<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:27:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7153" ref_strand="+" ref_description="SGN-M7153 C2_At2g03420 [cosii_markers]">
      <seq>ttttcttgtgcttccctatcttcttcttctactactactttttggtctagtggaagcagagcaaaagcagaattatgactatggctactcctatttctccaatgaagcaattcccttcaactgctcttcaaccattcccatcaatctttcaaagaaaaccagtactaatctcttcacttagaaaaactcctcatcttttctcttattcatctcccaagtcattcgttccgctttctgcttgccttgctgttcttctatggtcctctcctgctaatgctggatttctttcgggttatactggtatagaatcagttcctggccctgaattacctaagattgagtttcttaatcgttggaacgataataatcagaaaaagtatgcagaactcgatgaaaaattcaaagagtcgcctttgcttaaacagttactcgaaaaatccaagcaaaataaagagaagaacaaaaggtcaattgaagacaagtattgtttacgcggagctgaatggggagttggagattgctcaacagcaggaatgacaccagaagacagagatagcttcattgccatgttgaagcagaaggctggtgtagaatgaacgcgcaattatgtactactctttatcgatgatgctggtttcaatttccgaatgcagagagtgaagattgaagcgtaatgctgaaaattcgcgataggagacggggagtttgattgagccttataacctgttagtattagcataagcacaagaacatgtcaaaagggacatttcttctattgttctatagcttgtaaatacattgcactagtaaattatgagcttgagagtggcatattgatagcgtctgatataccgtcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="68657" stop="70770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68957" g_stop="69226" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69227" i_stop="69621" i_length="395">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69622" g_stop="69711" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="360" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69712" i_stop="69790" i_length="79">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69791" g_stop="69887" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="457" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69888" i_stop="70067" i_length="180">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70068" g_stop="70470" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="860" r_length="403" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-M7153" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68957" e_stop="69226"/>
          <exon e_start="69622" e_stop="69711"/>
          <exon e_start="69791" e_stop="69887"/>
          <exon e_start="70068" e_stop="70470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTGTGCTTCCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCAGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTGGTAATGTTATCTTGATCAATCTTTTTTACTTTGCCCCTTTAGCCTTTTCTTATGTTTGTTTACATAGTCTTGATGTTATATGTATTGAGCTATGACTATAGAAGCGGATCTAGAATTTGAATTTCAGGACGTAACATAAGCATATACATTTTGTCCATTCAAGAGGAGTATTATTCTCTTTGATCCATCGTCGTGTAAGTGAGGAATGTCAGTCATCATAGTCCCAACTTAAAACTATTAGTTTTTTCGTCGAACTTGTGTATTCAAGGGATATAGAGGGTTCATATTCATTAGGAAATGATAAACTGTTTTGTTTATCTAATTTAGTTTCAATACAATTTATTCGTTTTCAATGTTTAGATACTAATAAAGATGTCATTCTGTTCCAATTGCAGCTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACGGTATTATCTCAAACTAACATTGTAAATAAAACTCCGCTAACATTTTGCAGTAAGATCATGATATGCTCTTTTGTTGCAGATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAAGTAAGTTTTCTTTCATCTCGAATGATTAGCTTTTGAATACACACACGAGATATCATTTCTGTAGTATGATTTTTCGACGAAGGAGTGAAAATTGATGATGCACTTTCATATGTTGTCCTTTTAGTGATCACACCGATCAAGTACCAAACAAATGGTAATTTTTCGTGTTTTTTTTGTCAGGAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTTGAAGCAGAAGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTCTTTATCGATGATGCTGGTTTCAATTTCCGAATGCAGAGAGTGAAGATTGAAGCGTAATGCTGAAAATTCGCGATAGGAGACGGGGAGTTTGATTGAGCCTTATAACCTGTTAGTATTAGCATAAGCACAAGAACATGTCAAAAGGGACATTTCTTCTATTGTTCTATAGCTTGTAAATACATTGCACTAGTAAATTATGAGCTTGAGAGTGGCATATTGATAGCGTCTGATATACCGTCAACT</genome_strand>
        <mrna_strand>TTTTCTTGTGCTTCCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCAGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................CTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACG...............................................................................ATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAA....................................................................................................................................................................................GAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTTGAAGCAGAAGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTCTTTATCGATGATGCTGGTTTCAATTTCCGAATGCAGAGAGTGAAGATTGAAGCGTAATGCTGAAAATTCGCGATAGGAGACGGGGAGTTTGATTGAGCCTTATAACCTGTTAGTATTAGCATAAGCACAAGAACATGTCAAAAGGGACATTTCTTCTATTGTTCTATAGCTTGTAAATACATTGCACTAGTAAATTATGAGCTTGAGAGTGGCATATTGATAGCGTCTGATATACCGTCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1502" ref_strand="+" ref_description="SGN-M1502 T0619 [cos_markers]">
      <seq>ttttcttgtgcttccctatcttcttcttctactactactttttggtctagtggaagcagagcaaaagcagaattatgactatggctactcctatttctccaatgaagcaattcccttcaactgctcttcaaccattcccatcaatctttcaaagaaaaccagtactaatctcttcacttagaaaaactcctcatcttttctcttattcatctcccaagtcattcgttccgctttctgcttgccttgctgttcttctatggtcctctcctgctaatgctggatttctttcgggttatactggtatagaatcagttcctggccctgaattacctaagattgagtttcttaatcgttggaacgataataatcagaaaaagtatgcagaactcgatgaaaaattcaaagagtcgcctttgctcaaacagttactcgaaaaatccaagcaaaataaagagaagaacaaaaggtcaattgaagacaagtattgtttacgcggagctgaatggggagttggggattgctcaacagcaggaatgacaccagaagacagagatagcttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0193P17-ddyBM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0193P17.1" temp_strand="+" temp_description="C05HBa0193P17.1  AC232704.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0193P17 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="68657" stop="70473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68957" g_stop="69226" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69227" i_stop="69621" i_length="395">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69622" g_stop="69711" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="360" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69712" i_stop="69790" i_length="79">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69791" g_stop="69887" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="457" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69888" i_stop="70067" i_length="180">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70068" g_stop="70173" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="563" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0193P17.1" gen_strand="+" ref_id="SGN-M1502" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0193P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68957" e_stop="69226"/>
          <exon e_start="69622" e_stop="69711"/>
          <exon e_start="69791" e_stop="69887"/>
          <exon e_start="70068" e_stop="70173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTGTGCTTCCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCAGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTGGTAATGTTATCTTGATCAATCTTTTTTACTTTGCCCCTTTAGCCTTTTCTTATGTTTGTTTACATAGTCTTGATGTTATATGTATTGAGCTATGACTATAGAAGCGGATCTAGAATTTGAATTTCAGGACGTAACATAAGCATATACATTTTGTCCATTCAAGAGGAGTATTATTCTCTTTGATCCATCGTCGTGTAAGTGAGGAATGTCAGTCATCATAGTCCCAACTTAAAACTATTAGTTTTTTCGTCGAACTTGTGTATTCAAGGGATATAGAGGGTTCATATTCATTAGGAAATGATAAACTGTTTTGTTTATCTAATTTAGTTTCAATACAATTTATTCGTTTTCAATGTTTAGATACTAATAAAGATGTCATTCTGTTCCAATTGCAGCTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACGGTATTATCTCAAACTAACATTGTAAATAAAACTCCGCTAACATTTTGCAGTAAGATCATGATATGCTCTTTTGTTGCAGATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAAGTAAGTTTTCTTTCATCTCGAATGATTAGCTTTTGAATACACACACGAGATATCATTTCTGTAGTATGATTTTTCGACGAAGGAGTGAAAATTGATGATGCACTTTCATATGTTGTCCTTTTAGTGATCACACCGATCAAGTACCAAACAAATGGTAATTTTTCGTGTTTTTTTTGTCAGGAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATT</genome_strand>
        <mrna_strand>TTTTCTTGTGCTTCCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCAGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................CTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACG...............................................................................ATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTCAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAA....................................................................................................................................................................................GAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGGGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="68957" PGL_stop="70470"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68957" e_stop="69226"/>
            <exon e_start="69622" e_stop="69711"/>
            <exon e_start="69791" e_stop="69887"/>
            <exon e_start="70068" e_stop="70470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68957" e_stop="69226" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="69227" i_stop="69621" i_length="395"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69622" e_stop="69711" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.989">
            <gDNA_intron_boundary i_start="69712" i_stop="69790" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69791" e_stop="69887" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.991">
            <gDNA_intron_boundary i_start="69888" i_stop="70067" i_length="180"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70068" e_stop="70470" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68957" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69887"/>
              <exon start="70068" stop="70470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68957" stop="69226"/>
              <exon start="69622" stop="69711"/>
              <exon start="69791" stop="69887"/>
              <exon start="70068" stop="70173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1502" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTTGTGCTTCCCTATCTTCTTCTTCTACTACTACTTTTTGGTCTAGTGGAAGCAGAGCAAAAGCAGAATTATGACTATGGCTACTCCTATTTCTCCAATGAAGCAATTCCCTTCAACTGCTCTTCAACCATTCCCATCAATCTTTCAAAGAAAACCAGTACTAATCTCTTCACTTAGAAAAACTCCTCATCTTTTCTCTTATTCATCTCCCAAGTCATTCGTTCCGCTTTCTGCTTGCCTTGCTGTTCTTCTATGGTCCTCTCCTG : CTAATGCTGGATTTCTTTCGGGTTATACTGGTATAGAATCAGTTCCTGGCCCTGAATTACCTAAGATTGAGTTTCTTAATCGTTGGAACG : ATAATAATCAGAAAAAGTATGCAGAACTCGATGAAAAATTCAAAGAGTCGCCTTTGCTTAAACAGTTACTCGAAAAATCCAAGCAAAATAAAGAGAA : GAACAAAAGGTCAATTGAAGACAAGTATTGTTTACGCGGAGCTGAATGGGGAGTTGGAGATTGCTCAACAGCAGGAATGACACCAGAAGACAGAGATAGCTTCATTGCCATGTTGAAGCAGAAGGCTGGTGTAGAATGAACGCGCAATTATGTACTACTCTTTATCGATGATGCTGGTTTCAATTTCCGAATGCAGAGAGTGAAGATTGAAGCGTAATGCTGAAAATTCGCGATAGGAGACGGGGAGTTTGATTGAGCCTTATAACCTGTTAGTATTAGCATAAGCACAAGAACATGTCAAAAGGGACATTTCTTCTATTGTTCTATAGCTTGTAAATACATTGCACTAGTAAATTATGAGCTTGAGAGTGGCATATTGATAGCGTCTGATATACCGTCAACT</gDNA_template>
            <first_frame> F  S  C  A  S  L  S  S  S  S  T  T  T  F  W  S  S  G  S  R  A  K  A  E  L  *  L  W  L  L  L  F  L  Q  *  S  N  S  L  Q  L  L  F  N  H  S  H  Q  S  F  K  E  N  Q  Y  *  S  L  H  L  E  K  L  L  I  F  S  L  I  H  L  P  S  H  S  F  R  F  L  L  A  L  L  F  F  Y  G  P  L  L  :  L  M  L  D  F  F  R  V  I  L  V  *  N  Q  F  L  A  L  N  Y  L  R  L  S  F  L  I  V  G  T  :  I  I  I  R  K  S  M  Q  N  S  M  K  N  S  K  S  R  L  C  L  N  S  Y  S  K  N  P  S  K  I  K  R   : R  T  K  G  Q  L  K  T  S  I  V  Y  A  E  L  N  G  E  L  E  I  A  Q  Q  Q  E  *  H  Q  K  T  E  I  A  S  L  P  C  *  S  R  R  L  V  *  N  E  R  A  I  M  Y  Y  S  L  S  M  M  L  V  S  I  S  E  C  R  E  *  R  L  K  R  N  A  E  N  S  R  *  E  T  G  S  L  I  E  P  Y  N  L  L  V  L  A  *  A  Q  E  H  V  K  R  D  I  S  S  I  V  L  *  L  V  N  T  L  H  *  *  I  M  S  L  R  V  A  Y  *  *  R  L  I  Y  R  Q   </first_frame>
            <second_frame>  F  L  V  L  P  Y  L  L  L  L  L  L  L  F  G  L  V  E  A  E  Q  K  Q  N  Y  D  Y  G  Y  S  Y  F  S  N  E  A  I  P  F  N  C  S  S  T  I  P  I  N  L  S  K  K  T  S  T  N  L  F  T  *  K  N  S  S  S  F  L  L  F  I  S  Q  V  I  R  S  A  F  C  L  P  C  C  S  S  M  V  L  S  C :   *  C  W  I  S  F  G  L  Y  W  Y  R  I  S  S  W  P  *  I  T  *  D  *  V  S  *  S  L  E  R :   *  *  S  E  K  V  C  R  T  R  *  K  I  Q  R  V  A  F  A  *  T  V  T  R  K  I  Q  A  K  *  R  E  :  E  Q  K  V  N  *  R  Q  V  L  F  T  R  S  *  M  G  S  W  R  L  L  N  S  R  N  D  T  R  R  Q  R  *  L  H  C  H  V  E  A  E  G  W  C  R  M  N  A  Q  L  C  T  T  L  Y  R  *  C  W  F  Q  F  P  N  A  E  S  E  D  *  S  V  M  L  K  I  R  D  R  R  R  G  V  *  L  S  L  I  T  C  *  Y  *  H  K  H  K  N  M  S  K  G  T  F  L  L  L  F  Y  S  L  *  I  H  C  T  S  K  L  *  A  *  E  W  H  I  D  S  V  *  Y  T  V  N  </second_frame>
            <third_frame>   F  L  C  F  P  I  F  F  F  Y  Y  Y  F  L  V  *  W  K  Q  S  K  S  R  I  M  T  M  A  T  P  I  S  P  M  K  Q  F  P  S  T  A  L  Q  P  F  P  S  I  F  Q  R  K  P  V  L  I  S  S  L  R  K  T  P  H  L  F  S  Y  S  S  P  K  S  F  V  P  L  S  A  C  L  A  V  L  L  W  S  S  P   : A  N  A  G  F  L  S  G  Y  T  G  I  E  S  V  P  G  P  E  L  P  K  I  E  F  L  N  R  W  N   : D  N  N  Q  K  K  Y  A  E  L  D  E  K  F  K  E  S  P  L  L  K  Q  L  L  E  K  S  K  Q  N  K  E  K :   N  K  R  S  I  E  D  K  Y  C  L  R  G  A  E  W  G  V  G  D  C  S  T  A  G  M  T  P  E  D  R  D  S  F  I  A  M  L  K  Q  K  A  G  V  E  *  T  R  N  Y  V  L  L  F  I  D  D  A  G  F  N  F  R  M  Q  R  V  K  I  E  A  *  C  *  K  F  A  I  G  D  G  E  F  D  *  A  L  *  P  V  S  I  S  I  S  T  R  T  C  Q  K  G  H  F  F  Y  C  S  I  A  C  K  Y  I  A  L  V  N  Y  E  L  E  S  G  I  L  I  A  S  D  I  P  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0193P17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69007" stop="69226"/>
                    <exon start="69622" stop="69711"/>
                    <exon start="69791" stop="69887"/>
                    <exon start="70068" stop="70206"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WKQSKSRIMTMATPISPMKQFPSTALQPFPSIFQRKPVLISSLRKTPHLFSYSSPKSFVPLSACLAVLLWSSPANAGFLSGYTGIESVPGPELPKIEFLNRWNDNNQKKYAELDEKFKESPLLKQLLEKSKQNKEKNKRSIEDKYCLRGAEWGVGDCSTAGMTPEDRDSFIAMLKQKAGVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 7 chains have been computed
$ 
$ memory statistics:
$ 4560 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 5624 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5624 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 7 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:27:52
-->
