<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:24:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="8057" stop="8952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8357" g_stop="8678" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8357" e_stop="8678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATACCGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAACATTGTATTTCACTGCAATTGTATAATTTGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATTTTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACA-AAATTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="8057" stop="8952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8357" g_stop="8662" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8357" e_stop="8662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATACCGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAACATTGTATTTCACTGCAATTGTATAATTTGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATTTTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAAATTATACACTTCTGT</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="8058" stop="9105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8358" g_stop="8805" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8358" e_stop="8805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATACCGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAACATTGTATTTCACTGCAATTGTATAATTTGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATTTTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACA-AAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTCCTGGGAGAGAGACGCTGGCAAATTTTTAGATAATGTTTGCTATGGAGCACAAATAAAACAAACCCTAGCTATTCCATTTAATTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343808" ref_strand="+" ref_description="SGN-E343808 [cTOF-12-M9]">
      <seq>aatcttttactcttcttcatcttcattcttccccaaaaaacctcagcttaatccccagatgcttatactgataactgataaatccaagtagataacgaagaagaagaagaagatatacctgttaatcccagaagctttgagctttttccgagttccatttcaagttttgcagtttctgttatagaaatgcttagcttaggaagttatccaaggcaaccccattgttgtgccagcacaatttcacaatgtcttcctcttttttgcaagattcctcaaccccaattgttttttacttcaaatacagtgacccatttaaggattcgttctcttattgagcaaaaacaactggnnggtgtgcgtttttgcacgcaaggatgaagaaaaaagggggaatagtgtggtagaaatggaagaaattgaggattttgatgatgactatgacgacgacgacgatgattttctaggggatgaggaagaggttgacggagacgacgacgacgatgatgaggtgattattccattaagaaatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="15150" stop="16281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15450" g_stop="15981" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E343808" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15450" e_stop="15981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTTTACTCTTCTTCATCTTCATTCTTCCCCAAAAAACCTCAGCTTAATCCCCAGATGCTTATACTGATAACTGATAAATCCAAGTAGATAACGAAGAAGAAGAAGAAGATATACCTGTTAATCCCAGAAGATTTGAGCTTTTTCCGAGTTCCATTTCAAGTTTTGCAGTTTCTGTTATAGAAATGCTTAGCTTAGGAAGTTATCCAAGGCAACCCCATTGTTGTGCCAGCACAATTTCACAATGTCTTCCTCTTTTTTGCAAGATTCCTCAACCCCAATTGTTTTTTACTTCAAATACAGTGACCCATTTAAGGATTCGTTCTCTTATTGAGCAAAAACGAACTGG--GGTGTGCGTTTTTGCACGCAAGGATGAAGAAAAAAGGGGGAATAGTGTGGTAGAAATGGAAGAAATTGAGGATTTTGATGATGACTATGACGACGACGACGATGATTTTCTAGGGGATGAGGAAGAGGTTGACGGAGACGACGACGACGATGATGAGGTGATTATTCCATTAAGAAATATGA</genome_strand>
        <mrna_strand>AATCTTTTACTCTTCTTCATCTTCATTCTTCCCCAAAAAACCTCAGCTTAATCCCCAGATGCTTATACTGATAACTGATAAATCCAAGTAGATAACGAAGAAGAAGAAGAAGATATACCTGTTAATCCCAGAAGCTTTGAGCTTTTTCCGAGTTCCATTTCAAGTTTTGCAGTTTCTGTTATAGAAATGCTTAGCTTAGGAAGTTATCCAAGGCAACCCCATTGTTGTGCCAGCACAATTTCACAATGTCTTCCTCTTTTTTGCAAGATTCCTCAACCCCAATTGTTTTTTACTTCAAATACAGTGACCCATTTAAGGATTCGTTCTCTTATTGAGCAAAAAC-AACTGGNNGGTGTGCGTTTTTGCACGCAAGGATGAAGAAAAAAGGGGGAATAGTGTGGTAGAAATGGAAGAAATTGAGGATTTTGATGATGACTATGACGACGACGACGATGATTTTCTAGGGGATGAGGAAGAGGTTGACGGAGACGACGACGACGATGATGAGGTGATTATTCCATTAAGAAATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459803" ref_strand="+" ref_description="SGN-E459803 [cPRO-29-A19]">
      <seq>cttcattcttccccaaaaaacctcagctaaatccccagatgcttatactgataactggtaaacccgagtagataacgaagaagaagaagaagtcgatatacctgttaatccaagaaaatttgagctttttccgagttccatttcaagttttgcagtttctgttatagaaatgcttagcttaggaagttatccaaggaaaccccattgttgtgtcagcccaatttcacaatgtcttcctcttttttccaagattcctcgaacccagttgttttttacctcaaataaagtgacccatttaaggattcgttctcttattaggcaaaaacgaactgggagttgcgtttttgcacgcaaggatgaagaaaaaagggggaatggtgtggtagaaatggaagaaattgaggattttgatgatgactatgacgatgatgatcttgatgtggatgattttctaggggatgaggaagatgttgatggagatgatgatgatgatgaggtgattattccattgagaaatatgaagaaatggttagaaaacaagcctcgtgggtttggagtagataaagactatgatacttcagttgaagataagctgatggaagaaattgagcagagtagaaaagctcagcttgctaatatcaataagctcaagaacagtccagttaaagcaaataccaaacaagttcagcaggataaagttgttcaggatggactctgtgtgcgcttggtcaatcttcctaagaaatgaacattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="15170" stop="17172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15470" g_stop="16158" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16159" i_stop="16814" i_length="656">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16815" g_stop="16872" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="755" r_length="57" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E459803" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15470" e_stop="16158"/>
          <exon e_start="16815" e_stop="16872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTCTTCCCCAAAAAACCTCAGCTTAATCCCCAGATGCTTATACTGATAACTGATAAATCCAAGTAGATAACGAAGAAGAAGAAGAA---GATATACCTGTTAATCCCAGAAGATTTGAGCTTTTTCCGAGTTCCATTTCAAGTTTTGCAGTTTCTGTTATAGAAATGCTTAGCTTAGGAAGTTATCCAAGGCAACCCCATTGTTGTGCCAGCACAATTTCACAATGTCTTCCTCTTTTTTGCAAGATTCCTCAACCCCAATTGTTTTTTACTTCAAATACAGTGACCCATTTAAGGATTCGTTCTCTTATTGAGCAAAAACGAACTGGGGTGTGCGTTTTTGCACGCAAGGATGAAGAAAAAAGGGGGAATAGTGTGGTAGAAATGGAAGAAATTGAGGATTTTGATGATGACTATGAC---GACGA-C--GA---CGATGATTTTCTAGGGGATGAGGAAGAGGTTGACGGAGACGACGACGACGATGATGAGGTGATTATTCCATTAAGAAATATGAAGAAATGGTTAGAAAACAAGCCGCGTGGGTTTGGAGTAGATAAAGAGTATGATACTTCAGTTGAAGATAAGCTGATGGAAGAAATTGAACAGAGTAGAAAAGCTCAGCTTGCTAATATCAATAAGCTCAAAAACAATCCAGTTAAAGCAAATACCAAACAAGTTCAGCAGGATAAAGGTAACTTCTTTTTGTATATTTGGGTCTTAGATTATATCATCTATGAATGCAACTGAATTGATAGGAAACAATGAACAAGTTTATGTATTTTGTTCTTAGTTAGTTACCCTTGACAATGACTCCTTTATCACCTTAAGGACTTAATAGGAGCTGAGCTGAGCATTTGTTCTACTATGATGTTCGGGTCAGCTTGTGCACAACTCGATTAATTTCAATGGATACTTGCTAGTTGCTACCTCTAACCAAGATATATTTTTTTGTTAGCTTTTGGATGCAATCTGGTGATTGCACATGGTGTAGATCAGTAGATGTAATGCTACACACAAAATAGAGGGATTCCACAACCTGTAATTATGTCTTTAATTGTTCATTCTTAATTCGAACCATCATTTAAAAAGGACTAATATCAGGGCTGAAATTTGGTGTATCGCAACCCAAGTCAGACGTTTGAGCTTGATGTTGGAACTAAAATTACGAATGTTATGGAATCAAACAACTTTAACTAGTTAAGTGATCGGGAGTATTACTTGTAGATGTTTAGTGTAGAGCAAATAAGTTTGGAGGATAAAGTAGAGACCTTAAGGAGCTCCAATGACTTCTGCATCCTCTACTCTTTTAATAAGCAGTATTTCACTTACGTTCTACAATTTCTAAAGTTGTTCAGGATGGACTCTGTGTGCGCTTGGTCAATCTTCCTAAGAAAATGAACGTTGA</genome_strand>
        <mrna_strand>CTTCATTCTTCCCCAAAAAACCTCAGCTAAATCCCCAGATGCTTATACTGATAACTGGTAAACCCGAGTAGATAACGAAGAAGAAGAAGAAGTCGATATACCTGTTAATCCAAGAAAATTTGAGCTTTTTCCGAGTTCCATTTCAAGTTTTGCAGTTTCTGTTATAGAAATGCTTAGCTTAGGAAGTTATCCAAGGAAACCCCATTGTTGTGTCAGCCCAATTTCACAATGTCTTCCTCTTTTTTCCAAGATTCCTCGAACCCAGTTGTTTTTTACCTCAAATAAAGTGACCCATTTAAGGATTCGTTCTCTTATTAGGCAAAAACGAACTGGGAGTTGCGTTTTTGCACGCAAGGATGAAGAAAAAAGGGGGAATGGTGTGGTAGAAATGGAAGAAATTGAGGATTTTGATGATGACTATGACGATGATGATCTTGATGTGGATGATTTTCTAGGGGATGAGGAAGATGTTGA-TG-GA-GATGATGATGATGATGAGGTGATTATTCCATTGAGAAATATGAAGAAATGGTTAGAAAACAAGCCTCGTGGGTTTGGAGTAGATAAAGACTATGATACTTCAGTTGAAGATAAGCTGATGGAAGAAATTGAGCAGAGTAGAAAAGCTCAGCTTGCTAATATCAATAAGCTCAAGAACAGTCCAGTTAAAGCAAATACCAAACAAGTTCAGCAGGATAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCAGGATGGACTCTGTGTGCGCTTGGTCAATCTTCCTAAG-AAATGAACATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317919" ref_strand="+" ref_description="SGN-E317919 [cTOA-30-K21]">
      <seq>ttaatccccagatgcttatactgataactgataaatccaagtagataacgaagaagaagaagaagatatacctgttaatcccagaagatttgagctttttccgagttccatttcaagttttgcagtttctgttatagaaatgcttagcttaggaagttatccaaggcaaccccattgttgtgccagcacaatttcacaatgtcttcctcttttttgcaagattcctcaaccccaattgttttttacttcaaatacagtgacccatttaaggattcgttctcttattgagcaaaaacgaactggggtgtgcgtttttgcacgcaaggatgaagaaaaaagggggaatagtgtggtagaaatggaagaaattgaggattttgatgatgactatgacgacgacgacgatgattttctaggggatgaggaagaggttgacggagacgacgacgacgatgatgaggtgattattccattaagaaatatgaagaaatggttagaaaacaagccgcgtgggtttggagtagataaagagtatgatacttcagttgaagataagctgatggaagnaattgaacagagtagaaaagctcagcttgctaatatcaataagctcaaaaacaatccagttaaagcaaataccaaacaagttcagcagggataaagttgttcaggatggactctgtgtgcgcttggtcaatcttccctaagaaatgaacgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="15197" stop="17171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15497" g_stop="16158" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16159" i_stop="16814" i_length="656">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16815" g_stop="16871" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="720" r_length="57" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E317919" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15497" e_stop="16158"/>
          <exon e_start="16815" e_stop="16871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCCCCAGATGCTTATACTGATAACTGATAAATCCAAGTAGATAACGAAGAAGAAGAAGAAGATATACCTGTTAATCCCAGAAGATTTGAGCTTTTTCCGAGTTCCATTTCAAGTTTTGCAGTTTCTGTTATAGAAATGCTTAGCTTAGGAAGTTATCCAAGGCAACCCCATTGTTGTGCCAGCACAATTTCACAATGTCTTCCTCTTTTTTGCAAGATTCCTCAACCCCAATTGTTTTTTACTTCAAATACAGTGACCCATTTAAGGATTCGTTCTCTTATTGAGCAAAAACGAACTGGGGTGTGCGTTTTTGCACGCAAGGATGAAGAAAAAAGGGGGAATAGTGTGGTAGAAATGGAAGAAATTGAGGATTTTGATGATGACTATGACGACGACGACGATGATTTTCTAGGGGATGAGGAAGAGGTTGACGGAGACGACGACGACGATGATGAGGTGATTATTCCATTAAGAAATATGAAGAAATGGTTAGAAAACAAGCCGCGTGGGTTTGGAGTAGATAAAGAGTATGATACTTCAGTTGAAGATAAGCTGATGGAAGAAATTGAACAGAGTAGAAAAGCTCAGCTTGCTAATATCAATAAGCTCAAAAACAATCCAGTTAAAGCAAATACCAAACAAGTTCAGCA-GGATAAAGGTAACTTCTTTTTGTATATTTGGGTCTTAGATTATATCATCTATGAATGCAACTGAATTGATAGGAAACAATGAACAAGTTTATGTATTTTGTTCTTAGTTAGTTACCCTTGACAATGACTCCTTTATCACCTTAAGGACTTAATAGGAGCTGAGCTGAGCATTTGTTCTACTATGATGTTCGGGTCAGCTTGTGCACAACTCGATTAATTTCAATGGATACTTGCTAGTTGCTACCTCTAACCAAGATATATTTTTTTGTTAGCTTTTGGATGCAATCTGGTGATTGCACATGGTGTAGATCAGTAGATGTAATGCTACACACAAAATAGAGGGATTCCACAACCTGTAATTATGTCTTTAATTGTTCATTCTTAATTCGAACCATCATTTAAAAAGGACTAATATCAGGGCTGAAATTTGGTGTATCGCAACCCAAGTCAGACGTTTGAGCTTGATGTTGGAACTAAAATTACGAATGTTATGGAATCAAACAACTTTAACTAGTTAAGTGATCGGGAGTATTACTTGTAGATGTTTAGTGTAGAGCAAATAAGTTTGGAGGATAAAGTAGAGACCTTAAGGAGCTCCAATGACTTCTGCATCCTCTACTCTTTTAATAAGCAGTATTTCACTTACGTTCTACAATTTCTAAAGTTGTTCAGGATGGACTCTGTGTGCGCTTGGTCAATCTTCCTAAGAAAATGAACGTTG</genome_strand>
        <mrna_strand>TTAATCCCCAGATGCTTATACTGATAACTGATAAATCCAAGTAGATAACGAAGAAGAAGAAGAAGATATACCTGTTAATCCCAGAAGATTTGAGCTTTTTCCGAGTTCCATTTCAAGTTTTGCAGTTTCTGTTATAGAAATGCTTAGCTTAGGAAGTTATCCAAGGCAACCCCATTGTTGTGCCAGCACAATTTCACAATGTCTTCCTCTTTTTTGCAAGATTCCTCAACCCCAATTGTTTTTTACTTCAAATACAGTGACCCATTTAAGGATTCGTTCTCTTATTGAGCAAAAACGAACTGGGGTGTGCGTTTTTGCACGCAAGGATGAAGAAAAAAGGGGGAATAGTGTGGTAGAAATGGAAGAAATTGAGGATTTTGATGATGACTATGACGACGACGACGATGATTTTCTAGGGGATGAGGAAGAGGTTGACGGAGACGACGACGACGATGATGAGGTGATTATTCCATTAAGAAATATGAAGAAATGGTTAGAAAACAAGCCGCGTGGGTTTGGAGTAGATAAAGAGTATGATACTTCAGTTGAAGATAAGCTGATGGAAGNAATTGAACAGAGTAGAAAAGCTCAGCTTGCTAATATCAATAAGCTCAAAAACAATCCAGTTAAAGCAAATACCAAACAAGTTCAGCAGGGATAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCAGGATGGACTCTGTGTGCGCTTGGTCAATCTTCCCTAAGAAATGAACGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318037" ref_strand="+" ref_description="SGN-E318037 [cTOA-30-L24]">
      <seq>ttaatccccagatgcttatactgataactgatgaatccaagtagataacgaagaataagaagaagatatacctgttaatcccagaagatttgagctttttccgagttccatttcaagttttgcagtttctgttatagaaatgcttaacttaggaagttatccaaggcaaccccattgttgtgccagcacgatttcacaatgtcttcctcttttttgcaagattcctcagccccaattgttttttacttcaaatacagtgacccatttaaggattcgttctcttattgagcaaaaacgaactggggtgtgcgtttttgcacgctaggatgaagaaaaaagggggaatagtgtggcacaaatggaataaattgaggattttgatgatgactatgacgacgacgacgatgattttctaggggatgacgaataggttgacggagacgactactacgatgatgaggtgattattccattacgaaatatgacgaaatggttataaaacaagccgcgtgggtttggagtacataaagagtatgatacttcagttgatgataagctgatggaagaaattgaacagagtagaaaagctcaacttgctaatatcaataagctcaataacaatccagttaaagcaaataccatactagttcagcatgataaagctgttcacgatggactctgtgtgcgcttgggtcatcttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="15197" stop="17154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15497" g_stop="16158" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16159" i_stop="16814" i_length="656">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16815" g_stop="16854" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="702" r_length="40" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E318037" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15497" e_stop="16158"/>
          <exon e_start="16815" e_stop="16854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCCCCAGATGCTTATACTGATAACTGATAAATCCAAGTAGATAACGAAGAAGAAGAAGAAGATATACCTGTTAATCCCAGAAGATTTGAGCTTTTTCCGAGTTCCATTTCAAGTTTTGCAGTTTCTGTTATAGAAATGCTTAGCTTAGGAAGTTATCCAAGGCAACCCCATTGTTGTGCCAGCACAATTTCACAATGTCTTCCTCTTTTTTGCAAGATTCCTCAACCCCAATTGTTTTTTACTTCAAATACAGTGACCCATTTAAGGATTCGTTCTCTTATTGAGCAAAAACGAACTGGGGTGTGCGTTTTTGCACGCAAGGATGAAGAAAAAAGGGGGAATAGTGTGGTAGAAATGGAAGAAATTGAGGATTTTGATGATGACTATGACGACGACGACGATGATTTTCTAGGGGATGAGGAAGAGGTTGACGGAGACGACGACGACGATGATGAGGTGATTATTCCATTAAGAAATATGAAGAAATGGTTAGAAAACAAGCCGCGTGGGTTTGGAGTAGATAAAGAGTATGATACTTCAGTTGAAGATAAGCTGATGGAAGAAATTGAACAGAGTAGAAAAGCTCAGCTTGCTAATATCAATAAGCTCAAAAACAATCCAGTTAAAGCAAATACCAAACAAGTTCAGCAGGATAAAGGTAACTTCTTTTTGTATATTTGGGTCTTAGATTATATCATCTATGAATGCAACTGAATTGATAGGAAACAATGAACAAGTTTATGTATTTTGTTCTTAGTTAGTTACCCTTGACAATGACTCCTTTATCACCTTAAGGACTTAATAGGAGCTGAGCTGAGCATTTGTTCTACTATGATGTTCGGGTCAGCTTGTGCACAACTCGATTAATTTCAATGGATACTTGCTAGTTGCTACCTCTAACCAAGATATATTTTTTTGTTAGCTTTTGGATGCAATCTGGTGATTGCACATGGTGTAGATCAGTAGATGTAATGCTACACACAAAATAGAGGGATTCCACAACCTGTAATTATGTCTTTAATTGTTCATTCTTAATTCGAACCATCATTTAAAAAGGACTAATATCAGGGCTGAAATTTGGTGTATCGCAACCCAAGTCAGACGTTTGAGCTTGATGTTGGAACTAAAATTACGAATGTTATGGAATCAAACAACTTTAACTAGTTAAGTGATCGGGAGTATTACTTGTAGATGTTTAGTGTAGAGCAAATAAGTTTGGAGGATAAAGTAGAGACCTTAAGGAGCTCCAATGACTTCTGCATCCTCTACTCTTTTAATAAGCAGTATTTCACTTACGTTCTACAATTTCTAAAGTTGTTCAGGATGGACTCTGTGTGCGCTTGGTCAATCTTCC</genome_strand>
        <mrna_strand>TTAATCCCCAGATGCTTATACTGATAACTGATGAATCCAAGTAGATAACGAAGAATAAGAAGAAGATATACCTGTTAATCCCAGAAGATTTGAGCTTTTTCCGAGTTCCATTTCAAGTTTTGCAGTTTCTGTTATAGAAATGCTTAACTTAGGAAGTTATCCAAGGCAACCCCATTGTTGTGCCAGCACGATTTCACAATGTCTTCCTCTTTTTTGCAAGATTCCTCAGCCCCAATTGTTTTTTACTTCAAATACAGTGACCCATTTAAGGATTCGTTCTCTTATTGAGCAAAAACGAACTGGGGTGTGCGTTTTTGCACGCTAGGATGAAGAAAAAAGGGGGAATAGTGTGGCACAAATGGAATAAATTGAGGATTTTGATGATGACTATGACGACGACGACGATGATTTTCTAGGGGATGACGAATAGGTTGACGGAGACGACTACTACGATGATGAGGTGATTATTCCATTACGAAATATGACGAAATGGTTATAAAACAAGCCGCGTGGGTTTGGAGTACATAAAGAGTATGATACTTCAGTTGATGATAAGCTGATGGAAGAAATTGAACAGAGTAGAAAAGCTCAACTTGCTAATATCAATAAGCTCAATAACAATCCAGTTAAAGCAAATACCATACTAGTTCAGCATGATAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTCACGATGGACTCTGTGTGCGCTTGGGTCATCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317846" ref_strand="+" ref_description="SGN-E317846 [cTOA-30-L21]">
      <seq>ttaatccccagatgcttatactgataactgataaatccaagtagataacgaagaagaagaagaagatatacctgttaatcccagaagatttgagctttttccgagttccatttcaagttttgcagtttctgttatagaaatgcttagcttaggaagttatccaaggcaaccccattgttgtgccagcacaatttcacaatgtcttcctcttttttgcaagattcctcaaccccaattgttttttacttcaaatacagtgacccatttaaggattcgttctcttattgagcaaaaacgaactggggtgtgcgtttttgcacgcaaggatgaagaaaaaagggggaatagtgtggtagaaatggaagaaattgaggattttgatgatgactatgacgacgacgacgatgattttctaggggatgaggaagaggttgacggagacgacgacgacgatgatgaggtgattattccattaagaaatatgaagaaatggttagaaaacaagccgcgtgggtttggagtagataaagagtatgatacttcagttgaagataagctgatggaagannattgacagagtagaaaagctcagcttgctaatatcaataagctcaaaaacaatccagttaaagcaaataccaaacaagttcagcaggataaagttgttcaggatggactctgtgtgcgcttgggtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="15197" stop="17150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15497" g_stop="16158" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16159" i_stop="16814" i_length="656">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16815" g_stop="16850" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="698" r_length="36" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E317846" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15497" e_stop="16158"/>
          <exon e_start="16815" e_stop="16850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCCCCAGATGCTTATACTGATAACTGATAAATCCAAGTAGATAACGAAGAAGAAGAAGAAGATATACCTGTTAATCCCAGAAGATTTGAGCTTTTTCCGAGTTCCATTTCAAGTTTTGCAGTTTCTGTTATAGAAATGCTTAGCTTAGGAAGTTATCCAAGGCAACCCCATTGTTGTGCCAGCACAATTTCACAATGTCTTCCTCTTTTTTGCAAGATTCCTCAACCCCAATTGTTTTTTACTTCAAATACAGTGACCCATTTAAGGATTCGTTCTCTTATTGAGCAAAAACGAACTGGGGTGTGCGTTTTTGCACGCAAGGATGAAGAAAAAAGGGGGAATAGTGTGGTAGAAATGGAAGAAATTGAGGATTTTGATGATGACTATGACGACGACGACGATGATTTTCTAGGGGATGAGGAAGAGGTTGACGGAGACGACGACGACGATGATGAGGTGATTATTCCATTAAGAAATATGAAGAAATGGTTAGAAAACAAGCCGCGTGGGTTTGGAGTAGATAAAGAGTATGATACTTCAGTTGAAGATAAGCTGATGGAAGA-AATTGAACAGAGTAGAAAAGCTCAGCTTGCTAATATCAATAAGCTCAAAAACAATCCAGTTAAAGCAAATACCAAACAAGTTCAGCAGGATAAAGGTAACTTCTTTTTGTATATTTGGGTCTTAGATTATATCATCTATGAATGCAACTGAATTGATAGGAAACAATGAACAAGTTTATGTATTTTGTTCTTAGTTAGTTACCCTTGACAATGACTCCTTTATCACCTTAAGGACTTAATAGGAGCTGAGCTGAGCATTTGTTCTACTATGATGTTCGGGTCAGCTTGTGCACAACTCGATTAATTTCAATGGATACTTGCTAGTTGCTACCTCTAACCAAGATATATTTTTTTGTTAGCTTTTGGATGCAATCTGGTGATTGCACATGGTGTAGATCAGTAGATGTAATGCTACACACAAAATAGAGGGATTCCACAACCTGTAATTATGTCTTTAATTGTTCATTCTTAATTCGAACCATCATTTAAAAAGGACTAATATCAGGGCTGAAATTTGGTGTATCGCAACCCAAGTCAGACGTTTGAGCTTGATGTTGGAACTAAAATTACGAATGTTATGGAATCAAACAACTTTAACTAGTTAAGTGATCGGGAGTATTACTTGTAGATGTTTAGTGTAGAGCAAATAAGTTTGGAGGATAAAGTAGAGACCTTAAGGAGCTCCAATGACTTCTGCATCCTCTACTCTTTTAATAAGCAGTATTTCACTTACGTTCTACAATTTCTAAAGTTGTTCAGGATGGACTCTGTGTGCGCTTGGTCAATC</genome_strand>
        <mrna_strand>TTAATCCCCAGATGCTTATACTGATAACTGATAAATCCAAGTAGATAACGAAGAAGAAGAAGAAGATATACCTGTTAATCCCAGAAGATTTGAGCTTTTTCCGAGTTCCATTTCAAGTTTTGCAGTTTCTGTTATAGAAATGCTTAGCTTAGGAAGTTATCCAAGGCAACCCCATTGTTGTGCCAGCACAATTTCACAATGTCTTCCTCTTTTTTGCAAGATTCCTCAACCCCAATTGTTTTTTACTTCAAATACAGTGACCCATTTAAGGATTCGTTCTCTTATTGAGCAAAAACGAACTGGGGTGTGCGTTTTTGCACGCAAGGATGAAGAAAAAAGGGGGAATAGTGTGGTAGAAATGGAAGAAATTGAGGATTTTGATGATGACTATGACGACGACGACGATGATTTTCTAGGGGATGAGGAAGAGGTTGACGGAGACGACGACGACGATGATGAGGTGATTATTCCATTAAGAAATATGAAGAAATGGTTAGAAAACAAGCCGCGTGGGTTTGGAGTAGATAAAGAGTATGATACTTCAGTTGAAGATAAGCTGATGGAAGANNATTG-ACAGAGTAGAAAAGCTCAGCTTGCTAATATCAATAAGCTCAAAAACAATCCAGTTAAAGCAAATACCAAACAAGTTCAGCAGGATAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCAGGATGGACTCTGTGTGCGCTTGGGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439255" ref_strand="+" ref_description="SGN-E439255 [cSTA-11-B9]">
      <seq>gaaatatgaagaaatggttagaaaacaagcctcgtgggtttggagtagataaagagtatgatacttcagttgaagataagctgatggaagaaattgagcagagtagaaaagctcagcttgctaatatcaataagctcaagaacaatccagttaaagcaaataccaaacaagttcagcaggataaaggatggactctgtgtgcgcttggtcaatcttcctaagaaaatgaacattgataaggatctacgagtggctttgaaaggagttccaggaatagtcaacatagttccagttgtgactgggaacaagaagaccaggaatcctgtttgcaaaggcctggcctatattaacttcaagtctaaggatgaagcacaaagatttgtgcaaatgttttctggacgaagtataagttttggtaaggttcagaagcaaataaagtgtgagatgataaatcccggatcaccaaagtccacaactatagagtccgttgataaaattaagtatgtccctgaacaagatctgcacggagaccaggatgatgattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="15673" stop="17596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15973" g_stop="16158" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16159" i_stop="16822" i_length="664">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.859" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16823" g_stop="17013" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="377" r_length="191" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17014" i_stop="17116" i_length="103">
            <donor d_prob="0.564" d_score="0.92"/>
            <acceptor a_prob="0.451" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17117" g_stop="17258" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="519" r_length="142" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E439255" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15973" e_stop="16158"/>
          <exon e_start="16823" e_stop="17013"/>
          <exon e_start="17117" e_stop="17258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATATGAAGAAATGGTTAGAAAACAAGCCGCGTGGGTTTGGAGTAGATAAAGAGTATGATACTTCAGTTGAAGATAAGCTGATGGAAGAAATTGAACAGAGTAGAAAAGCTCAGCTTGCTAATATCAATAAGCTCAAAAACAATCCAGTTAAAGCAAATACCAAACAAGTTCAGCAGGATAAAGGTAACTTCTTTTTGTATATTTGGGTCTTAGATTATATCATCTATGAATGCAACTGAATTGATAGGAAACAATGAACAAGTTTATGTATTTTGTTCTTAGTTAGTTACCCTTGACAATGACTCCTTTATCACCTTAAGGACTTAATAGGAGCTGAGCTGAGCATTTGTTCTACTATGATGTTCGGGTCAGCTTGTGCACAACTCGATTAATTTCAATGGATACTTGCTAGTTGCTACCTCTAACCAAGATATATTTTTTTGTTAGCTTTTGGATGCAATCTGGTGATTGCACATGGTGTAGATCAGTAGATGTAATGCTACACACAAAATAGAGGGATTCCACAACCTGTAATTATGTCTTTAATTGTTCATTCTTAATTCGAACCATCATTTAAAAAGGACTAATATCAGGGCTGAAATTTGGTGTATCGCAACCCAAGTCAGACGTTTGAGCTTGATGTTGGAACTAAAATTACGAATGTTATGGAATCAAACAACTTTAACTAGTTAAGTGATCGGGAGTATTACTTGTAGATGTTTAGTGTAGAGCAAATAAGTTTGGAGGATAAAGTAGAGACCTTAAGGAGCTCCAATGACTTCTGCATCCTCTACTCTTTTAATAAGCAGTATTTCACTTACGTTCTACAATTTCTAAAGTTGTTCAGGATGGACTCTGTGTGCGCTTGGTCAATCTTCCTAAGAAAATGAACGTTGATAAGGATCTACGAGTAGCTTTCAAAGGAGTTTCAGGAATAGTCAACATAGTTCCAGTCGTGACTGGGAACAAGAAGACCAGGAATCCTGTTTGTAAAGGCATGGCCTATATTAACTTTAAGTCCAAGGATGAAGCACAAAGGTAACGTTCATGGCTATACGTAAGAAATAAATGGGTGACGAGGTGCTTATGTAATCTTTACCTTTGCATTCATCCCTAAACTATAGAATGTTTGTTATTGTAGATTTGTGCAAATGTTTTCTGGACGAAGTATAAGTTTTGGTAAAGTTCAGAAGCAAATAAAGTGTGAGATGATAAATCCGGGATCACCTAAGTCCACAACTACACAGTCAGTTCATAAAATTAAGCATGTCCCTGAAAAAGAT</genome_strand>
        <mrna_strand>GAAATATGAAGAAATGGTTAGAAAACAAGCCTCGTGGGTTTGGAGTAGATAAAGAGTATGATACTTCAGTTGAAGATAAGCTGATGGAAGAAATTGAGCAGAGTAGAAAAGCTCAGCTTGCTAATATCAATAAGCTCAAGAACAATCCAGTTAAAGCAAATACCAAACAAGTTCAGCAGGATAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGACTCTGTGTGCGCTTGGTCAATCTTCCTAAGAAAATGAACATTGATAAGGATCTACGAGTGGCTTTGAAAGGAGTTCCAGGAATAGTCAACATAGTTCCAGTTGTGACTGGGAACAAGAAGACCAGGAATCCTGTTTGCAAAGGCCTGGCCTATATTAACTTCAAGTCTAAGGATGAAGCACAAAG.......................................................................................................ATTTGTGCAAATGTTTTCTGGACGAAGTATAAGTTTTGGTAAGGTTCAGAAGCAAATAAAGTGTGAGATGATAAATCCCGGATCACCAAAGTCCACAACTATAGAGTCCGTTGATAAAATTAAGTATGTCCCTGAACAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473798" ref_strand="+" ref_description="SGN-E473798 [cSTB-33-H2]">
      <seq>caaataccaaacaagttcagcaggataaagttgttcaggatggactctgtgtgcgcttggtcaatcttcctaagaaaatgaacattgataaggatctacgagtggctttgaaaggagttccaggaatagtcaacatagttccagttgtgactgggaacaagaagaccaggaatcctgtttgcaaaggcctggcctatattaacttcaagtctaaggatgaagcacaaagatttgtgcaaatgttttctggacgaagtataagttttggtaaggttcagaagcaaataaagtgtgagatgataaatcccggatcaccaaagtccacaactacagagtccgttgataaaattaagtatgtccctgaacaagatctgcacggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="15829" stop="17566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16129" g_stop="16158" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16159" i_stop="16814" i_length="656">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16815" g_stop="17013" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="229" r_length="199" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17014" i_stop="17116" i_length="103">
            <donor d_prob="0.564" d_score="0.92"/>
            <acceptor a_prob="0.451" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17117" g_stop="17258" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="371" r_length="142" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E473798" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16129" e_stop="16158"/>
          <exon e_start="16815" e_stop="17013"/>
          <exon e_start="17117" e_stop="17258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATACCAAACAAGTTCAGCAGGATAAAGGTAACTTCTTTTTGTATATTTGGGTCTTAGATTATATCATCTATGAATGCAACTGAATTGATAGGAAACAATGAACAAGTTTATGTATTTTGTTCTTAGTTAGTTACCCTTGACAATGACTCCTTTATCACCTTAAGGACTTAATAGGAGCTGAGCTGAGCATTTGTTCTACTATGATGTTCGGGTCAGCTTGTGCACAACTCGATTAATTTCAATGGATACTTGCTAGTTGCTACCTCTAACCAAGATATATTTTTTTGTTAGCTTTTGGATGCAATCTGGTGATTGCACATGGTGTAGATCAGTAGATGTAATGCTACACACAAAATAGAGGGATTCCACAACCTGTAATTATGTCTTTAATTGTTCATTCTTAATTCGAACCATCATTTAAAAAGGACTAATATCAGGGCTGAAATTTGGTGTATCGCAACCCAAGTCAGACGTTTGAGCTTGATGTTGGAACTAAAATTACGAATGTTATGGAATCAAACAACTTTAACTAGTTAAGTGATCGGGAGTATTACTTGTAGATGTTTAGTGTAGAGCAAATAAGTTTGGAGGATAAAGTAGAGACCTTAAGGAGCTCCAATGACTTCTGCATCCTCTACTCTTTTAATAAGCAGTATTTCACTTACGTTCTACAATTTCTAAAGTTGTTCAGGATGGACTCTGTGTGCGCTTGGTCAATCTTCCTAAGAAAATGAACGTTGATAAGGATCTACGAGTAGCTTTCAAAGGAGTTTCAGGAATAGTCAACATAGTTCCAGTCGTGACTGGGAACAAGAAGACCAGGAATCCTGTTTGTAAAGGCATGGCCTATATTAACTTTAAGTCCAAGGATGAAGCACAAAGGTAACGTTCATGGCTATACGTAAGAAATAAATGGGTGACGAGGTGCTTATGTAATCTTTACCTTTGCATTCATCCCTAAACTATAGAATGTTTGTTATTGTAGATTTGTGCAAATGTTTTCTGGACGAAGTATAAGTTTTGGTAAAGTTCAGAAGCAAATAAAGTGTGAGATGATAAATCCGGGATCACCTAAGTCCACAACTACACAGTCAGTTCATAAAATTAAGCATGTCCCTGAAAAAGAT</genome_strand>
        <mrna_strand>CAAATACCAAACAAGTTCAGCAGGATAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCAGGATGGACTCTGTGTGCGCTTGGTCAATCTTCCTAAGAAAATGAACATTGATAAGGATCTACGAGTGGCTTTGAAAGGAGTTCCAGGAATAGTCAACATAGTTCCAGTTGTGACTGGGAACAAGAAGACCAGGAATCCTGTTTGCAAAGGCCTGGCCTATATTAACTTCAAGTCTAAGGATGAAGCACAAAG.......................................................................................................ATTTGTGCAAATGTTTTCTGGACGAAGTATAAGTTTTGGTAAGGTTCAGAAGCAAATAAAGTGTGAGATGATAAATCCCGGATCACCAAAGTCCACAACTACAGAGTCCGTTGATAAAATTAAGTATGTCCCTGAACAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618714" ref_strand="+" ref_description="SGN-E618714 [69395]">
      <seq>tgggcaactgataaaaaccgagaaaagagtgtcaaggtttcttttgcatcagctgggattgtgtttgttgtcattgcttatgttatgagtatgttgtttatccgtatcaagatcccagcttatcttcgctgaaagttttagcctttatctatgttttaataagcactatgttatttttaggatttctctgaatggatttagtttaaagagcttgacatatgacactgtttgtagaagaggagtaagtgaagttgtttcgggtatttgtggcttttggtagatgttggttattgaactgtatgcaatcttggatctcatgaatgcttagtagaaaattgttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="20787" stop="19845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20487" g_stop="20147" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="343" polyA_stop="352"/>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E618714" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20487" e_stop="20147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGAGCTTGACATATGACACTGTTTTGTAGAAGAGGAGTAAGTGAAGTTGTTTCGGGTATTTGTGCCTTTCGGTAGATGTTGGTTATTGAACTGTATGCAATCTTGGATCTCATGAATGCTTAGTAGAAAATTGTT</genome_strand>
        <mrna_strand>TGGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTCATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAGCCTTTATCTATGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGAGCTTGACATATGACACTG-TTTGTAGAAGAGGAGTAAGTGAAGTTGTTTCGGGTATTTGTGGCTTTTGGTAGATGTTGGTTATTGAACTGTATGCAATCTTGGATCTCATGAATGCTTAGTAGAAAATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724853" ref_strand="+" ref_description="SGN-E724853 [FC25BD07]">
      <seq>gggcgattggcggccaatcggccgaattcccatggggatccgatgacactcaagtgggctttttgtgtttcttcccataaattcattgacgcgaaaaataaaaacagcaaatctactccgtcgtgaaccaccgccggaaaatcaaaatgccacccaaatcggaaacccaaccggcatcatccaccgccaaaacccaattttccgatccgtctgatgactactccatcgacccaattttccacatcctccgtatcctcccattctccttcctccgccctccaaagctccgtctgaaaatcccatcggtgactcttccctccgccatgacagttttcagtcttatccttcttacctactttatggtcgtctctggcatcgtttatgacgtcattgttgaaccgccgggaattggatcaacccaagaccggttcaccggagctgttaaaccggtggtgtttcttccgggtcgagttaatggtcagtatattattgaaggactctcttctggattcatgtttgtactaggtggtattgggattgtgcttttggatttggcaactgataaaaaccgagaaaagagtgtcaaggtttcttttgcatcagctgggattgtgtttgttgttattgcttatgttatgagtatgttgtttatccgtatcaagatcccagcttatcttcgctgaaagttttaatctttatctttgttttaataagcactatgttatttttaggatttctctgaatggatttagtttaaagagcttgacatatgacactgttttgtagaagaggagtaagtgaagttgtttcgggtatttgtgcctttcggtagatgttggttattgaactgtatgcaatcttggatctcatgaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="21296" stop="19863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20991" g_stop="20163" g_length="829"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="876" r_length="829" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E724853" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20991" e_stop="20163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAAGTGGGCTTTTTGTGTTTCTTCCCATAAATTCATTGACGCGAAAAATAAAAACAGCAAATCTACTCCGTCGTGAACCACCGCCGGAAAATCAAAATGCCACCCAAATCGGAAACCCAACCGGCATCATCCACCGCCAAAACCCAATTTTCCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGAGCTTGACATATGACACTGTTTTGTAGAAGAGGAGTAAGTGAAGTTGTTTCGGGTATTTGTGCCTTTCGGTAGATGTTGGTTATTGAACTGTATGCAATCTTGGATCTCATGAATGC</genome_strand>
        <mrna_strand>ACTCAAGTGGGCTTTTTGTGTTTCTTCCCATAAATTCATTGACGCGAAAAATAAAAACAGCAAATCTACTCCGTCGTGAACCACCGCCGGAAAATCAAAATGCCACCCAAATCGGAAACCCAACCGGCATCATCCACCGCCAAAACCCAATTTTCCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGAGCTTGACATATGACACTGTTTTGTAGAAGAGGAGTAAGTGAAGTTGTTTCGGGTATTTGTGCCTTTCGGTAGATGTTGGTTATTGAACTGTATGCAATCTTGGATCTCATGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553148" ref_strand="+" ref_description="SGN-E553148 [cTSB-1-O2]">
      <seq>cttccctccgccatgacagttttcagtcttatccttcttacctactttatggtcgtctctggcatcgtttatgacgtcattgttgaaccgccgggaattggatcaacccaagaccggttcaccggagctgttaaaccggtggtgtttcttccgggtcgagttaatggtcagtatattattgaaggactctcttctggattcatgtttgtactaggtggtattgggattgtgcttttggatttggcaactgataaaaaccgagaaaagagtgtcaaggtttcttttgcatcagctgggattgtgtttgttgttattgcttatgttatgagtatgttgtttatccgtatcaagatcccagcttatcttcgctgaaagttttaatctttatctttgttttaataagcactatgttatttttaggatttctctgaatggatttagtttaaagagcttgacatatgacactgttttgtagaagaggagtaagtgaagttgtttcgggtatttgtgcctttcggtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="21027" stop="19906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20727" g_stop="20211" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="520" polyA_stop="532"/>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E553148" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20727" e_stop="20211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGAGCTTGACATATGACACTGTTTTGTAGAAGAGGAGTAAGTGAAGTTGTTTCGGGTATTTGTGCCTTTCG</genome_strand>
        <mrna_strand>CTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGAGCTTGACATATGACACTGTTTTGTAGAAGAGGAGTAAGTGAAGTTGTTTCGGGTATTTGTGCCTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342271" ref_strand="+" ref_description="SGN-E342271 [cTOF-8-A12]">
      <seq>gaaaatcaaaatgccacccaaatcggaaacccaaccggcatcatccaccgccaaaacccaattttccgatccgtctgatgactactccatcgacccaattttccacatcctccgtatcctcccattctccttcctccgccctccaaagctccgtctgaaaatcccatcggtgactcttccctccgccatgacagttttcagtcttatccttcttacctactttatggtcgtctctggcatcgtttatgacgtcattgttgaaccgccgggaattggatcaacccaagaccggttcaccggagctgttaaaccggtggtgtttcttccgggtcgagttaatggtcagtatattattgaaggactctcttctggattcatgtttgtactaggtggtattgggattgtgcttttggatttggcaactgataaaaaccgagaaaagagtgtcaaggtttcttttgcatcagctgggattgtgtttgttgttattgcttatgttatgagtatgttgtttatccgtatcaagatcccagcttatcttcgctgaaagttttaatctttatctttgttttaataagcactatgttatttttaggatttctctgaatggatttagtttaaagagcttgacatatgacactgttttgtagaagaggagtaagtgaagttgtttcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="21202" stop="19926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20902" g_stop="20226" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E342271" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20902" e_stop="20226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCAAAATGCCACCCAAATCGGAAACCCAACCGGCATCATCCACCGCCAAAACCCAATTTTCCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGAGCTTGACATATGACACTGTTTTGTAGAAGAGGAGTAAGTGAAGTTGTTTCGGG</genome_strand>
        <mrna_strand>GAAAATCAAAATGCCACCCAAATCGGAAACCCAACCGGCATCATCCACCGCCAAAACCCAATTTTCCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGAGCTTGACATATGACACTGTTTTGTAGAAGAGGAGTAAGTGAAGTTGTTTCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591774" ref_strand="+" ref_description="SGN-E591774 [45493]">
      <seq>gtccatcttttagcccagggccaccgcgaaccaccgccggaaaatcaagaatgccacccaaatccgaaacccaactggcatcatccaccgccaaaacccaattttccgatccgtctgatgactactccatcgacccaattttccacatcctccgtgttctcccattctccttcctccgccctccaaagctccgtctgaaaatcccaacggtgactcttccctctgccatgacagttttcagccttatccttcttacctatttcatggtcgtctctggcatcgtttatgacgtcattgttgaacctccgggaattggatcaacccaagaccggttcaccggagctgttaaaccagtggtgtttcttccgggtcgagttaatggtcagtatattattgaaggactctcttctggattcatgtttgtactaggtggtattgggattgtgcttttggatttggcaactgataaaaaccgagaaaagagtgtcaaggtttcttttgcatcagctgggattgtgtttgttgtcattgcttatgttatgagtatgttgtttatccgtatcaagatcccagcttatcttcgctgaaagttttaacctttatctatgttttaataagcacaatgttatttttaggatttctctgaatggatttagtttaaagagcttgacatatgacactgtttgtagaagaggagtaagtgaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="21221" stop="19933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20914" g_stop="20233" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="709" r_length="682" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E591774" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20914" e_stop="20233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCACCGCCGGAAAATCAA-AATGCCACCCAAATCGGAAACCCAACCGGCATCATCCACCGCCAAAACCCAATTTTCCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGAGCTTGACATATGACACTGTTTTGTAGAAGAGGAGTAAGTGAAGTTG</genome_strand>
        <mrna_strand>GAACCACCGCCGGAAAATCAAGAATGCCACCCAAATCCGAAACCCAACTGGCATCATCCACCGCCAAAACCCAATTTTCCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTGTTCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCAACGGTGACTCTTCCCTCTGCCATGACAGTTTTCAGCCTTATCCTTCTTACCTATTTCATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCTCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCAGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTCATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAACCTTTATCTATGTTTTAATAAGCACAATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGAGCTTGACATATGACACTG-TTTGTAGAAGAGGAGTAAGTGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595374" ref_strand="+" ref_description="SGN-E595374 [38646]">
      <seq>gtccatcttttatgcccagggccaccgcgaaccaccgccggaaacatcaagaatgccacccaaatccgaaacccaactgtgcatcatccaccgcctaaaacccaattttccgataccgtactgatgactactccatcgacccaattttccatatcctccagtgttctcccattctccttcctccgccctccaagagtctccgttctgaaaatcccaactgtgacttcttccctctgccatgacagttttcagccttatccttcttaccgtatttcatggtcgtctctggcatcgtttatgacgtcattgttgaacctccgggaattggatcaacccaagaccggttcaccggagctgttaaaccaagtggtgtttcttccgggtcgagttaatggtcagtatattattgaaggactctcttctggattcatgtttgtactaggtggtattgggattgtgcttttggatttggcaactgataaaaaccgagaaaagagtgtcaaggtttcttttgcatcagctgggattgtgtttgttgtcattgcttatgttatgagtatgttgtctatccgtatcaagatcccagcttatcttcgctgaaagttttagcctttatctatgttttaataagcactatgtcatttccaggatttctctgaatggatttagtttaaagagcttgacataaagacacttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="21221" stop="19969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20914" g_stop="20257" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="700" r_length="672" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E595374" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E595374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20914" e_stop="20257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCACCGCCGGAAA-ATCAA-AATGCCACCCAAATCGGAAACCCAACCG-GCATCATCCACCGCC-AAAACCCAATTTTCCGAT-CCGT-CTGATGACTACTCCATCGACCCAATTTTCCACATCCTCC-GTATCCTCCCATTCTCCTTCCTCCGCCCTCCAA-AG-CTCCG-TCTGAAAATCCCATCGGTGAC-TCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACC-TACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACC-GGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGAGCTTGACAT-ATGACACTGTTTT</genome_strand>
        <mrna_strand>GAACCACCGCCGGAAACATCAAGAATGCCACCCAAATCCGAAACCCAACTGTGCATCATCCACCGCCTAAAACCCAATTTTCCGATACCGTACTGATGACTACTCCATCGACCCAATTTTCCATATCCTCCAGTGTTCTCCCATTCTCCTTCCTCCGCCCTCCAAGAGTCTCCGTTCTGAAAATCCCAACTGTGACTTCTTCCCTCTGCCATGACAGTTTTCAGCCTTATCCTTCTTACCGTATTTCATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCTCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCAAGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTCATTGCTTATGTTATGAGTATGTTGTCTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAGCCTTTATCTATGTTTTAATAAGCACTATGTCATTTCCAGGATTTCTCTGAATGGATTTAGTTTAAAGAGCTTGACATAAAGACACTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356373" ref_strand="+" ref_description="SGN-E356373 [cTOS-20-F21]">
      <seq>ccgatccgtctgatgactactccatcgacccaattttccacatcctccgtatcctcccattctccttcctccgccctccaaagctccgtctgaaaatcccatcggtgactcttccctccgccatgacagttttcagtcttatccttcttacctactttatggtcgtctctggcatcgtttatgacgtcattgttgaaccgccgggaattggatcaacccaagaccggttcaccggagctgttaaaccggtggtgtttcttccgggtcgagttaatggtcagtatattattgaaggactctcttctggattcatgtttgtactaggtggtattgggattgtgcttttggatttggcaactgataaaaaccgagaaaagagtgtcaaggtttcttttgcatcagctgggattgtgtttgttgttattgcttatgttatgagtatgttgtttatccgtatcaagatcccagcttatcttcgctgaaagttttaatctttatctttgttttaataagcactatgttatttttaggatttctctgaatggatttagtttaaagagcttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="21137" stop="19964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20837" g_stop="20263" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E356373" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20837" e_stop="20263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGAGCTTGACATATGACAC</genome_strand>
        <mrna_strand>CCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGAGCTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612428" ref_strand="+" ref_description="SGN-E612428 [62190]">
      <seq>atctactcgtccatcttttagcccaggccaccgggaaccaccgccggaaaatcaagaatgccacccaaatccgaaacccaaccggcatcatccactgccaaaacccaattttccgatccgtctgatgactactccatcgacccaatttttcacatcctccgtgttctcccattctccttcctccgtcctccaaagctccgtctgaaaatcccaacggtgactcttccctctgccatgacagttttcagccttatccttcttacctacttcatggtcgtctctggcatcgtttatgacgtcattgttgaaccgccgggaattggatcaacccaagaccggttcaccggagctgttaaaccagtggtttttcttccgggtcgagttaatggtcagtatattattgaaggactctcttctggattcatgtttgtactaggtggtattgggattgtgcttttggatttggcaactgataaaaaccgagaaaagagtgtcaaggtttcttttgcatcagctgggattgtgtttgttgtcattgcttatgttatgagtatgttgtttatccgtatcaagatcccagcttatcttcgctgaaagttttagcctttatctttgttttaactaagaactatgttattttagggatttctctgaaatggatttagtttaaaagagcttgacatatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="21226" stop="19964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20914" g_stop="20264" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="689" r_length="655" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E612428" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20914" e_stop="20264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCACCGCCGGAAAATCAA-AATGCCACCCAAATCGGAAACCCAACCGGCATCATCCACCGCCAAAACCCAATTTTCCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAA-TAAGCACTATGTTATTTTTAGGATTTCTCTG-AATGGATTTAGTTT-AAAGAGCTTGACATATGACA</genome_strand>
        <mrna_strand>GAACCACCGCCGGAAAATCAAGAATGCCACCCAAATCCGAAACCCAACCGGCATCATCCACTGCCAAAACCCAATTTTCCGATCCGTCTGATGACTACTCCATCGACCCAATTTTTCACATCCTCCGTGTTCTCCCATTCTCCTTCCTCCGTCCTCCAAAGCTCCGTCTGAAAATCCCAACGGTGACTCTTCCCTCTGCCATGACAGTTTTCAGCCTTATCCTTCTTACCTACTTCATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCAGTGGTTTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTCATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAGCCTTTATCTTTGTTTTAACTAAGAACTATGTTATTTTAGGGATTTCTCTGAAATGGATTTAGTTTAAAAGAGCTTGACATATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350482" ref_strand="+" ref_description="SGN-E350482 [cTOS-5-E5]">
      <seq>ccgatccgtctgatgactactccatcgacccaattttccacatcctccgtatcctcccattctccttcctccgccctccaaagctccgtctgaaaatcccatcggtgactcttccctccgccatgacagttttcagtcttatccttcttacctactttatggtcgtctctggcatcgtttatgacgtcattgttgaaccgccgggaattggatcaacccaagaccggttcaccggagctgttaaaccggtggtgtttcttccgggtcgagttaatggtcagtatattattgaaggactctcttctggattcatgtttgtactaggtggtattgggattgtgcttttggatttggcaactgataaaaaccgagaaaagagtgtcaaggtttcttttgcatcagctgggattgtgtttgttgttattgcttatgttatgagtatgttgtttatccgtatcaagatcccagcttatcttcgctgaaagttttaatctttatctttgttttaataagcactatgttatttttaggatttctctgaatggatttagtttaaagagcttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="21137" stop="19964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20837" g_stop="20264" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E350482" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20837" e_stop="20264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGAGCTTGACATATGACA</genome_strand>
        <mrna_strand>CCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGAGCTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350764" ref_strand="+" ref_description="SGN-E350764 [cTOS-7-P1]">
      <seq>ccgatccgtctgatgactactccatcgacccaattttccacatcctccgtatcctcccattctccttcctccgccctccaaagctccgtctgaaaatcccatcggtgactcttccctccgccatgacagttttcagtcttatccttcttacctactttatggtcgtctctggcatcgtttatgacgtcattgttgaaccgccgggaattggatcaacccaagaccggttcaccggagctgttaaaccggtggtgtttcttccgggtcgagttaatggtcagtatattattgaaggactctcttctggattcatgtttgtactaggtggtattgggattgtgcttttggatttggcaactgataaaaaccgagaaaagagtgtcaaggtttcttttgcatcagctgggattgtgtttgttgttattgcttatgttatgagtatgttgtttatccgtatcaagatcccagcttatcttcgctgaaagttttaatctttatctttgttttaataagcactatgttatttttaggatttctctgaatggatttagtttaaagagcttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="21137" stop="19964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20837" g_stop="20264" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E350764" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20837" e_stop="20264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGAGCTTGACATATGACA</genome_strand>
        <mrna_strand>CCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGAGCTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351335" ref_strand="+" ref_description="SGN-E351335 [cTOS-12-G17]">
      <seq>ccgatccgtctgatgactactccatcgacccaattttccacatcctccgtatcctcccattctccttcctccgccctccaaagctccgtctgaaaatcccatcggtgactcttccctccgccatgacagttttcagtcttatccttcttacctactttatggtcgtctctggcatcgtttatgacgtcattgttgaaccgccgggaattggatcaacccaagaccggttcaccggagctgttaaaccggtggtgtttcttccgggtcgagttaatggtcagtatattattgaaggactctcttctggattcatgtttgtactaggtggtattgggattgtgcttttggatttggcaactgataaaaaccgagaaaagagtgtcaaggtttcttttgcatcagctgggattgtgtttgttgttattgcttatgttatgagtatgttgtttatccgtatcaagatcccagcttatcttcgctgaaagttttaatctttatctttgttttaataagcactatgttatttttaggatttctctgaatggatttagtttaaagagcttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="21137" stop="19964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20837" g_stop="20264" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E351335" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20837" e_stop="20264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGAGCTTGACATATGACA</genome_strand>
        <mrna_strand>CCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGAGCTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353162" ref_strand="+" ref_description="SGN-E353162 [cTOS-14-M21]">
      <seq>ccgatccgtctgatgactactccatcgacccaattttccacatcctccgtatcctcccattctccttcctccgccctccaaagctccgtctgaaaatcccatcggtgactcttccctccgccatgacagttttcagtcttatccttcttacctactttatggtcgtctctggcatcgtttatgacgtcattgttgaaccgccgggaattggatcaacccaagaccggttcaccggagctgttaaaccggtggtgtttcttccgggtcgagttaatggtcagtatattattgaaggactctcttctggattcatgtttgtactaggtggtattgggattgtgcttttggatttggcaactgataaaaaccgagaaaagagtgtcaaggtttcttttgcatcagctgggattgtgtttgttgttattgcttatgttatgagtatgttgtttatccgtatcaagatcccagcttatcttcgctgaaagttttaatctttatctttgttttaataagcactatgttatttttaggatttctctgaatggattttagtttaaagagcttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="21137" stop="19969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20837" g_stop="20265" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E353162" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20837" e_stop="20265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGA-TTTAGTTTAAAGAGCTTGACATATGAC</genome_strand>
        <mrna_strand>CCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTTAGTTTAAAGAGCTTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718014" ref_strand="+" ref_description="SGN-E718014 [FC03BF05]">
      <seq>tcttcccataaattcattgacgcgaaaaataaaaacagcaaatctactccgtcgtgaaccaccgccggaaaatcaaaatgccacccaaatcggaaacccaaccggcatcatccaccgccaaaacccaattttccgatccgtctgatgactactccatcgacccaattttccacatcctccgtatcctcccattctccttcctccgccctccaaagctccgtctgaaaatcccatcggtgactcttccctccgccatgacagttttcagtcttatccttcttacctactttatggtcgtctctggcatcgtttatgacgtcattgttgaaccgccgggaattggatcaacccaagaccggttcaccggagctgttaaaccggtggtgtttcttccgtgtcgagttaatggtcagtatattattgaaggactctcttctggattcatgtttgtactaggtggtattgggattgtgcttttggatttggcaactgataaaaaccgagaaaagagtgtcaaggtttcttttgcatcagctgggattgtgtttgttgttattgcttatgttatgagtatgttgtttatccgtatcaagatcccagcttatcttcgctgaaagttttaatctttatctttgttttaataagcactatgttatttttaggatttctctgaatggatttagtttaaagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="21269" stop="19978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20969" g_stop="20277" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E718014" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20969" e_stop="20277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCCATAAATTCATTGACGCGAAAAATAAAAACAGCAAATCTACTCCGTCGTGAACCACCGCCGGAAAATCAAAATGCCACCCAAATCGGAAACCCAACCGGCATCATCCACCGCCAAAACCCAATTTTCCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGAGC</genome_strand>
        <mrna_strand>TCTTCCCATAAATTCATTGACGCGAAAAATAAAAACAGCAAATCTACTCCGTCGTGAACCACCGCCGGAAAATCAAAATGCCACCCAAATCGGAAACCCAACCGGCATCATCCACCGCCAAAACCCAATTTTCCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGTGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718477" ref_strand="+" ref_description="SGN-E718477 [FC04DB07]">
      <seq>aatcggccgaattgtgtttcttcccataaattcattgacgcgaaaaataaaaacagcaaatctactccgtcgtgaaccaccgccggaaaatcaaaatgccacccaaatcggaaacccaaccggcatcatccaccgccaaaacccaattttccgatccgtctgatgactactccatcgacccaattttccacatcctccgtatcctcccattctccttcctccgccctccaaagctccgtctgaaaatcccatcggtgactcttccctccgccatgacagttttcagtcttatccttcttacctactttatggtcgtctctggcatcgtttatgacgtcattgttgaaccgccgggaattggatcaacccaagaccggttcaccggagctgttaaaccggtggtgtttcttccgtgtcgagttaatggtcagtatattattgaaggactctcttctggattcatgtttgtactaggtggtattgggattgtgcttttggatttggcaactgataaaaaccgagaaaagagtgtcaaggtttcttttgcatcaactgggattgtgtttgttgttattgcttatgttatgagtatgttgtttatccgtatcaagatcccagcttatcttcgctgaaagttttaatctttatctttgttttaataagcactatgttatttttaggatttctctgaatggatttagtttaaagagaaatttccattgaggatgtcaaacgggaagttaaaattttgcgcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="21276" stop="19978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20987" g_stop="20279" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E718477" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20987" e_stop="20279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGGGCTTTTTGTGTTTCTTCCCATAAATTCATTGACGCGAAAAATAAAAACAGCAAATCTACTCCGTCGTGAACCACCGCCGGAAAATCAAAATGCCACCCAAATCGGAAACCCAACCGGCATCATCCACCGCCAAAACCCAATTTTCCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGA</genome_strand>
        <mrna_strand>AATCGGCCGAATTGTGTTTCTTCCCATAAATTCATTGACGCGAAAAATAAAAACAGCAAATCTACTCCGTCGTGAACCACCGCCGGAAAATCAAAATGCCACCCAAATCGGAAACCCAACCGGCATCATCCACCGCCAAAACCCAATTTTCCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGTGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAACTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555530" ref_strand="+" ref_description="SGN-E555530 [cTSC-4-O2]">
      <seq>cttccctccgccatgacagttttcagtcttatccttcttacctactttatggtcgtctctggcatcgtatatgacgtcattgttgaaccgccgggaattggatcaacccaagaccggttcaccggagctgttaaaccggtggtgtttcttccgggtcgagttaatggtcagtatattattgaaggactctcttctggattcatgtttgtactaggtggtattgggattgtgcttttggatttggcaactgataaaaaccgagaaaagagtgtcaaggtttcttttgcatcagctgggattgtgtttgttgttattgcttatgttatgagtatgttgtttatccgtatcaagatcccagcttatcttcgctgaaagttttaatctttatctttgttttaataagcactatgttatttttaggatttctctgaaagggatttagtttaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="21027" stop="19980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20727" g_stop="20280" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E555530" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20727" e_stop="20280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTG-AATGGATTTAGTTTAAAG</genome_strand>
        <mrna_strand>CTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTATATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAAAGGGATTTAGTTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714187" ref_strand="+" ref_description="SGN-E714187 [FB10DA09]">
      <seq>taaaaacagcaaatctactccgtcgtgaaccaccgccggaaaatcaaaatgccacccaaatcggaaacccaaccggcatcatccaccgccaaaacccaattttccgatccgtctgatgactactccatcgacccaattttccacatcctccgtatcctcccattctccttcctccgccctccaaagctccgtctgaaaatcccatcggtgactcttccctccgccatgacagttttcagtcttatccttcttacctactttatggtcgtctctggcatcgtttatgacgtcattgttgaaccgccgggaattggatcaacccaagaccggttcaccggagctgttaaaccggtggtgtttcttccgggtcgagttaatggtcagtatattattgaaggactctcttctggattcatgtttgtactaggtggtattgggattgtgcttttggatttggcaactgataaaaaccgagaaaagagtgtcaaggtttcttttgcatcagctgggattgtgtttgttgttattgcttatgttatgagtatgttgtttatccgtatcaagatcccagcttatcttcgctgaaagttttaatctttatctttgttttaataagcactatgttatttttaaaaaaanaaaaaaaaaaaaaaaaaaaaaaancccccggggggggcccgggaaccaatttcccccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="21240" stop="20009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20940" g_stop="20309" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="648" polyA_stop="663"/>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E714187" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20940" e_stop="20309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACAGCAAATCTACTCCGTCGTGAACCACCGCCGGAAAATCAAAATGCCACCCAAATCGGAAACCCAACCGGCATCATCCACCGCCAAAACCCAATTTTCCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTA</genome_strand>
        <mrna_strand>TAAAAACAGCAAATCTACTCCGTCGTGAACCACCGCCGGAAAATCAAAATGCCACCCAAATCGGAAACCCAACCGGCATCATCCACCGCCAAAACCCAATTTTCCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260997" ref_strand="+" ref_description="SGN-E260997 [cLEG-55-I3]">
      <seq>aaaaacagcaaatctactccgtcgtgaaccaccgccggaaaatcaaaatgccacccaaatcggaaacccaaccggcatcatccaccgccaaaacccaattttccgatccgtctgatgactactccatcgacccaattttccacatcctccgtatcctcccattctccttcctccgccctccaaagctccgtctgaaaatcccatcggtgactcttccctccgccatgacagttttcagtcttatccttcttacctactttatggtcgtctctggcatcgtttatgacgtcattgttgaaccgccgggaattggatcaacccaagaccggttcaccggagctgttaaaccggtggtgtttcttccgggtcgagttaatggtcagtatattattgaaggactctcttctggattcatgtttgtactacgtggtattgggattgtgcttttggatttggcaactgataaaaaccgagaaaagagtgtcaaggtttcttttgcatcagctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="21239" stop="20131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20939" g_stop="20431" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E260997" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20939" e_stop="20431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAGCAAATCTACTCCGTCGTGAACCACCGCCGGAAAATCAAAATGCCACCCAAATCGGAAACCCAACCGGCATCATCCACCGCCAAAACCCAATTTTCCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGG</genome_strand>
        <mrna_strand>AAAAACAGCAAATCTACTCCGTCGTGAACCACCGCCGGAAAATCAAAATGCCACCCAAATCGGAAACCCAACCGGCATCATCCACCGCCAAAACCCAATTTTCCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTACGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327475" ref_strand="+" ref_description="SGN-E327475 [cTOC-19-P21]">
      <seq>aaaggctaataccgtactaccactactgctgaaaagttacacctacccacccccacccaccccactaccccacgtcaccccactaccccatctcatcaacccccatctcacccatactctatacaccctcccacccactccactaccccacccacccacccccatctctcactcttacactctctccatgcgttcttgttcatgcttcaaggtcctactcaagaacagaagttggtgaatctgagtgaagtcctgtggaatgaacagcttgtttcatgcatgttcaactgcaatattaacaaggactagccatcttgttgtgaagagttcaatctgtggatttccatctctttcatggaagacaagctttggtcatgctagaattgggaaagttgattccaacttgtatttgaatagagtttctgttcgttgcttttcgtccaaaaaacatagtggagatagttctccatcgcagaattctgagttcactacagaaatgaaagaagagagagatggtttctttgttgttaggaaaggagatctggttggagtctacaaaaacttgagtgattgccagacccaagtcggatcatcgatatgtgatcctcctgtgagtgtgtacaaaggctatgccatgcctaaggacacagaagaaatatctctttcttgtgggcttaaaaatgctctctattctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="22689" stop="26291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22989" g_stop="23216" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23217" i_stop="24484" i_length="1268">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24485" g_stop="24851" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="595" r_length="367" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24852" i_stop="25889" i_length="1038">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25890" g_stop="25991" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="697" r_length="102" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E327475" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22989" e_stop="23216"/>
          <exon e_start="24485" e_stop="24851"/>
          <exon e_start="25890" e_stop="25991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGCTAATACCGTACTACCACTACTGCTGAAAAGTTACACCTACCCACCCCCACCCACCCCACTACCCCACGTCACCCCACTACCCCATCTCATCAACCCCCATCTCACCCATACTCTATACACCCTCCCACCCACTCCACTACCCCACCCACCCACCCCCATCTCTCACTCTTACACTCTCTCCATGCGTTCTTGTTCATGCTTCAAGGTCCTACTCAAGAACAGGTCAGTCTCATCTGGTAATTGAGGGGTATGTATGTTTTCTCTGTTTGTTAAAATCTTCGATTTGATGACTCCCACCCCAAATTAGGGTTCAAAATTCTTTAAAAATCTATTCTTTTTCGATTTTCTGAATACCCTTTACAGTTTTGCTCATAAAGTTTGCATTTTTATGGAGTTTGGAAGTTCTATGTGCAACCCCTTTTCAGCTTGGTCTTGTATTGTTAATATAATGTGGACACATGAAAGACTTTTGCTTTTTCCAAAGCATATTGACTCAAAGTTTGGATTTTTATGGCTGTAGGGAGGAAAATCCTTCATGATATTCTTGTAAATTCAACCTTTAAGCTGTCTATTGTATGTGTTGATAAAAGAAAATGGAATGTTGTTTTCTTTTTTCTTTTAATGATGCAGAAGGGGAAAAATAACTTGTTTCCTATTTAGTTTTATTGTTATTTGAATTTGGACTGTAAAATAAATAAGCAATTTAGTTCTTATAATCAATCAATGTAATTAAAAAAAAAAATCTTATAATCAATCAGTCAACTTGGTTGAGTTCAGAGTATAGTGTGCACAATTGTATTTATTTTAGTTACACAGATTTCGCTCAGTGATGTTGCGGCTATAGAAGTGAAAGAAAGTAAAGAGTGGATGAAGAATAAGTTTCTTTGGTCTGAAGGTTTTAGGGAAATCACTCACACATAATATGTCTTTTAATAAGCGAACGTTAGATCTTTTTTTGTTTATACTTTGTAGTTTTGGAACTTTTGGATTTTCTTCGAGTTACCTTTACAGATCTTTTCTTCTGTTGATTTCCTTGATATTTCTTTGGAATTGCAGCTTCTAATCTTGGAACTGTTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAAGAATCCTCCCTAATTTGCCTGTAAATAAAATTTAACTCTGGTTTGCTATTCTGTATTTTCTGCTAATGTCATCAAGTAGATGAAAAGTTAAGTCATTTTAAAGAAGCTTCTTTTTTCTTTCAACAAACAAAAGATGCAGAAAATGAGCATTAAAAAGTTCTTATAAAGTATAAGTCTGATCTTAATGGAGTTTATTTTAGAATTGCGCAAATGATTAATTGTACGCTTTTTCAGTTGGTCATGTTGTGCATGTAGAAGTGGAGGAGAGGAAATTAGATGGAGTATACGTTTATTTTCTTCTCTTCAAATGGATTTTATTATATATATCAGTTGAATGAGCAAATATACAATTTTCCTTTTTTCCTTTTTGTTTTCCAGAAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCGGTAACTACTGTTATTTCAGCCATTTATTGATCTGTTGTTTGTAGATGACTTTTATTCCCAGGAAAGACATAAAGACAAATACGACTCATCAGAAATTATCCATACATTATGTACAAAATTTACTTTTTCATATTCTTGATGATTAATCATAGGTAGATTCAGCCAAAAAGTCAAAACCTTGTGTAGTAATAACATTACCTTATTTTTTACTCTCTCCGTCCAGTTTACTTGTCCAACATTGACTTGGCACACCCTTAAGGAGCAATAACTAAAATGACAAATTTTACTATATCAACCTTTGAAATAATAAACTTAATTTTTTGGGAAATACACTCTGAAATGATTATAGTTAATAATAAGGGTAAATTAGGAACTTAGTGAGAACTTACCTCTTGGTTTTCCGAACTGCACAAGTAAAAGTGGACATTTATTATTAGTATAGTAGACTAGTAAAAGTGTAAAAAGGGAGTAACTGCAATTTCAGATAAGCTCATTGAGTGACTGACAATTGTTAAGGAATGCTCTAATTGAAATCGGAGGATAGTTTAAGTAATTATGTCTTCTATAGGTTATTCTTTTGCCTCGTTGTATTTGTAAAACAATATCTGTGAATACGAGGATAAAAGAAAGAGGTAAATTGAGTTAATTGTTTACCTTTCCATTAGAAAGTATTTTCCCAAAGTTCTCTGTTCATTTCCAGCAACCATGCCTTCTCCATAATGTTAGGATTTCTCTGTCACTTCATCTGCCTATTGCCAAAACTTGAGAACATGTAGTATGGATAGATAGGTCTTCTGCTGTAATTGGACGATGCTTGTGAGATGACTTCCCAGTGGATTCTTTGACTTCTTGCACATATTATAAGGGGTCAAATCTTGTGAAGCTTTTGTTCATCCTTGGCGCTGCAGGCTTATTTTAGTGAAATCTAGTTATAACAAATAAAATATAAATAAAAAAGGAAGATGTTATCACAATGAAGTTTCCAGACTTGCAATTGATATAATGAGTTGTTTTCTCTTCCTCTTCTGTTTCTGGCAGATATGTGATCCTCCTGTGAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAG-AATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATC</genome_strand>
        <mrna_strand>AAAGGCTAATACCGTACTACCACTACTGCTGAAAAGTTACACCTACCCACCCCCACCCACCCCACTACCCCACGTCACCCCACTACCCCATCTCATCAACCCCCATCTCACCCATACTCTATACACCCTCCCACCCACTCCACTACCCCACCCACCCACCCCCATCTCTCACTCTTACACTCTCTCCATGCGTTCTTGTTCATGCTTCAAGGTCCTACTCAAGAACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGATCCTCCTGTGAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAAATATC-TCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406767" ref_strand="+" ref_description="SGN-E406767 [PPI-4-N2]">
      <seq>cacccacccacccacccacccccatctctcactcttacactctctccatgcgttcttgttcatgcttcaaggtcctactcaagaacaggtcagtctcatctggtaattgagggcttctaatcttggaactgttcaatctcttcggagctgagtctgattatgtctggaggaatcctccctaatttgcctaagttggtgaatctgactgaggtcctgtggaatgaacagcttgtttcatgcatgttcaactgcaatattaacaaggactagccatcttgttgtgaagagttcaatctgtggatttccatctctttcatggaagacaagcgttggtcatgctagaattagaaaagttgattccaacttgtatttgaatagagtttctgtttgttgctattcgtcccaaaaacatagtggagatagttctccatcgcagaattctgattccactccagaaatgaaagaagagagagatggtttctttgttgttaggaaaggagatctggttggagtctacaaaaacttgagtgattgccagacccaagttggatcatcgatatgtgatcctcctgttagtgtgtacaaaggctatgccatgcctaaggacacagaagaatatcttctttcttgtgggcttaaaaatgctctctattctatcagagctgcagatcttacccgagatctctttgggactctagtaccatgcccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="22829" stop="26344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23129" g_stop="23241" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23242" i_stop="24050" i_length="809">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24051" g_stop="24126" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="189" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24127" i_stop="24484" i_length="358">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24485" g_stop="24851" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="556" r_length="367" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24852" i_stop="25889" i_length="1038">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25890" g_stop="26044" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="711" r_length="155" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E406767" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23129" e_stop="23241"/>
          <exon e_start="24051" e_stop="24126"/>
          <exon e_start="24485" e_stop="24851"/>
          <exon e_start="25890" e_stop="26044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTACCCCACCCACCCACCCCCATCTCTCACTCTTACACTCTCTCCATGCGTTCTTGTTCATGCTTCAAGGTCCTACTCAAGAACAGGTCAGTCTCATCTGGTAATTGAGGGGTATGTATGTTTTCTCTGTTTGTTAAAATCTTCGATTTGATGACTCCCACCCCAAATTAGGGTTCAAAATTCTTTAAAAATCTATTCTTTTTCGATTTTCTGAATACCCTTTACAGTTTTGCTCATAAAGTTTGCATTTTTATGGAGTTTGGAAGTTCTATGTGCAACCCCTTTTCAGCTTGGTCTTGTATTGTTAATATAATGTGGACACATGAAAGACTTTTGCTTTTTCCAAAGCATATTGACTCAAAGTTTGGATTTTTATGGCTGTAGGGAGGAAAATCCTTCATGATATTCTTGTAAATTCAACCTTTAAGCTGTCTATTGTATGTGTTGATAAAAGAAAATGGAATGTTGTTTTCTTTTTTCTTTTAATGATGCAGAAGGGGAAAAATAACTTGTTTCCTATTTAGTTTTATTGTTATTTGAATTTGGACTGTAAAATAAATAAGCAATTTAGTTCTTATAATCAATCAATGTAATTAAAAAAAAAAATCTTATAATCAATCAGTCAACTTGGTTGAGTTCAGAGTATAGTGTGCACAATTGTATTTATTTTAGTTACACAGATTTCGCTCAGTGATGTTGCGGCTATAGAAGTGAAAGAAAGTAAAGAGTGGATGAAGAATAAGTTTCTTTGGTCTGAAGGTTTTAGGGAAATCACTCACACATAATATGTCTTTTAATAAGCGAACGTTAGATCTTTTTTTGTTTATACTTTGTAGTTTTGGAACTTTTGGATTTTCTTCGAGTTACCTTTACAGATCTTTTCTTCTGTTGATTTCCTTGATATTTCTTTGGAATTGCAGCTTCTAATCTTGGAACTGTTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAAGAATCCTCCCTAATTTGCCTGTAAATAAAATTTAACTCTGGTTTGCTATTCTGTATTTTCTGCTAATGTCATCAAGTAGATGAAAAGTTAAGTCATTTTAAAGAAGCTTCTTTTTTCTTTCAACAAACAAAAGATGCAGAAAATGAGCATTAAAAAGTTCTTATAAAGTATAAGTCTGATCTTAATGGAGTTTATTTTAGAATTGCGCAAATGATTAATTGTACGCTTTTTCAGTTGGTCATGTTGTGCATGTAGAAGTGGAGGAGAGGAAATTAGATGGAGTATACGTTTATTTTCTTCTCTTCAAATGGATTTTATTATATATATCAGTTGAATGAGCAAATATACAATTTTCCTTTTTTCCTTTTTGTTTTCCAGAAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCGGTAACTACTGTTATTTCAGCCATTTATTGATCTGTTGTTTGTAGATGACTTTTATTCCCAGGAAAGACATAAAGACAAATACGACTCATCAGAAATTATCCATACATTATGTACAAAATTTACTTTTTCATATTCTTGATGATTAATCATAGGTAGATTCAGCCAAAAAGTCAAAACCTTGTGTAGTAATAACATTACCTTATTTTTTACTCTCTCCGTCCAGTTTACTTGTCCAACATTGACTTGGCACACCCTTAAGGAGCAATAACTAAAATGACAAATTTTACTATATCAACCTTTGAAATAATAAACTTAATTTTTTGGGAAATACACTCTGAAATGATTATAGTTAATAATAAGGGTAAATTAGGAACTTAGTGAGAACTTACCTCTTGGTTTTCCGAACTGCACAAGTAAAAGTGGACATTTATTATTAGTATAGTAGACTAGTAAAAGTGTAAAAAGGGAGTAACTGCAATTTCAGATAAGCTCATTGAGTGACTGACAATTGTTAAGGAATGCTCTAATTGAAATCGGAGGATAGTTTAAGTAATTATGTCTTCTATAGGTTATTCTTTTGCCTCGTTGTATTTGTAAAACAATATCTGTGAATACGAGGATAAAAGAAAGAGGTAAATTGAGTTAATTGTTTACCTTTCCATTAGAAAGTATTTTCCCAAAGTTCTCTGTTCATTTCCAGCAACCATGCCTTCTCCATAATGTTAGGATTTCTCTGTCACTTCATCTGCCTATTGCCAAAACTTGAGAACATGTAGTATGGATAGATAGGTCTTCTGCTGTAATTGGACGATGCTTGTGAGATGACTTCCCAGTGGATTCTTTGACTTCTTGCACATATTATAAGGGGTCAAATCTTGTGAAGCTTTTGTTCATCCTTGGCGCTGCAGGCTTATTTTAGTGAAATCTAGTTATAACAAATAAAATATAAATAAAAAAGGAAGATGTTATCACAATGAAGTTTCCAGACTTGCAATTGATATAATGAGTTGTTTTCTCTTCCTCTTCTGTTTCTGGCAGATATGTGATCCTCCTGTGAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTACCGAAGATCTCTTTGGGACTCTAGTACCATGCCCTTT</genome_strand>
        <mrna_strand>CACCCACCCACCCACCCACCCCCATCTCTCACTCTTACACTCTCTCCATGCGTTCTTGTTCATGCTTCAAGGTCCTACTCAAGAACAGGTCAGTCTCATCTGGTAATTGAGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTAATCTTGGAACTGTTCAATCTCTTCGGAGCTGAGTCTGATTATGTCTGGAGGAATCCTCCCTAATTTGCCT......................................................................................................................................................................................................................................................................................................................................................................AAGTTGGTGAATCTGACTGAGGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCGTTGGTCATGCTAGAATTAGAAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTTGTTGCTATTCGTCCCAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGATTCCACTCCAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTTGGATCATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGATCCTCCTGTTAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTACCCGAGATCTCTTTGGGACTCTAGTACCATGCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420797" ref_strand="+" ref_description="SGN-E420797 [STM-31-D12]">
      <seq>cacccacccacccacccacccccatctctcactcttacactctctccatgcgttcttgttcatgcttcaaggtcctactcaagaacaggtcagtctcatctggtaattgagggcttctaatcttggaactgttcaatctcttcggagctgagtctgattatgtctggaggaatcctccctaatttgcctaagttggtgaatctgactgaggtcctgtggaatgaacagcttgtttcatgcatgttcaactgcaatattaacaaggactagccatcttgttgtgaagagttcaatctgtggatttccatctctttcatggaagacaagcgttggtcatgctagaattagaaaagttgattccaacttgtatttgaatagagtttctgtttgttgctattcgtcccaaaaacatagtggagatagttctccatcgcagaattctgattccactccagaaatgaaagaagagagagatggtttctttgttgttaggaaaggagatctggttggagtctacaaaaacttgagtgattgccagacccaagttggatcatcgatatgtgatcctcctgttagtgtgtacaaaggctatgccatgcctaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="22829" stop="26239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23129" g_stop="23241" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23242" i_stop="24050" i_length="809">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24051" g_stop="24126" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="189" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24127" i_stop="24484" i_length="358">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24485" g_stop="24851" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="556" r_length="367" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24852" i_stop="25889" i_length="1038">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25890" g_stop="25939" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="606" r_length="50" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E420797" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23129" e_stop="23241"/>
          <exon e_start="24051" e_stop="24126"/>
          <exon e_start="24485" e_stop="24851"/>
          <exon e_start="25890" e_stop="25939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTACCCCACCCACCCACCCCCATCTCTCACTCTTACACTCTCTCCATGCGTTCTTGTTCATGCTTCAAGGTCCTACTCAAGAACAGGTCAGTCTCATCTGGTAATTGAGGGGTATGTATGTTTTCTCTGTTTGTTAAAATCTTCGATTTGATGACTCCCACCCCAAATTAGGGTTCAAAATTCTTTAAAAATCTATTCTTTTTCGATTTTCTGAATACCCTTTACAGTTTTGCTCATAAAGTTTGCATTTTTATGGAGTTTGGAAGTTCTATGTGCAACCCCTTTTCAGCTTGGTCTTGTATTGTTAATATAATGTGGACACATGAAAGACTTTTGCTTTTTCCAAAGCATATTGACTCAAAGTTTGGATTTTTATGGCTGTAGGGAGGAAAATCCTTCATGATATTCTTGTAAATTCAACCTTTAAGCTGTCTATTGTATGTGTTGATAAAAGAAAATGGAATGTTGTTTTCTTTTTTCTTTTAATGATGCAGAAGGGGAAAAATAACTTGTTTCCTATTTAGTTTTATTGTTATTTGAATTTGGACTGTAAAATAAATAAGCAATTTAGTTCTTATAATCAATCAATGTAATTAAAAAAAAAAATCTTATAATCAATCAGTCAACTTGGTTGAGTTCAGAGTATAGTGTGCACAATTGTATTTATTTTAGTTACACAGATTTCGCTCAGTGATGTTGCGGCTATAGAAGTGAAAGAAAGTAAAGAGTGGATGAAGAATAAGTTTCTTTGGTCTGAAGGTTTTAGGGAAATCACTCACACATAATATGTCTTTTAATAAGCGAACGTTAGATCTTTTTTTGTTTATACTTTGTAGTTTTGGAACTTTTGGATTTTCTTCGAGTTACCTTTACAGATCTTTTCTTCTGTTGATTTCCTTGATATTTCTTTGGAATTGCAGCTTCTAATCTTGGAACTGTTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAAGAATCCTCCCTAATTTGCCTGTAAATAAAATTTAACTCTGGTTTGCTATTCTGTATTTTCTGCTAATGTCATCAAGTAGATGAAAAGTTAAGTCATTTTAAAGAAGCTTCTTTTTTCTTTCAACAAACAAAAGATGCAGAAAATGAGCATTAAAAAGTTCTTATAAAGTATAAGTCTGATCTTAATGGAGTTTATTTTAGAATTGCGCAAATGATTAATTGTACGCTTTTTCAGTTGGTCATGTTGTGCATGTAGAAGTGGAGGAGAGGAAATTAGATGGAGTATACGTTTATTTTCTTCTCTTCAAATGGATTTTATTATATATATCAGTTGAATGAGCAAATATACAATTTTCCTTTTTTCCTTTTTGTTTTCCAGAAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCGGTAACTACTGTTATTTCAGCCATTTATTGATCTGTTGTTTGTAGATGACTTTTATTCCCAGGAAAGACATAAAGACAAATACGACTCATCAGAAATTATCCATACATTATGTACAAAATTTACTTTTTCATATTCTTGATGATTAATCATAGGTAGATTCAGCCAAAAAGTCAAAACCTTGTGTAGTAATAACATTACCTTATTTTTTACTCTCTCCGTCCAGTTTACTTGTCCAACATTGACTTGGCACACCCTTAAGGAGCAATAACTAAAATGACAAATTTTACTATATCAACCTTTGAAATAATAAACTTAATTTTTTGGGAAATACACTCTGAAATGATTATAGTTAATAATAAGGGTAAATTAGGAACTTAGTGAGAACTTACCTCTTGGTTTTCCGAACTGCACAAGTAAAAGTGGACATTTATTATTAGTATAGTAGACTAGTAAAAGTGTAAAAAGGGAGTAACTGCAATTTCAGATAAGCTCATTGAGTGACTGACAATTGTTAAGGAATGCTCTAATTGAAATCGGAGGATAGTTTAAGTAATTATGTCTTCTATAGGTTATTCTTTTGCCTCGTTGTATTTGTAAAACAATATCTGTGAATACGAGGATAAAAGAAAGAGGTAAATTGAGTTAATTGTTTACCTTTCCATTAGAAAGTATTTTCCCAAAGTTCTCTGTTCATTTCCAGCAACCATGCCTTCTCCATAATGTTAGGATTTCTCTGTCACTTCATCTGCCTATTGCCAAAACTTGAGAACATGTAGTATGGATAGATAGGTCTTCTGCTGTAATTGGACGATGCTTGTGAGATGACTTCCCAGTGGATTCTTTGACTTCTTGCACATATTATAAGGGGTCAAATCTTGTGAAGCTTTTGTTCATCCTTGGCGCTGCAGGCTTATTTTAGTGAAATCTAGTTATAACAAATAAAATATAAATAAAAAAGGAAGATGTTATCACAATGAAGTTTCCAGACTTGCAATTGATATAATGAGTTGTTTTCTCTTCCTCTTCTGTTTCTGGCAGATATGTGATCCTCCTGTGAGTGTGTACAAAGGCTATGCCATGCCTAAGGA</genome_strand>
        <mrna_strand>CACCCACCCACCCACCCACCCCCATCTCTCACTCTTACACTCTCTCCATGCGTTCTTGTTCATGCTTCAAGGTCCTACTCAAGAACAGGTCAGTCTCATCTGGTAATTGAGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTAATCTTGGAACTGTTCAATCTCTTCGGAGCTGAGTCTGATTATGTCTGGAGGAATCCTCCCTAATTTGCCT......................................................................................................................................................................................................................................................................................................................................................................AAGTTGGTGAATCTGACTGAGGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCGTTGGTCATGCTAGAATTAGAAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTTGTTGCTATTCGTCCCAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGATTCCACTCCAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTTGGATCATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGATCCTCCTGTTAGTGTGTACAAAGGCTATGCCATGCCTAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722323" ref_strand="+" ref_description="SGN-E722323 [FC16DG02]">
      <seq>acccacccccatctccctttaatacactctctccatgcgttcttgttcatgcttcacggtcctactcaagaacaggtcagtctcatctggtaattgagggcttctaatcttggaactgttcaatctcttcgcagctgagtctgattatgtctggaagaatcctccctaatttgcctaagttggtgaatctgagtgaagtcctgtggaatgaacagcttgtttcatgcatgttcaactgcaatattaacaaggactagccatcttgttgtgaagagttcaatctgtggatttccatctctttcatggaagacaagctttggtcatgctagaattgggaaagttgattccaacttgtatttgaatagagtttctgttcgttgcttttcgtccaaaaaacatagtggagatagttctccatcgcagaattctgagttcactacagaaatgaaagaagagagagatggtttctttgttgttaggaaaggagatctggttggagtctacaaaaacttgagtgattgccagacccaagtcggatcatcgatatgtgatcctcctgtgagtgtgtacaaaggctatgccatgcctaaggacacagaagaatatcttctttcttgtgggcttaaaaatgctctctattctatcagagctgcagatcttaccgaagatctctttgggactctagtaccatgcccttttcagcaaccttcttcttcaaaaagtggaacatctgatcatttgccaaagaagaggccacaggaagcaatgtggtcagaatatgcggatgctgttggatcaacagttgtttcaaatgattccgcaagaaagcatgtcaagttagagcaacaaaagggcgaccaaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="22842" stop="28024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23142" g_stop="23241" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23242" i_stop="24050" i_length="809">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24051" g_stop="24126" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="176" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24127" i_stop="24484" i_length="358">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24485" g_stop="24851" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="543" r_length="367" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24852" i_stop="25889" i_length="1038">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25890" g_stop="26048" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="702" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26049" i_stop="27241" i_length="1193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27242" g_stop="27322" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="783" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27323" i_stop="27641" i_length="319">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27642" g_stop="27724" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="866" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E722323" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23142" e_stop="23241"/>
          <exon e_start="24051" e_stop="24126"/>
          <exon e_start="24485" e_stop="24851"/>
          <exon e_start="25890" e_stop="26048"/>
          <exon e_start="27242" e_stop="27322"/>
          <exon e_start="27642" e_stop="27724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCACCCCCATCTCTCACTCTTACACTCTCTCCATGCGTTCTTGTTCATGCTTCAAGGTCCTACTCAAGAACAGGTCAGTCTCATCTGGTAATTGAGGGGTATGTATGTTTTCTCTGTTTGTTAAAATCTTCGATTTGATGACTCCCACCCCAAATTAGGGTTCAAAATTCTTTAAAAATCTATTCTTTTTCGATTTTCTGAATACCCTTTACAGTTTTGCTCATAAAGTTTGCATTTTTATGGAGTTTGGAAGTTCTATGTGCAACCCCTTTTCAGCTTGGTCTTGTATTGTTAATATAATGTGGACACATGAAAGACTTTTGCTTTTTCCAAAGCATATTGACTCAAAGTTTGGATTTTTATGGCTGTAGGGAGGAAAATCCTTCATGATATTCTTGTAAATTCAACCTTTAAGCTGTCTATTGTATGTGTTGATAAAAGAAAATGGAATGTTGTTTTCTTTTTTCTTTTAATGATGCAGAAGGGGAAAAATAACTTGTTTCCTATTTAGTTTTATTGTTATTTGAATTTGGACTGTAAAATAAATAAGCAATTTAGTTCTTATAATCAATCAATGTAATTAAAAAAAAAAATCTTATAATCAATCAGTCAACTTGGTTGAGTTCAGAGTATAGTGTGCACAATTGTATTTATTTTAGTTACACAGATTTCGCTCAGTGATGTTGCGGCTATAGAAGTGAAAGAAAGTAAAGAGTGGATGAAGAATAAGTTTCTTTGGTCTGAAGGTTTTAGGGAAATCACTCACACATAATATGTCTTTTAATAAGCGAACGTTAGATCTTTTTTTGTTTATACTTTGTAGTTTTGGAACTTTTGGATTTTCTTCGAGTTACCTTTACAGATCTTTTCTTCTGTTGATTTCCTTGATATTTCTTTGGAATTGCAGCTTCTAATCTTGGAACTGTTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAAGAATCCTCCCTAATTTGCCTGTAAATAAAATTTAACTCTGGTTTGCTATTCTGTATTTTCTGCTAATGTCATCAAGTAGATGAAAAGTTAAGTCATTTTAAAGAAGCTTCTTTTTTCTTTCAACAAACAAAAGATGCAGAAAATGAGCATTAAAAAGTTCTTATAAAGTATAAGTCTGATCTTAATGGAGTTTATTTTAGAATTGCGCAAATGATTAATTGTACGCTTTTTCAGTTGGTCATGTTGTGCATGTAGAAGTGGAGGAGAGGAAATTAGATGGAGTATACGTTTATTTTCTTCTCTTCAAATGGATTTTATTATATATATCAGTTGAATGAGCAAATATACAATTTTCCTTTTTTCCTTTTTGTTTTCCAGAAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCGGTAACTACTGTTATTTCAGCCATTTATTGATCTGTTGTTTGTAGATGACTTTTATTCCCAGGAAAGACATAAAGACAAATACGACTCATCAGAAATTATCCATACATTATGTACAAAATTTACTTTTTCATATTCTTGATGATTAATCATAGGTAGATTCAGCCAAAAAGTCAAAACCTTGTGTAGTAATAACATTACCTTATTTTTTACTCTCTCCGTCCAGTTTACTTGTCCAACATTGACTTGGCACACCCTTAAGGAGCAATAACTAAAATGACAAATTTTACTATATCAACCTTTGAAATAATAAACTTAATTTTTTGGGAAATACACTCTGAAATGATTATAGTTAATAATAAGGGTAAATTAGGAACTTAGTGAGAACTTACCTCTTGGTTTTCCGAACTGCACAAGTAAAAGTGGACATTTATTATTAGTATAGTAGACTAGTAAAAGTGTAAAAAGGGAGTAACTGCAATTTCAGATAAGCTCATTGAGTGACTGACAATTGTTAAGGAATGCTCTAATTGAAATCGGAGGATAGTTTAAGTAATTATGTCTTCTATAGGTTATTCTTTTGCCTCGTTGTATTTGTAAAACAATATCTGTGAATACGAGGATAAAAGAAAGAGGTAAATTGAGTTAATTGTTTACCTTTCCATTAGAAAGTATTTTCCCAAAGTTCTCTGTTCATTTCCAGCAACCATGCCTTCTCCATAATGTTAGGATTTCTCTGTCACTTCATCTGCCTATTGCCAAAACTTGAGAACATGTAGTATGGATAGATAGGTCTTCTGCTGTAATTGGACGATGCTTGTGAGATGACTTCCCAGTGGATTCTTTGACTTCTTGCACATATTATAAGGGGTCAAATCTTGTGAAGCTTTTGTTCATCCTTGGCGCTGCAGGCTTATTTTAGTGAAATCTAGTTATAACAAATAAAATATAAATAAAAAAGGAAGATGTTATCACAATGAAGTTTCCAGACTTGCAATTGATATAATGAGTTGTTTTCTCTTCCTCTTCTGTTTCTGGCAGATATGTGATCCTCCTGTGAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTACCGAAGATCTCTTTGGGACTCTAGTACCATGCCCTTTTCAGGTATAGCTCCTGAGCAGTTCTCTTGGATAAAATTTGTTCCTTTTTCTCAAAGGTGAATATTTGATTTCAAAACTTGTTGTCTATGAGGTTTCATATATGATTTCCTGTCTCTGAGAAGAAGAGGCTTTGAGGCTCCATCATTAGAATGTAATATTTTGCAACTTAATATCAGTTTATATTTTATATTAACCTCAAAGGAATCCCATGGTACTGTTAAAAACAACGACCTAAAGAAAAACTGTAATTGTCATGTTTCCACAGCTGTTCTCCAGAAACAAAACCATGAGGTGCCTGGCTGAATTTGTGTCTTTTTTCTAGAGAGTCTGATCCTGCTTTGGTAAACTTCTTTTGATAAACCGAGGGTCTATCAGAAACAACCTCTCTACCCCATAAAGGTAGGGGTAAGGTCTGCTTTTACATCCTACCCTCCCCAGACCCCATTTGTTGGATTTCATTGGGTATGGTTGTTGTTGACTAGAGAGTCTGAAAACTTTACCTGTTAAATGTCAGAGTTTTCATAATCCAACCACTATGACTCGATTGAAAGAAGTTTTTTCAACTTTAAAACTTGGCTGTACCTTAAAGGTATATCATAGGAATGAAAAACTTCCTGACACACCTATTCTTTAAATAAAGAAAGTTAAAGATTTTAGTACAACACCCTGACCATTTTAATAATGGTACAAGGGAAAACTGCGAGAGCTTCTTAATCATCATGCATGGTATACACACTTCTTTTTGTTTCTTCTATATTGTATATCAAGGATCATCTCTGAATGCTGATACAATATCAGTAGTTTTGTACTTTCTCATTTAATTTTCTACTGCGTATCTTCATGTTCACATTATAGTTAACTGAAAATCGACTAAGGGGGTGTTTGGATTGGCATTTTTAAGCACCTCCAAAAATAAGAGTTTAAAAGCCAAAAGCTTCTTAAAATAAGCCAATCCAAACACCCTCTACAACAATCATTGCCTGTCTTTCTTTGATTCTTCTCTCTGTTTGTCTCTCTGAAAGTTCTTTTGATTTTGCTCTCTCCATGCACTCTTTGCTTTATATGGAATTGCTGGTCAGTTGTATGCTCTGATAGTTATCATAAAGTTGCAGCACCCAGAAAATAATACATGTTTCTTCTTCCCTCATTTTCTTTTATAATTGGTCATACAGCTTATTAGTATTTTATATTTTGCAGCAACCTTCTTCTTCAAAAAGTGGAACATCTGATCATTTGCCAAAGAAGAGGCCACAGGAAGCAATGTGGTCAGAATATGCGGTACGATGGTTTTATATTGTTTTGCAATGGAAAAGTCTACCAGGGTTTGCAGCAATTTCTTTTGAAGTTATTTCCACTTTACTCTATAATCCAAGTTTAATTACTTCTCTAAATCATTTTCCAAGCAGGGTTTGGTTCCTAAGGAACTCAATGTACTTACTTATTATGCTTGCATGCACTTCAATTTATAGATTCCTTGATAGAATTCTCTGCGAGATGCCATAACTAATGGTTTCACGGTTATATTTTTTGCATGATAAATTGTGTTTGGCTCAACACTGTTATGGAAATTATTTTGTTTATTTGCTCCCCTTTGCAGGATGCTGTTGGATCAGCAGTTGTTTCAAATGATTCCGCAAGAAAGCATGTCAAGTTAGAGCAACAAAAGGGCGACCAAATTCT</genome_strand>
        <mrna_strand>ACCCACCCCCATCTCCCTTTAATACACTCTCTCCATGCGTTCTTGTTCATGCTTCACGGTCCTACTCAAGAACAGGTCAGTCTCATCTGGTAATTGAGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTAATCTTGGAACTGTTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAAGAATCCTCCCTAATTTGCCT......................................................................................................................................................................................................................................................................................................................................................................AAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGATCCTCCTGTGAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTACCGAAGATCTCTTTGGGACTCTAGTACCATGCCCTTTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTTCTTCTTCAAAAAGTGGAACATCTGATCATTTGCCAAAGAAGAGGCCACAGGAAGCAATGTGGTCAGAATATGCG...............................................................................................................................................................................................................................................................................................................................GATGCTGTTGGATCAACAGTTGTTTCAAATGATTCCGCAAGAAAGCATGTCAAGTTAGAGCAACAAAAGGGCGACCAAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326088" ref_strand="+" ref_description="SGN-E326088 [cTOC-16-H21]">
      <seq>catctctcactcttacactctctccatgcgttcttgttcatgcttcaaggtcctactcaagaacaggtcagtctcatctggtaattgagggttggtgaatctgagtgaagtcctgtggaatgaacagcttgtttcatgcatgttcaactgcaatattaacaaggactagccatcttgttgtgaagagttcaatctgtggatttccatctctttcatggaagacaagctttggtcatgctagaattgggaaagttgattccaacttgtatttgaatagagtttctgttcgttgcttttcgtccaaaaaacatagtggagatagttctccatcgcagaattctgagttcactacagaaatgaaagaagagagagatggtttctttgttgttaggaaaggagatctggttggagtctacaaaaacttgagtgattgccagacccaagtcggatcatcgatatgtgatcctcctgtgagtgtgtacaaaggctatgccatgcctaaggacacagaagaatatcttctttcttgtgggcttaaaaatgctctctattctatcagagctgcagatcttaccgaagatctctttgggactctagtaccatgcccttttcagcaaccttcttcttcaaaaagtggaacatctgatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="22851" stop="27578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23151" g_stop="23241" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23242" i_stop="24484" i_length="1243">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24485" g_stop="24851" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="455" r_length="364" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24852" i_stop="25889" i_length="1038">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25890" g_stop="26048" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="614" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26049" i_stop="27241" i_length="1193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27242" g_stop="27278" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="651" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E326088" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23151" e_stop="23241"/>
          <exon e_start="24485" e_stop="24851"/>
          <exon e_start="25890" e_stop="26048"/>
          <exon e_start="27242" e_stop="27278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCTCACTCTTACACTCTCTCCATGCGTTCTTGTTCATGCTTCAAGGTCCTACTCAAGAACAGGTCAGTCTCATCTGGTAATTGAGGGGTATGTATGTTTTCTCTGTTTGTTAAAATCTTCGATTTGATGACTCCCACCCCAAATTAGGGTTCAAAATTCTTTAAAAATCTATTCTTTTTCGATTTTCTGAATACCCTTTACAGTTTTGCTCATAAAGTTTGCATTTTTATGGAGTTTGGAAGTTCTATGTGCAACCCCTTTTCAGCTTGGTCTTGTATTGTTAATATAATGTGGACACATGAAAGACTTTTGCTTTTTCCAAAGCATATTGACTCAAAGTTTGGATTTTTATGGCTGTAGGGAGGAAAATCCTTCATGATATTCTTGTAAATTCAACCTTTAAGCTGTCTATTGTATGTGTTGATAAAAGAAAATGGAATGTTGTTTTCTTTTTTCTTTTAATGATGCAGAAGGGGAAAAATAACTTGTTTCCTATTTAGTTTTATTGTTATTTGAATTTGGACTGTAAAATAAATAAGCAATTTAGTTCTTATAATCAATCAATGTAATTAAAAAAAAAAATCTTATAATCAATCAGTCAACTTGGTTGAGTTCAGAGTATAGTGTGCACAATTGTATTTATTTTAGTTACACAGATTTCGCTCAGTGATGTTGCGGCTATAGAAGTGAAAGAAAGTAAAGAGTGGATGAAGAATAAGTTTCTTTGGTCTGAAGGTTTTAGGGAAATCACTCACACATAATATGTCTTTTAATAAGCGAACGTTAGATCTTTTTTTGTTTATACTTTGTAGTTTTGGAACTTTTGGATTTTCTTCGAGTTACCTTTACAGATCTTTTCTTCTGTTGATTTCCTTGATATTTCTTTGGAATTGCAGCTTCTAATCTTGGAACTGTTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAAGAATCCTCCCTAATTTGCCTGTAAATAAAATTTAACTCTGGTTTGCTATTCTGTATTTTCTGCTAATGTCATCAAGTAGATGAAAAGTTAAGTCATTTTAAAGAAGCTTCTTTTTTCTTTCAACAAACAAAAGATGCAGAAAATGAGCATTAAAAAGTTCTTATAAAGTATAAGTCTGATCTTAATGGAGTTTATTTTAGAATTGCGCAAATGATTAATTGTACGCTTTTTCAGTTGGTCATGTTGTGCATGTAGAAGTGGAGGAGAGGAAATTAGATGGAGTATACGTTTATTTTCTTCTCTTCAAATGGATTTTATTATATATATCAGTTGAATGAGCAAATATACAATTTTCCTTTTTTCCTTTTTGTTTTCCAGAAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCGGTAACTACTGTTATTTCAGCCATTTATTGATCTGTTGTTTGTAGATGACTTTTATTCCCAGGAAAGACATAAAGACAAATACGACTCATCAGAAATTATCCATACATTATGTACAAAATTTACTTTTTCATATTCTTGATGATTAATCATAGGTAGATTCAGCCAAAAAGTCAAAACCTTGTGTAGTAATAACATTACCTTATTTTTTACTCTCTCCGTCCAGTTTACTTGTCCAACATTGACTTGGCACACCCTTAAGGAGCAATAACTAAAATGACAAATTTTACTATATCAACCTTTGAAATAATAAACTTAATTTTTTGGGAAATACACTCTGAAATGATTATAGTTAATAATAAGGGTAAATTAGGAACTTAGTGAGAACTTACCTCTTGGTTTTCCGAACTGCACAAGTAAAAGTGGACATTTATTATTAGTATAGTAGACTAGTAAAAGTGTAAAAAGGGAGTAACTGCAATTTCAGATAAGCTCATTGAGTGACTGACAATTGTTAAGGAATGCTCTAATTGAAATCGGAGGATAGTTTAAGTAATTATGTCTTCTATAGGTTATTCTTTTGCCTCGTTGTATTTGTAAAACAATATCTGTGAATACGAGGATAAAAGAAAGAGGTAAATTGAGTTAATTGTTTACCTTTCCATTAGAAAGTATTTTCCCAAAGTTCTCTGTTCATTTCCAGCAACCATGCCTTCTCCATAATGTTAGGATTTCTCTGTCACTTCATCTGCCTATTGCCAAAACTTGAGAACATGTAGTATGGATAGATAGGTCTTCTGCTGTAATTGGACGATGCTTGTGAGATGACTTCCCAGTGGATTCTTTGACTTCTTGCACATATTATAAGGGGTCAAATCTTGTGAAGCTTTTGTTCATCCTTGGCGCTGCAGGCTTATTTTAGTGAAATCTAGTTATAACAAATAAAATATAAATAAAAAAGGAAGATGTTATCACAATGAAGTTTCCAGACTTGCAATTGATATAATGAGTTGTTTTCTCTTCCTCTTCTGTTTCTGGCAGATATGTGATCCTCCTGTGAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTACCGAAGATCTCTTTGGGACTCTAGTACCATGCCCTTTTCAGGTATAGCTCCTGAGCAGTTCTCTTGGATAAAATTTGTTCCTTTTTCTCAAAGGTGAATATTTGATTTCAAAACTTGTTGTCTATGAGGTTTCATATATGATTTCCTGTCTCTGAGAAGAAGAGGCTTTGAGGCTCCATCATTAGAATGTAATATTTTGCAACTTAATATCAGTTTATATTTTATATTAACCTCAAAGGAATCCCATGGTACTGTTAAAAACAACGACCTAAAGAAAAACTGTAATTGTCATGTTTCCACAGCTGTTCTCCAGAAACAAAACCATGAGGTGCCTGGCTGAATTTGTGTCTTTTTTCTAGAGAGTCTGATCCTGCTTTGGTAAACTTCTTTTGATAAACCGAGGGTCTATCAGAAACAACCTCTCTACCCCATAAAGGTAGGGGTAAGGTCTGCTTTTACATCCTACCCTCCCCAGACCCCATTTGTTGGATTTCATTGGGTATGGTTGTTGTTGACTAGAGAGTCTGAAAACTTTACCTGTTAAATGTCAGAGTTTTCATAATCCAACCACTATGACTCGATTGAAAGAAGTTTTTTCAACTTTAAAACTTGGCTGTACCTTAAAGGTATATCATAGGAATGAAAAACTTCCTGACACACCTATTCTTTAAATAAAGAAAGTTAAAGATTTTAGTACAACACCCTGACCATTTTAATAATGGTACAAGGGAAAACTGCGAGAGCTTCTTAATCATCATGCATGGTATACACACTTCTTTTTGTTTCTTCTATATTGTATATCAAGGATCATCTCTGAATGCTGATACAATATCAGTAGTTTTGTACTTTCTCATTTAATTTTCTACTGCGTATCTTCATGTTCACATTATAGTTAACTGAAAATCGACTAAGGGGGTGTTTGGATTGGCATTTTTAAGCACCTCCAAAAATAAGAGTTTAAAAGCCAAAAGCTTCTTAAAATAAGCCAATCCAAACACCCTCTACAACAATCATTGCCTGTCTTTCTTTGATTCTTCTCTCTGTTTGTCTCTCTGAAAGTTCTTTTGATTTTGCTCTCTCCATGCACTCTTTGCTTTATATGGAATTGCTGGTCAGTTGTATGCTCTGATAGTTATCATAAAGTTGCAGCACCCAGAAAATAATACATGTTTCTTCTTCCCTCATTTTCTTTTATAATTGGTCATACAGCTTATTAGTATTTTATATTTTGCAGCAACCTTCTTCTTCAAAAAGTGGAACATCTGATCATT</genome_strand>
        <mrna_strand>CATCTCTCACTCTTACACTCTCTCCATGCGTTCTTGTTCATGCTTCAAGGTCCTACTCAAGAACAGGTCAGTCTCATCTGGTAATTGAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................---TTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGATCCTCCTGTGAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTACCGAAGATCTCTTTGGGACTCTAGTACCATGCCCTTTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTTCTTCTTCAAAAAGTGGAACATCTGATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316375" ref_strand="+" ref_description="SGN-E316375 [cTOA-25-M6]">
      <seq>catctctcactcttacactctctccatgcgttcttgttcatgcttcaaggtcctactcaagaacagcttctaatcttggaactgttcaatctcttcgcagctgagtctgattatgtctggaagaatcctccctaatttgcctaagttggtgaatctgagtgaagtcctgtggaatgaacagcttgtttcatgcatggtcaactgcaatattaacaaggactaaccatcttggtgggaagagttcaatctgtggatttccatctctttcatggaagacaagctttggtcatgctagaattgggaaagttgattccaacttgtatttgaatagagattctgttcgttgcttttcgtccaaaaaacatagtggagatagttctccatcgcagaattctgagttcactacagaaatgaaagaatagagagatggtttctttgttgttaagaaaggagatctggttggagtctacaaaaacttgagtgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="22851" stop="25128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23151" g_stop="23216" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23217" i_stop="24050" i_length="834">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24051" g_stop="24126" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="142" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24127" i_stop="24484" i_length="358">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24485" g_stop="24828" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="486" r_length="344" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E316375" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23151" e_stop="23216"/>
          <exon e_start="24051" e_stop="24126"/>
          <exon e_start="24485" e_stop="24828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCTCACTCTTACACTCTCTCCATGCGTTCTTGTTCATGCTTCAAGGTCCTACTCAAGAACAGGTCAGTCTCATCTGGTAATTGAGGGGTATGTATGTTTTCTCTGTTTGTTAAAATCTTCGATTTGATGACTCCCACCCCAAATTAGGGTTCAAAATTCTTTAAAAATCTATTCTTTTTCGATTTTCTGAATACCCTTTACAGTTTTGCTCATAAAGTTTGCATTTTTATGGAGTTTGGAAGTTCTATGTGCAACCCCTTTTCAGCTTGGTCTTGTATTGTTAATATAATGTGGACACATGAAAGACTTTTGCTTTTTCCAAAGCATATTGACTCAAAGTTTGGATTTTTATGGCTGTAGGGAGGAAAATCCTTCATGATATTCTTGTAAATTCAACCTTTAAGCTGTCTATTGTATGTGTTGATAAAAGAAAATGGAATGTTGTTTTCTTTTTTCTTTTAATGATGCAGAAGGGGAAAAATAACTTGTTTCCTATTTAGTTTTATTGTTATTTGAATTTGGACTGTAAAATAAATAAGCAATTTAGTTCTTATAATCAATCAATGTAATTAAAAAAAAAAATCTTATAATCAATCAGTCAACTTGGTTGAGTTCAGAGTATAGTGTGCACAATTGTATTTATTTTAGTTACACAGATTTCGCTCAGTGATGTTGCGGCTATAGAAGTGAAAGAAAGTAAAGAGTGGATGAAGAATAAGTTTCTTTGGTCTGAAGGTTTTAGGGAAATCACTCACACATAATATGTCTTTTAATAAGCGAACGTTAGATCTTTTTTTGTTTATACTTTGTAGTTTTGGAACTTTTGGATTTTCTTCGAGTTACCTTTACAGATCTTTTCTTCTGTTGATTTCCTTGATATTTCTTTGGAATTGCAGCTTCTAATCTTGGAACTGTTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAAGAATCCTCCCTAATTTGCCTGTAAATAAAATTTAACTCTGGTTTGCTATTCTGTATTTTCTGCTAATGTCATCAAGTAGATGAAAAGTTAAGTCATTTTAAAGAAGCTTCTTTTTTCTTTCAACAAACAAAAGATGCAGAAAATGAGCATTAAAAAGTTCTTATAAAGTATAAGTCTGATCTTAATGGAGTTTATTTTAGAATTGCGCAAATGATTAATTGTACGCTTTTTCAGTTGGTCATGTTGTGCATGTAGAAGTGGAGGAGAGGAAATTAGATGGAGTATACGTTTATTTTCTTCTCTTCAAATGGATTTTATTATATATATCAGTTGAATGAGCAAATATACAATTTTCCTTTTTTCCTTTTTGTTTTCCAGAAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATT</genome_strand>
        <mrna_strand>CATCTCTCACTCTTACACTCTCTCCATGCGTTCTTGTTCATGCTTCAAGGTCCTACTCAAGAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTAATCTTGGAACTGTTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAAGAATCCTCCCTAATTTGCCT......................................................................................................................................................................................................................................................................................................................................................................AAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGGTCAACTGCAATATTAACAAGGACTAACCATCTTGGTGGGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGATTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAATAGAGAGATGGTTTCTTTGTTGTTAAGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710592" ref_strand="+" ref_description="SGN-E710592 [FA55DF02]">
      <seq>cctcactcttacactctctccatgcgttcttgttcatgcttcaaggtcctactcaagaacagcttctaatcttggaactgttcaatctcttcgcagctgagtctgattatgtctggaagaatcctccctaatttgcctaagttggtgaatctgagtgaagtcctgtggaatgaacagcttgtttcatgcatgttcaactgcaatattaacaaggactagccatcttgttgtgaagagttcaatctgtggatttccatctctttcatggaagacaagctttggtcatgctagaattgggaaagttgattccaacttgtatttgaatagagtttctgttcgttgcttttcgtccaaaaaacatagtggagatagttctccatcgcagaattctgagttcactacagaaatgaaagaagagagagatggtttctttgttgttaggaaaggagatctggttggagtctacaaaaacttgagtgattgccagacccaagtcggatcatcgatatgtgatcctcctgtgagtgtgtacaaaggctatgccatgcctaaggacacagaagaatatcttctttcttgtgggcttaaaaatgctctctattctatcagagctgcagatcttaccgaagatctctttgggactctagtaccatgcccttttcagcaaccttcttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="22856" stop="27555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23155" g_stop="23216" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23217" i_stop="24050" i_length="834">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24051" g_stop="24126" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="138" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24127" i_stop="24484" i_length="358">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24485" g_stop="24851" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="505" r_length="367" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24852" i_stop="25889" i_length="1038">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25890" g_stop="26048" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="664" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26049" i_stop="27241" i_length="1193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27242" g_stop="27255" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="678" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E710592" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23155" e_stop="23216"/>
          <exon e_start="24051" e_stop="24126"/>
          <exon e_start="24485" e_stop="24851"/>
          <exon e_start="25890" e_stop="26048"/>
          <exon e_start="27242" e_stop="27255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACTCTTACACTCTCTCCATGCGTTCTTGTTCATGCTTCAAGGTCCTACTCAAGAACAGGTCAGTCTCATCTGGTAATTGAGGGGTATGTATGTTTTCTCTGTTTGTTAAAATCTTCGATTTGATGACTCCCACCCCAAATTAGGGTTCAAAATTCTTTAAAAATCTATTCTTTTTCGATTTTCTGAATACCCTTTACAGTTTTGCTCATAAAGTTTGCATTTTTATGGAGTTTGGAAGTTCTATGTGCAACCCCTTTTCAGCTTGGTCTTGTATTGTTAATATAATGTGGACACATGAAAGACTTTTGCTTTTTCCAAAGCATATTGACTCAAAGTTTGGATTTTTATGGCTGTAGGGAGGAAAATCCTTCATGATATTCTTGTAAATTCAACCTTTAAGCTGTCTATTGTATGTGTTGATAAAAGAAAATGGAATGTTGTTTTCTTTTTTCTTTTAATGATGCAGAAGGGGAAAAATAACTTGTTTCCTATTTAGTTTTATTGTTATTTGAATTTGGACTGTAAAATAAATAAGCAATTTAGTTCTTATAATCAATCAATGTAATTAAAAAAAAAAATCTTATAATCAATCAGTCAACTTGGTTGAGTTCAGAGTATAGTGTGCACAATTGTATTTATTTTAGTTACACAGATTTCGCTCAGTGATGTTGCGGCTATAGAAGTGAAAGAAAGTAAAGAGTGGATGAAGAATAAGTTTCTTTGGTCTGAAGGTTTTAGGGAAATCACTCACACATAATATGTCTTTTAATAAGCGAACGTTAGATCTTTTTTTGTTTATACTTTGTAGTTTTGGAACTTTTGGATTTTCTTCGAGTTACCTTTACAGATCTTTTCTTCTGTTGATTTCCTTGATATTTCTTTGGAATTGCAGCTTCTAATCTTGGAACTGTTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAAGAATCCTCCCTAATTTGCCTGTAAATAAAATTTAACTCTGGTTTGCTATTCTGTATTTTCTGCTAATGTCATCAAGTAGATGAAAAGTTAAGTCATTTTAAAGAAGCTTCTTTTTTCTTTCAACAAACAAAAGATGCAGAAAATGAGCATTAAAAAGTTCTTATAAAGTATAAGTCTGATCTTAATGGAGTTTATTTTAGAATTGCGCAAATGATTAATTGTACGCTTTTTCAGTTGGTCATGTTGTGCATGTAGAAGTGGAGGAGAGGAAATTAGATGGAGTATACGTTTATTTTCTTCTCTTCAAATGGATTTTATTATATATATCAGTTGAATGAGCAAATATACAATTTTCCTTTTTTCCTTTTTGTTTTCCAGAAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCGGTAACTACTGTTATTTCAGCCATTTATTGATCTGTTGTTTGTAGATGACTTTTATTCCCAGGAAAGACATAAAGACAAATACGACTCATCAGAAATTATCCATACATTATGTACAAAATTTACTTTTTCATATTCTTGATGATTAATCATAGGTAGATTCAGCCAAAAAGTCAAAACCTTGTGTAGTAATAACATTACCTTATTTTTTACTCTCTCCGTCCAGTTTACTTGTCCAACATTGACTTGGCACACCCTTAAGGAGCAATAACTAAAATGACAAATTTTACTATATCAACCTTTGAAATAATAAACTTAATTTTTTGGGAAATACACTCTGAAATGATTATAGTTAATAATAAGGGTAAATTAGGAACTTAGTGAGAACTTACCTCTTGGTTTTCCGAACTGCACAAGTAAAAGTGGACATTTATTATTAGTATAGTAGACTAGTAAAAGTGTAAAAAGGGAGTAACTGCAATTTCAGATAAGCTCATTGAGTGACTGACAATTGTTAAGGAATGCTCTAATTGAAATCGGAGGATAGTTTAAGTAATTATGTCTTCTATAGGTTATTCTTTTGCCTCGTTGTATTTGTAAAACAATATCTGTGAATACGAGGATAAAAGAAAGAGGTAAATTGAGTTAATTGTTTACCTTTCCATTAGAAAGTATTTTCCCAAAGTTCTCTGTTCATTTCCAGCAACCATGCCTTCTCCATAATGTTAGGATTTCTCTGTCACTTCATCTGCCTATTGCCAAAACTTGAGAACATGTAGTATGGATAGATAGGTCTTCTGCTGTAATTGGACGATGCTTGTGAGATGACTTCCCAGTGGATTCTTTGACTTCTTGCACATATTATAAGGGGTCAAATCTTGTGAAGCTTTTGTTCATCCTTGGCGCTGCAGGCTTATTTTAGTGAAATCTAGTTATAACAAATAAAATATAAATAAAAAAGGAAGATGTTATCACAATGAAGTTTCCAGACTTGCAATTGATATAATGAGTTGTTTTCTCTTCCTCTTCTGTTTCTGGCAGATATGTGATCCTCCTGTGAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTACCGAAGATCTCTTTGGGACTCTAGTACCATGCCCTTTTCAGGTATAGCTCCTGAGCAGTTCTCTTGGATAAAATTTGTTCCTTTTTCTCAAAGGTGAATATTTGATTTCAAAACTTGTTGTCTATGAGGTTTCATATATGATTTCCTGTCTCTGAGAAGAAGAGGCTTTGAGGCTCCATCATTAGAATGTAATATTTTGCAACTTAATATCAGTTTATATTTTATATTAACCTCAAAGGAATCCCATGGTACTGTTAAAAACAACGACCTAAAGAAAAACTGTAATTGTCATGTTTCCACAGCTGTTCTCCAGAAACAAAACCATGAGGTGCCTGGCTGAATTTGTGTCTTTTTTCTAGAGAGTCTGATCCTGCTTTGGTAAACTTCTTTTGATAAACCGAGGGTCTATCAGAAACAACCTCTCTACCCCATAAAGGTAGGGGTAAGGTCTGCTTTTACATCCTACCCTCCCCAGACCCCATTTGTTGGATTTCATTGGGTATGGTTGTTGTTGACTAGAGAGTCTGAAAACTTTACCTGTTAAATGTCAGAGTTTTCATAATCCAACCACTATGACTCGATTGAAAGAAGTTTTTTCAACTTTAAAACTTGGCTGTACCTTAAAGGTATATCATAGGAATGAAAAACTTCCTGACACACCTATTCTTTAAATAAAGAAAGTTAAAGATTTTAGTACAACACCCTGACCATTTTAATAATGGTACAAGGGAAAACTGCGAGAGCTTCTTAATCATCATGCATGGTATACACACTTCTTTTTGTTTCTTCTATATTGTATATCAAGGATCATCTCTGAATGCTGATACAATATCAGTAGTTTTGTACTTTCTCATTTAATTTTCTACTGCGTATCTTCATGTTCACATTATAGTTAACTGAAAATCGACTAAGGGGGTGTTTGGATTGGCATTTTTAAGCACCTCCAAAAATAAGAGTTTAAAAGCCAAAAGCTTCTTAAAATAAGCCAATCCAAACACCCTCTACAACAATCATTGCCTGTCTTTCTTTGATTCTTCTCTCTGTTTGTCTCTCTGAAAGTTCTTTTGATTTTGCTCTCTCCATGCACTCTTTGCTTTATATGGAATTGCTGGTCAGTTGTATGCTCTGATAGTTATCATAAAGTTGCAGCACCCAGAAAATAATACATGTTTCTTCTTCCCTCATTTTCTTTTATAATTGGTCATACAGCTTATTAGTATTTTATATTTTGCAGCAACCTTCTTCTTC</genome_strand>
        <mrna_strand>CCTCACTCTTACACTCTCTCCATGCGTTCTTGTTCATGCTTCAAGGTCCTACTCAAGAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTAATCTTGGAACTGTTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAAGAATCCTCCCTAATTTGCCT......................................................................................................................................................................................................................................................................................................................................................................AAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGATCCTCCTGTGAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTACCGAAGATCTCTTTGGGACTCTAGTACCATGCCCTTTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTTCTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346555" ref_strand="+" ref_description="SGN-E346555 [cTOF-28-I8]">
      <seq>tcactcttacactctctccatgcgttcttgttcatgcttcaaggtcctactcaagaacagcttctaatcttggaactgttcaatctcttcgcagctgagtctgattatgtctggaagaatcctccctaatttgcctttggtgaatctgagtgaagtcctgtggaatgaacagcttgtttcatgcatgttcaactgcaatattaacaaggactagccatcttgttgtgaagagttcaatctgtggatttccatctctttcatggaagacaagctttggtcatgctagaattgggaaagttgattccaacttgtatttgaatagagtttctgttcgttgcttttcgtccaaaaaacatagtggagatagttctccatcgcagaattctgagttcactacagaaatgaaagaagagagagatggtttctttgttgttaggaaaggagatctggnttggagtctacaaaaacttgagtgattgccagacccaagtcggatcatcgatatgtgatcctcctgtgaagtgtgtacaaaggctatgccatgcctaaggacacagaagaatatcttctttcttgtgggcttaaaaatgctctctattctatcagagctgcagatcttacccgaagatctctttgggactctagtaccatgcccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="22857" stop="26344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23157" g_stop="23216" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23217" i_stop="24050" i_length="834">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24051" g_stop="24126" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="136" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24127" i_stop="24484" i_length="358">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24485" g_stop="24851" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="501" r_length="365" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24852" i_stop="25889" i_length="1038">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25890" g_stop="26044" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="658" r_length="157" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E346555" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23157" e_stop="23216"/>
          <exon e_start="24051" e_stop="24126"/>
          <exon e_start="24485" e_stop="24851"/>
          <exon e_start="25890" e_stop="26044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTTACACTCTCTCCATGCGTTCTTGTTCATGCTTCAAGGTCCTACTCAAGAACAGGTCAGTCTCATCTGGTAATTGAGGGGTATGTATGTTTTCTCTGTTTGTTAAAATCTTCGATTTGATGACTCCCACCCCAAATTAGGGTTCAAAATTCTTTAAAAATCTATTCTTTTTCGATTTTCTGAATACCCTTTACAGTTTTGCTCATAAAGTTTGCATTTTTATGGAGTTTGGAAGTTCTATGTGCAACCCCTTTTCAGCTTGGTCTTGTATTGTTAATATAATGTGGACACATGAAAGACTTTTGCTTTTTCCAAAGCATATTGACTCAAAGTTTGGATTTTTATGGCTGTAGGGAGGAAAATCCTTCATGATATTCTTGTAAATTCAACCTTTAAGCTGTCTATTGTATGTGTTGATAAAAGAAAATGGAATGTTGTTTTCTTTTTTCTTTTAATGATGCAGAAGGGGAAAAATAACTTGTTTCCTATTTAGTTTTATTGTTATTTGAATTTGGACTGTAAAATAAATAAGCAATTTAGTTCTTATAATCAATCAATGTAATTAAAAAAAAAAATCTTATAATCAATCAGTCAACTTGGTTGAGTTCAGAGTATAGTGTGCACAATTGTATTTATTTTAGTTACACAGATTTCGCTCAGTGATGTTGCGGCTATAGAAGTGAAAGAAAGTAAAGAGTGGATGAAGAATAAGTTTCTTTGGTCTGAAGGTTTTAGGGAAATCACTCACACATAATATGTCTTTTAATAAGCGAACGTTAGATCTTTTTTTGTTTATACTTTGTAGTTTTGGAACTTTTGGATTTTCTTCGAGTTACCTTTACAGATCTTTTCTTCTGTTGATTTCCTTGATATTTCTTTGGAATTGCAGCTTCTAATCTTGGAACTGTTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAAGAATCCTCCCTAATTTGCCTGTAAATAAAATTTAACTCTGGTTTGCTATTCTGTATTTTCTGCTAATGTCATCAAGTAGATGAAAAGTTAAGTCATTTTAAAGAAGCTTCTTTTTTCTTTCAACAAACAAAAGATGCAGAAAATGAGCATTAAAAAGTTCTTATAAAGTATAAGTCTGATCTTAATGGAGTTTATTTTAGAATTGCGCAAATGATTAATTGTACGCTTTTTCAGTTGGTCATGTTGTGCATGTAGAAGTGGAGGAGAGGAAATTAGATGGAGTATACGTTTATTTTCTTCTCTTCAAATGGATTTTATTATATATATCAGTTGAATGAGCAAATATACAATTTTCCTTTTTTCCTTTTTGTTTTCCAGAAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGG-TTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCGGTAACTACTGTTATTTCAGCCATTTATTGATCTGTTGTTTGTAGATGACTTTTATTCCCAGGAAAGACATAAAGACAAATACGACTCATCAGAAATTATCCATACATTATGTACAAAATTTACTTTTTCATATTCTTGATGATTAATCATAGGTAGATTCAGCCAAAAAGTCAAAACCTTGTGTAGTAATAACATTACCTTATTTTTTACTCTCTCCGTCCAGTTTACTTGTCCAACATTGACTTGGCACACCCTTAAGGAGCAATAACTAAAATGACAAATTTTACTATATCAACCTTTGAAATAATAAACTTAATTTTTTGGGAAATACACTCTGAAATGATTATAGTTAATAATAAGGGTAAATTAGGAACTTAGTGAGAACTTACCTCTTGGTTTTCCGAACTGCACAAGTAAAAGTGGACATTTATTATTAGTATAGTAGACTAGTAAAAGTGTAAAAAGGGAGTAACTGCAATTTCAGATAAGCTCATTGAGTGACTGACAATTGTTAAGGAATGCTCTAATTGAAATCGGAGGATAGTTTAAGTAATTATGTCTTCTATAGGTTATTCTTTTGCCTCGTTGTATTTGTAAAACAATATCTGTGAATACGAGGATAAAAGAAAGAGGTAAATTGAGTTAATTGTTTACCTTTCCATTAGAAAGTATTTTCCCAAAGTTCTCTGTTCATTTCCAGCAACCATGCCTTCTCCATAATGTTAGGATTTCTCTGTCACTTCATCTGCCTATTGCCAAAACTTGAGAACATGTAGTATGGATAGATAGGTCTTCTGCTGTAATTGGACGATGCTTGTGAGATGACTTCCCAGTGGATTCTTTGACTTCTTGCACATATTATAAGGGGTCAAATCTTGTGAAGCTTTTGTTCATCCTTGGCGCTGCAGGCTTATTTTAGTGAAATCTAGTTATAACAAATAAAATATAAATAAAAAAGGAAGATGTTATCACAATGAAGTTTCCAGACTTGCAATTGATATAATGAGTTGTTTTCTCTTCCTCTTCTGTTTCTGGCAGATATGTGATCCTCCTGTG-AGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTA-CCGAAGATCTCTTTGGGACTCTAGTACCATGCCCTTT</genome_strand>
        <mrna_strand>TCACTCTTACACTCTCTCCATGCGTTCTTGTTCATGCTTCAAGGTCCTACTCAAGAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTAATCTTGGAACTGTTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAAGAATCCTCCCTAATTTGCCT......................................................................................................................................................................................................................................................................................................................................................................---TTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGNTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGATCCTCCTGTGAAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTACCCGAAGATCTCTTTGGGACTCTAGTACCATGCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315004" ref_strand="+" ref_description="SGN-E315004 [cTOA-31-O22]">
      <seq>cactctctccatgcgttcttgttcatgcttcaaggtcctactcaagaacaggtcagtctcatctggtaattgagggcttctaatcttggaactgttcaatctcttcgcagctgagtctgattatgtctggaagaatcctccctaatttgcctaagttggtgaatctgagtgaagtcctgtggaatgaacagcttgtttcatgcatgttcaactgcaatattaacaaggactagccatcttgttgtgaagagttcaatctgtggatttccatctctttcatggaagacaagctttggtcatgctagaattgggaaagttgattccaacttgtatttgaatagagtttctgttcgttgcttttcgtccaaaaaacatagtggagatagttctccatcgcagaattctgagttcactacagaaatgaaagaagagagagatggtttctttgttgttaggaaaggagatctgggtggagtctacaaaacttgagtgattgccagacccaagtcggatcatcgatatgtgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="22866" stop="25154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23166" g_stop="23241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23242" i_stop="24050" i_length="809">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24051" g_stop="24126" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="152" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24127" i_stop="24484" i_length="358">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24485" g_stop="24851" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="518" r_length="366" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E315004" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23166" e_stop="23241"/>
          <exon e_start="24051" e_stop="24126"/>
          <exon e_start="24485" e_stop="24851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTCTCCATGCGTTCTTGTTCATGCTTCAAGGTCCTACTCAAGAACAGGTCAGTCTCATCTGGTAATTGAGGGGTATGTATGTTTTCTCTGTTTGTTAAAATCTTCGATTTGATGACTCCCACCCCAAATTAGGGTTCAAAATTCTTTAAAAATCTATTCTTTTTCGATTTTCTGAATACCCTTTACAGTTTTGCTCATAAAGTTTGCATTTTTATGGAGTTTGGAAGTTCTATGTGCAACCCCTTTTCAGCTTGGTCTTGTATTGTTAATATAATGTGGACACATGAAAGACTTTTGCTTTTTCCAAAGCATATTGACTCAAAGTTTGGATTTTTATGGCTGTAGGGAGGAAAATCCTTCATGATATTCTTGTAAATTCAACCTTTAAGCTGTCTATTGTATGTGTTGATAAAAGAAAATGGAATGTTGTTTTCTTTTTTCTTTTAATGATGCAGAAGGGGAAAAATAACTTGTTTCCTATTTAGTTTTATTGTTATTTGAATTTGGACTGTAAAATAAATAAGCAATTTAGTTCTTATAATCAATCAATGTAATTAAAAAAAAAAATCTTATAATCAATCAGTCAACTTGGTTGAGTTCAGAGTATAGTGTGCACAATTGTATTTATTTTAGTTACACAGATTTCGCTCAGTGATGTTGCGGCTATAGAAGTGAAAGAAAGTAAAGAGTGGATGAAGAATAAGTTTCTTTGGTCTGAAGGTTTTAGGGAAATCACTCACACATAATATGTCTTTTAATAAGCGAACGTTAGATCTTTTTTTGTTTATACTTTGTAGTTTTGGAACTTTTGGATTTTCTTCGAGTTACCTTTACAGATCTTTTCTTCTGTTGATTTCCTTGATATTTCTTTGGAATTGCAGCTTCTAATCTTGGAACTGTTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAAGAATCCTCCCTAATTTGCCTGTAAATAAAATTTAACTCTGGTTTGCTATTCTGTATTTTCTGCTAATGTCATCAAGTAGATGAAAAGTTAAGTCATTTTAAAGAAGCTTCTTTTTTCTTTCAACAAACAAAAGATGCAGAAAATGAGCATTAAAAAGTTCTTATAAAGTATAAGTCTGATCTTAATGGAGTTTATTTTAGAATTGCGCAAATGATTAATTGTACGCTTTTTCAGTTGGTCATGTTGTGCATGTAGAAGTGGAGGAGAGGAAATTAGATGGAGTATACGTTTATTTTCTTCTCTTCAAATGGATTTTATTATATATATCAGTTGAATGAGCAAATATACAATTTTCCTTTTTTCCTTTTTGTTTTCCAGAAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCG</genome_strand>
        <mrna_strand>CACTCTCTCCATGCGTTCTTGTTCATGCTTCAAGGTCCTACTCAAGAACAGGTCAGTCTCATCTGGTAATTGAGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTAATCTTGGAACTGTTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAAGAATCCTCCCTAATTTGCCT......................................................................................................................................................................................................................................................................................................................................................................AAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGGTGGAGTCTAC-AAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484294" ref_strand="+" ref_description="SGN-E484294 [cSTE-12-H8]">
      <seq>cgaggcctcacctcttaccacctctctccactgcgttcttgttcactgcttcaaggtcctactcaagaaccaggtcagtctcatctggtaattgagggcttctaatcttggaactattcaatctcttcgcagctgagtctgattatgtctggaggaatcctccctaatttgcctaagttggtgaatctgactgaagtcctgtggaatgaacagcttgtttcatgcatgttcaactgcaatattaacaaggactagccatcttgttgtgaagagttcaatctgtggatttccatctctttcatggaagacaagcgttggtcatgctagaattagaaaagttgattccaacttgtgtttgaatagagtttctgtttgttgctattcgtccaaaaaacatagtggagatagttctccatcgcagaattctgattccactccagaaatgaaagaagagagagatggtttctttgttgttaggaaaggagatctggttggagtctacaaaaacttgagtgattgccagacccaagttggatcatcgatatgtgatcctnctgttagtgtgtacaaaggctatgccatgcctaaagacacagaagaatatcttctttcttgtgggcttaaaatgctctctattctatcagagctgcagatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="22856" stop="26306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23169" g_stop="23241" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="98" r_length="76" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23242" i_stop="24050" i_length="809">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24051" g_stop="24126" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="174" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24127" i_stop="24484" i_length="358">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24485" g_stop="24851" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="541" r_length="367" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24852" i_stop="25889" i_length="1038">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25890" g_stop="26006" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="657" r_length="116" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E484294" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23169" e_stop="23241"/>
          <exon e_start="24051" e_stop="24126"/>
          <exon e_start="24485" e_stop="24851"/>
          <exon e_start="25890" e_stop="26006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCCA-TGCGTTCTTGTTCA-TGCTTCAAGGTCCTACTCAAGAA-CAGGTCAGTCTCATCTGGTAATTGAGGGGTATGTATGTTTTCTCTGTTTGTTAAAATCTTCGATTTGATGACTCCCACCCCAAATTAGGGTTCAAAATTCTTTAAAAATCTATTCTTTTTCGATTTTCTGAATACCCTTTACAGTTTTGCTCATAAAGTTTGCATTTTTATGGAGTTTGGAAGTTCTATGTGCAACCCCTTTTCAGCTTGGTCTTGTATTGTTAATATAATGTGGACACATGAAAGACTTTTGCTTTTTCCAAAGCATATTGACTCAAAGTTTGGATTTTTATGGCTGTAGGGAGGAAAATCCTTCATGATATTCTTGTAAATTCAACCTTTAAGCTGTCTATTGTATGTGTTGATAAAAGAAAATGGAATGTTGTTTTCTTTTTTCTTTTAATGATGCAGAAGGGGAAAAATAACTTGTTTCCTATTTAGTTTTATTGTTATTTGAATTTGGACTGTAAAATAAATAAGCAATTTAGTTCTTATAATCAATCAATGTAATTAAAAAAAAAAATCTTATAATCAATCAGTCAACTTGGTTGAGTTCAGAGTATAGTGTGCACAATTGTATTTATTTTAGTTACACAGATTTCGCTCAGTGATGTTGCGGCTATAGAAGTGAAAGAAAGTAAAGAGTGGATGAAGAATAAGTTTCTTTGGTCTGAAGGTTTTAGGGAAATCACTCACACATAATATGTCTTTTAATAAGCGAACGTTAGATCTTTTTTTGTTTATACTTTGTAGTTTTGGAACTTTTGGATTTTCTTCGAGTTACCTTTACAGATCTTTTCTTCTGTTGATTTCCTTGATATTTCTTTGGAATTGCAGCTTCTAATCTTGGAACTGTTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAAGAATCCTCCCTAATTTGCCTGTAAATAAAATTTAACTCTGGTTTGCTATTCTGTATTTTCTGCTAATGTCATCAAGTAGATGAAAAGTTAAGTCATTTTAAAGAAGCTTCTTTTTTCTTTCAACAAACAAAAGATGCAGAAAATGAGCATTAAAAAGTTCTTATAAAGTATAAGTCTGATCTTAATGGAGTTTATTTTAGAATTGCGCAAATGATTAATTGTACGCTTTTTCAGTTGGTCATGTTGTGCATGTAGAAGTGGAGGAGAGGAAATTAGATGGAGTATACGTTTATTTTCTTCTCTTCAAATGGATTTTATTATATATATCAGTTGAATGAGCAAATATACAATTTTCCTTTTTTCCTTTTTGTTTTCCAGAAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCGGTAACTACTGTTATTTCAGCCATTTATTGATCTGTTGTTTGTAGATGACTTTTATTCCCAGGAAAGACATAAAGACAAATACGACTCATCAGAAATTATCCATACATTATGTACAAAATTTACTTTTTCATATTCTTGATGATTAATCATAGGTAGATTCAGCCAAAAAGTCAAAACCTTGTGTAGTAATAACATTACCTTATTTTTTACTCTCTCCGTCCAGTTTACTTGTCCAACATTGACTTGGCACACCCTTAAGGAGCAATAACTAAAATGACAAATTTTACTATATCAACCTTTGAAATAATAAACTTAATTTTTTGGGAAATACACTCTGAAATGATTATAGTTAATAATAAGGGTAAATTAGGAACTTAGTGAGAACTTACCTCTTGGTTTTCCGAACTGCACAAGTAAAAGTGGACATTTATTATTAGTATAGTAGACTAGTAAAAGTGTAAAAAGGGAGTAACTGCAATTTCAGATAAGCTCATTGAGTGACTGACAATTGTTAAGGAATGCTCTAATTGAAATCGGAGGATAGTTTAAGTAATTATGTCTTCTATAGGTTATTCTTTTGCCTCGTTGTATTTGTAAAACAATATCTGTGAATACGAGGATAAAAGAAAGAGGTAAATTGAGTTAATTGTTTACCTTTCCATTAGAAAGTATTTTCCCAAAGTTCTCTGTTCATTTCCAGCAACCATGCCTTCTCCATAATGTTAGGATTTCTCTGTCACTTCATCTGCCTATTGCCAAAACTTGAGAACATGTAGTATGGATAGATAGGTCTTCTGCTGTAATTGGACGATGCTTGTGAGATGACTTCCCAGTGGATTCTTTGACTTCTTGCACATATTATAAGGGGTCAAATCTTGTGAAGCTTTTGTTCATCCTTGGCGCTGCAGGCTTATTTTAGTGAAATCTAGTTATAACAAATAAAATATAAATAAAAAAGGAAGATGTTATCACAATGAAGTTTCCAGACTTGCAATTGATATAATGAGTTGTTTTCTCTTCCTCTTCTGTTTCTGGCAGATATGTGATCCTCCTGTGAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTT</genome_strand>
        <mrna_strand>TCTCTCCACTGCGTTCTTGTTCACTGCTTCAAGGTCCTACTCAAGAACCAGGTCAGTCTCATCTGGTAATTGAGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTAATCTTGGAACTATTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAGGAATCCTCCCTAATTTGCCT......................................................................................................................................................................................................................................................................................................................................................................AAGTTGGTGAATCTGACTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCGTTGGTCATGCTAGAATTAGAAAAGTTGATTCCAACTTGTGTTTGAATAGAGTTTCTGTTTGTTGCTATTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGATTCCACTCCAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTTGGATCATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGATCCTNCTGTTAGTGTGTACAAAGGCTATGCCATGCCTAAAGACACAGAAGAATATCTTCTTTCTTGTGGGCTT-AAAATGCTCTCTATTCTATCAGAGCTGCAGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445102" ref_strand="+" ref_description="SGN-E445102 [cSTA-44-L21]">
      <seq>gtcctactcaagaacaggtcagtctcatctggtaattgagggaagttggtgaatctgactgaagtcctgtggaatgaacagcttgtttcatgcatgttcaactgcaatattaacaaggactagccatcttgttgtgaagagttcaatctgtggatttccatctctttcatggaagacaagcgttggtcatgctagaattagaaaagttgattccaacttgtatttgaatagagtttctgtttgttgctactcgtccaaaaaacatagtggagatagttctccatcgcagaattctgattccactccagaaatgaaagaagagagagatggtttctttgttgttaggaaaggagatctggttggagtctacaaaaacttgagtgattgccagacccaagttggatcatcgatatgcgatcctcctgttagtgtgtacaaaggctatgccatgcctaaggacacagaagaatatcttctttcttgtgggcttaaaaatgctctctattctatcagagctgcagatcttaccgaagatctctttgggcctctagtaccatgcccttttcagcaaccttcttcttcaaaaagtggaacatctgatcatttgccaaagaagaggccacangaagcagtgtggtcagaatatgcggatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="22900" stop="27629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23200" g_stop="23241" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23242" i_stop="24484" i_length="1243">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24485" g_stop="24851" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="409" r_length="367" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24852" i_stop="25889" i_length="1038">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25890" g_stop="26048" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="568" r_length="159" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26049" i_stop="27241" i_length="1193">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27242" g_stop="27322" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="649" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E445102" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23200" e_stop="23241"/>
          <exon e_start="24485" e_stop="24851"/>
          <exon e_start="25890" e_stop="26048"/>
          <exon e_start="27242" e_stop="27322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTACTCAAGAACAGGTCAGTCTCATCTGGTAATTGAGGGGTATGTATGTTTTCTCTGTTTGTTAAAATCTTCGATTTGATGACTCCCACCCCAAATTAGGGTTCAAAATTCTTTAAAAATCTATTCTTTTTCGATTTTCTGAATACCCTTTACAGTTTTGCTCATAAAGTTTGCATTTTTATGGAGTTTGGAAGTTCTATGTGCAACCCCTTTTCAGCTTGGTCTTGTATTGTTAATATAATGTGGACACATGAAAGACTTTTGCTTTTTCCAAAGCATATTGACTCAAAGTTTGGATTTTTATGGCTGTAGGGAGGAAAATCCTTCATGATATTCTTGTAAATTCAACCTTTAAGCTGTCTATTGTATGTGTTGATAAAAGAAAATGGAATGTTGTTTTCTTTTTTCTTTTAATGATGCAGAAGGGGAAAAATAACTTGTTTCCTATTTAGTTTTATTGTTATTTGAATTTGGACTGTAAAATAAATAAGCAATTTAGTTCTTATAATCAATCAATGTAATTAAAAAAAAAAATCTTATAATCAATCAGTCAACTTGGTTGAGTTCAGAGTATAGTGTGCACAATTGTATTTATTTTAGTTACACAGATTTCGCTCAGTGATGTTGCGGCTATAGAAGTGAAAGAAAGTAAAGAGTGGATGAAGAATAAGTTTCTTTGGTCTGAAGGTTTTAGGGAAATCACTCACACATAATATGTCTTTTAATAAGCGAACGTTAGATCTTTTTTTGTTTATACTTTGTAGTTTTGGAACTTTTGGATTTTCTTCGAGTTACCTTTACAGATCTTTTCTTCTGTTGATTTCCTTGATATTTCTTTGGAATTGCAGCTTCTAATCTTGGAACTGTTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAAGAATCCTCCCTAATTTGCCTGTAAATAAAATTTAACTCTGGTTTGCTATTCTGTATTTTCTGCTAATGTCATCAAGTAGATGAAAAGTTAAGTCATTTTAAAGAAGCTTCTTTTTTCTTTCAACAAACAAAAGATGCAGAAAATGAGCATTAAAAAGTTCTTATAAAGTATAAGTCTGATCTTAATGGAGTTTATTTTAGAATTGCGCAAATGATTAATTGTACGCTTTTTCAGTTGGTCATGTTGTGCATGTAGAAGTGGAGGAGAGGAAATTAGATGGAGTATACGTTTATTTTCTTCTCTTCAAATGGATTTTATTATATATATCAGTTGAATGAGCAAATATACAATTTTCCTTTTTTCCTTTTTGTTTTCCAGAAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCGGTAACTACTGTTATTTCAGCCATTTATTGATCTGTTGTTTGTAGATGACTTTTATTCCCAGGAAAGACATAAAGACAAATACGACTCATCAGAAATTATCCATACATTATGTACAAAATTTACTTTTTCATATTCTTGATGATTAATCATAGGTAGATTCAGCCAAAAAGTCAAAACCTTGTGTAGTAATAACATTACCTTATTTTTTACTCTCTCCGTCCAGTTTACTTGTCCAACATTGACTTGGCACACCCTTAAGGAGCAATAACTAAAATGACAAATTTTACTATATCAACCTTTGAAATAATAAACTTAATTTTTTGGGAAATACACTCTGAAATGATTATAGTTAATAATAAGGGTAAATTAGGAACTTAGTGAGAACTTACCTCTTGGTTTTCCGAACTGCACAAGTAAAAGTGGACATTTATTATTAGTATAGTAGACTAGTAAAAGTGTAAAAAGGGAGTAACTGCAATTTCAGATAAGCTCATTGAGTGACTGACAATTGTTAAGGAATGCTCTAATTGAAATCGGAGGATAGTTTAAGTAATTATGTCTTCTATAGGTTATTCTTTTGCCTCGTTGTATTTGTAAAACAATATCTGTGAATACGAGGATAAAAGAAAGAGGTAAATTGAGTTAATTGTTTACCTTTCCATTAGAAAGTATTTTCCCAAAGTTCTCTGTTCATTTCCAGCAACCATGCCTTCTCCATAATGTTAGGATTTCTCTGTCACTTCATCTGCCTATTGCCAAAACTTGAGAACATGTAGTATGGATAGATAGGTCTTCTGCTGTAATTGGACGATGCTTGTGAGATGACTTCCCAGTGGATTCTTTGACTTCTTGCACATATTATAAGGGGTCAAATCTTGTGAAGCTTTTGTTCATCCTTGGCGCTGCAGGCTTATTTTAGTGAAATCTAGTTATAACAAATAAAATATAAATAAAAAAGGAAGATGTTATCACAATGAAGTTTCCAGACTTGCAATTGATATAATGAGTTGTTTTCTCTTCCTCTTCTGTTTCTGGCAGATATGTGATCCTCCTGTGAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTACCGAAGATCTCTTTGGGACTCTAGTACCATGCCCTTTTCAGGTATAGCTCCTGAGCAGTTCTCTTGGATAAAATTTGTTCCTTTTTCTCAAAGGTGAATATTTGATTTCAAAACTTGTTGTCTATGAGGTTTCATATATGATTTCCTGTCTCTGAGAAGAAGAGGCTTTGAGGCTCCATCATTAGAATGTAATATTTTGCAACTTAATATCAGTTTATATTTTATATTAACCTCAAAGGAATCCCATGGTACTGTTAAAAACAACGACCTAAAGAAAAACTGTAATTGTCATGTTTCCACAGCTGTTCTCCAGAAACAAAACCATGAGGTGCCTGGCTGAATTTGTGTCTTTTTTCTAGAGAGTCTGATCCTGCTTTGGTAAACTTCTTTTGATAAACCGAGGGTCTATCAGAAACAACCTCTCTACCCCATAAAGGTAGGGGTAAGGTCTGCTTTTACATCCTACCCTCCCCAGACCCCATTTGTTGGATTTCATTGGGTATGGTTGTTGTTGACTAGAGAGTCTGAAAACTTTACCTGTTAAATGTCAGAGTTTTCATAATCCAACCACTATGACTCGATTGAAAGAAGTTTTTTCAACTTTAAAACTTGGCTGTACCTTAAAGGTATATCATAGGAATGAAAAACTTCCTGACACACCTATTCTTTAAATAAAGAAAGTTAAAGATTTTAGTACAACACCCTGACCATTTTAATAATGGTACAAGGGAAAACTGCGAGAGCTTCTTAATCATCATGCATGGTATACACACTTCTTTTTGTTTCTTCTATATTGTATATCAAGGATCATCTCTGAATGCTGATACAATATCAGTAGTTTTGTACTTTCTCATTTAATTTTCTACTGCGTATCTTCATGTTCACATTATAGTTAACTGAAAATCGACTAAGGGGGTGTTTGGATTGGCATTTTTAAGCACCTCCAAAAATAAGAGTTTAAAAGCCAAAAGCTTCTTAAAATAAGCCAATCCAAACACCCTCTACAACAATCATTGCCTGTCTTTCTTTGATTCTTCTCTCTGTTTGTCTCTCTGAAAGTTCTTTTGATTTTGCTCTCTCCATGCACTCTTTGCTTTATATGGAATTGCTGGTCAGTTGTATGCTCTGATAGTTATCATAAAGTTGCAGCACCCAGAAAATAATACATGTTTCTTCTTCCCTCATTTTCTTTTATAATTGGTCATACAGCTTATTAGTATTTTATATTTTGCAGCAACCTTCTTCTTCAAAAAGTGGAACATCTGATCATTTGCCAAAGAAGAGGCCACAGGAAGCAATGTGGTCAGAATATGCG</genome_strand>
        <mrna_strand>GTCCTACTCAAGAACAGGTCAGTCTCATCTGGTAATTGAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTGGTGAATCTGACTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCGTTGGTCATGCTAGAATTAGAAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTTGTTGCTACTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGATTCCACTCCAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTTGGATCATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCGATCCTCCTGTTAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTACCGAAGATCTCTTTGGGCCTCTAGTACCATGCCCTTTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTTCTTCTTCAAAAAGTGGAACATCTGATCATTTGCCAAAGAAGAGGCCACANGAAGCAGTGTGGTCAGAATATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419829" ref_strand="+" ref_description="SGN-E419829 [STM-30-E2]">
      <seq>gtcctactcaagaacaggtcagtctcatctggtaattgagggaagttggtgaatctgactgaagtcctgtggaatgaacagcttgtttcatgcatgttcaactgcaatattaacaaggactagccatcttgttgtgaagagttcaatctgtggatttccatctctttcatggaagacaagcgttggtcatgctagaattagaaaagttgattccaacttgtatttgaatagagtttctgtttgttgctactcgtccaaaaaacatagtggagatagttctccatcgcagaattctgattccactccagaaatgaaagaagagagagatggtttctttgttgttaggaaaggagatctggttggagtctacaaaaacttgagtgattgccagacccaagttggatcatcgatatgcgatcctcctgttagtgtgtacaaaggctatgccatgcctaaggacacagaagaatatcttctttcttgtgggcttaaaaatgctctctattctatcagagctgcagatcttaccgaagatctctttgggactctagtaccatgcccttttcagcaaccttcttcttcaaaaagtggaacatctgatcatttgccaaagaagaggccacaggaagcagtgtggtcagaatatgcggatgctgttggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="22900" stop="27637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23200" g_stop="23241" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23242" i_stop="24484" i_length="1243">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24485" g_stop="24851" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="409" r_length="367" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24852" i_stop="25889" i_length="1038">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25890" g_stop="26048" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="568" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26049" i_stop="27241" i_length="1193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27242" g_stop="27322" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="649" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E419829" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23200" e_stop="23241"/>
          <exon e_start="24485" e_stop="24851"/>
          <exon e_start="25890" e_stop="26048"/>
          <exon e_start="27242" e_stop="27322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTACTCAAGAACAGGTCAGTCTCATCTGGTAATTGAGGGGTATGTATGTTTTCTCTGTTTGTTAAAATCTTCGATTTGATGACTCCCACCCCAAATTAGGGTTCAAAATTCTTTAAAAATCTATTCTTTTTCGATTTTCTGAATACCCTTTACAGTTTTGCTCATAAAGTTTGCATTTTTATGGAGTTTGGAAGTTCTATGTGCAACCCCTTTTCAGCTTGGTCTTGTATTGTTAATATAATGTGGACACATGAAAGACTTTTGCTTTTTCCAAAGCATATTGACTCAAAGTTTGGATTTTTATGGCTGTAGGGAGGAAAATCCTTCATGATATTCTTGTAAATTCAACCTTTAAGCTGTCTATTGTATGTGTTGATAAAAGAAAATGGAATGTTGTTTTCTTTTTTCTTTTAATGATGCAGAAGGGGAAAAATAACTTGTTTCCTATTTAGTTTTATTGTTATTTGAATTTGGACTGTAAAATAAATAAGCAATTTAGTTCTTATAATCAATCAATGTAATTAAAAAAAAAAATCTTATAATCAATCAGTCAACTTGGTTGAGTTCAGAGTATAGTGTGCACAATTGTATTTATTTTAGTTACACAGATTTCGCTCAGTGATGTTGCGGCTATAGAAGTGAAAGAAAGTAAAGAGTGGATGAAGAATAAGTTTCTTTGGTCTGAAGGTTTTAGGGAAATCACTCACACATAATATGTCTTTTAATAAGCGAACGTTAGATCTTTTTTTGTTTATACTTTGTAGTTTTGGAACTTTTGGATTTTCTTCGAGTTACCTTTACAGATCTTTTCTTCTGTTGATTTCCTTGATATTTCTTTGGAATTGCAGCTTCTAATCTTGGAACTGTTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAAGAATCCTCCCTAATTTGCCTGTAAATAAAATTTAACTCTGGTTTGCTATTCTGTATTTTCTGCTAATGTCATCAAGTAGATGAAAAGTTAAGTCATTTTAAAGAAGCTTCTTTTTTCTTTCAACAAACAAAAGATGCAGAAAATGAGCATTAAAAAGTTCTTATAAAGTATAAGTCTGATCTTAATGGAGTTTATTTTAGAATTGCGCAAATGATTAATTGTACGCTTTTTCAGTTGGTCATGTTGTGCATGTAGAAGTGGAGGAGAGGAAATTAGATGGAGTATACGTTTATTTTCTTCTCTTCAAATGGATTTTATTATATATATCAGTTGAATGAGCAAATATACAATTTTCCTTTTTTCCTTTTTGTTTTCCAGAAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCGGTAACTACTGTTATTTCAGCCATTTATTGATCTGTTGTTTGTAGATGACTTTTATTCCCAGGAAAGACATAAAGACAAATACGACTCATCAGAAATTATCCATACATTATGTACAAAATTTACTTTTTCATATTCTTGATGATTAATCATAGGTAGATTCAGCCAAAAAGTCAAAACCTTGTGTAGTAATAACATTACCTTATTTTTTACTCTCTCCGTCCAGTTTACTTGTCCAACATTGACTTGGCACACCCTTAAGGAGCAATAACTAAAATGACAAATTTTACTATATCAACCTTTGAAATAATAAACTTAATTTTTTGGGAAATACACTCTGAAATGATTATAGTTAATAATAAGGGTAAATTAGGAACTTAGTGAGAACTTACCTCTTGGTTTTCCGAACTGCACAAGTAAAAGTGGACATTTATTATTAGTATAGTAGACTAGTAAAAGTGTAAAAAGGGAGTAACTGCAATTTCAGATAAGCTCATTGAGTGACTGACAATTGTTAAGGAATGCTCTAATTGAAATCGGAGGATAGTTTAAGTAATTATGTCTTCTATAGGTTATTCTTTTGCCTCGTTGTATTTGTAAAACAATATCTGTGAATACGAGGATAAAAGAAAGAGGTAAATTGAGTTAATTGTTTACCTTTCCATTAGAAAGTATTTTCCCAAAGTTCTCTGTTCATTTCCAGCAACCATGCCTTCTCCATAATGTTAGGATTTCTCTGTCACTTCATCTGCCTATTGCCAAAACTTGAGAACATGTAGTATGGATAGATAGGTCTTCTGCTGTAATTGGACGATGCTTGTGAGATGACTTCCCAGTGGATTCTTTGACTTCTTGCACATATTATAAGGGGTCAAATCTTGTGAAGCTTTTGTTCATCCTTGGCGCTGCAGGCTTATTTTAGTGAAATCTAGTTATAACAAATAAAATATAAATAAAAAAGGAAGATGTTATCACAATGAAGTTTCCAGACTTGCAATTGATATAATGAGTTGTTTTCTCTTCCTCTTCTGTTTCTGGCAGATATGTGATCCTCCTGTGAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTACCGAAGATCTCTTTGGGACTCTAGTACCATGCCCTTTTCAGGTATAGCTCCTGAGCAGTTCTCTTGGATAAAATTTGTTCCTTTTTCTCAAAGGTGAATATTTGATTTCAAAACTTGTTGTCTATGAGGTTTCATATATGATTTCCTGTCTCTGAGAAGAAGAGGCTTTGAGGCTCCATCATTAGAATGTAATATTTTGCAACTTAATATCAGTTTATATTTTATATTAACCTCAAAGGAATCCCATGGTACTGTTAAAAACAACGACCTAAAGAAAAACTGTAATTGTCATGTTTCCACAGCTGTTCTCCAGAAACAAAACCATGAGGTGCCTGGCTGAATTTGTGTCTTTTTTCTAGAGAGTCTGATCCTGCTTTGGTAAACTTCTTTTGATAAACCGAGGGTCTATCAGAAACAACCTCTCTACCCCATAAAGGTAGGGGTAAGGTCTGCTTTTACATCCTACCCTCCCCAGACCCCATTTGTTGGATTTCATTGGGTATGGTTGTTGTTGACTAGAGAGTCTGAAAACTTTACCTGTTAAATGTCAGAGTTTTCATAATCCAACCACTATGACTCGATTGAAAGAAGTTTTTTCAACTTTAAAACTTGGCTGTACCTTAAAGGTATATCATAGGAATGAAAAACTTCCTGACACACCTATTCTTTAAATAAAGAAAGTTAAAGATTTTAGTACAACACCCTGACCATTTTAATAATGGTACAAGGGAAAACTGCGAGAGCTTCTTAATCATCATGCATGGTATACACACTTCTTTTTGTTTCTTCTATATTGTATATCAAGGATCATCTCTGAATGCTGATACAATATCAGTAGTTTTGTACTTTCTCATTTAATTTTCTACTGCGTATCTTCATGTTCACATTATAGTTAACTGAAAATCGACTAAGGGGGTGTTTGGATTGGCATTTTTAAGCACCTCCAAAAATAAGAGTTTAAAAGCCAAAAGCTTCTTAAAATAAGCCAATCCAAACACCCTCTACAACAATCATTGCCTGTCTTTCTTTGATTCTTCTCTCTGTTTGTCTCTCTGAAAGTTCTTTTGATTTTGCTCTCTCCATGCACTCTTTGCTTTATATGGAATTGCTGGTCAGTTGTATGCTCTGATAGTTATCATAAAGTTGCAGCACCCAGAAAATAATACATGTTTCTTCTTCCCTCATTTTCTTTTATAATTGGTCATACAGCTTATTAGTATTTTATATTTTGCAGCAACCTTCTTCTTCAAAAAGTGGAACATCTGATCATTTGCCAAAGAAGAGGCCACAGGAAGCAATGTGGTCAGAATATGCG</genome_strand>
        <mrna_strand>GTCCTACTCAAGAACAGGTCAGTCTCATCTGGTAATTGAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTGGTGAATCTGACTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCGTTGGTCATGCTAGAATTAGAAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTTGTTGCTACTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGATTCCACTCCAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTTGGATCATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCGATCCTCCTGTTAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTACCGAAGATCTCTTTGGGACTCTAGTACCATGCCCTTTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTTCTTCTTCAAAAAGTGGAACATCTGATCATTTGCCAAAGAAGAGGCCACAGGAAGCAGTGTGGTCAGAATATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445103" ref_strand="+" ref_description="SGN-E445103 [cSTA-44-L21]">
      <seq>gtcctactcaagaacaggtcagtctcatctggtaattgagggaagttggtgaatctgactgaagtcctgtggaatgaacagcttgtttcatgcatgttcaactgcaatattaacaaggactagccatcttgttgtgaagagttcaatctgtggatttccatctctttcatggaagacaagcgttggtcatgctagaattagaaaagttgattccaacttgtatttgaatagagtttctgtttgttgctactcgtccaaaaaacatagtggagatagttctccatcgcagaattctgattccactccagaaatgaaagaagagagagatggtttctttgttgttaggaaaggagatctggttggagtctacaaaaacttgagtgattgccagacccaagttggatcatcgatatgcgatcctcctgttagtgtgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="22900" stop="25154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23200" g_stop="23241" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23242" i_stop="24484" i_length="1243">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24485" g_stop="24851" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="409" r_length="367" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E445103" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23200" e_stop="23241"/>
          <exon e_start="24485" e_stop="24851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTACTCAAGAACAGGTCAGTCTCATCTGGTAATTGAGGGGTATGTATGTTTTCTCTGTTTGTTAAAATCTTCGATTTGATGACTCCCACCCCAAATTAGGGTTCAAAATTCTTTAAAAATCTATTCTTTTTCGATTTTCTGAATACCCTTTACAGTTTTGCTCATAAAGTTTGCATTTTTATGGAGTTTGGAAGTTCTATGTGCAACCCCTTTTCAGCTTGGTCTTGTATTGTTAATATAATGTGGACACATGAAAGACTTTTGCTTTTTCCAAAGCATATTGACTCAAAGTTTGGATTTTTATGGCTGTAGGGAGGAAAATCCTTCATGATATTCTTGTAAATTCAACCTTTAAGCTGTCTATTGTATGTGTTGATAAAAGAAAATGGAATGTTGTTTTCTTTTTTCTTTTAATGATGCAGAAGGGGAAAAATAACTTGTTTCCTATTTAGTTTTATTGTTATTTGAATTTGGACTGTAAAATAAATAAGCAATTTAGTTCTTATAATCAATCAATGTAATTAAAAAAAAAAATCTTATAATCAATCAGTCAACTTGGTTGAGTTCAGAGTATAGTGTGCACAATTGTATTTATTTTAGTTACACAGATTTCGCTCAGTGATGTTGCGGCTATAGAAGTGAAAGAAAGTAAAGAGTGGATGAAGAATAAGTTTCTTTGGTCTGAAGGTTTTAGGGAAATCACTCACACATAATATGTCTTTTAATAAGCGAACGTTAGATCTTTTTTTGTTTATACTTTGTAGTTTTGGAACTTTTGGATTTTCTTCGAGTTACCTTTACAGATCTTTTCTTCTGTTGATTTCCTTGATATTTCTTTGGAATTGCAGCTTCTAATCTTGGAACTGTTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAAGAATCCTCCCTAATTTGCCTGTAAATAAAATTTAACTCTGGTTTGCTATTCTGTATTTTCTGCTAATGTCATCAAGTAGATGAAAAGTTAAGTCATTTTAAAGAAGCTTCTTTTTTCTTTCAACAAACAAAAGATGCAGAAAATGAGCATTAAAAAGTTCTTATAAAGTATAAGTCTGATCTTAATGGAGTTTATTTTAGAATTGCGCAAATGATTAATTGTACGCTTTTTCAGTTGGTCATGTTGTGCATGTAGAAGTGGAGGAGAGGAAATTAGATGGAGTATACGTTTATTTTCTTCTCTTCAAATGGATTTTATTATATATATCAGTTGAATGAGCAAATATACAATTTTCCTTTTTTCCTTTTTGTTTTCCAGAAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCG</genome_strand>
        <mrna_strand>GTCCTACTCAAGAACAGGTCAGTCTCATCTGGTAATTGAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTGGTGAATCTGACTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCGTTGGTCATGCTAGAATTAGAAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTTGTTGCTACTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGATTCCACTCCAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTTGGATCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413306" ref_strand="+" ref_description="SGN-E413306 [STM-17-N17]">
      <seq>gtaattgagggcttctaatcttggaactgttcaatctcttcggagctgagtctgattatgtctggaggaatcctccctaatttgcctcttgtttcatgcatgttcaactgcaatattaacaaggactagccatcttgttgtgaagagttcaatctgtggatttccatctctttcatggaagacaagcgttggtcatgctagaattagaaaagttgattccaacttgtatttgaatagagtttctgtttgttgctattcgtcccaaaaacatagtggagatagttctccatcgcagaattctgattccactccagaaatgaaagaagagagagatggtttctttgttgttaggaaaggagatctggttggagtctacaaaaacttgagtgattgccagacccaagttggatcatcgatatgtgatcctcctgttagtgtgtacaaaggctatgccatgcctaaggacacagaagaatatcttctttcttgtgggcttaaaaatgctctctattctatcagagctgcagatcttaccgaagatctctttgggactctagtaccatgcccttttcagcaaccttcttcttcaaaaagtggaacatctgatcatttgccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="23750" stop="27584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24051" g_stop="24126" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="87" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24127" i_stop="24523" i_length="397">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24524" g_stop="24851" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="415" r_length="328" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24852" i_stop="25889" i_length="1038">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25890" g_stop="26048" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="574" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26049" i_stop="27241" i_length="1193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27242" g_stop="27284" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="617" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E413306" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24051" e_stop="24126"/>
          <exon e_start="24524" e_stop="24851"/>
          <exon e_start="25890" e_stop="26048"/>
          <exon e_start="27242" e_stop="27284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTAATCTTGGAACTGTTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAAGAATCCTCCCTAATTTGCCTGTAAATAAAATTTAACTCTGGTTTGCTATTCTGTATTTTCTGCTAATGTCATCAAGTAGATGAAAAGTTAAGTCATTTTAAAGAAGCTTCTTTTTTCTTTCAACAAACAAAAGATGCAGAAAATGAGCATTAAAAAGTTCTTATAAAGTATAAGTCTGATCTTAATGGAGTTTATTTTAGAATTGCGCAAATGATTAATTGTACGCTTTTTCAGTTGGTCATGTTGTGCATGTAGAAGTGGAGGAGAGGAAATTAGATGGAGTATACGTTTATTTTCTTCTCTTCAAATGGATTTTATTATATATATCAGTTGAATGAGCAAATATACAATTTTCCTTTTTTCCTTTTTGTTTTCCAGAAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCGGTAACTACTGTTATTTCAGCCATTTATTGATCTGTTGTTTGTAGATGACTTTTATTCCCAGGAAAGACATAAAGACAAATACGACTCATCAGAAATTATCCATACATTATGTACAAAATTTACTTTTTCATATTCTTGATGATTAATCATAGGTAGATTCAGCCAAAAAGTCAAAACCTTGTGTAGTAATAACATTACCTTATTTTTTACTCTCTCCGTCCAGTTTACTTGTCCAACATTGACTTGGCACACCCTTAAGGAGCAATAACTAAAATGACAAATTTTACTATATCAACCTTTGAAATAATAAACTTAATTTTTTGGGAAATACACTCTGAAATGATTATAGTTAATAATAAGGGTAAATTAGGAACTTAGTGAGAACTTACCTCTTGGTTTTCCGAACTGCACAAGTAAAAGTGGACATTTATTATTAGTATAGTAGACTAGTAAAAGTGTAAAAAGGGAGTAACTGCAATTTCAGATAAGCTCATTGAGTGACTGACAATTGTTAAGGAATGCTCTAATTGAAATCGGAGGATAGTTTAAGTAATTATGTCTTCTATAGGTTATTCTTTTGCCTCGTTGTATTTGTAAAACAATATCTGTGAATACGAGGATAAAAGAAAGAGGTAAATTGAGTTAATTGTTTACCTTTCCATTAGAAAGTATTTTCCCAAAGTTCTCTGTTCATTTCCAGCAACCATGCCTTCTCCATAATGTTAGGATTTCTCTGTCACTTCATCTGCCTATTGCCAAAACTTGAGAACATGTAGTATGGATAGATAGGTCTTCTGCTGTAATTGGACGATGCTTGTGAGATGACTTCCCAGTGGATTCTTTGACTTCTTGCACATATTATAAGGGGTCAAATCTTGTGAAGCTTTTGTTCATCCTTGGCGCTGCAGGCTTATTTTAGTGAAATCTAGTTATAACAAATAAAATATAAATAAAAAAGGAAGATGTTATCACAATGAAGTTTCCAGACTTGCAATTGATATAATGAGTTGTTTTCTCTTCCTCTTCTGTTTCTGGCAGATATGTGATCCTCCTGTGAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTACCGAAGATCTCTTTGGGACTCTAGTACCATGCCCTTTTCAGGTATAGCTCCTGAGCAGTTCTCTTGGATAAAATTTGTTCCTTTTTCTCAAAGGTGAATATTTGATTTCAAAACTTGTTGTCTATGAGGTTTCATATATGATTTCCTGTCTCTGAGAAGAAGAGGCTTTGAGGCTCCATCATTAGAATGTAATATTTTGCAACTTAATATCAGTTTATATTTTATATTAACCTCAAAGGAATCCCATGGTACTGTTAAAAACAACGACCTAAAGAAAAACTGTAATTGTCATGTTTCCACAGCTGTTCTCCAGAAACAAAACCATGAGGTGCCTGGCTGAATTTGTGTCTTTTTTCTAGAGAGTCTGATCCTGCTTTGGTAAACTTCTTTTGATAAACCGAGGGTCTATCAGAAACAACCTCTCTACCCCATAAAGGTAGGGGTAAGGTCTGCTTTTACATCCTACCCTCCCCAGACCCCATTTGTTGGATTTCATTGGGTATGGTTGTTGTTGACTAGAGAGTCTGAAAACTTTACCTGTTAAATGTCAGAGTTTTCATAATCCAACCACTATGACTCGATTGAAAGAAGTTTTTTCAACTTTAAAACTTGGCTGTACCTTAAAGGTATATCATAGGAATGAAAAACTTCCTGACACACCTATTCTTTAAATAAAGAAAGTTAAAGATTTTAGTACAACACCCTGACCATTTTAATAATGGTACAAGGGAAAACTGCGAGAGCTTCTTAATCATCATGCATGGTATACACACTTCTTTTTGTTTCTTCTATATTGTATATCAAGGATCATCTCTGAATGCTGATACAATATCAGTAGTTTTGTACTTTCTCATTTAATTTTCTACTGCGTATCTTCATGTTCACATTATAGTTAACTGAAAATCGACTAAGGGGGTGTTTGGATTGGCATTTTTAAGCACCTCCAAAAATAAGAGTTTAAAAGCCAAAAGCTTCTTAAAATAAGCCAATCCAAACACCCTCTACAACAATCATTGCCTGTCTTTCTTTGATTCTTCTCTCTGTTTGTCTCTCTGAAAGTTCTTTTGATTTTGCTCTCTCCATGCACTCTTTGCTTTATATGGAATTGCTGGTCAGTTGTATGCTCTGATAGTTATCATAAAGTTGCAGCACCCAGAAAATAATACATGTTTCTTCTTCCCTCATTTTCTTTTATAATTGGTCATACAGCTTATTAGTATTTTATATTTTGCAGCAACCTTCTTCTTCAAAAAGTGGAACATCTGATCATTTGCCAA</genome_strand>
        <mrna_strand>CTTCTAATCTTGGAACTGTTCAATCTCTTCGGAGCTGAGTCTGATTATGTCTGGAGGAATCCTCCCTAATTTGCCT.............................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCGTTGGTCATGCTAGAATTAGAAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTTGTTGCTATTCGTCCCAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGATTCCACTCCAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTTGGATCATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGATCCTCCTGTTAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTACCGAAGATCTCTTTGGGACTCTAGTACCATGCCCTTTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTTCTTCTTCAAAAAGTGGAACATCTGATCATTTGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463226" ref_strand="+" ref_description="SGN-E463226 [cPRO-14-A13]">
      <seq>ctttcatggaagacaagctttggtcatgctagaattagaaaagttgattccaacttgtatttgaatagagtttctgttcgttgctattcgtccaaaaaacatagtggagatagttctccatcgcagaattctgattccactccagaaatgaaagaagagagagatggtttctttgttgttaggaaaggagatctggtgggagtctacaaaaacttgagtgattgccagacccaagtcggatcatcgatatgtgatcctcctgttagtgtgtacaaaggctatgccatgcctaaggacacagaagaatatcttctttcttgtgggcttaaaaatgctctctattctatcagagctgcagatcttaccgaagatctctttgggactctagtaccatgcccttttcagcaaccttcttcttcaaaaagtggaacatctgatcatttgccaaagaagaggccacaggaagcagtgtggtcagaatatgcggatgctgttggatcagcggttgtttcaaatgattccgcaagaaagcatgtcaagttagaacaacaaaagggcgaccaagttctagctctaccatctggtcagcgggcatgtactcttgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="24306" stop="28060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24606" g_stop="24851" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24852" i_stop="25889" i_length="1038">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25890" g_stop="26048" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="405" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26049" i_stop="27241" i_length="1193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27242" g_stop="27322" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="486" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27323" i_stop="27641" i_length="319">
            <donor d_prob="0.714" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27642" g_stop="27740" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="585" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27741" i_stop="27984" i_length="244">
            <donor d_prob="0.709" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27985" g_stop="28007" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="608" r_length="23" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E463226" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24606" e_stop="24851"/>
          <exon e_start="25890" e_stop="26048"/>
          <exon e_start="27242" e_stop="27322"/>
          <exon e_start="27642" e_stop="27740"/>
          <exon e_start="27985" e_stop="28007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCGGTAACTACTGTTATTTCAGCCATTTATTGATCTGTTGTTTGTAGATGACTTTTATTCCCAGGAAAGACATAAAGACAAATACGACTCATCAGAAATTATCCATACATTATGTACAAAATTTACTTTTTCATATTCTTGATGATTAATCATAGGTAGATTCAGCCAAAAAGTCAAAACCTTGTGTAGTAATAACATTACCTTATTTTTTACTCTCTCCGTCCAGTTTACTTGTCCAACATTGACTTGGCACACCCTTAAGGAGCAATAACTAAAATGACAAATTTTACTATATCAACCTTTGAAATAATAAACTTAATTTTTTGGGAAATACACTCTGAAATGATTATAGTTAATAATAAGGGTAAATTAGGAACTTAGTGAGAACTTACCTCTTGGTTTTCCGAACTGCACAAGTAAAAGTGGACATTTATTATTAGTATAGTAGACTAGTAAAAGTGTAAAAAGGGAGTAACTGCAATTTCAGATAAGCTCATTGAGTGACTGACAATTGTTAAGGAATGCTCTAATTGAAATCGGAGGATAGTTTAAGTAATTATGTCTTCTATAGGTTATTCTTTTGCCTCGTTGTATTTGTAAAACAATATCTGTGAATACGAGGATAAAAGAAAGAGGTAAATTGAGTTAATTGTTTACCTTTCCATTAGAAAGTATTTTCCCAAAGTTCTCTGTTCATTTCCAGCAACCATGCCTTCTCCATAATGTTAGGATTTCTCTGTCACTTCATCTGCCTATTGCCAAAACTTGAGAACATGTAGTATGGATAGATAGGTCTTCTGCTGTAATTGGACGATGCTTGTGAGATGACTTCCCAGTGGATTCTTTGACTTCTTGCACATATTATAAGGGGTCAAATCTTGTGAAGCTTTTGTTCATCCTTGGCGCTGCAGGCTTATTTTAGTGAAATCTAGTTATAACAAATAAAATATAAATAAAAAAGGAAGATGTTATCACAATGAAGTTTCCAGACTTGCAATTGATATAATGAGTTGTTTTCTCTTCCTCTTCTGTTTCTGGCAGATATGTGATCCTCCTGTGAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTACCGAAGATCTCTTTGGGACTCTAGTACCATGCCCTTTTCAGGTATAGCTCCTGAGCAGTTCTCTTGGATAAAATTTGTTCCTTTTTCTCAAAGGTGAATATTTGATTTCAAAACTTGTTGTCTATGAGGTTTCATATATGATTTCCTGTCTCTGAGAAGAAGAGGCTTTGAGGCTCCATCATTAGAATGTAATATTTTGCAACTTAATATCAGTTTATATTTTATATTAACCTCAAAGGAATCCCATGGTACTGTTAAAAACAACGACCTAAAGAAAAACTGTAATTGTCATGTTTCCACAGCTGTTCTCCAGAAACAAAACCATGAGGTGCCTGGCTGAATTTGTGTCTTTTTTCTAGAGAGTCTGATCCTGCTTTGGTAAACTTCTTTTGATAAACCGAGGGTCTATCAGAAACAACCTCTCTACCCCATAAAGGTAGGGGTAAGGTCTGCTTTTACATCCTACCCTCCCCAGACCCCATTTGTTGGATTTCATTGGGTATGGTTGTTGTTGACTAGAGAGTCTGAAAACTTTACCTGTTAAATGTCAGAGTTTTCATAATCCAACCACTATGACTCGATTGAAAGAAGTTTTTTCAACTTTAAAACTTGGCTGTACCTTAAAGGTATATCATAGGAATGAAAAACTTCCTGACACACCTATTCTTTAAATAAAGAAAGTTAAAGATTTTAGTACAACACCCTGACCATTTTAATAATGGTACAAGGGAAAACTGCGAGAGCTTCTTAATCATCATGCATGGTATACACACTTCTTTTTGTTTCTTCTATATTGTATATCAAGGATCATCTCTGAATGCTGATACAATATCAGTAGTTTTGTACTTTCTCATTTAATTTTCTACTGCGTATCTTCATGTTCACATTATAGTTAACTGAAAATCGACTAAGGGGGTGTTTGGATTGGCATTTTTAAGCACCTCCAAAAATAAGAGTTTAAAAGCCAAAAGCTTCTTAAAATAAGCCAATCCAAACACCCTCTACAACAATCATTGCCTGTCTTTCTTTGATTCTTCTCTCTGTTTGTCTCTCTGAAAGTTCTTTTGATTTTGCTCTCTCCATGCACTCTTTGCTTTATATGGAATTGCTGGTCAGTTGTATGCTCTGATAGTTATCATAAAGTTGCAGCACCCAGAAAATAATACATGTTTCTTCTTCCCTCATTTTCTTTTATAATTGGTCATACAGCTTATTAGTATTTTATATTTTGCAGCAACCTTCTTCTTCAAAAAGTGGAACATCTGATCATTTGCCAAAGAAGAGGCCACAGGAAGCAATGTGGTCAGAATATGCGGTACGATGGTTTTATATTGTTTTGCAATGGAAAAGTCTACCAGGGTTTGCAGCAATTTCTTTTGAAGTTATTTCCACTTTACTCTATAATCCAAGTTTAATTACTTCTCTAAATCATTTTCCAAGCAGGGTTTGGTTCCTAAGGAACTCAATGTACTTACTTATTATGCTTGCATGCACTTCAATTTATAGATTCCTTGATAGAATTCTCTGCGAGATGCCATAACTAATGGTTTCACGGTTATATTTTTTGCATGATAAATTGTGTTTGGCTCAACACTGTTATGGAAATTATTTTGTTTATTTGCTCCCCTTTGCAGGATGCTGTTGGATCAGCAGTTGTTTCAAATGATTCCGCAAGAAAGCATGTCAAGTTAGAGCAACAAAAGGGCGACCAAATTCTAGCTCTTCCATCTGGTGTGAGTGTCTGTTATGATGATGGCTAATCTTTAAGTATAAATAATTTCTTTATGTGTAGTTCACAAAGCGAATGAATTTATATTTTATAATTAATGGTAGGTTGCCAGGAGAAAAATCCTATTTTTTTTACAGATTAATGGTGTAAACTTAACTCTGTGTGGCAAACTATCAGGCTAGGATCTTATTATATTTTCTTGTTGGTTTGTGTTCTGGTTCAAAGAATCTGATAGTTGTTATCCTTAGCAGCGGTCATGTACTCTTGAATT</genome_strand>
        <mrna_strand>CTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTAGAAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTATTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGATTCCACTCCAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTGGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGATCCTCCTGTTAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTACCGAAGATCTCTTTGGGACTCTAGTACCATGCCCTTTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTTCTTCTTCAAAAAGTGGAACATCTGATCATTTGCCAAAGAAGAGGCCACAGGAAGCAGTGTGGTCAGAATATGCG...............................................................................................................................................................................................................................................................................................................................GATGCTGTTGGATCAGCGGTTGTTTCAAATGATTCCGCAAGAAAGCATGTCAAGTTAGAACAACAAAAGGGCGACCAAGTTCTAGCTCTACCATCTGGT....................................................................................................................................................................................................................................................CAGCGGGCATGTACTCTTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345176" ref_strand="+" ref_description="SGN-E345176 [cTOF-13-A5]">
      <seq>cttttcagcaaccttcttcttcaaaaagtggaacatctgatcatttgccaaagaagaggccacaggaagcaatgtggtcagaatatgcggatgctgttggatcagcagttgtttcaaatgattccgcaagaaagcatgtcaagttagagcaacaaaagggcgaccaaattctagctcttccatctggtcagcggtcatgtactcttgaattcgatggtgcttcaaagggaaatcctggacaagctggtgcaggagctgttatacgggcggatgatggaagcatgaccctcaggctacgtgaaggtttaggagtggcaacaagcaatcatgctgaatacagggcatttattttgggtttgaaacatgctcttagagaagggtttactagtattcgtgttcaaggtgactccaagcttgtttgtatgcagatccaaggtctgtggaaggttaaaaatcaaaacatcgccatggtgtttgagcaggcaaaacaattgaaggaaaggttcctttctttccgcatcattcatgtccttcgggaatcaaactctgatgcagatcagcaagcaaacttggctgttgaacttccagagggtcaaattcaagaagaggtagagaagtaacaaaacccactgatggttttcgcgtacattacagacaaggatttatttatacaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="26934" stop="29582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27234" g_stop="27322" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27323" i_stop="27641" i_length="319">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27642" g_stop="27740" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="188" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27741" i_stop="27984" i_length="244">
            <donor d_prob="0.709" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27985" g_stop="28080" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="284" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28081" i_stop="28157" i_length="77">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28158" g_stop="28301" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="428" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28302" i_stop="28769" i_length="468">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28770" g_stop="28877" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="536" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28878" i_stop="29055" i_length="178">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29056" g_stop="29107" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="588" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29108" i_stop="29192" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29193" g_stop="29282" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="677" r_length="89" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E345176" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27234" e_stop="27322"/>
          <exon e_start="27642" e_stop="27740"/>
          <exon e_start="27985" e_stop="28080"/>
          <exon e_start="28158" e_stop="28301"/>
          <exon e_start="28770" e_stop="28877"/>
          <exon e_start="29056" e_stop="29107"/>
          <exon e_start="29193" e_stop="29282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCAGCAACCTTCTTCTTCAAAAAGTGGAACATCTGATCATTTGCCAAAGAAGAGGCCACAGGAAGCAATGTGGTCAGAATATGCGGTACGATGGTTTTATATTGTTTTGCAATGGAAAAGTCTACCAGGGTTTGCAGCAATTTCTTTTGAAGTTATTTCCACTTTACTCTATAATCCAAGTTTAATTACTTCTCTAAATCATTTTCCAAGCAGGGTTTGGTTCCTAAGGAACTCAATGTACTTACTTATTATGCTTGCATGCACTTCAATTTATAGATTCCTTGATAGAATTCTCTGCGAGATGCCATAACTAATGGTTTCACGGTTATATTTTTTGCATGATAAATTGTGTTTGGCTCAACACTGTTATGGAAATTATTTTGTTTATTTGCTCCCCTTTGCAGGATGCTGTTGGATCAGCAGTTGTTTCAAATGATTCCGCAAGAAAGCATGTCAAGTTAGAGCAACAAAAGGGCGACCAAATTCTAGCTCTTCCATCTGGTGTGAGTGTCTGTTATGATGATGGCTAATCTTTAAGTATAAATAATTTCTTTATGTGTAGTTCACAAAGCGAATGAATTTATATTTTATAATTAATGGTAGGTTGCCAGGAGAAAAATCCTATTTTTTTTACAGATTAATGGTGTAAACTTAACTCTGTGTGGCAAACTATCAGGCTAGGATCTTATTATATTTTCTTGTTGGTTTGTGTTCTGGTTCAAAGAATCTGATAGTTGTTATCCTTAGCAGCGGTCATGTACTCTTGAATTCGATGGTGCTTCAAAGGGAAATCCTGGACAAGCTGGTGCAGGAGCTGTTATACGGGCGGATGATGGAAGCATGGTAGCGATCACCAAATTTGGAATTTTTCTTTTGCTTTTGGTTCTTCATACTTGTACTTACAACCTTCCTTCTAATAGACCCTCAGGCTACGTGAAGGTTTAGGAGTGGCAACAAGCAATCATGCTGAATACAGGGCATTTATTTTGGGTTTGAAACATGCTCTTAGAGAAGGGTTTACTAGTATTCGTGTTCAAGGTGACTCCAAGCTTGTTTGTATGCAGGTTTGTTTTTTATATCATGTGCTCAGTCGCATATTTCTCCTTTCCCTTGTGTGAGATTATTCCTCTATAGTACACTGCAGTATACTTGTCACATTCTGTTGACTGTTTTAAGTGTGATCTAGTGGCCTGTGAAGTTGGTTGATAACCATATGAAAAATTCAGAAGAGGTTGATTCCTGATACTGTGAAAAAGGTCAAACCTAGAAAAATTCTCGTTTTATCTCAGTGGAAAATAATTGACTAGCTACAAGGATCTGATGAGAAGTTCTTTTGCTCTATATATTTGCTCGGATTCTCCAAAAAATTTGCCACCTCTCTGTCGGTTCCTCCAAAAATGCACTACTTTTGGAGGATCCAACATGCACTCTTCGAAACTCTAGAAGAGTCCAAGCAACATAGCTTTTGCTTATTAGCTGTCCTCTATTCTCAGTTTATTTGACTTTTAATCAGATTGTAATTTGCCAAACAGATCCAAGGTCTGTGGAAGGTTAAAAATCAAAACATCGCCATGGTGTTTGAGCAGGCAAAACAATTGAAGGAAAGGTTCCTTTCTTTCCGCATCATTCATGTCCTTCGGGTAATACTGTAACATCCTTTCTCTTCTTTCATTCACACAACGCAACTCATCAAGACATGATCTCACACTCTCACAAGCCTGTTCAATAATAGCGTAAAAACTACATATATATTTACCTATCTTCTCCTTGACGATTTTTGTAGAAATTTGACATGTCTCTTACTCTTTTGTTTTATAGGAATCAAACTCTGATGCAGATCAGCAAGCAAACTTGGCTGTTGAACTTCCAGGTAAAGAGTTACTCCCTTGCACACTCGGAATCTGTCATTGTTATAGGTCATCGAAGTTATTATCTAACTACGTCTATCAATACAGAGGGTCAAATTCAAGAGGAGGTAGAGAAGTAACAAAACCACACTGATGGTTTTCGCGTACATTACAGACAAGGATTTATTTATACACCCA</genome_strand>
        <mrna_strand>CTTTTCAGCAACCTTCTTCTTCAAAAAGTGGAACATCTGATCATTTGCCAAAGAAGAGGCCACAGGAAGCAATGTGGTCAGAATATGCG...............................................................................................................................................................................................................................................................................................................................GATGCTGTTGGATCAGCAGTTGTTTCAAATGATTCCGCAAGAAAGCATGTCAAGTTAGAGCAACAAAAGGGCGACCAAATTCTAGCTCTTCCATCTGGT....................................................................................................................................................................................................................................................CAGCGGTCATGTACTCTTGAATTCGATGGTGCTTCAAAGGGAAATCCTGGACAAGCTGGTGCAGGAGCTGTTATACGGGCGGATGATGGAAGCATG.............................................................................ACCCTCAGGCTACGTGAAGGTTTAGGAGTGGCAACAAGCAATCATGCTGAATACAGGGCATTTATTTTGGGTTTGAAACATGCTCTTAGAGAAGGGTTTACTAGTATTCGTGTTCAAGGTGACTCCAAGCTTGTTTGTATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGGTCTGTGGAAGGTTAAAAATCAAAACATCGCCATGGTGTTTGAGCAGGCAAAACAATTGAAGGAAAGGTTCCTTTCTTTCCGCATCATTCATGTCCTTCGG..................................................................................................................................................................................GAATCAAACTCTGATGCAGATCAGCAAGCAAACTTGGCTGTTGAACTTCCAG.....................................................................................AGGGTCAAATTCAAGAAGAGGTAGAGAAGTAACAAAACC-CACTGATGGTTTTCGCGTACATTACAGACAAGGATTTATTTATACACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269025" ref_strand="+" ref_description="SGN-E269025 [cLEI-16-D1]">
      <seq>aggctacgtgaaggtttaggagtggcaacaagcaatcatgctgaatacagggcatttattttgggtttgaaacatgctcttagagaagggtttactagtattcgtgttcaaggtgactccaagcttgtttgtatgcagatccaaggtctgtggaaggttaaaaatcaaaacatcgccatggtgtttgagcaggcaaaacaattgaaggaaaggttcctttctttccgcatcattcatgtccttcgggaatcaaactctgatgcagatcagcaagcaaacttggctgttgaacttccagagggtcaaattcaagaggaggtagagaagtaacaaaaccacactgatggttttcgcgtacattacagacaaggatttatttatacacccaatttgaaggtttgtgctatgaagccagtgaatcattcgttgatttagagtcagtactctttaagattaatgttattgcaattaggttatgtaaatgtatttggaacaaatgttatcattgttacctttaaattctcagcaatggctctggggaacgtgctctacgttccccagatacccgtaaaagatcatgaaacttattgatacaaatcaatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="27864" stop="29800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28164" g_stop="28301" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28302" i_stop="28769" i_length="468">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28770" g_stop="28877" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="246" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28878" i_stop="29055" i_length="178">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29056" g_stop="29107" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="298" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29108" i_stop="29192" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29193" g_stop="29500" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="606" r_length="308" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E269025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28164" e_stop="28301"/>
          <exon e_start="28770" e_stop="28877"/>
          <exon e_start="29056" e_stop="29107"/>
          <exon e_start="29193" e_stop="29500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTACGTGAAGGTTTAGGAGTGGCAACAAGCAATCATGCTGAATACAGGGCATTTATTTTGGGTTTGAAACATGCTCTTAGAGAAGGGTTTACTAGTATTCGTGTTCAAGGTGACTCCAAGCTTGTTTGTATGCAGGTTTGTTTTTTATATCATGTGCTCAGTCGCATATTTCTCCTTTCCCTTGTGTGAGATTATTCCTCTATAGTACACTGCAGTATACTTGTCACATTCTGTTGACTGTTTTAAGTGTGATCTAGTGGCCTGTGAAGTTGGTTGATAACCATATGAAAAATTCAGAAGAGGTTGATTCCTGATACTGTGAAAAAGGTCAAACCTAGAAAAATTCTCGTTTTATCTCAGTGGAAAATAATTGACTAGCTACAAGGATCTGATGAGAAGTTCTTTTGCTCTATATATTTGCTCGGATTCTCCAAAAAATTTGCCACCTCTCTGTCGGTTCCTCCAAAAATGCACTACTTTTGGAGGATCCAACATGCACTCTTCGAAACTCTAGAAGAGTCCAAGCAACATAGCTTTTGCTTATTAGCTGTCCTCTATTCTCAGTTTATTTGACTTTTAATCAGATTGTAATTTGCCAAACAGATCCAAGGTCTGTGGAAGGTTAAAAATCAAAACATCGCCATGGTGTTTGAGCAGGCAAAACAATTGAAGGAAAGGTTCCTTTCTTTCCGCATCATTCATGTCCTTCGGGTAATACTGTAACATCCTTTCTCTTCTTTCATTCACACAACGCAACTCATCAAGACATGATCTCACACTCTCACAAGCCTGTTCAATAATAGCGTAAAAACTACATATATATTTACCTATCTTCTCCTTGACGATTTTTGTAGAAATTTGACATGTCTCTTACTCTTTTGTTTTATAGGAATCAAACTCTGATGCAGATCAGCAAGCAAACTTGGCTGTTGAACTTCCAGGTAAAGAGTTACTCCCTTGCACACTCGGAATCTGTCATTGTTATAGGTCATCGAAGTTATTATCTAACTACGTCTATCAATACAGAGGGTCAAATTCAAGAGGAGGTAGAGAAGTAACAAAACCACACTGATGGTTTTCGCGTACATTACAGACAAGGATTTATTTATACACCCAATTTGAAGGTTTGTGCTATGAAGCCAGTGAATCATTCGTTGATTTAGAGTCAGTACTCTTTAAGATTAATGTTATTGCAATTAGGTTATGTAAATGTATTTGGAACAAATGTTATCATTGTTACCTTTAAATTCTCAGCAATGGCTCTGGGGAACGTGCTCTACGTTCCCCAGATACCCGTAAAAGATCATGAAACTTATTGATACAAATCAATGTCT</genome_strand>
        <mrna_strand>AGGCTACGTGAAGGTTTAGGAGTGGCAACAAGCAATCATGCTGAATACAGGGCATTTATTTTGGGTTTGAAACATGCTCTTAGAGAAGGGTTTACTAGTATTCGTGTTCAAGGTGACTCCAAGCTTGTTTGTATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGGTCTGTGGAAGGTTAAAAATCAAAACATCGCCATGGTGTTTGAGCAGGCAAAACAATTGAAGGAAAGGTTCCTTTCTTTCCGCATCATTCATGTCCTTCGG..................................................................................................................................................................................GAATCAAACTCTGATGCAGATCAGCAAGCAAACTTGGCTGTTGAACTTCCAG.....................................................................................AGGGTCAAATTCAAGAGGAGGTAGAGAAGTAACAAAACCACACTGATGGTTTTCGCGTACATTACAGACAAGGATTTATTTATACACCCAATTTGAAGGTTTGTGCTATGAAGCCAGTGAATCATTCGTTGATTTAGAGTCAGTACTCTTTAAGATTAATGTTATTGCAATTAGGTTATGTAAATGTATTTGGAACAAATGTTATCATTGTTACCTTTAAATTCTCAGCAATGGCTCTGGGGAACGTGCTCTACGTTCCCCAGATACCCGTAAAAGATCATGAAACTTATTGATACAAATCAATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220042" ref_strand="+" ref_description="SGN-E220042 [cLEL-24-K11](-)">
      <seq>gttaaaaatcaaaacatcgccatggtgtttagcaggcaaaacaattaaggaaaggttcctttctttccgcatcattcatgtccttcgggaatcaaactgttatgcagatcagcaagcaaacttggctgttgaacttccagagggtcaaattcaagaggaggtagagaagtaacaaaaccacactgatggttttcgcgtacattacagacaaggatttatttatacacccaatttgaaggtttgtgctatgaagccagtgaatcattcgttgatttagagtcagtactctttaagattaatgttattgcaattaggttatgtaaatgtatttggaacaaatgttatcattgttacctttaaattctcagcaatggctctggggaacgtgctctacgttccccagatacccgtaaaagatcatgaaacttattgatacaaatcaatgtctctgtcatttgtaagattattatatgttatgtatctaacaatgccagcaaataagttgtagactcattgagctgtgataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="28488" stop="29881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28788" g_stop="28877" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28878" i_stop="29055" i_length="178">
            <donor d_prob="0.862" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29056" g_stop="29107" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="140" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29108" i_stop="29192" i_length="85">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29193" g_stop="29580" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="527" r_length="387" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="543"/>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E220042" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28788" e_stop="28877"/>
          <exon e_start="29056" e_stop="29107"/>
          <exon e_start="29193" e_stop="29580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAAAATCAAAACATCGCCATGGTGTTTGAGCAGGCAAAACAATTGAAGGAAAGGTTCCTTTCTTTCCGCATCATTCATGTCCTTCGGGTAATACTGTAACATCCTTTCTCTTCTTTCATTCACACAACGCAACTCATCAAGACATGATCTCACACTCTCACAAGCCTGTTCAATAATAGCGTAAAAACTACATATATATTTACCTATCTTCTCCTTGACGATTTTTGTAGAAATTTGACATGTCTCTTACTCTTTTGTTTTATAGGAATCAAACTCTGATGCAGATCAGCAAGCAAACTTGGCTGTTGAACTTCCAGGTAAAGAGTTACTCCCTTGCACACTCGGAATCTGTCATTGTTATAGGTCATCGAAGTTATTATCTAACTACGTCTATCAATACAGAGGGTCAAATTCAAGAGGAGGTAGAGAAGTAACAAAACCACACTGATGGTTTTCGCGTACATTACAGACAAGGATTTATTTATACACCCAATTTGAAGGTTTGTGCTATGAAGCCAGTGAATCATTCGTTGATTTAGAGTCAGTACTCTTTAAGATTAATGTTATTGCAATTAGGTTATGTAAATGTATTTGGAACAAATGTTATCATTGTTACCTTTAAATTCTCAGCAATGGCTCTGGGGAACGTGCTCTACGTTCCCCAGATACCCGTAAAAGATCATGAAACTTATTGATACAAATCAATGTCTCTGTCATTTGTAAGATTATTATATGTGTATGTATCTAACAATGCCAGCAAATAAGTTGTAGACTCATTGAGCTGTGATAC</genome_strand>
        <mrna_strand>GTTAAAAATCAAAACATCGCCATGGTGTTT-AGCAGGCAAAACAATT-AAGGAAAGGTTCCTTTCTTTCCGCATCATTCATGTCCTTCGG..................................................................................................................................................................................GAATCAAACTGTTATGCAGATCAGCAAGCAAACTTGGCTGTTGAACTTCCAG.....................................................................................AGGGTCAAATTCAAGAGGAGGTAGAGAAGTAACAAAACCACACTGATGGTTTTCGCGTACATTACAGACAAGGATTTATTTATACACCCAATTTGAAGGTTTGTGCTATGAAGCCAGTGAATCATTCGTTGATTTAGAGTCAGTACTCTTTAAGATTAATGTTATTGCAATTAGGTTATGTAAATGTATTTGGAACAAATGTTATCATTGTTACCTTTAAATTCTCAGCAATGGCTCTGGGGAACGTGCTCTACGTTCCCCAGATACCCGTAAAAGATCATGAAACTTATTGATACAAATCAATGTCTCTGTCATTTGTAAGATTATTATATGT-TATGTATCTAACAATGCCAGCAAATAAGTTGTAGACTCATTGAGCTGTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219706" ref_strand="+" ref_description="SGN-E219706 [cLEL-24-K11](-)">
      <seq>ttatttatacacccaatttaagagtttgtgctatgaagccagtgaatcattcgttgatttagagtcagtactctttaagattaatgttattgcaattaggttatgtaaatgtatttggaacaaatgttatcattgttacctttaaattctcagcaatggctctggggaacgtgctctacgttccccagatacccgtaaaagatcatgaaacttattgatacaaatcaatgtctctgtcatttgtaagattattatatgttatgtatctaacaatgccagcaaataagttgtagactcattgagctgtgataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="28968" stop="29881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29268" g_stop="29580" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="313" polyA_stop="328"/>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E219706" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29268" e_stop="29580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTATACACCCAATTTGAAGGTTTGTGCTATGAAGCCAGTGAATCATTCGTTGATTTAGAGTCAGTACTCTTTAAGATTAATGTTATTGCAATTAGGTTATGTAAATGTATTTGGAACAAATGTTATCATTGTTACCTTTAAATTCTCAGCAATGGCTCTGGGGAACGTGCTCTACGTTCCCCAGATACCCGTAAAAGATCATGAAACTTATTGATACAAATCAATGTCTCTGTCATTTGTAAGATTATTATATGTGTATGTATCTAACAATGCCAGCAAATAAGTTGTAGACTCATTGAGCTGTGATAC</genome_strand>
        <mrna_strand>TTATTTATACACCCAATTTAAGAGTTTGTGCTATGAAGCCAGTGAATCATTCGTTGATTTAGAGTCAGTACTCTTTAAGATTAATGTTATTGCAATTAGGTTATGTAAATGTATTTGGAACAAATGTTATCATTGTTACCTTTAAATTCTCAGCAATGGCTCTGGGGAACGTGCTCTACGTTCCCCAGATACCCGTAAAAGATCATGAAACTTATTGATACAAATCAATGTCTCTGTCATTTGTAAGATTATTATATGT-TATGTATCTAACAATGCCAGCAAATAAGTTGTAGACTCATTGAGCTGTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215061" ref_strand="+" ref_description="SGN-E215061 [cLEC-78-I14]">
      <seq>agattttgatgattaggagaggtttacggttactggctaccggaaatttgaactcctcgccgttgatttaccggcggcattcgttttactcgacgtcgtttttctctagttcgtctcggttgaatgctaactttgccgcagatgatttgctgctcggcgatcaattagctaccttggcttccaaagcggagacgtctcagaatctacttcagcctggtgtcgttgtctatgacggcgtttgtcatctctgtcacaacgctgcactgagggttctagctcacttgccattaccttactctgcgctgagttacttcatgattgtacctactcctttaagggatgctgtttacgatcatgttgccaaggagaggtataaatggtttgggaagagtgatgactgtttagttctccgggaacaagacttgcttgatcgcttcattgatagggaagagttgcttgaacgtagccgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="30012" stop="32635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30312" g_stop="30569" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30570" i_stop="32121" i_length="1552">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32122" g_stop="32335" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="472" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E215061" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30312" e_stop="30569"/>
          <exon e_start="32122" e_stop="32335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTGATGATTAGGAGAGGTTTACGGTTACTGGCTACCGGAAATTTGAACTCCTCGCCGTTGATTTACCGGCGGCATTCGTTTTACTCGACGTCGTTTTTCTCTAGTTCGTCTCGGTTGAATGCTAACTTTGCCGCAGATGATTTGCTGCTCGGCGATCAATTAGCTACCTTGGCTTCCAAAGCGGAGACGTCTCAGAATCTACTTCAGCCTGGTGTCGTTGTCTATGACGGCGTTTGTCATCTCTGTCACAACGGTATTAATATTATCATCTTCCTAGTGTATGTTTATTCGTGGTTTTAGCTGTATATTGCATTTATGCTTTGATTTCTGACTATTACTGTTTATCGGAGGCTATAAATGAGTACAGGAGTGCGGTTATTGTATAGTTTTTGTGTTTGTAGTTACATCTTATCAAATTGAATAGGATTTTAAGATTTATCACGATTTTTCACATAAATTAGTTGGCAGGAAGATGGTAGGAGCTACCATTTTGAGAGAACACAAGCAAGGTAGCTTGTTTACTGTCCTAGTAGTGTATTTTGGCAAGCATTTAGAAAGCGAGAATCCACTTTTGGGCGAAGTTTACTTGTACAAACCGGCAAACAGTAAGTTTGTCTATAAGAGAAATCTTCATTCTCATTGCCTCAACTAGTTTGGGATTGAAGCGTAGTTGCTTGACTGTCTCAATTGGATGATGGGGGAATGGTTATTCTTTAGGTCTAAACTACCGTGAGGGGTACATCCATAATTGGTCGTCTCAGTTTATATGAGCTTCTTGCCATTTTATATGTAGGTGTGAAATGGGTGATTAAAGCTGACAGGGATAAGAAAATCAAGTTCTGTTGCTTGCAGTCAAAGGCTGCTGAACCTTACATGAGTGTGTGTGATCTTGATCGAGATGACGTTCGTCGTCGCTTCTTATTCATTGAAGGCCCAGGTTTATACCATCAAGGCTCCACTGGTTAGAAACCATTGCCCTGTATTACTGTATCAACTTGACTACCTCTTTATTGTGGTTTCACAAATTATTGCCATTATATAAATATTTTTTCTTATTTTGTATGTCCAAGTAGCGTTTAACATTTCCAACGAGAGCCTGGCTGACTTGTAAATGCAGTGCATCTGATTACTCCCGAGTTGTCCTTCCATGAACTACATAATCATTCTTATTTTGAAGACAAGAATTGTTTGCAAATATACTATGGGCTATGGCAGATAGCTATGATAAATTTACTTTATGCAGTTTGCTTTACGTAGACCTCAAGATTCTGGTAATTGGATATTGATGGGTATTGGCTTGAGCTAATTGCTAGTGTAAAGAGATATGTGCTAACTACTACTGTCATGACAGCTTTACCCCCATGAATTCAGATACGGTTGCGCTCAATGTGCTTCCAGCTGATATAATTGGAATTGTAATTCATAGTTTTACCCATTGTTTCAAGGTGCATATAATTAAACAGATTTGGAGCATTTAGGTTTATTTGAGCTGGTATTCTAATCAAATCGCAAAGGAATCAACTATTGGCTAGATCTCCCCCACCCCTTTATTTTTATGTTTAATTTTTTTTATGTTCTGTAATGAAAAAGTTATCATGATCCATTGAAAGTGGAATACCGAGTTTCATAGACTGCTTGCTTTCTGTACGTTGAGATCCAGTATAGCAGCCTTTCTGCAGATCCTTCCTATTCTTGCACAATTAAGCATACTCAGTATGTTGCTTTTGTTTTTTCCTTGCTAGAATTGGAATGGTAATAGTTGGCTGTGGAAATCACAAGTCTAATATATCTGATTTTTGCTGCAGCTGCACTGAGGGTTCTAGCTCACTTGCCATTACCTTACTCTGCGCTGAGTTACTTCATGATTGTACCTACTCCTTTAAGGGATGCTGTTTACGATCATGTTGCCAAGGAGAGGTATAAATGGTTTGGGAAGAGTGATGACTGTTTAGTTCTCCGGGAACAAGACTTGCTTGATCGCTTCATTGATAGGGAAGAGTTGCTTGAACGTAGCCGATC</genome_strand>
        <mrna_strand>AGATTTTGATGATTAGGAGAGGTTTACGGTTACTGGCTACCGGAAATTTGAACTCCTCGCCGTTGATTTACCGGCGGCATTCGTTTTACTCGACGTCGTTTTTCTCTAGTTCGTCTCGGTTGAATGCTAACTTTGCCGCAGATGATTTGCTGCTCGGCGATCAATTAGCTACCTTGGCTTCCAAAGCGGAGACGTCTCAGAATCTACTTCAGCCTGGTGTCGTTGTCTATGACGGCGTTTGTCATCTCTGTCACAACG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCACTGAGGGTTCTAGCTCACTTGCCATTACCTTACTCTGCGCTGAGTTACTTCATGATTGTACCTACTCCTTTAAGGGATGCTGTTTACGATCATGTTGCCAAGGAGAGGTATAAATGGTTTGGGAAGAGTGATGACTGTTTAGTTCTCCGGGAACAAGACTTGCTTGATCGCTTCATTGATAGGGAAGAGTTGCTTGAACGTAGCCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228782" ref_strand="+" ref_description="SGN-E228782 [cLEL-29-I24](-)">
      <seq>tatggtggtccaggaacattactggttgttccattcatcgatatggctgataccataaacgacagaggtttaccaggaggaccacaagctgcacgcgntgcagtcaaatgggcacaaagtcatgttgacaacgattggaaagaatggaatagtggcaagaaaaagtaacttatcaaccaagatccagaaggaatggaatagtggcaagaaaagatgatccaacaaccaagatctgttgccagaagttttgatgcatgatgctatttttgtgttggtaactccctttacagtagtatgtgatagtataggactagaaattaaaggactatgtagagaaactagtcacaaaagtttctcattctcacgatggcactttgttatattaatgatgaaaccaaacgcaagcattcaacaggcaaaaggttcagatgtacttttcgtcaatgacaaaaaacgaaggcattcccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="33234" stop="32167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32934" g_stop="32467" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="469" polyA_stop="486"/>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E228782" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32934" e_stop="32467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTGGTCCAGGAACATTACTGGTTGTTCCATTCATCGATATGGCTGATACCATAAACGACAGAGGTTTACCAGGAGGACCACAAGCTGCACGCGCTGCAGTCAAATGGGCACAAAGTCATGTTGACAACGATTGGAAAGAATGGAATAGTGGCAAGAAAAAGTAACTTATCAACCAAGATCCAGAAGGAATGGAATAGTGGCAAGAAAAGATGATCCAACAACCAAGATCTGTTGCCAGAAGTTTTGATGCATGATGCTATTTTTGTGTTGGTAACTCCCTTTACAGTAGTATGTGATAGTATAGGACTAGAAATTAAAGGACTATGTAGAGAAACTAGTCACAAAAGTTTCTCATTCTCACGATGGCACTTTGTTATATTAATGATGAAACCAAACGCAAGCATTCAACAGGCAAAAGGTTCAGATGTACTTTTCGTCAATGACAAAAAACGAAGGCATTCCCA</genome_strand>
        <mrna_strand>TATGGTGGTCCAGGAACATTACTGGTTGTTCCATTCATCGATATGGCTGATACCATAAACGACAGAGGTTTACCAGGAGGACCACAAGCTGCACGCGNTGCAGTCAAATGGGCACAAAGTCATGTTGACAACGATTGGAAAGAATGGAATAGTGGCAAGAAAAAGTAACTTATCAACCAAGATCCAGAAGGAATGGAATAGTGGCAAGAAAAGATGATCCAACAACCAAGATCTGTTGCCAGAAGTTTTGATGCATGATGCTATTTTTGTGTTGGTAACTCCCTTTACAGTAGTATGTGATAGTATAGGACTAGAAATTAAAGGACTATGTAGAGAAACTAGTCACAAAAGTTTCTCATTCTCACGATGGCACTTTGTTATATTAATGATGAAACCAAACGCAAGCATTCAACAGGCAAAAGGTTCAGATGTACTTTTCGTCAATGACAAAAAACGAAGGCATTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229070" ref_strand="+" ref_description="SGN-E229070 [cLEL-29-I24](-)">
      <seq>ctgataccataaacgacagaggtttaccaggaggaccacaagctgcacgcgctgcagtcaaatgggcacaaagtcatgttgacaacgattggaaagaatggaatagtggcaagaaaaagtaacttatcaaccaagatccagaaggaatggaatagtggcaagaaaagatgatccaacaaccaagatctgttgccagaagttttgatgcatgatgctatttttgtgttggtaactccctttacagtagtatgtgatagtataggactagaaattaaaggactatgtagagaaactagtcacaaaagtttctcattctcacgatggcactttgttatattaatgatgaaaccaaacgcaagcattcaacaggcaaaaggttcagatgtacttttcgtcaatgacaaaaaacgaaggcattcccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="33188" stop="32167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32888" g_stop="32467" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="423" polyA_stop="440"/>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E229070" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32888" e_stop="32467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATACCATAAACGACAGAGGTTTACCAGGAGGACCACAAGCTGCACGCGCTGCAGTCAAATGGGCACAAAGTCATGTTGACAACGATTGGAAAGAATGGAATAGTGGCAAGAAAAAGTAACTTATCAACCAAGATCCAGAAGGAATGGAATAGTGGCAAGAAAAGATGATCCAACAACCAAGATCTGTTGCCAGAAGTTTTGATGCATGATGCTATTTTTGTGTTGGTAACTCCCTTTACAGTAGTATGTGATAGTATAGGACTAGAAATTAAAGGACTATGTAGAGAAACTAGTCACAAAAGTTTCTCATTCTCACGATGGCACTTTGTTATATTAATGATGAAACCAAACGCAAGCATTCAACAGGCAAAAGGTTCAGATGTACTTTTCGTCAATGACAAAAAACGAAGGCATTCCCA</genome_strand>
        <mrna_strand>CTGATACCATAAACGACAGAGGTTTACCAGGAGGACCACAAGCTGCACGCGCTGCAGTCAAATGGGCACAAAGTCATGTTGACAACGATTGGAAAGAATGGAATAGTGGCAAGAAAAAGTAACTTATCAACCAAGATCCAGAAGGAATGGAATAGTGGCAAGAAAAGATGATCCAACAACCAAGATCTGTTGCCAGAAGTTTTGATGCATGATGCTATTTTTGTGTTGGTAACTCCCTTTACAGTAGTATGTGATAGTATAGGACTAGAAATTAAAGGACTATGTAGAGAAACTAGTCACAAAAGTTTCTCATTCTCACGATGGCACTTTGTTATATTAATGATGAAACCAAACGCAAGCATTCAACAGGCAAAAGGTTCAGATGTACTTTTCGTCAATGACAAAAAACGAAGGCATTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414313" ref_strand="+" ref_description="SGN-E414313 [STM-19-G4]">
      <seq>gtttaactctggatgctaaaatggcttcggctatttcactcgtctcttcatccattcttctttcttcttcgtcttcgccctctgtttatcttccaatttcagtcaattgggtttcatcttcttcatcttacacatgtatttccacttgggtttcttccaaacgatgcagtagtagaaacccacaaaaccttatttgcagagctgctgaatacaaattccctgaccccattcctgagtttgctgatgctgaaacggagaagttcagagatcatttgcttaagaaacttccaaagaaggatgtctatggagattctgttgaagaaattgttggaatctgcactgagatcctcaacgagttcttacatgctgagtatggtggtccaggaacattactggttgttccattcatcgatatggcagataccataaacgacaggggtttaccaggaggaccacaggctgcgcgtgctgcaatcaaatgggcacaaagtcatgttgacaacgattggaaggaatggaatagtggtaagaaaaaataatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="34698" stop="32467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34398" g_stop="34157" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.839"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34156" i_stop="34038" i_length="119">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34037" g_stop="33942" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="344" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33941" i_stop="32962" i_length="980">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32961" g_stop="32765" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="541" r_length="197" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E414313" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E414313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34398" e_stop="34157"/>
          <exon e_start="34037" e_stop="33942"/>
          <exon e_start="32961" e_stop="32765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAACTCTGGGTGCTAAAATGGCTTCGGCTATTTCACTTGTCTCTTCATCCATTCTCCTTTCTTCTTCGTCTTCGCCCTCTGTTTATCTTCCAATCTCAAATTCAGTCAGTTGGGTTTCATCTTCTTCATCATACAGATGTATTTCCTCTTGGGTTTCTCCCAAACGATGC------AG------ACAAAACCTTATTTGCAGAGCTGCTGAATACAAATTCCCTGACCCCATTCCTGAGTTTGCTGATGCTGTAAGTTTTCTTCGTCGTCGTCGTCGTCTTTGTAATCTATTTTGGTTCATTGGGTCTCTTTCATTTCACCCGTTTGTTAAAAAAGTTCGGATTTTTATTGGGTTTTGTTGGGGTTTTAGGAAACAGAGAAGTTCAGAGATCATTTGCTTAAGAAACTTCCAAAGAAGGATATCTATGGAGATTCTGTTGAAGAAATTGTTGGAATCTGCACTGAGGTACTTCCATTTTATTGTTTTGTTTCAGCCAGTTTGTGCGTAGCTCAACTAATTTTACTCTACTACAACATACCCAGTGTAATCGCGCACAAGTGGGGTACAATTAACGAAGGATTAACAAATTAATCGAACTAACATGGAGTAGTAGAAATGAAGTTTAAAATGCCATGTAAATATTAGAGCTAAGACTACTAAAATAAAATGAACATGAGAAGAGAGATTTGCTTCCTGATTCTCCCTCATAAAACGTGCGGAACACGGTGAATTTTCGTCAAGGGTGATCATGATTTGATACGTATGTACAAAGTATATTTTTTTGATGAAGGGTGTTCAGCTGGCCATCATTCGTTCTATATACTCAGCCATTGCGTGCATTTACTCGTGTCCACCAAAATTTGAACAAATGAGAGCATAAAACAAAACTACCTTTATTTGCCGTAATATTTACTTCTCTGCTGGCTTTGTTGTGATGGTAATTCAAGAATCCTGCGTTGCAGCTCGAAAAATGTATATGCTTTAGATGACATTATGTAGAGTGATTGTGTGAGACGTAATGGTATGTTCATTCTGCAGGATTCCGATATCAATCAATGTGTTTCTCTTTAGCGGTTAGATAATCACAGTATTTATGAGTTAATCACCCCATGTAATAGGAGTTATTGAATAGCTTAAAGTCTATGGATTTTAATGAAATAAATCTAGGACCCTCTAGGCATGTTTTGCAATTGATACTTCAGTTATGTGTGCCACCATTTGGATCTAATTAATAGAGGATTCACATAGCGCCAACTTAGGATTGAGTTTGGGTTGATTCATTGATATGATTTCCTAAGTACTTGCACAAATGTCTTTTACCTTGGCAAAGATGCTTTTTACTCAGGTTTTCAAGTTTGAATTTGTAATAGTCTTGCTTGAAGTTGCATTTTCCAGGAGGTTTACTGAAATGTAAGTAACATTGGTTCAAATAATTTCTTCGACAGATCCTCAACGAGTTCTTACACGCTGAGTATGGTGGTCCAGGAACATTACTGGTTGTTCCATTCATCGATATGGCTGATACCATAAACGACAGAGGTTTACCAGGAGGACCACAAGCTGCACGCGCTGCAGTCAAATGGGCACAAAGTCATGTTGACAACGATTGGAAAGAATGGAATAGTGGCAAGAAAAAGTAACT</genome_strand>
        <mrna_strand>GTTTAACTCTGGATGCTAAAATGGCTTCGGCTATTTCACTCGTCTCTTCATCCATTCTTCTTTCTTCTTCGTCTTCGCCCTCTGTTTATCTTCCAA--T----TTCAGTCAATTGGGTTTCATCTTCTTCATCTTACACATGTATTTCCACTTGGGTTTCTTCCAAACGATGCAGTAGTAGAAACCCACAAAACCTTATTTGCAGAGCTGCTGAATACAAATTCCCTGACCCCATTCCTGAGTTTGCTGATGCT.......................................................................................................................GAAACGGAGAAGTTCAGAGATCATTTGCTTAAGAAACTTCCAAAGAAGGATGTCTATGGAGATTCTGTTGAAGAAATTGTTGGAATCTGCACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTCAACGAGTTCTTACATGCTGAGTATGGTGGTCCAGGAACATTACTGGTTGTTCCATTCATCGATATGGCAGATACCATAAACGACAGGGGTTTACCAGGAGGACCACAGGCTGCGCGTGCTGCAATCAAATGGGCACAAAGTCATGTTGACAACGATTGGAAGGAATGGAATAGTGGTAAGAAAAAATAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407235" ref_strand="+" ref_description="SGN-E407235 [PPI-6-O2]">
      <seq>gattcttttaataagcctattggaacatcaaactcatcttcactttataagcctccggatttaaaccgaaatatcactcagatatttgggaagcttctcaacatatatagaggtaaaatatcttttcatagatttatttttgtagcttctttctcacgaatgcctttgagttaaaagtttaaactttcaaagtatgatacgatgactgatagttaattatagcactgggtgatgaccggagatcattcagctattataaagctataccagttattgagaaattgccattcaaaattgagagtgtggaccaggttaagcacctaccttctattggaaagtcgatgcaagatcattgttctttgactgcagattcaggagatagtgaccacaggaaagctgtccaaactggaacactttgagaaggatgaaaaggtaaaaacaatcagcttatttggagaggtttggggtattggtccagccactgccctaaaactttatgagaaaggacaccgaactcttgatgaactcagaaatgaggagtcactgactcattctcaaaggttaggtttgaaatattttgatgacatccaaaccaggattccacggcatgaggtcgaagagatggaacgtctgctacagaaagttggagaggaaattntgcctggtgtgattgttgtgtgtggagggtcatatagacgtggaaaggcttcttgtggtgatatggataattggtttactcatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="40082" stop="37707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39918" g_stop="39901" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39900" i_stop="39784" i_length="117">
            <donor d_prob="0.891" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39783" g_stop="39448" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="353" r_length="335" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39447" i_stop="39181" i_length="267">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39180" g_stop="39102" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="432" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39101" i_stop="38543" i_length="559">
            <donor d_prob="0.691" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38542" g_stop="38363" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="612" r_length="180" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38362" i_stop="38277" i_length="86">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38276" g_stop="38223" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="666" r_length="54" r_score="0.926"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38222" i_stop="38086" i_length="137">
            <donor d_prob="0.931" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38085" g_stop="38007" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="745" r_length="79" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E407235" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39918" e_stop="39901"/>
          <exon e_start="39783" e_stop="39448"/>
          <exon e_start="39180" e_stop="39102"/>
          <exon e_start="38542" e_stop="38363"/>
          <exon e_start="38276" e_stop="38223"/>
          <exon e_start="38085" e_stop="38007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCTCTTAATAAGCCTGTAAGTTCAGCAGCAAATTGCCCTTGCTTAATATGTTCTCCTGAGCCAGAGGTACAGGTGTAGCTATGTGGACGATTCTCACCTGTTTCATCTATATTTCTACTATTATTTTACCAGGTTGGAACATCAGACTCATCTTCACTTTATAAGCCTCCGGATTTAAACCGAAATATCACTCAGATATTCGGGAAGCTTCTCAACATATATAGAGGTAAAATATCTTTTCATACATGTTATTTTTGTAGCTTTTCTCTCACAGATGCCTTTGAGTTAAAAGCTTAAACTTTCAAAGTATGATACAATGGCTGATAGTTTATTATAGCACTGGGTGATGACCGGAGATCATTCAGCTATTATAAAGCTATACCAGTTATTGAGAAACTGCCATTCAAAATTGAGAGTGTGGACCAGGTTAAGCACCTACCTTCTATTGGAAAGTCAATGCAAGATCATGTAAGTGAATTCCTCTATTTAAAGCCTTACTAGAAATATATTTATGTCACACCATTTCAAGTTGCTGTTTACGTGAGTGAGGTTGCCAGAGGTTGGCTTCTAGCTATTCGAACTTCGTGAAATGAGATTGATATGACAAGCGGAACCAATTATCCATTAAATCACTTTCTTGGATTTTGATTTCCCGATCATGAATACCTTTGCCTCCAGCTTACAGTTAAATCTACCGAATAGGAGGACAGTTAAATCTACTGAATAAGAGGATAGTGTTCTTTTACTGCAGATTCAGGAGATAGTGACCACAGGAAAGCTGTCCAAATTGGAACACTTTGAGAAGGATGAAAAGGTGATGTTATGGGAATCTTTCTTGTCAGAAGCTCTCAATATGTTTGCAGTAGCTCAAGTCACTTGTCAATAATCATTGCGAGATCTGTACCCGATTTGCATTGTTGTAGTGAATTGTGAAGAAGCAATATGTCAATCTTTTCTGAATTAGCTCTACTAATCGTTTGTGTGTGTGTGTTTTGCTCCTACATGTTATTAGACTCTGGCTCAATAATCAATCTTTGCTAATATGTTGATAGAAGTCAAAAGCATTCAAATTCATGCTTTTATGCCTTACTAGCATACTTCATATTCATATATTTTGTTCATTTTTTCTTTCTGTATCCTTCTGCTGATTCACATATGGAAGGAATTGAACTGCGACACTGTTTAGTATTGTATTTAAAATAGGGAAACGTAACAACATAAGCTTCATCTACATTCAGAGTTCTAAAATAATTTTGAAGCTGAAGAGCTAATTTTACCATAATTCGTTTATTATGATAACCAAACGTACATTATCCTGCTCTCTGGAACACTTATTGGCTTAATCTTCTTCTAACATTATCATGACTTTACAGGTAAAAACAATCAGCTTATTTGGAGAGGTTTGGGGTGTTGGTCCATCTACTGCCCTAAAACTTTATGAGAAAGGACACCGAACTCTTGATGACCTTAGAAATGAGGAGTCACTGACTCGTTCTCAAAGGATAGGGTTGAAATATTTTGATGACATCCAGACCAGGATTCAACGGCATGAGGTAGCCTATTATGCTTTGCAGTTTTTACTATCATGATTCATGACTACTTATTGTTTTTCTCTAAAGAGTAATGATTGATTATGTAGGTCAAAGAGATGGAACGTTTGCTACAGAAAGTTGGAGAAGAAATTTTGCCTGGTGTAAGGCTTTTGTCCAATTACTTGTTGAACATTTTTAACTATATTTTGGTTGTAAGTTTGGTCTATATGGTTGTGATATTGTTGAACTTGGCTACATAATAACATCCAACTTTTATATAATGAATCCCTTGCTTTAGGTGATTGTTGTGTGTGGAGGATCATATAGACGTGGAAAGGCTTCTTGCGGTGATATGGATATTGTTATTACTCATCCTG</genome_strand>
        <mrna_strand>GATTCTTTTAATAAGCCT.....................................................................................................................ATTGGAACATCAAACTCATCTTCACTTTATAAGCCTCCGGATTTAAACCGAAATATCACTCAGATATTTGGGAAGCTTCTCAACATATATAGAGGTAAAATATCTTTTCATAGAT-TTATTTTTGTAGCTTCTTTCTCACGAATGCCTTTGAGTTAAAAGTTTAAACTTTCAAAGTATGATACGATGACTGATAGTTAATTATAGCACTGGGTGATGACCGGAGATCATTCAGCTATTATAAAGCTATACCAGTTATTGAGAAATTGCCATTCAAAATTGAGAGTGTGGACCAGGTTAAGCACCTACCTTCTATTGGAAAGTCGATGCAAGATCAT...........................................................................................................................................................................................................................................................................TGTTCTTTGACTGCAGATTCAGGAGATAGTGACCACAGGAAAGCTGTCCAAACTGGAACACTTTGAGAAGGATGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAACAATCAGCTTATTTGGAGAGGTTTGGGGTATTGGTCCAGCCACTGCCCTAAAACTTTATGAGAAAGGACACCGAACTCTTGATGAACTCAGAAATGAGGAGTCACTGACTCATTCTCAAAGGTTAGGTTTGAAATATTTTGATGACATCCAAACCAGGATTCCACGGCATGAG......................................................................................GTCGAAGAGATGGAACGTCTGCTACAGAAAGTTGGAGAGGAAATTNTGCCTGGT.........................................................................................................................................GTGATTGTTGTGTGTGGAGGGTCATATAGACGTGGAAAGGCTTCTTGTGGTGATATGGATAATTGGTTTACTCATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409392" ref_strand="+" ref_description="SGN-E409392 [PPI-13-P8]">
      <seq>gattcttttaataagcctattggaacatcaaactcatcttcactttataagcctccggatttaaaccgaaatatcactcagatatttgggaagcttctcaacatatatagaggtaaaatatcttttcatagatttatttttgtagcttctttctcacgaatgcctttgagttaaaagtttaaactttcaaagtatgatacgatgactgatagttaattatagcactgggtgatgaccggagatcattcagctattataaagctataccagttattgagaaattgccattcaaaattgagagtgtggaccaggttaagcacctaccttctattggaaagtcgatgcaagatcattgttctttgactgcagattcaggagatagtgaccacaggaaagctgtccaaactggaacactttgagaagggatgaaaggtaaaaacaatcagcttatttggagaaggttgggggtattggtccagccactgccctaaaactttatgagaaaggacaccgaactcttgatgaactcagaaatgaggagtcactgactcattctcaaaggttaggtttgaaatattttgatgacatccaaaccaggattccacggcatgaggtcgaagagatggaacgtctgctacagaaaagtggagaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="40082" stop="38059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39918" g_stop="39901" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39900" i_stop="39784" i_length="117">
            <donor d_prob="0.891" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39783" g_stop="39448" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="353" r_length="335" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39447" i_stop="39181" i_length="267">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39180" g_stop="39102" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="432" r_length="79" r_score="0.937"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39101" i_stop="38543" i_length="559">
            <donor d_prob="0.691" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38542" g_stop="38363" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="613" r_length="181" r_score="0.928"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38362" i_stop="38277" i_length="86">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38276" g_stop="38235" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="655" r_length="42" r_score="0.881"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E409392" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39918" e_stop="39901"/>
          <exon e_start="39783" e_stop="39448"/>
          <exon e_start="39180" e_stop="39102"/>
          <exon e_start="38542" e_stop="38363"/>
          <exon e_start="38276" e_stop="38235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCTCTTAATAAGCCTGTAAGTTCAGCAGCAAATTGCCCTTGCTTAATATGTTCTCCTGAGCCAGAGGTACAGGTGTAGCTATGTGGACGATTCTCACCTGTTTCATCTATATTTCTACTATTATTTTACCAGGTTGGAACATCAGACTCATCTTCACTTTATAAGCCTCCGGATTTAAACCGAAATATCACTCAGATATTCGGGAAGCTTCTCAACATATATAGAGGTAAAATATCTTTTCATACATGTTATTTTTGTAGCTTTTCTCTCACAGATGCCTTTGAGTTAAAAGCTTAAACTTTCAAAGTATGATACAATGGCTGATAGTTTATTATAGCACTGGGTGATGACCGGAGATCATTCAGCTATTATAAAGCTATACCAGTTATTGAGAAACTGCCATTCAAAATTGAGAGTGTGGACCAGGTTAAGCACCTACCTTCTATTGGAAAGTCAATGCAAGATCATGTAAGTGAATTCCTCTATTTAAAGCCTTACTAGAAATATATTTATGTCACACCATTTCAAGTTGCTGTTTACGTGAGTGAGGTTGCCAGAGGTTGGCTTCTAGCTATTCGAACTTCGTGAAATGAGATTGATATGACAAGCGGAACCAATTATCCATTAAATCACTTTCTTGGATTTTGATTTCCCGATCATGAATACCTTTGCCTCCAGCTTACAGTTAAATCTACCGAATAGGAGGACAGTTAAATCTACTGAATAAGAGGATAGTGTTCTTTTACTGCAGATTCAGGAGATAGTGACCACAGGAAAGCTGTCCAAATTGGAACACTTTGAGAA-GGATGAAAAGGTGATGTTATGGGAATCTTTCTTGTCAGAAGCTCTCAATATGTTTGCAGTAGCTCAAGTCACTTGTCAATAATCATTGCGAGATCTGTACCCGATTTGCATTGTTGTAGTGAATTGTGAAGAAGCAATATGTCAATCTTTTCTGAATTAGCTCTACTAATCGTTTGTGTGTGTGTGTTTTGCTCCTACATGTTATTAGACTCTGGCTCAATAATCAATCTTTGCTAATATGTTGATAGAAGTCAAAAGCATTCAAATTCATGCTTTTATGCCTTACTAGCATACTTCATATTCATATATTTTGTTCATTTTTTCTTTCTGTATCCTTCTGCTGATTCACATATGGAAGGAATTGAACTGCGACACTGTTTAGTATTGTATTTAAAATAGGGAAACGTAACAACATAAGCTTCATCTACATTCAGAGTTCTAAAATAATTTTGAAGCTGAAGAGCTAATTTTACCATAATTCGTTTATTATGATAACCAAACGTACATTATCCTGCTCTCTGGAACACTTATTGGCTTAATCTTCTTCTAACATTATCATGACTTTACAGGTAAAAACAATCAGCTTATTTGGAG-AGGTTTGGGGTGTTGGTCCATCTACTGCCCTAAAACTTTATGAGAAAGGACACCGAACTCTTGATGACCTTAGAAATGAGGAGTCACTGACTCGTTCTCAAAGGATAGGGTTGAAATATTTTGATGACATCCAGACCAGGATTCAACGGCATGAGGTAGCCTATTATGCTTTGCAGTTTTTACTATCATGATTCATGACTACTTATTGTTTTTCTCTAAAGAGTAATGATTGATTATGTAGGTCAAAGAGATGGAACGTTTGCTACAGAAAGTTGGAGAAGAA</genome_strand>
        <mrna_strand>GATTCTTTTAATAAGCCT.....................................................................................................................ATTGGAACATCAAACTCATCTTCACTTTATAAGCCTCCGGATTTAAACCGAAATATCACTCAGATATTTGGGAAGCTTCTCAACATATATAGAGGTAAAATATCTTTTCATAGAT-TTATTTTTGTAGCTTCTTTCTCACGAATGCCTTTGAGTTAAAAGTTTAAACTTTCAAAGTATGATACGATGACTGATAGTTAATTATAGCACTGGGTGATGACCGGAGATCATTCAGCTATTATAAAGCTATACCAGTTATTGAGAAATTGCCATTCAAAATTGAGAGTGTGGACCAGGTTAAGCACCTACCTTCTATTGGAAAGTCGATGCAAGATCAT...........................................................................................................................................................................................................................................................................TGTTCTTTGACTGCAGATTCAGGAGATAGTGACCACAGGAAAGCTGTCCAAACTGGAACACTTTGAGAAGGGATG-AAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAACAATCAGCTTATTTGGAGAAGGTTGGGGGTATTGGTCCAGCCACTGCCCTAAAACTTTATGAGAAAGGACACCGAACTCTTGATGAACTCAGAAATGAGGAGTCACTGACTCATTCTCAAAGGTTAGGTTTGAAATATTTTGATGACATCCAAACCAGGATTCCACGGCATGAG......................................................................................GTCGAAGAGATGGAACGTCTGCTACAGAAAAGTGGAGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421078" ref_strand="+" ref_description="SGN-E421078 [STM-32-A20]">
      <seq>gattcttttaataagcctattggaacatcaaactcatcttcactttataagcctccggatttaaaccgaaatatcactcagatatttgggaagcttctcaacatatatagaggtaaaatatcttttcatagatttatttttgtagcttctttctcacgaatgcctttgagttaaaagtttaaactttcaaagtatgatacgatgactgatagttaattatagcactgggtgatgaccggagatcattcagctattataaagctataccagttattgagaaattgccattcaaaattgagagtgtggaccaggttaagcacctaccttctattggaaagtcgatgcaagatcattgttctttgactgcagattcaggagatagtgaccacaggaaagctgtccaaactggaacactttgagaaggatgaaaaggtaaaaacaatcagcttatttggagaggtttggggtattggtccagccactgccctaaaactttatgagaaaggacaccgaactcttgatgaactcagaaatgaggagtcactgactcattctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="40082" stop="38119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39918" g_stop="39901" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39900" i_stop="39784" i_length="117">
            <donor d_prob="0.891" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39783" g_stop="39448" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="353" r_length="335" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39447" i_stop="39181" i_length="267">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39180" g_stop="39102" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="432" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39101" i_stop="38543" i_length="559">
            <donor d_prob="0.691" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38542" g_stop="38419" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="556" r_length="124" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E421078" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39918" e_stop="39901"/>
          <exon e_start="39783" e_stop="39448"/>
          <exon e_start="39180" e_stop="39102"/>
          <exon e_start="38542" e_stop="38419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCTCTTAATAAGCCTGTAAGTTCAGCAGCAAATTGCCCTTGCTTAATATGTTCTCCTGAGCCAGAGGTACAGGTGTAGCTATGTGGACGATTCTCACCTGTTTCATCTATATTTCTACTATTATTTTACCAGGTTGGAACATCAGACTCATCTTCACTTTATAAGCCTCCGGATTTAAACCGAAATATCACTCAGATATTCGGGAAGCTTCTCAACATATATAGAGGTAAAATATCTTTTCATACATGTTATTTTTGTAGCTTTTCTCTCACAGATGCCTTTGAGTTAAAAGCTTAAACTTTCAAAGTATGATACAATGGCTGATAGTTTATTATAGCACTGGGTGATGACCGGAGATCATTCAGCTATTATAAAGCTATACCAGTTATTGAGAAACTGCCATTCAAAATTGAGAGTGTGGACCAGGTTAAGCACCTACCTTCTATTGGAAAGTCAATGCAAGATCATGTAAGTGAATTCCTCTATTTAAAGCCTTACTAGAAATATATTTATGTCACACCATTTCAAGTTGCTGTTTACGTGAGTGAGGTTGCCAGAGGTTGGCTTCTAGCTATTCGAACTTCGTGAAATGAGATTGATATGACAAGCGGAACCAATTATCCATTAAATCACTTTCTTGGATTTTGATTTCCCGATCATGAATACCTTTGCCTCCAGCTTACAGTTAAATCTACCGAATAGGAGGACAGTTAAATCTACTGAATAAGAGGATAGTGTTCTTTTACTGCAGATTCAGGAGATAGTGACCACAGGAAAGCTGTCCAAATTGGAACACTTTGAGAAGGATGAAAAGGTGATGTTATGGGAATCTTTCTTGTCAGAAGCTCTCAATATGTTTGCAGTAGCTCAAGTCACTTGTCAATAATCATTGCGAGATCTGTACCCGATTTGCATTGTTGTAGTGAATTGTGAAGAAGCAATATGTCAATCTTTTCTGAATTAGCTCTACTAATCGTTTGTGTGTGTGTGTTTTGCTCCTACATGTTATTAGACTCTGGCTCAATAATCAATCTTTGCTAATATGTTGATAGAAGTCAAAAGCATTCAAATTCATGCTTTTATGCCTTACTAGCATACTTCATATTCATATATTTTGTTCATTTTTTCTTTCTGTATCCTTCTGCTGATTCACATATGGAAGGAATTGAACTGCGACACTGTTTAGTATTGTATTTAAAATAGGGAAACGTAACAACATAAGCTTCATCTACATTCAGAGTTCTAAAATAATTTTGAAGCTGAAGAGCTAATTTTACCATAATTCGTTTATTATGATAACCAAACGTACATTATCCTGCTCTCTGGAACACTTATTGGCTTAATCTTCTTCTAACATTATCATGACTTTACAGGTAAAAACAATCAGCTTATTTGGAGAGGTTTGGGGTGTTGGTCCATCTACTGCCCTAAAACTTTATGAGAAAGGACACCGAACTCTTGATGACCTTAGAAATGAGGAGTCACTGACTCGTTCTC</genome_strand>
        <mrna_strand>GATTCTTTTAATAAGCCT.....................................................................................................................ATTGGAACATCAAACTCATCTTCACTTTATAAGCCTCCGGATTTAAACCGAAATATCACTCAGATATTTGGGAAGCTTCTCAACATATATAGAGGTAAAATATCTTTTCATAGAT-TTATTTTTGTAGCTTCTTTCTCACGAATGCCTTTGAGTTAAAAGTTTAAACTTTCAAAGTATGATACGATGACTGATAGTTAATTATAGCACTGGGTGATGACCGGAGATCATTCAGCTATTATAAAGCTATACCAGTTATTGAGAAATTGCCATTCAAAATTGAGAGTGTGGACCAGGTTAAGCACCTACCTTCTATTGGAAAGTCGATGCAAGATCAT...........................................................................................................................................................................................................................................................................TGTTCTTTGACTGCAGATTCAGGAGATAGTGACCACAGGAAAGCTGTCCAAACTGGAACACTTTGAGAAGGATGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAACAATCAGCTTATTTGGAGAGGTTTGGGGTATTGGTCCAGCCACTGCCCTAAAACTTTATGAGAAAGGACACCGAACTCTTGATGAACTCAGAAATGAGGAGTCACTGACTCATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722538" ref_strand="+" ref_description="SGN-E722538 [FC17CC08]">
      <seq>agactgtgatgacgcgaaagaaggttgaatctccgccgcgtgatcctaatggaatgttttccggtatggttgtcttctttgtcggaaccggagttatgtccctccggctacagatatggaagaggaaattgttgcaaatgggggctatatttaacgaccggtttactggaaatgtaactcatgtttttgcaaaggatgcaaatttgcttcttgagaaatttgataaagaacttctgattcgcaccaaagctaaatttctctcgtatcagtggctagaggacagcttaatacaaggagaaaaagcatctgaggatctgtatgtcttatccctgcaatcaggaggaggaaagtcccttagtcctaaagctgataatgacggtcattctgataatgacggtcattctagagttgcactaaagaaaagtcgaatatctgctgaagatgccaagaattcatgcccaagacacgttaatgacaataaagaccgtgttgatccacgagatactaaaagtgcctctttacttgcatcacactcttcaagcccagaagtgacaagtccagaggccattcattctcttaataagcctgttggaacatcagactcatcttcactttataagcctccggatttaaaccgaaatatcactcagatattcgggaagcttctcaacatatatagagcactgggtgatgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="43289" stop="39264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42989" g_stop="42877" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42876" i_stop="42789" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42788" g_stop="42651" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="251" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42650" i_stop="40237" i_length="2414">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40236" g_stop="39901" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="587" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39900" i_stop="39784" i_length="117">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39783" g_stop="39690" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="681" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39689" i_stop="39579" i_length="111">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.377" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39578" g_stop="39564" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="696" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E722538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42989" e_stop="42877"/>
          <exon e_start="42788" e_stop="42651"/>
          <exon e_start="40236" e_stop="39901"/>
          <exon e_start="39783" e_stop="39690"/>
          <exon e_start="39578" e_stop="39564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTGTGATGACGCGAAAGAAGGTTGAATCTCCGCCGCGTGATCCTAATGGAATGTTTTCCGGTATGGTTGTCTTCTTTGTCGGAACCGGAGTTATGTCCCTCCGGCTACAGGTTTCAATCCACAATTTCTCTTCTTTTTTTTCAAATTTTTCCTTTTTCTTTTTCATAATTGTTTGAAATTTTTTTTTTTTGGTTGCAGATATGGAAGAGGAAATTGTTGCAAATGGGGGCTATATTTAACGACCGGTTTACTGGAAATGTAACTCATGTTTTTGCAAAGGATGCAAATTTGCTTCTTGAGAAATTTGATAAAGAACTTCTGATTCGCACCAAAGCTGTGAGCTTTATTAACTCTTATGCTTTGTAGACTCTTTAATTGAGACTTTTTGATGTTTTTTTAGGGATTAAATGAGTATTTATCATGTTGGTACAGCTACATGAGAACTAGTGTCTACTAGGAGCTTTTAGTTTGTTTGGATAGTATAGAAGATTGACTAGTAACAGTATAGTTAAATTTGTTTTTTTTTTCTTTTTGGTAACCTGGTGTCTATGTTAGCTTTGGGGAGTGGTGGTTGTGCGAGCAATATGTGAGATAGGACAATTGGTTGCATTAAGGAAGTTGCAAGAGAGGTATTGGGGGTTTCAAGGAGTAGCTTTGGAGGATATCTAGGGAATTTGTGGCGGAATGGAAGAAAATAAGACGGGTTAGTAAATTTTTTGGAGGGGAAGGACGAGGGGATAAGCGAGTGAATATGGAAAGGTATAAAGTGGTGAAGAAGGAGACAAAGTTGGTGGTTAGGATATCGAAGTCGACAACTTTTGATCGCTTGTATGGAAACTAGGGAACAAAGGAGGAGATAAGAAGTCGTACAGTCTAGCCAAGGAGAGAGAGGTGAAGGCACAAGACCTGGACCAAGTGCGTCAAAGATGAGGATGGCGAATTTTTGGTGGAGGAGACACTCATTAGACGAAAATGACATACATACTTCTATAAATTCTTGAATGAAACCTTAGGTGTCTATAGTACCTACTTGTGTCTGGTGGGCTATTTGGAGTGAAAGAAACCTTAGGTGTCATGAGAATATTCTTAACACTATTCAGAAAGTTAAAGAAAGTTGCATTAACATGTTTTTTTGGTGTAAAGAAGATGGTATAGAAGAAGTAGAGCAGTTGGTAGATTTTGTAGGATCTTTGTAATTATGGATTTAGCTTGTAACTTTTTGGAGGTAGCTAGCATACCCTTAATGCAGAAGAATACAACTTTAACTTTATCCAAAAAAAAAAAACTCTTGAATGAAGAGGAGGATAGAGACATTATGCTGGAGCTTTGGAGCATTCTAAAAGATGATAGGATTTTGGGTATTGAAGAGTTTAAAGGTGATATTCGTAGGATGAGTAGGGGAAGAGTGATCAGGCCATATGTTTGCCCATCCCTGAAATTCGAAGAAGTCTTTTATGGGACAGTCAAGGGCAAGAAGAAGATTCAAATCCACGATTCTACCATGCATGGGGTTTTGTCCCTAAGAGGTGAAAAATGGTTTCATTAGGGGGACACCAAAAGTCAATTTTGACATCCAAGGAACTACTAAGATCAAACTTGAATTTTTTCTTAGATTCTCCAGAAGTATTGTAGTCCCAAAACACTTAACCATGAGAGGAACCAGATCACAATCGGTGAAAGAATTCCTCAGAGAAATCAGAATCGATGGAAAGAGGAGAAGAAACAGTTCTTTTTCCTTTGTGTCTAGCACTCTTGCGAGTGGTTATAGGGGAGTACTTCTGTGATTTAGCCATGAGGAAAATTTCAAGATAGGAGAAATAGGAATTTTATGAAGAGTGAAGAAAGAAAAGGGACAAATATGGCAATTCAAGGGTTTGTGATGGGAAAGGACAAGACAGCAAAAAGGCATAATGATGATTATGGAAAGACGAGAGAAGGCAGCAAATAGGAAGAGTTCTTACAGAAAAGAGGGAAACGAATAATGAACTCACATTGAAAACATAAGGAAAGATACAGTCATTAATAAAAAAAAATCTAAAATAATTCCAAGAGATTCTCTGAGAGTGCAAAATCTTTCTTCAAGCAAGGGTCTTGTAAAAATATCAGCCAATTAAAATTCAGTGCTCACAAAAGAAAGTAAAGCATCACCGTTTATGATATGATCTCAAATAAAATGATGCGTATGCTTGGCCCTAGAATGATGGACGGGAGTTTTAGTCAGGCAAATAGCACTAGAACTTGAACTGGTTTAAAAGACAACTCCTAATTTTTAGTTGAGCATTATAGAATTCTCAGTGATAATTGAGTAAATGGATGTTTCACTAATAATATATCCTTCTCCATTTGTGAATATGCCTTCCTCTTTCGGACCAGTTGTATTCCAATTTATCTTTGTTCTTGATCCATTACTTTCTTGGAAGATTTTTGACCTTTCTTGCTGATATCATTCTTATCCTGCTGCTTCAAATTACTAATTTTTTGGATAAGCTGCTTTAAAGTAACATTTGTTATTTTAGGACAGTTGATTTTTCTAAACTTCTTCTATATTACTCCTAACCTTTTAGGAGTGGCTTATAATTTTTGTGATATATTTACGTACTTCCGAAATCCTTTCATATTCAATGGGCTTTAGTGACCTAAATATGTTGTTTTACACGAATTGCCTGTTTGACAGATGATGCATTTTCTAGTGATTGATAAAAAATATGTTTCTCCAACTATCTTGGTGATTGTTTTTCGTTTTCCTATAGAAATTTCTCTCGTATCAGTGGCTAGAGGACAGCTTAATACAAGGAGAAAAAGCATCTGAGGATCTGTATGTCTTATCCCTGCAATCAGGAGGAGGAAAGTCCCTTAGTCCTAAAGCTGATAATGACGGTCATTCTGATAATGACGGTCATTCTAGAGTTGCACTAAAGAAAAGTCGAATATCTGCTGAAGATGCCAAGAATTCATGCCCAAGACACGTTAATGACAATAAAGACCGTGTTGATCCACGAGATACTAAAAGTGCCTCTTTACTTGCATCACACTCTTCAAGCCCAGAAGTGACAAGTCCAGAGGCCATTCATTCTCTTAATAAGCCTGTAAGTTCAGCAGCAAATTGCCCTTGCTTAATATGTTCTCCTGAGCCAGAGGTACAGGTGTAGCTATGTGGACGATTCTCACCTGTTTCATCTATATTTCTACTATTATTTTACCAGGTTGGAACATCAGACTCATCTTCACTTTATAAGCCTCCGGATTTAAACCGAAATATCACTCAGATATTCGGGAAGCTTCTCAACATATATAGAGGTAAAATATCTTTTCATACATGTTATTTTTGTAGCTTTTCTCTCACAGATGCCTTTGAGTTAAAAGCTTAAACTTTCAAAGTATGATACAATGGCTGATAGTTTATTATAGCACTGGGTGATGACC</genome_strand>
        <mrna_strand>AGACTGTGATGACGCGAAAGAAGGTTGAATCTCCGCCGCGTGATCCTAATGGAATGTTTTCCGGTATGGTTGTCTTCTTTGTCGGAACCGGAGTTATGTCCCTCCGGCTACAG........................................................................................ATATGGAAGAGGAAATTGTTGCAAATGGGGGCTATATTTAACGACCGGTTTACTGGAAATGTAACTCATGTTTTTGCAAAGGATGCAAATTTGCTTCTTGAGAAATTTGATAAAGAACTTCTGATTCGCACCAAAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTCTCTCGTATCAGTGGCTAGAGGACAGCTTAATACAAGGAGAAAAAGCATCTGAGGATCTGTATGTCTTATCCCTGCAATCAGGAGGAGGAAAGTCCCTTAGTCCTAAAGCTGATAATGACGGTCATTCTGATAATGACGGTCATTCTAGAGTTGCACTAAAGAAAAGTCGAATATCTGCTGAAGATGCCAAGAATTCATGCCCAAGACACGTTAATGACAATAAAGACCGTGTTGATCCACGAGATACTAAAAGTGCCTCTTTACTTGCATCACACTCTTCAAGCCCAGAAGTGACAAGTCCAGAGGCCATTCATTCTCTTAATAAGCCT.....................................................................................................................GTTGGAACATCAGACTCATCTTCACTTTATAAGCCTCCGGATTTAAACCGAAATATCACTCAGATATTCGGGAAGCTTCTCAACATATATAGAG...............................................................................................................CACTGGGTGATGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341026" ref_strand="+" ref_description="SGN-E341026 [cTOF-5-J16]">
      <seq>tttgagaagaagactgtgatgacgcgaaagaaggttgaatctccgccgcgtgatcctaatggaatgttttccggtatggttgtcttctttgtcggaaccggagttatgtccctccggctacagatatggaagaggaaattgttgcaaatgggggctatatttaacgaccggtttactggaaatgtaactcatgtttttgcaaaggatgcaaatttgcttcttgagaaatttgataaagaacttctgattcgcaccaaagctaaatttctctcgtatcagtggctagaggacagcttaatacaaggagaaaaagcatctgaggatctgtatgtcttatccctgcaatcaggaggaggaaagtcccttagtcctaaagctgataatgacggtcattctgataatgacggtcattctagagttgcactaaagaaaagtcgaatatctgctgaagatgccaagaattcatgcccaagacacgttaatgacaataaagaccgtgttgatccacgagatactaaaagtgcctctttacttgcatcacactcttcaagcccagaagtgacaagtccagaggccattcattctcttaataagcctgttggaacatcagactcatcttcactttataagcctncggatttaaaccgaaatatcactcagatattcgggaagcttctcaacatatatagagcactgggtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="43299" stop="39390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42999" g_stop="42877" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42876" i_stop="42789" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42788" g_stop="42651" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="261" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42650" i_stop="40237" i_length="2414">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40236" g_stop="39901" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="597" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39900" i_stop="39784" i_length="117">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39783" g_stop="39690" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="691" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39689" i_stop="39579" i_length="111">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.377" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39578" g_stop="39567" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="703" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E341026" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42999" e_stop="42877"/>
          <exon e_start="42788" e_stop="42651"/>
          <exon e_start="40236" e_stop="39901"/>
          <exon e_start="39783" e_stop="39690"/>
          <exon e_start="39578" e_stop="39567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGAAGAAGACTGTGATGACGCGAAAGAAGGTTGAATCTCCGCCGCGTGATCCTAATGGAATGTTTTCCGGTATGGTTGTCTTCTTTGTCGGAACCGGAGTTATGTCCCTCCGGCTACAGGTTTCAATCCACAATTTCTCTTCTTTTTTTTCAAATTTTTCCTTTTTCTTTTTCATAATTGTTTGAAATTTTTTTTTTTTGGTTGCAGATATGGAAGAGGAAATTGTTGCAAATGGGGGCTATATTTAACGACCGGTTTACTGGAAATGTAACTCATGTTTTTGCAAAGGATGCAAATTTGCTTCTTGAGAAATTTGATAAAGAACTTCTGATTCGCACCAAAGCTGTGAGCTTTATTAACTCTTATGCTTTGTAGACTCTTTAATTGAGACTTTTTGATGTTTTTTTAGGGATTAAATGAGTATTTATCATGTTGGTACAGCTACATGAGAACTAGTGTCTACTAGGAGCTTTTAGTTTGTTTGGATAGTATAGAAGATTGACTAGTAACAGTATAGTTAAATTTGTTTTTTTTTTCTTTTTGGTAACCTGGTGTCTATGTTAGCTTTGGGGAGTGGTGGTTGTGCGAGCAATATGTGAGATAGGACAATTGGTTGCATTAAGGAAGTTGCAAGAGAGGTATTGGGGGTTTCAAGGAGTAGCTTTGGAGGATATCTAGGGAATTTGTGGCGGAATGGAAGAAAATAAGACGGGTTAGTAAATTTTTTGGAGGGGAAGGACGAGGGGATAAGCGAGTGAATATGGAAAGGTATAAAGTGGTGAAGAAGGAGACAAAGTTGGTGGTTAGGATATCGAAGTCGACAACTTTTGATCGCTTGTATGGAAACTAGGGAACAAAGGAGGAGATAAGAAGTCGTACAGTCTAGCCAAGGAGAGAGAGGTGAAGGCACAAGACCTGGACCAAGTGCGTCAAAGATGAGGATGGCGAATTTTTGGTGGAGGAGACACTCATTAGACGAAAATGACATACATACTTCTATAAATTCTTGAATGAAACCTTAGGTGTCTATAGTACCTACTTGTGTCTGGTGGGCTATTTGGAGTGAAAGAAACCTTAGGTGTCATGAGAATATTCTTAACACTATTCAGAAAGTTAAAGAAAGTTGCATTAACATGTTTTTTTGGTGTAAAGAAGATGGTATAGAAGAAGTAGAGCAGTTGGTAGATTTTGTAGGATCTTTGTAATTATGGATTTAGCTTGTAACTTTTTGGAGGTAGCTAGCATACCCTTAATGCAGAAGAATACAACTTTAACTTTATCCAAAAAAAAAAAACTCTTGAATGAAGAGGAGGATAGAGACATTATGCTGGAGCTTTGGAGCATTCTAAAAGATGATAGGATTTTGGGTATTGAAGAGTTTAAAGGTGATATTCGTAGGATGAGTAGGGGAAGAGTGATCAGGCCATATGTTTGCCCATCCCTGAAATTCGAAGAAGTCTTTTATGGGACAGTCAAGGGCAAGAAGAAGATTCAAATCCACGATTCTACCATGCATGGGGTTTTGTCCCTAAGAGGTGAAAAATGGTTTCATTAGGGGGACACCAAAAGTCAATTTTGACATCCAAGGAACTACTAAGATCAAACTTGAATTTTTTCTTAGATTCTCCAGAAGTATTGTAGTCCCAAAACACTTAACCATGAGAGGAACCAGATCACAATCGGTGAAAGAATTCCTCAGAGAAATCAGAATCGATGGAAAGAGGAGAAGAAACAGTTCTTTTTCCTTTGTGTCTAGCACTCTTGCGAGTGGTTATAGGGGAGTACTTCTGTGATTTAGCCATGAGGAAAATTTCAAGATAGGAGAAATAGGAATTTTATGAAGAGTGAAGAAAGAAAAGGGACAAATATGGCAATTCAAGGGTTTGTGATGGGAAAGGACAAGACAGCAAAAAGGCATAATGATGATTATGGAAAGACGAGAGAAGGCAGCAAATAGGAAGAGTTCTTACAGAAAAGAGGGAAACGAATAATGAACTCACATTGAAAACATAAGGAAAGATACAGTCATTAATAAAAAAAAATCTAAAATAATTCCAAGAGATTCTCTGAGAGTGCAAAATCTTTCTTCAAGCAAGGGTCTTGTAAAAATATCAGCCAATTAAAATTCAGTGCTCACAAAAGAAAGTAAAGCATCACCGTTTATGATATGATCTCAAATAAAATGATGCGTATGCTTGGCCCTAGAATGATGGACGGGAGTTTTAGTCAGGCAAATAGCACTAGAACTTGAACTGGTTTAAAAGACAACTCCTAATTTTTAGTTGAGCATTATAGAATTCTCAGTGATAATTGAGTAAATGGATGTTTCACTAATAATATATCCTTCTCCATTTGTGAATATGCCTTCCTCTTTCGGACCAGTTGTATTCCAATTTATCTTTGTTCTTGATCCATTACTTTCTTGGAAGATTTTTGACCTTTCTTGCTGATATCATTCTTATCCTGCTGCTTCAAATTACTAATTTTTTGGATAAGCTGCTTTAAAGTAACATTTGTTATTTTAGGACAGTTGATTTTTCTAAACTTCTTCTATATTACTCCTAACCTTTTAGGAGTGGCTTATAATTTTTGTGATATATTTACGTACTTCCGAAATCCTTTCATATTCAATGGGCTTTAGTGACCTAAATATGTTGTTTTACACGAATTGCCTGTTTGACAGATGATGCATTTTCTAGTGATTGATAAAAAATATGTTTCTCCAACTATCTTGGTGATTGTTTTTCGTTTTCCTATAGAAATTTCTCTCGTATCAGTGGCTAGAGGACAGCTTAATACAAGGAGAAAAAGCATCTGAGGATCTGTATGTCTTATCCCTGCAATCAGGAGGAGGAAAGTCCCTTAGTCCTAAAGCTGATAATGACGGTCATTCTGATAATGACGGTCATTCTAGAGTTGCACTAAAGAAAAGTCGAATATCTGCTGAAGATGCCAAGAATTCATGCCCAAGACACGTTAATGACAATAAAGACCGTGTTGATCCACGAGATACTAAAAGTGCCTCTTTACTTGCATCACACTCTTCAAGCCCAGAAGTGACAAGTCCAGAGGCCATTCATTCTCTTAATAAGCCTGTAAGTTCAGCAGCAAATTGCCCTTGCTTAATATGTTCTCCTGAGCCAGAGGTACAGGTGTAGCTATGTGGACGATTCTCACCTGTTTCATCTATATTTCTACTATTATTTTACCAGGTTGGAACATCAGACTCATCTTCACTTTATAAGCCTCCGGATTTAAACCGAAATATCACTCAGATATTCGGGAAGCTTCTCAACATATATAGAGGTAAAATATCTTTTCATACATGTTATTTTTGTAGCTTTTCTCTCACAGATGCCTTTGAGTTAAAAGCTTAAACTTTCAAAGTATGATACAATGGCTGATAGTTTATTATAGCACTGGGTGATG</genome_strand>
        <mrna_strand>TTTGAGAAGAAGACTGTGATGACGCGAAAGAAGGTTGAATCTCCGCCGCGTGATCCTAATGGAATGTTTTCCGGTATGGTTGTCTTCTTTGTCGGAACCGGAGTTATGTCCCTCCGGCTACAG........................................................................................ATATGGAAGAGGAAATTGTTGCAAATGGGGGCTATATTTAACGACCGGTTTACTGGAAATGTAACTCATGTTTTTGCAAAGGATGCAAATTTGCTTCTTGAGAAATTTGATAAAGAACTTCTGATTCGCACCAAAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTCTCTCGTATCAGTGGCTAGAGGACAGCTTAATACAAGGAGAAAAAGCATCTGAGGATCTGTATGTCTTATCCCTGCAATCAGGAGGAGGAAAGTCCCTTAGTCCTAAAGCTGATAATGACGGTCATTCTGATAATGACGGTCATTCTAGAGTTGCACTAAAGAAAAGTCGAATATCTGCTGAAGATGCCAAGAATTCATGCCCAAGACACGTTAATGACAATAAAGACCGTGTTGATCCACGAGATACTAAAAGTGCCTCTTTACTTGCATCACACTCTTCAAGCCCAGAAGTGACAAGTCCAGAGGCCATTCATTCTCTTAATAAGCCT.....................................................................................................................GTTGGAACATCAGACTCATCTTCACTTTATAAGCCTNCGGATTTAAACCGAAATATCACTCAGATATTCGGGAAGCTTCTCAACATATATAGAG...............................................................................................................CACTGGGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269522" ref_strand="+" ref_description="SGN-E269522 [cLEM-2-C11]">
      <seq>ttgaatctccgccgcgtgatcctaatggaatgttttccggtatggttgtcttctttgtcggaaccggagttatgtccctccggctacagatatggaagaggaaattgttgcaaatgggggctatatttaacgaccggtttactggaaatgtaactcatgtttttgcaaaggatgcaaatttgcttcttgagaaatttgataaagaacttctgattcgcaccaaagctaaatttctctcgtatcagtggctagaggacagcttaatacaaggagaaaaagcatctgaggatctgtatgtcttatccctgcaatcaggaggaggaaagtcccttagtcctaaagctgataatgacggtcattctgataatgacggtcattctagagttgcactaaagaaaagtcgaatatctgctgaagatgccaagaattcatgcccaagacacgttaatgacaataaagaccgtgttgatccacgagatactaaaagtgcctctttacttgcatcacactcttcaagcccagaagtgacaagtccagaggccattcattctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="43265" stop="39610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42965" g_stop="42877" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42876" i_stop="42789" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42788" g_stop="42651" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="227" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42650" i_stop="40237" i_length="2414">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40236" g_stop="39910" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="554" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E269522" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42965" e_stop="42877"/>
          <exon e_start="42788" e_stop="42651"/>
          <exon e_start="40236" e_stop="39910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATCTCCGCCGCGTGATCCTAATGGAATGTTTTCCGGTATGGTTGTCTTCTTTGTCGGAACCGGAGTTATGTCCCTCCGGCTACAGGTTTCAATCCACAATTTCTCTTCTTTTTTTTCAAATTTTTCCTTTTTCTTTTTCATAATTGTTTGAAATTTTTTTTTTTTGGTTGCAGATATGGAAGAGGAAATTGTTGCAAATGGGGGCTATATTTAACGACCGGTTTACTGGAAATGTAACTCATGTTTTTGCAAAGGATGCAAATTTGCTTCTTGAGAAATTTGATAAAGAACTTCTGATTCGCACCAAAGCTGTGAGCTTTATTAACTCTTATGCTTTGTAGACTCTTTAATTGAGACTTTTTGATGTTTTTTTAGGGATTAAATGAGTATTTATCATGTTGGTACAGCTACATGAGAACTAGTGTCTACTAGGAGCTTTTAGTTTGTTTGGATAGTATAGAAGATTGACTAGTAACAGTATAGTTAAATTTGTTTTTTTTTTCTTTTTGGTAACCTGGTGTCTATGTTAGCTTTGGGGAGTGGTGGTTGTGCGAGCAATATGTGAGATAGGACAATTGGTTGCATTAAGGAAGTTGCAAGAGAGGTATTGGGGGTTTCAAGGAGTAGCTTTGGAGGATATCTAGGGAATTTGTGGCGGAATGGAAGAAAATAAGACGGGTTAGTAAATTTTTTGGAGGGGAAGGACGAGGGGATAAGCGAGTGAATATGGAAAGGTATAAAGTGGTGAAGAAGGAGACAAAGTTGGTGGTTAGGATATCGAAGTCGACAACTTTTGATCGCTTGTATGGAAACTAGGGAACAAAGGAGGAGATAAGAAGTCGTACAGTCTAGCCAAGGAGAGAGAGGTGAAGGCACAAGACCTGGACCAAGTGCGTCAAAGATGAGGATGGCGAATTTTTGGTGGAGGAGACACTCATTAGACGAAAATGACATACATACTTCTATAAATTCTTGAATGAAACCTTAGGTGTCTATAGTACCTACTTGTGTCTGGTGGGCTATTTGGAGTGAAAGAAACCTTAGGTGTCATGAGAATATTCTTAACACTATTCAGAAAGTTAAAGAAAGTTGCATTAACATGTTTTTTTGGTGTAAAGAAGATGGTATAGAAGAAGTAGAGCAGTTGGTAGATTTTGTAGGATCTTTGTAATTATGGATTTAGCTTGTAACTTTTTGGAGGTAGCTAGCATACCCTTAATGCAGAAGAATACAACTTTAACTTTATCCAAAAAAAAAAAACTCTTGAATGAAGAGGAGGATAGAGACATTATGCTGGAGCTTTGGAGCATTCTAAAAGATGATAGGATTTTGGGTATTGAAGAGTTTAAAGGTGATATTCGTAGGATGAGTAGGGGAAGAGTGATCAGGCCATATGTTTGCCCATCCCTGAAATTCGAAGAAGTCTTTTATGGGACAGTCAAGGGCAAGAAGAAGATTCAAATCCACGATTCTACCATGCATGGGGTTTTGTCCCTAAGAGGTGAAAAATGGTTTCATTAGGGGGACACCAAAAGTCAATTTTGACATCCAAGGAACTACTAAGATCAAACTTGAATTTTTTCTTAGATTCTCCAGAAGTATTGTAGTCCCAAAACACTTAACCATGAGAGGAACCAGATCACAATCGGTGAAAGAATTCCTCAGAGAAATCAGAATCGATGGAAAGAGGAGAAGAAACAGTTCTTTTTCCTTTGTGTCTAGCACTCTTGCGAGTGGTTATAGGGGAGTACTTCTGTGATTTAGCCATGAGGAAAATTTCAAGATAGGAGAAATAGGAATTTTATGAAGAGTGAAGAAAGAAAAGGGACAAATATGGCAATTCAAGGGTTTGTGATGGGAAAGGACAAGACAGCAAAAAGGCATAATGATGATTATGGAAAGACGAGAGAAGGCAGCAAATAGGAAGAGTTCTTACAGAAAAGAGGGAAACGAATAATGAACTCACATTGAAAACATAAGGAAAGATACAGTCATTAATAAAAAAAAATCTAAAATAATTCCAAGAGATTCTCTGAGAGTGCAAAATCTTTCTTCAAGCAAGGGTCTTGTAAAAATATCAGCCAATTAAAATTCAGTGCTCACAAAAGAAAGTAAAGCATCACCGTTTATGATATGATCTCAAATAAAATGATGCGTATGCTTGGCCCTAGAATGATGGACGGGAGTTTTAGTCAGGCAAATAGCACTAGAACTTGAACTGGTTTAAAAGACAACTCCTAATTTTTAGTTGAGCATTATAGAATTCTCAGTGATAATTGAGTAAATGGATGTTTCACTAATAATATATCCTTCTCCATTTGTGAATATGCCTTCCTCTTTCGGACCAGTTGTATTCCAATTTATCTTTGTTCTTGATCCATTACTTTCTTGGAAGATTTTTGACCTTTCTTGCTGATATCATTCTTATCCTGCTGCTTCAAATTACTAATTTTTTGGATAAGCTGCTTTAAAGTAACATTTGTTATTTTAGGACAGTTGATTTTTCTAAACTTCTTCTATATTACTCCTAACCTTTTAGGAGTGGCTTATAATTTTTGTGATATATTTACGTACTTCCGAAATCCTTTCATATTCAATGGGCTTTAGTGACCTAAATATGTTGTTTTACACGAATTGCCTGTTTGACAGATGATGCATTTTCTAGTGATTGATAAAAAATATGTTTCTCCAACTATCTTGGTGATTGTTTTTCGTTTTCCTATAGAAATTTCTCTCGTATCAGTGGCTAGAGGACAGCTTAATACAAGGAGAAAAAGCATCTGAGGATCTGTATGTCTTATCCCTGCAATCAGGAGGAGGAAAGTCCCTTAGTCCTAAAGCTGATAATGACGGTCATTCTGATAATGACGGTCATTCTAGAGTTGCACTAAAGAAAAGTCGAATATCTGCTGAAGATGCCAAGAATTCATGCCCAAGACACGTTAATGACAATAAAGACCGTGTTGATCCACGAGATACTAAAAGTGCCTCTTTACTTGCATCACACTCTTCAAGCCCAGAAGTGACAAGTCCAGAGGCCATTCATTCTCTT</genome_strand>
        <mrna_strand>TTGAATCTCCGCCGCGTGATCCTAATGGAATGTTTTCCGGTATGGTTGTCTTCTTTGTCGGAACCGGAGTTATGTCCCTCCGGCTACAG........................................................................................ATATGGAAGAGGAAATTGTTGCAAATGGGGGCTATATTTAACGACCGGTTTACTGGAAATGTAACTCATGTTTTTGCAAAGGATGCAAATTTGCTTCTTGAGAAATTTGATAAAGAACTTCTGATTCGCACCAAAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTCTCTCGTATCAGTGGCTAGAGGACAGCTTAATACAAGGAGAAAAAGCATCTGAGGATCTGTATGTCTTATCCCTGCAATCAGGAGGAGGAAAGTCCCTTAGTCCTAAAGCTGATAATGACGGTCATTCTGATAATGACGGTCATTCTAGAGTTGCACTAAAGAAAAGTCGAATATCTGCTGAAGATGCCAAGAATTCATGCCCAAGACACGTTAATGACAATAAAGACCGTGTTGATCCACGAGATACTAAAAGTGCCTCTTTACTTGCATCACACTCTTCAAGCCCAGAAGTGACAAGTCCAGAGGCCATTCATTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585074" ref_strand="+" ref_description="SGN-E585074 [66792]">
      <seq>tttctctgtagctgtttatcaagaagccccaattcttaattttagcaaaaaggggtaaagctgatgattttacagcactcaatttcaatttgtaaactatggaggttgtcatctccaccaaacctcttcttgttccgaccttctgttgcttaccaaccacagtgttgtcggattagagcatttgggtctgctgtttcagcctctaaagttgctgaaacaaatacaaatgagacattttttgctgaagaaagtgtttcttggacctctttgggtgtgtctgaatcgttatctcgtgctttatctagtattggccttgatagaccctctttaattcaggcagcttgtataccaagtatactttcaggtgttgatgtggtggttgctgcagagactggtagcggcaagactcatggttacctagtgccgttgattgataagctatgccaaatatctgatagttcaggggctattgctggtcaggatgtcaggaagcacaatcgtctttctcttgtgctttgccctaatgttatgttatgtgagcaagtggttcgaatggctaatagtctttgcaatgatagtggtacaccacttctcagtattgcagctgtttgtggccgacaggtctggcctgtaaaagaaccagatgtaatggtgtctactccggcagcacttctaaattatctctattctattgacccagaaaggcgaagacgttcagaatttatacgtagtgttaaatatgtggtttttgacgaggcagatatgctgctttgtggaagtttccagaaccaagtggtccgacttataaatatgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="44258" stop="47506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44558" g_stop="44896" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44897" i_stop="46470" i_length="1574">
            <donor d_prob="0.984" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46471" g_stop="46755" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="621" r_length="285" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46756" i_stop="46927" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46928" g_stop="47050" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="744" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47051" i_stop="47133" i_length="83">
            <donor d_prob="0.335" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47134" g_stop="47206" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="817" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E585074" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44558" e_stop="44896"/>
          <exon e_start="46471" e_stop="46755"/>
          <exon e_start="46928" e_stop="47050"/>
          <exon e_start="47134" e_stop="47206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTGTAGCTGTTTATAAAGAAGCCCCAAATTCTTAATTTTAGCTAAAAAGGGGTTAAAGCTGATGATTTTACAGCATTCAATTTCAATTTGTAAGCTATGGAGGTCGTCATCTCCACCAAACCTCTATTTGTTTCGACCCTTTGTTGCTTATCAACCACACTGTTGTAGGATTAGAGCATTTGGGTCTGCTGTTTCAGCCTCTAAAGTTGTTGAAACAAATACAAATGAGACATTTTTTGCTGAAGAAAGTGTTTCTTGGACCTCTTTGGGTGTGTCTGAATCATTATCTCGTGCTTTATCTAGCAGTGGCCTTCATAGACCATCTTTAATTCAGGTATTTTGTATTTCCTTTCTGTTAAATTTTGGTCATTACAGGAAATTGTGATTAAAGATTGAATCTTTTTGGTTTCTTTGATTGAATATGAACTCATTAAACTGCGTTATGCTGATAATATCTTATACATTGCATTCCGGAGTAGATATTTCTGGTAAAATTTTGCCTACTATAAAAGTTTGTGACTAAAGGTTGAATCTTTTTGGTTTCTTCGATTGAATATGAACTCCTTAAATTGTGGTGATAATATCTTATATATTGCATTACTGAGTAGGTACCAGTCCTATGTTGCTCGGACTCTTCAACAAAATGTGTGGGTGCCGGATACTCCAAAAGTAGGCATTTTGGAGAATCTGACACTGTGTGTGGCAACAATTTTGGAGAGTCTGGAGCAACATAGGGTACCACTTTCTTCTTATTGTCTGTTGGTAAGATTTCTTACATGATTTAATCTTATTTTTAAAACTATATTAGATTCTGCGATAAGTGCCTAATTTGAATTAAATGAGGGCCTGGTAAGCAATTTGCTCTATTGAGGTCCAAGTATTCTAAGGATTTGTTATTGTTAGACTATTTTTACCCATCAAAGATTGCATCACTCCTCCTTCATTTGAGTTCGTGACCAGGTCTTCTTTTGGAAGCTCACATAGGTGAAATTTTTGATGAGTGGTGCATAAAAAGAAACTTTTTAGAAAATATCTAACAAATTCTCAGTGCATGATCAATATTAATCAAGTCATCTAATAATCACTTATACCAATAATCAAAATCACTTTCAGAATCTGAATCACTTAAGTATTTGATCATTAGCACTCCTTTAATCTGAACCAAACGGGCTATTTGGTTGAATGTGCTGTTATTTGTGGATTTTGCAGCACATTAGTATGTATGAAGAGGGAAGTGAAATCATGTCTTCAAATATGCACACGGAGCTCATTTAGTGATCTTCATTCTAGACTTGTAGTTCTGTGGGTACATGTGGTAGGCTTGGTCGCCAATATGGACATGCTATGGAAGTTTCACTGAGAGGTCGCAATGGATTGAGTTAGCTGGAGAAAGTCGTGTATAAACTCTACAATCCTCAAGTATCTAATTTGAATAGTTCAACTGTCCAAAGACCAAGTAGCTAGACAAAACTGAATTATGTTTTGTTCAAGACGCCATGTTTACTTCTCTCTGTATTAGAGTTCTTGCCCCGTACGTGTTCTTTCTTGTAGGGTCTAAATTTGTGTGATGTAAAGATAAAAATTTGTTTCTAATGTATCATATCCTTTTTTTTTTTTTTTGAAACTGGTAACATTGTATCATATCCTTTTCTTGGAGACACATTTCATCTTTTTGCATAAGAGCGGAGTCACAACTCATATGAAATGACCGCAAGCCCCTCTCCCTAGAGTCAGAAATGACCTTTGTCCCACTTTGCTCCCTTGGTGACTCAAAGTTTCAACTTCTTGCAGAATATCCACCATGTGAATTTTTAGCTTATGTATTATTTTAGTTTTCATCGGGATATATCTTTCAATATTGGTTGTAGTGTTAATCTTAATAGTAATGATATGTAATCATAAATTCAGGCAGCTTGTATACCAAGTATACTTTCAGGTGTTGATGTGGTGGTTGCTGCAGAGACTGGTAGCGGCAAGACTCATGGTTACCTAGTGCCACTGATTGATAAGCTATGCCAAATATCTGATAGTTCAGGGGCTATTACTGGCCAGGATGCCAGGAAGCACAATCGTCTTTCGCTTGTTCTTTGTCCTAATGTTATGTTATGTGAGCAAGTGGTTCGAATGGCTAATAGTCTTTGCAATGATAGTGGTACACCACTTCTCAGTATTGCAGCTGTTTGTGGCCGACAGGTGAGCATTCTCATCGTGATTGTTTATCCTTGTTTACCTGTGAACACTGGTTCTTTCTTGCTGTGGATCAGAGTGTTTTTTTTTTTTTTGCATGATGACGTTGCTATGAATGTTCATTCTGCTTTTCCTCATAAACTTGCAATGTCTCTAACAAATGAGAAATTTAATGCAGGTCTGGCCTGTAAAAGAACCAGATGTAATGGTGTCTACTCCGGCAGCACTTCTAAATTATCTCTATTCTATAGACCCAGAAAGGCGAAGACGTTCAGAGTTTATACGAAGTGTTAAATATGTGGTAATATTTCTGGAGTTATTTAGATTTGGTTATGAGAAAGTGATTTCCCAATATTCATTCTTAGTTATTTTGGCGGTTTGTAGGTTTTTGATGAGGCAGATATGCTGCTTTGTGGAAGTTTCCAGAACCAAGTGGTCCGACTTATAAATATGCTTC</genome_strand>
        <mrna_strand>TTTCTCTGTAGCTGTTTATCAAGAAGCCCC-AATTCTTAATTTTAGC-AAAAAGGGG-TAAAGCTGATGATTTTACAGCACTCAATTTCAATTTGTAAACTATGGAGGTTGTCATCTCCACCAAACCTCTTCTTGTTCCGACCTTCTGTTGCTTACCAACCACAGTGTTGTCGGATTAGAGCATTTGGGTCTGCTGTTTCAGCCTCTAAAGTTGCTGAAACAAATACAAATGAGACATTTTTTGCTGAAGAAAGTGTTTCTTGGACCTCTTTGGGTGTGTCTGAATCGTTATCTCGTGCTTTATCTAGTATTGGCCTTGATAGACCCTCTTTAATTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTTGTATACCAAGTATACTTTCAGGTGTTGATGTGGTGGTTGCTGCAGAGACTGGTAGCGGCAAGACTCATGGTTACCTAGTGCCGTTGATTGATAAGCTATGCCAAATATCTGATAGTTCAGGGGCTATTGCTGGTCAGGATGTCAGGAAGCACAATCGTCTTTCTCTTGTGCTTTGCCCTAATGTTATGTTATGTGAGCAAGTGGTTCGAATGGCTAATAGTCTTTGCAATGATAGTGGTACACCACTTCTCAGTATTGCAGCTGTTTGTGGCCGACAG............................................................................................................................................................................GTCTGGCCTGTAAAAGAACCAGATGTAATGGTGTCTACTCCGGCAGCACTTCTAAATTATCTCTATTCTATTGACCCAGAAAGGCGAAGACGTTCAGAATTTATACGTAGTGTTAAATATGTG...................................................................................GTTTTTGACGAGGCAGATATGCTGCTTTGTGGAAGTTTCCAGAACCAAGTGGTCCGACTTATAAATATGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476117" ref_strand="+" ref_description="SGN-E476117 [cSTB-43-K6]">
      <seq>gtttatcaagaagccccaattcttgattttagcaaaaaggggttaaagctgatgatttcacagcactcaatttcaatttgtaagctatggaggttgtcatctccaccaaacctcatcttgttccgaccttctgtagcttaccaaccacactgttgtcggattaaaacatttgggtctgctgtttcagcttccaaagttactgaaacaaatacaaatgagacattttttgctgaagaaagtgtttcttggacatctttgggtgtgtctgaatcattatctcgtgctttatctaatattggccttcatagaccctctttaattcaggcagcttgtataccaagtatactttcaggtgttgatgtggaggttgctgcagagactggtagcggcaagactcatggttacctaacgccattgattgataagctatgccaaatatctgatagttcacgggctattgctggtcaggatgtcatgaagcacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="44271" stop="46932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44571" g_stop="44896" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44897" i_stop="46470" i_length="1574">
            <donor d_prob="0.984" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46471" g_stop="46632" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="486" r_length="162" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E476117" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44571" e_stop="44896"/>
          <exon e_start="46471" e_stop="46632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATAAAGAAGCCCCAAATTCTTAATTTTAGCTAAAAAGGGGTTAAAGCTGATGATTTTACAGCATTCAATTTCAATTTGTAAGCTATGGAGGTCGTCATCTCCACCAAACCTCTATTTGTTTCGACCCTTTGTTGCTTATCAACCACACTGTTGTAGGATTAGAGCATTTGGGTCTGCTGTTTCAGCCTCTAAAGTTGTTGAAACAAATACAAATGAGACATTTTTTGCTGAAGAAAGTGTTTCTTGGACCTCTTTGGGTGTGTCTGAATCATTATCTCGTGCTTTATCTAGCAGTGGCCTTCATAGACCATCTTTAATTCAGGTATTTTGTATTTCCTTTCTGTTAAATTTTGGTCATTACAGGAAATTGTGATTAAAGATTGAATCTTTTTGGTTTCTTTGATTGAATATGAACTCATTAAACTGCGTTATGCTGATAATATCTTATACATTGCATTCCGGAGTAGATATTTCTGGTAAAATTTTGCCTACTATAAAAGTTTGTGACTAAAGGTTGAATCTTTTTGGTTTCTTCGATTGAATATGAACTCCTTAAATTGTGGTGATAATATCTTATATATTGCATTACTGAGTAGGTACCAGTCCTATGTTGCTCGGACTCTTCAACAAAATGTGTGGGTGCCGGATACTCCAAAAGTAGGCATTTTGGAGAATCTGACACTGTGTGTGGCAACAATTTTGGAGAGTCTGGAGCAACATAGGGTACCACTTTCTTCTTATTGTCTGTTGGTAAGATTTCTTACATGATTTAATCTTATTTTTAAAACTATATTAGATTCTGCGATAAGTGCCTAATTTGAATTAAATGAGGGCCTGGTAAGCAATTTGCTCTATTGAGGTCCAAGTATTCTAAGGATTTGTTATTGTTAGACTATTTTTACCCATCAAAGATTGCATCACTCCTCCTTCATTTGAGTTCGTGACCAGGTCTTCTTTTGGAAGCTCACATAGGTGAAATTTTTGATGAGTGGTGCATAAAAAGAAACTTTTTAGAAAATATCTAACAAATTCTCAGTGCATGATCAATATTAATCAAGTCATCTAATAATCACTTATACCAATAATCAAAATCACTTTCAGAATCTGAATCACTTAAGTATTTGATCATTAGCACTCCTTTAATCTGAACCAAACGGGCTATTTGGTTGAATGTGCTGTTATTTGTGGATTTTGCAGCACATTAGTATGTATGAAGAGGGAAGTGAAATCATGTCTTCAAATATGCACACGGAGCTCATTTAGTGATCTTCATTCTAGACTTGTAGTTCTGTGGGTACATGTGGTAGGCTTGGTCGCCAATATGGACATGCTATGGAAGTTTCACTGAGAGGTCGCAATGGATTGAGTTAGCTGGAGAAAGTCGTGTATAAACTCTACAATCCTCAAGTATCTAATTTGAATAGTTCAACTGTCCAAAGACCAAGTAGCTAGACAAAACTGAATTATGTTTTGTTCAAGACGCCATGTTTACTTCTCTCTGTATTAGAGTTCTTGCCCCGTACGTGTTCTTTCTTGTAGGGTCTAAATTTGTGTGATGTAAAGATAAAAATTTGTTTCTAATGTATCATATCCTTTTTTTTTTTTTTTGAAACTGGTAACATTGTATCATATCCTTTTCTTGGAGACACATTTCATCTTTTTGCATAAGAGCGGAGTCACAACTCATATGAAATGACCGCAAGCCCCTCTCCCTAGAGTCAGAAATGACCTTTGTCCCACTTTGCTCCCTTGGTGACTCAAAGTTTCAACTTCTTGCAGAATATCCACCATGTGAATTTTTAGCTTATGTATTATTTTAGTTTTCATCGGGATATATCTTTCAATATTGGTTGTAGTGTTAATCTTAATAGTAATGATATGTAATCATAAATTCAGGCAGCTTGTATACCAAGTATACTTTCAGGTGTTGATGTGGTGGTTGCTGCAGAGACTGGTAGCGGCAAGACTCATGGTTACCTAGTGCCACTGATTGATAAGCTATGCCAAATATCTGATAGTTCAGGGGCTATTACTGGCCAGGATGCCAGGAAGCACAAT</genome_strand>
        <mrna_strand>GTTTATCAAGAAGCCCC-AATTCTTGATTTTAGC-AAAAAGGGGTTAAAGCTGATGATTTCACAGCACTCAATTTCAATTTGTAAGCTATGGAGGTTGTCATCTCCACCAAACCTCATCTTGTTCCGACCTTCTGTAGCTTACCAACCACACTGTTGTCGGATTAAAACATTTGGGTCTGCTGTTTCAGCTTCCAAAGTTACTGAAACAAATACAAATGAGACATTTTTTGCTGAAGAAAGTGTTTCTTGGACATCTTTGGGTGTGTCTGAATCATTATCTCGTGCTTTATCTAATATTGGCCTTCATAGACCCTCTTTAATTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTTGTATACCAAGTATACTTTCAGGTGTTGATGTGGAGGTTGCTGCAGAGACTGGTAGCGGCAAGACTCATGGTTACCTAACGCCATTGATTGATAAGCTATGCCAAATATCTGATAGTTCACGGGCTATTGCTGGTCAGGATGTCATGAAGCACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719746" ref_strand="+" ref_description="SGN-E719746 [FC08DA12]">
      <seq>ttataaagaagccccaaattcttaattttccctaaaaaggggttaaagctgatgattttacagcattcaatttcaatttgtaagctatggaggtcgtcatctccaccaaacctctatttgtttcgaccctttgttgcttatcaaccacactgttgtaggattagagcatttgggtctgctgtttcagcctctaaagttgttgaaacaaatacaaatgagacattttttgctgaagaaagtgtttcttggacctctttgggtgtgtctgaatcattatctcgtgctttatctagcagtggccttcatagaccatctttaattcaggcagcttgtataccaagtatactttcaggtgttgatgtggtggttgctgcaaagactggtagcggcaagactcatggttacctagtgccactgattgataagctatgccaaatatctgatagttcaggggctattactggccaggatgccaggaagcacaatcgtctttcgcttgttctttgtcctaatgttatgttatgtgagcaagtggttcgaatggctaatagtctttgcaatgatagtggtacaccacttctcagtattgcagctgtttgtggccgacaggtctggcctgtaaaagaaccagatgtaatggtgtctactccggcagcacttctaaattatctctattctatagacccagaaaggcgaagacgttcagagtttatacgaagtgttaaatatgtggtttttgatgaggcagatatgctgctttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="44273" stop="47464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44573" g_stop="44896" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44897" i_stop="46470" i_length="1574">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46471" g_stop="46755" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="609" r_length="285" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46756" i_stop="46927" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46928" g_stop="47050" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="732" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47051" i_stop="47133" i_length="83">
            <donor d_prob="0.335" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47134" g_stop="47164" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="763" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E719746" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44573" e_stop="44896"/>
          <exon e_start="46471" e_stop="46755"/>
          <exon e_start="46928" e_stop="47050"/>
          <exon e_start="47134" e_stop="47164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAAAGAAGCCCCAAATTCTTAATTTTAGCTAAAAAGGGGTTAAAGCTGATGATTTTACAGCATTCAATTTCAATTTGTAAGCTATGGAGGTCGTCATCTCCACCAAACCTCTATTTGTTTCGACCCTTTGTTGCTTATCAACCACACTGTTGTAGGATTAGAGCATTTGGGTCTGCTGTTTCAGCCTCTAAAGTTGTTGAAACAAATACAAATGAGACATTTTTTGCTGAAGAAAGTGTTTCTTGGACCTCTTTGGGTGTGTCTGAATCATTATCTCGTGCTTTATCTAGCAGTGGCCTTCATAGACCATCTTTAATTCAGGTATTTTGTATTTCCTTTCTGTTAAATTTTGGTCATTACAGGAAATTGTGATTAAAGATTGAATCTTTTTGGTTTCTTTGATTGAATATGAACTCATTAAACTGCGTTATGCTGATAATATCTTATACATTGCATTCCGGAGTAGATATTTCTGGTAAAATTTTGCCTACTATAAAAGTTTGTGACTAAAGGTTGAATCTTTTTGGTTTCTTCGATTGAATATGAACTCCTTAAATTGTGGTGATAATATCTTATATATTGCATTACTGAGTAGGTACCAGTCCTATGTTGCTCGGACTCTTCAACAAAATGTGTGGGTGCCGGATACTCCAAAAGTAGGCATTTTGGAGAATCTGACACTGTGTGTGGCAACAATTTTGGAGAGTCTGGAGCAACATAGGGTACCACTTTCTTCTTATTGTCTGTTGGTAAGATTTCTTACATGATTTAATCTTATTTTTAAAACTATATTAGATTCTGCGATAAGTGCCTAATTTGAATTAAATGAGGGCCTGGTAAGCAATTTGCTCTATTGAGGTCCAAGTATTCTAAGGATTTGTTATTGTTAGACTATTTTTACCCATCAAAGATTGCATCACTCCTCCTTCATTTGAGTTCGTGACCAGGTCTTCTTTTGGAAGCTCACATAGGTGAAATTTTTGATGAGTGGTGCATAAAAAGAAACTTTTTAGAAAATATCTAACAAATTCTCAGTGCATGATCAATATTAATCAAGTCATCTAATAATCACTTATACCAATAATCAAAATCACTTTCAGAATCTGAATCACTTAAGTATTTGATCATTAGCACTCCTTTAATCTGAACCAAACGGGCTATTTGGTTGAATGTGCTGTTATTTGTGGATTTTGCAGCACATTAGTATGTATGAAGAGGGAAGTGAAATCATGTCTTCAAATATGCACACGGAGCTCATTTAGTGATCTTCATTCTAGACTTGTAGTTCTGTGGGTACATGTGGTAGGCTTGGTCGCCAATATGGACATGCTATGGAAGTTTCACTGAGAGGTCGCAATGGATTGAGTTAGCTGGAGAAAGTCGTGTATAAACTCTACAATCCTCAAGTATCTAATTTGAATAGTTCAACTGTCCAAAGACCAAGTAGCTAGACAAAACTGAATTATGTTTTGTTCAAGACGCCATGTTTACTTCTCTCTGTATTAGAGTTCTTGCCCCGTACGTGTTCTTTCTTGTAGGGTCTAAATTTGTGTGATGTAAAGATAAAAATTTGTTTCTAATGTATCATATCCTTTTTTTTTTTTTTTGAAACTGGTAACATTGTATCATATCCTTTTCTTGGAGACACATTTCATCTTTTTGCATAAGAGCGGAGTCACAACTCATATGAAATGACCGCAAGCCCCTCTCCCTAGAGTCAGAAATGACCTTTGTCCCACTTTGCTCCCTTGGTGACTCAAAGTTTCAACTTCTTGCAGAATATCCACCATGTGAATTTTTAGCTTATGTATTATTTTAGTTTTCATCGGGATATATCTTTCAATATTGGTTGTAGTGTTAATCTTAATAGTAATGATATGTAATCATAAATTCAGGCAGCTTGTATACCAAGTATACTTTCAGGTGTTGATGTGGTGGTTGCTGCAGAGACTGGTAGCGGCAAGACTCATGGTTACCTAGTGCCACTGATTGATAAGCTATGCCAAATATCTGATAGTTCAGGGGCTATTACTGGCCAGGATGCCAGGAAGCACAATCGTCTTTCGCTTGTTCTTTGTCCTAATGTTATGTTATGTGAGCAAGTGGTTCGAATGGCTAATAGTCTTTGCAATGATAGTGGTACACCACTTCTCAGTATTGCAGCTGTTTGTGGCCGACAGGTGAGCATTCTCATCGTGATTGTTTATCCTTGTTTACCTGTGAACACTGGTTCTTTCTTGCTGTGGATCAGAGTGTTTTTTTTTTTTTTGCATGATGACGTTGCTATGAATGTTCATTCTGCTTTTCCTCATAAACTTGCAATGTCTCTAACAAATGAGAAATTTAATGCAGGTCTGGCCTGTAAAAGAACCAGATGTAATGGTGTCTACTCCGGCAGCACTTCTAAATTATCTCTATTCTATAGACCCAGAAAGGCGAAGACGTTCAGAGTTTATACGAAGTGTTAAATATGTGGTAATATTTCTGGAGTTATTTAGATTTGGTTATGAGAAAGTGATTTCCCAATATTCATTCTTAGTTATTTTGGCGGTTTGTAGGTTTTTGATGAGGCAGATATGCTGCTTTGTG</genome_strand>
        <mrna_strand>TTATAAAGAAGCCCCAAATTCTTAATTTTCCCTAAAAAGGGGTTAAAGCTGATGATTTTACAGCATTCAATTTCAATTTGTAAGCTATGGAGGTCGTCATCTCCACCAAACCTCTATTTGTTTCGACCCTTTGTTGCTTATCAACCACACTGTTGTAGGATTAGAGCATTTGGGTCTGCTGTTTCAGCCTCTAAAGTTGTTGAAACAAATACAAATGAGACATTTTTTGCTGAAGAAAGTGTTTCTTGGACCTCTTTGGGTGTGTCTGAATCATTATCTCGTGCTTTATCTAGCAGTGGCCTTCATAGACCATCTTTAATTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTTGTATACCAAGTATACTTTCAGGTGTTGATGTGGTGGTTGCTGCAAAGACTGGTAGCGGCAAGACTCATGGTTACCTAGTGCCACTGATTGATAAGCTATGCCAAATATCTGATAGTTCAGGGGCTATTACTGGCCAGGATGCCAGGAAGCACAATCGTCTTTCGCTTGTTCTTTGTCCTAATGTTATGTTATGTGAGCAAGTGGTTCGAATGGCTAATAGTCTTTGCAATGATAGTGGTACACCACTTCTCAGTATTGCAGCTGTTTGTGGCCGACAG............................................................................................................................................................................GTCTGGCCTGTAAAAGAACCAGATGTAATGGTGTCTACTCCGGCAGCACTTCTAAATTATCTCTATTCTATAGACCCAGAAAGGCGAAGACGTTCAGAGTTTATACGAAGTGTTAAATATGTG...................................................................................GTTTTTGATGAGGCAGATATGCTGCTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267270" ref_strand="+" ref_description="SGN-E267270 [cLEI-4-D18]">
      <seq>aagccccaaattcttaattttagctaaaaaggggttaaagctgatgattttacagcattcaatttcaatttgtaagctatggaggtcgtcatctccaccaaacctctatttgtttcgaccctttgttgcttatcaaccacactgttgtaggattagagcatttgggtctgctgtttcagcctctaaagttgttgaaacaaatacaaatgagacattttttgctgaagaaagtgtttcttggacctctttgggtgtgtctgaatcattatctcgtgctttatctagcagtggccttcatagaccatctttaattcaggcagcttgtataccaagtatactttcaggtgttgatgtggtggttgctgcanagactggtagcggcaagactcatggttacctagtgccactgattgataagctatgccaaatatctgatagttcaggggctattactggccaagatgccaggaagcacaatcgtctttcgcttgttctttgtcctaatgttatgttatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="44281" stop="46972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44581" g_stop="44896" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44897" i_stop="46470" i_length="1574">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46471" g_stop="46672" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="518" r_length="202" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E267270" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44581" e_stop="44896"/>
          <exon e_start="46471" e_stop="46672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCCCAAATTCTTAATTTTAGCTAAAAAGGGGTTAAAGCTGATGATTTTACAGCATTCAATTTCAATTTGTAAGCTATGGAGGTCGTCATCTCCACCAAACCTCTATTTGTTTCGACCCTTTGTTGCTTATCAACCACACTGTTGTAGGATTAGAGCATTTGGGTCTGCTGTTTCAGCCTCTAAAGTTGTTGAAACAAATACAAATGAGACATTTTTTGCTGAAGAAAGTGTTTCTTGGACCTCTTTGGGTGTGTCTGAATCATTATCTCGTGCTTTATCTAGCAGTGGCCTTCATAGACCATCTTTAATTCAGGTATTTTGTATTTCCTTTCTGTTAAATTTTGGTCATTACAGGAAATTGTGATTAAAGATTGAATCTTTTTGGTTTCTTTGATTGAATATGAACTCATTAAACTGCGTTATGCTGATAATATCTTATACATTGCATTCCGGAGTAGATATTTCTGGTAAAATTTTGCCTACTATAAAAGTTTGTGACTAAAGGTTGAATCTTTTTGGTTTCTTCGATTGAATATGAACTCCTTAAATTGTGGTGATAATATCTTATATATTGCATTACTGAGTAGGTACCAGTCCTATGTTGCTCGGACTCTTCAACAAAATGTGTGGGTGCCGGATACTCCAAAAGTAGGCATTTTGGAGAATCTGACACTGTGTGTGGCAACAATTTTGGAGAGTCTGGAGCAACATAGGGTACCACTTTCTTCTTATTGTCTGTTGGTAAGATTTCTTACATGATTTAATCTTATTTTTAAAACTATATTAGATTCTGCGATAAGTGCCTAATTTGAATTAAATGAGGGCCTGGTAAGCAATTTGCTCTATTGAGGTCCAAGTATTCTAAGGATTTGTTATTGTTAGACTATTTTTACCCATCAAAGATTGCATCACTCCTCCTTCATTTGAGTTCGTGACCAGGTCTTCTTTTGGAAGCTCACATAGGTGAAATTTTTGATGAGTGGTGCATAAAAAGAAACTTTTTAGAAAATATCTAACAAATTCTCAGTGCATGATCAATATTAATCAAGTCATCTAATAATCACTTATACCAATAATCAAAATCACTTTCAGAATCTGAATCACTTAAGTATTTGATCATTAGCACTCCTTTAATCTGAACCAAACGGGCTATTTGGTTGAATGTGCTGTTATTTGTGGATTTTGCAGCACATTAGTATGTATGAAGAGGGAAGTGAAATCATGTCTTCAAATATGCACACGGAGCTCATTTAGTGATCTTCATTCTAGACTTGTAGTTCTGTGGGTACATGTGGTAGGCTTGGTCGCCAATATGGACATGCTATGGAAGTTTCACTGAGAGGTCGCAATGGATTGAGTTAGCTGGAGAAAGTCGTGTATAAACTCTACAATCCTCAAGTATCTAATTTGAATAGTTCAACTGTCCAAAGACCAAGTAGCTAGACAAAACTGAATTATGTTTTGTTCAAGACGCCATGTTTACTTCTCTCTGTATTAGAGTTCTTGCCCCGTACGTGTTCTTTCTTGTAGGGTCTAAATTTGTGTGATGTAAAGATAAAAATTTGTTTCTAATGTATCATATCCTTTTTTTTTTTTTTTGAAACTGGTAACATTGTATCATATCCTTTTCTTGGAGACACATTTCATCTTTTTGCATAAGAGCGGAGTCACAACTCATATGAAATGACCGCAAGCCCCTCTCCCTAGAGTCAGAAATGACCTTTGTCCCACTTTGCTCCCTTGGTGACTCAAAGTTTCAACTTCTTGCAGAATATCCACCATGTGAATTTTTAGCTTATGTATTATTTTAGTTTTCATCGGGATATATCTTTCAATATTGGTTGTAGTGTTAATCTTAATAGTAATGATATGTAATCATAAATTCAGGCAGCTTGTATACCAAGTATACTTTCAGGTGTTGATGTGGTGGTTGCTGCAGAGACTGGTAGCGGCAAGACTCATGGTTACCTAGTGCCACTGATTGATAAGCTATGCCAAATATCTGATAGTTCAGGGGCTATTACTGGCCAGGATGCCAGGAAGCACAATCGTCTTTCGCTTGTTCTTTGTCCTAATGTTATGTTATGTG</genome_strand>
        <mrna_strand>AAGCCCCAAATTCTTAATTTTAGCTAAAAAGGGGTTAAAGCTGATGATTTTACAGCATTCAATTTCAATTTGTAAGCTATGGAGGTCGTCATCTCCACCAAACCTCTATTTGTTTCGACCCTTTGTTGCTTATCAACCACACTGTTGTAGGATTAGAGCATTTGGGTCTGCTGTTTCAGCCTCTAAAGTTGTTGAAACAAATACAAATGAGACATTTTTTGCTGAAGAAAGTGTTTCTTGGACCTCTTTGGGTGTGTCTGAATCATTATCTCGTGCTTTATCTAGCAGTGGCCTTCATAGACCATCTTTAATTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTTGTATACCAAGTATACTTTCAGGTGTTGATGTGGTGGTTGCTGCANAGACTGGTAGCGGCAAGACTCATGGTTACCTAGTGCCACTGATTGATAAGCTATGCCAAATATCTGATAGTTCAGGGGCTATTACTGGCCAAGATGCCAGGAAGCACAATCGTCTTTCGCTTGTTCTTTGTCCTAATGTTATGTTATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412555" ref_strand="+" ref_description="SGN-E412555 [STM-16-O22]">
      <seq>ttaaatatgtggtttttgacgaggcagatatgctgctttgtggaagtttccagaatcaagtggtccgacttataaatatgcttcgctttgatgagaagcagttatctcgttctaaaaactctggagctgagatgtcatcaacttcagacttggaagagtttagggacctaaaagcagattatggtgaagatgcagatgaagatgaagatgaagatgaggatgaagatactgaagttggcgaagataaagcaaatctagaaacagataccaaggggttaaagagaagagattggcgaagagtgagaaaaatatatgagcggagcaagcagtacatttttgttgcagctacccttcctgaaaatgggaagagaactgctggaggagttttgaagcggatgtttcctgaagctacctgggttagtggaaattatcttcatcagcacagcccgaggttggagcagaggtggattgaagtttcagttgacacccaagtggacattctcataaatgctgtggaaaatgggaagtctatggcagatagtgttcctggagtgctccgaaccatggtctttgcaaataccgttgacgctgtggaagctgttgctaatatcttgacaggagctggacttgaatgtttccgctaccatagtgatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="46827" stop="48443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47040" g_stop="47050" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47051" i_stop="47133" i_length="83">
            <donor d_prob="0.335" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47134" g_stop="47579" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="451" r_length="440" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47580" i_stop="47938" i_length="359">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47939" g_stop="48143" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="656" r_length="205" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E412555" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47040" e_stop="47050"/>
          <exon e_start="47134" e_stop="47579"/>
          <exon e_start="47939" e_stop="48143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATATGTGGTAATATTTCTGGAGTTATTTAGATTTGGTTATGAGAAAGTGATTTCCCAATATTCATTCTTAGTTATTTTGGCGGTTTGTAGGTTTTTGATGAGGCAGATATGCTGCTTTGTGGAAGTTTCCAGAACCAAGTGGTCCGACTTATAAATATGCTTCGTTTTGATGAGAAGCAGTTATCTCGTTCTAAAAATTCTGGAGCTGAGATGTCATCTACTTCAGACTTGGAAGAGTTTAGGGACCTAAAAGCAGATTATGGTGAAGATGCAGATGAAGTTGAAGATGAAGATGAAGATGAGGATGAAGATACTGAAGTTGGCAAAGATAGAGCAAATCTAGAAACAGATACCAAGGGGCTAAAGAGAAGAGATTGGCGAAGAGTGAGAAAGATATATGAGCGGAGCAAGCAGTACATTTTTGTTGCAGCGACCCTTCCTGAAAATGGGAAGAGAACTGCTGGAGGAGTGTTGAAGCGGATGTTTCCTGAAGCTACCTGGGTTAGTGGAAATTATCTTCATCAGCACAGCCCGAGGTGCCACTTTTTTCTTTAGTCCATAATTTGTTTCTTTAAAGTATTCCTTGGGGGAGGGAGGTAATGCTGACAGAATGGATAAAATTTTCAAGTATTTGTCCATCCCTCACTTAAAAACAGGTTGGAAAATTGATTTACTAGGATCAGATCAAATATGGATTAATCAATATAACCAATCATGGAAAAGGGTAGAGTATGCATGTCCATATTATCCATGCTTCTCTGCAAATAATCCTCTGGATATCCAAGTTCTTCTTTTTGCGGTATCAGTACTTAAGTTCAATGGCTATCCTTGTAATAATTTTCTGAGGAGCATTTTAACTAGTATGGCTTTTATCTCCTCCCTGCTGTCACTTTAGGTTGGAGCAAAGGTGGATTGAAGTTTCAGTTGACACCCAAGTGGACATTCTCATAAATGCTGTGGAAAATGGGAATTCTATGGCAGATAGTAGTCCTGGAGTGCTCCGAACCATGGTCTTTGCAAATACTGTTGACGCTGTGGAAGCTGTTGCTAATATCTTGACAAGAGTTGGACTTGAATGTTTCCGTTACCATAGTGATAGC</genome_strand>
        <mrna_strand>TTAAATATGTG...................................................................................GTTTTTGACGAGGCAGATATGCTGCTTTGTGGAAGTTTCCAGAATCAAGTGGTCCGACTTATAAATATGCTTCGCTTTGATGAGAAGCAGTTATCTCGTTCTAAAAACTCTGGAGCTGAGATGTCATCAACTTCAGACTTGGAAGAGTTTAGGGACCTAAAAGCAGATTATGGTGAAGATGC--A-G-A--TGAAGATGAAGATGAAGATGAGGATGAAGATACTGAAGTTGGCGAAGATAAAGCAAATCTAGAAACAGATACCAAGGGGTTAAAGAGAAGAGATTGGCGAAGAGTGAGAAAAATATATGAGCGGAGCAAGCAGTACATTTTTGTTGCAGCTACCCTTCCTGAAAATGGGAAGAGAACTGCTGGAGGAGTTTTGAAGCGGATGTTTCCTGAAGCTACCTGGGTTAGTGGAAATTATCTTCATCAGCACAGCCCGAG.......................................................................................................................................................................................................................................................................................................................................................................GTTGGAGCAGAGGTGGATTGAAGTTTCAGTTGACACCCAAGTGGACATTCTCATAAATGCTGTGGAAAATGGGAAGTCTATGGCAGATAGTGTTCCTGGAGTGCTCCGAACCATGGTCTTTGCAAATACCGTTGACGCTGTGGAAGCTGTTGCTAATATCTTGACAGGAGCTGGACTTGAATGTTTCCGCTACCATAGTGATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470824" ref_strand="+" ref_description="SGN-E470824 [cSTB-20-N1]">
      <seq>ttaaatatgtggtttttgacgaggcagatatgctgctttgtggaagtttccagaatcaagtggtccgacttataaatatgcttcgctttgatgagaagcagttatctcgttctaaaaactctggagctgagatgtcatcaacttcagacttggaagagtttagggacctaaaagcagattatggtgaagatgcagatgaagatgaagatgaagatgaggatgaagatactgaagttggcgaagataaagcaaatctagaaacagataccaaggggttaaagagaagagattggcgaagagtgagaaaaatatatgagcggagcaagcagtacatttttgttgcagctacccttcctgaaaatgggaagagaactgctggaggagttttgaagcggatgtttcctgaagctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="46827" stop="47840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47040" g_stop="47050" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47051" i_stop="47133" i_length="83">
            <donor d_prob="0.335" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47134" g_stop="47540" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="412" r_length="401" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E470824" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47040" e_stop="47050"/>
          <exon e_start="47134" e_stop="47540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATATGTGGTAATATTTCTGGAGTTATTTAGATTTGGTTATGAGAAAGTGATTTCCCAATATTCATTCTTAGTTATTTTGGCGGTTTGTAGGTTTTTGATGAGGCAGATATGCTGCTTTGTGGAAGTTTCCAGAACCAAGTGGTCCGACTTATAAATATGCTTCGTTTTGATGAGAAGCAGTTATCTCGTTCTAAAAATTCTGGAGCTGAGATGTCATCTACTTCAGACTTGGAAGAGTTTAGGGACCTAAAAGCAGATTATGGTGAAGATGCAGATGAAGTTGAAGATGAAGATGAAGATGAGGATGAAGATACTGAAGTTGGCAAAGATAGAGCAAATCTAGAAACAGATACCAAGGGGCTAAAGAGAAGAGATTGGCGAAGAGTGAGAAAGATATATGAGCGGAGCAAGCAGTACATTTTTGTTGCAGCGACCCTTCCTGAAAATGGGAAGAGAACTGCTGGAGGAGTGTTGAAGCGGATGTTTCCTGAAGCTAC</genome_strand>
        <mrna_strand>TTAAATATGTG...................................................................................GTTTTTGACGAGGCAGATATGCTGCTTTGTGGAAGTTTCCAGAATCAAGTGGTCCGACTTATAAATATGCTTCGCTTTGATGAGAAGCAGTTATCTCGTTCTAAAAACTCTGGAGCTGAGATGTCATCAACTTCAGACTTGGAAGAGTTTAGGGACCTAAAAGCAGATTATGGTGAAGATGC--A-G-A--TGAAGATGAAGATGAAGATGAGGATGAAGATACTGAAGTTGGCGAAGATAAAGCAAATCTAGAAACAGATACCAAGGGGTTAAAGAGAAGAGATTGGCGAAGAGTGAGAAAAATATATGAGCGGAGCAAGCAGTACATTTTTGTTGCAGCTACCCTTCCTGAAAATGGGAAGAGAACTGCTGGAGGAGTTTTGAAGCGGATGTTTCCTGAAGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559709" ref_strand="-" ref_description="SGN-E559709 [19249]">
      <seq>cccaagtggacattctcataaatgctgtggaaaatgggaagtctatgccagatagtgttcctggagtgctccgaaccatggtctttgcaaataccgttgacgctgtggaagctgttgctaatatcttgacaggagctggacttgaatgtttccgctaccatagtgatagctctttggaggagcgcacaaagaatttacttgatttccaacagaaaggtggtgtttttgtgtgcacagatgctgcagcacgtggtattgatattccaaatgtttcacatgttattcaggcagagtttgctacgtctgctgtagatttcttgcacagggttggacgtacagctagagcaggccaacctggcctagttacgagtctatattcagaatcaaaccgtgatcttgttgctgccattcgtcatgcagaaaaaattgaagagccagtggagaaagcatttagcagaaaaaggagctttcgcaataaaatcaagaaaagaggcagagaagcttcctaccacatgaggtgaaaatgtgattttgtcttgggagtgagtttctatttgcatttgtttctccacactgtttgtattttagagtgttaattgtaatatcccttgaatgtaaaagaaattaattagttcagagtatttaatatgaaagttaacacatttcccagtcatgaagtgaagttgaatataaagaccacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="47674" stop="49663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47974" g_stop="48260" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48261" i_stop="48581" i_length="321">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48582" g_stop="48734" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="440" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48735" i_stop="49091" i_length="357">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49092" g_stop="49363" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="703" r_length="263" r_score="0.838"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E559709" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559709" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47974" e_stop="48260"/>
          <exon e_start="48582" e_stop="48734"/>
          <exon e_start="49092" e_stop="49363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGTGGACATTCTCATAAATGCTGTGGAAAATGGGAATTCTATGGCAGATAGTAGTCCTGGAGTGCTCCGAACCATGGTCTTTGCAAATACTGTTGACGCTGTGGAAGCTGTTGCTAATATCTTGACAAGAGTTGGACTTGAATGTTTCCGTTACCATAGTGATAGCTCTTTGGAGGAGCGCACAAAGAATTTACTTGATTTCCAACAGAAAGGTGGTGTTTTTGTGTGCACGGATGCTGCAGCACGTGGTATTGACATTCCAAATGTTTCACATGTTATTCAGGTTTGTTTTCTTAAGTAAATACGTTGTTCTTATCTCAATCAGTTTCTGGTTGTTCTTTGATGCCTAATATTTTGGTTTAATTTATTAAAAAGTAGAACAGAGTCGTTTTTCTTTATGCTTTGTACCCAATACACCTTATTATGTCTCATTCACTAAAGAACATTTCTGCATTTTACTGCATTGCTGGGTTAATTGGCTACTTGTACATTGATTTTATTAGCGGAGTTACTTAACTTGTGATGCCTTTATTGGCCTTGTAGTTCCGTATGCATCTATATTGACGTGTTTTTACACTCAATTGTTTTCCCCTCCTCATTGTAGGCAGAGTTTGCCACATCTGCTGTAGATTTCTTGCACAGGGTTGGACGTACAGCTAGAGCAGGCCAACCTGGCCTTGTTACGAGTCTATATTCAGAATCAAACCGTGATCTAGTTGCTGCCATTCGTCATGCAGAAAAAATTGAAGAGCCAGTGGTACGTTCTATATCTTAAAACGCTTTAAGATAGTGACCTAAAGAAGCCTATGTCAGACTAGCCACATAGTTACCAACGCATAAATTTCATATCTTTTAGTGATAGAAGCGTTTGTTTGATTCTAGCGGTGAAATAGAGTCCTTTCAGGTCAGCTTGTAATTAGCTGATAAGCTTAAAGTGCTTGAAGTAGAAATGCTGAACCTGTTAATAAGCAGTTATCGATTGATTTCTAATGTTCTCGACACCTGCAAAAGTTGCTTATAACTTATCGACTTCAATTTCTCAACGGATTCTTTATGTAATCATCTTGAAGAGAACTAGTTCTGTTGTTATATTAAGATTGATATGTTTCCACAGGAGAAAGCATTTAGCAGAAAAAGGAGTTTTCGCAATAAAATCAAGAAAAGAGGCAGAGAAGCTT-C-A-CACATGAGGTGAAAAATGTGAATTTTGACTTGGGACTTGGGAGTGAGTTTCTATTTGCATTTGTTTTCTCCACACTGTTTGTATTTTATAGTGTT-ATTGTAATA-----T-ACTGTAAAAGAAATTAATTAGTTCAGAGTATTTAATATGAAAGTTCACACATTTTCCCAGTCTCTTAATCATGAAGTGAAGTTGAATATAAAGATCACACA</genome_strand>
        <mrna_strand>CCCAAGTGGACATTCTCATAAATGCTGTGGAAAATGGGAAGTCTATGCCAGATAGTGTTCCTGGAGTGCTCCGAACCATGGTCTTTGCAAATACCGTTGACGCTGTGGAAGCTGTTGCTAATATCTTGACAGGAGCTGGACTTGAATGTTTCCGCTACCATAGTGATAGCTCTTTGGAGGAGCGCACAAAGAATTTACTTGATTTCCAACAGAAAGGTGGTGTTTTTGTGTGCACAGATGCTGCAGCACGTGGTATTGATATTCCAAATGTTTCACATGTTATTCAG.................................................................................................................................................................................................................................................................................................................................GCAGAGTTTGCTACGTCTGCTGTAGATTTCTTGCACAGGGTTGGACGTACAGCTAGAGCAGGCCAACCTGGCCTAGTTACGAGTCTATATTCAGAATCAAACCGTGATCTTGTTGCTGCCATTCGTCATGCAGAAAAAATTGAAGAGCCAGTG.....................................................................................................................................................................................................................................................................................................................................................................GAGAAAGCATTTAGCAGAAAAAGGAGCTTTCGCAATAAAATCAAGAAAAGAGGCAGAGAAGCTTCCTACCACATGAGGTG-AAAATGTG-ATTTTG---T----CTTGGGAGTGAGTTTCTATTTGCATTTG-TTTCTCCACACTGTTTGTATTTTAGAGTGTTAATTGTAATATCCCTTGAATGTAAAAGAAATTAATTAGTTCAGAGTATTTAATATGAAAGTTAACACA-TTTCCCAG--------TCATGAAGTGAAGTTGAATATAAAGACCACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412556" ref_strand="-" ref_description="SGN-E412556 [STM-16-O22]">
      <seq>aaaatgggaagtctatggcagatagtgttcctggagtgctccgaaccatggtctttgcaaataccgttgacgctgtggaagctgttgttaatatcttgacaggagctggacttgaatgtttccgctaccatagtgatagctctttggaggagcgcacaaagaatttacttgatttccaacagaaaggtggtgtttttgtgtgcacggatgctgcagcacgtggtattgatattccaaatgtttcacatgttattcaggcagagtttgctacgtctgctgtagatttcttgcacagggttggacgtacagctagagcaggccaacctggcctagttacgagtctatattcaaaatcaaaccgtgatcttgttgctgccattcgtcatgcagaaaaaattgaagagccagtggagaaagcatttagcagaaaaaggagctttcgcaataaaatcaagaaaagaggcagagaagcttcctcccacatgaggtgaaaatgtgattttgtcttgggagtgagtttctatttgcatttgtttctccacactgtttgtattttagagtattattgtaatatccctttactgtaaaagaaattaattagttcagagtattaaaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="47704" stop="49604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48004" g_stop="48260" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48261" i_stop="48581" i_length="321">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48582" g_stop="48734" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="410" r_length="153" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48735" i_stop="49091" i_length="357">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49092" g_stop="49260" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="572" r_length="162" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="613" polyA_stop="623"/>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E412556" ref_strand="-">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412556" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48004" e_stop="48260"/>
          <exon e_start="48582" e_stop="48734"/>
          <exon e_start="49092" e_stop="49260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGGAATTCTATGGCAGATAGTAGTCCTGGAGTGCTCCGAACCATGGTCTTTGCAAATACTGTTGACGCTGTGGAAGCTGTTGCTAATATCTTGACAAGAGTTGGACTTGAATGTTTCCGTTACCATAGTGATAGCTCTTTGGAGGAGCGCACAAAGAATTTACTTGATTTCCAACAGAAAGGTGGTGTTTTTGTGTGCACGGATGCTGCAGCACGTGGTATTGACATTCCAAATGTTTCACATGTTATTCAGGTTTGTTTTCTTAAGTAAATACGTTGTTCTTATCTCAATCAGTTTCTGGTTGTTCTTTGATGCCTAATATTTTGGTTTAATTTATTAAAAAGTAGAACAGAGTCGTTTTTCTTTATGCTTTGTACCCAATACACCTTATTATGTCTCATTCACTAAAGAACATTTCTGCATTTTACTGCATTGCTGGGTTAATTGGCTACTTGTACATTGATTTTATTAGCGGAGTTACTTAACTTGTGATGCCTTTATTGGCCTTGTAGTTCCGTATGCATCTATATTGACGTGTTTTTACACTCAATTGTTTTCCCCTCCTCATTGTAGGCAGAGTTTGCCACATCTGCTGTAGATTTCTTGCACAGGGTTGGACGTACAGCTAGAGCAGGCCAACCTGGCCTTGTTACGAGTCTATATTCAGAATCAAACCGTGATCTAGTTGCTGCCATTCGTCATGCAGAAAAAATTGAAGAGCCAGTGGTACGTTCTATATCTTAAAACGCTTTAAGATAGTGACCTAAAGAAGCCTATGTCAGACTAGCCACATAGTTACCAACGCATAAATTTCATATCTTTTAGTGATAGAAGCGTTTGTTTGATTCTAGCGGTGAAATAGAGTCCTTTCAGGTCAGCTTGTAATTAGCTGATAAGCTTAAAGTGCTTGAAGTAGAAATGCTGAACCTGTTAATAAGCAGTTATCGATTGATTTCTAATGTTCTCGACACCTGCAAAAGTTGCTTATAACTTATCGACTTCAATTTCTCAACGGATTCTTTATGTAATCATCTTGAAGAGAACTAGTTCTGTTGTTATATTAAGATTGATATGTTTCCACAGGAGAAAGCATTTAGCAGAAAAAGGAGTTTTCGCAATAAAATCAAGAAAAGAGGCAGAGAAGC-T--TCACACATGAGGTGAAAAATGTGAATTTTGACTTGGGACTTGGGAGTGAGTTTCTATTTGCATTTGTTTTCTCCACACTGTTTGTATTTTATAGTGTTATTGTAAT</genome_strand>
        <mrna_strand>AAAATGGGAAGTCTATGGCAGATAGTGTTCCTGGAGTGCTCCGAACCATGGTCTTTGCAAATACCGTTGACGCTGTGGAAGCTGTTGTTAATATCTTGACAGGAGCTGGACTTGAATGTTTCCGCTACCATAGTGATAGCTCTTTGGAGGAGCGCACAAAGAATTTACTTGATTTCCAACAGAAAGGTGGTGTTTTTGTGTGCACGGATGCTGCAGCACGTGGTATTGATATTCCAAATGTTTCACATGTTATTCAG.................................................................................................................................................................................................................................................................................................................................GCAGAGTTTGCTACGTCTGCTGTAGATTTCTTGCACAGGGTTGGACGTACAGCTAGAGCAGGCCAACCTGGCCTAGTTACGAGTCTATATTCAAAATCAAACCGTGATCTTGTTGCTGCCATTCGTCATGCAGAAAAAATTGAAGAGCCAGTG.....................................................................................................................................................................................................................................................................................................................................................................GAGAAAGCATTTAGCAGAAAAAGGAGCTTTCGCAATAAAATCAAGAAAAGAGGCAGAGAAGCTTCCTCCCACATGAGGTG-AAAATGTG-ATTTTG---T----CTTGGGAGTGAGTTTCTATTTGCATTTG-TTTCTCCACACTGTTTGTATTTTAGAGTATTATTGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302310" ref_strand="+" ref_description="SGN-E302310 [cLEW-19-H6]">
      <seq>actagtctcgagtatttttttttcttttaccaatgatattcctaagagtccgacctcagctcccctttgtgactgaatcattttgagcggggggacggtggaaattttgataaataacattccgtttctgaaacattagtggcaagtatatagagattacttctattcaccatttcatattcattctctagtttgaaactcttgtgagttgttcttttacgcttattttcgtgttgcaggacagaattaacttacttttagtttgtcattcaactgttttaaagtaatatgataattgtgctgtgttctaaatgctaatccatcccctcgaaaaaaaatacagagggatatgttaaatttatttggtcattttagtagtttgaaaaaatttacatgaacttgtaaagttttcaaaaaacaaaaaaacagaatttagctggataagtttggccagctggggttttcagtctttaagaattcagtggataactcttcaaaattactttgaacagcgtgttttcaggacagagctgatgaatatgaaatgtgtctaacctctctaaatgacatgtcaaatgaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="56699" stop="55525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56396" g_stop="55825" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="584" r_length="572" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E302310" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56396" e_stop="55825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTTTTTCTTTTACCAATGATATTCCTAAGAGTCCGACCTCAGCTCCCCTTTGTGACTGAATCATTTTGAGCGGGGGGACGGTGGAAATTTTGATAAATAACATTCCGTTTCTGAAACATTAGTGGCAAGTATATAGAGATTACTTCTATTCACCATTTCATATTCATTCTCTAGTTTGAAACTCTTGTGAGTTGTTCTTTTACGCTTATTTTCGTGTTGCAGGACAGAATTAACTTACTTTTAGTTTGTCATTCAACTGTTTTAAAGTAATATGATAATTGTGCTGTGTTCTAAATGCTAATCCATCCCCTCGAAAAAAAATACAGAGGGATATGTTAAATTTATTTGGTCATTTTAGTAGTTTGAAAAAATTTACATGAACTTGTAAAGTTTTCAAAAAACAAAAAAACAGAATTTAGCTGGATAAGTTTGGCCAGCTGGGGTTTTCAGTCTTTAAGAATTCAGTGGATAACTCTTCAAAATTACTTTGAACAGCGTGTTTTCAGGACAGAGCTGATGAATATGAAATGTGTCTAACCTCTCTAAATGACATGTCAAATGAATATG</genome_strand>
        <mrna_strand>TATTTTTTTTTCTTTTACCAATGATATTCCTAAGAGTCCGACCTCAGCTCCCCTTTGTGACTGAATCATTTTGAGCGGGGGGACGGTGGAAATTTTGATAAATAACATTCCGTTTCTGAAACATTAGTGGCAAGTATATAGAGATTACTTCTATTCACCATTTCATATTCATTCTCTAGTTTGAAACTCTTGTGAGTTGTTCTTTTACGCTTATTTTCGTGTTGCAGGACAGAATTAACTTACTTTTAGTTTGTCATTCAACTGTTTTAAAGTAATATGATAATTGTGCTGTGTTCTAAATGCTAATCCATCCCCTCGAAAAAAAATACAGAGGGATATGTTAAATTTATTTGGTCATTTTAGTAGTTTGAAAAAATTTACATGAACTTGTAAAGTTTTCAAAAAACAAAAAAACAGAATTTAGCTGGATAAGTTTGGCCAGCTGGGGTTTTCAGTCTTTAAGAATTCAGTGGATAACTCTTCAAAATTACTTTGAACAGCGTGTTTTCAGGACAGAGCTGATGAATATGAAATGTGTCTAACCTCTCTAAATGACATGTCAAATGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262127" ref_strand="+" ref_description="SGN-E262127 [cLEG-58-M16]">
      <seq>ggaaatgtgaaagatctcatgcttggttggtgtcagatcggagccaaaggtgcagaacattttgccgatatgttgaagtacaatagtaccatatcaactctagacttgcgagccaatggacttagagacgagggtgcaatctgccttgctcggagtttgaaagtagtcaatgaatctttgatgacactcaatttagggttcaatgaaattagagatgaaggagctttttctatcgctcaagcacttaaagcaaatgaagatgttagactcacatctttaaatcttgccagtaacttcctcaccaaattaggacagacagctctcacagatgcaagagaccatgtatttgagatgactgagaaggagcttgctgttatgttctaaaataccacattccttagatcagatttatttttctccctgctttcattcttgaggttggggcagggctgcataggtgagtattttttttcttttaccaatgatattcctaagagtccgacctcagctcccctttgtgactgaatcattttgagcggggggacggtggaaattttgataaataacattccgtttctgaaacattagtggcaagtatatagagattacttctattcaccatttcatattcattctctagtttgaaactcttgtgagttgntcttttacgcttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="57497" stop="55880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57197" g_stop="57162" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57161" i_stop="57085" i_length="77">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57084" g_stop="56989" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="132" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56988" i_stop="56907" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56906" g_stop="56826" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="213" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56825" i_stop="56740" i_length="86">
            <donor d_prob="0.680" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56739" g_stop="56638" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="315" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56637" i_stop="56544" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.563" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56543" g_stop="56180" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="678" r_length="363" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E262127" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57197" e_stop="57162"/>
          <exon e_start="57084" e_stop="56989"/>
          <exon e_start="56906" e_stop="56826"/>
          <exon e_start="56739" e_stop="56638"/>
          <exon e_start="56543" e_stop="56180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGTGAAAGATCTCATGCTTGGTTGGTGTCAGGTAATACATTGATTGTTTCATATAGATGCCCCCTCTTTTGCAAACTTTTTTAGCGTGCTCAACTAATTTTGTTGCAGATCGGAGCCAAAGGTGCAGAACATTTTGCCGATATGTTGAAGTACAATAGTACCATATCAACTCTAGACTTGCGAGCCAATGGACTTAGAGACGAGGTTCATTCAAAGTTTATAGTTCTCCTATTCTGCCACAATCTTTAATTTCCCTCAAAAGTACATGAACTATATCCCTTTTCAGGGTGCAATCTGCCTTGCTCGGAGTTTGAAAGTAGTCAATGAATCTTTGATGACACTCAATTTAGGGTTCAATGAAATTAGAGTATGCAACTCTTTTCCAGTACAAGTACAACCACCTGTCTTGATAAAGGTATCATCTTGTATTAACTTAGTTTCTCTTGCGCACAGGATGAAGGAGCTTTTTCTATCGCTCAAGCACTTAAAGCAAATGAAGATGTTAGACTCACATCTTTAAATCTTGCCAGTAACTTCCTCACCAAATTAGGACAGGTAACTTCAAATGATATAACATTACTCTCTTATTTTACCTGTTTTACGCGATTTTTTGTTCCTTACAATATCCGGACGGATTTCCGAATTTCAGACAGCTCTCACAGATGCAAGAGACCATGTATTTGAGATGACTGAGAAGGAGCTTGCTGTTATGTTCTAAAATACCACATTCCTTAGATCAGATTTATTTTTCTCCCTGCTTTCATTCTTGAGGTTGGGGCAGGGCTGCATAGGTGAGTATTTTTTTTTCTTTTACCAATGATATTCCTAAGAGTCCGACCTCAGCTCCCCTTTGTGACTGAATCATTTTGAGCGGGGGGACGGTGGAAATTTTGATAAATAACATTCCGTTTCTGAAACATTAGTGGCAAGTATATAGAGATTACTTCTATTCACCATTTCATATTCATTCTCTAGTTTGAAACTCTTGTGAGTTGTTCTTTTACGCTTATTTT</genome_strand>
        <mrna_strand>GGAAATGTGAAAGATCTCATGCTTGGTTGGTGTCAG.............................................................................ATCGGAGCCAAAGGTGCAGAACATTTTGCCGATATGTTGAAGTACAATAGTACCATATCAACTCTAGACTTGCGAGCCAATGGACTTAGAGACGAG..................................................................................GGTGCAATCTGCCTTGCTCGGAGTTTGAAAGTAGTCAATGAATCTTTGATGACACTCAATTTAGGGTTCAATGAAATTAGA......................................................................................GATGAAGGAGCTTTTTCTATCGCTCAAGCACTTAAAGCAAATGAAGATGTTAGACTCACATCTTTAAATCTTGCCAGTAACTTCCTCACCAAATTAGGACAG..............................................................................................ACAGCTCTCACAGATGCAAGAGACCATGTATTTGAGATGACTGAGAAGGAGCTTGCTGTTATGTTCTAAAATACCACATTCCTTAGATCAGATTTATTTTTCTCCCTGCTTTCATTCTTGAGGTTGGGGCAGGGCTGCATAGGTGAGTA-TTTTTTTTCTTTTACCAATGATATTCCTAAGAGTCCGACCTCAGCTCCCCTTTGTGACTGAATCATTTTGAGCGGGGGGACGGTGGAAATTTTGATAAATAACATTCCGTTTCTGAAACATTAGTGGCAAGTATATAGAGATTACTTCTATTCACCATTTCATATTCATTCTCTAGTTTGAAACTCTTGTGAGTTGNTCTTTTACGCTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255158" ref_strand="+" ref_description="SGN-E255158 [cLEG-31-M11]">
      <seq>gggctgcaggtggaaatgtgaaagatctcatgcttggttggtgtcagatcggagctaaaggtgcggaacattttgccgatatggggaagtacaatagtaccatatcaactctagacttgcgagccaatggacttagagacgagggtgcaatctgccttgctcggagtttgaaagtagtcaatgaatctttgatgacactcaatttagggttcaatgaaattagagatgaaggagctttttctatcgctcaagcacttaaagcaaatgaagatgttagactcacatctttaaatcttgccagtaacttcctcaccaaattaggacagacagctctcacagatgcaagagaccatgtatttgagatgactgagaaggagcttgctgttatgttctaaaataccacattccttagatcagatttatttttctccctgctttcattcttgaggttggggcagggctgcataggtgagtattttttttcttttaccaatgatattcctaagagtccgacctcagctcccctttgtgactgaatcattttgagcggggggacggtggaaattttgataaataacattccgtttctgaaacattagtggcaagtatatagagattacttctattcaccatttcatattcattctctagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="57498" stop="55914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57206" g_stop="57162" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.822"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57161" i_stop="57085" i_length="77">
            <donor d_prob="0.975" d_score="0.82"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57084" g_stop="56989" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="143" r_length="96" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56988" i_stop="56907" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56906" g_stop="56826" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="224" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56825" i_stop="56740" i_length="86">
            <donor d_prob="0.680" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56739" g_stop="56638" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="326" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56637" i_stop="56544" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.563" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56543" g_stop="56214" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="655" r_length="329" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E255158" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57206" e_stop="57162"/>
          <exon e_start="57084" e_stop="56989"/>
          <exon e_start="56906" e_stop="56826"/>
          <exon e_start="56739" e_stop="56638"/>
          <exon e_start="56543" e_stop="56214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTCA--TGGAAATGTGAAAGATCTCATGCTTGGTTGGTGTCAGGTAATACATTGATTGTTTCATATAGATGCCCCCTCTTTTGCAAACTTTTTTAGCGTGCTCAACTAATTTTGTTGCAGATCGGAGCCAAAGGTGCAGAACATTTTGCCGATATGTTGAAGTACAATAGTACCATATCAACTCTAGACTTGCGAGCCAATGGACTTAGAGACGAGGTTCATTCAAAGTTTATAGTTCTCCTATTCTGCCACAATCTTTAATTTCCCTCAAAAGTACATGAACTATATCCCTTTTCAGGGTGCAATCTGCCTTGCTCGGAGTTTGAAAGTAGTCAATGAATCTTTGATGACACTCAATTTAGGGTTCAATGAAATTAGAGTATGCAACTCTTTTCCAGTACAAGTACAACCACCTGTCTTGATAAAGGTATCATCTTGTATTAACTTAGTTTCTCTTGCGCACAGGATGAAGGAGCTTTTTCTATCGCTCAAGCACTTAAAGCAAATGAAGATGTTAGACTCACATCTTTAAATCTTGCCAGTAACTTCCTCACCAAATTAGGACAGGTAACTTCAAATGATATAACATTACTCTCTTATTTTACCTGTTTTACGCGATTTTTTGTTCCTTACAATATCCGGACGGATTTCCGAATTTCAGACAGCTCTCACAGATGCAAGAGACCATGTATTTGAGATGACTGAGAAGGAGCTTGCTGTTATGTTCTAAAATACCACATTCCTTAGATCAGATTTATTTTTCTCCCTGCTTTCATTCTTGAGGTTGGGGCAGGGCTGCATAGGTGAGTATTTTTTTTTCTTTTACCAATGATATTCCTAAGAGTCCGACCTCAGCTCCCCTTTGTGACTGAATCATTTTGAGCGGGGGGACGGTGGAAATTTTGATAAATAACATTCCGTTTCTGAAACATTAGTGGCAAGTATATAGAGATTACTTCTATTCACCATTTCATATTCATTCTCTAGTTTG</genome_strand>
        <mrna_strand>GGGCTGCAGGTGGAAATGTGAAAGATCTCATGCTTGGTTGGTGTCAG.............................................................................ATCGGAGCTAAAGGTGCGGAACATTTTGCCGATATGGGGAAGTACAATAGTACCATATCAACTCTAGACTTGCGAGCCAATGGACTTAGAGACGAG..................................................................................GGTGCAATCTGCCTTGCTCGGAGTTTGAAAGTAGTCAATGAATCTTTGATGACACTCAATTTAGGGTTCAATGAAATTAGA......................................................................................GATGAAGGAGCTTTTTCTATCGCTCAAGCACTTAAAGCAAATGAAGATGTTAGACTCACATCTTTAAATCTTGCCAGTAACTTCCTCACCAAATTAGGACAG..............................................................................................ACAGCTCTCACAGATGCAAGAGACCATGTATTTGAGATGACTGAGAAGGAGCTTGCTGTTATGTTCTAAAATACCACATTCCTTAGATCAGATTTATTTTTCTCCCTGCTTTCATTCTTGAGGTTGGGGCAGGGCTGCATAGGTGAGTA-TTTTTTTTCTTTTACCAATGATATTCCTAAGAGTCCGACCTCAGCTCCCCTTTGTGACTGAATCATTTTGAGCGGGGGGACGGTGGAAATTTTGATAAATAACATTCCGTTTCTGAAACATTAGTGGCAAGTATATAGAGATTACTTCTATTCACCATTTCATATTCATTCTCTAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369944" ref_strand="-" ref_description="SGN-E369944 [TUS-26-F9]">
      <seq>tgcttggttggtgtcagatcggagccaaaggtgcagaacattttgccgatatgttgaagtacaatagtaccatatcaactctagacttgcgagccaatggacttagagacgagggtgcaatctgccttgctcggagtttgaaagtagtcaatgaatctttgatgacactcaatttagggttcaatgaaattagagatgaaggagctttttctatcgctcaagcacttaaagcaaatgaagatgttagactcacatctttaaatcttgccagtaacttcctcaccaaattaggacagacagctctcacagatgcaagagaccatgtatttgagatgactgagaaggagcttgctgttatgttctaaaataccacattccttagatcagatttatttttctccctgcatttcattcttgaggttggggcagggctgcataggtgagtatttttttttcttttaccaatgatattcctaagagtccgacctcagctcccctttgtgactgaatcattttgagcggggggacggtggaaattttgataaataacattccgtttctgaaacattagtggcaagtatatagagattacttctattcaccatttcatattcattctctaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="57393" stop="55919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57178" g_stop="57162" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57161" i_stop="57085" i_length="77">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57084" g_stop="56989" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="113" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56988" i_stop="56907" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56906" g_stop="56826" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="194" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56825" i_stop="56740" i_length="86">
            <donor d_prob="0.680" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56739" g_stop="56638" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="296" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56637" i_stop="56544" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.563" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56543" g_stop="56219" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="622" r_length="326" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="644"/>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E369944" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369944" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57178" e_stop="57162"/>
          <exon e_start="57084" e_stop="56989"/>
          <exon e_start="56906" e_stop="56826"/>
          <exon e_start="56739" e_stop="56638"/>
          <exon e_start="56543" e_stop="56219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTGGTTGGTGTCAGGTAATACATTGATTGTTTCATATAGATGCCCCCTCTTTTGCAAACTTTTTTAGCGTGCTCAACTAATTTTGTTGCAGATCGGAGCCAAAGGTGCAGAACATTTTGCCGATATGTTGAAGTACAATAGTACCATATCAACTCTAGACTTGCGAGCCAATGGACTTAGAGACGAGGTTCATTCAAAGTTTATAGTTCTCCTATTCTGCCACAATCTTTAATTTCCCTCAAAAGTACATGAACTATATCCCTTTTCAGGGTGCAATCTGCCTTGCTCGGAGTTTGAAAGTAGTCAATGAATCTTTGATGACACTCAATTTAGGGTTCAATGAAATTAGAGTATGCAACTCTTTTCCAGTACAAGTACAACCACCTGTCTTGATAAAGGTATCATCTTGTATTAACTTAGTTTCTCTTGCGCACAGGATGAAGGAGCTTTTTCTATCGCTCAAGCACTTAAAGCAAATGAAGATGTTAGACTCACATCTTTAAATCTTGCCAGTAACTTCCTCACCAAATTAGGACAGGTAACTTCAAATGATATAACATTACTCTCTTATTTTACCTGTTTTACGCGATTTTTTGTTCCTTACAATATCCGGACGGATTTCCGAATTTCAGACAGCTCTCACAGATGCAAGAGACCATGTATTTGAGATGACTGAGAAGGAGCTTGCTGTTATGTTCTAAAATACCACATTCCTTAGATCAGATTTATTTTTCTCCCTGC-TTTCATTCTTGAGGTTGGGGCAGGGCTGCATAGGTGAGTATTTTTTTTTCTTTTACCAATGATATTCCTAAGAGTCCGACCTCAGCTCCCCTTTGTGACTGAATCATTTTGAGCGGGGGGACGGTGGAAATTTTGATAAATAACATTCCGTTTCTGAAACATTAGTGGCAAGTATATAGAGATTACTTCTATTCACCATTTCATATTCATTCTCTA</genome_strand>
        <mrna_strand>TGCTTGGTTGGTGTCAG.............................................................................ATCGGAGCCAAAGGTGCAGAACATTTTGCCGATATGTTGAAGTACAATAGTACCATATCAACTCTAGACTTGCGAGCCAATGGACTTAGAGACGAG..................................................................................GGTGCAATCTGCCTTGCTCGGAGTTTGAAAGTAGTCAATGAATCTTTGATGACACTCAATTTAGGGTTCAATGAAATTAGA......................................................................................GATGAAGGAGCTTTTTCTATCGCTCAAGCACTTAAAGCAAATGAAGATGTTAGACTCACATCTTTAAATCTTGCCAGTAACTTCCTCACCAAATTAGGACAG..............................................................................................ACAGCTCTCACAGATGCAAGAGACCATGTATTTGAGATGACTGAGAAGGAGCTTGCTGTTATGTTCTAAAATACCACATTCCTTAGATCAGATTTATTTTTCTCCCTGCATTTCATTCTTGAGGTTGGGGCAGGGCTGCATAGGTGAGTATTTTTTTTTCTTTTACCAATGATATTCCTAAGAGTCCGACCTCAGCTCCCCTTTGTGACTGAATCATTTTGAGCGGGGGGACGGTGGAAATTTTGATAAATAACATTCCGTTTCTGAAACATTAGTGGCAAGTATATAGAGATTACTTCTATTCACCATTTCATATTCATTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258894" ref_strand="-" ref_description="SGN-E258894 [cLEG-41-I6]">
      <seq>gctcaagcacttaaagcaaatgaagatgttagactcacatctttaaatcttgccagtaacttcctcaccaaattaggacagacagctctcacagatgcaagagaccatgtatttgagatgactgagaaggagcttgctgttatgttctaaaataccacattccttagatcagatttatttttctccctgctttcattcttgaggttggggcagggttgcataggtgagtatttttttttcttttaccaatgatattcctaagagtccgacctcagctcccctttgtgaatgaatcattttcagcggggggacggtggaaattttgataaataacattccgtttctgaaacattagtggcaagtatatagagattacttctattcaccatttcatattcattctctaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="57018" stop="55919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56718" g_stop="56638" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56637" i_stop="56544" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.563" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56543" g_stop="56219" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="406" r_length="325" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="407" polyA_stop="428"/>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E258894" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258894" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56718" e_stop="56638"/>
          <exon e_start="56543" e_stop="56219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAAGCACTTAAAGCAAATGAAGATGTTAGACTCACATCTTTAAATCTTGCCAGTAACTTCCTCACCAAATTAGGACAGGTAACTTCAAATGATATAACATTACTCTCTTATTTTACCTGTTTTACGCGATTTTTTGTTCCTTACAATATCCGGACGGATTTCCGAATTTCAGACAGCTCTCACAGATGCAAGAGACCATGTATTTGAGATGACTGAGAAGGAGCTTGCTGTTATGTTCTAAAATACCACATTCCTTAGATCAGATTTATTTTTCTCCCTGCTTTCATTCTTGAGGTTGGGGCAGGGCTGCATAGGTGAGTATTTTTTTTTCTTTTACCAATGATATTCCTAAGAGTCCGACCTCAGCTCCCCTTTGTGACTGAATCATTTTGAGCGGGGGGACGGTGGAAATTTTGATAAATAACATTCCGTTTCTGAAACATTAGTGGCAAGTATATAGAGATTACTTCTATTCACCATTTCATATTCATTCTCTA</genome_strand>
        <mrna_strand>GCTCAAGCACTTAAAGCAAATGAAGATGTTAGACTCACATCTTTAAATCTTGCCAGTAACTTCCTCACCAAATTAGGACAG..............................................................................................ACAGCTCTCACAGATGCAAGAGACCATGTATTTGAGATGACTGAGAAGGAGCTTGCTGTTATGTTCTAAAATACCACATTCCTTAGATCAGATTTATTTTTCTCCCTGCTTTCATTCTTGAGGTTGGGGCAGGGTTGCATAGGTGAGTATTTTTTTTTCTTTTACCAATGATATTCCTAAGAGTCCGACCTCAGCTCCCCTTTGTGAATGAATCATTTTCAGCGGGGGGACGGTGGAAATTTTGATAAATAACATTCCGTTTCTGAAACATTAGTGGCAAGTATATAGAGATTACTTCTATTCACCATTTCATATTCATTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740228" ref_strand="+" ref_description="SGN-E740228 [LC20CD06]">
      <seq>ctttcaaactccgagcaaggcagattgcaagtagtcaatgaatctttgatgacactcaatttagggttcaatgaaattagagatgaaggagctttttctatcgctcaagcacttaaagcaaatgaagatgttagactcacatctttaaatcttgccagtaacttcctcaccaaattaggacagacagctctcacagatgcaagagaccatgtatttgagatgactgagaaggagcttgctgttatgttctaaaataccacattccttagatcagatttatttttctccctgctttcattcttgaggttggggcagggctgcataggtgagtatttttttttcttttaccaatgatattcctaagagtccgacctcagctcccctttgtgactgaatcattttgagcggggggacggtggaaattttgataaataacattccgtttctgaaacattagtggcaagtatatagagattacttctattcaccatttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="57204" stop="55930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56906" g_stop="56826" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.840"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56825" i_stop="56740" i_length="86">
            <donor d_prob="0.680" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56739" g_stop="56638" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="183" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56637" i_stop="56544" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.563" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56543" g_stop="56233" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="494" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="511"/>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E740228" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56906" e_stop="56826"/>
          <exon e_start="56739" e_stop="56638"/>
          <exon e_start="56543" e_stop="56233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCAATCTGCCTTGCTCGG-AGTTTGAAAGTAGTCAATGAATCTTTGATGACACTCAATTTAGGGTTCAATGAAATTAGAGTATGCAACTCTTTTCCAGTACAAGTACAACCACCTGTCTTGATAAAGGTATCATCTTGTATTAACTTAGTTTCTCTTGCGCACAGGATGAAGGAGCTTTTTCTATCGCTCAAGCACTTAAAGCAAATGAAGATGTTAGACTCACATCTTTAAATCTTGCCAGTAACTTCCTCACCAAATTAGGACAGGTAACTTCAAATGATATAACATTACTCTCTTATTTTACCTGTTTTACGCGATTTTTTGTTCCTTACAATATCCGGACGGATTTCCGAATTTCAGACAGCTCTCACAGATGCAAGAGACCATGTATTTGAGATGACTGAGAAGGAGCTTGCTGTTATGTTCTAAAATACCACATTCCTTAGATCAGATTTATTTTTCTCCCTGCTTTCATTCTTGAGGTTGGGGCAGGGCTGCATAGGTGAGTATTTTTTTTTCTTTTACCAATGATATTCCTAAGAGTCCGACCTCAGCTCCCCTTTGTGACTGAATCATTTTGAGCGGGGGGACGGTGGAAATTTTGATAAATAACATTCCGTTTCTGAAACATTAGTGGCAAGTATATAGAGATTACTTCTATTCACCATTTC</genome_strand>
        <mrna_strand>CTTTCAAACT-CCGAGCAAGGCAGATTGCAAGTAGTCAATGAATCTTTGATGACACTCAATTTAGGGTTCAATGAAATTAGA......................................................................................GATGAAGGAGCTTTTTCTATCGCTCAAGCACTTAAAGCAAATGAAGATGTTAGACTCACATCTTTAAATCTTGCCAGTAACTTCCTCACCAAATTAGGACAG..............................................................................................ACAGCTCTCACAGATGCAAGAGACCATGTATTTGAGATGACTGAGAAGGAGCTTGCTGTTATGTTCTAAAATACCACATTCCTTAGATCAGATTTATTTTTCTCCCTGCTTTCATTCTTGAGGTTGGGGCAGGGCTGCATAGGTGAGTATTTTTTTTTCTTTTACCAATGATATTCCTAAGAGTCCGACCTCAGCTCCCCTTTGTGACTGAATCATTTTGAGCGGGGGGACGGTGGAAATTTTGATAAATAACATTCCGTTTCTGAAACATTAGTGGCAAGTATATAGAGATTACTTCTATTCACCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341522" ref_strand="+" ref_description="SGN-E341522 [cTOE-23-I17]">
      <seq>gttgatcttgggggcaatgacatacatgctaagggtattagtgccatagcagaagttctgaaagataattctgtcattacctccttagaacttggttacaaccccattggaccagagggggcaatggcattagcagaggtactcaagtttcatggaaatgtgaaagatctcatgcttggttggtgtcagatcggagccaaaggtgcagaacattttgccgatatgttgaagtacaatagtaccatatcaactctagacttgcgagccaatggacttagagacgagggtgcaatctgccttgctcggagtttgaaagtagtcaatgaatctttgatgacactcaatttagggttcaatgaaattagagatgaaggagctttttctatcgctcaagcacttaaagcaaatgaagatgttagactcacatctttaaatcttgccagtaacttcctcaccaaattaggacagacagctctcacagatgcaagagaccatgtatttgagatgactgagaaggagcttgctgttatgttctaaaataccacattccttagatcagatttatttttctccctgctttcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="57721" stop="56126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57558" g_stop="57550" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57549" i_stop="57415" i_length="135">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57414" g_stop="57340" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="84" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57339" i_stop="57267" i_length="73">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57266" g_stop="57162" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="189" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57161" i_stop="57085" i_length="77">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57084" g_stop="56989" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="285" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56988" i_stop="56907" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56906" g_stop="56826" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="366" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56825" i_stop="56740" i_length="86">
            <donor d_prob="0.680" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56739" g_stop="56638" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="468" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="56637" i_stop="56544" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.563" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="56543" g_stop="56426" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="586" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E341522" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57558" e_stop="57550"/>
          <exon e_start="57414" e_stop="57340"/>
          <exon e_start="57266" e_stop="57162"/>
          <exon e_start="57084" e_stop="56989"/>
          <exon e_start="56906" e_stop="56826"/>
          <exon e_start="56739" e_stop="56638"/>
          <exon e_start="56543" e_stop="56426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATCTTGTGAGAATTGTTTCTTCTTTTCTATTTTATTTAATATTTTCTTGTTTTTGTTCACGGAAGAGGTTGGGTTTCTTAATCTTACCAGAGCATTATTTTCTATTTGCTCTTATTGCTGAAATTCTGTGAATTTTACAGGGGGGCAATGACATACATGCTAAGGGTATTAGTGCCATAGCAGAAGTTCTGAAAGATAATTCTGTCATTACCTCCGTGAGTTCATCTTACTTTTACCGATTTATTGGACCAAATCAAATACATTATCTTTAAAATTTCTCACAAACAGTTAGAACTTGGTTACAACCCCATTGGACCAGAGGGGGCAATGGCATTAGCAGAGGTACTCAAGTTTCATGGAAATGTGAAAGATCTCATGCTTGGTTGGTGTCAGGTAATACATTGATTGTTTCATATAGATGCCCCCTCTTTTGCAAACTTTTTTAGCGTGCTCAACTAATTTTGTTGCAGATCGGAGCCAAAGGTGCAGAACATTTTGCCGATATGTTGAAGTACAATAGTACCATATCAACTCTAGACTTGCGAGCCAATGGACTTAGAGACGAGGTTCATTCAAAGTTTATAGTTCTCCTATTCTGCCACAATCTTTAATTTCCCTCAAAAGTACATGAACTATATCCCTTTTCAGGGTGCAATCTGCCTTGCTCGGAGTTTGAAAGTAGTCAATGAATCTTTGATGACACTCAATTTAGGGTTCAATGAAATTAGAGTATGCAACTCTTTTCCAGTACAAGTACAACCACCTGTCTTGATAAAGGTATCATCTTGTATTAACTTAGTTTCTCTTGCGCACAGGATGAAGGAGCTTTTTCTATCGCTCAAGCACTTAAAGCAAATGAAGATGTTAGACTCACATCTTTAAATCTTGCCAGTAACTTCCTCACCAAATTAGGACAGGTAACTTCAAATGATATAACATTACTCTCTTATTTTACCTGTTTTACGCGATTTTTTGTTCCTTACAATATCCGGACGGATTTCCGAATTTCAGACAGCTCTCACAGATGCAAGAGACCATGTATTTGAGATGACTGAGAAGGAGCTTGCTGTTATGTTCTAAAATACCACATTCCTTAGATCAGATTTATTTTTCTCCCTGCTTTCATTCT</genome_strand>
        <mrna_strand>GTTGATCTT.......................................................................................................................................GGGGGCAATGACATACATGCTAAGGGTATTAGTGCCATAGCAGAAGTTCTGAAAGATAATTCTGTCATTACCTCC.........................................................................TTAGAACTTGGTTACAACCCCATTGGACCAGAGGGGGCAATGGCATTAGCAGAGGTACTCAAGTTTCATGGAAATGTGAAAGATCTCATGCTTGGTTGGTGTCAG.............................................................................ATCGGAGCCAAAGGTGCAGAACATTTTGCCGATATGTTGAAGTACAATAGTACCATATCAACTCTAGACTTGCGAGCCAATGGACTTAGAGACGAG..................................................................................GGTGCAATCTGCCTTGCTCGGAGTTTGAAAGTAGTCAATGAATCTTTGATGACACTCAATTTAGGGTTCAATGAAATTAGA......................................................................................GATGAAGGAGCTTTTTCTATCGCTCAAGCACTTAAAGCAAATGAAGATGTTAGACTCACATCTTTAAATCTTGCCAGTAACTTCCTCACCAAATTAGGACAG..............................................................................................ACAGCTCTCACAGATGCAAGAGACCATGTATTTGAGATGACTGAGAAGGAGCTTGCTGTTATGTTCTAAAATACCACATTCCTTAGATCAGATTTATTTTTCTCCCTGCTTTCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624036" ref_strand="+" ref_description="SGN-E624036 [89182]">
      <seq>caataatctgattgactattctggattttcaggtcttgctggatcacttcttgagaataaaactttacaatccttgcatctcaacggcaattatggtggtgctttaggggctgcagcactggctaaaggcttggagagcaataagtccttgagggaactttatttgcaggggaactctgttggcgatgaaggagtacgggcattaatctctggcctatctttgcgtaaagggaaacttgtcttacttgaccttgccaacaattcaattactgctagaggagcatttcatgttgccgaatacgtcaaaaaaagcaaaagcttactgtggttgaatctctatatgaatgacatcaaagatgagggagctgaaaagattgcagaagctttgaaggagaatcgctcgataactaacgttgatcttgggggcaatgacatacatgctaagggtattagtgccatagcagaagttctgaaagataattctgtcattacctctttagaacttggttacaatcccattggaccagagggggcaatggcattagcagaggtactaaagtttcatggaaatgtaaaagatctcatgcttgggtggtgtcagatcggagccaaaggtgcagaatattttgccgatatgttgaagtacaatagtaccatatcaactctagacttgcgagccaatggacttagagacgaggtttcattcaaagtttatagttcttctattatgccacaatctttaatttcccctcaaagtacataaaccatttccttttcaggtgcaatctgcctgctcgaattaaaaagtggtcaatgatcttgacgacactcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="59453" stop="56546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59153" g_stop="59132" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59131" i_stop="59039" i_length="93">
            <donor d_prob="0.709" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59038" g_stop="58977" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="84" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58976" i_stop="58768" i_length="209">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58767" g_stop="58698" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="154" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58697" i_stop="58186" i_length="512">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58185" g_stop="58110" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="230" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58109" i_stop="58013" i_length="97">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58012" g_stop="57882" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="361" r_length="131" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57881" i_stop="57610" i_length="272">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57609" g_stop="57550" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="421" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="57549" i_stop="57415" i_length="135">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="57414" g_stop="57340" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="496" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="57339" i_stop="57267" i_length="73">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="57266" g_stop="57162" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="601" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="57161" i_stop="57085" i_length="77">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="57084" g_stop="56846" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="835" r_length="234" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E624036" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59153" e_stop="59132"/>
          <exon e_start="59038" e_stop="58977"/>
          <exon e_start="58767" e_stop="58698"/>
          <exon e_start="58185" e_stop="58110"/>
          <exon e_start="58012" e_stop="57882"/>
          <exon e_start="57609" e_stop="57550"/>
          <exon e_start="57414" e_stop="57340"/>
          <exon e_start="57266" e_stop="57162"/>
          <exon e_start="57084" e_stop="56846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAATCTGATTGACTATTCTGTATGTTATTATGCAGAACTTGTGATTTGTATTTCCTAGTTATTATCATCTCGGTTTCTGAAGGAAAACATGTTTGATTTGGATATGGAATAGGGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAAGTAAGCAAAATTTGTTCTGCTGTCTTCTGTGCCCATCCTCATTTGTCATATGTCAAACGTAGCAGTTAATTATTTGTTTTTGCTTTATTGGTTTGGAGGGGGAGGGTGGGGGTGGGGGAGAAAGACGTGGATTTTAATTTGTGAGGGAAGGCATATTAATTTTTATTTCCCTTATATCTTTTAATTATGTGCTTTAATTAACTGTTCAGCGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGGGTATATTTCTAATCAATTCCTTCCTCCCACTGTGACCCTTCGCCTTTTGCTCTTTTTTCTGTTCTTGTAATTTGACTTAGCAAATAATTGAGCTTTTTGTTAGCCTTGATATCTTGCTTCTGTGTCATTGCAATGTTTCTTGTTATTCAACTTCTGCACTCATATTTCCTTCCTTTTTAATTTTTTTTGGAAACAACCTCCCTACCTCTACAAGGTATGAGTAAGGTCTTGTTGTTGTTATTCATGTTTCCATTTGATTGTATAGAAGAGCTTTTCTTTTCAAATTTTTCGATTTCCTCTGTGTCTGCTGACACTGTGATTAACTGTGAAATGCCCTCATGTTATTAAATAAACTTCTTTCGGCGGTTTCATAATGTTCCTCACCAACAATCCGAGGTTGAAGCTAGATCTGTTCTGCCCAAAATGGGAATGGGCTACTATTTACATATTACTGTATATCATAAACATGCACCTGCTATTCAAATGTGTTTGAAAAGATTTTTTATATGCAGGAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTGTCTTTGCGTAAAGGTTTGCTTATTGGATATCATTAACCATTCTCTTTAAACATATATTGGCGTTGTGTCCTTTGCATCTTTTTTGAAAGGTCACCATTATATGTCTGCAGGGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCAAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATTAAAGATGAGGTAATTGAACCACTTAAAACTTTCACAGTTTTCTTCCTTTATTATGTAAAAGACTCTTCTCAGCTAACCAAGCTTTTCACTTGAGAAACCAAACGTGTCCATTTTTGCATAGACGATGTATTTATTTTATCCACAGTTATATTTGAAGGATAAAGTTTAACCTGTCCCCATAAATAAGGTATTTGATTTCTTACGTCGCAGATCCAGACTCGATCTCTTGATATGCATTGACTTTCCCTTCTTTTTTTCTCCATTTACATCATATCCATCAGGGAGCTGAAAAGATTGCAGAAGCTTTGAAGGAGAACCGCTCGATAACTAATGTTGATCTTGTGAGAATTGTTTCTTCTTTTCTATTTTATTTAATATTTTCTTGTTTTTGTTCACGGAAGAGGTTGGGTTTCTTAATCTTACCAGAGCATTATTTTCTATTTGCTCTTATTGCTGAAATTCTGTGAATTTTACAGGGGGGCAATGACATACATGCTAAGGGTATTAGTGCCATAGCAGAAGTTCTGAAAGATAATTCTGTCATTACCTCCGTGAGTTCATCTTACTTTTACCGATTTATTGGACCAAATCAAATACATTATCTTTAAAATTTCTCACAAACAGTTAGAACTTGGTTACAACCCCATTGGACCAGAGGGGGCAATGGCATTAGCAGAGGTACTCAAGTTTCATGGAAATGTGAAAGATCTCATGCTTGGTTGGTGTCAGGTAATACATTGATTGTTTCATATAGATGCCCCCTCTTTTGCAAACTTTTTTAGCGTGCTCAACTAATTTTGTTGCAGATCGGAGCCAAAGGTGCAGAACATTTTGCCGATATGTTGAAGTACAATAGTACCATATCAACTCTAGACTTGCGAGCCAATGGACTTAGAGACGAGG-TTCATTCAAAGTTTATAGTTCTCCTATTCTGCCACAATCTTTAATTTCCCTCAAAAGTACATGAACTATATCCCTTTTCAGGGTGCAATCTGCCTTGCTCGGAGTTTGAAAGTAGTCAATGAATCTTTGATGACACTCAATT</genome_strand>
        <mrna_strand>CAATAATCTGATTGACTATTCT.............................................................................................GGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAA.................................................................................................................................................................................................................CGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTATCTTTGCGTAAAG.................................................................................................GGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCTAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATCAAAGATGAG................................................................................................................................................................................................................................................................................GGAGCTGAAAAGATTGCAGAAGCTTTGAAGGAGAATCGCTCGATAACTAACGTTGATCTT.......................................................................................................................................GGGGGCAATGACATACATGCTAAGGGTATTAGTGCCATAGCAGAAGTTCTGAAAGATAATTCTGTCATTACCTCT.........................................................................TTAGAACTTGGTTACAATCCCATTGGACCAGAGGGGGCAATGGCATTAGCAGAGGTACTAAAGTTTCATGGAAATGTAAAAGATCTCATGCTTGGGTGGTGTCAG.............................................................................ATCGGAGCCAAAGGTGCAGAATATTTTGCCGATATGTTGAAGTACAATAGTACCATATCAACTCTAGACTTGCGAGCCAATGGACTTAGAGACGAGGTTTCATTCAAAGTTTATAGTTCTTCTATTATGCCACAATCTTTAATTTCCCCTCAAAGTACATAAACCAT-TTCCTTTTCA-GGTGCAATCTGCC-TGCTC-GAATTAAAAAGTGGTCAATG-ATC-TTGACGACACTCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244801" ref_strand="+" ref_description="SGN-E244801 [cLEF-2-A15]">
      <seq>atcagggagctgaaaagattgcagaagctttgaaggagaaccgctcgataactaatgttgatcttgggggcaatgacatacatgctaagggtattagtgccatagcagaagttctgaaagataattctgtcattacctccttagaacttggttacaaccccattggaccagagggggcaatggcattagcagaggtactcaagtttcatggaaatgtgaaagatctcatgcttggttggtgtcagatcggagccaaaggtgcagaacattttgccgatatgttgaagtacaatagtaccatatcaactctagacttgcgagccaatggacttagagacgagggtgcaatctgccttgctcggagtttgaaagtagtcaatgaatctttgatgacactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="57914" stop="56549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57614" g_stop="57550" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57549" i_stop="57415" i_length="135">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57414" g_stop="57340" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="140" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57339" i_stop="57267" i_length="73">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57266" g_stop="57162" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="245" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57161" i_stop="57085" i_length="77">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57084" g_stop="56989" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="341" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56988" i_stop="56907" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56906" g_stop="56849" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="399" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E244801" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57614" e_stop="57550"/>
          <exon e_start="57414" e_stop="57340"/>
          <exon e_start="57266" e_stop="57162"/>
          <exon e_start="57084" e_stop="56989"/>
          <exon e_start="56906" e_stop="56849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGGGAGCTGAAAAGATTGCAGAAGCTTTGAAGGAGAACCGCTCGATAACTAATGTTGATCTTGTGAGAATTGTTTCTTCTTTTCTATTTTATTTAATATTTTCTTGTTTTTGTTCACGGAAGAGGTTGGGTTTCTTAATCTTACCAGAGCATTATTTTCTATTTGCTCTTATTGCTGAAATTCTGTGAATTTTACAGGGGGGCAATGACATACATGCTAAGGGTATTAGTGCCATAGCAGAAGTTCTGAAAGATAATTCTGTCATTACCTCCGTGAGTTCATCTTACTTTTACCGATTTATTGGACCAAATCAAATACATTATCTTTAAAATTTCTCACAAACAGTTAGAACTTGGTTACAACCCCATTGGACCAGAGGGGGCAATGGCATTAGCAGAGGTACTCAAGTTTCATGGAAATGTGAAAGATCTCATGCTTGGTTGGTGTCAGGTAATACATTGATTGTTTCATATAGATGCCCCCTCTTTTGCAAACTTTTTTAGCGTGCTCAACTAATTTTGTTGCAGATCGGAGCCAAAGGTGCAGAACATTTTGCCGATATGTTGAAGTACAATAGTACCATATCAACTCTAGACTTGCGAGCCAATGGACTTAGAGACGAGGTTCATTCAAAGTTTATAGTTCTCCTATTCTGCCACAATCTTTAATTTCCCTCAAAAGTACATGAACTATATCCCTTTTCAGGGTGCAATCTGCCTTGCTCGGAGTTTGAAAGTAGTCAATGAATCTTTGATGACACTCA</genome_strand>
        <mrna_strand>ATCAGGGAGCTGAAAAGATTGCAGAAGCTTTGAAGGAGAACCGCTCGATAACTAATGTTGATCTT.......................................................................................................................................GGGGGCAATGACATACATGCTAAGGGTATTAGTGCCATAGCAGAAGTTCTGAAAGATAATTCTGTCATTACCTCC.........................................................................TTAGAACTTGGTTACAACCCCATTGGACCAGAGGGGGCAATGGCATTAGCAGAGGTACTCAAGTTTCATGGAAATGTGAAAGATCTCATGCTTGGTTGGTGTCAG.............................................................................ATCGGAGCCAAAGGTGCAGAACATTTTGCCGATATGTTGAAGTACAATAGTACCATATCAACTCTAGACTTGCGAGCCAATGGACTTAGAGACGAG..................................................................................GGTGCAATCTGCCTTGCTCGGAGTTTGAAAGTAGTCAATGAATCTTTGATGACACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244947" ref_strand="+" ref_description="SGN-E244947 [cLEF-2-A18]">
      <seq>atcagggagctgaaaagattgcagaagctttgaaggagaaccgctcgataactaatgttgatcttgggggcaatgacatacatgctaagggtattagtgccatagcagaagttctgaaagataattctgtcattacctccttagaacttggttacaaccccattggaccacagggggcaatggcattagcagaggtactcaagtttcatggaaatgtgaaagatctcatgcttggttggtgtcagatcggagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="57914" stop="56860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57614" g_stop="57550" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57549" i_stop="57415" i_length="135">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57414" g_stop="57340" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="140" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57339" i_stop="57267" i_length="73">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57266" g_stop="57162" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="245" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57161" i_stop="57085" i_length="77">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57084" g_stop="57075" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="255" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E244947" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57614" e_stop="57550"/>
          <exon e_start="57414" e_stop="57340"/>
          <exon e_start="57266" e_stop="57162"/>
          <exon e_start="57084" e_stop="57075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGGGAGCTGAAAAGATTGCAGAAGCTTTGAAGGAGAACCGCTCGATAACTAATGTTGATCTTGTGAGAATTGTTTCTTCTTTTCTATTTTATTTAATATTTTCTTGTTTTTGTTCACGGAAGAGGTTGGGTTTCTTAATCTTACCAGAGCATTATTTTCTATTTGCTCTTATTGCTGAAATTCTGTGAATTTTACAGGGGGGCAATGACATACATGCTAAGGGTATTAGTGCCATAGCAGAAGTTCTGAAAGATAATTCTGTCATTACCTCCGTGAGTTCATCTTACTTTTACCGATTTATTGGACCAAATCAAATACATTATCTTTAAAATTTCTCACAAACAGTTAGAACTTGGTTACAACCCCATTGGACCAGAGGGGGCAATGGCATTAGCAGAGGTACTCAAGTTTCATGGAAATGTGAAAGATCTCATGCTTGGTTGGTGTCAGGTAATACATTGATTGTTTCATATAGATGCCCCCTCTTTTGCAAACTTTTTTAGCGTGCTCAACTAATTTTGTTGCAGATCGGAGCCA</genome_strand>
        <mrna_strand>ATCAGGGAGCTGAAAAGATTGCAGAAGCTTTGAAGGAGAACCGCTCGATAACTAATGTTGATCTT.......................................................................................................................................GGGGGCAATGACATACATGCTAAGGGTATTAGTGCCATAGCAGAAGTTCTGAAAGATAATTCTGTCATTACCTCC.........................................................................TTAGAACTTGGTTACAACCCCATTGGACCACAGGGGGCAATGGCATTAGCAGAGGTACTCAAGTTTCATGGAAATGTGAAAGATCTCATGCTTGGTTGGTGTCAG.............................................................................ATCGGAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461384" ref_strand="+" ref_description="SGN-E461384 [cPRO-8-E6]">
      <seq>gtaaagggaaacttgtcttacttgaccttgccaacaattcaattactgctagaggagcatttcatgttgccgaatacgtcaaaaaaagcaaaagcttactgtggttgaatctctatatgaatgacatcaaagatgaggngagctgaaaagattgcagaagctttgaaggagaatcgctcgataactaacgttgatcttgggggcaatgacatacatgctaagggtattagtgccatagcagaagttctaaaagataattctgtcattacctccttagaacnttggttacaaccccattggaccagagggggcaatggcattagcagaggtactcaagtttcatggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="58314" stop="56891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58115" g_stop="58110" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58109" i_stop="58013" i_length="97">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58012" g_stop="57882" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="137" r_length="131" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57881" i_stop="57610" i_length="272">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57609" g_stop="57550" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="198" r_length="61" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57549" i_stop="57415" i_length="135">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57414" g_stop="57340" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="273" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57339" i_stop="57267" i_length="73">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57266" g_stop="57191" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="350" r_length="77" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E461384" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58115" e_stop="58110"/>
          <exon e_start="58012" e_stop="57882"/>
          <exon e_start="57609" e_stop="57550"/>
          <exon e_start="57414" e_stop="57340"/>
          <exon e_start="57266" e_stop="57191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGGTTTGCTTATTGGATATCATTAACCATTCTCTTTAAACATATATTGGCGTTGTGTCCTTTGCATCTTTTTTGAAAGGTCACCATTATATGTCTGCAGGGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCAAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATTAAAGATGAGGTAATTGAACCACTTAAAACTTTCACAGTTTTCTTCCTTTATTATGTAAAAGACTCTTCTCAGCTAACCAAGCTTTTCACTTGAGAAACCAAACGTGTCCATTTTTGCATAGACGATGTATTTATTTTATCCACAGTTATATTTGAAGGATAAAGTTTAACCTGTCCCCATAAATAAGGTATTTGATTTCTTACGTCGCAGATCCAGACTCGATCTCTTGATATGCATTGACTTTCCCTTCTTTTTTTCTCCATTTACATCATATCCATCAGG-GAGCTGAAAAGATTGCAGAAGCTTTGAAGGAGAACCGCTCGATAACTAATGTTGATCTTGTGAGAATTGTTTCTTCTTTTCTATTTTATTTAATATTTTCTTGTTTTTGTTCACGGAAGAGGTTGGGTTTCTTAATCTTACCAGAGCATTATTTTCTATTTGCTCTTATTGCTGAAATTCTGTGAATTTTACAGGGGGGCAATGACATACATGCTAAGGGTATTAGTGCCATAGCAGAAGTTCTGAAAGATAATTCTGTCATTACCTCCGTGAGTTCATCTTACTTTTACCGATTTATTGGACCAAATCAAATACATTATCTTTAAAATTTCTCACAAACAGTTAGAAC-TTGGTTACAACCCCATTGGACCAGAGGGGGCAATGGCATTAGCAGAGGTACTCAAGTTTCATGGAAATG</genome_strand>
        <mrna_strand>GTAAAG.................................................................................................GGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCTAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATCAAAGATGAG................................................................................................................................................................................................................................................................................GNGAGCTGAAAAGATTGCAGAAGCTTTGAAGGAGAATCGCTCGATAACTAACGTTGATCTT.......................................................................................................................................GGGGGCAATGACATACATGCTAAGGGTATTAGTGCCATAGCAGAAGTTCTAAAAGATAATTCTGTCATTACCTCC.........................................................................TTAGAACNTTGGTTACAACCCCATTGGACCAGAGGGGGCAATGGCATTAGCAGAGGTACTCAAGTTTCATGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452088" ref_strand="+" ref_description="SGN-E452088 [cSTS-15-J9]">
      <seq>aaactttgctgctaatggaataactgcagatggattgaaggcctttgatggaatattgcaatcaaatattgctctaaagactcttaacctatctggaaatgctattggggatgaaggagccaagtgtctatgtgatatactggcaaataactctggtattcaaaagctccagctgaacagcactggcttaggagatgagggagccaaagccatcggtgaaatgctgaaaaaaaattcaactttgcgtgttcttgaactaaacaataatctgattgactattctggattttcaggtcttgctggatcacttcttgagaataaaactttacaatccttgcatctcaacggcaattatggtggtgctttaggggccgcagcactggctaaaggcttggagagcaataagtccttgagggaactttatttgcaggggaactctgttggcgatgaaggagtacgggcattaatctctggcctatctttgcgtaaagggaaacttgtcttacttgaccttgccaacaattcaattactgctagaggagcatttcatgttgccgaatacgtcaaaaaaagcaaaagcttactgtggttgaatctctatatgaatgacatcaaagatgagggagctgaaaagattgcagaagctttgaaggagaatcgctcgataactaacgttgatcttgggggcaatgacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="60047" stop="57242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59747" g_stop="59624" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59623" i_stop="59410" i_length="214">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59409" g_stop="59335" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="199" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59334" i_stop="59216" i_length="119">
            <donor d_prob="0.677" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59215" g_stop="59132" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="283" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59131" i_stop="59039" i_length="93">
            <donor d_prob="0.709" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59038" g_stop="58977" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="345" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58976" i_stop="58768" i_length="209">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58767" g_stop="58698" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="415" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58697" i_stop="58186" i_length="512">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58185" g_stop="58110" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="491" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58109" i_stop="58013" i_length="97">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58012" g_stop="57882" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="622" r_length="131" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="57881" i_stop="57610" i_length="272">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="57609" g_stop="57550" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="682" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="57549" i_stop="57415" i_length="135">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="57414" g_stop="57399" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="698" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E452088" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59747" e_stop="59624"/>
          <exon e_start="59409" e_stop="59335"/>
          <exon e_start="59215" e_stop="59132"/>
          <exon e_start="59038" e_stop="58977"/>
          <exon e_start="58767" e_stop="58698"/>
          <exon e_start="58185" e_stop="58110"/>
          <exon e_start="58012" e_stop="57882"/>
          <exon e_start="57609" e_stop="57550"/>
          <exon e_start="57414" e_stop="57399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTGCTGCTAATGGAATAACTGCAGATGGATTGAAGGCCTTTGATGGTATATTGCAATCAAATATTGCTCTAAAGACTCTTAACCTATCTGGAAATGCTATTGGGGATGAAGGAGCCAAGGTAATGCACAGATGATAGGTGAAAATCCAAAGCAGTGAGTTCTTGGAATACAGATGACTAATAAGCAGATCCTAACTTTCTCTTTGCACTTGGTCTAACTGTTATACCAAATTAACATGTGTATTTTAATATCATGCTTTGTATTGTATTTCTCATCTCCACCTTGGCACTTCAGGATCAATCATGACTATTTGGTGTTAATTTATGTTTGCAGTGTCTATGTGATATACTGGCAAATAACTCTGGTATTCAAAAGCTCCAGTTGAACAGCACTGGCTTAGGAGATGAGGTCTTGAACATGCCTTTAGCATTAAATTAAAGTTCTGTTGCTAACTTGCGATGGTATTTTCTGCTTTCTGGTAAATTATTGCCTAAATTTCTCTGCAATGGTTTGTCTGAATTTTACAGGGAGCCAAAGCCATCGGTGAAATGCTGAAAAAAAATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCTGTATGTTATTATGCAGAACTTGTGATTTGTATTTCCTAGTTATTATCATCTCGGTTTCTGAAGGAAAACATGTTTGATTTGGATATGGAATAGGGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAAGTAAGCAAAATTTGTTCTGCTGTCTTCTGTGCCCATCCTCATTTGTCATATGTCAAACGTAGCAGTTAATTATTTGTTTTTGCTTTATTGGTTTGGAGGGGGAGGGTGGGGGTGGGGGAGAAAGACGTGGATTTTAATTTGTGAGGGAAGGCATATTAATTTTTATTTCCCTTATATCTTTTAATTATGTGCTTTAATTAACTGTTCAGCGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGGGTATATTTCTAATCAATTCCTTCCTCCCACTGTGACCCTTCGCCTTTTGCTCTTTTTTCTGTTCTTGTAATTTGACTTAGCAAATAATTGAGCTTTTTGTTAGCCTTGATATCTTGCTTCTGTGTCATTGCAATGTTTCTTGTTATTCAACTTCTGCACTCATATTTCCTTCCTTTTTAATTTTTTTTGGAAACAACCTCCCTACCTCTACAAGGTATGAGTAAGGTCTTGTTGTTGTTATTCATGTTTCCATTTGATTGTATAGAAGAGCTTTTCTTTTCAAATTTTTCGATTTCCTCTGTGTCTGCTGACACTGTGATTAACTGTGAAATGCCCTCATGTTATTAAATAAACTTCTTTCGGCGGTTTCATAATGTTCCTCACCAACAATCCGAGGTTGAAGCTAGATCTGTTCTGCCCAAAATGGGAATGGGCTACTATTTACATATTACTGTATATCATAAACATGCACCTGCTATTCAAATGTGTTTGAAAAGATTTTTTATATGCAGGAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTGTCTTTGCGTAAAGGTTTGCTTATTGGATATCATTAACCATTCTCTTTAAACATATATTGGCGTTGTGTCCTTTGCATCTTTTTTGAAAGGTCACCATTATATGTCTGCAGGGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCAAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATTAAAGATGAGGTAATTGAACCACTTAAAACTTTCACAGTTTTCTTCCTTTATTATGTAAAAGACTCTTCTCAGCTAACCAAGCTTTTCACTTGAGAAACCAAACGTGTCCATTTTTGCATAGACGATGTATTTATTTTATCCACAGTTATATTTGAAGGATAAAGTTTAACCTGTCCCCATAAATAAGGTATTTGATTTCTTACGTCGCAGATCCAGACTCGATCTCTTGATATGCATTGACTTTCCCTTCTTTTTTTCTCCATTTACATCATATCCATCAGGGAGCTGAAAAGATTGCAGAAGCTTTGAAGGAGAACCGCTCGATAACTAATGTTGATCTTGTGAGAATTGTTTCTTCTTTTCTATTTTATTTAATATTTTCTTGTTTTTGTTCACGGAAGAGGTTGGGTTTCTTAATCTTACCAGAGCATTATTTTCTATTTGCTCTTATTGCTGAAATTCTGTGAATTTTACAGGGGGGCAATGACATAC</genome_strand>
        <mrna_strand>AAACTTTGCTGCTAATGGAATAACTGCAGATGGATTGAAGGCCTTTGATGGAATATTGCAATCAAATATTGCTCTAAAGACTCTTAACCTATCTGGAAATGCTATTGGGGATGAAGGAGCCAAG......................................................................................................................................................................................................................TGTCTATGTGATATACTGGCAAATAACTCTGGTATTCAAAAGCTCCAGCTGAACAGCACTGGCTTAGGAGATGAG.......................................................................................................................GGAGCCAAAGCCATCGGTGAAATGCTGAAAAAAAATTCAACTTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCT.............................................................................................GGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAA.................................................................................................................................................................................................................CGGCAATTATGGTGGTGCTTTAGGGGCCGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTATCTTTGCGTAAAG.................................................................................................GGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCTAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATCAAAGATGAG................................................................................................................................................................................................................................................................................GGAGCTGAAAAGATTGCAGAAGCTTTGAAGGAGAATCGCTCGATAACTAACGTTGATCTT.......................................................................................................................................GGGGGCAATGACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244914" ref_strand="+" ref_description="SGN-E244914 [cLEF-2-A21]">
      <seq>tctgttggcgatgaaggagtacgggcattaatctctggcctgtctttgcgtaaagggaaacttgtcttacttgaccttgccaacaattcaattactgcaagaggagcatttcatgttgccgaatacgtcaaaaaaagcaaaagcttactgtggttgaatctctatatgaatgacattaaagatgaggtaattgaaccacttaaaactttcacagttttcttcctttattatgtaaaagactcttctcagctaaccaagcttttcacttgagaaaccaaacgtgtccatttttgcatagacgatgtatttattttatccacagttatatttgaaggataaagtttaacctgtccccataaataaggtatttgatttcttacgtcgcagatccagactcgatctcttgatatgcattgactttcccttctttttttctccatttacatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="58464" stop="57318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58164" g_stop="58110" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58109" i_stop="58013" i_length="97">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58012" g_stop="57618" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="450" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E244914" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58164" e_stop="58110"/>
          <exon e_start="58012" e_stop="57618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTGTCTTTGCGTAAAGGTTTGCTTATTGGATATCATTAACCATTCTCTTTAAACATATATTGGCGTTGTGTCCTTTGCATCTTTTTTGAAAGGTCACCATTATATGTCTGCAGGGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCAAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATTAAAGATGAGGTAATTGAACCACTTAAAACTTTCACAGTTTTCTTCCTTTATTATGTAAAAGACTCTTCTCAGCTAACCAAGCTTTTCACTTGAGAAACCAAACGTGTCCATTTTTGCATAGACGATGTATTTATTTTATCCACAGTTATATTTGAAGGATAAAGTTTAACCTGTCCCCATAAATAAGGTATTTGATTTCTTACGTCGCAGATCCAGACTCGATCTCTTGATATGCATTGACTTTCCCTTCTTTTTTTCTCCATTTACATCATA</genome_strand>
        <mrna_strand>TCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTGTCTTTGCGTAAAG.................................................................................................GGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCAAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATTAAAGATGAGGTAATTGAACCACTTAAAACTTTCACAGTTTTCTTCCTTTATTATGTAAAAGACTCTTCTCAGCTAACCAAGCTTTTCACTTGAGAAACCAAACGTGTCCATTTTTGCATAGACGATGTATTTATTTTATCCACAGTTATATTTGAAGGATAAAGTTTAACCTGTCCCCATAAATAAGGTATTTGATTTCTTACGTCGCAGATCCAGACTCGATCTCTTGATATGCATTGACTTTCCCTTCTTTTTTTCTCCATTTACATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249109" ref_strand="+" ref_description="SGN-E249109 [cLEF-49-B14]">
      <seq>aaagggaaacttgtcttacttgaccttgccaacaattcagttactgcaagaggagcatttcatgttgccgaatacgtcaaaaaaagcaaaagcttactgtggttgaatctctatatgaatgacattaaagatgaggtaattgaaccacttaaaactttcacagttttcttcctttattatgtaaaagactcttctcagctaaccaagcttttcacttgagaaaccaaacgtgtccatttttgcatagacgatgtatttattttatccacagttatatttgaaggataaagtttaacctgtccccataaataaggtatttgatttcttacgtcgcagatccagactcgatctcttgatatgcattgactttcccttctttttttctccatttacatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="58314" stop="57318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58113" g_stop="58110" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58109" i_stop="58013" i_length="97">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58012" g_stop="57618" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="399" r_length="395" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E249109" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58113" e_stop="58110"/>
          <exon e_start="58012" e_stop="57618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTTTGCTTATTGGATATCATTAACCATTCTCTTTAAACATATATTGGCGTTGTGTCCTTTGCATCTTTTTTGAAAGGTCACCATTATATGTCTGCAGGGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCAAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATTAAAGATGAGGTAATTGAACCACTTAAAACTTTCACAGTTTTCTTCCTTTATTATGTAAAAGACTCTTCTCAGCTAACCAAGCTTTTCACTTGAGAAACCAAACGTGTCCATTTTTGCATAGACGATGTATTTATTTTATCCACAGTTATATTTGAAGGATAAAGTTTAACCTGTCCCCATAAATAAGGTATTTGATTTCTTACGTCGCAGATCCAGACTCGATCTCTTGATATGCATTGACTTTCCCTTCTTTTTTTCTCCATTTACATCATA</genome_strand>
        <mrna_strand>AAAG.................................................................................................GGAAACTTGTCTTACTTGACCTTGCCAACAATTCAGTTACTGCAAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATTAAAGATGAGGTAATTGAACCACTTAAAACTTTCACAGTTTTCTTCCTTTATTATGTAAAAGACTCTTCTCAGCTAACCAAGCTTTTCACTTGAGAAACCAAACGTGTCCATTTTTGCATAGACGATGTATTTATTTTATCCACAGTTATATTTGAAGGATAAAGTTTAACCTGTCCCCATAAATAAGGTATTTGATTTCTTACGTCGCAGATCCAGACTCGATCTCTTGATATGCATTGACTTTCCCTTCTTTTTTTCTCCATTTACATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374521" ref_strand="+" ref_description="SGN-E374521 [TUS-38-J18]">
      <seq>attcaaccttgcgtgttcttgaactaaacaataatctgattgactattctggattttcaggtcttgctggatcacttcttgagaataaaactttacaatccttgcatctcaacggcaattatggtggtgctttaggggctgcagcactggctaaaggcttggagagcaataagtccttgagggaactttatttgcaggggaactctgttggcgatgaaggagtacgggcattaatctctggcctgtctttgcgtaaagggaaacttgtcttacttgaccttgccaacaattcaattactgcaagaggagcatttcatgttgccgaatacgtcaaaaaaagcaaaagcttactgtggttgaatctctatatgaatgacattaaagatgaggtaattgaaccacttaaaactttcacagttttcttcctttattatgtaaaagactctcctcagctaaccaagcttttcacttgagaaaccaaacgtgtccatttttgcatagacgatgtatttattttatccacagttatatttgaaggataaagtttaacctgtccccataaataaggtatttgatttcttacgtcgcagatccagactcgatctcttgatatgcattgactttcccttctttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="59481" stop="57335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59181" g_stop="59132" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59131" i_stop="59039" i_length="93">
            <donor d_prob="0.709" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59038" g_stop="58977" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="112" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58976" i_stop="58768" i_length="209">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58767" g_stop="58698" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="182" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58697" i_stop="58186" i_length="512">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58185" g_stop="58110" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="258" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58109" i_stop="58013" i_length="97">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58012" g_stop="57635" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="636" r_length="378" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E374521" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59181" e_stop="59132"/>
          <exon e_start="59038" e_stop="58977"/>
          <exon e_start="58767" e_stop="58698"/>
          <exon e_start="58185" e_stop="58110"/>
          <exon e_start="58012" e_stop="57635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCTGTATGTTATTATGCAGAACTTGTGATTTGTATTTCCTAGTTATTATCATCTCGGTTTCTGAAGGAAAACATGTTTGATTTGGATATGGAATAGGGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAAGTAAGCAAAATTTGTTCTGCTGTCTTCTGTGCCCATCCTCATTTGTCATATGTCAAACGTAGCAGTTAATTATTTGTTTTTGCTTTATTGGTTTGGAGGGGGAGGGTGGGGGTGGGGGAGAAAGACGTGGATTTTAATTTGTGAGGGAAGGCATATTAATTTTTATTTCCCTTATATCTTTTAATTATGTGCTTTAATTAACTGTTCAGCGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGGGTATATTTCTAATCAATTCCTTCCTCCCACTGTGACCCTTCGCCTTTTGCTCTTTTTTCTGTTCTTGTAATTTGACTTAGCAAATAATTGAGCTTTTTGTTAGCCTTGATATCTTGCTTCTGTGTCATTGCAATGTTTCTTGTTATTCAACTTCTGCACTCATATTTCCTTCCTTTTTAATTTTTTTTGGAAACAACCTCCCTACCTCTACAAGGTATGAGTAAGGTCTTGTTGTTGTTATTCATGTTTCCATTTGATTGTATAGAAGAGCTTTTCTTTTCAAATTTTTCGATTTCCTCTGTGTCTGCTGACACTGTGATTAACTGTGAAATGCCCTCATGTTATTAAATAAACTTCTTTCGGCGGTTTCATAATGTTCCTCACCAACAATCCGAGGTTGAAGCTAGATCTGTTCTGCCCAAAATGGGAATGGGCTACTATTTACATATTACTGTATATCATAAACATGCACCTGCTATTCAAATGTGTTTGAAAAGATTTTTTATATGCAGGAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTGTCTTTGCGTAAAGGTTTGCTTATTGGATATCATTAACCATTCTCTTTAAACATATATTGGCGTTGTGTCCTTTGCATCTTTTTTGAAAGGTCACCATTATATGTCTGCAGGGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCAAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATTAAAGATGAGGTAATTGAACCACTTAAAACTTTCACAGTTTTCTTCCTTTATTATGTAAAAGACTCTTCTCAGCTAACCAAGCTTTTCACTTGAGAAACCAAACGTGTCCATTTTTGCATAGACGATGTATTTATTTTATCCACAGTTATATTTGAAGGATAAAGTTTAACCTGTCCCCATAAATAAGGTATTTGATTTCTTACGTCGCAGATCCAGACTCGATCTCTTGATATGCATTGACTTTCCCTTCTTTTTT</genome_strand>
        <mrna_strand>ATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCT.............................................................................................GGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAA.................................................................................................................................................................................................................CGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTGTCTTTGCGTAAAG.................................................................................................GGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCAAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATTAAAGATGAGGTAATTGAACCACTTAAAACTTTCACAGTTTTCTTCCTTTATTATGTAAAAGACTCTCCTCAGCTAACCAAGCTTTTCACTTGAGAAACCAAACGTGTCCATTTTTGCATAGACGATGTATTTATTTTATCCACAGTTATATTTGAAGGATAAAGTTTAACCTGTCCCCATAAATAAGGTATTTGATTTCTTACGTCGCAGATCCAGACTCGATCTCTTGATATGCATTGACTTTCCCTTCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244826" ref_strand="+" ref_description="SGN-E244826 [cLEF-2-O17]">
      <seq>tggatcacttcttgagaataaaactttacaatccttgcatctcaacggcaattatggtggtgctttaggggctgcagcactggctaaaggcttggagagcaataagtccttgagggaactttatttgcaggggaactctgttggcgatgaaggagtacgggcattaatctctggcctgtctttgcgtaaaggtcaccattatatgtctgcagggaaacttgtcttacttgaccttgccaacaattcaattactgcaagaggagcatttcatgttgccgaatacgtcaaaaaaagcaaaaagcttactgtggttgaatctctatatgaatgacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="59321" stop="57591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59021" g_stop="58977" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58976" i_stop="58768" i_length="209">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58767" g_stop="58698" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="115" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58697" i_stop="58186" i_length="512">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58185" g_stop="58110" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="191" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58109" i_stop="58034" i_length="76">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58033" g_stop="57891" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="335" r_length="144" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E244826" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59021" e_stop="58977"/>
          <exon e_start="58767" e_stop="58698"/>
          <exon e_start="58185" e_stop="58110"/>
          <exon e_start="58033" e_stop="57891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAAGTAAGCAAAATTTGTTCTGCTGTCTTCTGTGCCCATCCTCATTTGTCATATGTCAAACGTAGCAGTTAATTATTTGTTTTTGCTTTATTGGTTTGGAGGGGGAGGGTGGGGGTGGGGGAGAAAGACGTGGATTTTAATTTGTGAGGGAAGGCATATTAATTTTTATTTCCCTTATATCTTTTAATTATGTGCTTTAATTAACTGTTCAGCGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGGGTATATTTCTAATCAATTCCTTCCTCCCACTGTGACCCTTCGCCTTTTGCTCTTTTTTCTGTTCTTGTAATTTGACTTAGCAAATAATTGAGCTTTTTGTTAGCCTTGATATCTTGCTTCTGTGTCATTGCAATGTTTCTTGTTATTCAACTTCTGCACTCATATTTCCTTCCTTTTTAATTTTTTTTGGAAACAACCTCCCTACCTCTACAAGGTATGAGTAAGGTCTTGTTGTTGTTATTCATGTTTCCATTTGATTGTATAGAAGAGCTTTTCTTTTCAAATTTTTCGATTTCCTCTGTGTCTGCTGACACTGTGATTAACTGTGAAATGCCCTCATGTTATTAAATAAACTTCTTTCGGCGGTTTCATAATGTTCCTCACCAACAATCCGAGGTTGAAGCTAGATCTGTTCTGCCCAAAATGGGAATGGGCTACTATTTACATATTACTGTATATCATAAACATGCACCTGCTATTCAAATGTGTTTGAAAAGATTTTTTATATGCAGGAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTGTCTTTGCGTAAAGGTTTGCTTATTGGATATCATTAACCATTCTCTTTAAACATATATTGGCGTTGTGTCCTTTGCATCTTTTTTGAAAGGTCACCATTATATGTCTGCAGGGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCAAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGC-AAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATT</genome_strand>
        <mrna_strand>TGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAA.................................................................................................................................................................................................................CGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTGTCTTTGCGTAAAG............................................................................GTCACCATTATATGTCTGCAGGGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCAAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256252" ref_strand="+" ref_description="SGN-E256252 [cLEG-37-L21]">
      <seq>tagcatataatcagacagctgaggaagtaaactttgctgctaatggaataactgcagatggattgaaggcctttgatggtatattgcaatcaaatattgctctaaagactcttaacctatctggaaatgctattggggatgaaggagccaagtgtctatgtgatatactggcaaataactctggtattcaaaagctccagttgaacagcactggcttaggagatgagggagccaaagccatcggtgaaatgctgaaaaaaaattcaaccttgcgtgttcttgaactaaacaataatctgattgactattctggattttcaggtcttgctggatcacttcttgagaataaaactttacaatccttgcatctcaacggcaattatggtggtgctttaggggctgcagcactggctaaaggcttggagagcaataagtccttgagggaactttatttgcaggggaactctgttggcgatgaaggagtacgggcattaatctctggcctgtctttgcgtaaagggaaacttgtcttacttgaccttgccaacaattcaattactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="60064" stop="57670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59989" g_stop="59976" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59975" i_stop="59762" i_length="214">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59761" g_stop="59624" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="152" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59623" i_stop="59410" i_length="214">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59409" g_stop="59335" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="227" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59334" i_stop="59216" i_length="119">
            <donor d_prob="0.677" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59215" g_stop="59132" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="311" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59131" i_stop="59039" i_length="93">
            <donor d_prob="0.709" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59038" g_stop="58977" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="373" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58976" i_stop="58768" i_length="209">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58767" g_stop="58698" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="443" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58697" i_stop="58186" i_length="512">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58185" g_stop="58110" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="519" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="58109" i_stop="58013" i_length="97">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="58012" g_stop="57970" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="562" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E256252" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59989" e_stop="59976"/>
          <exon e_start="59761" e_stop="59624"/>
          <exon e_start="59409" e_stop="59335"/>
          <exon e_start="59215" e_stop="59132"/>
          <exon e_start="59038" e_stop="58977"/>
          <exon e_start="58767" e_stop="58698"/>
          <exon e_start="58185" e_stop="58110"/>
          <exon e_start="58012" e_stop="57970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCATATAATCAGGTAATGTCTTTTGTCCCCCCTCTCTGTTATCAGTGTAGAGTATGCCATTATTTATTACGGTCCATCCTGTTGACTCAAGAGGATGAAACCATAATGCTGTAATGCAGACAAGTAAAAATACAATCTTTAGCTTCTTTTTTTCTGGAAGTATGTTTTTGCGCAAGTTTGGTTCCTTTACCAATGTACACTGCATTTCCTTTCATGTGATTTCCAGACAGCTGAGGAAGTAAACTTTGCTGCTAATGGAATAACTGCAGATGGATTGAAGGCCTTTGATGGTATATTGCAATCAAATATTGCTCTAAAGACTCTTAACCTATCTGGAAATGCTATTGGGGATGAAGGAGCCAAGGTAATGCACAGATGATAGGTGAAAATCCAAAGCAGTGAGTTCTTGGAATACAGATGACTAATAAGCAGATCCTAACTTTCTCTTTGCACTTGGTCTAACTGTTATACCAAATTAACATGTGTATTTTAATATCATGCTTTGTATTGTATTTCTCATCTCCACCTTGGCACTTCAGGATCAATCATGACTATTTGGTGTTAATTTATGTTTGCAGTGTCTATGTGATATACTGGCAAATAACTCTGGTATTCAAAAGCTCCAGTTGAACAGCACTGGCTTAGGAGATGAGGTCTTGAACATGCCTTTAGCATTAAATTAAAGTTCTGTTGCTAACTTGCGATGGTATTTTCTGCTTTCTGGTAAATTATTGCCTAAATTTCTCTGCAATGGTTTGTCTGAATTTTACAGGGAGCCAAAGCCATCGGTGAAATGCTGAAAAAAAATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCTGTATGTTATTATGCAGAACTTGTGATTTGTATTTCCTAGTTATTATCATCTCGGTTTCTGAAGGAAAACATGTTTGATTTGGATATGGAATAGGGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAAGTAAGCAAAATTTGTTCTGCTGTCTTCTGTGCCCATCCTCATTTGTCATATGTCAAACGTAGCAGTTAATTATTTGTTTTTGCTTTATTGGTTTGGAGGGGGAGGGTGGGGGTGGGGGAGAAAGACGTGGATTTTAATTTGTGAGGGAAGGCATATTAATTTTTATTTCCCTTATATCTTTTAATTATGTGCTTTAATTAACTGTTCAGCGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGGGTATATTTCTAATCAATTCCTTCCTCCCACTGTGACCCTTCGCCTTTTGCTCTTTTTTCTGTTCTTGTAATTTGACTTAGCAAATAATTGAGCTTTTTGTTAGCCTTGATATCTTGCTTCTGTGTCATTGCAATGTTTCTTGTTATTCAACTTCTGCACTCATATTTCCTTCCTTTTTAATTTTTTTTGGAAACAACCTCCCTACCTCTACAAGGTATGAGTAAGGTCTTGTTGTTGTTATTCATGTTTCCATTTGATTGTATAGAAGAGCTTTTCTTTTCAAATTTTTCGATTTCCTCTGTGTCTGCTGACACTGTGATTAACTGTGAAATGCCCTCATGTTATTAAATAAACTTCTTTCGGCGGTTTCATAATGTTCCTCACCAACAATCCGAGGTTGAAGCTAGATCTGTTCTGCCCAAAATGGGAATGGGCTACTATTTACATATTACTGTATATCATAAACATGCACCTGCTATTCAAATGTGTTTGAAAAGATTTTTTATATGCAGGAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTGTCTTTGCGTAAAGGTTTGCTTATTGGATATCATTAACCATTCTCTTTAAACATATATTGGCGTTGTGTCCTTTGCATCTTTTTTGAAAGGTCACCATTATATGTCTGCAGGGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGC</genome_strand>
        <mrna_strand>TAGCATATAATCAG......................................................................................................................................................................................................................ACAGCTGAGGAAGTAAACTTTGCTGCTAATGGAATAACTGCAGATGGATTGAAGGCCTTTGATGGTATATTGCAATCAAATATTGCTCTAAAGACTCTTAACCTATCTGGAAATGCTATTGGGGATGAAGGAGCCAAG......................................................................................................................................................................................................................TGTCTATGTGATATACTGGCAAATAACTCTGGTATTCAAAAGCTCCAGTTGAACAGCACTGGCTTAGGAGATGAG.......................................................................................................................GGAGCCAAAGCCATCGGTGAAATGCTGAAAAAAAATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCT.............................................................................................GGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAA.................................................................................................................................................................................................................CGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTGTCTTTGCGTAAAG.................................................................................................GGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475242" ref_strand="+" ref_description="SGN-E475242 [cSTB-39-N11]">
      <seq>gaggaagtaaactttgctgctaatggaataactgcagatggattgaaggcctttgatggcatattgcaatcaaatattgctctaaagactcttaacctatctggaaatgctattggggatgaaggagccaagtgtctatgtgatatactggcaaataactctggtattcaaaagctccagctgaacagcactggcttaggagatgagggagccaaagccatcggtgaaatgctgaaaaaaaattcaactttgcgtgttcttgaactaaacaataatctgattgactattctggattttcaggtcttgctggatcacttcttgagaataaaactttacaatccttgcatctcaacggcaattatggtggtgctttaggggccgcagcactggctaaaggcttggagagcaataagtccttgagggaactttatttgcaggggaactctgttggcgatgaaggagtacgggcattaatctctggcctatctttgcgtaaagggaaacttgtcttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="60055" stop="57697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59755" g_stop="59624" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59623" i_stop="59410" i_length="214">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59409" g_stop="59335" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="207" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59334" i_stop="59216" i_length="119">
            <donor d_prob="0.677" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59215" g_stop="59132" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="291" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59131" i_stop="59039" i_length="93">
            <donor d_prob="0.709" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59038" g_stop="58977" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="353" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58976" i_stop="58768" i_length="209">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58767" g_stop="58698" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="423" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58697" i_stop="58186" i_length="512">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58185" g_stop="58110" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="499" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58109" i_stop="58013" i_length="97">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58012" g_stop="57997" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="515" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E475242" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59755" e_stop="59624"/>
          <exon e_start="59409" e_stop="59335"/>
          <exon e_start="59215" e_stop="59132"/>
          <exon e_start="59038" e_stop="58977"/>
          <exon e_start="58767" e_stop="58698"/>
          <exon e_start="58185" e_stop="58110"/>
          <exon e_start="58012" e_stop="57997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAAGTAAACTTTGCTGCTAATGGAATAACTGCAGATGGATTGAAGGCCTTTGATGGTATATTGCAATCAAATATTGCTCTAAAGACTCTTAACCTATCTGGAAATGCTATTGGGGATGAAGGAGCCAAGGTAATGCACAGATGATAGGTGAAAATCCAAAGCAGTGAGTTCTTGGAATACAGATGACTAATAAGCAGATCCTAACTTTCTCTTTGCACTTGGTCTAACTGTTATACCAAATTAACATGTGTATTTTAATATCATGCTTTGTATTGTATTTCTCATCTCCACCTTGGCACTTCAGGATCAATCATGACTATTTGGTGTTAATTTATGTTTGCAGTGTCTATGTGATATACTGGCAAATAACTCTGGTATTCAAAAGCTCCAGTTGAACAGCACTGGCTTAGGAGATGAGGTCTTGAACATGCCTTTAGCATTAAATTAAAGTTCTGTTGCTAACTTGCGATGGTATTTTCTGCTTTCTGGTAAATTATTGCCTAAATTTCTCTGCAATGGTTTGTCTGAATTTTACAGGGAGCCAAAGCCATCGGTGAAATGCTGAAAAAAAATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCTGTATGTTATTATGCAGAACTTGTGATTTGTATTTCCTAGTTATTATCATCTCGGTTTCTGAAGGAAAACATGTTTGATTTGGATATGGAATAGGGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAAGTAAGCAAAATTTGTTCTGCTGTCTTCTGTGCCCATCCTCATTTGTCATATGTCAAACGTAGCAGTTAATTATTTGTTTTTGCTTTATTGGTTTGGAGGGGGAGGGTGGGGGTGGGGGAGAAAGACGTGGATTTTAATTTGTGAGGGAAGGCATATTAATTTTTATTTCCCTTATATCTTTTAATTATGTGCTTTAATTAACTGTTCAGCGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGGGTATATTTCTAATCAATTCCTTCCTCCCACTGTGACCCTTCGCCTTTTGCTCTTTTTTCTGTTCTTGTAATTTGACTTAGCAAATAATTGAGCTTTTTGTTAGCCTTGATATCTTGCTTCTGTGTCATTGCAATGTTTCTTGTTATTCAACTTCTGCACTCATATTTCCTTCCTTTTTAATTTTTTTTGGAAACAACCTCCCTACCTCTACAAGGTATGAGTAAGGTCTTGTTGTTGTTATTCATGTTTCCATTTGATTGTATAGAAGAGCTTTTCTTTTCAAATTTTTCGATTTCCTCTGTGTCTGCTGACACTGTGATTAACTGTGAAATGCCCTCATGTTATTAAATAAACTTCTTTCGGCGGTTTCATAATGTTCCTCACCAACAATCCGAGGTTGAAGCTAGATCTGTTCTGCCCAAAATGGGAATGGGCTACTATTTACATATTACTGTATATCATAAACATGCACCTGCTATTCAAATGTGTTTGAAAAGATTTTTTATATGCAGGAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTGTCTTTGCGTAAAGGTTTGCTTATTGGATATCATTAACCATTCTCTTTAAACATATATTGGCGTTGTGTCCTTTGCATCTTTTTTGAAAGGTCACCATTATATGTCTGCAGGGAAACTTGTCTTACT</genome_strand>
        <mrna_strand>GAGGAAGTAAACTTTGCTGCTAATGGAATAACTGCAGATGGATTGAAGGCCTTTGATGGCATATTGCAATCAAATATTGCTCTAAAGACTCTTAACCTATCTGGAAATGCTATTGGGGATGAAGGAGCCAAG......................................................................................................................................................................................................................TGTCTATGTGATATACTGGCAAATAACTCTGGTATTCAAAAGCTCCAGCTGAACAGCACTGGCTTAGGAGATGAG.......................................................................................................................GGAGCCAAAGCCATCGGTGAAATGCTGAAAAAAAATTCAACTTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCT.............................................................................................GGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAA.................................................................................................................................................................................................................CGGCAATTATGGTGGTGCTTTAGGGGCCGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTATCTTTGCGTAAAG.................................................................................................GGAAACTTGTCTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295982" ref_strand="+" ref_description="SGN-E295982 [cLET-27-C8]">
      <seq>attcaaccttgcgtgttcttgaactaaacaataatctgattgactattctggattttcaggtcttgctggatcacttcttgagaataaaactttacaattcttgcatctcaacgggaattatggtggtgctttaagggctgcagcactggctaaaggcttggagagcaataagtccttgagggaactttatttgcaggggaactctgttggcgatgaatgagtacgggcattaatctctggcctgtctttgcggaaagggaaacttgtcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="59481" stop="57809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59181" g_stop="59132" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59131" i_stop="59039" i_length="93">
            <donor d_prob="0.709" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59038" g_stop="58977" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="112" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58976" i_stop="58768" i_length="209">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58767" g_stop="58698" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="182" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58697" i_stop="58186" i_length="512">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58185" g_stop="58110" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="258" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58109" i_stop="58013" i_length="97">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.917" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58012" g_stop="57998" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="273" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E295982" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59181" e_stop="59132"/>
          <exon e_start="59038" e_stop="58977"/>
          <exon e_start="58767" e_stop="58698"/>
          <exon e_start="58185" e_stop="58110"/>
          <exon e_start="58012" e_stop="57998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCTGTATGTTATTATGCAGAACTTGTGATTTGTATTTCCTAGTTATTATCATCTCGGTTTCTGAAGGAAAACATGTTTGATTTGGATATGGAATAGGGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAAGTAAGCAAAATTTGTTCTGCTGTCTTCTGTGCCCATCCTCATTTGTCATATGTCAAACGTAGCAGTTAATTATTTGTTTTTGCTTTATTGGTTTGGAGGGGGAGGGTGGGGGTGGGGGAGAAAGACGTGGATTTTAATTTGTGAGGGAAGGCATATTAATTTTTATTTCCCTTATATCTTTTAATTATGTGCTTTAATTAACTGTTCAGCGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGGGTATATTTCTAATCAATTCCTTCCTCCCACTGTGACCCTTCGCCTTTTGCTCTTTTTTCTGTTCTTGTAATTTGACTTAGCAAATAATTGAGCTTTTTGTTAGCCTTGATATCTTGCTTCTGTGTCATTGCAATGTTTCTTGTTATTCAACTTCTGCACTCATATTTCCTTCCTTTTTAATTTTTTTTGGAAACAACCTCCCTACCTCTACAAGGTATGAGTAAGGTCTTGTTGTTGTTATTCATGTTTCCATTTGATTGTATAGAAGAGCTTTTCTTTTCAAATTTTTCGATTTCCTCTGTGTCTGCTGACACTGTGATTAACTGTGAAATGCCCTCATGTTATTAAATAAACTTCTTTCGGCGGTTTCATAATGTTCCTCACCAACAATCCGAGGTTGAAGCTAGATCTGTTCTGCCCAAAATGGGAATGGGCTACTATTTACATATTACTGTATATCATAAACATGCACCTGCTATTCAAATGTGTTTGAAAAGATTTTTTATATGCAGGAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTGTCTTTGCGTAAAGGTTTGCTTATTGGATATCATTAACCATTCTCTTTAAACATATATTGGCGTTGTGTCCTTTGCATCTTTTTTGAAAGGTCACCATTATATGTCTGCAGGGAAACTTGTCTTAC</genome_strand>
        <mrna_strand>ATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCT.............................................................................................GGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATTCTTGCATCTCAA.................................................................................................................................................................................................................CGGGAATTATGGTGGTGCTTTAAGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAATGAGTACGGGCATTAATCTCTGGCCTGTCTTTGCGGAAAG.................................................................................................GGAAACTTGTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243010" ref_strand="+" ref_description="SGN-E243010 [cLEF-1-D19]">
      <seq>ataatcagacagctgaggaagtaaactttgctgctaatggaataactgcagatggattgaaggcctttgatggtatattgcaatcaaatattgctctaaagactcttaacctatctggaaatgctattggggatgaaggagccaagtgtctatgtgatatactggcaaataactctggtattcaaaagctccagttgaacagcactggcttaggagatgagggagccaaagccatcggtgaaatgctgaaaaaaaattcaaccttgcgtgttcttgaactaaacaataatctgattgactattctggattttcaggtcttgctggatcacttcttgagaataaaactttacaatccttgcatctcaacggcaattatggtggtgctttaggggctgcagcactggctaaaggcttggagagcaataagtccttgagggaactttatttgcaggggaactctgttggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="60064" stop="57855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59983" g_stop="59976" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59975" i_stop="59762" i_length="214">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59761" g_stop="59624" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="146" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59623" i_stop="59410" i_length="214">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59409" g_stop="59335" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="221" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59334" i_stop="59216" i_length="119">
            <donor d_prob="0.677" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59215" g_stop="59132" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="305" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59131" i_stop="59039" i_length="93">
            <donor d_prob="0.709" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59038" g_stop="58977" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="367" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58976" i_stop="58768" i_length="209">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58767" g_stop="58698" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="437" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58697" i_stop="58186" i_length="512">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58185" g_stop="58155" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="468" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E243010" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59983" e_stop="59976"/>
          <exon e_start="59761" e_stop="59624"/>
          <exon e_start="59409" e_stop="59335"/>
          <exon e_start="59215" e_stop="59132"/>
          <exon e_start="59038" e_stop="58977"/>
          <exon e_start="58767" e_stop="58698"/>
          <exon e_start="58185" e_stop="58155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCAGGTAATGTCTTTTGTCCCCCCTCTCTGTTATCAGTGTAGAGTATGCCATTATTTATTACGGTCCATCCTGTTGACTCAAGAGGATGAAACCATAATGCTGTAATGCAGACAAGTAAAAATACAATCTTTAGCTTCTTTTTTTCTGGAAGTATGTTTTTGCGCAAGTTTGGTTCCTTTACCAATGTACACTGCATTTCCTTTCATGTGATTTCCAGACAGCTGAGGAAGTAAACTTTGCTGCTAATGGAATAACTGCAGATGGATTGAAGGCCTTTGATGGTATATTGCAATCAAATATTGCTCTAAAGACTCTTAACCTATCTGGAAATGCTATTGGGGATGAAGGAGCCAAGGTAATGCACAGATGATAGGTGAAAATCCAAAGCAGTGAGTTCTTGGAATACAGATGACTAATAAGCAGATCCTAACTTTCTCTTTGCACTTGGTCTAACTGTTATACCAAATTAACATGTGTATTTTAATATCATGCTTTGTATTGTATTTCTCATCTCCACCTTGGCACTTCAGGATCAATCATGACTATTTGGTGTTAATTTATGTTTGCAGTGTCTATGTGATATACTGGCAAATAACTCTGGTATTCAAAAGCTCCAGTTGAACAGCACTGGCTTAGGAGATGAGGTCTTGAACATGCCTTTAGCATTAAATTAAAGTTCTGTTGCTAACTTGCGATGGTATTTTCTGCTTTCTGGTAAATTATTGCCTAAATTTCTCTGCAATGGTTTGTCTGAATTTTACAGGGAGCCAAAGCCATCGGTGAAATGCTGAAAAAAAATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCTGTATGTTATTATGCAGAACTTGTGATTTGTATTTCCTAGTTATTATCATCTCGGTTTCTGAAGGAAAACATGTTTGATTTGGATATGGAATAGGGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAAGTAAGCAAAATTTGTTCTGCTGTCTTCTGTGCCCATCCTCATTTGTCATATGTCAAACGTAGCAGTTAATTATTTGTTTTTGCTTTATTGGTTTGGAGGGGGAGGGTGGGGGTGGGGGAGAAAGACGTGGATTTTAATTTGTGAGGGAAGGCATATTAATTTTTATTTCCCTTATATCTTTTAATTATGTGCTTTAATTAACTGTTCAGCGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGGGTATATTTCTAATCAATTCCTTCCTCCCACTGTGACCCTTCGCCTTTTGCTCTTTTTTCTGTTCTTGTAATTTGACTTAGCAAATAATTGAGCTTTTTGTTAGCCTTGATATCTTGCTTCTGTGTCATTGCAATGTTTCTTGTTATTCAACTTCTGCACTCATATTTCCTTCCTTTTTAATTTTTTTTGGAAACAACCTCCCTACCTCTACAAGGTATGAGTAAGGTCTTGTTGTTGTTATTCATGTTTCCATTTGATTGTATAGAAGAGCTTTTCTTTTCAAATTTTTCGATTTCCTCTGTGTCTGCTGACACTGTGATTAACTGTGAAATGCCCTCATGTTATTAAATAAACTTCTTTCGGCGGTTTCATAATGTTCCTCACCAACAATCCGAGGTTGAAGCTAGATCTGTTCTGCCCAAAATGGGAATGGGCTACTATTTACATATTACTGTATATCATAAACATGCACCTGCTATTCAAATGTGTTTGAAAAGATTTTTTATATGCAGGAACTTTATTTGCAGGGGAACTCTGTTGGCG</genome_strand>
        <mrna_strand>ATAATCAG......................................................................................................................................................................................................................ACAGCTGAGGAAGTAAACTTTGCTGCTAATGGAATAACTGCAGATGGATTGAAGGCCTTTGATGGTATATTGCAATCAAATATTGCTCTAAAGACTCTTAACCTATCTGGAAATGCTATTGGGGATGAAGGAGCCAAG......................................................................................................................................................................................................................TGTCTATGTGATATACTGGCAAATAACTCTGGTATTCAAAAGCTCCAGTTGAACAGCACTGGCTTAGGAGATGAG.......................................................................................................................GGAGCCAAAGCCATCGGTGAAATGCTGAAAAAAAATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCT.............................................................................................GGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAA.................................................................................................................................................................................................................CGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTTATTTGCAGGGGAACTCTGTTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258161" ref_strand="+" ref_description="SGN-E258161 [cLEG-49-K15]">
      <seq>gagactagttcctgaggcttaatgactttgctaaagagcttagatctttcagcattgttgacatgtcaggtcgtaactttggagacgaggggctctttttcctagcagagagtttagcatataatcagacagctgaggaagtaaactttgctgctaatggaataactgcagatggattgaaggcctttgatggtatattgcaatcaaatattgctctaaagactcttaacctatctggaaatgctattggggatgaaggagccaagtgtctatgtgatatactggcaaataactctggtattcaaaagctccagttgaacagcactggcttaggagatgagggagccaaagccatcggtgaaatgctgaaaaaaaattcaaccttgcgtgttcttgaactaaacaataatctgattgactattctggattttcaggtcttgctggatcacttcttgagaataaaactttacaatccttgcatctcaacggcaattatggtggtgctttaagggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="60855" stop="58440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60566" g_stop="60498" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60497" i_stop="60035" i_length="463">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.194" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60034" g_stop="59976" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="128" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59975" i_stop="59762" i_length="214">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59761" g_stop="59624" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="266" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59623" i_stop="59410" i_length="214">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59409" g_stop="59335" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="341" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59334" i_stop="59216" i_length="119">
            <donor d_prob="0.677" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59215" g_stop="59132" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="425" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59131" i_stop="59039" i_length="93">
            <donor d_prob="0.709" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59038" g_stop="58977" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="487" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58976" i_stop="58768" i_length="209">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58767" g_stop="58740" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="515" r_length="28" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E258161" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60566" e_stop="60498"/>
          <exon e_start="60034" e_stop="59976"/>
          <exon e_start="59761" e_stop="59624"/>
          <exon e_start="59409" e_stop="59335"/>
          <exon e_start="59215" e_stop="59132"/>
          <exon e_start="59038" e_stop="58977"/>
          <exon e_start="58767" e_stop="58740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATCCAAGCTGAGGCTTAATGACTTTGCTAAAGAGCTTAGATCTTTCAGCATTGTTGACATGTCAGGTAAAATTGCAGTCAGTTCTGGCTCAGCTGCTTCAAATATTAAAGTTGGTGGTCGTCAATGCTAAATGCTTTCATAATGAATATCTTCCTTTTTTATACCTTTGATCAAAAACTTTCTATCATGTGTAATTTTCAGAAATGTGATCACGATGTTAAAGGATTTGCCTTGACTTATTAAATTCTCAAGTCCCTGTTCCACCTCTTTAGAAAGTTCAACATATAAAGACCAAAGCTTTACCTTGATTTATGATTGAAAAACATGTTCTGCATACTGATAGTGTCTGAAGGAAATCTTCCAAACTTGTTTCATTTATAAGCTTCCCCCACCAAGTGCGCGTCACACCAAAACCAAAGTTTTTCTGCATCTTCCTTGTATTGTGATTCTACATGCTTTGCATACTGATTAAGGATTAATTTTGCAAGTCGCGAGAGGTATTGGGTTGAACGTTTTAGGCTTTGGCAGGTCGTAACTTTGGAGACGAGGGGCTCTTTTTCCTAGCAGAGAGTTTAGCATATAATCAGGTAATGTCTTTTGTCCCCCCTCTCTGTTATCAGTGTAGAGTATGCCATTATTTATTACGGTCCATCCTGTTGACTCAAGAGGATGAAACCATAATGCTGTAATGCAGACAAGTAAAAATACAATCTTTAGCTTCTTTTTTTCTGGAAGTATGTTTTTGCGCAAGTTTGGTTCCTTTACCAATGTACACTGCATTTCCTTTCATGTGATTTCCAGACAGCTGAGGAAGTAAACTTTGCTGCTAATGGAATAACTGCAGATGGATTGAAGGCCTTTGATGGTATATTGCAATCAAATATTGCTCTAAAGACTCTTAACCTATCTGGAAATGCTATTGGGGATGAAGGAGCCAAGGTAATGCACAGATGATAGGTGAAAATCCAAAGCAGTGAGTTCTTGGAATACAGATGACTAATAAGCAGATCCTAACTTTCTCTTTGCACTTGGTCTAACTGTTATACCAAATTAACATGTGTATTTTAATATCATGCTTTGTATTGTATTTCTCATCTCCACCTTGGCACTTCAGGATCAATCATGACTATTTGGTGTTAATTTATGTTTGCAGTGTCTATGTGATATACTGGCAAATAACTCTGGTATTCAAAAGCTCCAGTTGAACAGCACTGGCTTAGGAGATGAGGTCTTGAACATGCCTTTAGCATTAAATTAAAGTTCTGTTGCTAACTTGCGATGGTATTTTCTGCTTTCTGGTAAATTATTGCCTAAATTTCTCTGCAATGGTTTGTCTGAATTTTACAGGGAGCCAAAGCCATCGGTGAAATGCTGAAAAAAAATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCTGTATGTTATTATGCAGAACTTGTGATTTGTATTTCCTAGTTATTATCATCTCGGTTTCTGAAGGAAAACATGTTTGATTTGGATATGGAATAGGGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAAGTAAGCAAAATTTGTTCTGCTGTCTTCTGTGCCCATCCTCATTTGTCATATGTCAAACGTAGCAGTTAATTATTTGTTTTTGCTTTATTGGTTTGGAGGGGGAGGGTGGGGGTGGGGGAGAAAGACGTGGATTTTAATTTGTGAGGGAAGGCATATTAATTTTTATTTCCCTTATATCTTTTAATTATGTGCTTTAATTAACTGTTCAGCGGCAATTATGGTGGTGCTTTAGGGGCT</genome_strand>
        <mrna_strand>GAGACTAGTTCCTGAGGCTTAATGACTTTGCTAAAGAGCTTAGATCTTTCAGCATTGTTGACATGTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTAACTTTGGAGACGAGGGGCTCTTTTTCCTAGCAGAGAGTTTAGCATATAATCAG......................................................................................................................................................................................................................ACAGCTGAGGAAGTAAACTTTGCTGCTAATGGAATAACTGCAGATGGATTGAAGGCCTTTGATGGTATATTGCAATCAAATATTGCTCTAAAGACTCTTAACCTATCTGGAAATGCTATTGGGGATGAAGGAGCCAAG......................................................................................................................................................................................................................TGTCTATGTGATATACTGGCAAATAACTCTGGTATTCAAAAGCTCCAGTTGAACAGCACTGGCTTAGGAGATGAG.......................................................................................................................GGAGCCAAAGCCATCGGTGAAATGCTGAAAAAAAATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCT.............................................................................................GGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAA.................................................................................................................................................................................................................CGGCAATTATGGTGGTGCTTTAAGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275866" ref_strand="+" ref_description="SGN-E275866 [cLEN-18-N18]">
      <seq>aaattcttctacccaaaccagccaatactacatcagaagaaagcaagtctactcagggattgaagtggtccattgccgctgggacaaacttgttgcctggttttggtgcaaagattgaaagagaatccaagctgaggcttaatgactttgctaaagagcttagatctttcagcattgttgacatgtcaggtcgtaactatggagacgaggggctctttttcctagcagagagtttagcatataatcagacagctgaggaagtaaactttgctgctaatggaataactgcagatggattgaaggcctttgatggtatattgcaatcaaatattgctctaaagactcttaacctatctggaaatgctattggggatgaaggagccaagtgtctatgtgatatactggcaaataactctggtattcaaaagctccagttgaacagcactggcttaggagatgagggagccaaagccatcggtgaaatgctgaaaaaaaattcaaccttgcgtgttcttgaactaaacaataatctgattgactattctggatattcaggtcttgctggatcacttcttgaaaataaaactttacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="60986" stop="58689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60686" g_stop="60498" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60497" i_stop="60035" i_length="463">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.194" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60034" g_stop="59976" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="248" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59975" i_stop="59762" i_length="214">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59761" g_stop="59624" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="386" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59623" i_stop="59410" i_length="214">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59409" g_stop="59335" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="461" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59334" i_stop="59216" i_length="119">
            <donor d_prob="0.677" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59215" g_stop="59132" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="545" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59131" i_stop="59039" i_length="93">
            <donor d_prob="0.709" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59038" g_stop="58989" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="595" r_length="50" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E275866" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60686" e_stop="60498"/>
          <exon e_start="60034" e_stop="59976"/>
          <exon e_start="59761" e_stop="59624"/>
          <exon e_start="59409" e_stop="59335"/>
          <exon e_start="59215" e_stop="59132"/>
          <exon e_start="59038" e_stop="58989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTTCTACCCAAACCAGCCAATACTACATCAGAAGAAAGCAAGTCTACTCAGGGATTGAAGTGGTCCATTGCCGCTGGGACAAACTTGTTGCCTGGTTTTGGTGCAAAGATTGAAAGAGAATCCAAGCTGAGGCTTAATGACTTTGCTAAAGAGCTTAGATCTTTCAGCATTGTTGACATGTCAGGTAAAATTGCAGTCAGTTCTGGCTCAGCTGCTTCAAATATTAAAGTTGGTGGTCGTCAATGCTAAATGCTTTCATAATGAATATCTTCCTTTTTTATACCTTTGATCAAAAACTTTCTATCATGTGTAATTTTCAGAAATGTGATCACGATGTTAAAGGATTTGCCTTGACTTATTAAATTCTCAAGTCCCTGTTCCACCTCTTTAGAAAGTTCAACATATAAAGACCAAAGCTTTACCTTGATTTATGATTGAAAAACATGTTCTGCATACTGATAGTGTCTGAAGGAAATCTTCCAAACTTGTTTCATTTATAAGCTTCCCCCACCAAGTGCGCGTCACACCAAAACCAAAGTTTTTCTGCATCTTCCTTGTATTGTGATTCTACATGCTTTGCATACTGATTAAGGATTAATTTTGCAAGTCGCGAGAGGTATTGGGTTGAACGTTTTAGGCTTTGGCAGGTCGTAACTTTGGAGACGAGGGGCTCTTTTTCCTAGCAGAGAGTTTAGCATATAATCAGGTAATGTCTTTTGTCCCCCCTCTCTGTTATCAGTGTAGAGTATGCCATTATTTATTACGGTCCATCCTGTTGACTCAAGAGGATGAAACCATAATGCTGTAATGCAGACAAGTAAAAATACAATCTTTAGCTTCTTTTTTTCTGGAAGTATGTTTTTGCGCAAGTTTGGTTCCTTTACCAATGTACACTGCATTTCCTTTCATGTGATTTCCAGACAGCTGAGGAAGTAAACTTTGCTGCTAATGGAATAACTGCAGATGGATTGAAGGCCTTTGATGGTATATTGCAATCAAATATTGCTCTAAAGACTCTTAACCTATCTGGAAATGCTATTGGGGATGAAGGAGCCAAGGTAATGCACAGATGATAGGTGAAAATCCAAAGCAGTGAGTTCTTGGAATACAGATGACTAATAAGCAGATCCTAACTTTCTCTTTGCACTTGGTCTAACTGTTATACCAAATTAACATGTGTATTTTAATATCATGCTTTGTATTGTATTTCTCATCTCCACCTTGGCACTTCAGGATCAATCATGACTATTTGGTGTTAATTTATGTTTGCAGTGTCTATGTGATATACTGGCAAATAACTCTGGTATTCAAAAGCTCCAGTTGAACAGCACTGGCTTAGGAGATGAGGTCTTGAACATGCCTTTAGCATTAAATTAAAGTTCTGTTGCTAACTTGCGATGGTATTTTCTGCTTTCTGGTAAATTATTGCCTAAATTTCTCTGCAATGGTTTGTCTGAATTTTACAGGGAGCCAAAGCCATCGGTGAAATGCTGAAAAAAAATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCTGTATGTTATTATGCAGAACTTGTGATTTGTATTTCCTAGTTATTATCATCTCGGTTTCTGAAGGAAAACATGTTTGATTTGGATATGGAATAGGGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATC</genome_strand>
        <mrna_strand>AAATTCTTCTACCCAAACCAGCCAATACTACATCAGAAGAAAGCAAGTCTACTCAGGGATTGAAGTGGTCCATTGCCGCTGGGACAAACTTGTTGCCTGGTTTTGGTGCAAAGATTGAAAGAGAATCCAAGCTGAGGCTTAATGACTTTGCTAAAGAGCTTAGATCTTTCAGCATTGTTGACATGTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTAACTATGGAGACGAGGGGCTCTTTTTCCTAGCAGAGAGTTTAGCATATAATCAG......................................................................................................................................................................................................................ACAGCTGAGGAAGTAAACTTTGCTGCTAATGGAATAACTGCAGATGGATTGAAGGCCTTTGATGGTATATTGCAATCAAATATTGCTCTAAAGACTCTTAACCTATCTGGAAATGCTATTGGGGATGAAGGAGCCAAG......................................................................................................................................................................................................................TGTCTATGTGATATACTGGCAAATAACTCTGGTATTCAAAAGCTCCAGTTGAACAGCACTGGCTTAGGAGATGAG.......................................................................................................................GGAGCCAAAGCCATCGGTGAAATGCTGAAAAAAAATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCT.............................................................................................GGATATTCAGGTCTTGCTGGATCACTTCTTGAAAATAAAACTTTACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486507" ref_strand="+" ref_description="SGN-E486507 [cSTE-22-I20]">
      <seq>cgcgctttatctcctcttctggaactctcccttcgttcctctcactgtctaactcactcattgagtctctccatgggctcatcttctacattctctctgtgctctcatccaacggtgaattttgaatttaatggtagaaaagtcggatacggattgcagaaatcgttgagcagttcatccagttattgtttgattcatatttcgccgatttgtattagtagaagaagaaaatgcttgcaattgagacgtgtaattgttagagctgcttcgtcgtctagtactggtccgagacgttcgacgaatactcggagagtttacaaggaatcacaagctcaaacgccagcattgccggttgacagaattgtttcgtttgttgtgcccgctggtgcctttgtggttatctcttttgttttgtggaagctggtggagaaagttcttctacccaaaccagccaagactacatcagaagaaagcaagtctactcagggattgaagtggtccattgccgctgggacaaacttgttgcctggttttggtgcaaagattgaaagagaatccaagctgaggcttaatgactttgctaaagagcttagatctttcagcattgttgacatgtcaggtcgtaactttggagatgaggggctctttttcctagcagagagtttagcatataatcagacagccgaggaaagtaactttgctgctaatggactaactgcagatggattgaaggcctttgatggcatattgcaatcaaatattgctctaaagactcttaacctatctggaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="62655" stop="59346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62355" g_stop="62242" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62241" i_stop="62164" i_length="78">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62163" g_stop="61866" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="409" r_length="295" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61865" i_stop="60708" i_length="1158">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="0.306" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60707" g_stop="60498" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="619" r_length="210" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60497" i_stop="60035" i_length="463">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.194" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60034" g_stop="59976" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="678" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59975" i_stop="59762" i_length="214">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59761" g_stop="59646" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="794" r_length="116" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E486507" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62355" e_stop="62242"/>
          <exon e_start="62163" e_stop="61866"/>
          <exon e_start="60707" e_stop="60498"/>
          <exon e_start="60034" e_stop="59976"/>
          <exon e_start="59761" e_stop="59646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGCTTTATCTCCTCTTCTGGAACTCTCTCTTCGTTCCTCTCACAGTCTCACTCACTCATTGAGTCTCTCCATGGGCTCATCTTCTACATTCTCTCTGTGTTCTCATCCGACGGTACTTTTCTCTACTTTGTTAACTTACTCGAACTTACAATTATGATTAAATTCTCACTTTTTTTTCGTTAATTTTTAGGTGAATTTTGAATTTAATGGTAGAAAAGTTGGATACGGATTGCAGAAATCGTTGAGTAGTTCATCCAGTTATTGTTTGATTCATATTTCGCCGATTAGTATAAGTAGTAGAAGAAGAAAATGCGTGCAATTGAGACGTGTAACTGTTAGAGCTGCTTCGTCGTCTAGTACTGGTTCGAGACGTTCGATGAGTACTCGGAGAGTTTACAAGGAATCACAAGCTCAAACGCCAGCATTACCTGTTGACAGAATTGTTTCGTTTGTTGTGCCCGCTGGTGCTTTTGTGGTTATCTCTTTTGGTATTGATATTTTGCCTATTTTCATCTCTGATAGCTTTTTCTTATGCTGAATTGAGCTTGCGCTTGAGTACATTTGATTATCATTACTAGTGATTGAGCTTGCGCTTGAGTACATTTGATTATCATTACTAGTGTTGGAGCAATAAATAAAATAAGGAGTTAAAAATTGCTACTTCTGCCTTTTAACTTGATAGCGAAAAAGAAGAATTTTGAATTTGTGGTCTAAAATACTAATACTTGATTACATGTGCACCTATACATCATCCGAGAGATTTCCTTCCGGTGGTTTAATTATAGCTTCCTTTACATGTGTTGAAAAACACTTTCTTTCATTATTCAATTACCAGTAACCTTTAGTTGACAAAAATTTCAACTTTCAACCTTCTTTTCTTTTCCATGATCATCCACTACTAATTAGGGTGACTGCTTATGTTCTACTTACTTTTCTAGTTATTTGACCATCCTGAATATGAAGGAGCATGCTTGAGGTTTAGTGAATAGGTAAAAATGTTGTGTAAGATATTCTTAATAATTATGTTTTATTAGTTGGGAGCGCGGTATTAGTAAAGTTTCCTTCTTAATTTAGTTCAGAATTTCTATATGCGGAGCTCCTTGAATGCGGTTAAACCTTTAATTACAAGAGCTCATTTCTCTCTTCTTTTTTTACAATGTCAAATTCTAATAAACAGTTAATCAAACACTGGTACTGTTGCATCTAATTTTTCTTAACATTCAAAGTTCTTACATTTCCATATCCAAAGATGTTGCTCCATACTTCTATTCTATATGATGCGGCTGAATTCCTCTTTCATTGCAAATTACCTCTATGAATAACTCTGAGCTCTTTCTGCCCAAAAAATTGAGGAGCTGCTTAACTTGCATCTGCAGATAGAATAAGTTTCTTAGTTTTACCACAGTGTTGCGCTGGTTCAGTCATTGACTATGGGCCCTGGCCATTTCTATTGCTGCACCCTTCCCAATGAACTCGTTATAAGTTATATCCTCTTCCACCTGGCATCCTTTCTCGCGGAGGTTGAATCTTGTGAAAATGTGGCTGCTAGACTGAAGATCTTCCTCTTATGAATTGTGACTGATATAGAGATCTTAAGTAGAAGGAAGATTCTCTATATCGTACTAATCTATGTGTTCAGTTGACAGTTTTGTGGAAGCTGGTGGAGAAAATTCTTCTACCCAAACCAGCCAATACTACATCAGAAGAAAGCAAGTCTACTCAGGGATTGAAGTGGTCCATTGCCGCTGGGACAAACTTGTTGCCTGGTTTTGGTGCAAAGATTGAAAGAGAATCCAAGCTGAGGCTTAATGACTTTGCTAAAGAGCTTAGATCTTTCAGCATTGTTGACATGTCAGGTAAAATTGCAGTCAGTTCTGGCTCAGCTGCTTCAAATATTAAAGTTGGTGGTCGTCAATGCTAAATGCTTTCATAATGAATATCTTCCTTTTTTATACCTTTGATCAAAAACTTTCTATCATGTGTAATTTTCAGAAATGTGATCACGATGTTAAAGGATTTGCCTTGACTTATTAAATTCTCAAGTCCCTGTTCCACCTCTTTAGAAAGTTCAACATATAAAGACCAAAGCTTTACCTTGATTTATGATTGAAAAACATGTTCTGCATACTGATAGTGTCTGAAGGAAATCTTCCAAACTTGTTTCATTTATAAGCTTCCCCCACCAAGTGCGCGTCACACCAAAACCAAAGTTTTTCTGCATCTTCCTTGTATTGTGATTCTACATGCTTTGCATACTGATTAAGGATTAATTTTGCAAGTCGCGAGAGGTATTGGGTTGAACGTTTTAGGCTTTGGCAGGTCGTAACTTTGGAGACGAGGGGCTCTTTTTCCTAGCAGAGAGTTTAGCATATAATCAGGTAATGTCTTTTGTCCCCCCTCTCTGTTATCAGTGTAGAGTATGCCATTATTTATTACGGTCCATCCTGTTGACTCAAGAGGATGAAACCATAATGCTGTAATGCAGACAAGTAAAAATACAATCTTTAGCTTCTTTTTTTCTGGAAGTATGTTTTTGCGCAAGTTTGGTTCCTTTACCAATGTACACTGCATTTCCTTTCATGTGATTTCCAGACAGCTGAGGAAGTAAACTTTGCTGCTAATGGAATAACTGCAGATGGATTGAAGGCCTTTGATGGTATATTGCAATCAAATATTGCTCTAAAGACTCTTAACCTATCTGGAAATGC</genome_strand>
        <mrna_strand>CGCGCTTTATCTCCTCTTCTGGAACTCTCCCTTCGTTCCTCTCACTGTCTAACTCACTCATTGAGTCTCTCCATGGGCTCATCTTCTACATTCTCTCTGTGCTCTCATCCAACG..............................................................................GTGAATTTTGAATTTAATGGTAGAAAAGTCGGATACGGATTGCAGAAATCGTTGAGCAGTTCATCCAGTTATTGTTTGATTCATATTTCGCCGATTTGTAT---TAGTAGAAGAAGAAAATGCTTGCAATTGAGACGTGTAATTGTTAGAGCTGCTTCGTCGTCTAGTACTGGTCCGAGACGTTCGACGAATACTCGGAGAGTTTACAAGGAATCACAAGCTCAAACGCCAGCATTGCCGGTTGACAGAATTGTTTCGTTTGTTGTGCCCGCTGGTGCCTTTGTGGTTATCTCTTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTGGAAGCTGGTGGAGAAAGTTCTTCTACCCAAACCAGCCAAGACTACATCAGAAGAAAGCAAGTCTACTCAGGGATTGAAGTGGTCCATTGCCGCTGGGACAAACTTGTTGCCTGGTTTTGGTGCAAAGATTGAAAGAGAATCCAAGCTGAGGCTTAATGACTTTGCTAAAGAGCTTAGATCTTTCAGCATTGTTGACATGTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTAACTTTGGAGATGAGGGGCTCTTTTTCCTAGCAGAGAGTTTAGCATATAATCAG......................................................................................................................................................................................................................ACAGCCGAGGAAAGTAACTTTGCTGCTAATGGACTAACTGCAGATGGATTGAAGGCCTTTGATGGCATATTGCAATCAAATATTGCTCTAAAGACTCTTAACCTATCTGGAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486587" ref_strand="+" ref_description="SGN-E486587 [cSTE-22-J19]">
      <seq>cgcgctttatctcctcttctggaactctcccttcgttcctctcactgtctaactcactcattgagtctctccatgggctcatcttctacattctctctgtgctctcatccaacggtgaattttgaatttaatggtagaaaagtcggatacggattgcagaaatcgttgagcagttcatccagttattgtttgattcatatttcgccgatttgtattagtagaagaagaaaatgcttgcaattgagacgtgtaattgttagagctgcttcgtcgtctagtactggtccgagacgttcgacgaatactcggagagtttacaaggaatcacaagctcaaacgccagcattgccggttgacagaattgtttcgtttgttgtgcccgctggtgcctttgtggttatctcttttgttttgtggaagctggtggagaaagttcttctacccaaaccagccaagactacatcagaagaaagcaagtctactcagggattgaagtggtccattgccgctgggacaaacttgttgcctggttttggtgcaaagattgaaagagaatccaagctgaggcttaatgactttgctaaagagcttagatctttcagcattgttgacatgtcaggtcgtaactttggagatgaagggctctttttcctagcagagagtttagcatataatcagacagccgaggaagtaaactttgctgctaatggactaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="62655" stop="59421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62355" g_stop="62242" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62241" i_stop="62164" i_length="78">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62163" g_stop="61866" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="409" r_length="295" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61865" i_stop="60708" i_length="1158">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="0.306" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60707" g_stop="60498" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="619" r_length="210" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60497" i_stop="60035" i_length="463">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.194" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60034" g_stop="59976" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="678" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59975" i_stop="59762" i_length="214">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59761" g_stop="59721" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="719" r_length="41" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E486587" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62355" e_stop="62242"/>
          <exon e_start="62163" e_stop="61866"/>
          <exon e_start="60707" e_stop="60498"/>
          <exon e_start="60034" e_stop="59976"/>
          <exon e_start="59761" e_stop="59721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGCTTTATCTCCTCTTCTGGAACTCTCTCTTCGTTCCTCTCACAGTCTCACTCACTCATTGAGTCTCTCCATGGGCTCATCTTCTACATTCTCTCTGTGTTCTCATCCGACGGTACTTTTCTCTACTTTGTTAACTTACTCGAACTTACAATTATGATTAAATTCTCACTTTTTTTTCGTTAATTTTTAGGTGAATTTTGAATTTAATGGTAGAAAAGTTGGATACGGATTGCAGAAATCGTTGAGTAGTTCATCCAGTTATTGTTTGATTCATATTTCGCCGATTAGTATAAGTAGTAGAAGAAGAAAATGCGTGCAATTGAGACGTGTAACTGTTAGAGCTGCTTCGTCGTCTAGTACTGGTTCGAGACGTTCGATGAGTACTCGGAGAGTTTACAAGGAATCACAAGCTCAAACGCCAGCATTACCTGTTGACAGAATTGTTTCGTTTGTTGTGCCCGCTGGTGCTTTTGTGGTTATCTCTTTTGGTATTGATATTTTGCCTATTTTCATCTCTGATAGCTTTTTCTTATGCTGAATTGAGCTTGCGCTTGAGTACATTTGATTATCATTACTAGTGATTGAGCTTGCGCTTGAGTACATTTGATTATCATTACTAGTGTTGGAGCAATAAATAAAATAAGGAGTTAAAAATTGCTACTTCTGCCTTTTAACTTGATAGCGAAAAAGAAGAATTTTGAATTTGTGGTCTAAAATACTAATACTTGATTACATGTGCACCTATACATCATCCGAGAGATTTCCTTCCGGTGGTTTAATTATAGCTTCCTTTACATGTGTTGAAAAACACTTTCTTTCATTATTCAATTACCAGTAACCTTTAGTTGACAAAAATTTCAACTTTCAACCTTCTTTTCTTTTCCATGATCATCCACTACTAATTAGGGTGACTGCTTATGTTCTACTTACTTTTCTAGTTATTTGACCATCCTGAATATGAAGGAGCATGCTTGAGGTTTAGTGAATAGGTAAAAATGTTGTGTAAGATATTCTTAATAATTATGTTTTATTAGTTGGGAGCGCGGTATTAGTAAAGTTTCCTTCTTAATTTAGTTCAGAATTTCTATATGCGGAGCTCCTTGAATGCGGTTAAACCTTTAATTACAAGAGCTCATTTCTCTCTTCTTTTTTTACAATGTCAAATTCTAATAAACAGTTAATCAAACACTGGTACTGTTGCATCTAATTTTTCTTAACATTCAAAGTTCTTACATTTCCATATCCAAAGATGTTGCTCCATACTTCTATTCTATATGATGCGGCTGAATTCCTCTTTCATTGCAAATTACCTCTATGAATAACTCTGAGCTCTTTCTGCCCAAAAAATTGAGGAGCTGCTTAACTTGCATCTGCAGATAGAATAAGTTTCTTAGTTTTACCACAGTGTTGCGCTGGTTCAGTCATTGACTATGGGCCCTGGCCATTTCTATTGCTGCACCCTTCCCAATGAACTCGTTATAAGTTATATCCTCTTCCACCTGGCATCCTTTCTCGCGGAGGTTGAATCTTGTGAAAATGTGGCTGCTAGACTGAAGATCTTCCTCTTATGAATTGTGACTGATATAGAGATCTTAAGTAGAAGGAAGATTCTCTATATCGTACTAATCTATGTGTTCAGTTGACAGTTTTGTGGAAGCTGGTGGAGAAAATTCTTCTACCCAAACCAGCCAATACTACATCAGAAGAAAGCAAGTCTACTCAGGGATTGAAGTGGTCCATTGCCGCTGGGACAAACTTGTTGCCTGGTTTTGGTGCAAAGATTGAAAGAGAATCCAAGCTGAGGCTTAATGACTTTGCTAAAGAGCTTAGATCTTTCAGCATTGTTGACATGTCAGGTAAAATTGCAGTCAGTTCTGGCTCAGCTGCTTCAAATATTAAAGTTGGTGGTCGTCAATGCTAAATGCTTTCATAATGAATATCTTCCTTTTTTATACCTTTGATCAAAAACTTTCTATCATGTGTAATTTTCAGAAATGTGATCACGATGTTAAAGGATTTGCCTTGACTTATTAAATTCTCAAGTCCCTGTTCCACCTCTTTAGAAAGTTCAACATATAAAGACCAAAGCTTTACCTTGATTTATGATTGAAAAACATGTTCTGCATACTGATAGTGTCTGAAGGAAATCTTCCAAACTTGTTTCATTTATAAGCTTCCCCCACCAAGTGCGCGTCACACCAAAACCAAAGTTTTTCTGCATCTTCCTTGTATTGTGATTCTACATGCTTTGCATACTGATTAAGGATTAATTTTGCAAGTCGCGAGAGGTATTGGGTTGAACGTTTTAGGCTTTGGCAGGTCGTAACTTTGGAGACGAGGGGCTCTTTTTCCTAGCAGAGAGTTTAGCATATAATCAGGTAATGTCTTTTGTCCCCCCTCTCTGTTATCAGTGTAGAGTATGCCATTATTTATTACGGTCCATCCTGTTGACTCAAGAGGATGAAACCATAATGCTGTAATGCAGACAAGTAAAAATACAATCTTTAGCTTCTTTTTTTCTGGAAGTATGTTTTTGCGCAAGTTTGGTTCCTTTACCAATGTACACTGCATTTCCTTTCATGTGATTTCCAGACAGCTGAGGAAGTAAACTTTGCTGCTAATGGAATAACTGC</genome_strand>
        <mrna_strand>CGCGCTTTATCTCCTCTTCTGGAACTCTCCCTTCGTTCCTCTCACTGTCTAACTCACTCATTGAGTCTCTCCATGGGCTCATCTTCTACATTCTCTCTGTGCTCTCATCCAACG..............................................................................GTGAATTTTGAATTTAATGGTAGAAAAGTCGGATACGGATTGCAGAAATCGTTGAGCAGTTCATCCAGTTATTGTTTGATTCATATTTCGCCGATTTGTAT---TAGTAGAAGAAGAAAATGCTTGCAATTGAGACGTGTAATTGTTAGAGCTGCTTCGTCGTCTAGTACTGGTCCGAGACGTTCGACGAATACTCGGAGAGTTTACAAGGAATCACAAGCTCAAACGCCAGCATTGCCGGTTGACAGAATTGTTTCGTTTGTTGTGCCCGCTGGTGCCTTTGTGGTTATCTCTTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTGGAAGCTGGTGGAGAAAGTTCTTCTACCCAAACCAGCCAAGACTACATCAGAAGAAAGCAAGTCTACTCAGGGATTGAAGTGGTCCATTGCCGCTGGGACAAACTTGTTGCCTGGTTTTGGTGCAAAGATTGAAAGAGAATCCAAGCTGAGGCTTAATGACTTTGCTAAAGAGCTTAGATCTTTCAGCATTGTTGACATGTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTAACTTTGGAGATGAAGGGCTCTTTTTCCTAGCAGAGAGTTTAGCATATAATCAG......................................................................................................................................................................................................................ACAGCCGAGGAAGTAAACTTTGCTGCTAATGGACTAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364827" ref_strand="+" ref_description="SGN-E364827 [cLPT-4-I6]">
      <seq>tggaactctctcttcgttcctctcactgtctcactcactcattgagtctctccatgggctcatcttctacattctctctgtgttctcatccaacggtgaattttgaatttaatggtagaaaagttggatatggattgcagaaatcgttgagtagttcatccagttattgtttgattcatatttcgccgattagtataagtagtagaagaagaaaatgcatgcaattgagacgtgtaattgttagagctacttcgtcgtctagtactggttcgagacgttcgatgaatactcggagagtttacaaggaatcacaagctcaaacgtcagcattacctgttgacagaattgtttcttttgttgtgcccgctggtgcttttgtggttatctcttttgttttgtggaagctggtggagaaaattcttctacccaaaccagccaatactacatcagaagaaagcaagtctactcanggattgaagtggtccattgccgctgggacaaacttgttgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="62636" stop="60289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62336" g_stop="62242" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62241" i_stop="62164" i_length="78">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62163" g_stop="61866" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="393" r_length="298" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61865" i_stop="60708" i_length="1158">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="0.306" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60707" g_stop="60589" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="512" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E364827" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62336" e_stop="62242"/>
          <exon e_start="62163" e_stop="61866"/>
          <exon e_start="60707" e_stop="60589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACTCTCTCTTCGTTCCTCTCACAGTCTCACTCACTCATTGAGTCTCTCCATGGGCTCATCTTCTACATTCTCTCTGTGTTCTCATCCGACGGTACTTTTCTCTACTTTGTTAACTTACTCGAACTTACAATTATGATTAAATTCTCACTTTTTTTTCGTTAATTTTTAGGTGAATTTTGAATTTAATGGTAGAAAAGTTGGATACGGATTGCAGAAATCGTTGAGTAGTTCATCCAGTTATTGTTTGATTCATATTTCGCCGATTAGTATAAGTAGTAGAAGAAGAAAATGCGTGCAATTGAGACGTGTAACTGTTAGAGCTGCTTCGTCGTCTAGTACTGGTTCGAGACGTTCGATGAGTACTCGGAGAGTTTACAAGGAATCACAAGCTCAAACGCCAGCATTACCTGTTGACAGAATTGTTTCGTTTGTTGTGCCCGCTGGTGCTTTTGTGGTTATCTCTTTTGGTATTGATATTTTGCCTATTTTCATCTCTGATAGCTTTTTCTTATGCTGAATTGAGCTTGCGCTTGAGTACATTTGATTATCATTACTAGTGATTGAGCTTGCGCTTGAGTACATTTGATTATCATTACTAGTGTTGGAGCAATAAATAAAATAAGGAGTTAAAAATTGCTACTTCTGCCTTTTAACTTGATAGCGAAAAAGAAGAATTTTGAATTTGTGGTCTAAAATACTAATACTTGATTACATGTGCACCTATACATCATCCGAGAGATTTCCTTCCGGTGGTTTAATTATAGCTTCCTTTACATGTGTTGAAAAACACTTTCTTTCATTATTCAATTACCAGTAACCTTTAGTTGACAAAAATTTCAACTTTCAACCTTCTTTTCTTTTCCATGATCATCCACTACTAATTAGGGTGACTGCTTATGTTCTACTTACTTTTCTAGTTATTTGACCATCCTGAATATGAAGGAGCATGCTTGAGGTTTAGTGAATAGGTAAAAATGTTGTGTAAGATATTCTTAATAATTATGTTTTATTAGTTGGGAGCGCGGTATTAGTAAAGTTTCCTTCTTAATTTAGTTCAGAATTTCTATATGCGGAGCTCCTTGAATGCGGTTAAACCTTTAATTACAAGAGCTCATTTCTCTCTTCTTTTTTTACAATGTCAAATTCTAATAAACAGTTAATCAAACACTGGTACTGTTGCATCTAATTTTTCTTAACATTCAAAGTTCTTACATTTCCATATCCAAAGATGTTGCTCCATACTTCTATTCTATATGATGCGGCTGAATTCCTCTTTCATTGCAAATTACCTCTATGAATAACTCTGAGCTCTTTCTGCCCAAAAAATTGAGGAGCTGCTTAACTTGCATCTGCAGATAGAATAAGTTTCTTAGTTTTACCACAGTGTTGCGCTGGTTCAGTCATTGACTATGGGCCCTGGCCATTTCTATTGCTGCACCCTTCCCAATGAACTCGTTATAAGTTATATCCTCTTCCACCTGGCATCCTTTCTCGCGGAGGTTGAATCTTGTGAAAATGTGGCTGCTAGACTGAAGATCTTCCTCTTATGAATTGTGACTGATATAGAGATCTTAAGTAGAAGGAAGATTCTCTATATCGTACTAATCTATGTGTTCAGTTGACAGTTTTGTGGAAGCTGGTGGAGAAAATTCTTCTACCCAAACCAGCCAATACTACATCAGAAGAAAGCAAGTCTACTCAGGGATTGAAGTGGTCCATTGCCGCTGGGACAAACTTGTTGCCT</genome_strand>
        <mrna_strand>TGGAACTCTCTCTTCGTTCCTCTCACTGTCTCACTCACTCATTGAGTCTCTCCATGGGCTCATCTTCTACATTCTCTCTGTGTTCTCATCCAACG..............................................................................GTGAATTTTGAATTTAATGGTAGAAAAGTTGGATATGGATTGCAGAAATCGTTGAGTAGTTCATCCAGTTATTGTTTGATTCATATTTCGCCGATTAGTATAAGTAGTAGAAGAAGAAAATGCATGCAATTGAGACGTGTAATTGTTAGAGCTACTTCGTCGTCTAGTACTGGTTCGAGACGTTCGATGAATACTCGGAGAGTTTACAAGGAATCACAAGCTCAAACGTCAGCATTACCTGTTGACAGAATTGTTTCTTTTGTTGTGCCCGCTGGTGCTTTTGTGGTTATCTCTTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTGGAAGCTGGTGGAGAAAATTCTTCTACCCAAACCAGCCAATACTACATCAGAAGAAAGCAAGTCTACTCANGGATTGAAGTGGTCCATTGCCGCTGGGACAAACTTGTTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315476" ref_strand="+" ref_description="SGN-E315476 [cTOA-22-P19]">
      <seq>tcttctggaactctctcttcgttcctctcacagtctcactcactcattgagtctctccatgggctcatcttctacattctctctgtgttctcatccgacggtgaattttgaatttaatggtagaaaagttggatacggattgcagaaatcgttgagtagttcatccagttattgtttgattcatatttcgccgattagtataagtagtagaagaagaaaatgcgtgcaattgagacgtgtaactgttagagctgcttcgtcgtctagtactggttcgagacgttcgatgagtactcggagagtttacaaggaatcacaagctcaaacgccagcattacctgttgacagaattgtttcgtttgttgtgcccgctggtgcttttgtggttatctcttttgttgacagttttgtggaagctggtggagaaaattcttctacccaaaccagccaatactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="62641" stop="60355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62341" g_stop="62242" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62241" i_stop="62164" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62163" g_stop="61866" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="398" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61865" i_stop="60715" i_length="1151">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60714" g_stop="60655" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="458" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-E315476" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62341" e_stop="62242"/>
          <exon e_start="62163" e_stop="61866"/>
          <exon e_start="60714" e_stop="60655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTGGAACTCTCTCTTCGTTCCTCTCACAGTCTCACTCACTCATTGAGTCTCTCCATGGGCTCATCTTCTACATTCTCTCTGTGTTCTCATCCGACGGTACTTTTCTCTACTTTGTTAACTTACTCGAACTTACAATTATGATTAAATTCTCACTTTTTTTTCGTTAATTTTTAGGTGAATTTTGAATTTAATGGTAGAAAAGTTGGATACGGATTGCAGAAATCGTTGAGTAGTTCATCCAGTTATTGTTTGATTCATATTTCGCCGATTAGTATAAGTAGTAGAAGAAGAAAATGCGTGCAATTGAGACGTGTAACTGTTAGAGCTGCTTCGTCGTCTAGTACTGGTTCGAGACGTTCGATGAGTACTCGGAGAGTTTACAAGGAATCACAAGCTCAAACGCCAGCATTACCTGTTGACAGAATTGTTTCGTTTGTTGTGCCCGCTGGTGCTTTTGTGGTTATCTCTTTTGGTATTGATATTTTGCCTATTTTCATCTCTGATAGCTTTTTCTTATGCTGAATTGAGCTTGCGCTTGAGTACATTTGATTATCATTACTAGTGATTGAGCTTGCGCTTGAGTACATTTGATTATCATTACTAGTGTTGGAGCAATAAATAAAATAAGGAGTTAAAAATTGCTACTTCTGCCTTTTAACTTGATAGCGAAAAAGAAGAATTTTGAATTTGTGGTCTAAAATACTAATACTTGATTACATGTGCACCTATACATCATCCGAGAGATTTCCTTCCGGTGGTTTAATTATAGCTTCCTTTACATGTGTTGAAAAACACTTTCTTTCATTATTCAATTACCAGTAACCTTTAGTTGACAAAAATTTCAACTTTCAACCTTCTTTTCTTTTCCATGATCATCCACTACTAATTAGGGTGACTGCTTATGTTCTACTTACTTTTCTAGTTATTTGACCATCCTGAATATGAAGGAGCATGCTTGAGGTTTAGTGAATAGGTAAAAATGTTGTGTAAGATATTCTTAATAATTATGTTTTATTAGTTGGGAGCGCGGTATTAGTAAAGTTTCCTTCTTAATTTAGTTCAGAATTTCTATATGCGGAGCTCCTTGAATGCGGTTAAACCTTTAATTACAAGAGCTCATTTCTCTCTTCTTTTTTTACAATGTCAAATTCTAATAAACAGTTAATCAAACACTGGTACTGTTGCATCTAATTTTTCTTAACATTCAAAGTTCTTACATTTCCATATCCAAAGATGTTGCTCCATACTTCTATTCTATATGATGCGGCTGAATTCCTCTTTCATTGCAAATTACCTCTATGAATAACTCTGAGCTCTTTCTGCCCAAAAAATTGAGGAGCTGCTTAACTTGCATCTGCAGATAGAATAAGTTTCTTAGTTTTACCACAGTGTTGCGCTGGTTCAGTCATTGACTATGGGCCCTGGCCATTTCTATTGCTGCACCCTTCCCAATGAACTCGTTATAAGTTATATCCTCTTCCACCTGGCATCCTTTCTCGCGGAGGTTGAATCTTGTGAAAATGTGGCTGCTAGACTGAAGATCTTCCTCTTATGAATTGTGACTGATATAGAGATCTTAAGTAGAAGGAAGATTCTCTATATCGTACTAATCTATGTGTTCAGTTGACAGTTTTGTGGAAGCTGGTGGAGAAAATTCTTCTACCCAAACCAGCCAATACTACA</genome_strand>
        <mrna_strand>TCTTCTGGAACTCTCTCTTCGTTCCTCTCACAGTCTCACTCACTCATTGAGTCTCTCCATGGGCTCATCTTCTACATTCTCTCTGTGTTCTCATCCGACG..............................................................................GTGAATTTTGAATTTAATGGTAGAAAAGTTGGATACGGATTGCAGAAATCGTTGAGTAGTTCATCCAGTTATTGTTTGATTCATATTTCGCCGATTAGTATAAGTAGTAGAAGAAGAAAATGCGTGCAATTGAGACGTGTAACTGTTAGAGCTGCTTCGTCGTCTAGTACTGGTTCGAGACGTTCGATGAGTACTCGGAGAGTTTACAAGGAATCACAAGCTCAAACGCCAGCATTACCTGTTGACAGAATTGTTTCGTTTGTTGTGCCCGCTGGTGCTTTTGTGGTTATCTCTTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACAGTTTTGTGGAAGCTGGTGGAGAAAATTCTTCTACCCAAACCAGCCAATACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544096" ref_strand="+" ref_description="SGN-E544096 [TUS-66-E2](-)">
      <seq>ccctaaaaaaaataaaattatattctcaaccaataaaacaagttgagaataaaacaagttgaaggcaatatttgaattttgaaaaacgagaaagtaatggctttcaaagtttcaagtgttgcattcaacttcattgcttgagtggtatttttagcgtcggttgtaatagctcatgagggccatgaccaccatgcccccgcccccgccccctatccatcgcaatcctccggtgccataatcacctcattgccttcaatggtggtgggatttttcagttgggttatttctttccttgttattaaggagagagtttaaagtttaaatgtttatggtcatctttgtctttggagtttacgattcattatgatacgttggagaggttcttgacctttttttttgaatcgcttttcaatgggtttaattgttgtaccatggcaagttgtttgtactcttttctcaaaattaggaaatcgtatcaaatatgttcaagttgagtcattaaatcacaagcaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="71822" stop="72925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72121" g_stop="72620" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="512" polyA_stop="532"/>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E544096" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72121" e_stop="72620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTAAAAAAAATAAAATTATATTCTCAACCAATAAAACAAGTTGAGAATAAAACAAGTTGAAGGCAATATTTGAATTTTGAAAAACGAGAAAGTAATGGCTTTCAAAGTTTCAAGTGTTGCATTCAACTTCATTGCTTGTGTTGTATTTTTAGCGTCTGTTGTTATAGCTCATGAGGGCCATGACCACCATGCCCCCGCCCCCGCCCCCTCTCCATCGCAATCCTCCGGTGCCATAATCACCTCATTGCCTTCAATGGTGGTTGGATTTTTCAGTTTGGTTATTTCTTTCCTTGTTATTAAGGAGAGAGTTTAAAGTTTAAATGTTTATGGTCATCTTTGT-TTTTGTGTTTACGATTCATTATGATACGTTTGTGAGTTTCTTGACTTTTTTTTTTGTATTGCTTTTTGATGTGTTTAATTGTTGTATCATGGCAAGTTGTTTGTACTCTTTTCTCAAAATTATGAAATTGTATCAAATATGTTTAAGTTGAGTCATTA</genome_strand>
        <mrna_strand>CCCTAAAAAAAATAAAATTATATTCTCAACCAATAAAACAAGTTGAGAATAAAACAAGTTGAAGGCAATATTTGAATTTTGAAAAACGAGAAAGTAATGGCTTTCAAAGTTTCAAGTGTTGCATTCAACTTCATTGCTTGAGTGGTATTTTTAGCGTCGGTTGTAATAGCTCATGAGGGCCATGACCACCATGCCCCCGCCCCCGCCCCCTATCCATCGCAATCCTCCGGTGCCATAATCACCTCATTGCCTTCAATGGTGGTGGGATTTTTCAGTTGGGTTATTTCTTTCCTTGTTATTAAGGAGAGAGTTTAAAGTTTAAATGTTTATGGTCATCTTTGTCTTTGGAGTTTACGATTCATTATGATACGTTGGAGAGGTTCTTGACCTTTTTTTTTGAATCGCTTTTCAATGGGTTTAATTGTTGTACCATGGCAAGTTGTTTGTACTCTTTTCTCAAAATTAGGAAATCGTATCAAATATGTTCAAGTTGAGTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303658" ref_strand="+" ref_description="SGN-E303658 [cLEY-6-K13](-)">
      <seq>ctaaaaaaaataaaattatattctcaaccaataaaacaagttgagaataaaacaagttgaaggcaatatttgaattttgaaaaacgagaaagtaatggctttcaaagtttcaagtgttgcattcaacttcattgcttgtgttgtatttttagcgtctgttgttatagctcatgagggccatgaccaccatgcccccgcccccgccccctttccattgcaatcctccggtgccataatcacctcattgccttcaatggtggttggatttttcagtttggttatttctttccttgttattaaggagagagtttaaagtttaaatgtttatggtcatctttgtttttgtgtttacgattcattatgatacgtttgtgagtttcttgacttttttttttgtattgctttttgatgtgtttaattgttgtatcatggcaagttgtttgtactcttttctcaaaattatgaaattgtatcaaatatgtttaagttgagtcctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="71823" stop="72923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72123" g_stop="72620" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="499" polyA_stop="527"/>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E303658" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72123" e_stop="72620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAAAAATAAAATTATATTCTCAACCAATAAAACAAGTTGAGAATAAAACAAGTTGAAGGCAATATTTGAATTTTGAAAAACGAGAAAGTAATGGCTTTCAAAGTTTCAAGTGTTGCATTCAACTTCATTGCTTGTGTTGTATTTTTAGCGTCTGTTGTTATAGCTCATGAGGGCCATGACCACCATGCCCCCGCCCCCGCCCCCTCTCCATCGCAATCCTCCGGTGCCATAATCACCTCATTGCCTTCAATGGTGGTTGGATTTTTCAGTTTGGTTATTTCTTTCCTTGTTATTAAGGAGAGAGTTTAAAGTTTAAATGTTTATGGTCATCTTTGTTTTTGTGTTTACGATTCATTATGATACGTTTGTGAGTTTCTTGACTTTTTTTTTTGTATTGCTTTTTGATGTGTTTAATTGTTGTATCATGGCAAGTTGTTTGTACTCTTTTCTCAAAATTATGAAATTGTATCAAATATGTTTAAGTTGAGTCATTA</genome_strand>
        <mrna_strand>CTAAAAAAAATAAAATTATATTCTCAACCAATAAAACAAGTTGAGAATAAAACAAGTTGAAGGCAATATTTGAATTTTGAAAAACGAGAAAGTAATGGCTTTCAAAGTTTCAAGTGTTGCATTCAACTTCATTGCTTGTGTTGTATTTTTAGCGTCTGTTGTTATAGCTCATGAGGGCCATGACCACCATGCCCCCGCCCCCGCCCCCTTTCCATTGCAATCCTCCGGTGCCATAATCACCTCATTGCCTTCAATGGTGGTTGGATTTTTCAGTTTGGTTATTTCTTTCCTTGTTATTAAGGAGAGAGTTTAAAGTTTAAATGTTTATGGTCATCTTTGTTTTTGTGTTTACGATTCATTATGATACGTTTGTGAGTTTCTTGACTTTTTTTTTTGTATTGCTTTTTGATGTGTTTAATTGTTGTATCATGGCAAGTTGTTTGTACTCTTTTCTCAAAATTATGAAATTGTATCAAATATGTTTAAGTTGAGTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303614" ref_strand="+" ref_description="SGN-E303614 [cLEY-6-K13]">
      <seq>ctaaaaaaaataaaattatattctcaaccaataaaacaagttgagaataaaacaagttgaaggcaatatttgaattttgaaaaacgagaaagtaatggctttcaaagtttcaagtgttgcattcaacttcattgcttgtgttgtatttttagcgtctgttgttatagctcatgagggccatgaccaccatgcccccgcccccgccccctctccatcgcaatcctccggtgccataatcacctcattgccttcaatggtggttggatttttcagtttggttatttctttccttgttattaaggagagagtttaaagtttaaatgtttatggtcatctttgtttttgtgtttacgattcattatgatacgtttgtgagtttcttgacttttttttttgtattgctttttgatgtgtttaattgttgtatcatggcaagttgtttgtactcttttctcaaaattatgaaattgtatcaaatatgtttaagttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="71823" stop="72915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72123" g_stop="72615" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-E303614" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72123" e_stop="72615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAAAAATAAAATTATATTCTCAACCAATAAAACAAGTTGAGAATAAAACAAGTTGAAGGCAATATTTGAATTTTGAAAAACGAGAAAGTAATGGCTTTCAAAGTTTCAAGTGTTGCATTCAACTTCATTGCTTGTGTTGTATTTTTAGCGTCTGTTGTTATAGCTCATGAGGGCCATGACCACCATGCCCCCGCCCCCGCCCCCTCTCCATCGCAATCCTCCGGTGCCATAATCACCTCATTGCCTTCAATGGTGGTTGGATTTTTCAGTTTGGTTATTTCTTTCCTTGTTATTAAGGAGAGAGTTTAAAGTTTAAATGTTTATGGTCATCTTTGTTTTTGTGTTTACGATTCATTATGATACGTTTGTGAGTTTCTTGACTTTTTTTTTTGTATTGCTTTTTGATGTGTTTAATTGTTGTATCATGGCAAGTTGTTTGTACTCTTTTCTCAAAATTATGAAATTGTATCAAATATGTTTAAGTTGAGT</genome_strand>
        <mrna_strand>CTAAAAAAAATAAAATTATATTCTCAACCAATAAAACAAGTTGAGAATAAAACAAGTTGAAGGCAATATTTGAATTTTGAAAAACGAGAAAGTAATGGCTTTCAAAGTTTCAAGTGTTGCATTCAACTTCATTGCTTGTGTTGTATTTTTAGCGTCTGTTGTTATAGCTCATGAGGGCCATGACCACCATGCCCCCGCCCCCGCCCCCTCTCCATCGCAATCCTCCGGTGCCATAATCACCTCATTGCCTTCAATGGTGGTTGGATTTTTCAGTTTGGTTATTTCTTTCCTTGTTATTAAGGAGAGAGTTTAAAGTTTAAATGTTTATGGTCATCTTTGTTTTTGTGTTTACGATTCATTATGATACGTTTGTGAGTTTCTTGACTTTTTTTTTTGTATTGCTTTTTGATGTGTTTAATTGTTGTATCATGGCAAGTTGTTTGTACTCTTTTCTCAAAATTATGAAATTGTATCAAATATGTTTAAGTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>93</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="8357" PGL_stop="8805"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8357" e_stop="8805"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="8357" e_stop="8805" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8357" stop="8678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8357" stop="8662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8358" stop="8805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATACCGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAACATTGTATTTCACTGCAATTGTATAATTTGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATTTTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTCCTGGGAGAGAGACGCTGGCAAATTTTTAGATAATGTTTGCTATGGAGCACAAATAAAACAAACCCTAGCTATTCCATTTAATTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  P  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  N  I  V  F  H  C  N  C  I  I  C  N  C  I  I  R  W  P  F  S  L  Q  F  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  K  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  P  G  R  E  T  L  A  N  F  *  I  M  F  A  M  E  H  K  *  N  K  P  *  L  F  H  L  I  *  V  I   </first_frame>
            <second_frame>  K  M  Y  V  Y  R  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  T  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  V  G  L  F  L  C  N  F  *  S  K  M  F  V  N  Y  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  K  L  Y  T  S  V  Y  K  A  R  E  A  S  E  N  G  E  W  R  A  R  F  L  G  E  R  R  W  Q  I  F  R  *  C  L  L  W  S  T  N  K  T  N  P  S  Y  S  I  *  F  R  L  L  </second_frame>
            <third_frame>   K  C  M  Y  T  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  H  C  I  S  L  Q  L  Y  N  L  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  I  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  S  W  E  R  D  A  G  K  F  L  D  N  V  C  Y  G  A  Q  I  K  Q  T  L  A  I  P  F  N  L  G  Y  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8581" stop="8805"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HEDIHFCMCIYNFLSLYTKQKQNYTLLCIKRERRARMESGERDSWERDAGKFLDNVCYGAQIKQTLAIPFNLGY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8544" stop="8744"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMFVNYIIKCITRRYTFLHVYIQFSLALYKTETKLYTSVYKAREASENGEWRARFLGERRWQIFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="15450" PGL_stop="17258"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15450" e_stop="16158"/>
            <exon e_start="16815" e_stop="17013"/>
            <exon e_start="17117" e_stop="17258"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="0.995"/>
          <exon-intron don_prob="0.564" acc_prob="0.451" e_score="0.955"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="15450" e_stop="16158" e_length="709"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16159" i_stop="16814" i_length="656"/>
          </intron>
          <exon e_serial="2" e_score="0.955">
            <gDNA_exon_boundary e_start="16815" e_stop="17013" e_length="199"/>
          </exon>
          <intron i_serial="2" don_prob="0.564" acc_prob="0.451">
            <gDNA_intron_boundary i_start="17014" i_stop="17116" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.944">
            <gDNA_exon_boundary e_start="17117" e_stop="17258" e_length="142"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15450" stop="15981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15470" stop="16158"/>
              <exon start="16815" stop="16872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15497" stop="16158"/>
              <exon start="16815" stop="16871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15497" stop="16158"/>
              <exon start="16815" stop="16854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15497" stop="16158"/>
              <exon start="16815" stop="16850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16129" stop="16158"/>
              <exon start="16815" stop="17013"/>
              <exon start="17117" stop="17258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473798" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCTTTTACTCTTCTTCATCTTCATTCTTCCCCAAAAAACCTCAGCTTAATCCCCAGATGCTTATACTGATAACTGATAAATCCAAGTAGATAACGAAGAAGAAGAAGAAGATATACCTGTTAATCCCAGAAGATTTGAGCTTTTTCCGAGTTCCATTTCAAGTTTTGCAGTTTCTGTTATAGAAATGCTTAGCTTAGGAAGTTATCCAAGGCAACCCCATTGTTGTGCCAGCACAATTTCACAATGTCTTCCTCTTTTTTGCAAGATTCCTCAACCCCAATTGTTTTTTACTTCAAATACAGTGACCCATTTAAGGATTCGTTCTCTTATTGAGCAAAAACGAACTGGGGTGTGCGTTTTTGCACGCAAGGATGAAGAAAAAAGGGGGAATAGTGTGGTAGAAATGGAAGAAATTGAGGATTTTGATGATGACTATGACGACGACGACGATGATTTTCTAGGGGATGAGGAAGAGGTTGACGGAGACGACGACGACGATGATGAGGTGATTATTCCATTAAGAAATATGAAGAAATGGTTAGAAAACAAGCCGCGTGGGTTTGGAGTAGATAAAGAGTATGATACTTCAGTTGAAGATAAGCTGATGGAAGAAATTGAACAGAGTAGAAAAGCTCAGCTTGCTAATATCAATAAGCTCAAAAACAATCCAGTTAAAGCAAATACCAAACAAGTTCAGCAGGATAAAG : TTGTTCAGGATGGACTCTGTGTGCGCTTGGTCAATCTTCCTAAGAAAATGAACGTTGATAAGGATCTACGAGTAGCTTTCAAAGGAGTTTCAGGAATAGTCAACATAGTTCCAGTCGTGACTGGGAACAAGAAGACCAGGAATCCTGTTTGTAAAGGCATGGCCTATATTAACTTTAAGTCCAAGGATGAAGCACAAAG : ATTTGTGCAAATGTTTTCTGGACGAAGTATAAGTTTTGGTAAAGTTCAGAAGCAAATAAAGTGTGAGATGATAAATCCGGGATCACCTAAGTCCACAACTACACAGTCAGTTCATAAAATTAAGCATGTCCCTGAAAAAGAT</gDNA_template>
            <first_frame> N  L  L  L  F  F  I  F  I  L  P  Q  K  T  S  A  *  S  P  D  A  Y  T  D  N  *  *  I  Q  V  D  N  E  E  E  E  E  D  I  P  V  N  P  R  R  F  E  L  F  P  S  S  I  S  S  F  A  V  S  V  I  E  M  L  S  L  G  S  Y  P  R  Q  P  H  C  C  A  S  T  I  S  Q  C  L  P  L  F  C  K  I  P  Q  P  Q  L  F  F  T  S  N  T  V  T  H  L  R  I  R  S  L  I  E  Q  K  R  T  G  V  C  V  F  A  R  K  D  E  E  K  R  G  N  S  V  V  E  M  E  E  I  E  D  F  D  D  D  Y  D  D  D  D  D  D  F  L  G  D  E  E  E  V  D  G  D  D  D  D  D  D  E  V  I  I  P  L  R  N  M  K  K  W  L  E  N  K  P  R  G  F  G  V  D  K  E  Y  D  T  S  V  E  D  K  L  M  E  E  I  E  Q  S  R  K  A  Q  L  A  N  I  N  K  L  K  N  N  P  V  K  A  N  T  K  Q  V  Q  Q  D  K   : V  V  Q  D  G  L  C  V  R  L  V  N  L  P  K  K  M  N  V  D  K  D  L  R  V  A  F  K  G  V  S  G  I  V  N  I  V  P  V  V  T  G  N  K  K  T  R  N  P  V  C  K  G  M  A  Y  I  N  F  K  S  K  D  E  A  Q  R :   F  V  Q  M  F  S  G  R  S  I  S  F  G  K  V  Q  K  Q  I  K  C  E  M  I  N  P  G  S  P  K  S  T  T  T  Q  S  V  H  K  I  K  H  V  P  E  K  D </first_frame>
            <second_frame>  I  F  Y  S  S  S  S  S  F  F  P  K  K  P  Q  L  N  P  Q  M  L  I  L  I  T  D  K  S  K  *  I  T  K  K  K  K  K  I  Y  L  L  I  P  E  D  L  S  F  F  R  V  P  F  Q  V  L  Q  F  L  L  *  K  C  L  A  *  E  V  I  Q  G  N  P  I  V  V  P  A  Q  F  H  N  V  F  L  F  F  A  R  F  L  N  P  N  C  F  L  L  Q  I  Q  *  P  I  *  G  F  V  L  L  L  S  K  N  E  L  G  C  A  F  L  H  A  R  M  K  K  K  G  G  I  V  W  *  K  W  K  K  L  R  I  L  M  M  T  M  T  T  T  T  M  I  F  *  G  M  R  K  R  L  T  E  T  T  T  T  M  M  R  *  L  F  H  *  E  I  *  R  N  G  *  K  T  S  R  V  G  L  E  *  I  K  S  M  I  L  Q  L  K  I  S  *  W  K  K  L  N  R  V  E  K  L  S  L  L  I  S  I  S  S  K  T  I  Q  L  K  Q  I  P  N  K  F  S  R  I  K  :  L  F  R  M  D  S  V  C  A  W  S  I  F  L  R  K  *  T  L  I  R  I  Y  E  *  L  S  K  E  F  Q  E  *  S  T  *  F  Q  S  *  L  G  T  R  R  P  G  I  L  F  V  K  A  W  P  I  L  T  L  S  P  R  M  K  H  K   : D  L  C  K  C  F  L  D  E  V  *  V  L  V  K  F  R  S  K  *  S  V  R  *  *  I  R  D  H  L  S  P  Q  L  H  S  Q  F  I  K  L  S  M  S  L  K  K   </second_frame>
            <third_frame>   S  F  T  L  L  H  L  H  S  S  P  K  N  L  S  L  I  P  R  C  L  Y  *  *  L  I  N  P  S  R  *  R  R  R  R  R  R  Y  T  C  *  S  Q  K  I  *  A  F  S  E  F  H  F  K  F  C  S  F  C  Y  R  N  A  *  L  R  K  L  S  K  A  T  P  L  L  C  Q  H  N  F  T  M  S  S  S  F  L  Q  D  S  S  T  P  I  V  F  Y  F  K  Y  S  D  P  F  K  D  S  F  S  Y  *  A  K  T  N  W  G  V  R  F  C  T  Q  G  *  R  K  K  G  E  *  C  G  R  N  G  R  N  *  G  F  *  *  *  L  *  R  R  R  R  *  F  S  R  G  *  G  R  G  *  R  R  R  R  R  R  *  *  G  D  Y  S  I  K  K  Y  E  E  M  V  R  K  Q  A  A  W  V  W  S  R  *  R  V  *  Y  F  S  *  R  *  A  D  G  R  N  *  T  E  *  K  S  S  A  C  *  Y  Q  *  A  Q  K  Q  S  S  *  S  K  Y  Q  T  S  S  A  G  *  S :   C  S  G  W  T  L  C  A  L  G  Q  S  S  *  E  N  E  R  *  *  G  S  T  S  S  F  Q  R  S  F  R  N  S  Q  H  S  S  S  R  D  W  E  Q  E  D  Q  E  S  C  L  *  R  H  G  L  Y  *  L  *  V  Q  G  *  S  T  K  :  I  C  A  N  V  F  W  T  K  Y  K  F  W  *  S  S  E  A  N  K  V  *  D  D  K  S  G  I  T  *  V  H  N  Y  T  V  S  S  *  N  *  A  C  P  *  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15531" stop="16158"/>
                    <exon start="16815" stop="17013"/>
                    <exon start="17117" stop="17258"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>969</number_coding_nucleotides>
                  <number_encoded_amino_acids>323</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQVDNEEEEEDIPVNPRRFELFPSSISSFAVSVIEMLSLGSYPRQPHCCASTISQCLPLFCKIPQPQLFFTSNTVTHLRIRSLIEQKRTGVCVFARKDEEKRGNSVVEMEEIEDFDDDYDDDDDDFLGDEEEVDGDDDDDDEVIIPLRNMKKWLENKPRGFGVDKEYDTSVEDKLMEEIEQSRKAQLANINKLKNNPVKANTKQVQQDKVVQDGLCVRLVNLPKKMNVDKDLRVAFKGVSGIVNIVPVVTGNKKTRNPVCKGMAYINFKSKDEAQRFVQMFSGRSISFGKVQKQIKCEMINPGSPKSTTTQSVHKIKHVPEKD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15450" e_stop="16158"/>
            <exon e_start="16823" e_stop="17013"/>
            <exon e_start="17117" e_stop="17258"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.859" e_score="0.989"/>
          <exon-intron don_prob="0.564" acc_prob="0.451" e_score="0.953"/>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="15450" e_stop="16158" e_length="709"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.859">
            <gDNA_intron_boundary i_start="16159" i_stop="16822" i_length="664"/>
          </intron>
          <exon e_serial="2" e_score="0.953">
            <gDNA_exon_boundary e_start="16823" e_stop="17013" e_length="191"/>
          </exon>
          <intron i_serial="2" don_prob="0.564" acc_prob="0.451">
            <gDNA_intron_boundary i_start="17014" i_stop="17116" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.937">
            <gDNA_exon_boundary e_start="17117" e_stop="17258" e_length="142"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15450" stop="15981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15973" stop="16158"/>
              <exon start="16823" stop="17013"/>
              <exon start="17117" stop="17258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439255" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCTTTTACTCTTCTTCATCTTCATTCTTCCCCAAAAAACCTCAGCTTAATCCCCAGATGCTTATACTGATAACTGATAAATCCAAGTAGATAACGAAGAAGAAGAAGAAGATATACCTGTTAATCCCAGAAGATTTGAGCTTTTTCCGAGTTCCATTTCAAGTTTTGCAGTTTCTGTTATAGAAATGCTTAGCTTAGGAAGTTATCCAAGGCAACCCCATTGTTGTGCCAGCACAATTTCACAATGTCTTCCTCTTTTTTGCAAGATTCCTCAACCCCAATTGTTTTTTACTTCAAATACAGTGACCCATTTAAGGATTCGTTCTCTTATTGAGCAAAAACGAACTGGGGTGTGCGTTTTTGCACGCAAGGATGAAGAAAAAAGGGGGAATAGTGTGGTAGAAATGGAAGAAATTGAGGATTTTGATGATGACTATGACGACGACGACGATGATTTTCTAGGGGATGAGGAAGAGGTTGACGGAGACGACGACGACGATGATGAGGTGATTATTCCATTAAGAAATATGAAGAAATGGTTAGAAAACAAGCCGCGTGGGTTTGGAGTAGATAAAGAGTATGATACTTCAGTTGAAGATAAGCTGATGGAAGAAATTGAACAGAGTAGAAAAGCTCAGCTTGCTAATATCAATAAGCTCAAAAACAATCCAGTTAAAGCAAATACCAAACAAGTTCAGCAGGATAAAG : GATGGACTCTGTGTGCGCTTGGTCAATCTTCCTAAGAAAATGAACGTTGATAAGGATCTACGAGTAGCTTTCAAAGGAGTTTCAGGAATAGTCAACATAGTTCCAGTCGTGACTGGGAACAAGAAGACCAGGAATCCTGTTTGTAAAGGCATGGCCTATATTAACTTTAAGTCCAAGGATGAAGCACAAAG : ATTTGTGCAAATGTTTTCTGGACGAAGTATAAGTTTTGGTAAAGTTCAGAAGCAAATAAAGTGTGAGATGATAAATCCGGGATCACCTAAGTCCACAACTACACAGTCAGTTCATAAAATTAAGCATGTCCCTGAAAAAGAT</gDNA_template>
            <first_frame> N  L  L  L  F  F  I  F  I  L  P  Q  K  T  S  A  *  S  P  D  A  Y  T  D  N  *  *  I  Q  V  D  N  E  E  E  E  E  D  I  P  V  N  P  R  R  F  E  L  F  P  S  S  I  S  S  F  A  V  S  V  I  E  M  L  S  L  G  S  Y  P  R  Q  P  H  C  C  A  S  T  I  S  Q  C  L  P  L  F  C  K  I  P  Q  P  Q  L  F  F  T  S  N  T  V  T  H  L  R  I  R  S  L  I  E  Q  K  R  T  G  V  C  V  F  A  R  K  D  E  E  K  R  G  N  S  V  V  E  M  E  E  I  E  D  F  D  D  D  Y  D  D  D  D  D  D  F  L  G  D  E  E  E  V  D  G  D  D  D  D  D  D  E  V  I  I  P  L  R  N  M  K  K  W  L  E  N  K  P  R  G  F  G  V  D  K  E  Y  D  T  S  V  E  D  K  L  M  E  E  I  E  Q  S  R  K  A  Q  L  A  N  I  N  K  L  K  N  N  P  V  K  A  N  T  K  Q  V  Q  Q  D  K   : G  W  T  L  C  A  L  G  Q  S  S  *  E  N  E  R  *  *  G  S  T  S  S  F  Q  R  S  F  R  N  S  Q  H  S  S  S  R  D  W  E  Q  E  D  Q  E  S  C  L  *  R  H  G  L  Y  *  L  *  V  Q  G  *  S  T  K  :  I  C  A  N  V  F  W  T  K  Y  K  F  W  *  S  S  E  A  N  K  V  *  D  D  K  S  G  I  T  *  V  H  N  Y  T  V  S  S  *  N  *  A  C  P  *  K  R  </first_frame>
            <second_frame>  I  F  Y  S  S  S  S  S  F  F  P  K  K  P  Q  L  N  P  Q  M  L  I  L  I  T  D  K  S  K  *  I  T  K  K  K  K  K  I  Y  L  L  I  P  E  D  L  S  F  F  R  V  P  F  Q  V  L  Q  F  L  L  *  K  C  L  A  *  E  V  I  Q  G  N  P  I  V  V  P  A  Q  F  H  N  V  F  L  F  F  A  R  F  L  N  P  N  C  F  L  L  Q  I  Q  *  P  I  *  G  F  V  L  L  L  S  K  N  E  L  G  C  A  F  L  H  A  R  M  K  K  K  G  G  I  V  W  *  K  W  K  K  L  R  I  L  M  M  T  M  T  T  T  T  M  I  F  *  G  M  R  K  R  L  T  E  T  T  T  T  M  M  R  *  L  F  H  *  E  I  *  R  N  G  *  K  T  S  R  V  G  L  E  *  I  K  S  M  I  L  Q  L  K  I  S  *  W  K  K  L  N  R  V  E  K  L  S  L  L  I  S  I  S  S  K  T  I  Q  L  K  Q  I  P  N  K  F  S  R  I  K  :  D  G  L  C  V  R  L  V  N  L  P  K  K  M  N  V  D  K  D  L  R  V  A  F  K  G  V  S  G  I  V  N  I  V  P  V  V  T  G  N  K  K  T  R  N  P  V  C  K  G  M  A  Y  I  N  F  K  S  K  D  E  A  Q  R :   F  V  Q  M  F  S  G  R  S  I  S  F  G  K  V  Q  K  Q  I  K  C  E  M  I  N  P  G  S  P  K  S  T  T  T  Q  S  V  H  K  I  K  H  V  P  E  K  D </second_frame>
            <third_frame>   S  F  T  L  L  H  L  H  S  S  P  K  N  L  S  L  I  P  R  C  L  Y  *  *  L  I  N  P  S  R  *  R  R  R  R  R  R  Y  T  C  *  S  Q  K  I  *  A  F  S  E  F  H  F  K  F  C  S  F  C  Y  R  N  A  *  L  R  K  L  S  K  A  T  P  L  L  C  Q  H  N  F  T  M  S  S  S  F  L  Q  D  S  S  T  P  I  V  F  Y  F  K  Y  S  D  P  F  K  D  S  F  S  Y  *  A  K  T  N  W  G  V  R  F  C  T  Q  G  *  R  K  K  G  E  *  C  G  R  N  G  R  N  *  G  F  *  *  *  L  *  R  R  R  R  *  F  S  R  G  *  G  R  G  *  R  R  R  R  R  R  *  *  G  D  Y  S  I  K  K  Y  E  E  M  V  R  K  Q  A  A  W  V  W  S  R  *  R  V  *  Y  F  S  *  R  *  A  D  G  R  N  *  T  E  *  K  S  S  A  C  *  Y  Q  *  A  Q  K  Q  S  S  *  S  K  Y  Q  T  S  S  A  G  *  R :   M  D  S  V  C  A  W  S  I  F  L  R  K  *  T  L  I  R  I  Y  E  *  L  S  K  E  F  Q  E  *  S  T  *  F  Q  S  *  L  G  T  R  R  P  G  I  L  F  V  K  A  W  P  I  L  T  L  S  P  R  M  K  H  K   : D  L  C  K  C  F  L  D  E  V  *  V  L  V  K  F  R  S  K  *  S  V  R  *  *  I  R  D  H  L  S  P  Q  L  H  S  Q  F  I  K  L  S  M  S  L  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15531" stop="16158"/>
                    <exon start="16823" stop="16857"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQVDNEEEEEDIPVNPRRFELFPSSISSFAVSVIEMLSLGSYPRQPHCCASTISQCLPLFCKIPQPQLFFTSNTVTHLRIRSLIEQKRTGVCVFARKDEEKRGNSVVEMEEIEDFDDDYDDDDDDFLGDEEEVDGDDDDDDEVIIPLRNMKKWLENKPRGFGVDKEYDTSVEDKLMEEIEQSRKAQLANINKLKNNPVKANTKQVQQDKGWTLCALGQSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="20991" PGL_stop="20147"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20991" e_stop="20147"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20991" e_stop="20147" e_length="845"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20991" stop="20163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20987" stop="20279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20969" stop="20277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20940" stop="20309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20939" stop="20431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20914" stop="20233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20914" stop="20257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20914" stop="20264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20902" stop="20226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20837" stop="20263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20837" stop="20264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20837" stop="20264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20837" stop="20264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20837" stop="20265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20727" stop="20211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20727" stop="20280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20487" stop="20147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618714" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCAAGTGGGCTTTTTGTGTTTCTTCCCATAAATTCATTGACGCGAAAAATAAAAACAGCAAATCTACTCCGTCGTGAACCACCGCCGGAAAATCAAAATGCCACCCAAATCGGAAACCCAACCGGCATCATCCACCGCCAAAACCCAATTTTCCGATCCGTCTGATGACTACTCCATCGACCCAATTTTCCACATCCTCCGTATCCTCCCATTCTCCTTCCTCCGCCCTCCAAAGCTCCGTCTGAAAATCCCATCGGTGACTCTTCCCTCCGCCATGACAGTTTTCAGTCTTATCCTTCTTACCTACTTTATGGTCGTCTCTGGCATCGTTTATGACGTCATTGTTGAACCGCCGGGAATTGGATCAACCCAAGACCGGTTCACCGGAGCTGTTAAACCGGTGGTGTTTCTTCCGGGTCGAGTTAATGGTCAGTATATTATTGAAGGACTCTCTTCTGGATTCATGTTTGTACTAGGTGGTATTGGGATTGTGCTTTTGGATTTGGCAACTGATAAAAACCGAGAAAAGAGTGTCAAGGTTTCTTTTGCATCAGCTGGGATTGTGTTTGTTGTTATTGCTTATGTTATGAGTATGTTGTTTATCCGTATCAAGATCCCAGCTTATCTTCGCTGAAAGTTTTAATCTTTATCTTTGTTTTAATAAGCACTATGTTATTTTTAGGATTTCTCTGAATGGATTTAGTTTAAAGAGCTTGACATATGACACTGTTTTGTAGAAGAGGAGTAAGTGAAGTTGTTTCGGGTATTTGTGCCTTTCGGTAGATGTTGGTTATTGAACTGTATGCAATCTTGGATCTCATGAATGCTTAGTAGAAAATTGTT</gDNA_template>
            <first_frame> T  Q  V  G  F  L  C  F  F  P  *  I  H  *  R  E  K  *  K  Q  Q  I  Y  S  V  V  N  H  R  R  K  I  K  M  P  P  K  S  E  T  Q  P  A  S  S  T  A  K  T  Q  F  S  D  P  S  D  D  Y  S  I  D  P  I  F  H  I  L  R  I  L  P  F  S  F  L  R  P  P  K  L  R  L  K  I  P  S  V  T  L  P  S  A  M  T  V  F  S  L  I  L  L  T  Y  F  M  V  V  S  G  I  V  Y  D  V  I  V  E  P  P  G  I  G  S  T  Q  D  R  F  T  G  A  V  K  P  V  V  F  L  P  G  R  V  N  G  Q  Y  I  I  E  G  L  S  S  G  F  M  F  V  L  G  G  I  G  I  V  L  L  D  L  A  T  D  K  N  R  E  K  S  V  K  V  S  F  A  S  A  G  I  V  F  V  V  I  A  Y  V  M  S  M  L  F  I  R  I  K  I  P  A  Y  L  R  *  K  F  *  S  L  S  L  F  *  *  A  L  C  Y  F  *  D  F  S  E  W  I  *  F  K  E  L  D  I  *  H  C  F  V  E  E  E  *  V  K  L  F  R  V  F  V  P  F  G  R  C  W  L  L  N  C  M  Q  S  W  I  S  *  M  L  S  R  K  L   </first_frame>
            <second_frame>  L  K  W  A  F  C  V  S  S  H  K  F  I  D  A  K  N  K  N  S  K  S  T  P  S  *  T  T  A  G  K  S  K  C  H  P  N  R  K  P  N  R  H  H  P  P  P  K  P  N  F  P  I  R  L  M  T  T  P  S  T  Q  F  S  T  S  S  V  S  S  H  S  P  S  S  A  L  Q  S  S  V  *  K  S  H  R  *  L  F  P  P  P  *  Q  F  S  V  L  S  F  L  P  T  L  W  S  S  L  A  S  F  M  T  S  L  L  N  R  R  E  L  D  Q  P  K  T  G  S  P  E  L  L  N  R  W  C  F  F  R  V  E  L  M  V  S  I  L  L  K  D  S  L  L  D  S  C  L  Y  *  V  V  L  G  L  C  F  W  I  W  Q  L  I  K  T  E  K  R  V  S  R  F  L  L  H  Q  L  G  L  C  L  L  L  L  L  M  L  *  V  C  C  L  S  V  S  R  S  Q  L  I  F  A  E  S  F  N  L  Y  L  C  F  N  K  H  Y  V  I  F  R  I  S  L  N  G  F  S  L  K  S  L  T  Y  D  T  V  L  *  K  R  S  K  *  S  C  F  G  Y  L  C  L  S  V  D  V  G  Y  *  T  V  C  N  L  G  S  H  E  C  L  V  E  N  C  </second_frame>
            <third_frame>   S  S  G  L  F  V  F  L  P  I  N  S  L  T  R  K  I  K  T  A  N  L  L  R  R  E  P  P  P  E  N  Q  N  A  T  Q  I  G  N  P  T  G  I  I  H  R  Q  N  P  I  F  R  S  V  *  *  L  L  H  R  P  N  F  P  H  P  P  Y  P  P  I  L  L  P  P  P  S  K  A  P  S  E  N  P  I  G  D  S  S  L  R  H  D  S  F  Q  S  Y  P  S  Y  L  L  Y  G  R  L  W  H  R  L  *  R  H  C  *  T  A  G  N  W  I  N  P  R  P  V  H  R  S  C  *  T  G  G  V  S  S  G  S  S  *  W  S  V  Y  Y  *  R  T  L  F  W  I  H  V  C  T  R  W  Y  W  D  C  A  F  G  F  G  N  *  *  K  P  R  K  E  C  Q  G  F  F  C  I  S  W  D  C  V  C  C  Y  C  L  C  Y  E  Y  V  V  Y  P  Y  Q  D  P  S  L  S  S  L  K  V  L  I  F  I  F  V  L  I  S  T  M  L  F  L  G  F  L  *  M  D  L  V  *  R  A  *  H  M  T  L  F  C  R  R  G  V  S  E  V  V  S  G  I  C  A  F  R  *  M  L  V  I  E  L  Y  A  I  L  D  L  M  N  A  *  *  K  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20937" stop="20356"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQQIYSVVNHRRKIKMPPKSETQPASSTAKTQFSDPSDDYSIDPIFHILRILPFSFLRPPKLRLKIPSVTLPSAMTVFSLILLTYFMVVSGIVYDVIVEPPGIGSTQDRFTGAVKPVVFLPGRVNGQYIIEGLSSGFMFVLGGIGIVLLDLATDKNREKSVKVSFASAGIVFVVIAYVMSMLFIRIKIPAYLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="22989" PGL_stop="29580"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23129" e_stop="23241"/>
            <exon e_start="24051" e_stop="24126"/>
            <exon e_start="24485" e_stop="24851"/>
            <exon e_start="25890" e_stop="26048"/>
            <exon e_start="27242" e_stop="27322"/>
            <exon e_start="27642" e_stop="27740"/>
            <exon e_start="27985" e_stop="28007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.974" e_score="0.973"/>
          <exon-intron don_prob="0.996" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.714" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.709" acc_prob="0.000" e_score="0.988"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="23129" e_stop="23241" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.974">
            <gDNA_intron_boundary i_start="23242" i_stop="24050" i_length="809"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24051" e_stop="24126" e_length="76"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.972">
            <gDNA_intron_boundary i_start="24127" i_stop="24484" i_length="358"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24485" e_stop="24851" e_length="367"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24852" i_stop="25889" i_length="1038"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25890" e_stop="26048" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.977">
            <gDNA_intron_boundary i_start="26049" i_stop="27241" i_length="1193"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27242" e_stop="27322" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.714" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27323" i_stop="27641" i_length="319"/>
          </intron>
          <exon e_serial="6" e_score="0.988">
            <gDNA_exon_boundary e_start="27642" e_stop="27740" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="0.709" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27741" i_stop="27984" i_length="244"/>
          </intron>
          <exon e_serial="7" e_score="0.957">
            <gDNA_exon_boundary e_start="27985" e_stop="28007" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23129" stop="23241"/>
              <exon start="24051" stop="24126"/>
              <exon start="24485" stop="24851"/>
              <exon start="25890" stop="26044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23129" stop="23241"/>
              <exon start="24051" stop="24126"/>
              <exon start="24485" stop="24851"/>
              <exon start="25890" stop="25939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23142" stop="23241"/>
              <exon start="24051" stop="24126"/>
              <exon start="24485" stop="24851"/>
              <exon start="25890" stop="26048"/>
              <exon start="27242" stop="27322"/>
              <exon start="27642" stop="27724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23166" stop="23241"/>
              <exon start="24051" stop="24126"/>
              <exon start="24485" stop="24851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23169" stop="23241"/>
              <exon start="24051" stop="24126"/>
              <exon start="24485" stop="24851"/>
              <exon start="25890" stop="26006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24606" stop="24851"/>
              <exon start="25890" stop="26048"/>
              <exon start="27242" stop="27322"/>
              <exon start="27642" stop="27740"/>
              <exon start="27985" stop="28007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTACCCCACCCACCCACCCCCATCTCTCACTCTTACACTCTCTCCATGCGTTCTTGTTCATGCTTCAAGGTCCTACTCAAGAACAGGTCAGTCTCATCTGGTAATTGAGGG : CTTCTAATCTTGGAACTGTTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAAGAATCCTCCCTAATTTGCCT : AAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCG : ATATGTGATCCTCCTGTGAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTACCGAAGATCTCTTTGGGACTCTAGTACCATGCCCTTTTCAG : CAACCTTCTTCTTCAAAAAGTGGAACATCTGATCATTTGCCAAAGAAGAGGCCACAGGAAGCAATGTGGTCAGAATATGCG : GATGCTGTTGGATCAGCAGTTGTTTCAAATGATTCCGCAAGAAAGCATGTCAAGTTAGAGCAACAAAAGGGCGACCAAATTCTAGCTCTTCCATCTGGT : CAGCGGTCATGTACTCTTGAATT</gDNA_template>
            <first_frame> H  Y  P  T  H  P  P  P  S  L  T  L  T  L  S  P  C  V  L  V  H  A  S  R  S  Y  S  R  T  G  Q  S  H  L  V  I  E  G :   F  *  S  W  N  C  S  I  S  S  Q  L  S  L  I  M  S  G  R  I  L  P  N  L  P  :  K  L  V  N  L  S  E  V  L  W  N  E  Q  L  V  S  C  M  F  N  C  N  I  N  K  D  *  P  S  C  C  E  E  F  N  L  W  I  S  I  S  F  M  E  D  K  L  W  S  C  *  N  W  E  S  *  F  Q  L  V  F  E  *  S  F  C  S  L  L  F  V  Q  K  T  *  W  R  *  F  S  I  A  E  F  *  V  H  Y  R  N  E  R  R  E  R  W  F  L  C  C  *  E  R  R  S  G  W  S  L  Q  K  L  E  *  L  P  D  P  S  R  I  I   : D  M  *  S  S  C  E  C  V  Q  R  L  C  H  A  *  G  H  R  R  I  S  S  F  L  W  A  *  K  C  S  L  F  Y  Q  S  C  R  S  Y  R  R  S  L  W  D  S  S  T  M  P  F  S   : A  T  F  F  F  K  K  W  N  I  *  S  F  A  K  E  E  A  T  G  S  N  V  V  R  I  C   : G  C  C  W  I  S  S  C  F  K  *  F  R  K  K  A  C  Q  V  R  A  T  K  G  R  P  N  S  S  S  S  I  W   : S  A  V  M  Y  S  *  I </first_frame>
            <second_frame>  T  T  P  P  T  H  P  H  L  S  L  L  H  S  L  H  A  F  L  F  M  L  Q  G  P  T  Q  E  Q  V  S  L  I  W  *  L  R   : A  S  N  L  G  T  V  Q  S  L  R  S  *  V  *  L  C  L  E  E  S  S  L  I  C  L :   S  W  *  I  *  V  K  S  C  G  M  N  S  L  F  H  A  C  S  T  A  I  L  T  R  T  S  H  L  V  V  K  S  S  I  C  G  F  P  S  L  S  W  K  T  S  F  G  H  A  R  I  G  K  V  D  S  N  L  Y  L  N  R  V  S  V  R  C  F  S  S  K  K  H  S  G  D  S  S  P  S  Q  N  S  E  F  T  T  E  M  K  E  E  R  D  G  F  F  V  V  R  K  G  D  L  V  G  V  Y  K  N  L  S  D  C  Q  T  Q  V  G  S  S  :  I  C  D  P  P  V  S  V  Y  K  G  Y  A  M  P  K  D  T  E  E  Y  L  L  S  C  G  L  K  N  A  L  Y  S  I  R  A  A  D  L  T  E  D  L  F  G  T  L  V  P  C  P  F  Q  :  Q  P  S  S  S  K  S  G  T  S  D  H  L  P  K  K  R  P  Q  E  A  M  W  S  E  Y  A  :  D  A  V  G  S  A  V  V  S  N  D  S  A  R  K  H  V  K  L  E  Q  Q  K  G  D  Q  I  L  A  L  P  S  G  :  Q  R  S  C  T  L  E   </second_frame>
            <third_frame>   L  P  H  P  P  T  P  I  S  H  S  Y  T  L  S  M  R  S  C  S  C  F  K  V  L  L  K  N  R  S  V  S  S  G  N  *  G  :  L  L  I  L  E  L  F  N  L  F  A  A  E  S  D  Y  V  W  K  N  P  P  *  F  A   : *  V  G  E  S  E  *  S  P  V  E  *  T  A  C  F  M  H  V  Q  L  Q  Y  *  Q  G  L  A  I  L  L  *  R  V  Q  S  V  D  F  H  L  F  H  G  R  Q  A  L  V  M  L  E  L  G  K  L  I  P  T  C  I  *  I  E  F  L  F  V  A  F  R  P  K  N  I  V  E  I  V  L  H  R  R  I  L  S  S  L  Q  K  *  K  K  R  E  M  V  S  L  L  L  G  K  E  I  W  L  E  S  T  K  T  *  V  I  A  R  P  K  S  D  H  R :   Y  V  I  L  L  *  V  C  T  K  A  M  P  C  L  R  T  Q  K  N  I  F  F  L  V  G  L  K  M  L  S  I  L  S  E  L  Q  I  L  P  K  I  S  L  G  L  *  Y  H  A  L  F  S :   N  L  L  L  Q  K  V  E  H  L  I  I  C  Q  R  R  G  H  R  K  Q  C  G  Q  N  M  R :   M  L  L  D  Q  Q  L  F  Q  M  I  P  Q  E  S  M  S  S  *  S  N  K  R  A  T  K  F  *  L  F  H  L  V :   S  G  H  V  L  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24501" stop="24851"/>
                    <exon start="25890" stop="26048"/>
                    <exon start="27242" stop="27322"/>
                    <exon start="27642" stop="27740"/>
                    <exon start="27985" stop="28005"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKSCGMNSLFHACSTAILTRTSHLVVKSSICGFPSLSWKTSFGHARIGKVDSNLYLNRVSVRCFSSKKHSGDSSPSQNSEFTTEMKEERDGFFVVRKGDLVGVYKNLSDCQTQVGSSICDPPVSVYKGYAMPKDTEEYLLSCGLKNALYSIRAADLTEDLFGTLVPCPFQQPSSSKSGTSDHLPKKRPQEAMWSEYADAVGSAVVSNDSARKHVKLEQQKGDQILALPSGQRSCTLE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="27234" e_stop="27322"/>
            <exon e_start="27642" e_stop="27740"/>
            <exon e_start="27985" e_stop="28080"/>
            <exon e_start="28158" e_stop="28301"/>
            <exon e_start="28770" e_stop="28877"/>
            <exon e_start="29056" e_stop="29107"/>
            <exon e_start="29193" e_stop="29580"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.714" acc_prob="0.999" e_score="0.978"/>
          <exon-intron don_prob="0.709" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.896" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.934" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="27234" e_stop="27322" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.714" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27323" i_stop="27641" i_length="319"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27642" e_stop="27740" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.709" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27741" i_stop="27984" i_length="244"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27985" e_stop="28080" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.896" acc_prob="0.991">
            <gDNA_intron_boundary i_start="28081" i_stop="28157" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28158" e_stop="28301" e_length="144"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.978">
            <gDNA_intron_boundary i_start="28302" i_stop="28769" i_length="468"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28770" e_stop="28877" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.862" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28878" i_stop="29055" i_length="178"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="29056" e_stop="29107" e_length="52"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.934">
            <gDNA_intron_boundary i_start="29108" i_stop="29192" i_length="85"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="29193" e_stop="29580" e_length="388"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27234" stop="27322"/>
              <exon start="27642" stop="27740"/>
              <exon start="27985" stop="28080"/>
              <exon start="28158" stop="28301"/>
              <exon start="28770" stop="28877"/>
              <exon start="29056" stop="29107"/>
              <exon start="29193" stop="29282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28164" stop="28301"/>
              <exon start="28770" stop="28877"/>
              <exon start="29056" stop="29107"/>
              <exon start="29193" stop="29500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28788" stop="28877"/>
              <exon start="29056" stop="29107"/>
              <exon start="29193" stop="29580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29268" stop="29580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219706" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGCAGCAACCTTCTTCTTCAAAAAGTGGAACATCTGATCATTTGCCAAAGAAGAGGCCACAGGAAGCAATGTGGTCAGAATATGCG : GATGCTGTTGGATCAGCAGTTGTTTCAAATGATTCCGCAAGAAAGCATGTCAAGTTAGAGCAACAAAAGGGCGACCAAATTCTAGCTCTTCCATCTGGT : CAGCGGTCATGTACTCTTGAATTCGATGGTGCTTCAAAGGGAAATCCTGGACAAGCTGGTGCAGGAGCTGTTATACGGGCGGATGATGGAAGCATG : ACCCTCAGGCTACGTGAAGGTTTAGGAGTGGCAACAAGCAATCATGCTGAATACAGGGCATTTATTTTGGGTTTGAAACATGCTCTTAGAGAAGGGTTTACTAGTATTCGTGTTCAAGGTGACTCCAAGCTTGTTTGTATGCAG : ATCCAAGGTCTGTGGAAGGTTAAAAATCAAAACATCGCCATGGTGTTTGAGCAGGCAAAACAATTGAAGGAAAGGTTCCTTTCTTTCCGCATCATTCATGTCCTTCGG : GAATCAAACTCTGATGCAGATCAGCAAGCAAACTTGGCTGTTGAACTTCCAG : AGGGTCAAATTCAAGAGGAGGTAGAGAAGTAACAAAACCACACTGATGGTTTTCGCGTACATTACAGACAAGGATTTATTTATACACCCAATTTGAAGGTTTGTGCTATGAAGCCAGTGAATCATTCGTTGATTTAGAGTCAGTACTCTTTAAGATTAATGTTATTGCAATTAGGTTATGTAAATGTATTTGGAACAAATGTTATCATTGTTACCTTTAAATTCTCAGCAATGGCTCTGGGGAACGTGCTCTACGTTCCCCAGATACCCGTAAAAGATCATGAAACTTATTGATACAAATCAATGTCTCTGTCATTTGTAAGATTATTATATGTGTATGTATCTAACAATGCCAGCAAATAAGTTGTAGACTCATTGAGCTGTGATAC</gDNA_template>
            <first_frame> F  C  S  N  L  L  L  Q  K  V  E  H  L  I  I  C  Q  R  R  G  H  R  K  Q  C  G  Q  N  M  R :   M  L  L  D  Q  Q  L  F  Q  M  I  P  Q  E  S  M  S  S  *  S  N  K  R  A  T  K  F  *  L  F  H  L  V :   S  G  H  V  L  L  N  S  M  V  L  Q  R  E  I  L  D  K  L  V  Q  E  L  L  Y  G  R  M  M  E  A  * :   P  S  G  Y  V  K  V  *  E  W  Q  Q  A  I  M  L  N  T  G  H  L  F  W  V  *  N  M  L  L  E  K  G  L  L  V  F  V  F  K  V  T  P  S  L  F  V  C  R :   S  K  V  C  G  R  L  K  I  K  T  S  P  W  C  L  S  R  Q  N  N  *  R  K  G  S  F  L  S  A  S  F  M  S  F  G :   N  Q  T  L  M  Q  I  S  K  Q  T  W  L  L  N  F  Q  :  R  V  K  F  K  R  R  *  R  S  N  K  T  T  L  M  V  F  A  Y  I  T  D  K  D  L  F  I  H  P  I  *  R  F  V  L  *  S  Q  *  I  I  R  *  F  R  V  S  T  L  *  D  *  C  Y  C  N  *  V  M  *  M  Y  L  E  Q  M  L  S  L  L  P  L  N  S  Q  Q  W  L  W  G  T  C  S  T  F  P  R  Y  P  *  K  I  M  K  L  I  D  T  N  Q  C  L  C  H  L  *  D  Y  Y  M  C  M  Y  L  T  M  P  A  N  K  L  *  T  H  *  A  V  I  </first_frame>
            <second_frame>  F  A  A  T  F  F  F  K  K  W  N  I  *  S  F  A  K  E  E  A  T  G  S  N  V  V  R  I  C   : G  C  C  W  I  S  S  C  F  K  *  F  R  K  K  A  C  Q  V  R  A  T  K  G  R  P  N  S  S  S  S  I  W   : S  A  V  M  Y  S  *  I  R  W  C  F  K  G  K  S  W  T  S  W  C  R  S  C  Y  T  G  G  *  W  K  H   : D  P  Q  A  T  *  R  F  R  S  G  N  K  Q  S  C  *  I  Q  G  I  Y  F  G  F  E  T  C  S  *  R  R  V  Y  *  Y  S  C  S  R  *  L  Q  A  C  L  Y  A   : D  P  R  S  V  E  G  *  K  S  K  H  R  H  G  V  *  A  G  K  T  I  E  G  K  V  P  F  F  P  H  H  S  C  P  S   : G  I  K  L  *  C  R  S  A  S  K  L  G  C  *  T  S  R :   G  S  N  S  R  G  G  R  E  V  T  K  P  H  *  W  F  S  R  T  L  Q  T  R  I  Y  L  Y  T  Q  F  E  G  L  C  Y  E  A  S  E  S  F  V  D  L  E  S  V  L  F  K  I  N  V  I  A  I  R  L  C  K  C  I  W  N  K  C  Y  H  C  Y  L  *  I  L  S  N  G  S  G  E  R  A  L  R  S  P  D  T  R  K  R  S  *  N  L  L  I  Q  I  N  V  S  V  I  C  K  I  I  I  C  V  C  I  *  Q  C  Q  Q  I  S  C  R  L  I  E  L  *  Y </second_frame>
            <third_frame>   L  Q  Q  P  S  S  S  K  S  G  T  S  D  H  L  P  K  K  R  P  Q  E  A  M  W  S  E  Y  A  :  D  A  V  G  S  A  V  V  S  N  D  S  A  R  K  H  V  K  L  E  Q  Q  K  G  D  Q  I  L  A  L  P  S  G  :  Q  R  S  C  T  L  E  F  D  G  A  S  K  G  N  P  G  Q  A  G  A  G  A  V  I  R  A  D  D  G  S  M  :  T  L  R  L  R  E  G  L  G  V  A  T  S  N  H  A  E  Y  R  A  F  I  L  G  L  K  H  A  L  R  E  G  F  T  S  I  R  V  Q  G  D  S  K  L  V  C  M  Q  :  I  Q  G  L  W  K  V  K  N  Q  N  I  A  M  V  F  E  Q  A  K  Q  L  K  E  R  F  L  S  F  R  I  I  H  V  L  R  :  E  S  N  S  D  A  D  Q  Q  A  N  L  A  V  E  L  P   : E  G  Q  I  Q  E  E  V  E  K  *  Q  N  H  T  D  G  F  R  V  H  Y  R  Q  G  F  I  Y  T  P  N  L  K  V  C  A  M  K  P  V  N  H  S  L  I  *  S  Q  Y  S  L  R  L  M  L  L  Q  L  G  Y  V  N  V  F  G  T  N  V  I  I  V  T  F  K  F  S  A  M  A  L  G  N  V  L  Y  V  P  Q  I  P  V  K  D  H  E  T  Y  *  Y  K  S  M  S  L  S  F  V  R  L  L  Y  V  Y  V  S  N  N  A  S  K  *  V  V  D  S  L  S  C  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27236" stop="27322"/>
                    <exon start="27642" stop="27740"/>
                    <exon start="27985" stop="28080"/>
                    <exon start="28158" stop="28301"/>
                    <exon start="28770" stop="28877"/>
                    <exon start="29056" stop="29107"/>
                    <exon start="29193" stop="29224"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQQPSSSKSGTSDHLPKKRPQEAMWSEYADAVGSAVVSNDSARKHVKLEQQKGDQILALPSGQRSCTLEFDGASKGNPGQAGAGAVIRADDGSMTLRLREGLGVATSNHAEYRAFILGLKHALREGFTSIRVQGDSKLVCMQIQGLWKVKNQNIAMVFEQAKQLKERFLSFRIIHVLRESNSDADQQANLAVELPEGQIQEEVEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="23151" e_stop="23241"/>
            <exon e_start="24485" e_stop="24851"/>
            <exon e_start="25890" e_stop="26048"/>
            <exon e_start="27242" e_stop="27322"/>
            <exon e_start="27642" e_stop="27740"/>
            <exon e_start="27985" e_stop="28007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="0.992"/>
          <exon-intron don_prob="0.995" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.714" acc_prob="0.999" e_score="0.988"/>
          <exon-intron don_prob="0.709" acc_prob="0.000" e_score="0.960"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23151" e_stop="23241" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.972">
            <gDNA_intron_boundary i_start="23242" i_stop="24484" i_length="1243"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="24485" e_stop="24851" e_length="367"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24852" i_stop="25889" i_length="1038"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25890" e_stop="26048" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.977">
            <gDNA_intron_boundary i_start="26049" i_stop="27241" i_length="1193"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="27242" e_stop="27322" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.714" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27323" i_stop="27641" i_length="319"/>
          </intron>
          <exon e_serial="5" e_score="0.960">
            <gDNA_exon_boundary e_start="27642" e_stop="27740" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.709" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27741" i_stop="27984" i_length="244"/>
          </intron>
          <exon e_serial="6" e_score="0.957">
            <gDNA_exon_boundary e_start="27985" e_stop="28007" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23151" stop="23241"/>
              <exon start="24485" stop="24851"/>
              <exon start="25890" stop="26048"/>
              <exon start="27242" stop="27278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23200" stop="23241"/>
              <exon start="24485" stop="24851"/>
              <exon start="25890" stop="26048"/>
              <exon start="27242" stop="27322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23200" stop="23241"/>
              <exon start="24485" stop="24851"/>
              <exon start="25890" stop="26048"/>
              <exon start="27242" stop="27322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23200" stop="23241"/>
              <exon start="24485" stop="24851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24606" stop="24851"/>
              <exon start="25890" stop="26048"/>
              <exon start="27242" stop="27322"/>
              <exon start="27642" stop="27740"/>
              <exon start="27985" stop="28007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCTCTCACTCTTACACTCTCTCCATGCGTTCTTGTTCATGCTTCAAGGTCCTACTCAAGAACAGGTCAGTCTCATCTGGTAATTGAGGG : AAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCG : ATATGTGATCCTCCTGTGAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTACCGAAGATCTCTTTGGGACTCTAGTACCATGCCCTTTTCAG : CAACCTTCTTCTTCAAAAAGTGGAACATCTGATCATTTGCCAAAGAAGAGGCCACAGGAAGCAATGTGGTCAGAATATGCG : GATGCTGTTGGATCAGCAGTTGTTTCAAATGATTCCGCAAGAAAGCATGTCAAGTTAGAGCAACAAAAGGGCGACCAAATTCTAGCTCTTCCATCTGGT : CAGCGGTCATGTACTCTTGAATT</gDNA_template>
            <first_frame> H  L  S  L  L  H  S  L  H  A  F  L  F  M  L  Q  G  P  T  Q  E  Q  V  S  L  I  W  *  L  R   : E  V  G  E  S  E  *  S  P  V  E  *  T  A  C  F  M  H  V  Q  L  Q  Y  *  Q  G  L  A  I  L  L  *  R  V  Q  S  V  D  F  H  L  F  H  G  R  Q  A  L  V  M  L  E  L  G  K  L  I  P  T  C  I  *  I  E  F  L  F  V  A  F  R  P  K  N  I  V  E  I  V  L  H  R  R  I  L  S  S  L  Q  K  *  K  K  R  E  M  V  S  L  L  L  G  K  E  I  W  L  E  S  T  K  T  *  V  I  A  R  P  K  S  D  H  R :   Y  V  I  L  L  *  V  C  T  K  A  M  P  C  L  R  T  Q  K  N  I  F  F  L  V  G  L  K  M  L  S  I  L  S  E  L  Q  I  L  P  K  I  S  L  G  L  *  Y  H  A  L  F  S :   N  L  L  L  Q  K  V  E  H  L  I  I  C  Q  R  R  G  H  R  K  Q  C  G  Q  N  M  R :   M  L  L  D  Q  Q  L  F  Q  M  I  P  Q  E  S  M  S  S  *  S  N  K  R  A  T  K  F  *  L  F  H  L  V :   S  G  H  V  L  L  N  </first_frame>
            <second_frame>  I  S  H  S  Y  T  L  S  M  R  S  C  S  C  F  K  V  L  L  K  N  R  S  V  S  S  G  N  *  G  :  K  L  V  N  L  S  E  V  L  W  N  E  Q  L  V  S  C  M  F  N  C  N  I  N  K  D  *  P  S  C  C  E  E  F  N  L  W  I  S  I  S  F  M  E  D  K  L  W  S  C  *  N  W  E  S  *  F  Q  L  V  F  E  *  S  F  C  S  L  L  F  V  Q  K  T  *  W  R  *  F  S  I  A  E  F  *  V  H  Y  R  N  E  R  R  E  R  W  F  L  C  C  *  E  R  R  S  G  W  S  L  Q  K  L  E  *  L  P  D  P  S  R  I  I   : D  M  *  S  S  C  E  C  V  Q  R  L  C  H  A  *  G  H  R  R  I  S  S  F  L  W  A  *  K  C  S  L  F  Y  Q  S  C  R  S  Y  R  R  S  L  W  D  S  S  T  M  P  F  S   : A  T  F  F  F  K  K  W  N  I  *  S  F  A  K  E  E  A  T  G  S  N  V  V  R  I  C   : G  C  C  W  I  S  S  C  F  K  *  F  R  K  K  A  C  Q  V  R  A  T  K  G  R  P  N  S  S  S  S  I  W   : S  A  V  M  Y  S  *  I </second_frame>
            <third_frame>   S  L  T  L  T  L  S  P  C  V  L  V  H  A  S  R  S  Y  S  R  T  G  Q  S  H  L  V  I  E  G :   S  W  *  I  *  V  K  S  C  G  M  N  S  L  F  H  A  C  S  T  A  I  L  T  R  T  S  H  L  V  V  K  S  S  I  C  G  F  P  S  L  S  W  K  T  S  F  G  H  A  R  I  G  K  V  D  S  N  L  Y  L  N  R  V  S  V  R  C  F  S  S  K  K  H  S  G  D  S  S  P  S  Q  N  S  E  F  T  T  E  M  K  E  E  R  D  G  F  F  V  V  R  K  G  D  L  V  G  V  Y  K  N  L  S  D  C  Q  T  Q  V  G  S  S  :  I  C  D  P  P  V  S  V  Y  K  G  Y  A  M  P  K  D  T  E  E  Y  L  L  S  C  G  L  K  N  A  L  Y  S  I  R  A  A  D  L  T  E  D  L  F  G  T  L  V  P  C  P  F  Q  :  Q  P  S  S  S  K  S  G  T  S  D  H  L  P  K  K  R  P  Q  E  A  M  W  S  E  Y  A  :  D  A  V  G  S  A  V  V  S  N  D  S  A  R  K  H  V  K  L  E  Q  Q  K  G  D  Q  I  L  A  L  P  S  G  :  Q  R  S  C  T  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24501" stop="24851"/>
                    <exon start="25890" stop="26048"/>
                    <exon start="27242" stop="27322"/>
                    <exon start="27642" stop="27740"/>
                    <exon start="27985" stop="28005"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKSCGMNSLFHACSTAILTRTSHLVVKSSICGFPSLSWKTSFGHARIGKVDSNLYLNRVSVRCFSSKKHSGDSSPSQNSEFTTEMKEERDGFFVVRKGDLVGVYKNLSDCQTQVGSSICDPPVSVYKGYAMPKDTEEYLLSCGLKNALYSIRAADLTEDLFGTLVPCPFQQPSSSKSGTSDHLPKKRPQEAMWSEYADAVGSAVVSNDSARKHVKLEQQKGDQILALPSGQRSCTLE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="23151" e_stop="23216"/>
            <exon e_start="24051" e_stop="24126"/>
            <exon e_start="24485" e_stop="24851"/>
            <exon e_start="25890" e_stop="26048"/>
            <exon e_start="27242" e_stop="27322"/>
            <exon e_start="27642" e_stop="27740"/>
            <exon e_start="27985" e_stop="28007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.714" acc_prob="0.999" e_score="0.988"/>
          <exon-intron don_prob="0.709" acc_prob="0.000" e_score="0.960"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23151" e_stop="23216" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.974">
            <gDNA_intron_boundary i_start="23217" i_stop="24050" i_length="834"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24051" e_stop="24126" e_length="76"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.972">
            <gDNA_intron_boundary i_start="24127" i_stop="24484" i_length="358"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24485" e_stop="24851" e_length="367"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24852" i_stop="25889" i_length="1038"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25890" e_stop="26048" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.977">
            <gDNA_intron_boundary i_start="26049" i_stop="27241" i_length="1193"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="27242" e_stop="27322" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.714" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27323" i_stop="27641" i_length="319"/>
          </intron>
          <exon e_serial="6" e_score="0.960">
            <gDNA_exon_boundary e_start="27642" e_stop="27740" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="0.709" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27741" i_stop="27984" i_length="244"/>
          </intron>
          <exon e_serial="7" e_score="0.957">
            <gDNA_exon_boundary e_start="27985" e_stop="28007" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23151" stop="23216"/>
              <exon start="24051" stop="24126"/>
              <exon start="24485" stop="24828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23155" stop="23216"/>
              <exon start="24051" stop="24126"/>
              <exon start="24485" stop="24851"/>
              <exon start="25890" stop="26048"/>
              <exon start="27242" stop="27255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23157" stop="23216"/>
              <exon start="24051" stop="24126"/>
              <exon start="24485" stop="24851"/>
              <exon start="25890" stop="26044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24606" stop="24851"/>
              <exon start="25890" stop="26048"/>
              <exon start="27242" stop="27322"/>
              <exon start="27642" stop="27740"/>
              <exon start="27985" stop="28007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCTCTCACTCTTACACTCTCTCCATGCGTTCTTGTTCATGCTTCAAGGTCCTACTCAAGAACAG : CTTCTAATCTTGGAACTGTTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAAGAATCCTCCCTAATTTGCCT : AAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCG : ATATGTGATCCTCCTGTGAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTACCGAAGATCTCTTTGGGACTCTAGTACCATGCCCTTTTCAG : CAACCTTCTTCTTCAAAAAGTGGAACATCTGATCATTTGCCAAAGAAGAGGCCACAGGAAGCAATGTGGTCAGAATATGCG : GATGCTGTTGGATCAGCAGTTGTTTCAAATGATTCCGCAAGAAAGCATGTCAAGTTAGAGCAACAAAAGGGCGACCAAATTCTAGCTCTTCCATCTGGT : CAGCGGTCATGTACTCTTGAATT</gDNA_template>
            <first_frame> H  L  S  L  L  H  S  L  H  A  F  L  F  M  L  Q  G  P  T  Q  E  Q  :  L  L  I  L  E  L  F  N  L  F  A  A  E  S  D  Y  V  W  K  N  P  P  *  F  A   : *  V  G  E  S  E  *  S  P  V  E  *  T  A  C  F  M  H  V  Q  L  Q  Y  *  Q  G  L  A  I  L  L  *  R  V  Q  S  V  D  F  H  L  F  H  G  R  Q  A  L  V  M  L  E  L  G  K  L  I  P  T  C  I  *  I  E  F  L  F  V  A  F  R  P  K  N  I  V  E  I  V  L  H  R  R  I  L  S  S  L  Q  K  *  K  K  R  E  M  V  S  L  L  L  G  K  E  I  W  L  E  S  T  K  T  *  V  I  A  R  P  K  S  D  H  R :   Y  V  I  L  L  *  V  C  T  K  A  M  P  C  L  R  T  Q  K  N  I  F  F  L  V  G  L  K  M  L  S  I  L  S  E  L  Q  I  L  P  K  I  S  L  G  L  *  Y  H  A  L  F  S :   N  L  L  L  Q  K  V  E  H  L  I  I  C  Q  R  R  G  H  R  K  Q  C  G  Q  N  M  R :   M  L  L  D  Q  Q  L  F  Q  M  I  P  Q  E  S  M  S  S  *  S  N  K  R  A  T  K  F  *  L  F  H  L  V :   S  G  H  V  L  L  N  </first_frame>
            <second_frame>  I  S  H  S  Y  T  L  S  M  R  S  C  S  C  F  K  V  L  L  K  N  S :   F  *  S  W  N  C  S  I  S  S  Q  L  S  L  I  M  S  G  R  I  L  P  N  L  P  :  K  L  V  N  L  S  E  V  L  W  N  E  Q  L  V  S  C  M  F  N  C  N  I  N  K  D  *  P  S  C  C  E  E  F  N  L  W  I  S  I  S  F  M  E  D  K  L  W  S  C  *  N  W  E  S  *  F  Q  L  V  F  E  *  S  F  C  S  L  L  F  V  Q  K  T  *  W  R  *  F  S  I  A  E  F  *  V  H  Y  R  N  E  R  R  E  R  W  F  L  C  C  *  E  R  R  S  G  W  S  L  Q  K  L  E  *  L  P  D  P  S  R  I  I   : D  M  *  S  S  C  E  C  V  Q  R  L  C  H  A  *  G  H  R  R  I  S  S  F  L  W  A  *  K  C  S  L  F  Y  Q  S  C  R  S  Y  R  R  S  L  W  D  S  S  T  M  P  F  S   : A  T  F  F  F  K  K  W  N  I  *  S  F  A  K  E  E  A  T  G  S  N  V  V  R  I  C   : G  C  C  W  I  S  S  C  F  K  *  F  R  K  K  A  C  Q  V  R  A  T  K  G  R  P  N  S  S  S  S  I  W   : S  A  V  M  Y  S  *  I </second_frame>
            <third_frame>   S  L  T  L  T  L  S  P  C  V  L  V  H  A  S  R  S  Y  S  R  T   : A  S  N  L  G  T  V  Q  S  L  R  S  *  V  *  L  C  L  E  E  S  S  L  I  C  L :   S  W  *  I  *  V  K  S  C  G  M  N  S  L  F  H  A  C  S  T  A  I  L  T  R  T  S  H  L  V  V  K  S  S  I  C  G  F  P  S  L  S  W  K  T  S  F  G  H  A  R  I  G  K  V  D  S  N  L  Y  L  N  R  V  S  V  R  C  F  S  S  K  K  H  S  G  D  S  S  P  S  Q  N  S  E  F  T  T  E  M  K  E  E  R  D  G  F  F  V  V  R  K  G  D  L  V  G  V  Y  K  N  L  S  D  C  Q  T  Q  V  G  S  S  :  I  C  D  P  P  V  S  V  Y  K  G  Y  A  M  P  K  D  T  E  E  Y  L  L  S  C  G  L  K  N  A  L  Y  S  I  R  A  A  D  L  T  E  D  L  F  G  T  L  V  P  C  P  F  Q  :  Q  P  S  S  S  K  S  G  T  S  D  H  L  P  K  K  R  P  Q  E  A  M  W  S  E  Y  A  :  D  A  V  G  S  A  V  V  S  N  D  S  A  R  K  H  V  K  L  E  Q  Q  K  G  D  Q  I  L  A  L  P  S  G  :  Q  R  S  C  T  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24501" stop="24851"/>
                    <exon start="25890" stop="26048"/>
                    <exon start="27242" stop="27322"/>
                    <exon start="27642" stop="27740"/>
                    <exon start="27985" stop="28005"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKSCGMNSLFHACSTAILTRTSHLVVKSSICGFPSLSWKTSFGHARIGKVDSNLYLNRVSVRCFSSKKHSGDSSPSQNSEFTTEMKEERDGFFVVRKGDLVGVYKNLSDCQTQVGSSICDPPVSVYKGYAMPKDTEEYLLSCGLKNALYSIRAADLTEDLFGTLVPCPFQQPSSSKSGTSDHLPKKRPQEAMWSEYADAVGSAVVSNDSARKHVKLEQQKGDQILALPSGQRSCTLE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="24051" e_stop="24126"/>
            <exon e_start="24524" e_stop="24851"/>
            <exon e_start="25890" e_stop="26048"/>
            <exon e_start="27242" e_stop="27322"/>
            <exon e_start="27642" e_stop="27740"/>
            <exon e_start="27985" e_stop="28007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.732" e_score="0.974"/>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="0.970"/>
          <exon-intron don_prob="0.995" acc_prob="0.977" e_score="0.994"/>
          <exon-intron don_prob="0.714" acc_prob="0.999" e_score="0.988"/>
          <exon-intron don_prob="0.709" acc_prob="0.000" e_score="0.960"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="24051" e_stop="24126" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.732">
            <gDNA_intron_boundary i_start="24127" i_stop="24523" i_length="397"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="24524" e_stop="24851" e_length="328"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24852" i_stop="25889" i_length="1038"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="25890" e_stop="26048" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.977">
            <gDNA_intron_boundary i_start="26049" i_stop="27241" i_length="1193"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="27242" e_stop="27322" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.714" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27323" i_stop="27641" i_length="319"/>
          </intron>
          <exon e_serial="5" e_score="0.960">
            <gDNA_exon_boundary e_start="27642" e_stop="27740" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.709" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27741" i_stop="27984" i_length="244"/>
          </intron>
          <exon e_serial="6" e_score="0.957">
            <gDNA_exon_boundary e_start="27985" e_stop="28007" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24051" stop="24126"/>
              <exon start="24524" stop="24851"/>
              <exon start="25890" stop="26048"/>
              <exon start="27242" stop="27284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24606" stop="24851"/>
              <exon start="25890" stop="26048"/>
              <exon start="27242" stop="27322"/>
              <exon start="27642" stop="27740"/>
              <exon start="27985" stop="28007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTAATCTTGGAACTGTTCAATCTCTTCGCAGCTGAGTCTGATTATGTCTGGAAGAATCCTCCCTAATTTGCCT : CTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCG : ATATGTGATCCTCCTGTGAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTACCGAAGATCTCTTTGGGACTCTAGTACCATGCCCTTTTCAG : CAACCTTCTTCTTCAAAAAGTGGAACATCTGATCATTTGCCAAAGAAGAGGCCACAGGAAGCAATGTGGTCAGAATATGCG : GATGCTGTTGGATCAGCAGTTGTTTCAAATGATTCCGCAAGAAAGCATGTCAAGTTAGAGCAACAAAAGGGCGACCAAATTCTAGCTCTTCCATCTGGT : CAGCGGTCATGTACTCTTGAATT</gDNA_template>
            <first_frame> L  L  I  L  E  L  F  N  L  F  A  A  E  S  D  Y  V  W  K  N  P  P  *  F  A   : S  C  F  M  H  V  Q  L  Q  Y  *  Q  G  L  A  I  L  L  *  R  V  Q  S  V  D  F  H  L  F  H  G  R  Q  A  L  V  M  L  E  L  G  K  L  I  P  T  C  I  *  I  E  F  L  F  V  A  F  R  P  K  N  I  V  E  I  V  L  H  R  R  I  L  S  S  L  Q  K  *  K  K  R  E  M  V  S  L  L  L  G  K  E  I  W  L  E  S  T  K  T  *  V  I  A  R  P  K  S  D  H  R :   Y  V  I  L  L  *  V  C  T  K  A  M  P  C  L  R  T  Q  K  N  I  F  F  L  V  G  L  K  M  L  S  I  L  S  E  L  Q  I  L  P  K  I  S  L  G  L  *  Y  H  A  L  F  S :   N  L  L  L  Q  K  V  E  H  L  I  I  C  Q  R  R  G  H  R  K  Q  C  G  Q  N  M  R :   M  L  L  D  Q  Q  L  F  Q  M  I  P  Q  E  S  M  S  S  *  S  N  K  R  A  T  K  F  *  L  F  H  L  V :   S  G  H  V  L  L  N  </first_frame>
            <second_frame>  F  *  S  W  N  C  S  I  S  S  Q  L  S  L  I  M  S  G  R  I  L  P  N  L  P  :  L  V  S  C  M  F  N  C  N  I  N  K  D  *  P  S  C  C  E  E  F  N  L  W  I  S  I  S  F  M  E  D  K  L  W  S  C  *  N  W  E  S  *  F  Q  L  V  F  E  *  S  F  C  S  L  L  F  V  Q  K  T  *  W  R  *  F  S  I  A  E  F  *  V  H  Y  R  N  E  R  R  E  R  W  F  L  C  C  *  E  R  R  S  G  W  S  L  Q  K  L  E  *  L  P  D  P  S  R  I  I   : D  M  *  S  S  C  E  C  V  Q  R  L  C  H  A  *  G  H  R  R  I  S  S  F  L  W  A  *  K  C  S  L  F  Y  Q  S  C  R  S  Y  R  R  S  L  W  D  S  S  T  M  P  F  S   : A  T  F  F  F  K  K  W  N  I  *  S  F  A  K  E  E  A  T  G  S  N  V  V  R  I  C   : G  C  C  W  I  S  S  C  F  K  *  F  R  K  K  A  C  Q  V  R  A  T  K  G  R  P  N  S  S  S  S  I  W   : S  A  V  M  Y  S  *  I </second_frame>
            <third_frame>   S  N  L  G  T  V  Q  S  L  R  S  *  V  *  L  C  L  E  E  S  S  L  I  C  L :   L  F  H  A  C  S  T  A  I  L  T  R  T  S  H  L  V  V  K  S  S  I  C  G  F  P  S  L  S  W  K  T  S  F  G  H  A  R  I  G  K  V  D  S  N  L  Y  L  N  R  V  S  V  R  C  F  S  S  K  K  H  S  G  D  S  S  P  S  Q  N  S  E  F  T  T  E  M  K  E  E  R  D  G  F  F  V  V  R  K  G  D  L  V  G  V  Y  K  N  L  S  D  C  Q  T  Q  V  G  S  S  :  I  C  D  P  P  V  S  V  Y  K  G  Y  A  M  P  K  D  T  E  E  Y  L  L  S  C  G  L  K  N  A  L  Y  S  I  R  A  A  D  L  T  E  D  L  F  G  T  L  V  P  C  P  F  Q  :  Q  P  S  S  S  K  S  G  T  S  D  H  L  P  K  K  R  P  Q  E  A  M  W  S  E  Y  A  :  D  A  V  G  S  A  V  V  S  N  D  S  A  R  K  H  V  K  L  E  Q  Q  K  G  D  Q  I  L  A  L  P  S  G  :  Q  R  S  C  T  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24095" stop="24126"/>
                    <exon start="24524" stop="24851"/>
                    <exon start="25890" stop="26048"/>
                    <exon start="27242" stop="27322"/>
                    <exon start="27642" stop="27740"/>
                    <exon start="27985" stop="28005"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCLEESSLICLLFHACSTAILTRTSHLVVKSSICGFPSLSWKTSFGHARIGKVDSNLYLNRVSVRCFSSKKHSGDSSPSQNSEFTTEMKEERDGFFVVRKGDLVGVYKNLSDCQTQVGSSICDPPVSVYKGYAMPKDTEEYLLSCGLKNALYSIRAADLTEDLFGTLVPCPFQQPSSSKSGTSDHLPKKRPQEAMWSEYADAVGSAVVSNDSARKHVKLEQQKGDQILALPSGQRSCTLE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="22989" e_stop="23216"/>
            <exon e_start="24485" e_stop="24851"/>
            <exon e_start="25890" e_stop="26048"/>
            <exon e_start="27242" e_stop="27322"/>
            <exon e_start="27642" e_stop="27740"/>
            <exon e_start="27985" e_stop="28007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.977" e_score="0.994"/>
          <exon-intron don_prob="0.714" acc_prob="0.999" e_score="0.988"/>
          <exon-intron don_prob="0.709" acc_prob="0.000" e_score="0.960"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22989" e_stop="23216" e_length="228"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.972">
            <gDNA_intron_boundary i_start="23217" i_stop="24484" i_length="1268"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24485" e_stop="24851" e_length="367"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24852" i_stop="25889" i_length="1038"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="25890" e_stop="26048" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.977">
            <gDNA_intron_boundary i_start="26049" i_stop="27241" i_length="1193"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="27242" e_stop="27322" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.714" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27323" i_stop="27641" i_length="319"/>
          </intron>
          <exon e_serial="5" e_score="0.960">
            <gDNA_exon_boundary e_start="27642" e_stop="27740" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.709" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27741" i_stop="27984" i_length="244"/>
          </intron>
          <exon e_serial="6" e_score="0.957">
            <gDNA_exon_boundary e_start="27985" e_stop="28007" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22989" stop="23216"/>
              <exon start="24485" stop="24851"/>
              <exon start="25890" stop="25991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24606" stop="24851"/>
              <exon start="25890" stop="26048"/>
              <exon start="27242" stop="27322"/>
              <exon start="27642" stop="27740"/>
              <exon start="27985" stop="28007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGGCTAATACCGTACTACCACTACTGCTGAAAAGTTACACCTACCCACCCCCACCCACCCCACTACCCCACGTCACCCCACTACCCCATCTCATCAACCCCCATCTCACCCATACTCTATACACCCTCCCACCCACTCCACTACCCCACCCACCCACCCCCATCTCTCACTCTTACACTCTCTCCATGCGTTCTTGTTCATGCTTCAAGGTCCTACTCAAGAACAG : AAGTTGGTGAATCTGAGTGAAGTCCTGTGGAATGAACAGCTTGTTTCATGCATGTTCAACTGCAATATTAACAAGGACTAGCCATCTTGTTGTGAAGAGTTCAATCTGTGGATTTCCATCTCTTTCATGGAAGACAAGCTTTGGTCATGCTAGAATTGGGAAAGTTGATTCCAACTTGTATTTGAATAGAGTTTCTGTTCGTTGCTTTTCGTCCAAAAAACATAGTGGAGATAGTTCTCCATCGCAGAATTCTGAGTTCACTACAGAAATGAAAGAAGAGAGAGATGGTTTCTTTGTTGTTAGGAAAGGAGATCTGGTTGGAGTCTACAAAAACTTGAGTGATTGCCAGACCCAAGTCGGATCATCG : ATATGTGATCCTCCTGTGAGTGTGTACAAAGGCTATGCCATGCCTAAGGACACAGAAGAATATCTTCTTTCTTGTGGGCTTAAAAATGCTCTCTATTCTATCAGAGCTGCAGATCTTACCGAAGATCTCTTTGGGACTCTAGTACCATGCCCTTTTCAG : CAACCTTCTTCTTCAAAAAGTGGAACATCTGATCATTTGCCAAAGAAGAGGCCACAGGAAGCAATGTGGTCAGAATATGCG : GATGCTGTTGGATCAGCAGTTGTTTCAAATGATTCCGCAAGAAAGCATGTCAAGTTAGAGCAACAAAAGGGCGACCAAATTCTAGCTCTTCCATCTGGT : CAGCGGTCATGTACTCTTGAATT</gDNA_template>
            <first_frame> K  G  *  Y  R  T  T  T  T  A  E  K  L  H  L  P  T  P  T  H  P  T  T  P  R  H  P  T  T  P  S  H  Q  P  P  S  H  P  Y  S  I  H  P  P  T  H  S  T  T  P  P  T  H  P  H  L  S  L  L  H  S  L  H  A  F  L  F  M  L  Q  G  P  T  Q  E  Q  :  K  L  V  N  L  S  E  V  L  W  N  E  Q  L  V  S  C  M  F  N  C  N  I  N  K  D  *  P  S  C  C  E  E  F  N  L  W  I  S  I  S  F  M  E  D  K  L  W  S  C  *  N  W  E  S  *  F  Q  L  V  F  E  *  S  F  C  S  L  L  F  V  Q  K  T  *  W  R  *  F  S  I  A  E  F  *  V  H  Y  R  N  E  R  R  E  R  W  F  L  C  C  *  E  R  R  S  G  W  S  L  Q  K  L  E  *  L  P  D  P  S  R  I  I   : D  M  *  S  S  C  E  C  V  Q  R  L  C  H  A  *  G  H  R  R  I  S  S  F  L  W  A  *  K  C  S  L  F  Y  Q  S  C  R  S  Y  R  R  S  L  W  D  S  S  T  M  P  F  S   : A  T  F  F  F  K  K  W  N  I  *  S  F  A  K  E  E  A  T  G  S  N  V  V  R  I  C   : G  C  C  W  I  S  S  C  F  K  *  F  R  K  K  A  C  Q  V  R  A  T  K  G  R  P  N  S  S  S  S  I  W   : S  A  V  M  Y  S  *  I </first_frame>
            <second_frame>  K  A  N  T  V  L  P  L  L  L  K  S  Y  T  Y  P  P  P  P  T  P  L  P  H  V  T  P  L  P  H  L  I  N  P  H  L  T  H  T  L  Y  T  L  P  P  T  P  L  P  H  P  P  T  P  I  S  H  S  Y  T  L  S  M  R  S  C  S  C  F  K  V  L  L  K  N  R :   S  W  *  I  *  V  K  S  C  G  M  N  S  L  F  H  A  C  S  T  A  I  L  T  R  T  S  H  L  V  V  K  S  S  I  C  G  F  P  S  L  S  W  K  T  S  F  G  H  A  R  I  G  K  V  D  S  N  L  Y  L  N  R  V  S  V  R  C  F  S  S  K  K  H  S  G  D  S  S  P  S  Q  N  S  E  F  T  T  E  M  K  E  E  R  D  G  F  F  V  V  R  K  G  D  L  V  G  V  Y  K  N  L  S  D  C  Q  T  Q  V  G  S  S  :  I  C  D  P  P  V  S  V  Y  K  G  Y  A  M  P  K  D  T  E  E  Y  L  L  S  C  G  L  K  N  A  L  Y  S  I  R  A  A  D  L  T  E  D  L  F  G  T  L  V  P  C  P  F  Q  :  Q  P  S  S  S  K  S  G  T  S  D  H  L  P  K  K  R  P  Q  E  A  M  W  S  E  Y  A  :  D  A  V  G  S  A  V  V  S  N  D  S  A  R  K  H  V  K  L  E  Q  Q  K  G  D  Q  I  L  A  L  P  S  G  :  Q  R  S  C  T  L  E   </second_frame>
            <third_frame>   R  L  I  P  Y  Y  H  Y  C  *  K  V  T  P  T  H  P  H  P  P  H  Y  P  T  S  P  H  Y  P  I  S  S  T  P  I  S  P  I  L  Y  T  P  S  H  P  L  H  Y  P  T  H  P  P  P  S  L  T  L  T  L  S  P  C  V  L  V  H  A  S  R  S  Y  S  R  T   : E  V  G  E  S  E  *  S  P  V  E  *  T  A  C  F  M  H  V  Q  L  Q  Y  *  Q  G  L  A  I  L  L  *  R  V  Q  S  V  D  F  H  L  F  H  G  R  Q  A  L  V  M  L  E  L  G  K  L  I  P  T  C  I  *  I  E  F  L  F  V  A  F  R  P  K  N  I  V  E  I  V  L  H  R  R  I  L  S  S  L  Q  K  *  K  K  R  E  M  V  S  L  L  L  G  K  E  I  W  L  E  S  T  K  T  *  V  I  A  R  P  K  S  D  H  R :   Y  V  I  L  L  *  V  C  T  K  A  M  P  C  L  R  T  Q  K  N  I  F  F  L  V  G  L  K  M  L  S  I  L  S  E  L  Q  I  L  P  K  I  S  L  G  L  *  Y  H  A  L  F  S :   N  L  L  L  Q  K  V  E  H  L  I  I  C  Q  R  R  G  H  R  K  Q  C  G  Q  N  M  R :   M  L  L  D  Q  Q  L  F  Q  M  I  P  Q  E  S  M  S  S  *  S  N  K  R  A  T  K  F  *  L  F  H  L  V :   S  G  H  V  L  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24501" stop="24851"/>
                    <exon start="25890" stop="26048"/>
                    <exon start="27242" stop="27322"/>
                    <exon start="27642" stop="27740"/>
                    <exon start="27985" stop="28005"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKSCGMNSLFHACSTAILTRTSHLVVKSSICGFPSLSWKTSFGHARIGKVDSNLYLNRVSVRCFSSKKHSGDSSPSQNSEFTTEMKEERDGFFVVRKGDLVGVYKNLSDCQTQVGSSICDPPVSVYKGYAMPKDTEEYLLSCGLKNALYSIRAADLTEDLFGTLVPCPFQQPSSSKSGTSDHLPKKRPQEAMWSEYADAVGSAVVSNDSARKHVKLEQQKGDQILALPSGQRSCTLE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22990" stop="23216"/>
                    <exon start="24485" stop="24494"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KANTVLPLLLKSYTYPPPPTPLPHVTPLPHLINPHLTHTLYTLPPTPLPHPPTPISHSYTLSMRSCSCFKVLLKNRSW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="30312" PGL_stop="32335"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30312" e_stop="30569"/>
            <exon e_start="32122" e_stop="32335"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30312" e_stop="30569" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="30570" i_stop="32121" i_length="1552"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32122" e_stop="32335" e_length="214"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30312" stop="30569"/>
              <exon start="32122" stop="32335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215061" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATTTTGATGATTAGGAGAGGTTTACGGTTACTGGCTACCGGAAATTTGAACTCCTCGCCGTTGATTTACCGGCGGCATTCGTTTTACTCGACGTCGTTTTTCTCTAGTTCGTCTCGGTTGAATGCTAACTTTGCCGCAGATGATTTGCTGCTCGGCGATCAATTAGCTACCTTGGCTTCCAAAGCGGAGACGTCTCAGAATCTACTTCAGCCTGGTGTCGTTGTCTATGACGGCGTTTGTCATCTCTGTCACAACG : CTGCACTGAGGGTTCTAGCTCACTTGCCATTACCTTACTCTGCGCTGAGTTACTTCATGATTGTACCTACTCCTTTAAGGGATGCTGTTTACGATCATGTTGCCAAGGAGAGGTATAAATGGTTTGGGAAGAGTGATGACTGTTTAGTTCTCCGGGAACAAGACTTGCTTGATCGCTTCATTGATAGGGAAGAGTTGCTTGAACGTAGCCGATC</gDNA_template>
            <first_frame> R  F  *  *  L  G  E  V  Y  G  Y  W  L  P  E  I  *  T  P  R  R  *  F  T  G  G  I  R  F  T  R  R  R  F  S  L  V  R  L  G  *  M  L  T  L  P  Q  M  I  C  C  S  A  I  N  *  L  P  W  L  P  K  R  R  R  L  R  I  Y  F  S  L  V  S  L  S  M  T  A  F  V  I  S  V  T  T  :  L  H  *  G  F  *  L  T  C  H  Y  L  T  L  R  *  V  T  S  *  L  Y  L  L  L  *  G  M  L  F  T  I  M  L  P  R  R  G  I  N  G  L  G  R  V  M  T  V  *  F  S  G  N  K  T  C  L  I  A  S  L  I  G  K  S  C  L  N  V  A  D  </first_frame>
            <second_frame>  D  F  D  D  *  E  R  F  T  V  T  G  Y  R  K  F  E  L  L  A  V  D  L  P  A  A  F  V  L  L  D  V  V  F  L  *  F  V  S  V  E  C  *  L  C  R  R  *  F  A  A  R  R  S  I  S  Y  L  G  F  Q  S  G  D  V  S  E  S  T  S  A  W  C  R  C  L  *  R  R  L  S  S  L  S  Q  R :   C  T  E  G  S  S  S  L  A  I  T  L  L  C  A  E  L  L  H  D  C  T  Y  S  F  K  G  C  C  L  R  S  C  C  Q  G  E  V  *  M  V  W  E  E  *  *  L  F  S  S  P  G  T  R  L  A  *  S  L  H  *  *  G  R  V  A  *  T  *  P  I </second_frame>
            <third_frame>   I  L  M  I  R  R  G  L  R  L  L  A  T  G  N  L  N  S  S  P  L  I  Y  R  R  H  S  F  Y  S  T  S  F  F  S  S  S  S  R  L  N  A  N  F  A  A  D  D  L  L  L  G  D  Q  L  A  T  L  A  S  K  A  E  T  S  Q  N  L  L  Q  P  G  V  V  V  Y  D  G  V  C  H  L  C  H  N   : A  A  L  R  V  L  A  H  L  P  L  P  Y  S  A  L  S  Y  F  M  I  V  P  T  P  L  R  D  A  V  Y  D  H  V  A  K  E  R  Y  K  W  F  G  K  S  D  D  C  L  V  L  R  E  Q  D  L  L  D  R  F  I  D  R  E  E  L  L  E  R  S  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30314" stop="30569"/>
                    <exon start="32122" stop="32333"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILMIRRGLRLLATGNLNSSPLIYRRHSFYSTSFFSSSSRLNANFAADDLLLGDQLATLASKAETSQNLLQPGVVVYDGVCHLCHNAALRVLAHLPLPYSALSYFMIVPTPLRDAVYDHVAKERYKWFGKSDDCLVLREQDLLDRFIDREELLERSR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="34398" PGL_stop="32467"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34398" e_stop="34157"/>
            <exon e_start="34037" e_stop="33942"/>
            <exon e_start="32961" e_stop="32467"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.839"/>
          <exon-intron don_prob="0.993" acc_prob="0.935" e_score="0.979"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.839">
            <gDNA_exon_boundary e_start="34398" e_stop="34157" e_length="242"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="34156" i_stop="34038" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="34037" e_stop="33942" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.935">
            <gDNA_intron_boundary i_start="33941" i_stop="32962" i_length="980"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="32961" e_stop="32467" e_length="495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34398" stop="34157"/>
              <exon start="34037" stop="33942"/>
              <exon start="32961" stop="32765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32934" stop="32467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32888" stop="32467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229070" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCAACTCTGGGTGCTAAAATGGCTTCGGCTATTTCACTTGTCTCTTCATCCATTCTCCTTTCTTCTTCGTCTTCGCCCTCTGTTTATCTTCCAATCTCAAATTCAGTCAGTTGGGTTTCATCTTCTTCATCATACAGATGTATTTCCTCTTGGGTTTCTCCCAAACGATGCAGACAAAACCTTATTTGCAGAGCTGCTGAATACAAATTCCCTGACCCCATTCCTGAGTTTGCTGATGCT : GAAACAGAGAAGTTCAGAGATCATTTGCTTAAGAAACTTCCAAAGAAGGATATCTATGGAGATTCTGTTGAAGAAATTGTTGGAATCTGCACTGAG : ATCCTCAACGAGTTCTTACACGCTGAGTATGGTGGTCCAGGAACATTACTGGTTGTTCCATTCATCGATATGGCTGATACCATAAACGACAGAGGTTTACCAGGAGGACCACAAGCTGCACGCGCTGCAGTCAAATGGGCACAAAGTCATGTTGACAACGATTGGAAAGAATGGAATAGTGGCAAGAAAAAGTAACTTATCAACCAAGATCCAGAAGGAATGGAATAGTGGCAAGAAAAGATGATCCAACAACCAAGATCTGTTGCCAGAAGTTTTGATGCATGATGCTATTTTTGTGTTGGTAACTCCCTTTACAGTAGTATGTGATAGTATAGGACTAGAAATTAAAGGACTATGTAGAGAAACTAGTCACAAAAGTTTCTCATTCTCACGATGGCACTTTGTTATATTAATGATGAAACCAAACGCAAGCATTCAACAGGCAAAAGGTTCAGATGTACTTTTCGTCAATGACAAAAAACGAAGGCATTCCCA</gDNA_template>
            <first_frame> V  Q  L  W  V  L  K  W  L  R  L  F  H  L  S  L  H  P  F  S  F  L  L  R  L  R  P  L  F  I  F  Q  S  Q  I  Q  S  V  G  F  H  L  L  H  H  T  D  V  F  P  L  G  F  L  P  N  D  A  D  K  T  L  F  A  E  L  L  N  T  N  S  L  T  P  F  L  S  L  L  M  L :   K  Q  R  S  S  E  I  I  C  L  R  N  F  Q  R  R  I  S  M  E  I  L  L  K  K  L  L  E  S  A  L  R :   S  S  T  S  S  Y  T  L  S  M  V  V  Q  E  H  Y  W  L  F  H  S  S  I  W  L  I  P  *  T  T  E  V  Y  Q  E  D  H  K  L  H  A  L  Q  S  N  G  H  K  V  M  L  T  T  I  G  K  N  G  I  V  A  R  K  S  N  L  S  T  K  I  Q  K  E  W  N  S  G  K  K  R  *  S  N  N  Q  D  L  L  P  E  V  L  M  H  D  A  I  F  V  L  V  T  P  F  T  V  V  C  D  S  I  G  L  E  I  K  G  L  C  R  E  T  S  H  K  S  F  S  F  S  R  W  H  F  V  I  L  M  M  K  P  N  A  S  I  Q  Q  A  K  G  S  D  V  L  F  V  N  D  K  K  R  R  H  S   </first_frame>
            <second_frame>  F  N  S  G  C  *  N  G  F  G  Y  F  T  C  L  F  I  H  S  P  F  F  F  V  F  A  L  C  L  S  S  N  L  K  F  S  Q  L  G  F  I  F  F  I  I  Q  M  Y  F  L  L  G  F  S  Q  T  M  Q  T  K  P  Y  L  Q  S  C  *  I  Q  I  P  *  P  H  S  *  V  C  *  C   : *  N  R  E  V  Q  R  S  F  A  *  E  T  S  K  E  G  Y  L  W  R  F  C  *  R  N  C  W  N  L  H  *   : D  P  Q  R  V  L  T  R  *  V  W  W  S  R  N  I  T  G  C  S  I  H  R  Y  G  *  Y  H  K  R  Q  R  F  T  R  R  T  T  S  C  T  R  C  S  Q  M  G  T  K  S  C  *  Q  R  L  E  R  M  E  *  W  Q  E  K  V  T  Y  Q  P  R  S  R  R  N  G  I  V  A  R  K  D  D  P  T  T  K  I  C  C  Q  K  F  *  C  M  M  L  F  L  C  W  *  L  P  L  Q  *  Y  V  I  V  *  D  *  K  L  K  D  Y  V  E  K  L  V  T  K  V  S  H  S  H  D  G  T  L  L  Y  *  *  *  N  Q  T  Q  A  F  N  R  Q  K  V  Q  M  Y  F  S  S  M  T  K  N  E  G  I  P  </second_frame>
            <third_frame>   S  T  L  G  A  K  M  A  S  A  I  S  L  V  S  S  S  I  L  L  S  S  S  S  S  P  S  V  Y  L  P  I  S  N  S  V  S  W  V  S  S  S  S  S  Y  R  C  I  S  S  W  V  S  P  K  R  C  R  Q  N  L  I  C  R  A  A  E  Y  K  F  P  D  P  I  P  E  F  A  D  A  :  E  T  E  K  F  R  D  H  L  L  K  K  L  P  K  K  D  I  Y  G  D  S  V  E  E  I  V  G  I  C  T  E  :  I  L  N  E  F  L  H  A  E  Y  G  G  P  G  T  L  L  V  V  P  F  I  D  M  A  D  T  I  N  D  R  G  L  P  G  G  P  Q  A  A  R  A  A  V  K  W  A  Q  S  H  V  D  N  D  W  K  E  W  N  S  G  K  K  K  *  L  I  N  Q  D  P  E  G  M  E  *  W  Q  E  K  M  I  Q  Q  P  R  S  V  A  R  S  F  D  A  *  C  Y  F  C  V  G  N  S  L  Y  S  S  M  *  *  Y  R  T  R  N  *  R  T  M  *  R  N  *  S  Q  K  F  L  I  L  T  M  A  L  C  Y  I  N  D  E  T  K  R  K  H  S  T  G  K  R  F  R  C  T  F  R  Q  *  Q  K  T  K  A  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34396" stop="34157"/>
                    <exon start="34037" stop="33942"/>
                    <exon start="32961" stop="32767"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STLGAKMASAISLVSSSILLSSSSSPSVYLPISNSVSWVSSSSSYRCISSWVSPKRCRQNLICRAAEYKFPDPIPEFADAETEKFRDHLLKKLPKKDIYGDSVEEIVGICTEILNEFLHAEYGGPGTLLVVPFIDMADTINDRGLPGGPQAARAAVKWAQSHVDNDWKEWNSGKKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32717" stop="32469"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNNQDLLPEVLMHDAIFVLVTPFTVVCDSIGLEIKGLCRETSHKSFSFSRWHFVILMMKPNASIQQAKGSDVLFVNDKKRRHS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="42999" PGL_stop="38007"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42965" e_stop="42877"/>
            <exon e_start="42788" e_stop="42651"/>
            <exon e_start="40236" e_stop="39901"/>
            <exon e_start="39783" e_stop="39448"/>
            <exon e_start="39180" e_stop="39102"/>
            <exon e_start="38542" e_stop="38363"/>
            <exon e_start="38276" e_stop="38223"/>
            <exon e_start="38085" e_stop="38007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.955"/>
          <exon-intron don_prob="0.691" acc_prob="0.990" e_score="0.975"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="0.944"/>
          <exon-intron don_prob="0.931" acc_prob="0.980" e_score="0.926"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42965" e_stop="42877" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42876" i_stop="42789" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42788" e_stop="42651" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.939">
            <gDNA_intron_boundary i_start="42650" i_stop="40237" i_length="2414"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40236" e_stop="39901" e_length="336"/>
          </exon>
          <intron i_serial="3" don_prob="0.891" acc_prob="0.984">
            <gDNA_intron_boundary i_start="39900" i_stop="39784" i_length="117"/>
          </intron>
          <exon e_serial="4" e_score="0.955">
            <gDNA_exon_boundary e_start="39783" e_stop="39448" e_length="336"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39447" i_stop="39181" i_length="267"/>
          </intron>
          <exon e_serial="5" e_score="0.975">
            <gDNA_exon_boundary e_start="39180" e_stop="39102" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.691" acc_prob="0.990">
            <gDNA_intron_boundary i_start="39101" i_stop="38543" i_length="559"/>
          </intron>
          <exon e_serial="6" e_score="0.944">
            <gDNA_exon_boundary e_start="38542" e_stop="38363" e_length="180"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="38362" i_stop="38277" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="0.926">
            <gDNA_exon_boundary e_start="38276" e_stop="38223" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.931" acc_prob="0.980">
            <gDNA_intron_boundary i_start="38222" i_stop="38086" i_length="137"/>
          </intron>
          <exon e_serial="8" e_score="0.911">
            <gDNA_exon_boundary e_start="38085" e_stop="38007" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42965" stop="42877"/>
              <exon start="42788" stop="42651"/>
              <exon start="40236" stop="39910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39918" stop="39901"/>
              <exon start="39783" stop="39448"/>
              <exon start="39180" stop="39102"/>
              <exon start="38542" stop="38363"/>
              <exon start="38276" stop="38223"/>
              <exon start="38085" stop="38007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39918" stop="39901"/>
              <exon start="39783" stop="39448"/>
              <exon start="39180" stop="39102"/>
              <exon start="38542" stop="38363"/>
              <exon start="38276" stop="38235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39918" stop="39901"/>
              <exon start="39783" stop="39448"/>
              <exon start="39180" stop="39102"/>
              <exon start="38542" stop="38419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAATCTCCGCCGCGTGATCCTAATGGAATGTTTTCCGGTATGGTTGTCTTCTTTGTCGGAACCGGAGTTATGTCCCTCCGGCTACAG : ATATGGAAGAGGAAATTGTTGCAAATGGGGGCTATATTTAACGACCGGTTTACTGGAAATGTAACTCATGTTTTTGCAAAGGATGCAAATTTGCTTCTTGAGAAATTTGATAAAGAACTTCTGATTCGCACCAAAGCT : AAATTTCTCTCGTATCAGTGGCTAGAGGACAGCTTAATACAAGGAGAAAAAGCATCTGAGGATCTGTATGTCTTATCCCTGCAATCAGGAGGAGGAAAGTCCCTTAGTCCTAAAGCTGATAATGACGGTCATTCTGATAATGACGGTCATTCTAGAGTTGCACTAAAGAAAAGTCGAATATCTGCTGAAGATGCCAAGAATTCATGCCCAAGACACGTTAATGACAATAAAGACCGTGTTGATCCACGAGATACTAAAAGTGCCTCTTTACTTGCATCACACTCTTCAAGCCCAGAAGTGACAAGTCCAGAGGCCATTCATTCTCTTAATAAGCCT : GTTGGAACATCAGACTCATCTTCACTTTATAAGCCTCCGGATTTAAACCGAAATATCACTCAGATATTCGGGAAGCTTCTCAACATATATAGAGGTAAAATATCTTTTCATACATGTTATTTTTGTAGCTTTTCTCTCACAGATGCCTTTGAGTTAAAAGCTTAAACTTTCAAAGTATGATACAATGGCTGATAGTTTATTATAGCACTGGGTGATGACCGGAGATCATTCAGCTATTATAAAGCTATACCAGTTATTGAGAAACTGCCATTCAAAATTGAGAGTGTGGACCAGGTTAAGCACCTACCTTCTATTGGAAAGTCAATGCAAGATCAT : TGTTCTTTTACTGCAGATTCAGGAGATAGTGACCACAGGAAAGCTGTCCAAATTGGAACACTTTGAGAAGGATGAAAAG : GTAAAAACAATCAGCTTATTTGGAGAGGTTTGGGGTGTTGGTCCATCTACTGCCCTAAAACTTTATGAGAAAGGACACCGAACTCTTGATGACCTTAGAAATGAGGAGTCACTGACTCGTTCTCAAAGGATAGGGTTGAAATATTTTGATGACATCCAGACCAGGATTCAACGGCATGAG : GTCAAAGAGATGGAACGTTTGCTACAGAAAGTTGGAGAAGAAATTTTGCCTGGT : GTGATTGTTGTGTGTGGAGGATCATATAGACGTGGAAAGGCTTCTTGCGGTGATATGGATATTGTTATTACTCATCCTG</gDNA_template>
            <first_frame> L  N  L  R  R  V  I  L  M  E  C  F  P  V  W  L  S  S  L  S  E  P  E  L  C  P  S  G  Y  R :   Y  G  R  G  N  C  C  K  W  G  L  Y  L  T  T  G  L  L  E  M  *  L  M  F  L  Q  R  M  Q  I  C  F  L  R  N  L  I  K  N  F  *  F  A  P  K  L :   N  F  S  R  I  S  G  *  R  T  A  *  Y  K  E  K  K  H  L  R  I  C  M  S  Y  P  C  N  Q  E  E  E  S  P  L  V  L  K  L  I  M  T  V  I  L  I  M  T  V  I  L  E  L  H  *  R  K  V  E  Y  L  L  K  M  P  R  I  H  A  Q  D  T  L  M  T  I  K  T  V  L  I  H  E  I  L  K  V  P  L  Y  L  H  H  T  L  Q  A  Q  K  *  Q  V  Q  R  P  F  I  L  L  I  S  L :   L  E  H  Q  T  H  L  H  F  I  S  L  R  I  *  T  E  I  S  L  R  Y  S  G  S  F  S  T  Y  I  E  V  K  Y  L  F  I  H  V  I  F  V  A  F  L  S  Q  M  P  L  S  *  K  L  K  L  S  K  Y  D  T  M  A  D  S  L  L  *  H  W  V  M  T  G  D  H  S  A  I  I  K  L  Y  Q  L  L  R  N  C  H  S  K  L  R  V  W  T  R  L  S  T  Y  L  L  L  E  S  Q  C  K  I  I :   V  L  L  L  Q  I  Q  E  I  V  T  T  G  K  L  S  K  L  E  H  F  E  K  D  E  K  :  V  K  T  I  S  L  F  G  E  V  W  G  V  G  P  S  T  A  L  K  L  Y  E  K  G  H  R  T  L  D  D  L  R  N  E  E  S  L  T  R  S  Q  R  I  G  L  K  Y  F  D  D  I  Q  T  R  I  Q  R  H  E  :  V  K  E  M  E  R  L  L  Q  K  V  G  E  E  I  L  P  G  :  V  I  V  V  C  G  G  S  Y  R  R  G  K  A  S  C  G  D  M  D  I  V  I  T  H  P  </first_frame>
            <second_frame>  *  I  S  A  A  *  S  *  W  N  V  F  R  Y  G  C  L  L  C  R  N  R  S  Y  V  P  P  A  T   : D  M  E  E  E  I  V  A  N  G  G  Y  I  *  R  P  V  Y  W  K  C  N  S  C  F  C  K  G  C  K  F  A  S  *  E  I  *  *  R  T  S  D  S  H  Q  S   : *  I  S  L  V  S  V  A  R  G  Q  L  N  T  R  R  K  S  I  *  G  S  V  C  L  I  P  A  I  R  R  R  K  V  P  *  S  *  S  *  *  *  R  S  F  *  *  *  R  S  F  *  S  C  T  K  E  K  S  N  I  C  *  R  C  Q  E  F  M  P  K  T  R  *  *  Q  *  R  P  C  *  S  T  R  Y  *  K  C  L  F  T  C  I  T  L  F  K  P  R  S  D  K  S  R  G  H  S  F  S  *  *  A   : C  W  N  I  R  L  I  F  T  L  *  A  S  G  F  K  P  K  Y  H  S  D  I  R  E  A  S  Q  H  I  *  R  *  N  I  F  S  Y  M  L  F  L  *  L  F  S  H  R  C  L  *  V  K  S  L  N  F  Q  S  M  I  Q  W  L  I  V  Y  Y  S  T  G  *  *  P  E  I  I  Q  L  L  *  S  Y  T  S  Y  *  E  T  A  I  Q  N  *  E  C  G  P  G  *  A  P  T  F  Y  W  K  V  N  A  R  S   : L  F  F  Y  C  R  F  R  R  *  *  P  Q  E  S  C  P  N  W  N  T  L  R  R  M  K  R :   *  K  Q  S  A  Y  L  E  R  F  G  V  L  V  H  L  L  P  *  N  F  M  R  K  D  T  E  L  L  M  T  L  E  M  R  S  H  *  L  V  L  K  G  *  G  *  N  I  L  M  T  S  R  P  G  F  N  G  M  R :   S  K  R  W  N  V  C  Y  R  K  L  E  K  K  F  C  L  V :   *  L  L  C  V  E  D  H  I  D  V  E  R  L  L  A  V  I  W  I  L  L  L  L  I  L </second_frame>
            <third_frame>   E  S  P  P  R  D  P  N  G  M  F  S  G  M  V  V  F  F  V  G  T  G  V  M  S  L  R  L  Q  :  I  W  K  R  K  L  L  Q  M  G  A  I  F  N  D  R  F  T  G  N  V  T  H  V  F  A  K  D  A  N  L  L  L  E  K  F  D  K  E  L  L  I  R  T  K  A  :  K  F  L  S  Y  Q  W  L  E  D  S  L  I  Q  G  E  K  A  S  E  D  L  Y  V  L  S  L  Q  S  G  G  G  K  S  L  S  P  K  A  D  N  D  G  H  S  D  N  D  G  H  S  R  V  A  L  K  K  S  R  I  S  A  E  D  A  K  N  S  C  P  R  H  V  N  D  N  K  D  R  V  D  P  R  D  T  K  S  A  S  L  L  A  S  H  S  S  S  P  E  V  T  S  P  E  A  I  H  S  L  N  K  P  :  V  G  T  S  D  S  S  S  L  Y  K  P  P  D  L  N  R  N  I  T  Q  I  F  G  K  L  L  N  I  Y  R  G  K  I  S  F  H  T  C  Y  F  C  S  F  S  L  T  D  A  F  E  L  K  A  *  T  F  K  V  *  Y  N  G  *  *  F  I  I  A  L  G  D  D  R  R  S  F  S  Y  Y  K  A  I  P  V  I  E  K  L  P  F  K  I  E  S  V  D  Q  V  K  H  L  P  S  I  G  K  S  M  Q  D  H  :  C  S  F  T  A  D  S  G  D  S  D  H  R  K  A  V  Q  I  G  T  L  *  E  G  *  K   : G  K  N  N  Q  L  I  W  R  G  L  G  C  W  S  I  Y  C  P  K  T  L  *  E  R  T  P  N  S  *  *  P  *  K  *  G  V  T  D  S  F  S  K  D  R  V  E  I  F  *  *  H  P  D  Q  D  S  T  A  *   : G  Q  R  D  G  T  F  A  T  E  S  W  R  R  N  F  A  W   : C  D  C  C  V  W  R  I  I  *  T  W  K  G  F  L  R  *  Y  G  Y  C  Y  Y  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42963" stop="42877"/>
                    <exon start="42788" stop="42651"/>
                    <exon start="40236" stop="39901"/>
                    <exon start="39783" stop="39619"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESPPRDPNGMFSGMVVFFVGTGVMSLRLQIWKRKLLQMGAIFNDRFTGNVTHVFAKDANLLLEKFDKELLIRTKAKFLSYQWLEDSLIQGEKASEDLYVLSLQSGGGKSLSPKADNDGHSDNDGHSRVALKKSRISAEDAKNSCPRHVNDNKDRVDPRDTKSASLLASHSSSPEVTSPEAIHSLNKPVGTSDSSSLYKPPDLNRNITQIFGKLLNIYRGKISFHTCYFCSFSLTDAFELKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39578" stop="39448"/>
                    <exon start="39180" stop="39102"/>
                    <exon start="38542" stop="38363"/>
                    <exon start="38276" stop="38223"/>
                    <exon start="38085" stop="38008"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HWVMTGDHSAIIKLYQLLRNCHSKLRVWTRLSTYLLLESQCKIIVLLLQIQEIVTTGKLSKLEHFEKDEKVKTISLFGEVWGVGPSTALKLYEKGHRTLDDLRNEESLTRSQRIGLKYFDDIQTRIQRHEVKEMERLLQKVGEEILPGVIVVCGGSYRRGKASCGDMDIVITHP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="42999" e_stop="42877"/>
            <exon e_start="42788" e_stop="42651"/>
            <exon e_start="40236" e_stop="39901"/>
            <exon e_start="39783" e_stop="39690"/>
            <exon e_start="39578" e_stop="39564"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.377" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42999" e_stop="42877" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42876" i_stop="42789" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42788" e_stop="42651" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.939">
            <gDNA_intron_boundary i_start="42650" i_stop="40237" i_length="2414"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40236" e_stop="39901" e_length="336"/>
          </exon>
          <intron i_serial="3" don_prob="0.891" acc_prob="0.984">
            <gDNA_intron_boundary i_start="39900" i_stop="39784" i_length="117"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39783" e_stop="39690" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.377">
            <gDNA_intron_boundary i_start="39689" i_stop="39579" i_length="111"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39578" e_stop="39564" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42999" stop="42877"/>
              <exon start="42788" stop="42651"/>
              <exon start="40236" stop="39901"/>
              <exon start="39783" stop="39690"/>
              <exon start="39578" stop="39567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42989" stop="42877"/>
              <exon start="42788" stop="42651"/>
              <exon start="40236" stop="39901"/>
              <exon start="39783" stop="39690"/>
              <exon start="39578" stop="39564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42965" stop="42877"/>
              <exon start="42788" stop="42651"/>
              <exon start="40236" stop="39910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269522" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAGAAGAAGACTGTGATGACGCGAAAGAAGGTTGAATCTCCGCCGCGTGATCCTAATGGAATGTTTTCCGGTATGGTTGTCTTCTTTGTCGGAACCGGAGTTATGTCCCTCCGGCTACAG : ATATGGAAGAGGAAATTGTTGCAAATGGGGGCTATATTTAACGACCGGTTTACTGGAAATGTAACTCATGTTTTTGCAAAGGATGCAAATTTGCTTCTTGAGAAATTTGATAAAGAACTTCTGATTCGCACCAAAGCT : AAATTTCTCTCGTATCAGTGGCTAGAGGACAGCTTAATACAAGGAGAAAAAGCATCTGAGGATCTGTATGTCTTATCCCTGCAATCAGGAGGAGGAAAGTCCCTTAGTCCTAAAGCTGATAATGACGGTCATTCTGATAATGACGGTCATTCTAGAGTTGCACTAAAGAAAAGTCGAATATCTGCTGAAGATGCCAAGAATTCATGCCCAAGACACGTTAATGACAATAAAGACCGTGTTGATCCACGAGATACTAAAAGTGCCTCTTTACTTGCATCACACTCTTCAAGCCCAGAAGTGACAAGTCCAGAGGCCATTCATTCTCTTAATAAGCCT : GTTGGAACATCAGACTCATCTTCACTTTATAAGCCTCCGGATTTAAACCGAAATATCACTCAGATATTCGGGAAGCTTCTCAACATATATAGAG : CACTGGGTGATGACC</gDNA_template>
            <first_frame> F  E  K  K  T  V  M  T  R  K  K  V  E  S  P  P  R  D  P  N  G  M  F  S  G  M  V  V  F  F  V  G  T  G  V  M  S  L  R  L  Q  :  I  W  K  R  K  L  L  Q  M  G  A  I  F  N  D  R  F  T  G  N  V  T  H  V  F  A  K  D  A  N  L  L  L  E  K  F  D  K  E  L  L  I  R  T  K  A  :  K  F  L  S  Y  Q  W  L  E  D  S  L  I  Q  G  E  K  A  S  E  D  L  Y  V  L  S  L  Q  S  G  G  G  K  S  L  S  P  K  A  D  N  D  G  H  S  D  N  D  G  H  S  R  V  A  L  K  K  S  R  I  S  A  E  D  A  K  N  S  C  P  R  H  V  N  D  N  K  D  R  V  D  P  R  D  T  K  S  A  S  L  L  A  S  H  S  S  S  P  E  V  T  S  P  E  A  I  H  S  L  N  K  P  :  V  G  T  S  D  S  S  S  L  Y  K  P  P  D  L  N  R  N  I  T  Q  I  F  G  K  L  L  N  I  Y  R   : A  L  G  D  D  </first_frame>
            <second_frame>  L  R  R  R  L  *  *  R  E  R  R  L  N  L  R  R  V  I  L  M  E  C  F  P  V  W  L  S  S  L  S  E  P  E  L  C  P  S  G  Y  R :   Y  G  R  G  N  C  C  K  W  G  L  Y  L  T  T  G  L  L  E  M  *  L  M  F  L  Q  R  M  Q  I  C  F  L  R  N  L  I  K  N  F  *  F  A  P  K  L :   N  F  S  R  I  S  G  *  R  T  A  *  Y  K  E  K  K  H  L  R  I  C  M  S  Y  P  C  N  Q  E  E  E  S  P  L  V  L  K  L  I  M  T  V  I  L  I  M  T  V  I  L  E  L  H  *  R  K  V  E  Y  L  L  K  M  P  R  I  H  A  Q  D  T  L  M  T  I  K  T  V  L  I  H  E  I  L  K  V  P  L  Y  L  H  H  T  L  Q  A  Q  K  *  Q  V  Q  R  P  F  I  L  L  I  S  L :   L  E  H  Q  T  H  L  H  F  I  S  L  R  I  *  T  E  I  S  L  R  Y  S  G  S  F  S  T  Y  I  E  :  H  W  V  M  T </second_frame>
            <third_frame>   *  E  E  D  C  D  D  A  K  E  G  *  I  S  A  A  *  S  *  W  N  V  F  R  Y  G  C  L  L  C  R  N  R  S  Y  V  P  P  A  T   : D  M  E  E  E  I  V  A  N  G  G  Y  I  *  R  P  V  Y  W  K  C  N  S  C  F  C  K  G  C  K  F  A  S  *  E  I  *  *  R  T  S  D  S  H  Q  S   : *  I  S  L  V  S  V  A  R  G  Q  L  N  T  R  R  K  S  I  *  G  S  V  C  L  I  P  A  I  R  R  R  K  V  P  *  S  *  S  *  *  *  R  S  F  *  *  *  R  S  F  *  S  C  T  K  E  K  S  N  I  C  *  R  C  Q  E  F  M  P  K  T  R  *  *  Q  *  R  P  C  *  S  T  R  Y  *  K  C  L  F  T  C  I  T  L  F  K  P  R  S  D  K  S  R  G  H  S  F  S  *  *  A   : C  W  N  I  R  L  I  F  T  L  *  A  S  G  F  K  P  K  Y  H  S  D  I  R  E  A  S  Q  H  I  *  S :   T  G  *  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42999" stop="42877"/>
                    <exon start="42788" stop="42651"/>
                    <exon start="40236" stop="39901"/>
                    <exon start="39783" stop="39690"/>
                    <exon start="39578" stop="39565"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEKKTVMTRKKVESPPRDPNGMFSGMVVFFVGTGVMSLRLQIWKRKLLQMGAIFNDRFTGNVTHVFAKDANLLLEKFDKELLIRTKAKFLSYQWLEDSLIQGEKASEDLYVLSLQSGGGKSLSPKADNDGHSDNDGHSRVALKKSRISAEDAKNSCPRHVNDNKDRVDPRDTKSASLLASHSSSPEVTSPEAIHSLNKPVGTSDSSSLYKPPDLNRNITQIFGKLLNIYRALGDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="44558" PGL_stop="49363"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44558" e_stop="44896"/>
            <exon e_start="46471" e_stop="46755"/>
            <exon e_start="46928" e_stop="47050"/>
            <exon e_start="47134" e_stop="47579"/>
            <exon e_start="47939" e_stop="48260"/>
            <exon e_start="48582" e_stop="48734"/>
            <exon e_start="49092" e_stop="49363"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.987" e_score="0.996"/>
          <exon-intron don_prob="0.335" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.932" e_score="0.962"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.965"/>
          <exon-intron don_prob="0.995" acc_prob="0.954" e_score="0.974"/>
          <exon-only e_score="0.838"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44558" e_stop="44896" e_length="339"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.989">
            <gDNA_intron_boundary i_start="44897" i_stop="46470" i_length="1574"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="46471" e_stop="46755" e_length="285"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.987">
            <gDNA_intron_boundary i_start="46756" i_stop="46927" i_length="172"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46928" e_stop="47050" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="0.335" acc_prob="0.996">
            <gDNA_intron_boundary i_start="47051" i_stop="47133" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="0.962">
            <gDNA_exon_boundary e_start="47134" e_stop="47579" e_length="446"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.932">
            <gDNA_intron_boundary i_start="47580" i_stop="47938" i_length="359"/>
          </intron>
          <exon e_serial="5" e_score="0.965">
            <gDNA_exon_boundary e_start="47939" e_stop="48260" e_length="322"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48261" i_stop="48581" i_length="321"/>
          </intron>
          <exon e_serial="6" e_score="0.974">
            <gDNA_exon_boundary e_start="48582" e_stop="48734" e_length="153"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.954">
            <gDNA_intron_boundary i_start="48735" i_stop="49091" i_length="357"/>
          </intron>
          <exon e_serial="7" e_score="0.838">
            <gDNA_exon_boundary e_start="49092" e_stop="49363" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44558" stop="44896"/>
              <exon start="46471" stop="46755"/>
              <exon start="46928" stop="47050"/>
              <exon start="47134" stop="47206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44571" stop="44896"/>
              <exon start="46471" stop="46632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44573" stop="44896"/>
              <exon start="46471" stop="46755"/>
              <exon start="46928" stop="47050"/>
              <exon start="47134" stop="47164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44581" stop="44896"/>
              <exon start="46471" stop="46672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47040" stop="47050"/>
              <exon start="47134" stop="47579"/>
              <exon start="47939" stop="48143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47040" stop="47050"/>
              <exon start="47134" stop="47540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47974" stop="48260"/>
              <exon start="48582" stop="48734"/>
              <exon start="49092" stop="49363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559709" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48004" stop="48260"/>
              <exon start="48582" stop="48734"/>
              <exon start="49092" stop="49260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412556" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTCTGTAGCTGTTTATAAAGAAGCCCCAAATTCTTAATTTTAGCTAAAAAGGGGTTAAAGCTGATGATTTTACAGCATTCAATTTCAATTTGTAAGCTATGGAGGTCGTCATCTCCACCAAACCTCTATTTGTTTCGACCCTTTGTTGCTTATCAACCACACTGTTGTAGGATTAGAGCATTTGGGTCTGCTGTTTCAGCCTCTAAAGTTGTTGAAACAAATACAAATGAGACATTTTTTGCTGAAGAAAGTGTTTCTTGGACCTCTTTGGGTGTGTCTGAATCATTATCTCGTGCTTTATCTAGCAGTGGCCTTCATAGACCATCTTTAATTCAG : GCAGCTTGTATACCAAGTATACTTTCAGGTGTTGATGTGGTGGTTGCTGCAGAGACTGGTAGCGGCAAGACTCATGGTTACCTAGTGCCACTGATTGATAAGCTATGCCAAATATCTGATAGTTCAGGGGCTATTACTGGCCAGGATGCCAGGAAGCACAATCGTCTTTCGCTTGTTCTTTGTCCTAATGTTATGTTATGTGAGCAAGTGGTTCGAATGGCTAATAGTCTTTGCAATGATAGTGGTACACCACTTCTCAGTATTGCAGCTGTTTGTGGCCGACAG : GTCTGGCCTGTAAAAGAACCAGATGTAATGGTGTCTACTCCGGCAGCACTTCTAAATTATCTCTATTCTATAGACCCAGAAAGGCGAAGACGTTCAGAGTTTATACGAAGTGTTAAATATGTG : GTTTTTGATGAGGCAGATATGCTGCTTTGTGGAAGTTTCCAGAACCAAGTGGTCCGACTTATAAATATGCTTCGTTTTGATGAGAAGCAGTTATCTCGTTCTAAAAATTCTGGAGCTGAGATGTCATCTACTTCAGACTTGGAAGAGTTTAGGGACCTAAAAGCAGATTATGGTGAAGATGCAGATGAAGTTGAAGATGAAGATGAAGATGAGGATGAAGATACTGAAGTTGGCAAAGATAGAGCAAATCTAGAAACAGATACCAAGGGGCTAAAGAGAAGAGATTGGCGAAGAGTGAGAAAGATATATGAGCGGAGCAAGCAGTACATTTTTGTTGCAGCGACCCTTCCTGAAAATGGGAAGAGAACTGCTGGAGGAGTGTTGAAGCGGATGTTTCCTGAAGCTACCTGGGTTAGTGGAAATTATCTTCATCAGCACAGCCCGAG : GTTGGAGCAAAGGTGGATTGAAGTTTCAGTTGACACCCAAGTGGACATTCTCATAAATGCTGTGGAAAATGGGAATTCTATGGCAGATAGTAGTCCTGGAGTGCTCCGAACCATGGTCTTTGCAAATACTGTTGACGCTGTGGAAGCTGTTGCTAATATCTTGACAAGAGTTGGACTTGAATGTTTCCGTTACCATAGTGATAGCTCTTTGGAGGAGCGCACAAAGAATTTACTTGATTTCCAACAGAAAGGTGGTGTTTTTGTGTGCACGGATGCTGCAGCACGTGGTATTGACATTCCAAATGTTTCACATGTTATTCAG : GCAGAGTTTGCCACATCTGCTGTAGATTTCTTGCACAGGGTTGGACGTACAGCTAGAGCAGGCCAACCTGGCCTTGTTACGAGTCTATATTCAGAATCAAACCGTGATCTAGTTGCTGCCATTCGTCATGCAGAAAAAATTGAAGAGCCAGTG : GAGAAAGCATTTAGCAGAAAAAGGAGTTTTCGCAATAAAATCAAGAAAAGAGGCAGAGAAGCTTCACACATGAGGTGAAAAATGTGAATTTTGACTTGGGACTTGGGAGTGAGTTTCTATTTGCATTTGTTTTCTCCACACTGTTTGTATTTTATAGTGTTATTGTAATATACTGTAAAAGAAATTAATTAGTTCAGAGTATTTAATATGAAAGTTCACACATTTTCCCAGTCTCTTAATCATGAAGTGAAGTTGAATATAAAGATCACACA</gDNA_template>
            <first_frame> F  L  C  S  C  L  *  R  S  P  K  F  L  I  L  A  K  K  G  L  K  L  M  I  L  Q  H  S  I  S  I  C  K  L  W  R  S  S  S  P  P  N  L  Y  L  F  R  P  F  V  A  Y  Q  P  H  C  C  R  I  R  A  F  G  S  A  V  S  A  S  K  V  V  E  T  N  T  N  E  T  F  F  A  E  E  S  V  S  W  T  S  L  G  V  S  E  S  L  S  R  A  L  S  S  S  G  L  H  R  P  S  L  I  Q  :  A  A  C  I  P  S  I  L  S  G  V  D  V  V  V  A  A  E  T  G  S  G  K  T  H  G  Y  L  V  P  L  I  D  K  L  C  Q  I  S  D  S  S  G  A  I  T  G  Q  D  A  R  K  H  N  R  L  S  L  V  L  C  P  N  V  M  L  C  E  Q  V  V  R  M  A  N  S  L  C  N  D  S  G  T  P  L  L  S  I  A  A  V  C  G  R  Q  :  V  W  P  V  K  E  P  D  V  M  V  S  T  P  A  A  L  L  N  Y  L  Y  S  I  D  P  E  R  R  R  R  S  E  F  I  R  S  V  K  Y  V  :  V  F  D  E  A  D  M  L  L  C  G  S  F  Q  N  Q  V  V  R  L  I  N  M  L  R  F  D  E  K  Q  L  S  R  S  K  N  S  G  A  E  M  S  S  T  S  D  L  E  E  F  R  D  L  K  A  D  Y  G  E  D  A  D  E  V  E  D  E  D  E  D  E  D  E  D  T  E  V  G  K  D  R  A  N  L  E  T  D  T  K  G  L  K  R  R  D  W  R  R  V  R  K  I  Y  E  R  S  K  Q  Y  I  F  V  A  A  T  L  P  E  N  G  K  R  T  A  G  G  V  L  K  R  M  F  P  E  A  T  W  V  S  G  N  Y  L  H  Q  H  S  P  R :   L  E  Q  R  W  I  E  V  S  V  D  T  Q  V  D  I  L  I  N  A  V  E  N  G  N  S  M  A  D  S  S  P  G  V  L  R  T  M  V  F  A  N  T  V  D  A  V  E  A  V  A  N  I  L  T  R  V  G  L  E  C  F  R  Y  H  S  D  S  S  L  E  E  R  T  K  N  L  L  D  F  Q  Q  K  G  G  V  F  V  C  T  D  A  A  A  R  G  I  D  I  P  N  V  S  H  V  I  Q  :  A  E  F  A  T  S  A  V  D  F  L  H  R  V  G  R  T  A  R  A  G  Q  P  G  L  V  T  S  L  Y  S  E  S  N  R  D  L  V  A  A  I  R  H  A  E  K  I  E  E  P  V  :  E  K  A  F  S  R  K  R  S  F  R  N  K  I  K  K  R  G  R  E  A  S  H  M  R  *  K  M  *  I  L  T  W  D  L  G  V  S  F  Y  L  H  L  F  S  P  H  C  L  Y  F  I  V  L  L  *  Y  T  V  K  E  I  N  *  F  R  V  F  N  M  K  V  H  T  F  S  Q  S  L  N  H  E  V  K  L  N  I  K  I  T   </first_frame>
            <second_frame>  F  S  V  A  V  Y  K  E  A  P  N  S  *  F  *  L  K  R  G  *  S  *  *  F  Y  S  I  Q  F  Q  F  V  S  Y  G  G  R  H  L  H  Q  T  S  I  C  F  D  P  L  L  L  I  N  H  T  V  V  G  L  E  H  L  G  L  L  F  Q  P  L  K  L  L  K  Q  I  Q  M  R  H  F  L  L  K  K  V  F  L  G  P  L  W  V  C  L  N  H  Y  L  V  L  Y  L  A  V  A  F  I  D  H  L  *  F  R :   Q  L  V  Y  Q  V  Y  F  Q  V  L  M  W  W  L  L  Q  R  L  V  A  A  R  L  M  V  T  *  C  H  *  L  I  S  Y  A  K  Y  L  I  V  Q  G  L  L  L  A  R  M  P  G  S  T  I  V  F  R  L  F  F  V  L  M  L  C  Y  V  S  K  W  F  E  W  L  I  V  F  A  M  I  V  V  H  H  F  S  V  L  Q  L  F  V  A  D  R :   S  G  L  *  K  N  Q  M  *  W  C  L  L  R  Q  H  F  *  I  I  S  I  L  *  T  Q  K  G  E  D  V  Q  S  L  Y  E  V  L  N  M  W :   F  L  M  R  Q  I  C  C  F  V  E  V  S  R  T  K  W  S  D  L  *  I  C  F  V  L  M  R  S  S  Y  L  V  L  K  I  L  E  L  R  C  H  L  L  Q  T  W  K  S  L  G  T  *  K  Q  I  M  V  K  M  Q  M  K  L  K  M  K  M  K  M  R  M  K  I  L  K  L  A  K  I  E  Q  I  *  K  Q  I  P  R  G  *  R  E  E  I  G  E  E  *  E  R  Y  M  S  G  A  S  S  T  F  L  L  Q  R  P  F  L  K  M  G  R  E  L  L  E  E  C  *  S  G  C  F  L  K  L  P  G  L  V  E  I  I  F  I  S  T  A  R   : G  W  S  K  G  G  L  K  F  Q  L  T  P  K  W  T  F  S  *  M  L  W  K  M  G  I  L  W  Q  I  V  V  L  E  C  S  E  P  W  S  L  Q  I  L  L  T  L  W  K  L  L  L  I  S  *  Q  E  L  D  L  N  V  S  V  T  I  V  I  A  L  W  R  S  A  Q  R  I  Y  L  I  S  N  R  K  V  V  F  L  C  A  R  M  L  Q  H  V  V  L  T  F  Q  M  F  H  M  L  F  R :   Q  S  L  P  H  L  L  *  I  S  C  T  G  L  D  V  Q  L  E  Q  A  N  L  A  L  L  R  V  Y  I  Q  N  Q  T  V  I  *  L  L  P  F  V  M  Q  K  K  L  K  S  Q  W :   R  K  H  L  A  E  K  G  V  F  A  I  K  S  R  K  E  A  E  K  L  H  T  *  G  E  K  C  E  F  *  L  G  T  W  E  *  V  S  I  C  I  C  F  L  H  T  V  C  I  L  *  C  Y  C  N  I  L  *  K  K  L  I  S  S  E  Y  L  I  *  K  F  T  H  F  P  S  L  L  I  M  K  *  S  *  I  *  R  S  H  </second_frame>
            <third_frame>   S  L  *  L  F  I  K  K  P  Q  I  L  N  F  S  *  K  G  V  K  A  D  D  F  T  A  F  N  F  N  L  *  A  M  E  V  V  I  S  T  K  P  L  F  V  S  T  L  C  C  L  S  T  T  L  L  *  D  *  S  I  W  V  C  C  F  S  L  *  S  C  *  N  K  Y  K  *  D  I  F  C  *  R  K  C  F  L  D  L  F  G  C  V  *  I  I  I  S  C  F  I  *  Q  W  P  S  *  T  I  F  N  S   : G  S  L  Y  T  K  Y  T  F  R  C  *  C  G  G  C  C  R  D  W  *  R  Q  D  S  W  L  P  S  A  T  D  *  *  A  M  P  N  I  *  *  F  R  G  Y  Y  W  P  G  C  Q  E  A  Q  S  S  F  A  C  S  L  S  *  C  Y  V  M  *  A  S  G  S  N  G  *  *  S  L  Q  *  *  W  Y  T  T  S  Q  Y  C  S  C  L  W  P  T   : G  L  A  C  K  R  T  R  C  N  G  V  Y  S  G  S  T  S  K  L  S  L  F  Y  R  P  R  K  A  K  T  F  R  V  Y  T  K  C  *  I  C   : G  F  *  *  G  R  Y  A  A  L  W  K  F  P  E  P  S  G  P  T  Y  K  Y  A  S  F  *  *  E  A  V  I  S  F  *  K  F  W  S  *  D  V  I  Y  F  R  L  G  R  V  *  G  P  K  S  R  L  W  *  R  C  R  *  S  *  R  *  R  *  R  *  G  *  R  Y  *  S  W  Q  R  *  S  K  S  R  N  R  Y  Q  G  A  K  E  K  R  L  A  K  S  E  K  D  I  *  A  E  Q  A  V  H  F  C  C  S  D  P  S  *  K  W  E  E  N  C  W  R  S  V  E  A  D  V  S  *  S  Y  L  G  *  W  K  L  S  S  S  A  Q  P  E  :  V  G  A  K  V  D  *  S  F  S  *  H  P  S  G  H  S  H  K  C  C  G  K  W  E  F  Y  G  R  *  *  S  W  S  A  P  N  H  G  L  C  K  Y  C  *  R  C  G  S  C  C  *  Y  L  D  K  S  W  T  *  M  F  P  L  P  *  *  *  L  F  G  G  A  H  K  E  F  T  *  F  P  T  E  R  W  C  F  C  V  H  G  C  C  S  T  W  Y  *  H  S  K  C  F  T  C  Y  S   : G  R  V  C  H  I  C  C  R  F  L  A  Q  G  W  T  Y  S  *  S  R  P  T  W  P  C  Y  E  S  I  F  R  I  K  P  *  S  S  C  C  H  S  S  C  R  K  N  *  R  A  S   : G  E  S  I  *  Q  K  K  E  F  S  Q  *  N  Q  E  K  R  Q  R  S  F  T  H  E  V  K  N  V  N  F  D  L  G  L  G  S  E  F  L  F  A  F  V  F  S  T  L  F  V  F  Y  S  V  I  V  I  Y  C  K  R  N  *  L  V  Q  S  I  *  Y  E  S  S  H  I  F  P  V  S  *  S  *  S  E  V  E  Y  K  D  H  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44579" stop="44896"/>
                    <exon start="46471" stop="46755"/>
                    <exon start="46928" stop="47050"/>
                    <exon start="47134" stop="47579"/>
                    <exon start="47939" stop="48260"/>
                    <exon start="48582" stop="48734"/>
                    <exon start="49092" stop="49169"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1722</number_coding_nucleotides>
                  <number_encoded_amino_acids>574</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSPKFLILAKKGLKLMILQHSISICKLWRSSSPPNLYLFRPFVAYQPHCCRIRAFGSAVSASKVVETNTNETFFAEESVSWTSLGVSESLSRALSSSGLHRPSLIQAACIPSILSGVDVVVAAETGSGKTHGYLVPLIDKLCQISDSSGAITGQDARKHNRLSLVLCPNVMLCEQVVRMANSLCNDSGTPLLSIAAVCGRQVWPVKEPDVMVSTPAALLNYLYSIDPERRRRSEFIRSVKYVVFDEADMLLCGSFQNQVVRLINMLRFDEKQLSRSKNSGAEMSSTSDLEEFRDLKADYGEDADEVEDEDEDEDEDTEVGKDRANLETDTKGLKRRDWRRVRKIYERSKQYIFVAATLPENGKRTAGGVLKRMFPEATWVSGNYLHQHSPRLEQRWIEVSVDTQVDILINAVENGNSMADSSPGVLRTMVFANTVDAVEAVANILTRVGLECFRYHSDSSLEERTKNLLDFQQKGGVFVCTDAAARGIDIPNVSHVIQAEFATSAVDFLHRVGRTARAGQPGLVTSLYSESNRDLVAAIRHAEKIEEPVEKAFSRKRSFRNKIKKRGREASHMR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="62355" PGL_stop="55825"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62355" e_stop="62242"/>
            <exon e_start="62163" e_stop="61866"/>
            <exon e_start="60707" e_stop="60498"/>
            <exon e_start="60034" e_stop="59976"/>
            <exon e_start="59761" e_stop="59624"/>
            <exon e_start="59409" e_stop="59335"/>
            <exon e_start="59215" e_stop="59132"/>
            <exon e_start="59038" e_stop="58977"/>
            <exon e_start="58767" e_stop="58698"/>
            <exon e_start="58185" e_stop="58110"/>
            <exon e_start="58012" e_stop="57882"/>
            <exon e_start="57609" e_stop="57550"/>
            <exon e_start="57414" e_stop="57340"/>
            <exon e_start="57266" e_stop="57162"/>
            <exon e_start="57084" e_stop="56989"/>
            <exon e_start="56906" e_stop="56826"/>
            <exon e_start="56739" e_stop="56638"/>
            <exon e_start="56543" e_stop="55825"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="0.979"/>
          <exon-intron don_prob="0.891" acc_prob="0.306" e_score="0.977"/>
          <exon-intron don_prob="0.000" acc_prob="0.194" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.677" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.709" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.959" e_score="0.985"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.967"/>
          <exon-intron don_prob="0.979" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.680" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.563" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="62355" e_stop="62242" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="62241" i_stop="62164" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="62163" e_stop="61866" e_length="298"/>
          </exon>
          <intron i_serial="2" don_prob="0.891" acc_prob="0.306">
            <gDNA_intron_boundary i_start="61865" i_stop="60708" i_length="1158"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60707" e_stop="60498" e_length="210"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.194">
            <gDNA_intron_boundary i_start="60497" i_stop="60035" i_length="463"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60034" e_stop="59976" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="59975" i_stop="59762" i_length="214"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59761" e_stop="59624" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.892" acc_prob="0.961">
            <gDNA_intron_boundary i_start="59623" i_stop="59410" i_length="214"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="59409" e_stop="59335" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.677" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59334" i_stop="59216" i_length="119"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="59215" e_stop="59132" e_length="84"/>
          </exon>
          <intron i_serial="7" don_prob="0.709" acc_prob="0.988">
            <gDNA_intron_boundary i_start="59131" i_stop="59039" i_length="93"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="59038" e_stop="58977" e_length="62"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58976" i_stop="58768" i_length="209"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="58767" e_stop="58698" e_length="70"/>
          </exon>
          <intron i_serial="9" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58697" i_stop="58186" i_length="512"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="58185" e_stop="58110" e_length="76"/>
          </exon>
          <intron i_serial="10" don_prob="0.977" acc_prob="0.917">
            <gDNA_intron_boundary i_start="58109" i_stop="58013" i_length="97"/>
          </intron>
          <exon e_serial="11" e_score="0.985">
            <gDNA_exon_boundary e_start="58012" e_stop="57882" e_length="131"/>
          </exon>
          <intron i_serial="11" don_prob="0.992" acc_prob="0.959">
            <gDNA_intron_boundary i_start="57881" i_stop="57610" i_length="272"/>
          </intron>
          <exon e_serial="12" e_score="0.967">
            <gDNA_exon_boundary e_start="57609" e_stop="57550" e_length="60"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57549" i_stop="57415" i_length="135"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="57414" e_stop="57340" e_length="75"/>
          </exon>
          <intron i_serial="13" don_prob="0.979" acc_prob="0.888">
            <gDNA_intron_boundary i_start="57339" i_stop="57267" i_length="73"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="57266" e_stop="57162" e_length="105"/>
          </exon>
          <intron i_serial="14" don_prob="0.975" acc_prob="0.993">
            <gDNA_intron_boundary i_start="57161" i_stop="57085" i_length="77"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="57084" e_stop="56989" e_length="96"/>
          </exon>
          <intron i_serial="15" don_prob="0.976" acc_prob="0.921">
            <gDNA_intron_boundary i_start="56988" i_stop="56907" i_length="82"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="56906" e_stop="56826" e_length="81"/>
          </exon>
          <intron i_serial="16" don_prob="0.680" acc_prob="0.994">
            <gDNA_intron_boundary i_start="56825" i_stop="56740" i_length="86"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="56739" e_stop="56638" e_length="102"/>
          </exon>
          <intron i_serial="17" don_prob="0.999" acc_prob="0.563">
            <gDNA_intron_boundary i_start="56637" i_stop="56544" i_length="94"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="56543" e_stop="55825" e_length="719"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62355" stop="62242"/>
              <exon start="62163" stop="61866"/>
              <exon start="60707" stop="60498"/>
              <exon start="60034" stop="59976"/>
              <exon start="59761" stop="59646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62355" stop="62242"/>
              <exon start="62163" stop="61866"/>
              <exon start="60707" stop="60498"/>
              <exon start="60034" stop="59976"/>
              <exon start="59761" stop="59721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62336" stop="62242"/>
              <exon start="62163" stop="61866"/>
              <exon start="60707" stop="60589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60686" stop="60498"/>
              <exon start="60034" stop="59976"/>
              <exon start="59761" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60566" stop="60498"/>
              <exon start="60034" stop="59976"/>
              <exon start="59761" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59989" stop="59976"/>
              <exon start="59761" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58110"/>
              <exon start="58012" stop="57970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59983" stop="59976"/>
              <exon start="59761" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59755" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58110"/>
              <exon start="58012" stop="57997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59747" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58110"/>
              <exon start="58012" stop="57882"/>
              <exon start="57609" stop="57550"/>
              <exon start="57414" stop="57399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59181" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58110"/>
              <exon start="58012" stop="57998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58115" stop="58110"/>
              <exon start="58012" stop="57882"/>
              <exon start="57609" stop="57550"/>
              <exon start="57414" stop="57340"/>
              <exon start="57266" stop="57191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57558" stop="57550"/>
              <exon start="57414" stop="57340"/>
              <exon start="57266" stop="57162"/>
              <exon start="57084" stop="56989"/>
              <exon start="56906" stop="56826"/>
              <exon start="56739" stop="56638"/>
              <exon start="56543" stop="56426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57206" stop="57162"/>
              <exon start="57084" stop="56989"/>
              <exon start="56906" stop="56826"/>
              <exon start="56739" stop="56638"/>
              <exon start="56543" stop="56214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57197" stop="57162"/>
              <exon start="57084" stop="56989"/>
              <exon start="56906" stop="56826"/>
              <exon start="56739" stop="56638"/>
              <exon start="56543" stop="56180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57178" stop="57162"/>
              <exon start="57084" stop="56989"/>
              <exon start="56906" stop="56826"/>
              <exon start="56739" stop="56638"/>
              <exon start="56543" stop="56219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369944" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56906" stop="56826"/>
              <exon start="56739" stop="56638"/>
              <exon start="56543" stop="56233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56718" stop="56638"/>
              <exon start="56543" stop="56219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258894" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56396" stop="55825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCGCTTTATCTCCTCTTCTGGAACTCTCTCTTCGTTCCTCTCACAGTCTCACTCACTCATTGAGTCTCTCCATGGGCTCATCTTCTACATTCTCTCTGTGTTCTCATCCGACG : GTGAATTTTGAATTTAATGGTAGAAAAGTTGGATACGGATTGCAGAAATCGTTGAGTAGTTCATCCAGTTATTGTTTGATTCATATTTCGCCGATTAGTATAAGTAGTAGAAGAAGAAAATGCGTGCAATTGAGACGTGTAACTGTTAGAGCTGCTTCGTCGTCTAGTACTGGTTCGAGACGTTCGATGAGTACTCGGAGAGTTTACAAGGAATCACAAGCTCAAACGCCAGCATTACCTGTTGACAGAATTGTTTCGTTTGTTGTGCCCGCTGGTGCTTTTGTGGTTATCTCTTTTG : TTTTGTGGAAGCTGGTGGAGAAAATTCTTCTACCCAAACCAGCCAATACTACATCAGAAGAAAGCAAGTCTACTCAGGGATTGAAGTGGTCCATTGCCGCTGGGACAAACTTGTTGCCTGGTTTTGGTGCAAAGATTGAAAGAGAATCCAAGCTGAGGCTTAATGACTTTGCTAAAGAGCTTAGATCTTTCAGCATTGTTGACATGTCAG : GTCGTAACTTTGGAGACGAGGGGCTCTTTTTCCTAGCAGAGAGTTTAGCATATAATCAG : ACAGCTGAGGAAGTAAACTTTGCTGCTAATGGAATAACTGCAGATGGATTGAAGGCCTTTGATGGTATATTGCAATCAAATATTGCTCTAAAGACTCTTAACCTATCTGGAAATGCTATTGGGGATGAAGGAGCCAAG : TGTCTATGTGATATACTGGCAAATAACTCTGGTATTCAAAAGCTCCAGTTGAACAGCACTGGCTTAGGAGATGAG : GGAGCCAAAGCCATCGGTGAAATGCTGAAAAAAAATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCT : GGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAA : CGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGG : GAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTGTCTTTGCGTAAAG : GGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCAAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATTAAAGATGAG : GGAGCTGAAAAGATTGCAGAAGCTTTGAAGGAGAACCGCTCGATAACTAATGTTGATCTT : GGGGGCAATGACATACATGCTAAGGGTATTAGTGCCATAGCAGAAGTTCTGAAAGATAATTCTGTCATTACCTCC : TTAGAACTTGGTTACAACCCCATTGGACCAGAGGGGGCAATGGCATTAGCAGAGGTACTCAAGTTTCATGGAAATGTGAAAGATCTCATGCTTGGTTGGTGTCAG : ATCGGAGCCAAAGGTGCAGAACATTTTGCCGATATGTTGAAGTACAATAGTACCATATCAACTCTAGACTTGCGAGCCAATGGACTTAGAGACGAG : GGTGCAATCTGCCTTGCTCGGAGTTTGAAAGTAGTCAATGAATCTTTGATGACACTCAATTTAGGGTTCAATGAAATTAGA : GATGAAGGAGCTTTTTCTATCGCTCAAGCACTTAAAGCAAATGAAGATGTTAGACTCACATCTTTAAATCTTGCCAGTAACTTCCTCACCAAATTAGGACAG : ACAGCTCTCACAGATGCAAGAGACCATGTATTTGAGATGACTGAGAAGGAGCTTGCTGTTATGTTCTAAAATACCACATTCCTTAGATCAGATTTATTTTTCTCCCTGCTTTCATTCTTGAGGTTGGGGCAGGGCTGCATAGGTGAGTATTTTTTTTTCTTTTACCAATGATATTCCTAAGAGTCCGACCTCAGCTCCCCTTTGTGACTGAATCATTTTGAGCGGGGGGACGGTGGAAATTTTGATAAATAACATTCCGTTTCTGAAACATTAGTGGCAAGTATATAGAGATTACTTCTATTCACCATTTCATATTCATTCTCTAGTTTGAAACTCTTGTGAGTTGTTCTTTTACGCTTATTTTCGTGTTGCAGGACAGAATTAACTTACTTTTAGTTTGTCATTCAACTGTTTTAAAGTAATATGATAATTGTGCTGTGTTCTAAATGCTAATCCATCCCCTCGAAAAAAAATACAGAGGGATATGTTAAATTTATTTGGTCATTTTAGTAGTTTGAAAAAATTTACATGAACTTGTAAAGTTTTCAAAAAACAAAAAAACAGAATTTAGCTGGATAAGTTTGGCCAGCTGGGGTTTTCAGTCTTTAAGAATTCAGTGGATAACTCTTCAAAATTACTTTGAACAGCGTGTTTTCAGGACAGAGCTGATGAATATGAAATGTGTCTAACCTCTCTAAATGACATGTCAAATGAATATG</gDNA_template>
            <first_frame> R  A  L  S  P  L  L  E  L  S  L  R  S  S  H  S  L  T  H  S  L  S  L  S  M  G  S  S  S  T  F  S  L  C  S  H  P  T  :  V  N  F  E  F  N  G  R  K  V  G  Y  G  L  Q  K  S  L  S  S  S  S  S  Y  C  L  I  H  I  S  P  I  S  I  S  S  R  R  R  K  C  V  Q  L  R  R  V  T  V  R  A  A  S  S  S  S  T  G  S  R  R  S  M  S  T  R  R  V  Y  K  E  S  Q  A  Q  T  P  A  L  P  V  D  R  I  V  S  F  V  V  P  A  G  A  F  V  V  I  S  F   : V  L  W  K  L  V  E  K  I  L  L  P  K  P  A  N  T  T  S  E  E  S  K  S  T  Q  G  L  K  W  S  I  A  A  G  T  N  L  L  P  G  F  G  A  K  I  E  R  E  S  K  L  R  L  N  D  F  A  K  E  L  R  S  F  S  I  V  D  M  S   : G  R  N  F  G  D  E  G  L  F  F  L  A  E  S  L  A  Y  N  Q  :  T  A  E  E  V  N  F  A  A  N  G  I  T  A  D  G  L  K  A  F  D  G  I  L  Q  S  N  I  A  L  K  T  L  N  L  S  G  N  A  I  G  D  E  G  A  K  :  C  L  C  D  I  L  A  N  N  S  G  I  Q  K  L  Q  L  N  S  T  G  L  G  D  E  :  G  A  K  A  I  G  E  M  L  K  K  N  S  T  L  R  V  L  E  L  N  N  N  L  I  D  Y  S  :  G  F  S  G  L  A  G  S  L  L  E  N  K  T  L  Q  S  L  H  L  N :   G  N  Y  G  G  A  L  G  A  A  A  L  A  K  G  L  E  S  N  K  S  L  R  :  E  L  Y  L  Q  G  N  S  V  G  D  E  G  V  R  A  L  I  S  G  L  S  L  R  K   : G  K  L  V  L  L  D  L  A  N  N  S  I  T  A  R  G  A  F  H  V  A  E  Y  V  K  K  S  K  S  L  L  W  L  N  L  Y  M  N  D  I  K  D  E  :  G  A  E  K  I  A  E  A  L  K  E  N  R  S  I  T  N  V  D  L  :  G  G  N  D  I  H  A  K  G  I  S  A  I  A  E  V  L  K  D  N  S  V  I  T  S  :  L  E  L  G  Y  N  P  I  G  P  E  G  A  M  A  L  A  E  V  L  K  F  H  G  N  V  K  D  L  M  L  G  W  C  Q  :  I  G  A  K  G  A  E  H  F  A  D  M  L  K  Y  N  S  T  I  S  T  L  D  L  R  A  N  G  L  R  D  E  :  G  A  I  C  L  A  R  S  L  K  V  V  N  E  S  L  M  T  L  N  L  G  F  N  E  I  R  :  D  E  G  A  F  S  I  A  Q  A  L  K  A  N  E  D  V  R  L  T  S  L  N  L  A  S  N  F  L  T  K  L  G  Q  :  T  A  L  T  D  A  R  D  H  V  F  E  M  T  E  K  E  L  A  V  M  F  *  N  T  T  F  L  R  S  D  L  F  F  S  L  L  S  F  L  R  L  G  Q  G  C  I  G  E  Y  F  F  F  F  Y  Q  *  Y  S  *  E  S  D  L  S  S  P  L  *  L  N  H  F  E  R  G  D  G  G  N  F  D  K  *  H  S  V  S  E  T  L  V  A  S  I  *  R  L  L  L  F  T  I  S  Y  S  F  S  S  L  K  L  L  *  V  V  L  L  R  L  F  S  C  C  R  T  E  L  T  Y  F  *  F  V  I  Q  L  F  *  S  N  M  I  I  V  L  C  S  K  C  *  S  I  P  S  K  K  N  T  E  G  Y  V  K  F  I  W  S  F  *  *  F  E  K  I  Y  M  N  L  *  S  F  Q  K  T  K  K  Q  N  L  A  G  *  V  W  P  A  G  V  F  S  L  *  E  F  S  G  *  L  F  K  I  T  L  N  S  V  F  S  G  Q  S  *  *  I  *  N  V  S  N  L  S  K  *  H  V  K  *  I   </first_frame>
            <second_frame>  A  L  Y  L  L  F  W  N  S  L  F  V  P  L  T  V  S  L  T  H  *  V  S  P  W  A  H  L  L  H  S  L  C  V  L  I  R  R :   *  I  L  N  L  M  V  E  K  L  D  T  D  C  R  N  R  *  V  V  H  P  V  I  V  *  F  I  F  R  R  L  V  *  V  V  E  E  E  N  A  C  N  *  D  V  *  L  L  E  L  L  R  R  L  V  L  V  R  D  V  R  *  V  L  G  E  F  T  R  N  H  K  L  K  R  Q  H  Y  L  L  T  E  L  F  R  L  L  C  P  L  V  L  L  W  L  S  L  L  :  F  C  G  S  W  W  R  K  F  F  Y  P  N  Q  P  I  L  H  Q  K  K  A  S  L  L  R  D  *  S  G  P  L  P  L  G  Q  T  C  C  L  V  L  V  Q  R  L  K  E  N  P  S  *  G  L  M  T  L  L  K  S  L  D  L  S  A  L  L  T  C  Q  :  V  V  T  L  E  T  R  G  S  F  S  *  Q  R  V  *  H  I  I  R :   Q  L  R  K  *  T  L  L  L  M  E  *  L  Q  M  D  *  R  P  L  M  V  Y  C  N  Q  I  L  L  *  R  L  L  T  Y  L  E  M  L  L  G  M  K  E  P  S :   V  Y  V  I  Y  W  Q  I  T  L  V  F  K  S  S  S  *  T  A  L  A  *  E  M  R :   E  P  K  P  S  V  K  C  *  K  K  I  Q  P  C  V  F  L  N  *  T  I  I  *  L  T  I  L :   D  F  Q  V  L  L  D  H  F  L  R  I  K  L  Y  N  P  C  I  S   : T  A  I  M  V  V  L  *  G  L  Q  H  W  L  K  A  W  R  A  I  S  P  *  G :   N  F  I  C  R  G  T  L  L  A  M  K  E  Y  G  H  *  S  L  A  C  L  C  V  K  :  G  N  L  S  Y  L  T  L  P  T  I  Q  L  L  Q  E  E  H  F  M  L  P  N  T  S  K  K  A  K  A  Y  C  G  *  I  S  I  *  M  T  L  K  M  R :   E  L  K  R  L  Q  K  L  *  R  R  T  A  R  *  L  M  L  I  L :   G  A  M  T  Y  M  L  R  V  L  V  P  *  Q  K  F  *  K  I  I  L  S  L  P  P :   *  N  L  V  T  T  P  L  D  Q  R  G  Q  W  H  *  Q  R  Y  S  S  F  M  E  M  *  K  I  S  C  L  V  G  V  R :   S  E  P  K  V  Q  N  I  L  P  I  C  *  S  T  I  V  P  Y  Q  L  *  T  C  E  P  M  D  L  E  T  R :   V  Q  S  A  L  L  G  V  *  K  *  S  M  N  L  *  *  H  S  I  *  G  S  M  K  L  E :   M  K  E  L  F  L  S  L  K  H  L  K  Q  M  K  M  L  D  S  H  L  *  I  L  P  V  T  S  S  P  N  *  D  R :   Q  L  S  Q  M  Q  E  T  M  Y  L  R  *  L  R  R  S  L  L  L  C  S  K  I  P  H  S  L  D  Q  I  Y  F  S  P  C  F  H  S  *  G  W  G  R  A  A  *  V  S  I  F  F  S  F  T  N  D  I  P  K  S  P  T  S  A  P  L  C  D  *  I  I  L  S  G  G  T  V  E  I  L  I  N  N  I  P  F  L  K  H  *  W  Q  V  Y  R  D  Y  F  Y  S  P  F  H  I  H  S  L  V  *  N  S  C  E  L  F  F  Y  A  Y  F  R  V  A  G  Q  N  *  L  T  F  S  L  S  F  N  C  F  K  V  I  *  *  L  C  C  V  L  N  A  N  P  S  P  R  K  K  I  Q  R  D  M  L  N  L  F  G  H  F  S  S  L  K  K  F  T  *  T  C  K  V  F  K  K  Q  K  N  R  I  *  L  D  K  F  G  Q  L  G  F  S  V  F  K  N  S  V  D  N  S  S  K  L  L  *  T  A  C  F  Q  D  R  A  D  E  Y  E  M  C  L  T  S  L  N  D  M  S  N  E  Y  </second_frame>
            <third_frame>   R  F  I  S  S  S  G  T  L  S  S  F  L  S  Q  S  H  S  L  I  E  S  L  H  G  L  I  F  Y  I  L  S  V  F  S  S  D   : G  E  F  *  I  *  W  *  K  S  W  I  R  I  A  E  I  V  E  *  F  I  Q  L  L  F  D  S  Y  F  A  D  *  Y  K  *  *  K  K  K  M  R  A  I  E  T  C  N  C  *  S  C  F  V  V  *  Y  W  F  E  T  F  D  E  Y  S  E  S  L  Q  G  I  T  S  S  N  A  S  I  T  C  *  Q  N  C  F  V  C  C  A  R  W  C  F  C  G  Y  L  F  C :   F  V  E  A  G  G  E  N  S  S  T  Q  T  S  Q  Y  Y  I  R  R  K  Q  V  Y  S  G  I  E  V  V  H  C  R  W  D  K  L  V  A  W  F  W  C  K  D  *  K  R  I  Q  A  E  A  *  *  L  C  *  R  A  *  I  F  Q  H  C  *  H  V  R :   S  *  L  W  R  R  G  A  L  F  P  S  R  E  F  S  I  *  S   : D  S  *  G  S  K  L  C  C  *  W  N  N  C  R  W  I  E  G  L  *  W  Y  I  A  I  K  Y  C  S  K  D  S  *  P  I  W  K  C  Y  W  G  *  R  S  Q   : V  S  M  *  Y  T  G  K  *  L  W  Y  S  K  A  P  V  E  Q  H  W  L  R  R  *   : G  S  Q  S  H  R  *  N  A  E  K  K  F  N  L  A  C  S  *  T  K  Q  *  S  D  *  L  F   : W  I  F  R  S  C  W  I  T  S  *  E  *  N  F  T  I  L  A  S  Q  :  R  Q  L  W  W  C  F  R  G  C  S  T  G  *  R  L  G  E  Q  *  V  L  E   : G  T  L  F  A  G  E  L  C  W  R  *  R  S  T  G  I  N  L  W  P  V  F  A  *  R :   E  T  C  L  T  *  P  C  Q  Q  F  N  Y  C  K  R  S  I  S  C  C  R  I  R  Q  K  K  Q  K  L  T  V  V  E  S  L  Y  E  *  H  *  R  *   : G  S  *  K  D  C  R  S  F  E  G  E  P  L  D  N  *  C  *  S   : W  G  Q  *  H  T  C  *  G  Y  *  C  H  S  R  S  S  E  R  *  F  C  H  Y  L   : L  R  T  W  L  Q  P  H  W  T  R  G  G  N  G  I  S  R  G  T  Q  V  S  W  K  C  E  R  S  H  A  W  L  V  S   : D  R  S  Q  R  C  R  T  F  C  R  Y  V  E  V  Q  *  Y  H  I  N  S  R  L  A  S  Q  W  T  *  R  R   : G  C  N  L  P  C  S  E  F  E  S  S  Q  *  I  F  D  D  T  Q  F  R  V  Q  *  N  *   : R  *  R  S  F  F  Y  R  S  S  T  *  S  K  *  R  C  *  T  H  I  F  K  S  C  Q  *  L  P  H  Q  I  R  T   : D  S  S  H  R  C  K  R  P  C  I  *  D  D  *  E  G  A  C  C  Y  V  L  K  Y  H  I  P  *  I  R  F  I  F  L  P  A  F  I  L  E  V  G  A  G  L  H  R  *  V  F  F  F  L  L  P  M  I  F  L  R  V  R  P  Q  L  P  F  V  T  E  S  F  *  A  G  G  R  W  K  F  *  *  I  T  F  R  F  *  N  I  S  G  K  Y  I  E  I  T  S  I  H  H  F  I  F  I  L  *  F  E  T  L  V  S  C  S  F  T  L  I  F  V  L  Q  D  R  I  N  L  L  L  V  C  H  S  T  V  L  K  *  Y  D  N  C  A  V  F  *  M  L  I  H  P  L  E  K  K  Y  R  G  I  C  *  I  Y  L  V  I  L  V  V  *  K  N  L  H  E  L  V  K  F  S  K  N  K  K  T  E  F  S  W  I  S  L  A  S  W  G  F  Q  S  L  R  I  Q  W  I  T  L  Q  N  Y  F  E  Q  R  V  F  R  T  E  L  M  N  M  K  C  V  *  P  L  *  M  T  C  Q  M  N  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62355" stop="62242"/>
                    <exon start="62163" stop="61866"/>
                    <exon start="60707" stop="60498"/>
                    <exon start="60034" stop="59976"/>
                    <exon start="59761" stop="59624"/>
                    <exon start="59409" stop="59335"/>
                    <exon start="59215" stop="59132"/>
                    <exon start="59038" stop="58977"/>
                    <exon start="58767" stop="58698"/>
                    <exon start="58185" stop="58110"/>
                    <exon start="58012" stop="57882"/>
                    <exon start="57609" stop="57550"/>
                    <exon start="57414" stop="57340"/>
                    <exon start="57266" stop="57162"/>
                    <exon start="57084" stop="56989"/>
                    <exon start="56906" stop="56826"/>
                    <exon start="56739" stop="56638"/>
                    <exon start="56543" stop="56475"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1902</number_coding_nucleotides>
                  <number_encoded_amino_acids>634</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RALSPLLELSLRSSHSLTHSLSLSMGSSSTFSLCSHPTVNFEFNGRKVGYGLQKSLSSSSSYCLIHISPISISSRRRKCVQLRRVTVRAASSSSTGSRRSMSTRRVYKESQAQTPALPVDRIVSFVVPAGAFVVISFVLWKLVEKILLPKPANTTSEESKSTQGLKWSIAAGTNLLPGFGAKIERESKLRLNDFAKELRSFSIVDMSGRNFGDEGLFFLAESLAYNQTAEEVNFAANGITADGLKAFDGILQSNIALKTLNLSGNAIGDEGAKCLCDILANNSGIQKLQLNSTGLGDEGAKAIGEMLKKNSTLRVLELNNNLIDYSGFSGLAGSLLENKTLQSLHLNGNYGGALGAAALAKGLESNKSLRELYLQGNSVGDEGVRALISGLSLRKGKLVLLDLANNSITARGAFHVAEYVKKSKSLLWLNLYMNDIKDEGAEKIAEALKENRSITNVDLGGNDIHAKGISAIAEVLKDNSVITSLELGYNPIGPEGAMALAEVLKFHGNVKDLMLGWCQIGAKGAEHFADMLKYNSTISTLDLRANGLRDEGAICLARSLKVVNESLMTLNLGFNEIRDEGAFSIAQALKANEDVRLTSLNLASNFLTKLGQTALTDARDHVFEMTEKELAVMF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62341" e_stop="62242"/>
            <exon e_start="62163" e_stop="61866"/>
            <exon e_start="60714" e_stop="60498"/>
            <exon e_start="60034" e_stop="59976"/>
            <exon e_start="59761" e_stop="59624"/>
            <exon e_start="59409" e_stop="59335"/>
            <exon e_start="59215" e_stop="59132"/>
            <exon e_start="59038" e_stop="58977"/>
            <exon e_start="58767" e_stop="58698"/>
            <exon e_start="58185" e_stop="58110"/>
            <exon e_start="58012" e_stop="57882"/>
            <exon e_start="57609" e_stop="57550"/>
            <exon e_start="57414" e_stop="57340"/>
            <exon e_start="57266" e_stop="57162"/>
            <exon e_start="57084" e_stop="56989"/>
            <exon e_start="56906" e_stop="56826"/>
            <exon e_start="56739" e_stop="56638"/>
            <exon e_start="56543" e_stop="55825"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.194" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.677" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.709" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.959" e_score="0.985"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.967"/>
          <exon-intron don_prob="0.979" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.680" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.563" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62341" e_stop="62242" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="62241" i_stop="62164" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62163" e_stop="61866" e_length="298"/>
          </exon>
          <intron i_serial="2" don_prob="0.891" acc_prob="0.938">
            <gDNA_intron_boundary i_start="61865" i_stop="60715" i_length="1151"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60714" e_stop="60498" e_length="217"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.194">
            <gDNA_intron_boundary i_start="60497" i_stop="60035" i_length="463"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60034" e_stop="59976" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="59975" i_stop="59762" i_length="214"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59761" e_stop="59624" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.892" acc_prob="0.961">
            <gDNA_intron_boundary i_start="59623" i_stop="59410" i_length="214"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="59409" e_stop="59335" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.677" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59334" i_stop="59216" i_length="119"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="59215" e_stop="59132" e_length="84"/>
          </exon>
          <intron i_serial="7" don_prob="0.709" acc_prob="0.988">
            <gDNA_intron_boundary i_start="59131" i_stop="59039" i_length="93"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="59038" e_stop="58977" e_length="62"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58976" i_stop="58768" i_length="209"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="58767" e_stop="58698" e_length="70"/>
          </exon>
          <intron i_serial="9" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58697" i_stop="58186" i_length="512"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="58185" e_stop="58110" e_length="76"/>
          </exon>
          <intron i_serial="10" don_prob="0.977" acc_prob="0.917">
            <gDNA_intron_boundary i_start="58109" i_stop="58013" i_length="97"/>
          </intron>
          <exon e_serial="11" e_score="0.985">
            <gDNA_exon_boundary e_start="58012" e_stop="57882" e_length="131"/>
          </exon>
          <intron i_serial="11" don_prob="0.992" acc_prob="0.959">
            <gDNA_intron_boundary i_start="57881" i_stop="57610" i_length="272"/>
          </intron>
          <exon e_serial="12" e_score="0.967">
            <gDNA_exon_boundary e_start="57609" e_stop="57550" e_length="60"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57549" i_stop="57415" i_length="135"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="57414" e_stop="57340" e_length="75"/>
          </exon>
          <intron i_serial="13" don_prob="0.979" acc_prob="0.888">
            <gDNA_intron_boundary i_start="57339" i_stop="57267" i_length="73"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="57266" e_stop="57162" e_length="105"/>
          </exon>
          <intron i_serial="14" don_prob="0.975" acc_prob="0.993">
            <gDNA_intron_boundary i_start="57161" i_stop="57085" i_length="77"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="57084" e_stop="56989" e_length="96"/>
          </exon>
          <intron i_serial="15" don_prob="0.976" acc_prob="0.921">
            <gDNA_intron_boundary i_start="56988" i_stop="56907" i_length="82"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="56906" e_stop="56826" e_length="81"/>
          </exon>
          <intron i_serial="16" don_prob="0.680" acc_prob="0.994">
            <gDNA_intron_boundary i_start="56825" i_stop="56740" i_length="86"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="56739" e_stop="56638" e_length="102"/>
          </exon>
          <intron i_serial="17" don_prob="0.999" acc_prob="0.563">
            <gDNA_intron_boundary i_start="56637" i_stop="56544" i_length="94"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="56543" e_stop="55825" e_length="719"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62341" stop="62242"/>
              <exon start="62163" stop="61866"/>
              <exon start="60714" stop="60655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60686" stop="60498"/>
              <exon start="60034" stop="59976"/>
              <exon start="59761" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60566" stop="60498"/>
              <exon start="60034" stop="59976"/>
              <exon start="59761" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59989" stop="59976"/>
              <exon start="59761" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58110"/>
              <exon start="58012" stop="57970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59983" stop="59976"/>
              <exon start="59761" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59755" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58110"/>
              <exon start="58012" stop="57997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59747" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58110"/>
              <exon start="58012" stop="57882"/>
              <exon start="57609" stop="57550"/>
              <exon start="57414" stop="57399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59181" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58110"/>
              <exon start="58012" stop="57998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58115" stop="58110"/>
              <exon start="58012" stop="57882"/>
              <exon start="57609" stop="57550"/>
              <exon start="57414" stop="57340"/>
              <exon start="57266" stop="57191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57558" stop="57550"/>
              <exon start="57414" stop="57340"/>
              <exon start="57266" stop="57162"/>
              <exon start="57084" stop="56989"/>
              <exon start="56906" stop="56826"/>
              <exon start="56739" stop="56638"/>
              <exon start="56543" stop="56426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57206" stop="57162"/>
              <exon start="57084" stop="56989"/>
              <exon start="56906" stop="56826"/>
              <exon start="56739" stop="56638"/>
              <exon start="56543" stop="56214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57197" stop="57162"/>
              <exon start="57084" stop="56989"/>
              <exon start="56906" stop="56826"/>
              <exon start="56739" stop="56638"/>
              <exon start="56543" stop="56180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57178" stop="57162"/>
              <exon start="57084" stop="56989"/>
              <exon start="56906" stop="56826"/>
              <exon start="56739" stop="56638"/>
              <exon start="56543" stop="56219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369944" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56906" stop="56826"/>
              <exon start="56739" stop="56638"/>
              <exon start="56543" stop="56233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56718" stop="56638"/>
              <exon start="56543" stop="56219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258894" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56396" stop="55825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTCTGGAACTCTCTCTTCGTTCCTCTCACAGTCTCACTCACTCATTGAGTCTCTCCATGGGCTCATCTTCTACATTCTCTCTGTGTTCTCATCCGACG : GTGAATTTTGAATTTAATGGTAGAAAAGTTGGATACGGATTGCAGAAATCGTTGAGTAGTTCATCCAGTTATTGTTTGATTCATATTTCGCCGATTAGTATAAGTAGTAGAAGAAGAAAATGCGTGCAATTGAGACGTGTAACTGTTAGAGCTGCTTCGTCGTCTAGTACTGGTTCGAGACGTTCGATGAGTACTCGGAGAGTTTACAAGGAATCACAAGCTCAAACGCCAGCATTACCTGTTGACAGAATTGTTTCGTTTGTTGTGCCCGCTGGTGCTTTTGTGGTTATCTCTTTTG : TTGACAGTTTTGTGGAAGCTGGTGGAGAAAATTCTTCTACCCAAACCAGCCAATACTACATCAGAAGAAAGCAAGTCTACTCAGGGATTGAAGTGGTCCATTGCCGCTGGGACAAACTTGTTGCCTGGTTTTGGTGCAAAGATTGAAAGAGAATCCAAGCTGAGGCTTAATGACTTTGCTAAAGAGCTTAGATCTTTCAGCATTGTTGACATGTCAG : GTCGTAACTTTGGAGACGAGGGGCTCTTTTTCCTAGCAGAGAGTTTAGCATATAATCAG : ACAGCTGAGGAAGTAAACTTTGCTGCTAATGGAATAACTGCAGATGGATTGAAGGCCTTTGATGGTATATTGCAATCAAATATTGCTCTAAAGACTCTTAACCTATCTGGAAATGCTATTGGGGATGAAGGAGCCAAG : TGTCTATGTGATATACTGGCAAATAACTCTGGTATTCAAAAGCTCCAGTTGAACAGCACTGGCTTAGGAGATGAG : GGAGCCAAAGCCATCGGTGAAATGCTGAAAAAAAATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCT : GGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAA : CGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGG : GAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTGTCTTTGCGTAAAG : GGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCAAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATTAAAGATGAG : GGAGCTGAAAAGATTGCAGAAGCTTTGAAGGAGAACCGCTCGATAACTAATGTTGATCTT : GGGGGCAATGACATACATGCTAAGGGTATTAGTGCCATAGCAGAAGTTCTGAAAGATAATTCTGTCATTACCTCC : TTAGAACTTGGTTACAACCCCATTGGACCAGAGGGGGCAATGGCATTAGCAGAGGTACTCAAGTTTCATGGAAATGTGAAAGATCTCATGCTTGGTTGGTGTCAG : ATCGGAGCCAAAGGTGCAGAACATTTTGCCGATATGTTGAAGTACAATAGTACCATATCAACTCTAGACTTGCGAGCCAATGGACTTAGAGACGAG : GGTGCAATCTGCCTTGCTCGGAGTTTGAAAGTAGTCAATGAATCTTTGATGACACTCAATTTAGGGTTCAATGAAATTAGA : GATGAAGGAGCTTTTTCTATCGCTCAAGCACTTAAAGCAAATGAAGATGTTAGACTCACATCTTTAAATCTTGCCAGTAACTTCCTCACCAAATTAGGACAG : ACAGCTCTCACAGATGCAAGAGACCATGTATTTGAGATGACTGAGAAGGAGCTTGCTGTTATGTTCTAAAATACCACATTCCTTAGATCAGATTTATTTTTCTCCCTGCTTTCATTCTTGAGGTTGGGGCAGGGCTGCATAGGTGAGTATTTTTTTTTCTTTTACCAATGATATTCCTAAGAGTCCGACCTCAGCTCCCCTTTGTGACTGAATCATTTTGAGCGGGGGGACGGTGGAAATTTTGATAAATAACATTCCGTTTCTGAAACATTAGTGGCAAGTATATAGAGATTACTTCTATTCACCATTTCATATTCATTCTCTAGTTTGAAACTCTTGTGAGTTGTTCTTTTACGCTTATTTTCGTGTTGCAGGACAGAATTAACTTACTTTTAGTTTGTCATTCAACTGTTTTAAAGTAATATGATAATTGTGCTGTGTTCTAAATGCTAATCCATCCCCTCGAAAAAAAATACAGAGGGATATGTTAAATTTATTTGGTCATTTTAGTAGTTTGAAAAAATTTACATGAACTTGTAAAGTTTTCAAAAAACAAAAAAACAGAATTTAGCTGGATAAGTTTGGCCAGCTGGGGTTTTCAGTCTTTAAGAATTCAGTGGATAACTCTTCAAAATTACTTTGAACAGCGTGTTTTCAGGACAGAGCTGATGAATATGAAATGTGTCTAACCTCTCTAAATGACATGTCAAATGAATATG</gDNA_template>
            <first_frame> S  S  G  T  L  S  S  F  L  S  Q  S  H  S  L  I  E  S  L  H  G  L  I  F  Y  I  L  S  V  F  S  S  D   : G  E  F  *  I  *  W  *  K  S  W  I  R  I  A  E  I  V  E  *  F  I  Q  L  L  F  D  S  Y  F  A  D  *  Y  K  *  *  K  K  K  M  R  A  I  E  T  C  N  C  *  S  C  F  V  V  *  Y  W  F  E  T  F  D  E  Y  S  E  S  L  Q  G  I  T  S  S  N  A  S  I  T  C  *  Q  N  C  F  V  C  C  A  R  W  C  F  C  G  Y  L  F  C :   *  Q  F  C  G  S  W  W  R  K  F  F  Y  P  N  Q  P  I  L  H  Q  K  K  A  S  L  L  R  D  *  S  G  P  L  P  L  G  Q  T  C  C  L  V  L  V  Q  R  L  K  E  N  P  S  *  G  L  M  T  L  L  K  S  L  D  L  S  A  L  L  T  C  Q  :  V  V  T  L  E  T  R  G  S  F  S  *  Q  R  V  *  H  I  I  R :   Q  L  R  K  *  T  L  L  L  M  E  *  L  Q  M  D  *  R  P  L  M  V  Y  C  N  Q  I  L  L  *  R  L  L  T  Y  L  E  M  L  L  G  M  K  E  P  S :   V  Y  V  I  Y  W  Q  I  T  L  V  F  K  S  S  S  *  T  A  L  A  *  E  M  R :   E  P  K  P  S  V  K  C  *  K  K  I  Q  P  C  V  F  L  N  *  T  I  I  *  L  T  I  L :   D  F  Q  V  L  L  D  H  F  L  R  I  K  L  Y  N  P  C  I  S   : T  A  I  M  V  V  L  *  G  L  Q  H  W  L  K  A  W  R  A  I  S  P  *  G :   N  F  I  C  R  G  T  L  L  A  M  K  E  Y  G  H  *  S  L  A  C  L  C  V  K  :  G  N  L  S  Y  L  T  L  P  T  I  Q  L  L  Q  E  E  H  F  M  L  P  N  T  S  K  K  A  K  A  Y  C  G  *  I  S  I  *  M  T  L  K  M  R :   E  L  K  R  L  Q  K  L  *  R  R  T  A  R  *  L  M  L  I  L :   G  A  M  T  Y  M  L  R  V  L  V  P  *  Q  K  F  *  K  I  I  L  S  L  P  P :   *  N  L  V  T  T  P  L  D  Q  R  G  Q  W  H  *  Q  R  Y  S  S  F  M  E  M  *  K  I  S  C  L  V  G  V  R :   S  E  P  K  V  Q  N  I  L  P  I  C  *  S  T  I  V  P  Y  Q  L  *  T  C  E  P  M  D  L  E  T  R :   V  Q  S  A  L  L  G  V  *  K  *  S  M  N  L  *  *  H  S  I  *  G  S  M  K  L  E :   M  K  E  L  F  L  S  L  K  H  L  K  Q  M  K  M  L  D  S  H  L  *  I  L  P  V  T  S  S  P  N  *  D  R :   Q  L  S  Q  M  Q  E  T  M  Y  L  R  *  L  R  R  S  L  L  L  C  S  K  I  P  H  S  L  D  Q  I  Y  F  S  P  C  F  H  S  *  G  W  G  R  A  A  *  V  S  I  F  F  S  F  T  N  D  I  P  K  S  P  T  S  A  P  L  C  D  *  I  I  L  S  G  G  T  V  E  I  L  I  N  N  I  P  F  L  K  H  *  W  Q  V  Y  R  D  Y  F  Y  S  P  F  H  I  H  S  L  V  *  N  S  C  E  L  F  F  Y  A  Y  F  R  V  A  G  Q  N  *  L  T  F  S  L  S  F  N  C  F  K  V  I  *  *  L  C  C  V  L  N  A  N  P  S  P  R  K  K  I  Q  R  D  M  L  N  L  F  G  H  F  S  S  L  K  K  F  T  *  T  C  K  V  F  K  K  Q  K  N  R  I  *  L  D  K  F  G  Q  L  G  F  S  V  F  K  N  S  V  D  N  S  S  K  L  L  *  T  A  C  F  Q  D  R  A  D  E  Y  E  M  C  L  T  S  L  N  D  M  S  N  E  Y  </first_frame>
            <second_frame>  L  L  E  L  S  L  R  S  S  H  S  L  T  H  S  L  S  L  S  M  G  S  S  S  T  F  S  L  C  S  H  P  T  :  V  N  F  E  F  N  G  R  K  V  G  Y  G  L  Q  K  S  L  S  S  S  S  S  Y  C  L  I  H  I  S  P  I  S  I  S  S  R  R  R  K  C  V  Q  L  R  R  V  T  V  R  A  A  S  S  S  S  T  G  S  R  R  S  M  S  T  R  R  V  Y  K  E  S  Q  A  Q  T  P  A  L  P  V  D  R  I  V  S  F  V  V  P  A  G  A  F  V  V  I  S  F   : V  D  S  F  V  E  A  G  G  E  N  S  S  T  Q  T  S  Q  Y  Y  I  R  R  K  Q  V  Y  S  G  I  E  V  V  H  C  R  W  D  K  L  V  A  W  F  W  C  K  D  *  K  R  I  Q  A  E  A  *  *  L  C  *  R  A  *  I  F  Q  H  C  *  H  V  R :   S  *  L  W  R  R  G  A  L  F  P  S  R  E  F  S  I  *  S   : D  S  *  G  S  K  L  C  C  *  W  N  N  C  R  W  I  E  G  L  *  W  Y  I  A  I  K  Y  C  S  K  D  S  *  P  I  W  K  C  Y  W  G  *  R  S  Q   : V  S  M  *  Y  T  G  K  *  L  W  Y  S  K  A  P  V  E  Q  H  W  L  R  R  *   : G  S  Q  S  H  R  *  N  A  E  K  K  F  N  L  A  C  S  *  T  K  Q  *  S  D  *  L  F   : W  I  F  R  S  C  W  I  T  S  *  E  *  N  F  T  I  L  A  S  Q  :  R  Q  L  W  W  C  F  R  G  C  S  T  G  *  R  L  G  E  Q  *  V  L  E   : G  T  L  F  A  G  E  L  C  W  R  *  R  S  T  G  I  N  L  W  P  V  F  A  *  R :   E  T  C  L  T  *  P  C  Q  Q  F  N  Y  C  K  R  S  I  S  C  C  R  I  R  Q  K  K  Q  K  L  T  V  V  E  S  L  Y  E  *  H  *  R  *   : G  S  *  K  D  C  R  S  F  E  G  E  P  L  D  N  *  C  *  S   : W  G  Q  *  H  T  C  *  G  Y  *  C  H  S  R  S  S  E  R  *  F  C  H  Y  L   : L  R  T  W  L  Q  P  H  W  T  R  G  G  N  G  I  S  R  G  T  Q  V  S  W  K  C  E  R  S  H  A  W  L  V  S   : D  R  S  Q  R  C  R  T  F  C  R  Y  V  E  V  Q  *  Y  H  I  N  S  R  L  A  S  Q  W  T  *  R  R   : G  C  N  L  P  C  S  E  F  E  S  S  Q  *  I  F  D  D  T  Q  F  R  V  Q  *  N  *   : R  *  R  S  F  F  Y  R  S  S  T  *  S  K  *  R  C  *  T  H  I  F  K  S  C  Q  *  L  P  H  Q  I  R  T   : D  S  S  H  R  C  K  R  P  C  I  *  D  D  *  E  G  A  C  C  Y  V  L  K  Y  H  I  P  *  I  R  F  I  F  L  P  A  F  I  L  E  V  G  A  G  L  H  R  *  V  F  F  F  L  L  P  M  I  F  L  R  V  R  P  Q  L  P  F  V  T  E  S  F  *  A  G  G  R  W  K  F  *  *  I  T  F  R  F  *  N  I  S  G  K  Y  I  E  I  T  S  I  H  H  F  I  F  I  L  *  F  E  T  L  V  S  C  S  F  T  L  I  F  V  L  Q  D  R  I  N  L  L  L  V  C  H  S  T  V  L  K  *  Y  D  N  C  A  V  F  *  M  L  I  H  P  L  E  K  K  Y  R  G  I  C  *  I  Y  L  V  I  L  V  V  *  K  N  L  H  E  L  V  K  F  S  K  N  K  K  T  E  F  S  W  I  S  L  A  S  W  G  F  Q  S  L  R  I  Q  W  I  T  L  Q  N  Y  F  E  Q  R  V  F  R  T  E  L  M  N  M  K  C  V  *  P  L  *  M  T  C  Q  M  N  M </second_frame>
            <third_frame>   F  W  N  S  L  F  V  P  L  T  V  S  L  T  H  *  V  S  P  W  A  H  L  L  H  S  L  C  V  L  I  R  R :   *  I  L  N  L  M  V  E  K  L  D  T  D  C  R  N  R  *  V  V  H  P  V  I  V  *  F  I  F  R  R  L  V  *  V  V  E  E  E  N  A  C  N  *  D  V  *  L  L  E  L  L  R  R  L  V  L  V  R  D  V  R  *  V  L  G  E  F  T  R  N  H  K  L  K  R  Q  H  Y  L  L  T  E  L  F  R  L  L  C  P  L  V  L  L  W  L  S  L  L  :  L  T  V  L  W  K  L  V  E  K  I  L  L  P  K  P  A  N  T  T  S  E  E  S  K  S  T  Q  G  L  K  W  S  I  A  A  G  T  N  L  L  P  G  F  G  A  K  I  E  R  E  S  K  L  R  L  N  D  F  A  K  E  L  R  S  F  S  I  V  D  M  S   : G  R  N  F  G  D  E  G  L  F  F  L  A  E  S  L  A  Y  N  Q  :  T  A  E  E  V  N  F  A  A  N  G  I  T  A  D  G  L  K  A  F  D  G  I  L  Q  S  N  I  A  L  K  T  L  N  L  S  G  N  A  I  G  D  E  G  A  K  :  C  L  C  D  I  L  A  N  N  S  G  I  Q  K  L  Q  L  N  S  T  G  L  G  D  E  :  G  A  K  A  I  G  E  M  L  K  K  N  S  T  L  R  V  L  E  L  N  N  N  L  I  D  Y  S  :  G  F  S  G  L  A  G  S  L  L  E  N  K  T  L  Q  S  L  H  L  N :   G  N  Y  G  G  A  L  G  A  A  A  L  A  K  G  L  E  S  N  K  S  L  R  :  E  L  Y  L  Q  G  N  S  V  G  D  E  G  V  R  A  L  I  S  G  L  S  L  R  K   : G  K  L  V  L  L  D  L  A  N  N  S  I  T  A  R  G  A  F  H  V  A  E  Y  V  K  K  S  K  S  L  L  W  L  N  L  Y  M  N  D  I  K  D  E  :  G  A  E  K  I  A  E  A  L  K  E  N  R  S  I  T  N  V  D  L  :  G  G  N  D  I  H  A  K  G  I  S  A  I  A  E  V  L  K  D  N  S  V  I  T  S  :  L  E  L  G  Y  N  P  I  G  P  E  G  A  M  A  L  A  E  V  L  K  F  H  G  N  V  K  D  L  M  L  G  W  C  Q  :  I  G  A  K  G  A  E  H  F  A  D  M  L  K  Y  N  S  T  I  S  T  L  D  L  R  A  N  G  L  R  D  E  :  G  A  I  C  L  A  R  S  L  K  V  V  N  E  S  L  M  T  L  N  L  G  F  N  E  I  R  :  D  E  G  A  F  S  I  A  Q  A  L  K  A  N  E  D  V  R  L  T  S  L  N  L  A  S  N  F  L  T  K  L  G  Q  :  T  A  L  T  D  A  R  D  H  V  F  E  M  T  E  K  E  L  A  V  M  F  *  N  T  T  F  L  R  S  D  L  F  F  S  L  L  S  F  L  R  L  G  Q  G  C  I  G  E  Y  F  F  F  F  Y  Q  *  Y  S  *  E  S  D  L  S  S  P  L  *  L  N  H  F  E  R  G  D  G  G  N  F  D  K  *  H  S  V  S  E  T  L  V  A  S  I  *  R  L  L  L  F  T  I  S  Y  S  F  S  S  L  K  L  L  *  V  V  L  L  R  L  F  S  C  C  R  T  E  L  T  Y  F  *  F  V  I  Q  L  F  *  S  N  M  I  I  V  L  C  S  K  C  *  S  I  P  S  K  K  N  T  E  G  Y  V  K  F  I  W  S  F  *  *  F  E  K  I  Y  M  N  L  *  S  F  Q  K  T  K  K  Q  N  L  A  G  *  V  W  P  A  G  V  F  S  L  *  E  F  S  G  *  L  F  K  I  T  L  N  S  V  F  S  G  Q  S  *  *  I  *  N  V  S  N  L  S  K  *  H  V  K  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61973" stop="61866"/>
                    <exon start="60714" stop="60498"/>
                    <exon start="60034" stop="59976"/>
                    <exon start="59761" stop="59624"/>
                    <exon start="59409" stop="59335"/>
                    <exon start="59215" stop="59132"/>
                    <exon start="59038" stop="58977"/>
                    <exon start="58767" stop="58698"/>
                    <exon start="58185" stop="58110"/>
                    <exon start="58012" stop="57882"/>
                    <exon start="57609" stop="57550"/>
                    <exon start="57414" stop="57340"/>
                    <exon start="57266" stop="57162"/>
                    <exon start="57084" stop="56989"/>
                    <exon start="56906" stop="56826"/>
                    <exon start="56739" stop="56638"/>
                    <exon start="56543" stop="56475"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1605</number_coding_nucleotides>
                  <number_encoded_amino_acids>535</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLGEFTRNHKLKRQHYLLTELFRLLCPLVLLWLSLLLTVLWKLVEKILLPKPANTTSEESKSTQGLKWSIAAGTNLLPGFGAKIERESKLRLNDFAKELRSFSIVDMSGRNFGDEGLFFLAESLAYNQTAEEVNFAANGITADGLKAFDGILQSNIALKTLNLSGNAIGDEGAKCLCDILANNSGIQKLQLNSTGLGDEGAKAIGEMLKKNSTLRVLELNNNLIDYSGFSGLAGSLLENKTLQSLHLNGNYGGALGAAALAKGLESNKSLRELYLQGNSVGDEGVRALISGLSLRKGKLVLLDLANNSITARGAFHVAEYVKKSKSLLWLNLYMNDIKDEGAEKIAEALKENRSITNVDLGGNDIHAKGISAIAEVLKDNSVITSLELGYNPIGPEGAMALAEVLKFHGNVKDLMLGWCQIGAKGAEHFADMLKYNSTISTLDLRANGLRDEGAICLARSLKVVNESLMTLNLGFNEIRDEGAFSIAQALKANEDVRLTSLNLASNFLTKLGQTALTDARDHVFEMTEKELAVMF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="62355" e_stop="62242"/>
            <exon e_start="62163" e_stop="61866"/>
            <exon e_start="60707" e_stop="60498"/>
            <exon e_start="60034" e_stop="59976"/>
            <exon e_start="59761" e_stop="59624"/>
            <exon e_start="59409" e_stop="59335"/>
            <exon e_start="59215" e_stop="59132"/>
            <exon e_start="59038" e_stop="58977"/>
            <exon e_start="58767" e_stop="58698"/>
            <exon e_start="58185" e_stop="58110"/>
            <exon e_start="58012" e_stop="57882"/>
            <exon e_start="57609" e_stop="57550"/>
            <exon e_start="57414" e_stop="57340"/>
            <exon e_start="57266" e_stop="57162"/>
            <exon e_start="57084" e_stop="56826"/>
            <exon e_start="56739" e_stop="56638"/>
            <exon e_start="56543" e_stop="55825"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="0.979"/>
          <exon-intron don_prob="0.891" acc_prob="0.306" e_score="0.977"/>
          <exon-intron don_prob="0.000" acc_prob="0.194" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.677" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.709" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.959" e_score="0.985"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.967"/>
          <exon-intron don_prob="0.979" acc_prob="0.888" e_score="0.987"/>
          <exon-intron don_prob="0.975" acc_prob="0.993" e_score="0.974"/>
          <exon-intron don_prob="0.680" acc_prob="0.994" e_score="0.908"/>
          <exon-intron don_prob="0.999" acc_prob="0.563" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="62355" e_stop="62242" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="62241" i_stop="62164" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="62163" e_stop="61866" e_length="298"/>
          </exon>
          <intron i_serial="2" don_prob="0.891" acc_prob="0.306">
            <gDNA_intron_boundary i_start="61865" i_stop="60708" i_length="1158"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60707" e_stop="60498" e_length="210"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.194">
            <gDNA_intron_boundary i_start="60497" i_stop="60035" i_length="463"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60034" e_stop="59976" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="59975" i_stop="59762" i_length="214"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59761" e_stop="59624" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.892" acc_prob="0.961">
            <gDNA_intron_boundary i_start="59623" i_stop="59410" i_length="214"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="59409" e_stop="59335" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.677" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59334" i_stop="59216" i_length="119"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="59215" e_stop="59132" e_length="84"/>
          </exon>
          <intron i_serial="7" don_prob="0.709" acc_prob="0.988">
            <gDNA_intron_boundary i_start="59131" i_stop="59039" i_length="93"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="59038" e_stop="58977" e_length="62"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58976" i_stop="58768" i_length="209"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="58767" e_stop="58698" e_length="70"/>
          </exon>
          <intron i_serial="9" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58697" i_stop="58186" i_length="512"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="58185" e_stop="58110" e_length="76"/>
          </exon>
          <intron i_serial="10" don_prob="0.977" acc_prob="0.917">
            <gDNA_intron_boundary i_start="58109" i_stop="58013" i_length="97"/>
          </intron>
          <exon e_serial="11" e_score="0.985">
            <gDNA_exon_boundary e_start="58012" e_stop="57882" e_length="131"/>
          </exon>
          <intron i_serial="11" don_prob="0.992" acc_prob="0.959">
            <gDNA_intron_boundary i_start="57881" i_stop="57610" i_length="272"/>
          </intron>
          <exon e_serial="12" e_score="0.967">
            <gDNA_exon_boundary e_start="57609" e_stop="57550" e_length="60"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57549" i_stop="57415" i_length="135"/>
          </intron>
          <exon e_serial="13" e_score="0.987">
            <gDNA_exon_boundary e_start="57414" e_stop="57340" e_length="75"/>
          </exon>
          <intron i_serial="13" don_prob="0.979" acc_prob="0.888">
            <gDNA_intron_boundary i_start="57339" i_stop="57267" i_length="73"/>
          </intron>
          <exon e_serial="14" e_score="0.974">
            <gDNA_exon_boundary e_start="57266" e_stop="57162" e_length="105"/>
          </exon>
          <intron i_serial="14" don_prob="0.975" acc_prob="0.993">
            <gDNA_intron_boundary i_start="57161" i_stop="57085" i_length="77"/>
          </intron>
          <exon e_serial="15" e_score="0.908">
            <gDNA_exon_boundary e_start="57084" e_stop="56826" e_length="259"/>
          </exon>
          <intron i_serial="15" don_prob="0.680" acc_prob="0.994">
            <gDNA_intron_boundary i_start="56825" i_stop="56740" i_length="86"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="56739" e_stop="56638" e_length="102"/>
          </exon>
          <intron i_serial="16" don_prob="0.999" acc_prob="0.563">
            <gDNA_intron_boundary i_start="56637" i_stop="56544" i_length="94"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="56543" e_stop="55825" e_length="719"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62355" stop="62242"/>
              <exon start="62163" stop="61866"/>
              <exon start="60707" stop="60498"/>
              <exon start="60034" stop="59976"/>
              <exon start="59761" stop="59646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62355" stop="62242"/>
              <exon start="62163" stop="61866"/>
              <exon start="60707" stop="60498"/>
              <exon start="60034" stop="59976"/>
              <exon start="59761" stop="59721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62336" stop="62242"/>
              <exon start="62163" stop="61866"/>
              <exon start="60707" stop="60589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60686" stop="60498"/>
              <exon start="60034" stop="59976"/>
              <exon start="59761" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60566" stop="60498"/>
              <exon start="60034" stop="59976"/>
              <exon start="59761" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59989" stop="59976"/>
              <exon start="59761" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58110"/>
              <exon start="58012" stop="57970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59983" stop="59976"/>
              <exon start="59761" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59755" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58110"/>
              <exon start="58012" stop="57997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59747" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58110"/>
              <exon start="58012" stop="57882"/>
              <exon start="57609" stop="57550"/>
              <exon start="57414" stop="57399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59181" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58110"/>
              <exon start="58012" stop="57998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59153" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58110"/>
              <exon start="58012" stop="57882"/>
              <exon start="57609" stop="57550"/>
              <exon start="57414" stop="57340"/>
              <exon start="57266" stop="57162"/>
              <exon start="57084" stop="56846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58115" stop="58110"/>
              <exon start="58012" stop="57882"/>
              <exon start="57609" stop="57550"/>
              <exon start="57414" stop="57340"/>
              <exon start="57266" stop="57191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56906" stop="56826"/>
              <exon start="56739" stop="56638"/>
              <exon start="56543" stop="56233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56718" stop="56638"/>
              <exon start="56543" stop="56219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258894" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56396" stop="55825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCGCTTTATCTCCTCTTCTGGAACTCTCTCTTCGTTCCTCTCACAGTCTCACTCACTCATTGAGTCTCTCCATGGGCTCATCTTCTACATTCTCTCTGTGTTCTCATCCGACG : GTGAATTTTGAATTTAATGGTAGAAAAGTTGGATACGGATTGCAGAAATCGTTGAGTAGTTCATCCAGTTATTGTTTGATTCATATTTCGCCGATTAGTATAAGTAGTAGAAGAAGAAAATGCGTGCAATTGAGACGTGTAACTGTTAGAGCTGCTTCGTCGTCTAGTACTGGTTCGAGACGTTCGATGAGTACTCGGAGAGTTTACAAGGAATCACAAGCTCAAACGCCAGCATTACCTGTTGACAGAATTGTTTCGTTTGTTGTGCCCGCTGGTGCTTTTGTGGTTATCTCTTTTG : TTTTGTGGAAGCTGGTGGAGAAAATTCTTCTACCCAAACCAGCCAATACTACATCAGAAGAAAGCAAGTCTACTCAGGGATTGAAGTGGTCCATTGCCGCTGGGACAAACTTGTTGCCTGGTTTTGGTGCAAAGATTGAAAGAGAATCCAAGCTGAGGCTTAATGACTTTGCTAAAGAGCTTAGATCTTTCAGCATTGTTGACATGTCAG : GTCGTAACTTTGGAGACGAGGGGCTCTTTTTCCTAGCAGAGAGTTTAGCATATAATCAG : ACAGCTGAGGAAGTAAACTTTGCTGCTAATGGAATAACTGCAGATGGATTGAAGGCCTTTGATGGTATATTGCAATCAAATATTGCTCTAAAGACTCTTAACCTATCTGGAAATGCTATTGGGGATGAAGGAGCCAAG : TGTCTATGTGATATACTGGCAAATAACTCTGGTATTCAAAAGCTCCAGTTGAACAGCACTGGCTTAGGAGATGAG : GGAGCCAAAGCCATCGGTGAAATGCTGAAAAAAAATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCT : GGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAA : CGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGG : GAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTGTCTTTGCGTAAAG : GGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCAAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATTAAAGATGAG : GGAGCTGAAAAGATTGCAGAAGCTTTGAAGGAGAACCGCTCGATAACTAATGTTGATCTT : GGGGGCAATGACATACATGCTAAGGGTATTAGTGCCATAGCAGAAGTTCTGAAAGATAATTCTGTCATTACCTCC : TTAGAACTTGGTTACAACCCCATTGGACCAGAGGGGGCAATGGCATTAGCAGAGGTACTCAAGTTTCATGGAAATGTGAAAGATCTCATGCTTGGTTGGTGTCAG : ATCGGAGCCAAAGGTGCAGAACATTTTGCCGATATGTTGAAGTACAATAGTACCATATCAACTCTAGACTTGCGAGCCAATGGACTTAGAGACGAGGTTCATTCAAAGTTTATAGTTCTCCTATTCTGCCACAATCTTTAATTTCCCTCAAAAGTACATGAACTATATCCCTTTTCAGGGTGCAATCTGCCTTGCTCGGAGTTTGAAAGTAGTCAATGAATCTTTGATGACACTCAATTTAGGGTTCAATGAAATTAGA : GATGAAGGAGCTTTTTCTATCGCTCAAGCACTTAAAGCAAATGAAGATGTTAGACTCACATCTTTAAATCTTGCCAGTAACTTCCTCACCAAATTAGGACAG : ACAGCTCTCACAGATGCAAGAGACCATGTATTTGAGATGACTGAGAAGGAGCTTGCTGTTATGTTCTAAAATACCACATTCCTTAGATCAGATTTATTTTTCTCCCTGCTTTCATTCTTGAGGTTGGGGCAGGGCTGCATAGGTGAGTATTTTTTTTTCTTTTACCAATGATATTCCTAAGAGTCCGACCTCAGCTCCCCTTTGTGACTGAATCATTTTGAGCGGGGGGACGGTGGAAATTTTGATAAATAACATTCCGTTTCTGAAACATTAGTGGCAAGTATATAGAGATTACTTCTATTCACCATTTCATATTCATTCTCTAGTTTGAAACTCTTGTGAGTTGTTCTTTTACGCTTATTTTCGTGTTGCAGGACAGAATTAACTTACTTTTAGTTTGTCATTCAACTGTTTTAAAGTAATATGATAATTGTGCTGTGTTCTAAATGCTAATCCATCCCCTCGAAAAAAAATACAGAGGGATATGTTAAATTTATTTGGTCATTTTAGTAGTTTGAAAAAATTTACATGAACTTGTAAAGTTTTCAAAAAACAAAAAAACAGAATTTAGCTGGATAAGTTTGGCCAGCTGGGGTTTTCAGTCTTTAAGAATTCAGTGGATAACTCTTCAAAATTACTTTGAACAGCGTGTTTTCAGGACAGAGCTGATGAATATGAAATGTGTCTAACCTCTCTAAATGACATGTCAAATGAATATG</gDNA_template>
            <first_frame> R  A  L  S  P  L  L  E  L  S  L  R  S  S  H  S  L  T  H  S  L  S  L  S  M  G  S  S  S  T  F  S  L  C  S  H  P  T  :  V  N  F  E  F  N  G  R  K  V  G  Y  G  L  Q  K  S  L  S  S  S  S  S  Y  C  L  I  H  I  S  P  I  S  I  S  S  R  R  R  K  C  V  Q  L  R  R  V  T  V  R  A  A  S  S  S  S  T  G  S  R  R  S  M  S  T  R  R  V  Y  K  E  S  Q  A  Q  T  P  A  L  P  V  D  R  I  V  S  F  V  V  P  A  G  A  F  V  V  I  S  F   : V  L  W  K  L  V  E  K  I  L  L  P  K  P  A  N  T  T  S  E  E  S  K  S  T  Q  G  L  K  W  S  I  A  A  G  T  N  L  L  P  G  F  G  A  K  I  E  R  E  S  K  L  R  L  N  D  F  A  K  E  L  R  S  F  S  I  V  D  M  S   : G  R  N  F  G  D  E  G  L  F  F  L  A  E  S  L  A  Y  N  Q  :  T  A  E  E  V  N  F  A  A  N  G  I  T  A  D  G  L  K  A  F  D  G  I  L  Q  S  N  I  A  L  K  T  L  N  L  S  G  N  A  I  G  D  E  G  A  K  :  C  L  C  D  I  L  A  N  N  S  G  I  Q  K  L  Q  L  N  S  T  G  L  G  D  E  :  G  A  K  A  I  G  E  M  L  K  K  N  S  T  L  R  V  L  E  L  N  N  N  L  I  D  Y  S  :  G  F  S  G  L  A  G  S  L  L  E  N  K  T  L  Q  S  L  H  L  N :   G  N  Y  G  G  A  L  G  A  A  A  L  A  K  G  L  E  S  N  K  S  L  R  :  E  L  Y  L  Q  G  N  S  V  G  D  E  G  V  R  A  L  I  S  G  L  S  L  R  K   : G  K  L  V  L  L  D  L  A  N  N  S  I  T  A  R  G  A  F  H  V  A  E  Y  V  K  K  S  K  S  L  L  W  L  N  L  Y  M  N  D  I  K  D  E  :  G  A  E  K  I  A  E  A  L  K  E  N  R  S  I  T  N  V  D  L  :  G  G  N  D  I  H  A  K  G  I  S  A  I  A  E  V  L  K  D  N  S  V  I  T  S  :  L  E  L  G  Y  N  P  I  G  P  E  G  A  M  A  L  A  E  V  L  K  F  H  G  N  V  K  D  L  M  L  G  W  C  Q  :  I  G  A  K  G  A  E  H  F  A  D  M  L  K  Y  N  S  T  I  S  T  L  D  L  R  A  N  G  L  R  D  E  V  H  S  K  F  I  V  L  L  F  C  H  N  L  *  F  P  S  K  V  H  E  L  Y  P  F  S  G  C  N  L  P  C  S  E  F  E  S  S  Q  *  I  F  D  D  T  Q  F  R  V  Q  *  N  *   : R  *  R  S  F  F  Y  R  S  S  T  *  S  K  *  R  C  *  T  H  I  F  K  S  C  Q  *  L  P  H  Q  I  R  T   : D  S  S  H  R  C  K  R  P  C  I  *  D  D  *  E  G  A  C  C  Y  V  L  K  Y  H  I  P  *  I  R  F  I  F  L  P  A  F  I  L  E  V  G  A  G  L  H  R  *  V  F  F  F  L  L  P  M  I  F  L  R  V  R  P  Q  L  P  F  V  T  E  S  F  *  A  G  G  R  W  K  F  *  *  I  T  F  R  F  *  N  I  S  G  K  Y  I  E  I  T  S  I  H  H  F  I  F  I  L  *  F  E  T  L  V  S  C  S  F  T  L  I  F  V  L  Q  D  R  I  N  L  L  L  V  C  H  S  T  V  L  K  *  Y  D  N  C  A  V  F  *  M  L  I  H  P  L  E  K  K  Y  R  G  I  C  *  I  Y  L  V  I  L  V  V  *  K  N  L  H  E  L  V  K  F  S  K  N  K  K  T  E  F  S  W  I  S  L  A  S  W  G  F  Q  S  L  R  I  Q  W  I  T  L  Q  N  Y  F  E  Q  R  V  F  R  T  E  L  M  N  M  K  C  V  *  P  L  *  M  T  C  Q  M  N  M </first_frame>
            <second_frame>  A  L  Y  L  L  F  W  N  S  L  F  V  P  L  T  V  S  L  T  H  *  V  S  P  W  A  H  L  L  H  S  L  C  V  L  I  R  R :   *  I  L  N  L  M  V  E  K  L  D  T  D  C  R  N  R  *  V  V  H  P  V  I  V  *  F  I  F  R  R  L  V  *  V  V  E  E  E  N  A  C  N  *  D  V  *  L  L  E  L  L  R  R  L  V  L  V  R  D  V  R  *  V  L  G  E  F  T  R  N  H  K  L  K  R  Q  H  Y  L  L  T  E  L  F  R  L  L  C  P  L  V  L  L  W  L  S  L  L  :  F  C  G  S  W  W  R  K  F  F  Y  P  N  Q  P  I  L  H  Q  K  K  A  S  L  L  R  D  *  S  G  P  L  P  L  G  Q  T  C  C  L  V  L  V  Q  R  L  K  E  N  P  S  *  G  L  M  T  L  L  K  S  L  D  L  S  A  L  L  T  C  Q  :  V  V  T  L  E  T  R  G  S  F  S  *  Q  R  V  *  H  I  I  R :   Q  L  R  K  *  T  L  L  L  M  E  *  L  Q  M  D  *  R  P  L  M  V  Y  C  N  Q  I  L  L  *  R  L  L  T  Y  L  E  M  L  L  G  M  K  E  P  S :   V  Y  V  I  Y  W  Q  I  T  L  V  F  K  S  S  S  *  T  A  L  A  *  E  M  R :   E  P  K  P  S  V  K  C  *  K  K  I  Q  P  C  V  F  L  N  *  T  I  I  *  L  T  I  L :   D  F  Q  V  L  L  D  H  F  L  R  I  K  L  Y  N  P  C  I  S   : T  A  I  M  V  V  L  *  G  L  Q  H  W  L  K  A  W  R  A  I  S  P  *  G :   N  F  I  C  R  G  T  L  L  A  M  K  E  Y  G  H  *  S  L  A  C  L  C  V  K  :  G  N  L  S  Y  L  T  L  P  T  I  Q  L  L  Q  E  E  H  F  M  L  P  N  T  S  K  K  A  K  A  Y  C  G  *  I  S  I  *  M  T  L  K  M  R :   E  L  K  R  L  Q  K  L  *  R  R  T  A  R  *  L  M  L  I  L :   G  A  M  T  Y  M  L  R  V  L  V  P  *  Q  K  F  *  K  I  I  L  S  L  P  P :   *  N  L  V  T  T  P  L  D  Q  R  G  Q  W  H  *  Q  R  Y  S  S  F  M  E  M  *  K  I  S  C  L  V  G  V  R :   S  E  P  K  V  Q  N  I  L  P  I  C  *  S  T  I  V  P  Y  Q  L  *  T  C  E  P  M  D  L  E  T  R  F  I  Q  S  L  *  F  S  Y  S  A  T  I  F  N  F  P  Q  K  Y  M  N  Y  I  P  F  Q  G  A  I  C  L  A  R  S  L  K  V  V  N  E  S  L  M  T  L  N  L  G  F  N  E  I  R  :  D  E  G  A  F  S  I  A  Q  A  L  K  A  N  E  D  V  R  L  T  S  L  N  L  A  S  N  F  L  T  K  L  G  Q  :  T  A  L  T  D  A  R  D  H  V  F  E  M  T  E  K  E  L  A  V  M  F  *  N  T  T  F  L  R  S  D  L  F  F  S  L  L  S  F  L  R  L  G  Q  G  C  I  G  E  Y  F  F  F  F  Y  Q  *  Y  S  *  E  S  D  L  S  S  P  L  *  L  N  H  F  E  R  G  D  G  G  N  F  D  K  *  H  S  V  S  E  T  L  V  A  S  I  *  R  L  L  L  F  T  I  S  Y  S  F  S  S  L  K  L  L  *  V  V  L  L  R  L  F  S  C  C  R  T  E  L  T  Y  F  *  F  V  I  Q  L  F  *  S  N  M  I  I  V  L  C  S  K  C  *  S  I  P  S  K  K  N  T  E  G  Y  V  K  F  I  W  S  F  *  *  F  E  K  I  Y  M  N  L  *  S  F  Q  K  T  K  K  Q  N  L  A  G  *  V  W  P  A  G  V  F  S  L  *  E  F  S  G  *  L  F  K  I  T  L  N  S  V  F  S  G  Q  S  *  *  I  *  N  V  S  N  L  S  K  *  H  V  K  *  I   </second_frame>
            <third_frame>   R  F  I  S  S  S  G  T  L  S  S  F  L  S  Q  S  H  S  L  I  E  S  L  H  G  L  I  F  Y  I  L  S  V  F  S  S  D   : G  E  F  *  I  *  W  *  K  S  W  I  R  I  A  E  I  V  E  *  F  I  Q  L  L  F  D  S  Y  F  A  D  *  Y  K  *  *  K  K  K  M  R  A  I  E  T  C  N  C  *  S  C  F  V  V  *  Y  W  F  E  T  F  D  E  Y  S  E  S  L  Q  G  I  T  S  S  N  A  S  I  T  C  *  Q  N  C  F  V  C  C  A  R  W  C  F  C  G  Y  L  F  C :   F  V  E  A  G  G  E  N  S  S  T  Q  T  S  Q  Y  Y  I  R  R  K  Q  V  Y  S  G  I  E  V  V  H  C  R  W  D  K  L  V  A  W  F  W  C  K  D  *  K  R  I  Q  A  E  A  *  *  L  C  *  R  A  *  I  F  Q  H  C  *  H  V  R :   S  *  L  W  R  R  G  A  L  F  P  S  R  E  F  S  I  *  S   : D  S  *  G  S  K  L  C  C  *  W  N  N  C  R  W  I  E  G  L  *  W  Y  I  A  I  K  Y  C  S  K  D  S  *  P  I  W  K  C  Y  W  G  *  R  S  Q   : V  S  M  *  Y  T  G  K  *  L  W  Y  S  K  A  P  V  E  Q  H  W  L  R  R  *   : G  S  Q  S  H  R  *  N  A  E  K  K  F  N  L  A  C  S  *  T  K  Q  *  S  D  *  L  F   : W  I  F  R  S  C  W  I  T  S  *  E  *  N  F  T  I  L  A  S  Q  :  R  Q  L  W  W  C  F  R  G  C  S  T  G  *  R  L  G  E  Q  *  V  L  E   : G  T  L  F  A  G  E  L  C  W  R  *  R  S  T  G  I  N  L  W  P  V  F  A  *  R :   E  T  C  L  T  *  P  C  Q  Q  F  N  Y  C  K  R  S  I  S  C  C  R  I  R  Q  K  K  Q  K  L  T  V  V  E  S  L  Y  E  *  H  *  R  *   : G  S  *  K  D  C  R  S  F  E  G  E  P  L  D  N  *  C  *  S   : W  G  Q  *  H  T  C  *  G  Y  *  C  H  S  R  S  S  E  R  *  F  C  H  Y  L   : L  R  T  W  L  Q  P  H  W  T  R  G  G  N  G  I  S  R  G  T  Q  V  S  W  K  C  E  R  S  H  A  W  L  V  S   : D  R  S  Q  R  C  R  T  F  C  R  Y  V  E  V  Q  *  Y  H  I  N  S  R  L  A  S  Q  W  T  *  R  R  G  S  F  K  V  Y  S  S  P  I  L  P  Q  S  L  I  S  L  K  S  T  *  T  I  S  L  F  R  V  Q  S  A  L  L  G  V  *  K  *  S  M  N  L  *  *  H  S  I  *  G  S  M  K  L  E :   M  K  E  L  F  L  S  L  K  H  L  K  Q  M  K  M  L  D  S  H  L  *  I  L  P  V  T  S  S  P  N  *  D  R :   Q  L  S  Q  M  Q  E  T  M  Y  L  R  *  L  R  R  S  L  L  L  C  S  K  I  P  H  S  L  D  Q  I  Y  F  S  P  C  F  H  S  *  G  W  G  R  A  A  *  V  S  I  F  F  S  F  T  N  D  I  P  K  S  P  T  S  A  P  L  C  D  *  I  I  L  S  G  G  T  V  E  I  L  I  N  N  I  P  F  L  K  H  *  W  Q  V  Y  R  D  Y  F  Y  S  P  F  H  I  H  S  L  V  *  N  S  C  E  L  F  F  Y  A  Y  F  R  V  A  G  Q  N  *  L  T  F  S  L  S  F  N  C  F  K  V  I  *  *  L  C  C  V  L  N  A  N  P  S  P  R  K  K  I  Q  R  D  M  L  N  L  F  G  H  F  S  S  L  K  K  F  T  *  T  C  K  V  F  K  K  Q  K  N  R  I  *  L  D  K  F  G  Q  L  G  F  S  V  F  K  N  S  V  D  N  S  S  K  L  L  *  T  A  C  F  Q  D  R  A  D  E  Y  E  M  C  L  T  S  L  N  D  M  S  N  E  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62355" stop="62242"/>
                    <exon start="62163" stop="61866"/>
                    <exon start="60707" stop="60498"/>
                    <exon start="60034" stop="59976"/>
                    <exon start="59761" stop="59624"/>
                    <exon start="59409" stop="59335"/>
                    <exon start="59215" stop="59132"/>
                    <exon start="59038" stop="58977"/>
                    <exon start="58767" stop="58698"/>
                    <exon start="58185" stop="58110"/>
                    <exon start="58012" stop="57882"/>
                    <exon start="57609" stop="57550"/>
                    <exon start="57414" stop="57340"/>
                    <exon start="57266" stop="57162"/>
                    <exon start="57084" stop="56944"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1695</number_coding_nucleotides>
                  <number_encoded_amino_acids>565</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RALSPLLELSLRSSHSLTHSLSLSMGSSSTFSLCSHPTVNFEFNGRKVGYGLQKSLSSSSSYCLIHISPISISSRRRKCVQLRRVTVRAASSSSTGSRRSMSTRRVYKESQAQTPALPVDRIVSFVVPAGAFVVISFVLWKLVEKILLPKPANTTSEESKSTQGLKWSIAAGTNLLPGFGAKIERESKLRLNDFAKELRSFSIVDMSGRNFGDEGLFFLAESLAYNQTAEEVNFAANGITADGLKAFDGILQSNIALKTLNLSGNAIGDEGAKCLCDILANNSGIQKLQLNSTGLGDEGAKAIGEMLKKNSTLRVLELNNNLIDYSGFSGLAGSLLENKTLQSLHLNGNYGGALGAAALAKGLESNKSLRELYLQGNSVGDEGVRALISGLSLRKGKLVLLDLANNSITARGAFHVAEYVKKSKSLLWLNLYMNDIKDEGAEKIAEALKENRSITNVDLGGNDIHAKGISAIAEVLKDNSVITSLELGYNPIGPEGAMALAEVLKFHGNVKDLMLGWCQIGAKGAEHFADMLKYNSTISTLDLRANGLRDEVHSKFIVLLFCHNL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56969" stop="56826"/>
                    <exon start="56739" stop="56638"/>
                    <exon start="56543" stop="56475"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSYSATIFNFPQKYMNYIPFQGAICLARSLKVVNESLMTLNLGFNEIRDEGAFSIAQALKANEDVRLTSLNLASNFLTKLGQTALTDARDHVFEMTEKELAVMF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="62355" e_stop="62242"/>
            <exon e_start="62163" e_stop="61866"/>
            <exon e_start="60707" e_stop="60498"/>
            <exon e_start="60034" e_stop="59976"/>
            <exon e_start="59761" e_stop="59624"/>
            <exon e_start="59409" e_stop="59335"/>
            <exon e_start="59215" e_stop="59132"/>
            <exon e_start="59038" e_stop="58977"/>
            <exon e_start="58767" e_stop="58698"/>
            <exon e_start="58185" e_stop="58110"/>
            <exon e_start="58012" e_stop="57618"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="0.979"/>
          <exon-intron don_prob="0.891" acc_prob="0.306" e_score="0.977"/>
          <exon-intron don_prob="0.000" acc_prob="0.194" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.677" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.709" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.917" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="62355" e_stop="62242" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="62241" i_stop="62164" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="62163" e_stop="61866" e_length="298"/>
          </exon>
          <intron i_serial="2" don_prob="0.891" acc_prob="0.306">
            <gDNA_intron_boundary i_start="61865" i_stop="60708" i_length="1158"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60707" e_stop="60498" e_length="210"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.194">
            <gDNA_intron_boundary i_start="60497" i_stop="60035" i_length="463"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60034" e_stop="59976" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="59975" i_stop="59762" i_length="214"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59761" e_stop="59624" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.892" acc_prob="0.961">
            <gDNA_intron_boundary i_start="59623" i_stop="59410" i_length="214"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="59409" e_stop="59335" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.677" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59334" i_stop="59216" i_length="119"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="59215" e_stop="59132" e_length="84"/>
          </exon>
          <intron i_serial="7" don_prob="0.709" acc_prob="0.988">
            <gDNA_intron_boundary i_start="59131" i_stop="59039" i_length="93"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="59038" e_stop="58977" e_length="62"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58976" i_stop="58768" i_length="209"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="58767" e_stop="58698" e_length="70"/>
          </exon>
          <intron i_serial="9" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58697" i_stop="58186" i_length="512"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="58185" e_stop="58110" e_length="76"/>
          </exon>
          <intron i_serial="10" don_prob="0.977" acc_prob="0.917">
            <gDNA_intron_boundary i_start="58109" i_stop="58013" i_length="97"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="58012" e_stop="57618" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62355" stop="62242"/>
              <exon start="62163" stop="61866"/>
              <exon start="60707" stop="60498"/>
              <exon start="60034" stop="59976"/>
              <exon start="59761" stop="59646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62355" stop="62242"/>
              <exon start="62163" stop="61866"/>
              <exon start="60707" stop="60498"/>
              <exon start="60034" stop="59976"/>
              <exon start="59761" stop="59721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62336" stop="62242"/>
              <exon start="62163" stop="61866"/>
              <exon start="60707" stop="60589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60686" stop="60498"/>
              <exon start="60034" stop="59976"/>
              <exon start="59761" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60566" stop="60498"/>
              <exon start="60034" stop="59976"/>
              <exon start="59761" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59989" stop="59976"/>
              <exon start="59761" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58110"/>
              <exon start="58012" stop="57970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59983" stop="59976"/>
              <exon start="59761" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59755" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58110"/>
              <exon start="58012" stop="57997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59181" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58110"/>
              <exon start="58012" stop="57635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59181" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58110"/>
              <exon start="58012" stop="57998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58164" stop="58110"/>
              <exon start="58012" stop="57618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58113" stop="58110"/>
              <exon start="58012" stop="57618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249109" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCGCTTTATCTCCTCTTCTGGAACTCTCTCTTCGTTCCTCTCACAGTCTCACTCACTCATTGAGTCTCTCCATGGGCTCATCTTCTACATTCTCTCTGTGTTCTCATCCGACG : GTGAATTTTGAATTTAATGGTAGAAAAGTTGGATACGGATTGCAGAAATCGTTGAGTAGTTCATCCAGTTATTGTTTGATTCATATTTCGCCGATTAGTATAAGTAGTAGAAGAAGAAAATGCGTGCAATTGAGACGTGTAACTGTTAGAGCTGCTTCGTCGTCTAGTACTGGTTCGAGACGTTCGATGAGTACTCGGAGAGTTTACAAGGAATCACAAGCTCAAACGCCAGCATTACCTGTTGACAGAATTGTTTCGTTTGTTGTGCCCGCTGGTGCTTTTGTGGTTATCTCTTTTG : TTTTGTGGAAGCTGGTGGAGAAAATTCTTCTACCCAAACCAGCCAATACTACATCAGAAGAAAGCAAGTCTACTCAGGGATTGAAGTGGTCCATTGCCGCTGGGACAAACTTGTTGCCTGGTTTTGGTGCAAAGATTGAAAGAGAATCCAAGCTGAGGCTTAATGACTTTGCTAAAGAGCTTAGATCTTTCAGCATTGTTGACATGTCAG : GTCGTAACTTTGGAGACGAGGGGCTCTTTTTCCTAGCAGAGAGTTTAGCATATAATCAG : ACAGCTGAGGAAGTAAACTTTGCTGCTAATGGAATAACTGCAGATGGATTGAAGGCCTTTGATGGTATATTGCAATCAAATATTGCTCTAAAGACTCTTAACCTATCTGGAAATGCTATTGGGGATGAAGGAGCCAAG : TGTCTATGTGATATACTGGCAAATAACTCTGGTATTCAAAAGCTCCAGTTGAACAGCACTGGCTTAGGAGATGAG : GGAGCCAAAGCCATCGGTGAAATGCTGAAAAAAAATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCT : GGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAA : CGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGG : GAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTGTCTTTGCGTAAAG : GGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCAAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATTAAAGATGAGGTAATTGAACCACTTAAAACTTTCACAGTTTTCTTCCTTTATTATGTAAAAGACTCTTCTCAGCTAACCAAGCTTTTCACTTGAGAAACCAAACGTGTCCATTTTTGCATAGACGATGTATTTATTTTATCCACAGTTATATTTGAAGGATAAAGTTTAACCTGTCCCCATAAATAAGGTATTTGATTTCTTACGTCGCAGATCCAGACTCGATCTCTTGATATGCATTGACTTTCCCTTCTTTTTTTCTCCATTTACATCATA</gDNA_template>
            <first_frame> R  A  L  S  P  L  L  E  L  S  L  R  S  S  H  S  L  T  H  S  L  S  L  S  M  G  S  S  S  T  F  S  L  C  S  H  P  T  :  V  N  F  E  F  N  G  R  K  V  G  Y  G  L  Q  K  S  L  S  S  S  S  S  Y  C  L  I  H  I  S  P  I  S  I  S  S  R  R  R  K  C  V  Q  L  R  R  V  T  V  R  A  A  S  S  S  S  T  G  S  R  R  S  M  S  T  R  R  V  Y  K  E  S  Q  A  Q  T  P  A  L  P  V  D  R  I  V  S  F  V  V  P  A  G  A  F  V  V  I  S  F   : V  L  W  K  L  V  E  K  I  L  L  P  K  P  A  N  T  T  S  E  E  S  K  S  T  Q  G  L  K  W  S  I  A  A  G  T  N  L  L  P  G  F  G  A  K  I  E  R  E  S  K  L  R  L  N  D  F  A  K  E  L  R  S  F  S  I  V  D  M  S   : G  R  N  F  G  D  E  G  L  F  F  L  A  E  S  L  A  Y  N  Q  :  T  A  E  E  V  N  F  A  A  N  G  I  T  A  D  G  L  K  A  F  D  G  I  L  Q  S  N  I  A  L  K  T  L  N  L  S  G  N  A  I  G  D  E  G  A  K  :  C  L  C  D  I  L  A  N  N  S  G  I  Q  K  L  Q  L  N  S  T  G  L  G  D  E  :  G  A  K  A  I  G  E  M  L  K  K  N  S  T  L  R  V  L  E  L  N  N  N  L  I  D  Y  S  :  G  F  S  G  L  A  G  S  L  L  E  N  K  T  L  Q  S  L  H  L  N :   G  N  Y  G  G  A  L  G  A  A  A  L  A  K  G  L  E  S  N  K  S  L  R  :  E  L  Y  L  Q  G  N  S  V  G  D  E  G  V  R  A  L  I  S  G  L  S  L  R  K   : G  K  L  V  L  L  D  L  A  N  N  S  I  T  A  R  G  A  F  H  V  A  E  Y  V  K  K  S  K  S  L  L  W  L  N  L  Y  M  N  D  I  K  D  E  V  I  E  P  L  K  T  F  T  V  F  F  L  Y  Y  V  K  D  S  S  Q  L  T  K  L  F  T  *  E  T  K  R  V  H  F  C  I  D  D  V  F  I  L  S  T  V  I  F  E  G  *  S  L  T  C  P  H  K  *  G  I  *  F  L  T  S  Q  I  Q  T  R  S  L  D  M  H  *  L  S  L  L  F  F  S  I  Y  I  I </first_frame>
            <second_frame>  A  L  Y  L  L  F  W  N  S  L  F  V  P  L  T  V  S  L  T  H  *  V  S  P  W  A  H  L  L  H  S  L  C  V  L  I  R  R :   *  I  L  N  L  M  V  E  K  L  D  T  D  C  R  N  R  *  V  V  H  P  V  I  V  *  F  I  F  R  R  L  V  *  V  V  E  E  E  N  A  C  N  *  D  V  *  L  L  E  L  L  R  R  L  V  L  V  R  D  V  R  *  V  L  G  E  F  T  R  N  H  K  L  K  R  Q  H  Y  L  L  T  E  L  F  R  L  L  C  P  L  V  L  L  W  L  S  L  L  :  F  C  G  S  W  W  R  K  F  F  Y  P  N  Q  P  I  L  H  Q  K  K  A  S  L  L  R  D  *  S  G  P  L  P  L  G  Q  T  C  C  L  V  L  V  Q  R  L  K  E  N  P  S  *  G  L  M  T  L  L  K  S  L  D  L  S  A  L  L  T  C  Q  :  V  V  T  L  E  T  R  G  S  F  S  *  Q  R  V  *  H  I  I  R :   Q  L  R  K  *  T  L  L  L  M  E  *  L  Q  M  D  *  R  P  L  M  V  Y  C  N  Q  I  L  L  *  R  L  L  T  Y  L  E  M  L  L  G  M  K  E  P  S :   V  Y  V  I  Y  W  Q  I  T  L  V  F  K  S  S  S  *  T  A  L  A  *  E  M  R :   E  P  K  P  S  V  K  C  *  K  K  I  Q  P  C  V  F  L  N  *  T  I  I  *  L  T  I  L :   D  F  Q  V  L  L  D  H  F  L  R  I  K  L  Y  N  P  C  I  S   : T  A  I  M  V  V  L  *  G  L  Q  H  W  L  K  A  W  R  A  I  S  P  *  G :   N  F  I  C  R  G  T  L  L  A  M  K  E  Y  G  H  *  S  L  A  C  L  C  V  K  :  G  N  L  S  Y  L  T  L  P  T  I  Q  L  L  Q  E  E  H  F  M  L  P  N  T  S  K  K  A  K  A  Y  C  G  *  I  S  I  *  M  T  L  K  M  R  *  L  N  H  L  K  L  S  Q  F  S  S  F  I  M  *  K  T  L  L  S  *  P  S  F  S  L  E  K  P  N  V  S  I  F  A  *  T  M  Y  L  F  Y  P  Q  L  Y  L  K  D  K  V  *  P  V  P  I  N  K  V  F  D  F  L  R  R  R  S  R  L  D  L  L  I  C  I  D  F  P  F  F  F  S  P  F  T  S   </second_frame>
            <third_frame>   R  F  I  S  S  S  G  T  L  S  S  F  L  S  Q  S  H  S  L  I  E  S  L  H  G  L  I  F  Y  I  L  S  V  F  S  S  D   : G  E  F  *  I  *  W  *  K  S  W  I  R  I  A  E  I  V  E  *  F  I  Q  L  L  F  D  S  Y  F  A  D  *  Y  K  *  *  K  K  K  M  R  A  I  E  T  C  N  C  *  S  C  F  V  V  *  Y  W  F  E  T  F  D  E  Y  S  E  S  L  Q  G  I  T  S  S  N  A  S  I  T  C  *  Q  N  C  F  V  C  C  A  R  W  C  F  C  G  Y  L  F  C :   F  V  E  A  G  G  E  N  S  S  T  Q  T  S  Q  Y  Y  I  R  R  K  Q  V  Y  S  G  I  E  V  V  H  C  R  W  D  K  L  V  A  W  F  W  C  K  D  *  K  R  I  Q  A  E  A  *  *  L  C  *  R  A  *  I  F  Q  H  C  *  H  V  R :   S  *  L  W  R  R  G  A  L  F  P  S  R  E  F  S  I  *  S   : D  S  *  G  S  K  L  C  C  *  W  N  N  C  R  W  I  E  G  L  *  W  Y  I  A  I  K  Y  C  S  K  D  S  *  P  I  W  K  C  Y  W  G  *  R  S  Q   : V  S  M  *  Y  T  G  K  *  L  W  Y  S  K  A  P  V  E  Q  H  W  L  R  R  *   : G  S  Q  S  H  R  *  N  A  E  K  K  F  N  L  A  C  S  *  T  K  Q  *  S  D  *  L  F   : W  I  F  R  S  C  W  I  T  S  *  E  *  N  F  T  I  L  A  S  Q  :  R  Q  L  W  W  C  F  R  G  C  S  T  G  *  R  L  G  E  Q  *  V  L  E   : G  T  L  F  A  G  E  L  C  W  R  *  R  S  T  G  I  N  L  W  P  V  F  A  *  R :   E  T  C  L  T  *  P  C  Q  Q  F  N  Y  C  K  R  S  I  S  C  C  R  I  R  Q  K  K  Q  K  L  T  V  V  E  S  L  Y  E  *  H  *  R  *  G  N  *  T  T  *  N  F  H  S  F  L  P  L  L  C  K  R  L  F  S  A  N  Q  A  F  H  L  R  N  Q  T  C  P  F  L  H  R  R  C  I  Y  F  I  H  S  Y  I  *  R  I  K  F  N  L  S  P  *  I  R  Y  L  I  S  Y  V  A  D  P  D  S  I  S  *  Y  A  L  T  F  P  S  F  F  L  H  L  H  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62355" stop="62242"/>
                    <exon start="62163" stop="61866"/>
                    <exon start="60707" stop="60498"/>
                    <exon start="60034" stop="59976"/>
                    <exon start="59761" stop="59624"/>
                    <exon start="59409" stop="59335"/>
                    <exon start="59215" stop="59132"/>
                    <exon start="59038" stop="58977"/>
                    <exon start="58767" stop="58698"/>
                    <exon start="58185" stop="58110"/>
                    <exon start="58012" stop="57798"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1398</number_coding_nucleotides>
                  <number_encoded_amino_acids>466</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RALSPLLELSLRSSHSLTHSLSLSMGSSSTFSLCSHPTVNFEFNGRKVGYGLQKSLSSSSSYCLIHISPISISSRRRKCVQLRRVTVRAASSSSTGSRRSMSTRRVYKESQAQTPALPVDRIVSFVVPAGAFVVISFVLWKLVEKILLPKPANTTSEESKSTQGLKWSIAAGTNLLPGFGAKIERESKLRLNDFAKELRSFSIVDMSGRNFGDEGLFFLAESLAYNQTAEEVNFAANGITADGLKAFDGILQSNIALKTLNLSGNAIGDEGAKCLCDILANNSGIQKLQLNSTGLGDEGAKAIGEMLKKNSTLRVLELNNNLIDYSGFSGLAGSLLENKTLQSLHLNGNYGGALGAAALAKGLESNKSLRELYLQGNSVGDEGVRALISGLSLRKGKLVLLDLANNSITARGAFHVAEYVKKSKSLLWLNLYMNDIKDEVIEPLKTFTVFFLYYVKDSSQLTKLFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="57614" e_stop="57550"/>
            <exon e_start="57414" e_stop="57340"/>
            <exon e_start="57266" e_stop="57162"/>
            <exon e_start="57084" e_stop="56989"/>
            <exon e_start="56906" e_stop="56826"/>
            <exon e_start="56739" e_stop="56638"/>
            <exon e_start="56543" e_stop="55825"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.680" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.563" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57614" e_stop="57550" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57549" i_stop="57415" i_length="135"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57414" e_stop="57340" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.888">
            <gDNA_intron_boundary i_start="57339" i_stop="57267" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57266" e_stop="57162" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.993">
            <gDNA_intron_boundary i_start="57161" i_stop="57085" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57084" e_stop="56989" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.921">
            <gDNA_intron_boundary i_start="56988" i_stop="56907" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56906" e_stop="56826" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.680" acc_prob="0.994">
            <gDNA_intron_boundary i_start="56825" i_stop="56740" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="56739" e_stop="56638" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.563">
            <gDNA_intron_boundary i_start="56637" i_stop="56544" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="56543" e_stop="55825" e_length="719"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57614" stop="57550"/>
              <exon start="57414" stop="57340"/>
              <exon start="57266" stop="57162"/>
              <exon start="57084" stop="56989"/>
              <exon start="56906" stop="56849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57614" stop="57550"/>
              <exon start="57414" stop="57340"/>
              <exon start="57266" stop="57162"/>
              <exon start="57084" stop="57075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57558" stop="57550"/>
              <exon start="57414" stop="57340"/>
              <exon start="57266" stop="57162"/>
              <exon start="57084" stop="56989"/>
              <exon start="56906" stop="56826"/>
              <exon start="56739" stop="56638"/>
              <exon start="56543" stop="56426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57206" stop="57162"/>
              <exon start="57084" stop="56989"/>
              <exon start="56906" stop="56826"/>
              <exon start="56739" stop="56638"/>
              <exon start="56543" stop="56214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57197" stop="57162"/>
              <exon start="57084" stop="56989"/>
              <exon start="56906" stop="56826"/>
              <exon start="56739" stop="56638"/>
              <exon start="56543" stop="56180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57178" stop="57162"/>
              <exon start="57084" stop="56989"/>
              <exon start="56906" stop="56826"/>
              <exon start="56739" stop="56638"/>
              <exon start="56543" stop="56219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369944" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56906" stop="56826"/>
              <exon start="56739" stop="56638"/>
              <exon start="56543" stop="56233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56718" stop="56638"/>
              <exon start="56543" stop="56219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258894" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56396" stop="55825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAGGGAGCTGAAAAGATTGCAGAAGCTTTGAAGGAGAACCGCTCGATAACTAATGTTGATCTT : GGGGGCAATGACATACATGCTAAGGGTATTAGTGCCATAGCAGAAGTTCTGAAAGATAATTCTGTCATTACCTCC : TTAGAACTTGGTTACAACCCCATTGGACCAGAGGGGGCAATGGCATTAGCAGAGGTACTCAAGTTTCATGGAAATGTGAAAGATCTCATGCTTGGTTGGTGTCAG : ATCGGAGCCAAAGGTGCAGAACATTTTGCCGATATGTTGAAGTACAATAGTACCATATCAACTCTAGACTTGCGAGCCAATGGACTTAGAGACGAG : GGTGCAATCTGCCTTGCTCGGAGTTTGAAAGTAGTCAATGAATCTTTGATGACACTCAATTTAGGGTTCAATGAAATTAGA : GATGAAGGAGCTTTTTCTATCGCTCAAGCACTTAAAGCAAATGAAGATGTTAGACTCACATCTTTAAATCTTGCCAGTAACTTCCTCACCAAATTAGGACAG : ACAGCTCTCACAGATGCAAGAGACCATGTATTTGAGATGACTGAGAAGGAGCTTGCTGTTATGTTCTAAAATACCACATTCCTTAGATCAGATTTATTTTTCTCCCTGCTTTCATTCTTGAGGTTGGGGCAGGGCTGCATAGGTGAGTATTTTTTTTTCTTTTACCAATGATATTCCTAAGAGTCCGACCTCAGCTCCCCTTTGTGACTGAATCATTTTGAGCGGGGGGACGGTGGAAATTTTGATAAATAACATTCCGTTTCTGAAACATTAGTGGCAAGTATATAGAGATTACTTCTATTCACCATTTCATATTCATTCTCTAGTTTGAAACTCTTGTGAGTTGTTCTTTTACGCTTATTTTCGTGTTGCAGGACAGAATTAACTTACTTTTAGTTTGTCATTCAACTGTTTTAAAGTAATATGATAATTGTGCTGTGTTCTAAATGCTAATCCATCCCCTCGAAAAAAAATACAGAGGGATATGTTAAATTTATTTGGTCATTTTAGTAGTTTGAAAAAATTTACATGAACTTGTAAAGTTTTCAAAAAACAAAAAAACAGAATTTAGCTGGATAAGTTTGGCCAGCTGGGGTTTTCAGTCTTTAAGAATTCAGTGGATAACTCTTCAAAATTACTTTGAACAGCGTGTTTTCAGGACAGAGCTGATGAATATGAAATGTGTCTAACCTCTCTAAATGACATGTCAAATGAATATG</gDNA_template>
            <first_frame> I  R  E  L  K  R  L  Q  K  L  *  R  R  T  A  R  *  L  M  L  I  L :   G  A  M  T  Y  M  L  R  V  L  V  P  *  Q  K  F  *  K  I  I  L  S  L  P  P :   *  N  L  V  T  T  P  L  D  Q  R  G  Q  W  H  *  Q  R  Y  S  S  F  M  E  M  *  K  I  S  C  L  V  G  V  R :   S  E  P  K  V  Q  N  I  L  P  I  C  *  S  T  I  V  P  Y  Q  L  *  T  C  E  P  M  D  L  E  T  R :   V  Q  S  A  L  L  G  V  *  K  *  S  M  N  L  *  *  H  S  I  *  G  S  M  K  L  E :   M  K  E  L  F  L  S  L  K  H  L  K  Q  M  K  M  L  D  S  H  L  *  I  L  P  V  T  S  S  P  N  *  D  R :   Q  L  S  Q  M  Q  E  T  M  Y  L  R  *  L  R  R  S  L  L  L  C  S  K  I  P  H  S  L  D  Q  I  Y  F  S  P  C  F  H  S  *  G  W  G  R  A  A  *  V  S  I  F  F  S  F  T  N  D  I  P  K  S  P  T  S  A  P  L  C  D  *  I  I  L  S  G  G  T  V  E  I  L  I  N  N  I  P  F  L  K  H  *  W  Q  V  Y  R  D  Y  F  Y  S  P  F  H  I  H  S  L  V  *  N  S  C  E  L  F  F  Y  A  Y  F  R  V  A  G  Q  N  *  L  T  F  S  L  S  F  N  C  F  K  V  I  *  *  L  C  C  V  L  N  A  N  P  S  P  R  K  K  I  Q  R  D  M  L  N  L  F  G  H  F  S  S  L  K  K  F  T  *  T  C  K  V  F  K  K  Q  K  N  R  I  *  L  D  K  F  G  Q  L  G  F  S  V  F  K  N  S  V  D  N  S  S  K  L  L  *  T  A  C  F  Q  D  R  A  D  E  Y  E  M  C  L  T  S  L  N  D  M  S  N  E  Y  </first_frame>
            <second_frame>  S  G  S  *  K  D  C  R  S  F  E  G  E  P  L  D  N  *  C  *  S   : W  G  Q  *  H  T  C  *  G  Y  *  C  H  S  R  S  S  E  R  *  F  C  H  Y  L   : L  R  T  W  L  Q  P  H  W  T  R  G  G  N  G  I  S  R  G  T  Q  V  S  W  K  C  E  R  S  H  A  W  L  V  S   : D  R  S  Q  R  C  R  T  F  C  R  Y  V  E  V  Q  *  Y  H  I  N  S  R  L  A  S  Q  W  T  *  R  R   : G  C  N  L  P  C  S  E  F  E  S  S  Q  *  I  F  D  D  T  Q  F  R  V  Q  *  N  *   : R  *  R  S  F  F  Y  R  S  S  T  *  S  K  *  R  C  *  T  H  I  F  K  S  C  Q  *  L  P  H  Q  I  R  T   : D  S  S  H  R  C  K  R  P  C  I  *  D  D  *  E  G  A  C  C  Y  V  L  K  Y  H  I  P  *  I  R  F  I  F  L  P  A  F  I  L  E  V  G  A  G  L  H  R  *  V  F  F  F  L  L  P  M  I  F  L  R  V  R  P  Q  L  P  F  V  T  E  S  F  *  A  G  G  R  W  K  F  *  *  I  T  F  R  F  *  N  I  S  G  K  Y  I  E  I  T  S  I  H  H  F  I  F  I  L  *  F  E  T  L  V  S  C  S  F  T  L  I  F  V  L  Q  D  R  I  N  L  L  L  V  C  H  S  T  V  L  K  *  Y  D  N  C  A  V  F  *  M  L  I  H  P  L  E  K  K  Y  R  G  I  C  *  I  Y  L  V  I  L  V  V  *  K  N  L  H  E  L  V  K  F  S  K  N  K  K  T  E  F  S  W  I  S  L  A  S  W  G  F  Q  S  L  R  I  Q  W  I  T  L  Q  N  Y  F  E  Q  R  V  F  R  T  E  L  M  N  M  K  C  V  *  P  L  *  M  T  C  Q  M  N  M </second_frame>
            <third_frame>   Q  G  A  E  K  I  A  E  A  L  K  E  N  R  S  I  T  N  V  D  L  :  G  G  N  D  I  H  A  K  G  I  S  A  I  A  E  V  L  K  D  N  S  V  I  T  S  :  L  E  L  G  Y  N  P  I  G  P  E  G  A  M  A  L  A  E  V  L  K  F  H  G  N  V  K  D  L  M  L  G  W  C  Q  :  I  G  A  K  G  A  E  H  F  A  D  M  L  K  Y  N  S  T  I  S  T  L  D  L  R  A  N  G  L  R  D  E  :  G  A  I  C  L  A  R  S  L  K  V  V  N  E  S  L  M  T  L  N  L  G  F  N  E  I  R  :  D  E  G  A  F  S  I  A  Q  A  L  K  A  N  E  D  V  R  L  T  S  L  N  L  A  S  N  F  L  T  K  L  G  Q  :  T  A  L  T  D  A  R  D  H  V  F  E  M  T  E  K  E  L  A  V  M  F  *  N  T  T  F  L  R  S  D  L  F  F  S  L  L  S  F  L  R  L  G  Q  G  C  I  G  E  Y  F  F  F  F  Y  Q  *  Y  S  *  E  S  D  L  S  S  P  L  *  L  N  H  F  E  R  G  D  G  G  N  F  D  K  *  H  S  V  S  E  T  L  V  A  S  I  *  R  L  L  L  F  T  I  S  Y  S  F  S  S  L  K  L  L  *  V  V  L  L  R  L  F  S  C  C  R  T  E  L  T  Y  F  *  F  V  I  Q  L  F  *  S  N  M  I  I  V  L  C  S  K  C  *  S  I  P  S  K  K  N  T  E  G  Y  V  K  F  I  W  S  F  *  *  F  E  K  I  Y  M  N  L  *  S  F  Q  K  T  K  K  Q  N  L  A  G  *  V  W  P  A  G  V  F  S  L  *  E  F  S  G  *  L  F  K  I  T  L  N  S  V  F  S  G  Q  S  *  *  I  *  N  V  S  N  L  S  K  *  H  V  K  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57612" stop="57550"/>
                    <exon start="57414" stop="57340"/>
                    <exon start="57266" stop="57162"/>
                    <exon start="57084" stop="56989"/>
                    <exon start="56906" stop="56826"/>
                    <exon start="56739" stop="56638"/>
                    <exon start="56543" stop="56475"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGAEKIAEALKENRSITNVDLGGNDIHAKGISAIAEVLKDNSVITSLELGYNPIGPEGAMALAEVLKFHGNVKDLMLGWCQIGAKGAEHFADMLKYNSTISTLDLRANGLRDEGAICLARSLKVVNESLMTLNLGFNEIRDEGAFSIAQALKANEDVRLTSLNLASNFLTKLGQTALTDARDHVFEMTEKELAVMF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="62355" e_stop="62242"/>
            <exon e_start="62163" e_stop="61866"/>
            <exon e_start="60707" e_stop="60498"/>
            <exon e_start="60034" e_stop="59976"/>
            <exon e_start="59761" e_stop="59624"/>
            <exon e_start="59409" e_stop="59335"/>
            <exon e_start="59215" e_stop="59132"/>
            <exon e_start="59038" e_stop="58977"/>
            <exon e_start="58767" e_stop="58698"/>
            <exon e_start="58185" e_stop="58110"/>
            <exon e_start="58033" e_stop="57891"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="0.979"/>
          <exon-intron don_prob="0.891" acc_prob="0.306" e_score="0.977"/>
          <exon-intron don_prob="0.000" acc_prob="0.194" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.677" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.709" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.892" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="62355" e_stop="62242" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="62241" i_stop="62164" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="62163" e_stop="61866" e_length="298"/>
          </exon>
          <intron i_serial="2" don_prob="0.891" acc_prob="0.306">
            <gDNA_intron_boundary i_start="61865" i_stop="60708" i_length="1158"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60707" e_stop="60498" e_length="210"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.194">
            <gDNA_intron_boundary i_start="60497" i_stop="60035" i_length="463"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60034" e_stop="59976" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="59975" i_stop="59762" i_length="214"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59761" e_stop="59624" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.892" acc_prob="0.961">
            <gDNA_intron_boundary i_start="59623" i_stop="59410" i_length="214"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="59409" e_stop="59335" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.677" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59334" i_stop="59216" i_length="119"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="59215" e_stop="59132" e_length="84"/>
          </exon>
          <intron i_serial="7" don_prob="0.709" acc_prob="0.988">
            <gDNA_intron_boundary i_start="59131" i_stop="59039" i_length="93"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="59038" e_stop="58977" e_length="62"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58976" i_stop="58768" i_length="209"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="58767" e_stop="58698" e_length="70"/>
          </exon>
          <intron i_serial="9" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58697" i_stop="58186" i_length="512"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="58185" e_stop="58110" e_length="76"/>
          </exon>
          <intron i_serial="10" don_prob="0.977" acc_prob="0.892">
            <gDNA_intron_boundary i_start="58109" i_stop="58034" i_length="76"/>
          </intron>
          <exon e_serial="11" e_score="0.986">
            <gDNA_exon_boundary e_start="58033" e_stop="57891" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62355" stop="62242"/>
              <exon start="62163" stop="61866"/>
              <exon start="60707" stop="60498"/>
              <exon start="60034" stop="59976"/>
              <exon start="59761" stop="59646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62355" stop="62242"/>
              <exon start="62163" stop="61866"/>
              <exon start="60707" stop="60498"/>
              <exon start="60034" stop="59976"/>
              <exon start="59761" stop="59721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62336" stop="62242"/>
              <exon start="62163" stop="61866"/>
              <exon start="60707" stop="60589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60686" stop="60498"/>
              <exon start="60034" stop="59976"/>
              <exon start="59761" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60566" stop="60498"/>
              <exon start="60034" stop="59976"/>
              <exon start="59761" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59983" stop="59976"/>
              <exon start="59761" stop="59624"/>
              <exon start="59409" stop="59335"/>
              <exon start="59215" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59021" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58110"/>
              <exon start="58033" stop="57891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244826" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCGCTTTATCTCCTCTTCTGGAACTCTCTCTTCGTTCCTCTCACAGTCTCACTCACTCATTGAGTCTCTCCATGGGCTCATCTTCTACATTCTCTCTGTGTTCTCATCCGACG : GTGAATTTTGAATTTAATGGTAGAAAAGTTGGATACGGATTGCAGAAATCGTTGAGTAGTTCATCCAGTTATTGTTTGATTCATATTTCGCCGATTAGTATAAGTAGTAGAAGAAGAAAATGCGTGCAATTGAGACGTGTAACTGTTAGAGCTGCTTCGTCGTCTAGTACTGGTTCGAGACGTTCGATGAGTACTCGGAGAGTTTACAAGGAATCACAAGCTCAAACGCCAGCATTACCTGTTGACAGAATTGTTTCGTTTGTTGTGCCCGCTGGTGCTTTTGTGGTTATCTCTTTTG : TTTTGTGGAAGCTGGTGGAGAAAATTCTTCTACCCAAACCAGCCAATACTACATCAGAAGAAAGCAAGTCTACTCAGGGATTGAAGTGGTCCATTGCCGCTGGGACAAACTTGTTGCCTGGTTTTGGTGCAAAGATTGAAAGAGAATCCAAGCTGAGGCTTAATGACTTTGCTAAAGAGCTTAGATCTTTCAGCATTGTTGACATGTCAG : GTCGTAACTTTGGAGACGAGGGGCTCTTTTTCCTAGCAGAGAGTTTAGCATATAATCAG : ACAGCTGAGGAAGTAAACTTTGCTGCTAATGGAATAACTGCAGATGGATTGAAGGCCTTTGATGGTATATTGCAATCAAATATTGCTCTAAAGACTCTTAACCTATCTGGAAATGCTATTGGGGATGAAGGAGCCAAG : TGTCTATGTGATATACTGGCAAATAACTCTGGTATTCAAAAGCTCCAGTTGAACAGCACTGGCTTAGGAGATGAG : GGAGCCAAAGCCATCGGTGAAATGCTGAAAAAAAATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCT : GGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAA : CGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGG : GAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTGTCTTTGCGTAAAG : GTCACCATTATATGTCTGCAGGGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCAAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATT</gDNA_template>
            <first_frame> R  A  L  S  P  L  L  E  L  S  L  R  S  S  H  S  L  T  H  S  L  S  L  S  M  G  S  S  S  T  F  S  L  C  S  H  P  T  :  V  N  F  E  F  N  G  R  K  V  G  Y  G  L  Q  K  S  L  S  S  S  S  S  Y  C  L  I  H  I  S  P  I  S  I  S  S  R  R  R  K  C  V  Q  L  R  R  V  T  V  R  A  A  S  S  S  S  T  G  S  R  R  S  M  S  T  R  R  V  Y  K  E  S  Q  A  Q  T  P  A  L  P  V  D  R  I  V  S  F  V  V  P  A  G  A  F  V  V  I  S  F   : V  L  W  K  L  V  E  K  I  L  L  P  K  P  A  N  T  T  S  E  E  S  K  S  T  Q  G  L  K  W  S  I  A  A  G  T  N  L  L  P  G  F  G  A  K  I  E  R  E  S  K  L  R  L  N  D  F  A  K  E  L  R  S  F  S  I  V  D  M  S   : G  R  N  F  G  D  E  G  L  F  F  L  A  E  S  L  A  Y  N  Q  :  T  A  E  E  V  N  F  A  A  N  G  I  T  A  D  G  L  K  A  F  D  G  I  L  Q  S  N  I  A  L  K  T  L  N  L  S  G  N  A  I  G  D  E  G  A  K  :  C  L  C  D  I  L  A  N  N  S  G  I  Q  K  L  Q  L  N  S  T  G  L  G  D  E  :  G  A  K  A  I  G  E  M  L  K  K  N  S  T  L  R  V  L  E  L  N  N  N  L  I  D  Y  S  :  G  F  S  G  L  A  G  S  L  L  E  N  K  T  L  Q  S  L  H  L  N :   G  N  Y  G  G  A  L  G  A  A  A  L  A  K  G  L  E  S  N  K  S  L  R  :  E  L  Y  L  Q  G  N  S  V  G  D  E  G  V  R  A  L  I  S  G  L  S  L  R  K   : G  H  H  Y  M  S  A  G  K  L  V  L  L  D  L  A  N  N  S  I  T  A  R  G  A  F  H  V  A  E  Y  V  K  K  S  K  S  L  L  W  L  N  L  Y  M  N  D  I </first_frame>
            <second_frame>  A  L  Y  L  L  F  W  N  S  L  F  V  P  L  T  V  S  L  T  H  *  V  S  P  W  A  H  L  L  H  S  L  C  V  L  I  R  R :   *  I  L  N  L  M  V  E  K  L  D  T  D  C  R  N  R  *  V  V  H  P  V  I  V  *  F  I  F  R  R  L  V  *  V  V  E  E  E  N  A  C  N  *  D  V  *  L  L  E  L  L  R  R  L  V  L  V  R  D  V  R  *  V  L  G  E  F  T  R  N  H  K  L  K  R  Q  H  Y  L  L  T  E  L  F  R  L  L  C  P  L  V  L  L  W  L  S  L  L  :  F  C  G  S  W  W  R  K  F  F  Y  P  N  Q  P  I  L  H  Q  K  K  A  S  L  L  R  D  *  S  G  P  L  P  L  G  Q  T  C  C  L  V  L  V  Q  R  L  K  E  N  P  S  *  G  L  M  T  L  L  K  S  L  D  L  S  A  L  L  T  C  Q  :  V  V  T  L  E  T  R  G  S  F  S  *  Q  R  V  *  H  I  I  R :   Q  L  R  K  *  T  L  L  L  M  E  *  L  Q  M  D  *  R  P  L  M  V  Y  C  N  Q  I  L  L  *  R  L  L  T  Y  L  E  M  L  L  G  M  K  E  P  S :   V  Y  V  I  Y  W  Q  I  T  L  V  F  K  S  S  S  *  T  A  L  A  *  E  M  R :   E  P  K  P  S  V  K  C  *  K  K  I  Q  P  C  V  F  L  N  *  T  I  I  *  L  T  I  L :   D  F  Q  V  L  L  D  H  F  L  R  I  K  L  Y  N  P  C  I  S   : T  A  I  M  V  V  L  *  G  L  Q  H  W  L  K  A  W  R  A  I  S  P  *  G :   N  F  I  C  R  G  T  L  L  A  M  K  E  Y  G  H  *  S  L  A  C  L  C  V  K  :  V  T  I  I  C  L  Q  G  N  L  S  Y  L  T  L  P  T  I  Q  L  L  Q  E  E  H  F  M  L  P  N  T  S  K  K  A  K  A  Y  C  G  *  I  S  I  *  M  T   </second_frame>
            <third_frame>   R  F  I  S  S  S  G  T  L  S  S  F  L  S  Q  S  H  S  L  I  E  S  L  H  G  L  I  F  Y  I  L  S  V  F  S  S  D   : G  E  F  *  I  *  W  *  K  S  W  I  R  I  A  E  I  V  E  *  F  I  Q  L  L  F  D  S  Y  F  A  D  *  Y  K  *  *  K  K  K  M  R  A  I  E  T  C  N  C  *  S  C  F  V  V  *  Y  W  F  E  T  F  D  E  Y  S  E  S  L  Q  G  I  T  S  S  N  A  S  I  T  C  *  Q  N  C  F  V  C  C  A  R  W  C  F  C  G  Y  L  F  C :   F  V  E  A  G  G  E  N  S  S  T  Q  T  S  Q  Y  Y  I  R  R  K  Q  V  Y  S  G  I  E  V  V  H  C  R  W  D  K  L  V  A  W  F  W  C  K  D  *  K  R  I  Q  A  E  A  *  *  L  C  *  R  A  *  I  F  Q  H  C  *  H  V  R :   S  *  L  W  R  R  G  A  L  F  P  S  R  E  F  S  I  *  S   : D  S  *  G  S  K  L  C  C  *  W  N  N  C  R  W  I  E  G  L  *  W  Y  I  A  I  K  Y  C  S  K  D  S  *  P  I  W  K  C  Y  W  G  *  R  S  Q   : V  S  M  *  Y  T  G  K  *  L  W  Y  S  K  A  P  V  E  Q  H  W  L  R  R  *   : G  S  Q  S  H  R  *  N  A  E  K  K  F  N  L  A  C  S  *  T  K  Q  *  S  D  *  L  F   : W  I  F  R  S  C  W  I  T  S  *  E  *  N  F  T  I  L  A  S  Q  :  R  Q  L  W  W  C  F  R  G  C  S  T  G  *  R  L  G  E  Q  *  V  L  E   : G  T  L  F  A  G  E  L  C  W  R  *  R  S  T  G  I  N  L  W  P  V  F  A  *  R :   S  P  L  Y  V  C  R  E  T  C  L  T  *  P  C  Q  Q  F  N  Y  C  K  R  S  I  S  C  C  R  I  R  Q  K  K  Q  K  L  T  V  V  E  S  L  Y  E  *  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62355" stop="62242"/>
                    <exon start="62163" stop="61866"/>
                    <exon start="60707" stop="60498"/>
                    <exon start="60034" stop="59976"/>
                    <exon start="59761" stop="59624"/>
                    <exon start="59409" stop="59335"/>
                    <exon start="59215" stop="59132"/>
                    <exon start="59038" stop="58977"/>
                    <exon start="58767" stop="58698"/>
                    <exon start="58185" stop="58110"/>
                    <exon start="58033" stop="57891"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1329</number_coding_nucleotides>
                  <number_encoded_amino_acids>443</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RALSPLLELSLRSSHSLTHSLSLSMGSSSTFSLCSHPTVNFEFNGRKVGYGLQKSLSSSSSYCLIHISPISISSRRRKCVQLRRVTVRAASSSSTGSRRSMSTRRVYKESQAQTPALPVDRIVSFVVPAGAFVVISFVLWKLVEKILLPKPANTTSEESKSTQGLKWSIAAGTNLLPGFGAKIERESKLRLNDFAKELRSFSIVDMSGRNFGDEGLFFLAESLAYNQTAEEVNFAANGITADGLKAFDGILQSNIALKTLNLSGNAIGDEGAKCLCDILANNSGIQKLQLNSTGLGDEGAKAIGEMLKKNSTLRVLELNNNLIDYSGFSGLAGSLLENKTLQSLHLNGNYGGALGAAALAKGLESNKSLRELYLQGNSVGDEGVRALISGLSLRKGHHYMSAGKLVLLDLANNSITARGAFHVAEYVKKSKSLLWLNLYMNDI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="72121" PGL_stop="72620"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72121" e_stop="72620"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72121" e_stop="72620" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72121" stop="72620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72123" stop="72620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72123" stop="72615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303614" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTAAAAAAAATAAAATTATATTCTCAACCAATAAAACAAGTTGAGAATAAAACAAGTTGAAGGCAATATTTGAATTTTGAAAAACGAGAAAGTAATGGCTTTCAAAGTTTCAAGTGTTGCATTCAACTTCATTGCTTGTGTTGTATTTTTAGCGTCTGTTGTTATAGCTCATGAGGGCCATGACCACCATGCCCCCGCCCCCGCCCCCTCTCCATCGCAATCCTCCGGTGCCATAATCACCTCATTGCCTTCAATGGTGGTTGGATTTTTCAGTTTGGTTATTTCTTTCCTTGTTATTAAGGAGAGAGTTTAAAGTTTAAATGTTTATGGTCATCTTTGTTTTTGTGTTTACGATTCATTATGATACGTTTGTGAGTTTCTTGACTTTTTTTTTTGTATTGCTTTTTGATGTGTTTAATTGTTGTATCATGGCAAGTTGTTTGTACTCTTTTCTCAAAATTATGAAATTGTATCAAATATGTTTAAGTTGAGTCATTA</gDNA_template>
            <first_frame> S  *  K  K  *  N  Y  I  L  N  Q  *  N  K  L  R  I  K  Q  V  E  G  N  I  *  I  L  K  N  E  K  V  M  A  F  K  V  S  S  V  A  F  N  F  I  A  C  V  V  F  L  A  S  V  V  I  A  H  E  G  H  D  H  H  A  P  A  P  A  P  S  P  S  Q  S  S  G  A  I  I  T  S  L  P  S  M  V  V  G  F  F  S  L  V  I  S  F  L  V  I  K  E  R  V  *  S  L  N  V  Y  G  H  L  C  F  C  V  Y  D  S  L  *  Y  V  C  E  F  L  D  F  F  F  C  I  A  F  *  C  V  *  L  L  Y  H  G  K  L  F  V  L  F  S  Q  N  Y  E  I  V  S  N  M  F  K  L  S  H   </first_frame>
            <second_frame>  P  K  K  N  K  I  I  F  S  T  N  K  T  S  *  E  *  N  K  L  K  A  I  F  E  F  *  K  T  R  K  *  W  L  S  K  F  Q  V  L  H  S  T  S  L  L  V  L  Y  F  *  R  L  L  L  *  L  M  R  A  M  T  T  M  P  P  P  P  P  P  L  H  R  N  P  P  V  P  *  S  P  H  C  L  Q  W  W  L  D  F  S  V  W  L  F  L  S  L  L  L  R  R  E  F  K  V  *  M  F  M  V  I  F  V  F  V  F  T  I  H  Y  D  T  F  V  S  F  L  T  F  F  F  V  L  L  F  D  V  F  N  C  C  I  M  A  S  C  L  Y  S  F  L  K  I  M  K  L  Y  Q  I  C  L  S  *  V  I  </second_frame>
            <third_frame>   L  K  K  I  K  L  Y  S  Q  P  I  K  Q  V  E  N  K  T  S  *  R  Q  Y  L  N  F  E  K  R  E  S  N  G  F  Q  S  F  K  C  C  I  Q  L  H  C  L  C  C  I  F  S  V  C  C  Y  S  S  *  G  P  *  P  P  C  P  R  P  R  P  L  S  I  A  I  L  R  C  H  N  H  L  I  A  F  N  G  G  W  I  F  Q  F  G  Y  F  F  P  C  Y  *  G  E  S  L  K  F  K  C  L  W  S  S  L  F  L  C  L  R  F  I  M  I  R  L  *  V  S  *  L  F  F  L  Y  C  F  L  M  C  L  I  V  V  S  W  Q  V  V  C  T  L  F  S  K  L  *  N  C  I  K  Y  V  *  V  E  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72196" stop="72435"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILKNEKVMAFKVSSVAFNFIACVVFLASVVIAHEGHDHHAPAPAPSPSQSSGAIITSLPSMVVGFFSLVISFLVIKERV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 133 chains have been computed
$ 
$ memory statistics:
$ 192776 bytes spliced alignments in total
$ 93 spliced alignments have been stored
$ 2072 bytes was the average size of a spliced alignment
$ 21936 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 2193 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 160 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:27:02
-->
