSLAKSAGAGDDSQKAGEESGSTTELFASAKVLADAAQSQFNKDSEKIDNKKVAEAAADVLDAAQKYGKLDETQGIGQYVEKAQTYLHQYGGDKAPAAAPVAEEAKAPAPASESDPAPEPVVEGDKEEEKKSEGADYLKMAGDFLSKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59222" stop="58998"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CYISVFFFLICHCSLPAPAPELGLCNMYVSCVYFSEICVCLNLLVLSSLLLGNKSRTKINLIFERKISHIYYAF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="65049" PGL_stop="67938"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65049" e_stop="65279"/>
            <exon e_start="66286" e_stop="66418"/>
            <exon e_start="67119" e_stop="67243"/>
            <exon e_start="67352" e_stop="67498"/>
            <exon e_start="67684" e_stop="67938"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.680" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.942" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65049" e_stop="65279" e_length="231"/>
          </exon>
          <intron i_serial="1" don_prob="0.680" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65280" i_stop="66285" i_length="1006"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66286" e_stop="66418" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="66419" i_stop="67118" i_length="700"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67119" e_stop="67243" e_length="125"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67244" i_stop="67351" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67352" e_stop="67498" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.942">
            <gDNA_intron_boundary i_start="67499" i_stop="67683" i_length="185"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="67684" e_stop="67938" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65049" stop="65279"/>
              <exon start="66286" stop="66418"/>
              <exon start="67119" stop="67243"/>
              <exon start="67352" stop="67498"/>
              <exon start="67684" stop="67938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65049" stop="65279"/>
              <exon start="66286" stop="66418"/>
              <exon start="67119" stop="67243"/>
              <exon start="67352" stop="67498"/>
              <exon start="67684" stop="67894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65054" stop="65279"/>
              <exon start="66286" stop="66418"/>
              <exon start="67119" stop="67243"/>
              <exon start="67352" stop="67498"/>
              <exon start="67684" stop="67913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697251" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCAGCTAAAACCCTACTGATACCCTACCGTCCGTACAAATCCCGGCGTAAATGGAACCGGAAAAATCCTCAGCTCAAATCAAAGACAAAGATTTGTTCAAAGCCGCTGAATCTGGTGATTCATCGCTCTTCAAATCACTTCCTGAAGAACAACTCCTCAAATCCCTCTCTCTCCGTAATGAAGATGATCGTTCTCTCCTTCACGTTGCCGTCTCTTTCGGACACTCTGAG : GTGGTGAAGATTCTTGCAGCTGCTGATCCGTCAGTGAGTGGTATAAATAGTGGTGATGAAGAAGGTTGGGTGCCGTTGCATTCTGCCGCAAGCAGTGGTAATGTGGAAATTGTGGAGATTTTGCTTAGCAGAG : GGGCTGATGTAAATCTGAAAAATGATGGTGGCCGCACTGCTCTTCATTATGCTGCTAGCAAGGGTCAAGTGAAAATAGCTGAACTTTTGATTTCACGTGGTGCTAAGATCAATGCAAAAGACAAG : GTAGGATGCACCCCATTGCATCGTGCAGCTAGCACGGGGAACTCTCAGCTGTGTGAACTATTAGTTGAGGAAGGCGCTGAAGTTGATGAAGTTGACAAGGCAGGGGAAACACCTCTGATGACTGCTGTTGTATGCGGCAATAAAGAG : GTAGCTTTGCTCCTCATAAGACATGGAGCAGATGTTGACATTGAGGACAAGGAAGGGTACACTGTTCTTGGTCGAGCTTCTAATGATCTTCGTCCAGTATTAGTCGATGCTGCAAAGATGATGCTCGAAGGATAAACTCCACGACCTCATGATAGCTCATCAGAAAACGCAAGCCAACTCTGTAAATGTTCAACCTGAAGCGTGCTCAACTAGACACATACCGATGAATATTCTGGAACTATTTAGTTGTAGGGC</gDNA_template>
            <first_frame> A  S  *  N  P  T  D  T  L  P  S  V  Q  I  P  A  *  M  E  P  E  K  S  S  A  Q  I  K  D  K  D  L  F  K  A  A  E  S  G  D  S  S  L  F  K  S  L  P  E  E  Q  L  L  K  S  L  S  L  R  N  E  D  D  R  S  L  L  H  V  A  V  S  F  G  H  S  E  :  V  V  K  I  L  A  A  A  D  P  S  V  S  G  I  N  S  G  D  E  E  G  W  V  P  L  H  S  A  A  S  S  G  N  V  E  I  V  E  I  L  L  S  R   : G  A  D  V  N  L  K  N  D  G  G  R  T  A  L  H  Y  A  A  S  K  G  Q  V  K  I  A  E  L  L  I  S  R  G  A  K  I  N  A  K  D  K  :  V  G  C  T  P  L  H  R  A  A  S  T  G  N  S  Q  L  C  E  L  L  V  E  E  G  A  E  V  D  E  V  D  K  A  G  E  T  P  L  M  T  A  V  V  C  G  N  K  E  :  V  A  L  L  L  I  R  H  G  A  D  V  D  I  E  D  K  E  G  Y  T  V  L  G  R  A  S  N  D  L  R  P  V  L  V  D  A  A  K  M  M  L  E  G  *  T  P  R  P  H  D  S  S  S  E  N  A  S  Q  L  C  K  C  S  T  *  S  V  L  N  *  T  H  T  D  E  Y  S  G  T  I  *  L  *  G </first_frame>
            <second_frame>  P  A  K  T  L  L  I  P  Y  R  P  Y  K  S  R  R  K  W  N  R  K  N  P  Q  L  K  S  K  T  K  I  C  S  K  P  L  N  L  V  I  H  R  S  S  N  H  F  L  K  N  N  S  S  N  P  S  L  S  V  M  K  M  I  V  L  S  F  T  L  P  S  L  S  D  T  L  R :   W  *  R  F  L  Q  L  L  I  R  Q  *  V  V  *  I  V  V  M  K  K  V  G  C  R  C  I  L  P  Q  A  V  V  M  W  K  L  W  R  F  C  L  A  E  :  G  L  M  *  I  *  K  M  M  V  A  A  L  L  F  I  M  L  L  A  R  V  K  *  K  *  L  N  F  *  F  H  V  V  L  R  S  M  Q  K  T  R :   *  D  A  P  H  C  I  V  Q  L  A  R  G  T  L  S  C  V  N  Y  *  L  R  K  A  L  K  L  M  K  L  T  R  Q  G  K  H  L  *  *  L  L  L  Y  A  A  I  K  R :   *  L  C  S  S  *  D  M  E  Q  M  L  T  L  R  T  R  K  G  T  L  F  L  V  E  L  L  M  I  F  V  Q  Y  *  S  M  L  Q  R  *  C  S  K  D  K  L  H  D  L  M  I  A  H  Q  K  T  Q  A  N  S  V  N  V  Q  P  E  A  C  S  T  R  H  I  P  M  N  I  L  E  L  F  S  C  R   </second_frame>
            <third_frame>   Q  L  K  P  Y  *  Y  P  T  V  R  T  N  P  G  V  N  G  T  G  K  I  L  S  S  N  Q  R  Q  R  F  V  Q  S  R  *  I  W  *  F  I  A  L  Q  I  T  S  *  R  T  T  P  Q  I  P  L  S  P  *  *  R  *  S  F  S  P  S  R  C  R  L  F  R  T  L  *   : G  G  E  D  S  C  S  C  *  S  V  S  E  W  Y  K  *  W  *  *  R  R  L  G  A  V  A  F  C  R  K  Q  W  *  C  G  N  C  G  D  F  A  *  Q  R :   G  *  C  K  S  E  K  *  W  W  P  H  C  S  S  L  C  C  *  Q  G  S  S  E  N  S  *  T  F  D  F  T  W  C  *  D  Q  C  K  R  Q   : G  R  M  H  P  I  A  S  C  S  *  H  G  E  L  S  A  V  *  T  I  S  *  G  R  R  *  S  *  *  S  *  Q  G  R  G  N  T  S  D  D  C  C  C  M  R  Q  *  R   : G  S  F  A  P  H  K  T  W  S  R  C  *  H  *  G  Q  G  R  V  H  C  S  W  S  S  F  *  *  S  S  S  S  I  S  R  C  C  K  D  D  A  R  R  I  N  S  T  T  S  *  *  L  I  R  K  R  K  P  T  L  *  M  F  N  L  K  R  A  Q  L  D  T  Y  R  *  I  F  W  N  Y  L  V  V  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65100" stop="65279"/>
                    <exon start="66286" stop="66418"/>
                    <exon start="67119" stop="67243"/>
                    <exon start="67352" stop="67498"/>
                    <exon start="67684" stop="67818"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MEPEKSSAQIKDKDLFKAAESGDSSLFKSLPEEQLLKSLSLRNEDDRSLLHVAVSFGHSEVVKILAAADPSVSGINSGDEEGWVPLHSAASSGNVEIVEILLSRGADVNLKNDGGRTALHYAASKGQVKIAELLISRGAKINAKDKVGCTPLHRAASTGNSQLCELLVEEGAEVDEVDKAGETPLMTAVVCGNKEVALLLIRHGADVDIEDKEGYTVLGRASNDLRPVLVDAAKMMLEG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="68956" PGL_stop="70678"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68956" e_stop="69226"/>
            <exon e_start="69622" e_stop="69711"/>
            <exon e_start="69791" e_stop="69887"/>
            <exon e_start="70068" e_stop="70470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68956" e_stop="69226" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="69227" i_stop="69621" i_length="395"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69622" e_stop="69711" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.989">
            <gDNA_intron_boundary i_start="69712" i_stop="69790" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69791" e_stop="69887" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.991">
            <gDNA_intron_boundary i_start="69888" i_stop="70067" i_length="180"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70068" e_stop="70470" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68956" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69887"/>
              <exon start="70068" stop="70449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68957" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69887"/>
              <exon start="70068" stop="70292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68957" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69887"/>
              <exon start="70068" stop="70279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68957" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69887"/>
              <exon start="70068" stop="70173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68957" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68957" stop="69226"/>
              <exon start="69622" stop="69640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68965" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69887"/>
              <exon start="70068" stop="70292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68967" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69887"/>
              <exon start="70068" stop="70150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69017" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280875" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69025" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69887"/>
              <exon start="70068" stop="70422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69047" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69887"/>
              <exon start="70068" stop="70470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69047" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69887"/>
              <exon start="70068" stop="70300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69047" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69887"/>
              <exon start="70068" stop="70295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251471" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTCTTGTGCTTCCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCAGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTG : CTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACG : ATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAA : GAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTTGAAGCAGAAGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTCTTTATCGATGATGCTGGTTTCAATTTCCGAATGCAGAGAGTGAAGATTGAAGCGTAATGCTGAAAATTCGCGATAGGAGACGGGGAGTTTGATTGAGCCTTATAACCTGTTAGTATTAGCATAAGCACAAGAACATGTCAAAAGGGACATTTCTTCTATTGTTCTATAGCTTGTAAATACATTGCACTAGTAAATTATGAGCTTGAGAGTGGCATATTGATAGCGTCTGATATACCGTCAACT</gDNA_template>
            <first_frame> V  F  L  C  F  P  I  F  F  F  Y  Y  Y  F  L  V  *  W  K  Q  S  K  S  R  I  M  T  M  A  T  P  I  S  P  M  K  Q  F  P  S  T  A  L  Q  P  F  P  S  I  F  Q  R  K  P  V  L  I  S  S  L  R  K  T  P  H  L  F  S  Y  S  S  P  K  S  F  V  P  L  S  A  C  L  A  V  L  L  W  S  S  P   : A  N  A  G  F  L  S  G  Y  T  G  I  E  S  V  P  G  P  E  L  P  K  I  E  F  L  N  R  W  N   : D  N  N  Q  K  K  Y  A  E  L  D  E  K  F  K  E  S  P  L  L  K  Q  L  L  E  K  S  K  Q  N  K  E  K :   N  K  R  S  I  E  D  K  Y  C  L  R  G  A  E  W  G  V  G  D  C  S  T  A  G  M  T  P  E  D  R  D  S  F  I  A  M  L  K  Q  K  A  G  V  E  *  T  R  N  Y  V  L  L  F  I  D  D  A  G  F  N  F  R  M  Q  R  V  K  I  E  A  *  C  *  K  F  A  I  G  D  G  E  F  D  *  A  L  *  P  V  S  I  S  I  S  T  R  T  C  Q  K  G  H  F  F  Y  C  S  I  A  C  K  Y  I  A  L  V  N  Y  E  L  E  S  G  I  L  I  A  S  D  I  P  S  T </first_frame>
            <second_frame>  F  S  C  A  S  L  S  S  S  S  T  T  T  F  W  S  S  G  S  R  A  K  A  E  L  *  L  W  L  L  L  F  L  Q  *  S  N  S  L  Q  L  L  F  N  H  S  H  Q  S  F  K  E  N  Q  Y  *  S  L  H  L  E  K  L  L  I  F  S  L  I  H  L  P  S  H  S  F  R  F  L  L  A  L  L  F  F  Y  G  P  L  L  :  L  M  L  D  F  F  R  V  I  L  V  *  N  Q  F  L  A  L  N  Y  L  R  L  S  F  L  I  V  G  T  :  I  I  I  R  K  S  M  Q  N  S  M  K  N  S  K  S  R  L  C  L  N  S  Y  S  K  N  P  S  K  I  K  R   : R  T  K  G  Q  L  K  T  S  I  V  Y  A  E  L  N  G  E  L  E  I  A  Q  Q  Q  E  *  H  Q  K  T  E  I  A  S  L  P  C  *  S  R  R  L  V  *  N  E  R  A  I  M  Y  Y  S  L  S  M  M  L  V  S  I  S  E  C  R  E  *  R  L  K  R  N  A  E  N  S  R  *  E  T  G  S  L  I  E  P  Y  N  L  L  V  L  A  *  A  Q  E  H  V  K  R  D  I  S  S  I  V  L  *  L  V  N  T  L  H  *  *  I  M  S  L  R  V  A  Y  *  *  R  L  I  Y  R  Q   </second_frame>
            <third_frame>   F  L  V  L  P  Y  L  L  L  L  L  L  L  F  G  L  V  E  A  E  Q  K  Q  N  Y  D  Y  G  Y  S  Y  F  S  N  E  A  I  P  F  N  C  S  S  T  I  P  I  N  L  S  K  K  T  S  T  N  L  F  T  *  K  N  S  S  S  F  L  L  F  I  S  Q  V  I  R  S  A  F  C  L  P  C  C  S  S  M  V  L  S  C :   *  C  W  I  S  F  G  L  Y  W  Y  R  I  S  S  W  P  *  I  T  *  D  *  V  S  *  S  L  E  R :   *  *  S  E  K  V  C  R  T  R  *  K  I  Q  R  V  A  F  A  *  T  V  T  R  K  I  Q  A  K  *  R  E  :  E  Q  K  V  N  *  R  Q  V  L  F  T  R  S  *  M  G  S  W  R  L  L  N  S  R  N  D  T  R  R  Q  R  *  L  H  C  H  V  E  A  E  G  W  C  R  M  N  A  Q  L  C  T  T  L  Y  R  *  C  W  F  Q  F  P  N  A  E  S  E  D  *  S  V  M  L  K  I  R  D  R  R  R  G  V  *  L  S  L  I  T  C  *  Y  *  H  K  H  K  N  M  S  K  G  T  F  L  L  L  F  Y  S  L  *  I  H  C  T  S  K  L  *  A  *  E  W  H  I  D  S  V  *  Y  T  V  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69007" stop="69226"/>
                    <exon start="69622" stop="69711"/>
                    <exon start="69791" stop="69887"/>
                    <exon start="70068" stop="70206"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WKQSKSRIMTMATPISPMKQFPSTALQPFPSIFQRKPVLISSLRKTPHLFSYSSPKSFVPLSACLAVLLWSSPANAGFLSGYTGIESVPGPELPKIEFLNRWNDNNQKKYAELDEKFKESPLLKQLLEKSKQNKEKNKRSIEDKYCLRGAEWGVGDCSTAGMTPEDRDSFIAMLKQKAGVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="68957" e_stop="69226"/>
            <exon e_start="69622" e_stop="69711"/>
            <exon e_start="69791" e_stop="69887"/>
            <exon e_start="70068" e_stop="70442"/>
            <exon e_start="70663" e_stop="70678"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.591" e_score="0.997"/>
          <exon-only e_score="0.688"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68957" e_stop="69226" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="69227" i_stop="69621" i_length="395"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69622" e_stop="69711" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.989">
            <gDNA_intron_boundary i_start="69712" i_stop="69790" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69791" e_stop="69887" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.991">
            <gDNA_intron_boundary i_start="69888" i_stop="70067" i_length="180"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="70068" e_stop="70442" e_length="375"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.591">
            <gDNA_intron_boundary i_start="70443" i_stop="70662" i_length="220"/>
          </intron>
          <exon e_serial="5" e_score="0.688">
            <gDNA_exon_boundary e_start="70663" e_stop="70678" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68957" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69887"/>
              <exon start="70068" stop="70292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68957" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69887"/>
              <exon start="70068" stop="70279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68957" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69887"/>
              <exon start="70068" stop="70173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68957" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68957" stop="69226"/>
              <exon start="69622" stop="69640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68965" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69887"/>
              <exon start="70068" stop="70292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68967" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69887"/>
              <exon start="70068" stop="70150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69017" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280875" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69025" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69887"/>
              <exon start="70068" stop="70422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69047" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69887"/>
              <exon start="70068" stop="70300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69047" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69887"/>
              <exon start="70068" stop="70295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69139" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69887"/>
              <exon start="70068" stop="70442"/>
              <exon start="70663" stop="70678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373108" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTTGTGCTTCCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCAGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTG : CTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACG : ATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAA : GAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTTGAAGCAGAAGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTCTTTATCGATGATGCTGGTTTCAATTTCCGAATGCAGAGAGTGAAGATTGAAGCGTAATGCTGAAAATTCGCGATAGGAGACGGGGAGTTTGATTGAGCCTTATAACCTGTTAGTATTAGCATAAGCACAAGAACATGTCAAAAGGGACATTTCTTCTATTGTTCTATAGCTTGTAAATACATTGCACTAGTAAATTATGAGCTTGAGAGTGGCAT : TGTAAAAATAAGAGAA</gDNA_template>
            <first_frame> F  S  C  A  S  L  S  S  S  S  T  T  T  F  W  S  S  G  S  R  A  K  A  E  L  *  L  W  L  L  L  F  L  Q  *  S  N  S  L  Q  L  L  F  N  H  S  H  Q  S  F  K  E  N  Q  Y  *  S  L  H  L  E  K  L  L  I  F  S  L  I  H  L  P  S  H  S  F  R  F  L  L  A  L  L  F  F  Y  G  P  L  L  :  L  M  L  D  F  F  R  V  I  L  V  *  N  Q  F  L  A  L  N  Y  L  R  L  S  F  L  I  V  G  T  :  I  I  I  R  K  S  M  Q  N  S  M  K  N  S  K  S  R  L  C  L  N  S  Y  S  K  N  P  S  K  I  K  R   : R  T  K  G  Q  L  K  T  S  I  V  Y  A  E  L  N  G  E  L  E  I  A  Q  Q  Q  E  *  H  Q  K  T  E  I  A  S  L  P  C  *  S  R  R  L  V  *  N  E  R  A  I  M  Y  Y  S  L  S  M  M  L  V  S  I  S  E  C  R  E  *  R  L  K  R  N  A  E  N  S  R  *  E  T  G  S  L  I  E  P  Y  N  L  L  V  L  A  *  A  Q  E  H  V  K  R  D  I  S  S  I  V  L  *  L  V  N  T  L  H  *  *  I  M  S  L  R  V  A   : L  *  K  *  E   </first_frame>
            <second_frame>  F  L  V  L  P  Y  L  L  L  L  L  L  L  F  G  L  V  E  A  E  Q  K  Q  N  Y  D  Y  G  Y  S  Y  F  S  N  E  A  I  P  F  N  C  S  S  T  I  P  I  N  L  S  K  K  T  S  T  N  L  F  T  *  K  N  S  S  S  F  L  L  F  I  S  Q  V  I  R  S  A  F  C  L  P  C  C  S  S  M  V  L  S  C :   *  C  W  I  S  F  G  L  Y  W  Y  R  I  S  S  W  P  *  I  T  *  D  *  V  S  *  S  L  E  R :   *  *  S  E  K  V  C  R  T  R  *  K  I  Q  R  V  A  F  A  *  T  V  T  R  K  I  Q  A  K  *  R  E  :  E  Q  K  V  N  *  R  Q  V  L  F  T  R  S  *  M  G  S  W  R  L  L  N  S  R  N  D  T  R  R  Q  R  *  L  H  C  H  V  E  A  E  G  W  C  R  M  N  A  Q  L  C  T  T  L  Y  R  *  C  W  F  Q  F  P  N  A  E  S  E  D  *  S  V  M  L  K  I  R  D  R  R  R  G  V  *  L  S  L  I  T  C  *  Y  *  H  K  H  K  N  M  S  K  G  T  F  L  L  L  F  Y  S  L  *  I  H  C  T  S  K  L  *  A  *  E  W  H  :  C  K  N  K  R  </second_frame>
            <third_frame>   F  L  C  F  P  I  F  F  F  Y  Y  Y  F  L  V  *  W  K  Q  S  K  S  R  I  M  T  M  A  T  P  I  S  P  M  K  Q  F  P  S  T  A  L  Q  P  F  P  S  I  F  Q  R  K  P  V  L  I  S  S  L  R  K  T  P  H  L  F  S  Y  S  S  P  K  S  F  V  P  L  S  A  C  L  A  V  L  L  W  S  S  P   : A  N  A  G  F  L  S  G  Y  T  G  I  E  S  V  P  G  P  E  L  P  K  I  E  F  L  N  R  W  N   : D  N  N  Q  K  K  Y  A  E  L  D  E  K  F  K  E  S  P  L  L  K  Q  L  L  E  K  S  K  Q  N  K  E  K :   N  K  R  S  I  E  D  K  Y  C  L  R  G  A  E  W  G  V  G  D  C  S  T  A  G  M  T  P  E  D  R  D  S  F  I  A  M  L  K  Q  K  A  G  V  E  *  T  R  N  Y  V  L  L  F  I  D  D  A  G  F  N  F  R  M  Q  R  V  K  I  E  A  *  C  *  K  F  A  I  G  D  G  E  F  D  *  A  L  *  P  V  S  I  S  I  S  T  R  T  C  Q  K  G  H  F  F  Y  C  S  I  A  C  K  Y  I  A  L  V  N  Y  E  L  E  S  G  I :   V  K  I  R  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69007" stop="69226"/>
                    <exon start="69622" stop="69711"/>
                    <exon start="69791" stop="69887"/>
                    <exon start="70068" stop="70206"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WKQSKSRIMTMATPISPMKQFPSTALQPFPSIFQRKPVLISSLRKTPHLFSYSSPKSFVPLSACLAVLLWSSPANAGFLSGYTGIESVPGPELPKIEFLNRWNDNNQKKYAELDEKFKESPLLKQLLEKSKQNKEKNKRSIEDKYCLRGAEWGVGDCSTAGMTPEDRDSFIAMLKQKAGVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="75306" PGL_stop="83765"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75306" e_stop="75449"/>
            <exon e_start="75846" e_stop="76286"/>
            <exon e_start="77347" e_stop="77424"/>
            <exon e_start="77705" e_stop="77760"/>
            <exon e_start="79133" e_stop="79252"/>
            <exon e_start="79408" e_stop="79478"/>
            <exon e_start="79684" e_stop="79777"/>
            <exon e_start="79878" e_stop="80087"/>
            <exon e_start="81143" e_stop="81394"/>
            <exon e_start="81676" e_stop="81784"/>
            <exon e_start="81913" e_stop="81980"/>
            <exon e_start="82519" e_stop="82588"/>
            <exon e_start="82695" e_stop="82769"/>
            <exon e_start="82884" e_stop="82975"/>
            <exon e_start="83446" e_stop="83765"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.812" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.989" e_score="0.987"/>
          <exon-intron don_prob="0.614" acc_prob="0.509" e_score="1.000"/>
          <exon-intron don_prob="0.706" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.778" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75306" e_stop="75449" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.991">
            <gDNA_intron_boundary i_start="75450" i_stop="75845" i_length="396"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75846" e_stop="76286" e_length="441"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="76287" i_stop="77346" i_length="1060"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77347" e_stop="77424" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="77425" i_stop="77704" i_length="280"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77705" e_stop="77760" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.935">
            <gDNA_intron_boundary i_start="77761" i_stop="79132" i_length="1372"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79133" e_stop="79252" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.812" acc_prob="0.980">
            <gDNA_intron_boundary i_start="79253" i_stop="79407" i_length="155"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79408" e_stop="79478" e_length="71"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="79479" i_stop="79683" i_length="205"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="79684" e_stop="79777" e_length="94"/>
          </exon>
          <intron i_serial="7" don_prob="0.900" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79778" i_stop="79877" i_length="100"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="79878" e_stop="80087" e_length="210"/>
          </exon>
          <intron i_serial="8" don_prob="0.834" acc_prob="0.917">
            <gDNA_intron_boundary i_start="80088" i_stop="81142" i_length="1055"/>
          </intron>
          <exon e_serial="9" e_score="0.987">
            <gDNA_exon_boundary e_start="81143" e_stop="81394" e_length="252"/>
          </exon>
          <intron i_serial="9" don_prob="0.990" acc_prob="0.989">
            <gDNA_intron_boundary i_start="81395" i_stop="81675" i_length="281"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="81676" e_stop="81784" e_length="109"/>
          </exon>
          <intron i_serial="10" don_prob="0.614" acc_prob="0.509">
            <gDNA_intron_boundary i_start="81785" i_stop="81912" i_length="128"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="81913" e_stop="81980" e_length="68"/>
          </exon>
          <intron i_serial="11" don_prob="0.706" acc_prob="0.992">
            <gDNA_intron_boundary i_start="81981" i_stop="82518" i_length="538"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="82519" e_stop="82588" e_length="70"/>
          </exon>
          <intron i_serial="12" don_prob="0.778" acc_prob="0.995">
            <gDNA_intron_boundary i_start="82589" i_stop="82694" i_length="106"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="82695" e_stop="82769" e_length="75"/>
          </exon>
          <intron i_serial="13" don_prob="0.995" acc_prob="0.820">
            <gDNA_intron_boundary i_start="82770" i_stop="82883" i_length="114"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="82884" e_stop="82975" e_length="92"/>
          </exon>
          <intron i_serial="14" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="82976" i_stop="83445" i_length="470"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="83446" e_stop="83765" e_length="320"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75306" stop="75449"/>
              <exon start="75846" stop="76150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75306" stop="75449"/>
              <exon start="75846" stop="76150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75313" stop="75449"/>
              <exon start="75846" stop="76286"/>
              <exon start="77347" stop="77382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75316" stop="75449"/>
              <exon start="75846" stop="76286"/>
              <exon start="77347" stop="77424"/>
              <exon start="77705" stop="77760"/>
              <exon start="79133" stop="79222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75317" stop="75449"/>
              <exon start="75846" stop="76286"/>
              <exon start="77347" stop="77367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75419" stop="75449"/>
              <exon start="75846" stop="76286"/>
              <exon start="77347" stop="77424"/>
              <exon start="77705" stop="77760"/>
              <exon start="79133" stop="79252"/>
              <exon start="79408" stop="79431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75877" stop="76286"/>
              <exon start="77347" stop="77424"/>
              <exon start="77705" stop="77755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76121" stop="76286"/>
              <exon start="77347" stop="77424"/>
              <exon start="77705" stop="77760"/>
              <exon start="79133" stop="79252"/>
              <exon start="79408" stop="79478"/>
              <exon start="79684" stop="79777"/>
              <exon start="79878" stop="79904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76131" stop="76286"/>
              <exon start="77347" stop="77424"/>
              <exon start="77705" stop="77760"/>
              <exon start="79133" stop="79195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76135" stop="76286"/>
              <exon start="77347" stop="77424"/>
              <exon start="77705" stop="77760"/>
              <exon start="79133" stop="79252"/>
              <exon start="79408" stop="79478"/>
              <exon start="79684" stop="79777"/>
              <exon start="79878" stop="79910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76188" stop="76286"/>
              <exon start="77347" stop="77424"/>
              <exon start="77705" stop="77760"/>
              <exon start="79133" stop="79252"/>
              <exon start="79408" stop="79478"/>
              <exon start="79684" stop="79691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76233" stop="76286"/>
              <exon start="77347" stop="77424"/>
              <exon start="77705" stop="77760"/>
              <exon start="79133" stop="79252"/>
              <exon start="79408" stop="79478"/>
              <exon start="79684" stop="79704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76267" stop="76286"/>
              <exon start="77347" stop="77424"/>
              <exon start="77705" stop="77760"/>
              <exon start="79133" stop="79252"/>
              <exon start="79408" stop="79478"/>
              <exon start="79684" stop="79777"/>
              <exon start="79878" stop="79994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77710" stop="77760"/>
              <exon start="79133" stop="79252"/>
              <exon start="79408" stop="79478"/>
              <exon start="79684" stop="79777"/>
              <exon start="79878" stop="80087"/>
              <exon start="81143" stop="81200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77732" stop="77760"/>
              <exon start="79133" stop="79252"/>
              <exon start="79408" stop="79478"/>
              <exon start="79684" stop="79777"/>
              <exon start="79878" stop="80087"/>
              <exon start="81143" stop="81193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79176" stop="79252"/>
              <exon start="79408" stop="79478"/>
              <exon start="79684" stop="79777"/>
              <exon start="79878" stop="80087"/>
              <exon start="81143" stop="81368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79411" stop="79478"/>
              <exon start="79684" stop="79777"/>
              <exon start="79878" stop="80087"/>
              <exon start="81143" stop="81211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81345" stop="81394"/>
              <exon start="81676" stop="81784"/>
              <exon start="81913" stop="81980"/>
              <exon start="82519" stop="82588"/>
              <exon start="82695" stop="82769"/>
              <exon start="82884" stop="82975"/>
              <exon start="83446" stop="83759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82585" stop="82588"/>
              <exon start="82695" stop="82769"/>
              <exon start="82884" stop="82975"/>
              <exon start="83446" stop="83761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288999" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82586" stop="82588"/>
              <exon start="82695" stop="82769"/>
              <exon start="82884" stop="82975"/>
              <exon start="83446" stop="83765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331805" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAGGGAGTCCCGATTTTGGCTATAGCTCATTTTTTGGACCCCACCCCTCCAGCACAATTCCCTCCTATTGCCAACCTAGCTTGTTGTCTTGTTGAAATTTCACATCCATTCACAGGTGATTTTCTTGAAGAATTCTCAAAGG : GGGATTTGATTCTTTTGGTGGAAACGTGGGGTTACTGAATTTTTTCAGTATGTGTTTGACTTTAGCTGTTATCGAACAAAGGAGAATATTCTGTTCTTTATGAAGGAATAGGAGTGAGATTCGAGTTAAGAGAAGGAAATTATGTATCGGCCTGTAGCAACTACTACCCGAGGAGGGGTACCAACTGATAGTGGAGATTCTGTGGTGACACTGGATCAAGTTCCACGTTGGATTGATTCTGACATTAGGTACTTGTATGAGAATGAAGACCCTAATTCCGACTATGCAGATCCTTTGTCATCTGCTTCAGGGTCTGAGGGCAATGCGAATGGTATTGTTTCCAAGTTTCCTGTGGATCATGAGATTAACTCCAAGATATACCTGTGGAGAGGAGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACAAATGAG : AATTTAGATGAAGCACACAGCAGCCCTGGATTGCATGCTGCAGCTGGACCTGGACTTGCAGAGGAATGTGCTACACTC : GGAGGATGCCGGACAGGAATGGCAAAAGTTACCAATGCTTATGATCTCCCTGCTAG : GAGGGTCATTCACACTGTTGGTCCGAAGTATGCGGTAAAATACCACACTGCTGCCGAGAACGCTCTAAGTCATTGCTATCGCTCTTGCCTTGAACTTCTTATAGAAAATGGATTACAGAG : CATTGCGATGGGCTGTATCTATACCGAAGCCAAAAATTACCCGCGAGAACCTGCTGCTCATGTTGCAATAA : GAACTGTACGGCGGTTTCTTGAGAAACAGAAAGATAAAATAGAGGCAGTCGTTTTCTGTACAACTACATCATCCGATACGGAGATATATAAAAG : ATTGCTTCCTCTTTACTTCCCCCGGGATAATCATGAGGAAGAAATTGCCCGGTTAAAACTTCCTGCAGATGTTGGGGATGAGAATGGAGAGACAACTACTGCTGAGCGTAAAATAAGAATAAAACCATTGCCAAATTCAAAAGTTTCTAGTCCAAGGACCCCCCAAGCATCTGTTGATCTATCTGTCAGTAATCTTGGTTTGTCCAGAAG : GAGTTCATCCTACTTGGATGCATTTCTGGATCCTGCTTTTATGTCCCTGATCAAAGACCCAGATCAGCGACGTAAAGAACAATGGGAAAAAACAGCCCAAGCGCAAAATAATTGGAACTGCTTCAAAATGCTTGGATATGGTGACCTTGGGGGACCTGCTTTATCAGCTGCAGAAGAATATACCCTTCATTCTAGATATCTTGCAAAAGCGAATTCTATGAATCTTTCAGAAATTGCGGAAATGAAAATCGT : TTACCGAGGAGGGGTTGATAGTGAGGGTCGTCCAGTTATGGTAGTCGTGGGAGCACATTTCCTGCTAAGATGTCTTGATCTTGAGAGATTTACCCTGTACGTTGTAAAG : GAGTTCGAGCCTGTGATTCAGAAGCCTTACTCAATAGTGTATTTACATTCTGCAGCGTCTTTACAGAT : GCAACCAGATTTAGGCTGGATGAAGAGATTACAACAAATACTTGGACGGAAACACCAGCGTAACCTTCAT : GCAATATACGTGCTTCACCCTACCTTTGGACTGAAGTCTGCAATTTTTGCTTTGCAACTCTTCGTCGATAATGTG : GTGTGGAAAAAAGTAGTATATCTTGATCGTCTTCTACAGCTATTCCGCTATGTTCCTCGTGAACAGTTAACTATTCCTGACTTTGTATTCCA : GCATGATTTGGAAGTGAATGGAGGGAAGGGCCTAATCGTTGATCCGAGAACAAAATATGTTTATCAGAGACCTTAGTGTCCATATCCATGAGCTAAAAGATTCATCAGTTAAACCAGCTATGGAGCAAATTGTGAGATAATGAAGCTGGGTTATCTCTTGTTAATTTCTCTGTTGTTTGTAAAATTTTATTTGTTGATTAATTTGTGCAGACAATGTTGTCTTGCCTCCTGTGGCAATAAAATGACCCCCTCCCCTATCGTTTTCCATGTAATGAATGTATATTTTATTTAGAATTTGATTTTATATTTAGTCGACATTA</gDNA_template>
            <first_frame> Q  R  E  S  R  F  W  L  *  L  I  F  W  T  P  P  L  Q  H  N  S  L  L  L  P  T  *  L  V  V  L  L  K  F  H  I  H  S  Q  V  I  F  L  K  N  S  Q  R  :  G  I  *  F  F  W  W  K  R  G  V  T  E  F  F  Q  Y  V  F  D  F  S  C  Y  R  T  K  E  N  I  L  F  F  M  K  E  *  E  *  D  S  S  *  E  K  E  I  M  Y  R  P  V  A  T  T  T  R  G  G  V  P  T  D  S  G  D  S  V  V  T  L  D  Q  V  P  R  W  I  D  S  D  I  R  Y  L  Y  E  N  E  D  P  N  S  D  Y  A  D  P  L  S  S  A  S  G  S  E  G  N  A  N  G  I  V  S  K  F  P  V  D  H  E  I  N  S  K  I  Y  L  W  R  G  D  P  W  N  L  E  V  D  A  V  V  N  S  T  N  E  :  N  L  D  E  A  H  S  S  P  G  L  H  A  A  A  G  P  G  L  A  E  E  C  A  T  L  :  G  G  C  R  T  G  M  A  K  V  T  N  A  Y  D  L  P  A  R :   R  V  I  H  T  V  G  P  K  Y  A  V  K  Y  H  T  A  A  E  N  A  L  S  H  C  Y  R  S  C  L  E  L  L  I  E  N  G  L  Q  S :   I  A  M  G  C  I  Y  T  E  A  K  N  Y  P  R  E  P  A  A  H  V  A  I   : R  T  V  R  R  F  L  E  K  Q  K  D  K  I  E  A  V  V  F  C  T  T  T  S  S  D  T  E  I  Y  K  R :   L  L  P  L  Y  F  P  R  D  N  H  E  E  E  I  A  R  L  K  L  P  A  D  V  G  D  E  N  G  E  T  T  T  A  E  R  K  I  R  I  K  P  L  P  N  S  K  V  S  S  P  R  T  P  Q  A  S  V  D  L  S  V  S  N  L  G  L  S  R  R :   S  S  S  Y  L  D  A  F  L  D  P  A  F  M  S  L  I  K  D  P  D  Q  R  R  K  E  Q  W  E  K  T  A  Q  A  Q  N  N  W  N  C  F  K  M  L  G  Y  G  D  L  G  G  P  A  L  S  A  A  E  E  Y  T  L  H  S  R  Y  L  A  K  A  N  S  M  N  L  S  E  I  A  E  M  K  I  V :   Y  R  G  G  V  D  S  E  G  R  P  V  M  V  V  V  G  A  H  F  L  L  R  C  L  D  L  E  R  F  T  L  Y  V  V  K  :  E  F  E  P  V  I  Q  K  P  Y  S  I  V  Y  L  H  S  A  A  S  L  Q  M :   Q  P  D  L  G  W  M  K  R  L  Q  Q  I  L  G  R  K  H  Q  R  N  L  H  :  A  I  Y  V  L  H  P  T  F  G  L  K  S  A  I  F  A  L  Q  L  F  V  D  N  V  :  V  W  K  K  V  V  Y  L  D  R  L  L  Q  L  F  R  Y  V  P  R  E  Q  L  T  I  P  D  F  V  F  Q :   H  D  L  E  V  N  G  G  K  G  L  I  V  D  P  R  T  K  Y  V  Y  Q  R  P  *  C  P  Y  P  *  A  K  R  F  I  S  *  T  S  Y  G  A  N  C  E  I  M  K  L  G  Y  L  L  L  I  S  L  L  F  V  K  F  Y  L  L  I  N  L  C  R  Q  C  C  L  A  S  C  G  N  K  M  T  P  S  P  I  V  F  H  V  M  N  V  Y  F  I  *  N  L  I  L  Y  L  V  D  I  </first_frame>
            <second_frame>  K  G  S  P  D  F  G  Y  S  S  F  F  G  P  H  P  S  S  T  I  P  S  Y  C  Q  P  S  L  L  S  C  *  N  F  T  S  I  H  R  *  F  S  *  R  I  L  K  G :   G  F  D  S  F  G  G  N  V  G  L  L  N  F  F  S  M  C  L  T  L  A  V  I  E  Q  R  R  I  F  C  S  L  *  R  N  R  S  E  I  R  V  K  R  R  K  L  C  I  G  L  *  Q  L  L  P  E  E  G  Y  Q  L  I  V  E  I  L  W  *  H  W  I  K  F  H  V  G  L  I  L  T  L  G  T  C  M  R  M  K  T  L  I  P  T  M  Q  I  L  C  H  L  L  Q  G  L  R  A  M  R  M  V  L  F  P  S  F  L  W  I  M  R  L  T  P  R  Y  T  C  G  E  E  T  P  G  I  S  R  *  M  L  L  L  T  L  Q  M  R :   I  *  M  K  H  T  A  A  L  D  C  M  L  Q  L  D  L  D  L  Q  R  N  V  L  H  S :   E  D  A  G  Q  E  W  Q  K  L  P  M  L  M  I  S  L  L   : G  G  S  F  T  L  L  V  R  S  M  R  *  N  T  T  L  L  P  R  T  L  *  V  I  A  I  A  L  A  L  N  F  L  *  K  M  D  Y  R   : A  L  R  W  A  V  S  I  P  K  P  K  I  T  R  E  N  L  L  L  M  L  Q  *  :  E  L  Y  G  G  F  L  R  N  R  K  I  K  *  R  Q  S  F  S  V  Q  L  H  H  P  I  R  R  Y  I  K   : D  C  F  L  F  T  S  P  G  I  I  M  R  K  K  L  P  G  *  N  F  L  Q  M  L  G  M  R  M  E  R  Q  L  L  L  S  V  K  *  E  *  N  H  C  Q  I  Q  K  F  L  V  Q  G  P  P  K  H  L  L  I  Y  L  S  V  I  L  V  C  P  E   : G  V  H  P  T  W  M  H  F  W  I  L  L  L  C  P  *  S  K  T  Q  I  S  D  V  K  N  N  G  K  K  Q  P  K  R  K  I  I  G  T  A  S  K  C  L  D  M  V  T  L  G  D  L  L  Y  Q  L  Q  K  N  I  P  F  I  L  D  I  L  Q  K  R  I  L  *  I  F  Q  K  L  R  K  *  K  S   : F  T  E  E  G  L  I  V  R  V  V  Q  L  W  *  S  W  E  H  I  S  C  *  D  V  L  I  L  R  D  L  P  C  T  L  *  R :   S  S  S  L  *  F  R  S  L  T  Q  *  C  I  Y  I  L  Q  R  L  Y  R   : C  N  Q  I  *  A  G  *  R  D  Y  N  K  Y  L  D  G  N  T  S  V  T  F  M :   Q  Y  T  C  F  T  L  P  L  D  *  S  L  Q  F  L  L  C  N  S  S  S  I  M  W :   C  G  K  K  *  Y  I  L  I  V  F  Y  S  Y  S  A  M  F  L  V  N  S  *  L  F  L  T  L  Y  S   : S  M  I  W  K  *  M  E  G  R  A  *  S  L  I  R  E  Q  N  M  F  I  R  D  L  S  V  H  I  H  E  L  K  D  S  S  V  K  P  A  M  E  Q  I  V  R  *  *  S  W  V  I  S  C  *  F  L  C  C  L  *  N  F  I  C  *  L  I  C  A  D  N  V  V  L  P  P  V  A  I  K  *  P  P  P  L  S  F  S  M  *  *  M  Y  I  L  F  R  I  *  F  Y  I  *  S  T  L </second_frame>
            <third_frame>   K  G  V  P  I  L  A  I  A  H  F  L  D  P  T  P  P  A  Q  F  P  P  I  A  N  L  A  C  C  L  V  E  I  S  H  P  F  T  G  D  F  L  E  E  F  S  K   : G  D  L  I  L  L  V  E  T  W  G  Y  *  I  F  S  V  C  V  *  L  *  L  L  S  N  K  G  E  Y  S  V  L  Y  E  G  I  G  V  R  F  E  L  R  E  G  N  Y  V  S  A  C  S  N  Y  Y  P  R  R  G  T  N  *  *  W  R  F  C  G  D  T  G  S  S  S  T  L  D  *  F  *  H  *  V  L  V  *  E  *  R  P  *  F  R  L  C  R  S  F  V  I  C  F  R  V  *  G  Q  C  E  W  Y  C  F  Q  V  S  C  G  S  *  D  *  L  Q  D  I  P  V  E  R  R  P  L  E  S  R  G  R  C  C  C  *  L  Y  K  *   : E  F  R  *  S  T  Q  Q  P  W  I  A  C  C  S  W  T  W  T  C  R  G  M  C  Y  T   : R  R  M  P  D  R  N  G  K  S  Y  Q  C  L  *  S  P  C  *  :  E  G  H  S  H  C  W  S  E  V  C  G  K  I  P  H  C  C  R  E  R  S  K  S  L  L  S  L  L  P  *  T  S  Y  R  K  W  I  T  E  :  H  C  D  G  L  Y  L  Y  R  S  Q  K  L  P  A  R  T  C  C  S  C  C  N  K :   N  C  T  A  V  S  *  E  T  E  R  *  N  R  G  S  R  F  L  Y  N  Y  I  I  R  Y  G  D  I  *  K  :  I  A  S  S  L  L  P  P  G  *  S  *  G  R  N  C  P  V  K  T  S  C  R  C  W  G  *  E  W  R  D  N  Y  C  *  A  *  N  K  N  K  T  I  A  K  F  K  S  F  *  S  K  D  P  P  S  I  C  *  S  I  C  Q  *  S  W  F  V  Q  K  :  E  F  I  L  L  G  C  I  S  G  S  C  F  Y  V  P  D  Q  R  P  R  S  A  T  *  R  T  M  G  K  N  S  P  S  A  K  *  L  E  L  L  Q  N  A  W  I  W  *  P  W  G  T  C  F  I  S  C  R  R  I  Y  P  S  F  *  I  S  C  K  S  E  F  Y  E  S  F  R  N  C  G  N  E  N  R  :  L  P  R  R  G  *  *  *  G  S  S  S  Y  G  S  R  G  S  T  F  P  A  K  M  S  *  S  *  E  I  Y  P  V  R  C  K   : G  V  R  A  C  D  S  E  A  L  L  N  S  V  F  T  F  C  S  V  F  T  D  :  A  T  R  F  R  L  D  E  E  I  T  T  N  T  W  T  E  T  P  A  *  P  S   : C  N  I  R  A  S  P  Y  L  W  T  E  V  C  N  F  C  F  A  T  L  R  R  *  C   : G  V  E  K  S  S  I  S  *  S  S  S  T  A  I  P  L  C  S  S  *  T  V  N  Y  S  *  L  C  I  P  :  A  *  F  G  S  E  W  R  E  G  P  N  R  *  S  E  N  K  I  C  L  S  E  T  L  V  S  I  S  M  S  *  K  I  H  Q  L  N  Q  L  W  S  K  L  *  D  N  E  A  G  L  S  L  V  N  F  S  V  V  C  K  I  L  F  V  D  *  F  V  Q  T  M  L  S  C  L  L  W  Q  *  N  D  P  L  P  Y  R  F  P  C  N  E  C  I  F  Y  L  E  F  D  F  I  F  S  R  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75975" stop="76286"/>
                    <exon start="77347" stop="77424"/>
                    <exon start="77705" stop="77760"/>
                    <exon start="79133" stop="79252"/>
                    <exon start="79408" stop="79478"/>
                    <exon start="79684" stop="79777"/>
                    <exon start="79878" stop="80087"/>
                    <exon start="81143" stop="81394"/>
                    <exon start="81676" stop="81784"/>
                    <exon start="81913" stop="81980"/>
                    <exon start="82519" stop="82588"/>
                    <exon start="82695" stop="82769"/>
                    <exon start="82884" stop="82975"/>
                    <exon start="83446" stop="83521"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1680</number_coding_nucleotides>
                  <number_encoded_amino_acids>560</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKEIMYRPVATTTRGGVPTDSGDSVVTLDQVPRWIDSDIRYLYENEDPNSDYADPLSSASGSEGNANGIVSKFPVDHEINSKIYLWRGDPWNLEVDAVVNSTNENLDEAHSSPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLQSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKIEAVVFCTTTSSDTEIYKRLLPLYFPRDNHEEEIARLKLPADVGDENGETTTAERKIRIKPLPNSKVSSPRTPQASVDLSVSNLGLSRRSSSYLDAFLDPAFMSLIKDPDQRRKEQWEKTAQAQNNWNCFKMLGYGDLGGPALSAAEEYTLHSRYLAKANSMNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFTLYVVKEFEPVIQKPYSIVYLHSAASLQMQPDLGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKSAIFALQLFVDNVVWKKVVYLDRLLQLFRYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYQRP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75317" e_stop="75422"/>
            <exon e_start="75846" e_stop="76286"/>
            <exon e_start="77347" e_stop="77424"/>
            <exon e_start="77705" e_stop="77760"/>
            <exon e_start="79133" e_stop="79252"/>
            <exon e_start="79408" e_stop="79478"/>
            <exon e_start="79684" e_stop="79777"/>
            <exon e_start="79878" e_stop="80087"/>
            <exon e_start="81143" e_stop="81394"/>
            <exon e_start="81676" e_stop="81784"/>
            <exon e_start="81913" e_stop="81980"/>
            <exon e_start="82519" e_stop="82588"/>
            <exon e_start="82695" e_stop="82769"/>
            <exon e_start="82884" e_stop="82975"/>
            <exon e_start="83446" e_stop="83765"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.948" acc_prob="0.991" e_score="0.972"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.993"/>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.812" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.989" e_score="0.987"/>
          <exon-intron don_prob="0.614" acc_prob="0.509" e_score="1.000"/>
          <exon-intron don_prob="0.706" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.778" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="75317" e_stop="75422" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="0.948" acc_prob="0.991">
            <gDNA_intron_boundary i_start="75423" i_stop="75845" i_length="423"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="75846" e_stop="76286" e_length="441"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="76287" i_stop="77346" i_length="1060"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77347" e_stop="77424" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="77425" i_stop="77704" i_length="280"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77705" e_stop="77760" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.935">
            <gDNA_intron_boundary i_start="77761" i_stop="79132" i_length="1372"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79133" e_stop="79252" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.812" acc_prob="0.980">
            <gDNA_intron_boundary i_start="79253" i_stop="79407" i_length="155"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79408" e_stop="79478" e_length="71"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="79479" i_stop="79683" i_length="205"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="79684" e_stop="79777" e_length="94"/>
          </exon>
          <intron i_serial="7" don_prob="0.900" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79778" i_stop="79877" i_length="100"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="79878" e_stop="80087" e_length="210"/>
          </exon>
          <intron i_serial="8" don_prob="0.834" acc_prob="0.917">
            <gDNA_intron_boundary i_start="80088" i_stop="81142" i_length="1055"/>
          </intron>
          <exon e_serial="9" e_score="0.987">
            <gDNA_exon_boundary e_start="81143" e_stop="81394" e_length="252"/>
          </exon>
          <intron i_serial="9" don_prob="0.990" acc_prob="0.989">
            <gDNA_intron_boundary i_start="81395" i_stop="81675" i_length="281"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="81676" e_stop="81784" e_length="109"/>
          </exon>
          <intron i_serial="10" don_prob="0.614" acc_prob="0.509">
            <gDNA_intron_boundary i_start="81785" i_stop="81912" i_length="128"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="81913" e_stop="81980" e_length="68"/>
          </exon>
          <intron i_serial="11" don_prob="0.706" acc_prob="0.992">
            <gDNA_intron_boundary i_start="81981" i_stop="82518" i_length="538"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="82519" e_stop="82588" e_length="70"/>
          </exon>
          <intron i_serial="12" don_prob="0.778" acc_prob="0.995">
            <gDNA_intron_boundary i_start="82589" i_stop="82694" i_length="106"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="82695" e_stop="82769" e_length="75"/>
          </exon>
          <intron i_serial="13" don_prob="0.995" acc_prob="0.820">
            <gDNA_intron_boundary i_start="82770" i_stop="82883" i_length="114"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="82884" e_stop="82975" e_length="92"/>
          </exon>
          <intron i_serial="14" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="82976" i_stop="83445" i_length="470"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="83446" e_stop="83765" e_length="320"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75317" stop="75422"/>
              <exon start="75846" stop="76286"/>
              <exon start="77347" stop="77387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75877" stop="76286"/>
              <exon start="77347" stop="77424"/>
              <exon start="77705" stop="77755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76121" stop="76286"/>
              <exon start="77347" stop="77424"/>
              <exon start="77705" stop="77760"/>
              <exon start="79133" stop="79252"/>
              <exon start="79408" stop="79478"/>
              <exon start="79684" stop="79777"/>
              <exon start="79878" stop="79904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76131" stop="76286"/>
              <exon start="77347" stop="77424"/>
              <exon start="77705" stop="77760"/>
              <exon start="79133" stop="79195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76135" stop="76286"/>
              <exon start="77347" stop="77424"/>
              <exon start="77705" stop="77760"/>
              <exon start="79133" stop="79252"/>
              <exon start="79408" stop="79478"/>
              <exon start="79684" stop="79777"/>
              <exon start="79878" stop="79910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76188" stop="76286"/>
              <exon start="77347" stop="77424"/>
              <exon start="77705" stop="77760"/>
              <exon start="79133" stop="79252"/>
              <exon start="79408" stop="79478"/>
              <exon start="79684" stop="79691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76233" stop="76286"/>
              <exon start="77347" stop="77424"/>
              <exon start="77705" stop="77760"/>
              <exon start="79133" stop="79252"/>
              <exon start="79408" stop="79478"/>
              <exon start="79684" stop="79704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76267" stop="76286"/>
              <exon start="77347" stop="77424"/>
              <exon start="77705" stop="77760"/>
              <exon start="79133" stop="79252"/>
              <exon start="79408" stop="79478"/>
              <exon start="79684" stop="79777"/>
              <exon start="79878" stop="79994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77710" stop="77760"/>
              <exon start="79133" stop="79252"/>
              <exon start="79408" stop="79478"/>
              <exon start="79684" stop="79777"/>
              <exon start="79878" stop="80087"/>
              <exon start="81143" stop="81200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77732" stop="77760"/>
              <exon start="79133" stop="79252"/>
              <exon start="79408" stop="79478"/>
              <exon start="79684" stop="79777"/>
              <exon start="79878" stop="80087"/>
              <exon start="81143" stop="81193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79176" stop="79252"/>
              <exon start="79408" stop="79478"/>
              <exon start="79684" stop="79777"/>
              <exon start="79878" stop="80087"/>
              <exon start="81143" stop="81368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79411" stop="79478"/>
              <exon start="79684" stop="79777"/>
              <exon start="79878" stop="80087"/>
              <exon start="81143" stop="81211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81345" stop="81394"/>
              <exon start="81676" stop="81784"/>
              <exon start="81913" stop="81980"/>
              <exon start="82519" stop="82588"/>
              <exon start="82695" stop="82769"/>
              <exon start="82884" stop="82975"/>
              <exon start="83446" stop="83759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82585" stop="82588"/>
              <exon start="82695" stop="82769"/>
              <exon start="82884" stop="82975"/>
              <exon start="83446" stop="83761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288999" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82586" stop="82588"/>
              <exon start="82695" stop="82769"/>
              <exon start="82884" stop="82975"/>
              <exon start="83446" stop="83765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331805" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGATTTTGGCTATAGCTCATTTTTTGGACCCCACCCCTCCAGCACAATTCCCTCCTATTGCCAACCTAGCTTGTTGTCTTGTTGAAATTTCACATCCATTCACAG : GGGATTTGATTCTTTTGGTGGAAACGTGGGGTTACTGAATTTTTTCAGTATGTGTTTGACTTTAGCTGTTATCGAACAAAGGAGAATATTCTGTTCTTTATGAAGGAATAGGAGTGAGATTCGAGTTAAGAGAAGGAAATTATGTATCGGCCTGTAGCAACTACTACCCGAGGAGGGGTACCAACTGATAGTGGAGATTCTGTGGTGACACTGGATCAAGTTCCACGTTGGATTGATTCTGACATTAGGTACTTGTATGAGAATGAAGACCCTAATTCCGACTATGCAGATCCTTTGTCATCTGCTTCAGGGTCTGAGGGCAATGCGAATGGTATTGTTTCCAAGTTTCCTGTGGATCATGAGATTAACTCCAAGATATACCTGTGGAGAGGAGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACAAATGAG : AATTTAGATGAAGCACACAGCAGCCCTGGATTGCATGCTGCAGCTGGACCTGGACTTGCAGAGGAATGTGCTACACTC : GGAGGATGCCGGACAGGAATGGCAAAAGTTACCAATGCTTATGATCTCCCTGCTAG : GAGGGTCATTCACACTGTTGGTCCGAAGTATGCGGTAAAATACCACACTGCTGCCGAGAACGCTCTAAGTCATTGCTATCGCTCTTGCCTTGAACTTCTTATAGAAAATGGATTACAGAG : CATTGCGATGGGCTGTATCTATACCGAAGCCAAAAATTACCCGCGAGAACCTGCTGCTCATGTTGCAATAA : GAACTGTACGGCGGTTTCTTGAGAAACAGAAAGATAAAATAGAGGCAGTCGTTTTCTGTACAACTACATCATCCGATACGGAGATATATAAAAG : ATTGCTTCCTCTTTACTTCCCCCGGGATAATCATGAGGAAGAAATTGCCCGGTTAAAACTTCCTGCAGATGTTGGGGATGAGAATGGAGAGACAACTACTGCTGAGCGTAAAATAAGAATAAAACCATTGCCAAATTCAAAAGTTTCTAGTCCAAGGACCCCCCAAGCATCTGTTGATCTATCTGTCAGTAATCTTGGTTTGTCCAGAAG : GAGTTCATCCTACTTGGATGCATTTCTGGATCCTGCTTTTATGTCCCTGATCAAAGACCCAGATCAGCGACGTAAAGAACAATGGGAAAAAACAGCCCAAGCGCAAAATAATTGGAACTGCTTCAAAATGCTTGGATATGGTGACCTTGGGGGACCTGCTTTATCAGCTGCAGAAGAATATACCCTTCATTCTAGATATCTTGCAAAAGCGAATTCTATGAATCTTTCAGAAATTGCGGAAATGAAAATCGT : TTACCGAGGAGGGGTTGATAGTGAGGGTCGTCCAGTTATGGTAGTCGTGGGAGCACATTTCCTGCTAAGATGTCTTGATCTTGAGAGATTTACCCTGTACGTTGTAAAG : GAGTTCGAGCCTGTGATTCAGAAGCCTTACTCAATAGTGTATTTACATTCTGCAGCGTCTTTACAGAT : GCAACCAGATTTAGGCTGGATGAAGAGATTACAACAAATACTTGGACGGAAACACCAGCGTAACCTTCAT : GCAATATACGTGCTTCACCCTACCTTTGGACTGAAGTCTGCAATTTTTGCTTTGCAACTCTTCGTCGATAATGTG : GTGTGGAAAAAAGTAGTATATCTTGATCGTCTTCTACAGCTATTCCGCTATGTTCCTCGTGAACAGTTAACTATTCCTGACTTTGTATTCCA : GCATGATTTGGAAGTGAATGGAGGGAAGGGCCTAATCGTTGATCCGAGAACAAAATATGTTTATCAGAGACCTTAGTGTCCATATCCATGAGCTAAAAGATTCATCAGTTAAACCAGCTATGGAGCAAATTGTGAGATAATGAAGCTGGGTTATCTCTTGTTAATTTCTCTGTTGTTTGTAAAATTTTATTTGTTGATTAATTTGTGCAGACAATGTTGTCTTGCCTCCTGTGGCAATAAAATGACCCCCTCCCCTATCGTTTTCCATGTAATGAATGTATATTTTATTTAGAATTTGATTTTATATTTAGTCGACATTA</gDNA_template>
            <first_frame> P  I  L  A  I  A  H  F  L  D  P  T  P  P  A  Q  F  P  P  I  A  N  L  A  C  C  L  V  E  I  S  H  P  F  T   : G  D  L  I  L  L  V  E  T  W  G  Y  *  I  F  S  V  C  V  *  L  *  L  L  S  N  K  G  E  Y  S  V  L  Y  E  G  I  G  V  R  F  E  L  R  E  G  N  Y  V  S  A  C  S  N  Y  Y  P  R  R  G  T  N  *  *  W  R  F  C  G  D  T  G  S  S  S  T  L  D  *  F  *  H  *  V  L  V  *  E  *  R  P  *  F  R  L  C  R  S  F  V  I  C  F  R  V  *  G  Q  C  E  W  Y  C  F  Q  V  S  C  G  S  *  D  *  L  Q  D  I  P  V  E  R  R  P  L  E  S  R  G  R  C  C  C  *  L  Y  K  *   : E  F  R  *  S  T  Q  Q  P  W  I  A  C  C  S  W  T  W  T  C  R  G  M  C  Y  T   : R  R  M  P  D  R  N  G  K  S  Y  Q  C  L  *  S  P  C  *  :  E  G  H  S  H  C  W  S  E  V  C  G  K  I  P  H  C  C  R  E  R  S  K  S  L  L  S  L  L  P  *  T  S  Y  R  K  W  I  T  E  :  H  C  D  G  L  Y  L  Y  R  S  Q  K  L  P  A  R  T  C  C  S  C  C  N  K :   N  C  T  A  V  S  *  E  T  E  R  *  N  R  G  S  R  F  L  Y  N  Y  I  I  R  Y  G  D  I  *  K  :  I  A  S  S  L  L  P  P  G  *  S  *  G  R  N  C  P  V  K  T  S  C  R  C  W  G  *  E  W  R  D  N  Y  C  *  A  *  N  K  N  K  T  I  A  K  F  K  S  F  *  S  K  D  P  P  S  I  C  *  S  I  C  Q  *  S  W  F  V  Q  K  :  E  F  I  L  L  G  C  I  S  G  S  C  F  Y  V  P  D  Q  R  P  R  S  A  T  *  R  T  M  G  K  N  S  P  S  A  K  *  L  E  L  L  Q  N  A  W  I  W  *  P  W  G  T  C  F  I  S  C  R  R  I  Y  P  S  F  *  I  S  C  K  S  E  F  Y  E  S  F  R  N  C  G  N  E  N  R  :  L  P  R  R  G  *  *  *  G  S  S  S  Y  G  S  R  G  S  T  F  P  A  K  M  S  *  S  *  E  I  Y  P  V  R  C  K   : G  V  R  A  C  D  S  E  A  L  L  N  S  V  F  T  F  C  S  V  F  T  D  :  A  T  R  F  R  L  D  E  E  I  T  T  N  T  W  T  E  T  P  A  *  P  S   : C  N  I  R  A  S  P  Y  L  W  T  E  V  C  N  F  C  F  A  T  L  R  R  *  C   : G  V  E  K  S  S  I  S  *  S  S  S  T  A  I  P  L  C  S  S  *  T  V  N  Y  S  *  L  C  I  P  :  A  *  F  G  S  E  W  R  E  G  P  N  R  *  S  E  N  K  I  C  L  S  E  T  L  V  S  I  S  M  S  *  K  I  H  Q  L  N  Q  L  W  S  K  L  *  D  N  E  A  G  L  S  L  V  N  F  S  V  V  C  K  I  L  F  V  D  *  F  V  Q  T  M  L  S  C  L  L  W  Q  *  N  D  P  L  P  Y  R  F  P  C  N  E  C  I  F  Y  L  E  F  D  F  I  F  S  R  H   </first_frame>
            <second_frame>  R  F  W  L  *  L  I  F  W  T  P  P  L  Q  H  N  S  L  L  L  P  T  *  L  V  V  L  L  K  F  H  I  H  S  Q  :  G  I  *  F  F  W  W  K  R  G  V  T  E  F  F  Q  Y  V  F  D  F  S  C  Y  R  T  K  E  N  I  L  F  F  M  K  E  *  E  *  D  S  S  *  E  K  E  I  M  Y  R  P  V  A  T  T  T  R  G  G  V  P  T  D  S  G  D  S  V  V  T  L  D  Q  V  P  R  W  I  D  S  D  I  R  Y  L  Y  E  N  E  D  P  N  S  D  Y  A  D  P  L  S  S  A  S  G  S  E  G  N  A  N  G  I  V  S  K  F  P  V  D  H  E  I  N  S  K  I  Y  L  W  R  G  D  P  W  N  L  E  V  D  A  V  V  N  S  T  N  E  :  N  L  D  E  A  H  S  S  P  G  L  H  A  A  A  G  P  G  L  A  E  E  C  A  T  L  :  G  G  C  R  T  G  M  A  K  V  T  N  A  Y  D  L  P  A  R :   R  V  I  H  T  V  G  P  K  Y  A  V  K  Y  H  T  A  A  E  N  A  L  S  H  C  Y  R  S  C  L  E  L  L  I  E  N  G  L  Q  S :   I  A  M  G  C  I  Y  T  E  A  K  N  Y  P  R  E  P  A  A  H  V  A  I   : R  T  V  R  R  F  L  E  K  Q  K  D  K  I  E  A  V  V  F  C  T  T  T  S  S  D  T  E  I  Y  K  R :   L  L  P  L  Y  F  P  R  D  N  H  E  E  E  I  A  R  L  K  L  P  A  D  V  G  D  E  N  G  E  T  T  T  A  E  R  K  I  R  I  K  P  L  P  N  S  K  V  S  S  P  R  T  P  Q  A  S  V  D  L  S  V  S  N  L  G  L  S  R  R :   S  S  S  Y  L  D  A  F  L  D  P  A  F  M  S  L  I  K  D  P  D  Q  R  R  K  E  Q  W  E  K  T  A  Q  A  Q  N  N  W  N  C  F  K  M  L  G  Y  G  D  L  G  G  P  A  L  S  A  A  E  E  Y  T  L  H  S  R  Y  L  A  K  A  N  S  M  N  L  S  E  I  A  E  M  K  I  V :   Y  R  G  G  V  D  S  E  G  R  P  V  M  V  V  V  G  A  H  F  L  L  R  C  L  D  L  E  R  F  T  L  Y  V  V  K  :  E  F  E  P  V  I  Q  K  P  Y  S  I  V  Y  L  H  S  A  A  S  L  Q  M :   Q  P  D  L  G  W  M  K  R  L  Q  Q  I  L  G  R  K  H  Q  R  N  L  H  :  A  I  Y  V  L  H  P  T  F  G  L  K  S  A  I  F  A  L  Q  L  F  V  D  N  V  :  V  W  K  K  V  V  Y  L  D  R  L  L  Q  L  F  R  Y  V  P  R  E  Q  L  T  I  P  D  F  V  F  Q :   H  D  L  E  V  N  G  G  K  G  L  I  V  D  P  R  T  K  Y  V  Y  Q  R  P  *  C  P  Y  P  *  A  K  R  F  I  S  *  T  S  Y  G  A  N  C  E  I  M  K  L  G  Y  L  L  L  I  S  L  L  F  V  K  F  Y  L  L  I  N  L  C  R  Q  C  C  L  A  S  C  G  N  K  M  T  P  S  P  I  V  F  H  V  M  N  V  Y  F  I  *  N  L  I  L  Y  L  V  D  I  </second_frame>
            <third_frame>   D  F  G  Y  S  S  F  F  G  P  H  P  S  S  T  I  P  S  Y  C  Q  P  S  L  L  S  C  *  N  F  T  S  I  H  R :   G  F  D  S  F  G  G  N  V  G  L  L  N  F  F  S  M  C  L  T  L  A  V  I  E  Q  R  R  I  F  C  S  L  *  R  N  R  S  E  I  R  V  K  R  R  K  L  C  I  G  L  *  Q  L  L  P  E  E  G  Y  Q  L  I  V  E  I  L  W  *  H  W  I  K  F  H  V  G  L  I  L  T  L  G  T  C  M  R  M  K  T  L  I  P  T  M  Q  I  L  C  H  L  L  Q  G  L  R  A  M  R  M  V  L  F  P  S  F  L  W  I  M  R  L  T  P  R  Y  T  C  G  E  E  T  P  G  I  S  R  *  M  L  L  L  T  L  Q  M  R :   I  *  M  K  H  T  A  A  L  D  C  M  L  Q  L  D  L  D  L  Q  R  N  V  L  H  S :   E  D  A  G  Q  E  W  Q  K  L  P  M  L  M  I  S  L  L   : G  G  S  F  T  L  L  V  R  S  M  R  *  N  T  T  L  L  P  R  T  L  *  V  I  A  I  A  L  A  L  N  F  L  *  K  M  D  Y  R   : A  L  R  W  A  V  S  I  P  K  P  K  I  T  R  E  N  L  L  L  M  L  Q  *  :  E  L  Y  G  G  F  L  R  N  R  K  I  K  *  R  Q  S  F  S  V  Q  L  H  H  P  I  R  R  Y  I  K   : D  C  F  L  F  T  S  P  G  I  I  M  R  K  K  L  P  G  *  N  F  L  Q  M  L  G  M  R  M  E  R  Q  L  L  L  S  V  K  *  E  *  N  H  C  Q  I  Q  K  F  L  V  Q  G  P  P  K  H  L  L  I  Y  L  S  V  I  L  V  C  P  E   : G  V  H  P  T  W  M  H  F  W  I  L  L  L  C  P  *  S  K  T  Q  I  S  D  V  K  N  N  G  K  K  Q  P  K  R  K  I  I  G  T  A  S  K  C  L  D  M  V  T  L  G  D  L  L  Y  Q  L  Q  K  N  I  P  F  I  L  D  I  L  Q  K  R  I  L  *  I  F  Q  K  L  R  K  *  K  S   : F  T  E  E  G  L  I  V  R  V  V  Q  L  W  *  S  W  E  H  I  S  C  *  D  V  L  I  L  R  D  L  P  C  T  L  *  R :   S  S  S  L  *  F  R  S  L  T  Q  *  C  I  Y  I  L  Q  R  L  Y  R   : C  N  Q  I  *  A  G  *  R  D  Y  N  K  Y  L  D  G  N  T  S  V  T  F  M :   Q  Y  T  C  F  T  L  P  L  D  *  S  L  Q  F  L  L  C  N  S  S  S  I  M  W :   C  G  K  K  *  Y  I  L  I  V  F  Y  S  Y  S  A  M  F  L  V  N  S  *  L  F  L  T  L  Y  S   : S  M  I  W  K  *  M  E  G  R  A  *  S  L  I  R  E  Q  N  M  F  I  R  D  L  S  V  H  I  H  E  L  K  D  S  S  V  K  P  A  M  E  Q  I  V  R  *  *  S  W  V  I  S  C  *  F  L  C  C  L  *  N  F  I  C  *  L  I  C  A  D  N  V  V  L  P  P  V  A  I  K  *  P  P  P  L  S  F  S  M  *  *  M  Y  I  L  F  R  I  *  F  Y  I  *  S  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75975" stop="76286"/>
                    <exon start="77347" stop="77424"/>
                    <exon start="77705" stop="77760"/>
                    <exon start="79133" stop="79252"/>
                    <exon start="79408" stop="79478"/>
                    <exon start="79684" stop="79777"/>
                    <exon start="79878" stop="80087"/>
                    <exon start="81143" stop="81394"/>
                    <exon start="81676" stop="81784"/>
                    <exon start="81913" stop="81980"/>
                    <exon start="82519" stop="82588"/>
                    <exon start="82695" stop="82769"/>
                    <exon start="82884" stop="82975"/>
                    <exon start="83446" stop="83521"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1680</number_coding_nucleotides>
                  <number_encoded_amino_acids>560</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKEIMYRPVATTTRGGVPTDSGDSVVTLDQVPRWIDSDIRYLYENEDPNSDYADPLSSASGSEGNANGIVSKFPVDHEINSKIYLWRGDPWNLEVDAVVNSTNENLDEAHSSPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLQSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKIEAVVFCTTTSSDTEIYKRLLPLYFPRDNHEEEIARLKLPADVGDENGETTTAERKIRIKPLPNSKVSSPRTPQASVDLSVSNLGLSRRSSSYLDAFLDPAFMSLIKDPDQRRKEQWEKTAQAQNNWNCFKMLGYGDLGGPALSAAEEYTLHSRYLAKANSMNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFTLYVVKEFEPVIQKPYSIVYLHSAASLQMQPDLGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKSAIFALQLFVDNVVWKKVVYLDRLLQLFRYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYQRP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="86339" PGL_stop="88854"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86339" e_stop="86409"/>
            <exon e_start="86562" e_stop="86734"/>
            <exon e_start="87281" e_stop="87393"/>
            <exon e_start="88112" e_stop="88157"/>
            <exon e_start="88281" e_stop="88321"/>
            <exon e_start="88405" e_stop="88854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.690" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.969" e_score="0.994"/>
          <exon-intron don_prob="0.986" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86339" e_stop="86409" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.690">
            <gDNA_intron_boundary i_start="86410" i_stop="86561" i_length="152"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="86562" e_stop="86734" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.969">
            <gDNA_intron_boundary i_start="86735" i_stop="87280" i_length="546"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87281" e_stop="87393" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.990">
            <gDNA_intron_boundary i_start="87394" i_stop="88111" i_length="718"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88112" e_stop="88157" e_length="46"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.991">
            <gDNA_intron_boundary i_start="88158" i_stop="88280" i_length="123"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="88281" e_stop="88321" e_length="41"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="88322" i_stop="88404" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="88405" e_stop="88854" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86339" stop="86409"/>
              <exon start="86562" stop="86734"/>
              <exon start="87281" stop="87393"/>
              <exon start="88112" stop="88157"/>
              <exon start="88281" stop="88321"/>
              <exon start="88405" stop="88854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734455" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGGAATCCAGAAGGGGATCAGCCTCAAAGAGTGAAGCTCAAGATATGGCTATAAGCATCTTGCGTCTACG : TGCAGACCTGCAGAATGCAGTTCAGAGTGAAAATTATGATTTGGCAGCTAAATTACGAGATGAAATTTCCGAGCTTGAGGCAGAGTCTCTGACTACATCGATAAGAGCTCAGGCATATGAAAATGCTCAATATGCATTTCGATTAGGCCAGAAAGTGAAGCACAAGAATTTTG : GATATCGTGGTGTTATATGTGGGATGGACCCAATATGTTGTGAATCGAATTCATGGATGGAAAATGCTCAAGTAGAAAAGTTGACTCGTGGTCCTGATCAGCCCTTTTATCAG : GTGCTGGTGGATGTACATACAGATCCCAATCTGTTAGTGGCATATG : TACCTGAGGAAAGTCTAGTGGCGCCTAGCGAACCAGATAAG : GATCGATTTGATCATCCCTACACCTCATTCTTATTTTTTGGGATGGATGCTGCCGGAGATTTCATACCAATCAAGCAGCTGCGAGAGAAGTACAACAAGCCTCGGCATGAGGTGCCTTATGATCCGGACAATGAGAAGAGTGGAGAAAGTTCCTAGATGCGACCAGGAGTTCTGTTCCCCTCTAAGCAATTTCTGGATATATGAGAAATTTTCTTGAGTGAAGAGAAATGCCTTCCTTCCCCTCTTTCCATTATGGTGGGGTTTACCTCATCTTGCAAGACTGCAAAATATGTTTTCTGCACAATGTCCTTGGAATACACAACACGATTGTGGAGGCTCTTGTATTGTTCTGGAGATTTTGGATGACCATGACCAAAGTTTATTGAGCTTCTGTTATTGTCAGCTTGTTTCAACAGAAAATGGTCAATGTATATTCATGTTTTACTGCAA</gDNA_template>
            <first_frame> Q  E  S  R  R  G  S  A  S  K  S  E  A  Q  D  M  A  I  S  I  L  R  L  R :   A  D  L  Q  N  A  V  Q  S  E  N  Y  D  L  A  A  K  L  R  D  E  I  S  E  L  E  A  E  S  L  T  T  S  I  R  A  Q  A  Y  E  N  A  Q  Y  A  F  R  L  G  Q  K  V  K  H  K  N  F   : G  Y  R  G  V  I  C  G  M  D  P  I  C  C  E  S  N  S  W  M  E  N  A  Q  V  E  K  L  T  R  G  P  D  Q  P  F  Y  Q  :  V  L  V  D  V  H  T  D  P  N  L  L  V  A  Y   : V  P  E  E  S  L  V  A  P  S  E  P  D  K  :  D  R  F  D  H  P  Y  T  S  F  L  F  F  G  M  D  A  A  G  D  F  I  P  I  K  Q  L  R  E  K  Y  N  K  P  R  H  E  V  P  Y  D  P  D  N  E  K  S  G  E  S  S  *  M  R  P  G  V  L  F  P  S  K  Q  F  L  D  I  *  E  I  F  L  S  E  E  K  C  L  P  S  P  L  S  I  M  V  G  F  T  S  S  C  K  T  A  K  Y  V  F  C  T  M  S  L  E  Y  T  T  R  L  W  R  L  L  Y  C  S  G  D  F  G  *  P  *  P  K  F  I  E  L  L  L  L  S  A  C  F  N  R  K  W  S  M  Y  I  H  V  L  L  Q </first_frame>
            <second_frame>  R  N  P  E  G  D  Q  P  Q  R  V  K  L  K  I  W  L  *  A  S  C  V  Y   : V  Q  T  C  R  M  Q  F  R  V  K  I  M  I  W  Q  L  N  Y  E  M  K  F  P  S  L  R  Q  S  L  *  L  H  R  *  E  L  R  H  M  K  M  L  N  M  H  F  D  *  A  R  K  *  S  T  R  I  L  :  D  I  V  V  L  Y  V  G  W  T  Q  Y  V  V  N  R  I  H  G  W  K  M  L  K  *  K  S  *  L  V  V  L  I  S  P  F  I  R :   C  W  W  M  Y  I  Q  I  P  I  C  *  W  H  M  :  Y  L  R  K  V  *  W  R  L  A  N  Q  I  R :   I  D  L  I  I  P  T  P  H  S  Y  F  L  G  W  M  L  P  E  I  S  Y  Q  S  S  S  C  E  R  S  T  T  S  L  G  M  R  C  L  M  I  R  T  M  R  R  V  E  K  V  P  R  C  D  Q  E  F  C  S  P  L  S  N  F  W  I  Y  E  K  F  S  *  V  K  R  N  A  F  L  P  L  F  P  L  W  W  G  L  P  H  L  A  R  L  Q  N  M  F  S  A  Q  C  P  W  N  T  Q  H  D  C  G  G  S  C  I  V  L  E  I  L  D  D  H  D  Q  S  L  L  S  F  C  Y  C  Q  L  V  S  T  E  N  G  Q  C  I  F  M  F  Y  C   </second_frame>
            <third_frame>   G  I  Q  K  G  I  S  L  K  E  *  S  S  R  Y  G  Y  K  H  L  A  S  T  :  C  R  P  A  E  C  S  S  E  *  K  L  *  F  G  S  *  I  T  R  *  N  F  R  A  *  G  R  V  S  D  Y  I  D  K  S  S  G  I  *  K  C  S  I  C  I  S  I  R  P  E  S  E  A  Q  E  F  W :   I  S  W  C  Y  M  W  D  G  P  N  M  L  *  I  E  F  M  D  G  K  C  S  S  R  K  V  D  S  W  S  *  S  A  L  L  S   : G  A  G  G  C  T  Y  R  S  Q  S  V  S  G  I  C :   T  *  G  K  S  S  G  A  *  R  T  R  *   : G  S  I  *  S  S  L  H  L  I  L  I  F  W  D  G  C  C  R  R  F  H  T  N  Q  A  A  A  R  E  V  Q  Q  A  S  A  *  G  A  L  *  S  G  Q  *  E  E  W  R  K  F  L  D  A  T  R  S  S  V  P  L  *  A  I  S  G  Y  M  R  N  F  L  E  *  R  E  M  P  S  F  P  S  F  H  Y  G  G  V  Y  L  I  L  Q  D  C  K  I  C  F  L  H  N  V  L  G  I  H  N  T  I  V  E  A  L  V  L  F  W  R  F  W  M  T  M  T  K  V  Y  *  A  S  V  I  V  S  L  F  Q  Q  K  M  V  N  V  Y  S  C  F  T  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86339" stop="86409"/>
                    <exon start="86562" stop="86734"/>
                    <exon start="87281" stop="87393"/>
                    <exon start="88112" stop="88157"/>
                    <exon start="88281" stop="88321"/>
                    <exon start="88405" stop="88560"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QESRRGSASKSEAQDMAISILRLRADLQNAVQSENYDLAAKLRDEISELEAESLTTSIRAQAYENAQYAFRLGQKVKHKNFGYRGVICGMDPICCESNSWMENAQVEKLTRGPDQPFYQVLVDVHTDPNLLVAYVPEESLVAPSEPDKDRFDHPYTSFLFFGMDAAGDFIPIKQLREKYNKPRHEVPYDPDNEKSGESS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88622" stop="88852"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKRNAFLPLFPLWWGLPHLARLQNMFSAQCPWNTQHDCGGSCIVLEILDDHDQSLLSFCYCQLVSTENGQCIFMFYC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="95556" PGL_stop="95028"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95556" e_stop="95028"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="95556" e_stop="95028" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95556" stop="95028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212395" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGTTCACAGTCATCTCAGAGACAAATTGGAGATTATTGGCAAGCTAATGGTGGTAGTTCTAGGGTGCGTCCAGGCTGTGCCAGTGAGCTACCCAACCGAAGTGTTTTCTACCATGGGTCCTCATCTGGGACGAAAGAATCACCAATTCACATCCCTTCAGGTGCTTTTGACTCTTTGAGCTACATTAAGGGGGACCGTTTTACATCTGAACGTTCCTCTAATAATGCATCCGAGAATTTTCTCATTAGTTCTAACAATACGGATTTGAAATCTGTTAAAGGCTTCAACTTAAATGTGCTAGCAACAAGTGCACTCAGCGAGGAAGCGCCAAGGCAAGATGTTGAGTTTAGTAATGAAAAAAGAGAGCGTCAAGACCCTGTGACAGTTTTGCCATGGCTTAAAGCTAAAGCAAATTATAAAAATGAGGATGTCAATACAAGGATAGGTGGAACTTCAGCAAATTCAGGATTTGTCCAGGCTCACTCTAACTCTCCTTTCTGCCAGAGTGATCCATCAGCTTTGGAACAT</gDNA_template>
            <first_frame> G  F  T  V  I  S  E  T  N  W  R  L  L  A  S  *  W  W  *  F  *  G  A  S  R  L  C  Q  *  A  T  Q  P  K  C  F  L  P  W  V  L  I  W  D  E  R  I  T  N  S  H  P  F  R  C  F  *  L  F  E  L  H  *  G  G  P  F  Y  I  *  T  F  L  *  *  C  I  R  E  F  S  H  *  F  *  Q  Y  G  F  E  I  C  *  R  L  Q  L  K  C  A  S  N  K  C  T  Q  R  G  S  A  K  A  R  C  *  V  *  *  *  K  K  R  A  S  R  P  C  D  S  F  A  M  A  *  S  *  S  K  L  *  K  *  G  C  Q  Y  K  D  R  W  N  F  S  K  F  R  I  C  P  G  S  L  *  L  S  F  L  P  E  *  S  I  S  F  G  T  </first_frame>
            <second_frame>  G  S  Q  S  S  Q  R  Q  I  G  D  Y  W  Q  A  N  G  G  S  S  R  V  R  P  G  C  A  S  E  L  P  N  R  S  V  F  Y  H  G  S  S  S  G  T  K  E  S  P  I  H  I  P  S  G  A  F  D  S  L  S  Y  I  K  G  D  R  F  T  S  E  R  S  S  N  N  A  S  E  N  F  L  I  S  S  N  N  T  D  L  K  S  V  K  G  F  N  L  N  V  L  A  T  S  A  L  S  E  E  A  P  R  Q  D  V  E  F  S  N  E  K  R  E  R  Q  D  P  V  T  V  L  P  W  L  K  A  K  A  N  Y  K  N  E  D  V  N  T  R  I  G  G  T  S  A  N  S  G  F  V  Q  A  H  S  N  S  P  F  C  Q  S  D  P  S  A  L  E  H </second_frame>
            <third_frame>   V  H  S  H  L  R  D  K  L  E  I  I  G  K  L  M  V  V  V  L  G  C  V  Q  A  V  P  V  S  Y  P  T  E  V  F  S  T  M  G  P  H  L  G  R  K  N  H  Q  F  T  S  L  Q  V  L  L  T  L  *  A  T  L  R  G  T  V  L  H  L  N  V  P  L  I  M  H  P  R  I  F  S  L  V  L  T  I  R  I  *  N  L  L  K  A  S  T  *  M  C  *  Q  Q  V  H  S  A  R  K  R  Q  G  K  M  L  S  L  V  M  K  K  E  S  V  K  T  L  *  Q  F  C  H  G  L  K  L  K  Q  I  I  K  M  R  M  S  I  Q  G  *  V  E  L  Q  Q  I  Q  D  L  S  R  L  T  L  T  L  L  S  A  R  V  I  H  Q  L  W  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95555" stop="95028"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSQSSQRQIGDYWQANGGSSRVRPGCASELPNRSVFYHGSSSGTKESPIHIPSGAFDSLSYIKGDRFTSERSSNNASENFLISSNNTDLKSVKGFNLNVLATSALSEEAPRQDVEFSNEKRERQDPVTVLPWLKAKANYKNEDVNTRIGGTSANSGFVQAHSNSPFCQSDPSALEH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="102014" PGL_stop="96755"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102014" e_stop="101590"/>
            <exon e_start="97288" e_stop="97053"/>
            <exon e_start="96850" e_stop="96755"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.996" e_score="0.974"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="102014" e_stop="101590" e_length="425"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.996">
            <gDNA_intron_boundary i_start="101589" i_stop="97289" i_length="4301"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97288" e_stop="97053" e_length="236"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="97052" i_stop="96851" i_length="202"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="96850" e_stop="96755" e_length="96"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102014" stop="101590"/>
              <exon start="97288" stop="97053"/>
              <exon start="96850" stop="96755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738296" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCAATAGAACTTGTGTCTTTCTCTCTCTTCTTCTTGATTTTCCCTTCTCTCTCTAAAAAAAAAAAAGAGTTTTCTTTTTCTTTGTTTCTGAGAAGTTGTGGCCCCAGCAGATCGAAATCTCCAATCTTTTTTCAGTTTTATGAGGATCTGAGCTTCTTCAATGGTGTTAGCAGACTACCCACTTTGTTCTTTTCTTCAAATTCTTTCTTAAATTATTATTACTATACATCATGTAAAATGGGAGAGAGTAGTTATTATTATTATACTACTATTTATTACTTTGTCTTCTTTTGTTCCTCTGCTTCTTCTTTTTTGGGGGTCACTCAATTCTCCATATGATTCTTGAATTGCTGCTGCTGCAAGTGTTGTTCAATCCATGAAAAAGGGTGTTGAGAACAAGTGTTTACAACATGAGGGGTTGAG : GAATGGGAACACAAGTGCACTATAAAGGATTCCGACCAAGCTATTACTCTATGAGGGACCTTAATGAGGATTGTAACAGCAGCAGTTGGACCCCATCTTATGGAGATAAGACATTACCAAACAGCCAATATTGTAATGGTTTCACCCCGAGGACTACAACTAATGCATATCCAGGGTATGATAAGGACATTCTAAAGCAGAGAATGCTTGAACACGAAGCCATATTCAGGAATCAG : GTGGTGGAACTTCATCGCCTTTACAGAACTCAAAGGGACATGATGGATGAATTTAAAAGGAAGGAAATGCATAAATATCGCGCATCAATGGAGCCA</gDNA_template>
            <first_frame> S  Q  *  N  L  C  L  S  L  S  S  S  *  F  S  L  L  S  L  K  K  K  K  S  F  L  F  L  C  F  *  E  V  V  A  P  A  D  R  N  L  Q  S  F  F  S  F  M  R  I  *  A  S  S  M  V  L  A  D  Y  P  L  C  S  F  L  Q  I  L  S  *  I  I  I  T  I  H  H  V  K  W  E  R  V  V  I  I  I  I  L  L  F  I  T  L  S  S  F  V  P  L  L  L  L  F  W  G  S  L  N  S  P  Y  D  S  *  I  A  A  A  A  S  V  V  Q  S  M  K  K  G  V  E  N  K  C  L  Q  H  E  G  L  R :   N  G  N  T  S  A  L  *  R  I  P  T  K  L  L  L  Y  E  G  P  *  *  G  L  *  Q  Q  Q  L  D  P  I  L  W  R  *  D  I  T  K  Q  P  I  L  *  W  F  H  P  E  D  Y  N  *  C  I  S  R  V  *  *  G  H  S  K  A  E  N  A  *  T  R  S  H  I  Q  E  S   : G  G  G  T  S  S  P  L  Q  N  S  K  G  H  D  G  *  I  *  K  E  G  N  A  *  I  S  R  I  N  G  A  </first_frame>
            <second_frame>  L  N  R  T  C  V  F  L  S  L  L  L  D  F  P  F  S  L  *  K  K  K  R  V  F  F  F  F  V  S  E  K  L  W  P  Q  Q  I  E  I  S  N  L  F  S  V  L  *  G  S  E  L  L  Q  W  C  *  Q  T  T  H  F  V  L  F  F  K  F  F  L  K  L  L  L  L  Y  I  M  *  N  G  R  E  *  L  L  L  L  Y  Y  Y  L  L  L  C  L  L  L  F  L  C  F  F  F  F  G  G  H  S  I  L  H  M  I  L  E  L  L  L  L  Q  V  L  F  N  P  *  K  R  V  L  R  T  S  V  Y  N  M  R  G  *   : G  M  G  T  Q  V  H  Y  K  G  F  R  P  S  Y  Y  S  M  R  D  L  N  E  D  C  N  S  S  S  W  T  P  S  Y  G  D  K  T  L  P  N  S  Q  Y  C  N  G  F  T  P  R  T  T  T  N  A  Y  P  G  Y  D  K  D  I  L  K  Q  R  M  L  E  H  E  A  I  F  R  N  Q  :  V  V  E  L  H  R  L  Y  R  T  Q  R  D  M  M  D  E  F  K  R  K  E  M  H  K  Y  R  A  S  M  E  P </second_frame>
            <third_frame>   S  I  E  L  V  S  F  S  L  F  F  L  I  F  P  S  L  S  K  K  K  K  E  F  S  F  S  L  F  L  R  S  C  G  P  S  R  S  K  S  P  I  F  F  Q  F  Y  E  D  L  S  F  F  N  G  V  S  R  L  P  T  L  F  F  S  S  N  S  F  L  N  Y  Y  Y  Y  T  S  C  K  M  G  E  S  S  Y  Y  Y  Y  T  T  I  Y  Y  F  V  F  F  C  S  S  A  S  S  F  L  G  V  T  Q  F  S  I  *  F  L  N  C  C  C  C  K  C  C  S  I  H  E  K  G  C  *  E  Q  V  F  T  T  *  G  V  E  :  E  W  E  H  K  C  T  I  K  D  S  D  Q  A  I  T  L  *  G  T  L  M  R  I  V  T  A  A  V  G  P  H  L  M  E  I  R  H  Y  Q  T  A  N  I  V  M  V  S  P  R  G  L  Q  L  M  H  I  Q  G  M  I  R  T  F  *  S  R  E  C  L  N  T  K  P  Y  S  G  I  R :   W  W  N  F  I  A  F  T  E  L  K  G  T  *  W  M  N  L  K  G  R  K  C  I  N  I  A  H  Q  W  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102012" stop="101674"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIELVSFSLFFLIFPSLSKKKKEFSFSLFLRSCGPSRSKSPIFFQFYEDLSFFNGVSRLPTLFFSSNSFLNYYYYTSCKMGESSYYYYTTIYYFVFFCSSASSFLGVTQFSI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101590" stop="97053"/>
                    <exon start="96850" stop="96755"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMGTQVHYKGFRPSYYSMRDLNEDCNSSSWTPSYGDKTLPNSQYCNGFTPRTTTNAYPGYDKDILKQRMLEHEAIFRNQVVELHRLYRTQRDMMDEFKRKEMHKYRASMEP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="104659" PGL_stop="105075"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104659" e_stop="105075"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="104659" e_stop="105075" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104659" stop="105075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229872" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGTCACAAGCCACGTTAATGTCGATCACCATAGTCCTCCTCTCTTGTTTGATAGTCTTTCTCTCAGGAGAAGAACGAAGATTAGCAGAAGGAAAAACAAGTGATGACGACGACCCGTTTCTGGAACTAACGGGAATATCGAGGATCGGAACACCAAGTATTTTTCTTACATGTCCCGTTTCGCCCACTTCTTTTGTGGTCCTCATACGGTGATGTTCAAAAGCTGATGAATCACTCTGACAAAAAGGAGGGTTTGAGTAAGCCTGGACAAAGCCAGAATTTGCTGAAGTTCCACCTAACCTAGCATTGATGCCCTCATTGTTACCATTTGCTTTACCTTTAAGCCATGGCAACACTGTCACAGGGTCTTGATGCTCTCTTTTTTCATTACCATACTCAACATCTCGCCTGGGAGG</gDNA_template>
            <first_frame> K  V  T  S  H  V  N  V  D  H  H  S  P  P  L  L  F  D  S  L  S  L  R  R  R  T  K  I  S  R  R  K  N  K  *  *  R  R  P  V  S  G  T  N  G  N  I  E  D  R  N  T  K  Y  F  S  Y  M  S  R  F  A  H  F  F  C  G  P  H  T  V  M  F  K  S  *  *  I  T  L  T  K  R  R  V  *  V  S  L  D  K  A  R  I  C  *  S  S  T  *  P  S  I  D  A  L  I  V  T  I  C  F  T  F  K  P  W  Q  H  C  H  R  V  L  M  L  S  F  F  I  T  I  L  N  I  S  P  G  R </first_frame>
            <second_frame>  R  S  Q  A  T  L  M  S  I  T  I  V  L  L  S  C  L  I  V  F  L  S  G  E  E  R  R  L  A  E  G  K  T  S  D  D  D  D  P  F  L  E  L  T  G  I  S  R  I  G  T  P  S  I  F  L  T  C  P  V  S  P  T  S  F  V  V  L  I  R  *  C  S  K  A  D  E  S  L  *  Q  K  G  G  F  E  *  A  W  T  K  P  E  F  A  E  V  P  P  N  L  A  L  M  P  S  L  L  P  F  A  L  P  L  S  H  G  N  T  V  T  G  S  *  C  S  L  F  S  L  P  Y  S  T  S  R  L  G   </second_frame>
            <third_frame>   G  H  K  P  R  *  C  R  S  P  *  S  S  S  L  V  *  *  S  F  S  Q  E  K  N  E  D  *  Q  K  E  K  Q  V  M  T  T  T  R  F  W  N  *  R  E  Y  R  G  S  E  H  Q  V  F  F  L  H  V  P  F  R  P  L  L  L  W  S  S  Y  G  D  V  Q  K  L  M  N  H  S  D  K  K  E  G  L  S  K  P  G  Q  S  Q  N  L  L  K  F  H  L  T  *  H  *  C  P  H  C  Y  H  L  L  Y  L  *  A  M  A  T  L  S  Q  G  L  D  A  L  F  F  H  Y  H  T  Q  H  L  A  W  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104660" stop="104872"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSQATLMSITIVLLSCLIVFLSGEERRLAEGKTSDDDDPFLELTGISRIGTPSIFLTCPVSPTSFVVLIR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="105493" PGL_stop="104714"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105493" e_stop="104714"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="105493" e_stop="104714" e_length="780"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105493" stop="104736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105346" stop="104714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249865" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTCTTGGGAGAAGCCAAATGGTAGCTTTGCTCAGAGGTTATCCTCGTTGCATACAAACTCAGTTTTCAACTCATCTGCAGCAGTTGGTAAGGGTTCACAGTCATCTCAGAGCCAAATTGGGGACTATTGGCATGCTAATGGTGGCAGTTCTAGGTTGCGTCCTGGATGTGCCGGTGAGATACCCATCCGGAGTGGTTTCTACCGTGGGTCCTCATCTGGGACAAAAGAATCACCAATTCACATCCCATCAGGTGCTTTTGACTCTTTGAGCTACATTAAGGGGGACCGTTTTACATCTGAACGTTCCTCTAATAATGCATGTGAGAATTTTCTTATTAGCTCTAACAATATGGATGTGAAATCTGCGAAGGGCTTCAACTTAAATGTTCTAGCAACAAGTGCACTCAGCGAGGAACCTCCCAGGCGAGATGTTGAGTATGGTAATGAAAAAAGAGAGCATCAAGACCCTGTGACAGTGTTGCCATGGCTTAAAGGTAAAGCAAATGGTAACAATGAGGGCATCAATGCTAGGTTAGGTGGAACTTCAGCAAATTCTGGCTTTGTCCAGGCTTACTCAAACCCTCCTTTTTGTCAGAGTGATTCATCAGCTTTTGAACATCACCGTATGAGGACCACAAAAGAAGTGGGCGAAACGGGACATGTAAGAAAAATACTTGGTGTTCCGATCCTCGATATTCCCGTTAGTTCCAGAAACGGGTCGTCGTCATCACTTGTTTTTCCTTCTGCTAATCTTCGTTCTTCTCCTGAGAGAAAGAC</gDNA_template>
            <first_frame> L  F  L  G  E  A  K  W  *  L  C  S  E  V  I  L  V  A  Y  K  L  S  F  Q  L  I  C  S  S  W  *  G  F  T  V  I  S  E  P  N  W  G  L  L  A  C  *  W  W  Q  F  *  V  A  S  W  M  C  R  *  D  T  H  P  E  W  F  L  P  W  V  L  I  W  D  K  R  I  T  N  S  H  P  I  R  C  F  *  L  F  E  L  H  *  G  G  P  F  Y  I  *  T  F  L  *  *  C  M  *  E  F  S  Y  *  L  *  Q  Y  G  C  E  I  C  E  G  L  Q  L  K  C  S  S  N  K  C  T  Q  R  G  T  S  Q  A  R  C  *  V  W  *  *  K  K  R  A  S  R  P  C  D  S  V  A  M  A  *  R  *  S  K  W  *  Q  *  G  H  Q  C  *  V  R  W  N  F  S  K  F  W  L  C  P  G  L  L  K  P  S  F  L  S  E  *  F  I  S  F  *  T  S  P  Y  E  D  H  K  R  S  G  R  N  G  T  C  K  K  N  T  W  C  S  D  P  R  Y  S  R  *  F  Q  K  R  V  V  V  I  T  C  F  S  F  C  *  S  S  F  F  S  *  E  K  D </first_frame>
            <second_frame>  S  S  W  E  K  P  N  G  S  F  A  Q  R  L  S  S  L  H  T  N  S  V  F  N  S  S  A  A  V  G  K  G  S  Q  S  S  Q  S  Q  I  G  D  Y  W  H  A  N  G  G  S  S  R  L  R  P  G  C  A  G  E  I  P  I  R  S  G  F  Y  R  G  S  S  S  G  T  K  E  S  P  I  H  I  P  S  G  A  F  D  S  L  S  Y  I  K  G  D  R  F  T  S  E  R  S  S  N  N  A  C  E  N  F  L  I  S  S  N  N  M  D  V  K  S  A  K  G  F  N  L  N  V  L  A  T  S  A  L  S  E  E  P  P  R  R  D  V  E  Y  G  N  E  K  R  E  H  Q  D  P  V  T  V  L  P  W  L  K  G  K  A  N  G  N  N  E  G  I  N  A  R  L  G  G  T  S  A  N  S  G  F  V  Q  A  Y  S  N  P  P  F  C  Q  S  D  S  S  A  F  E  H  H  R  M  R  T  T  K  E  V  G  E  T  G  H  V  R  K  I  L  G  V  P  I  L  D  I  P  V  S  S  R  N  G  S  S  S  S  L  V  F  P  S  A  N  L  R  S  S  P  E  R  K   </second_frame>
            <third_frame>   L  L  G  R  S  Q  M  V  A  L  L  R  G  Y  P  R  C  I  Q  T  Q  F  S  T  H  L  Q  Q  L  V  R  V  H  S  H  L  R  A  K  L  G  T  I  G  M  L  M  V  A  V  L  G  C  V  L  D  V  P  V  R  Y  P  S  G  V  V  S  T  V  G  P  H  L  G  Q  K  N  H  Q  F  T  S  H  Q  V  L  L  T  L  *  A  T  L  R  G  T  V  L  H  L  N  V  P  L  I  M  H  V  R  I  F  L  L  A  L  T  I  W  M  *  N  L  R  R  A  S  T  *  M  F  *  Q  Q  V  H  S  A  R  N  L  P  G  E  M  L  S  M  V  M  K  K  E  S  I  K  T  L  *  Q  C  C  H  G  L  K  V  K  Q  M  V  T  M  R  A  S  M  L  G  *  V  E  L  Q  Q  I  L  A  L  S  R  L  T  Q  T  L  L  F  V  R  V  I  H  Q  L  L  N  I  T  V  *  G  P  Q  K  K  W  A  K  R  D  M  *  E  K  Y  L  V  F  R  S  S  I  F  P  L  V  P  E  T  G  R  R  H  H  L  F  F  L  L  L  I  F  V  L  L  L  R  E  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105492" stop="104716"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSWEKPNGSFAQRLSSLHTNSVFNSSAAVGKGSQSSQSQIGDYWHANGGSSRLRPGCAGEIPIRSGFYRGSSSGTKESPIHIPSGAFDSLSYIKGDRFTSERSSNNACENFLISSNNMDVKSAKGFNLNVLATSALSEEPPRRDVEYGNEKREHQDPVTVLPWLKGKANGNNEGINARLGGTSANSGFVQAYSNPPFCQSDSSAFEHHRMRTTKEVGETGHVRKILGVPILDIPVSSRNGSSSSLVFPSANLRSSPERK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 141 chains have been computed
$ 
$ memory statistics:
$ 244368 bytes spliced alignments in total
$ 122 spliced alignments have been stored
$ 2003 bytes was the average size of a spliced alignment
$ 30496 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1605 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 155 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:24:52
-->
