<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:27:42"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7011" ref_strand="+" ref_description="SGN-M7011 C2_At1g70200 [cosii_markers]">
      <seq>aatcttttactcttcttcatcttcattcttccccaaaaaacctcagcttaatccccagatgcttatactgataactgataaatccaagtagataacgaagaagaagaagaagatatacctgttaatcccagaagatttgagctttttccgagttccatttcaagttttgcagtttctgttatagaaatgcttagcttaggaagttatccaaggcaaccccattgttgtgccagcacaatttcacaatgtcttcctcttttttgcaagattcctcaaccccaattgttttttacttcaaatacagtgacccatttaaggattcgttctcttattgagcaaaaacgaactggggtgtgcgtttttgcacgcaaggatgaagaaaaaagggggaatagtgtggtagaaatggaagaaattgaggattttgatgatgactatgacgacgacgacgatgattttctaggggatgaggaagaggttgacggagacgacgacgacgatgatgaggtgattattccattaagaaatatgaagaaatggttagaaaacaagccgcgtgggtttggagtagataaagagtatgatacttcagttgaagataagctgatggaagaaattgaacagagtagaaaagctcagcttgctaatatcaataagctcaaaaacaatccagttaaagcaaataccaaacaagttcagcaggataaagttgttcaggatggactctgtgtgcgcttggtcaatcttccctaagaaatgaacgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="15150" stop="17171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15450" g_stop="16158" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16159" i_stop="16814" i_length="656">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16815" g_stop="16871" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="766" r_length="57" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-M7011" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15450" e_stop="16158"/>
          <exon e_start="16815" e_stop="16871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTTTACTCTTCTTCATCTTCATTCTTCCCCAAAAAACCTCAGCTTAATCCCCAGATGCTTATACTGATAACTGATAAATCCAAGTAGATAACGAAGAAGAAGAAGAAGATATACCTGTTAATCCCAGAAGATTTGAGCTTTTTCCGAGTTCCATTTCAAGTTTTGCAGTTTCTGTTATAGAAATGCTTAGCTTAGGAAGTTATCCAAGGCAACCCCATTGTTGTGCCAGCACAATTTCACAATGTCTTCCTCTTTTTTGCAAGATTCCTCAACCCCAATTGTTTTTTACTTCAAATACAGTGACCCATTTAAGGATTCGTTCTCTTATTGAGCAAAAACGAACTGGGGTGTGCGTTTTTGCACGCAAGGATGAAGAAAAAAGGGGGAATAGTGTGGTAGAAATGGAAGAAATTGAGGATTTTGATGATGACTATGACGACGACGACGATGATTTTCTAGGGGATGAGGAAGAGGTTGACGGAGACGACGACGACGATGATGAGGTGATTATTCCATTAAGAAATATGAAGAAATGGTTAGAAAACAAGCCGCGTGGGTTTGGAGTAGATAAAGAGTATGATACTTCAGTTGAAGATAAGCTGATGGAAGAAATTGAACAGAGTAGAAAAGCTCAGCTTGCTAATATCAATAAGCTCAAAAACAATCCAGTTAAAGCAAATACCAAACAAGTTCAGCAGGATAAAGGTAACTTCTTTTTGTATATTTGGGTCTTAGATTATATCATCTATGAATGCAACTGAATTGATAGGAAACAATGAACAAGTTTATGTATTTTGTTCTTAGTTAGTTACCCTTGACAATGACTCCTTTATCACCTTAAGGACTTAATAGGAGCTGAGCTGAGCATTTGTTCTACTATGATGTTCGGGTCAGCTTGTGCACAACTCGATTAATTTCAATGGATACTTGCTAGTTGCTACCTCTAACCAAGATATATTTTTTTGTTAGCTTTTGGATGCAATCTGGTGATTGCACATGGTGTAGATCAGTAGATGTAATGCTACACACAAAATAGAGGGATTCCACAACCTGTAATTATGTCTTTAATTGTTCATTCTTAATTCGAACCATCATTTAAAAAGGACTAATATCAGGGCTGAAATTTGGTGTATCGCAACCCAAGTCAGACGTTTGAGCTTGATGTTGGAACTAAAATTACGAATGTTATGGAATCAAACAACTTTAACTAGTTAAGTGATCGGGAGTATTACTTGTAGATGTTTAGTGTAGAGCAAATAAGTTTGGAGGATAAAGTAGAGACCTTAAGGAGCTCCAATGACTTCTGCATCCTCTACTCTTTTAATAAGCAGTATTTCACTTACGTTCTACAATTTCTAAAGTTGTTCAGGATGGACTCTGTGTGCGCTTGGTCAATCTTCCTAAGAAAATGAACGTTG</genome_strand>
        <mrna_strand>AATCTTTTACTCTTCTTCATCTTCATTCTTCCCCAAAAAACCTCAGCTTAATCCCCAGATGCTTATACTGATAACTGATAAATCCAAGTAGATAACGAAGAAGAAGAAGAAGATATACCTGTTAATCCCAGAAGATTTGAGCTTTTTCCGAGTTCCATTTCAAGTTTTGCAGTTTCTGTTATAGAAATGCTTAGCTTAGGAAGTTATCCAAGGCAACCCCATTGTTGTGCCAGCACAATTTCACAATGTCTTCCTCTTTTTTGCAAGATTCCTCAACCCCAATTGTTTTTTACTTCAAATACAGTGACCCATTTAAGGATTCGTTCTCTTATTGAGCAAAAACGAACTGGGGTGTGCGTTTTTGCACGCAAGGATGAAGAAAAAAGGGGGAATAGTGTGGTAGAAATGGAAGAAATTGAGGATTTTGATGATGACTATGACGACGACGACGATGATTTTCTAGGGGATGAGGAAGAGGTTGACGGAGACGACGACGACGATGATGAGGTGATTATTCCATTAAGAAATATGAAGAAATGGTTAGAAAACAAGCCGCGTGGGTTTGGAGTAGATAAAGAGTATGATACTTCAGTTGAAGATAAGCTGATGGAAGAAATTGAACAGAGTAGAAAAGCTCAGCTTGCTAATATCAATAAGCTCAAAAACAATCCAGTTAAAGCAAATACCAAACAAGTTCAGCAGGATAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCAGGATGGACTCTGTGTGCGCTTGGTCAATCTTCCCTAAGAAATGAACGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7011-2" ref_strand="+" ref_description="SGN-M7011-2 C2_At1g70200-2 [cosii_markers]">
      <seq>cttcattcttccccaaaaaacctcagctaaatccccagatgcttatactgataactggtaaacccgagtagataacgaagaagaagaagaagtcgatatacctgttaatccaagaaaatttgagctttttccgagttccatttcaagttttgcagtttctgttatagaaatgcttagcttaggaagttatccaaggcaaccccattgttgtgccagcccaatttcacaatgtattcctcttatttccaagattcctcgaacccagttgttttttacctcaaataaagtgacccatttaaggattcgttctcttattgggcaaaaacgaactgggagttgcgtttttgcacgcaaggatgaagaaagaagggggaatggtgtggtagaaatggaagaaattgaggattttgatgatgactatgaagatgatgatcttgatgtggatgattttctaggggatgaggaagatgttgatggagatgatgatgatgatgatgatgattattccattgagaaatatgaagaaatggttagaaaacaagcctcgtgggtttggagtagataaagagtatgatacttcagttgaagataagctgatggaagaaattgagcagagtagaaaagctcagcttgctaatatcaataagctcaagaacaatccagttaaagcaaataccaaacaagttcagcaggataaaggatggactctgtgtgcgcttggtcaatcttcctaagaaaatgaacattgataaggatctacgagtggctttgaaaggagttccaggaatagtcaacatagttccagttgtgactgggaacaagaagaccaggaatcctgtttgcaaaggcctggcctatattaacttcaagtctaaggatgaagcacaaagatttgtgcaaatgttttctggacgaagtataagttttggtaaggttcagaagcaaataaagtgtgagatgataaatcccggatcaccaaagtccacaactacagagtccgttgataaaattaagtatgtccctgaacaagatctgcacggagaccaggatgatgattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="15170" stop="17596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15470" g_stop="16158" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16159" i_stop="16822" i_length="664">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.859" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16823" g_stop="17013" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="890" r_length="191" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17014" i_stop="17116" i_length="103">
            <donor d_prob="0.564" d_score="0.92"/>
            <acceptor a_prob="0.451" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17117" g_stop="17258" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="891" r_stop="1032" r_length="142" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-M7011-2" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>1022</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7011-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15470" e_stop="16158"/>
          <exon e_start="16823" e_stop="17013"/>
          <exon e_start="17117" e_stop="17258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTCTTCCCCAAAAAACCTCAGCTTAATCCCCAGATGCTTATACTGATAACTGATAAATCCAAGTAGATAACGAAGAAGAAGAAGAA---GATATACCTGTTAATCCCAGAAGATTTGAGCTTTTTCCGAGTTCCATTTCAAGTTTTGCAGTTTCTGTTATAGAAATGCTTAGCTTAGGAAGTTATCCAAGGCAACCCCATTGTTGTGCCAGCACAATTTCACAATGTCTTCCTCTTTTTTGCAAGATTCCTCAACCCCAATTGTTTTTTACTTCAAATACAGTGACCCATTTAAGGATTCGTTCTCTTATTGAGCAAAAACGAACTGGGGTGTGCGTTTTTGCACGCAAGGATGAAGAAAAAAGGGGGAATAGTGTGGTAGAAATGGAAGAAATTGAGGATTTTGATGATGACTAT---GACGACGA-C--GA---CGATGATTTTCTAGGGGATGAGGAAGAGGTTGACGGAGACGACGACGACGATGATGAGGTGATTATTCCATTAAGAAATATGAAGAAATGGTTAGAAAACAAGCCGCGTGGGTTTGGAGTAGATAAAGAGTATGATACTTCAGTTGAAGATAAGCTGATGGAAGAAATTGAACAGAGTAGAAAAGCTCAGCTTGCTAATATCAATAAGCTCAAAAACAATCCAGTTAAAGCAAATACCAAACAAGTTCAGCAGGATAAAGGTAACTTCTTTTTGTATATTTGGGTCTTAGATTATATCATCTATGAATGCAACTGAATTGATAGGAAACAATGAACAAGTTTATGTATTTTGTTCTTAGTTAGTTACCCTTGACAATGACTCCTTTATCACCTTAAGGACTTAATAGGAGCTGAGCTGAGCATTTGTTCTACTATGATGTTCGGGTCAGCTTGTGCACAACTCGATTAATTTCAATGGATACTTGCTAGTTGCTACCTCTAACCAAGATATATTTTTTTGTTAGCTTTTGGATGCAATCTGGTGATTGCACATGGTGTAGATCAGTAGATGTAATGCTACACACAAAATAGAGGGATTCCACAACCTGTAATTATGTCTTTAATTGTTCATTCTTAATTCGAACCATCATTTAAAAAGGACTAATATCAGGGCTGAAATTTGGTGTATCGCAACCCAAGTCAGACGTTTGAGCTTGATGTTGGAACTAAAATTACGAATGTTATGGAATCAAACAACTTTAACTAGTTAAGTGATCGGGAGTATTACTTGTAGATGTTTAGTGTAGAGCAAATAAGTTTGGAGGATAAAGTAGAGACCTTAAGGAGCTCCAATGACTTCTGCATCCTCTACTCTTTTAATAAGCAGTATTTCACTTACGTTCTACAATTTCTAAAGTTGTTCAGGATGGACTCTGTGTGCGCTTGGTCAATCTTCCTAAGAAAATGAACGTTGATAAGGATCTACGAGTAGCTTTCAAAGGAGTTTCAGGAATAGTCAACATAGTTCCAGTCGTGACTGGGAACAAGAAGACCAGGAATCCTGTTTGTAAAGGCATGGCCTATATTAACTTTAAGTCCAAGGATGAAGCACAAAGGTAACGTTCATGGCTATACGTAAGAAATAAATGGGTGACGAGGTGCTTATGTAATCTTTACCTTTGCATTCATCCCTAAACTATAGAATGTTTGTTATTGTAGATTTGTGCAAATGTTTTCTGGACGAAGTATAAGTTTTGGTAAAGTTCAGAAGCAAATAAAGTGTGAGATGATAAATCCGGGATCACCTAAGTCCACAACTACACAGTCAGTTCATAAAATTAAGCATGTCCCTGAAAAAGAT</genome_strand>
        <mrna_strand>CTTCATTCTTCCCCAAAAAACCTCAGCTAAATCCCCAGATGCTTATACTGATAACTGGTAAACCCGAGTAGATAACGAAGAAGAAGAAGAAGTCGATATACCTGTTAATCCAAGAAAATTTGAGCTTTTTCCGAGTTCCATTTCAAGTTTTGCAGTTTCTGTTATAGAAATGCTTAGCTTAGGAAGTTATCCAAGGCAACCCCATTGTTGTGCCAGCCCAATTTCACAATGTATTCCTCTTATTTCCAAGATTCCTCGAACCCAGTTGTTTTTTACCTCAAATAAAGTGACCCATTTAAGGATTCGTTCTCTTATTGGGCAAAAACGAACTGGGAGTTGCGTTTTTGCACGCAAGGATGAAGAAAGAAGGGGGAATGGTGTGGTAGAAATGGAAGAAATTGAGGATTTTGATGATGACTATGAAGATGATGATCTTGATGTGGATGATTTTCTAGGGGATGAGGAAGATGTTGATGGAGATGATGATGATGATGATGA--TGATTATTCCATTGAGAAATATGAAGAAATGGTTAGAAAACAAGCCTCGTGGGTTTGGAGTAGATAAAGAGTATGATACTTCAGTTGAAGATAAGCTGATGGAAGAAATTGAGCAGAGTAGAAAAGCTCAGCTTGCTAATATCAATAAGCTCAAGAACAATCCAGTTAAAGCAAATACCAAACAAGTTCAGCAGGATAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGACTCTGTGTGCGCTTGGTCAATCTTCCTAAGAAAATGAACATTGATAAGGATCTACGAGTGGCTTTGAAAGGAGTTCCAGGAATAGTCAACATAGTTCCAGTTGTGACTGGGAACAAGAAGACCAGGAATCCTGTTTGCAAAGGCCTGGCCTATATTAACTTCAAGTCTAAGGATGAAGCACAAAG.......................................................................................................ATTTGTGCAAATGTTTTCTGGACGAAGTATAAGTTTTGGTAAGGTTCAGAAGCAAATAAAGTGTGAGATGATAAATCCCGGATCACCAAAGTCCACAACTACAGAGTCCGTTGATAAAATTAAGTATGTCCCTGAACAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6574" ref_strand="-" ref_description="SGN-M6574 C2_At1g10522 [cosii_markers]">
      <seq>tatggtggtccaggaacattactggttgttccattcatcgatatggctgataccataaacgacagaggtttaccaggaggaccacaagctgcacgcgctgcagtcaaatgggcacaaagtcatgttgacaacgattggaaagaatggaatagtggcaagaaaaagtaacttatcaaccaagatccagaaggaatggaatagtggcaagaaaagatgatccaacaaccaagatctgttgccagaagttttgatgcatgatgctatttttgtgttggtaactccctttacagtagtatgtgatagtataggactagaaattaaaggactatgtagagaaactagtcacaaaagtttctcattctcacgatggcactttgttatattaatgatgaaaccaaacgcaagcattcaacaggcaaaaggttcagatgtacttttcgtcaatgacaaaaaacgaaggcattcccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="33234" stop="32167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32934" g_stop="32467" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="469" polyA_stop="486"/>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-M6574" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6574" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32934" e_stop="32467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTGGTCCAGGAACATTACTGGTTGTTCCATTCATCGATATGGCTGATACCATAAACGACAGAGGTTTACCAGGAGGACCACAAGCTGCACGCGCTGCAGTCAAATGGGCACAAAGTCATGTTGACAACGATTGGAAAGAATGGAATAGTGGCAAGAAAAAGTAACTTATCAACCAAGATCCAGAAGGAATGGAATAGTGGCAAGAAAAGATGATCCAACAACCAAGATCTGTTGCCAGAAGTTTTGATGCATGATGCTATTTTTGTGTTGGTAACTCCCTTTACAGTAGTATGTGATAGTATAGGACTAGAAATTAAAGGACTATGTAGAGAAACTAGTCACAAAAGTTTCTCATTCTCACGATGGCACTTTGTTATATTAATGATGAAACCAAACGCAAGCATTCAACAGGCAAAAGGTTCAGATGTACTTTTCGTCAATGACAAAAAACGAAGGCATTCCCA</genome_strand>
        <mrna_strand>TATGGTGGTCCAGGAACATTACTGGTTGTTCCATTCATCGATATGGCTGATACCATAAACGACAGAGGTTTACCAGGAGGACCACAAGCTGCACGCGCTGCAGTCAAATGGGCACAAAGTCATGTTGACAACGATTGGAAAGAATGGAATAGTGGCAAGAAAAAGTAACTTATCAACCAAGATCCAGAAGGAATGGAATAGTGGCAAGAAAAGATGATCCAACAACCAAGATCTGTTGCCAGAAGTTTTGATGCATGATGCTATTTTTGTGTTGGTAACTCCCTTTACAGTAGTATGTGATAGTATAGGACTAGAAATTAAAGGACTATGTAGAGAAACTAGTCACAAAAGTTTCTCATTCTCACGATGGCACTTTGTTATATTAATGATGAAACCAAACGCAAGCATTCAACAGGCAAAAGGTTCAGATGTACTTTTCGTCAATGACAAAAAACGAAGGCATTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6573-2" ref_strand="+" ref_description="SGN-M6573-2 C2_At1g10520-2 [cosii_markers]">
      <seq>gattcttttaataagcctattggaacatcaaactcatcttcactttataagcctccggatttaaaccgaaatatcactcagatatttgggaagcttctcaacatatatagaggtaaaatatcttttcatagatttatttttgtagcttctttctcacgaatgcctttgagttaaaagtttaaactttcaaagtatgatacgatgactgatagttaattatagcactgggtgatgaccggagatcattcagctattataaagctataccagttattgagaaattgccattcaaaattgagagtgtggaccaggttaagcacctaccttctattggaaagtcgatgcaagatcattgttctttgactgcagattcaggagatagtgaccacaggaaagctgtccaaactggaacactttgagaaggatgaaaaggtaaaaacaatcagcttatttggagaggtttggggtattggtccagccactgccctaaaactttatgagaaaggacaccgaactcttgatgaactcagaaatgaggagtcactgactcattctcaaaggttaggtttgaaatattttgatgacatccaaaccaggattccacggcatgaggtcgaagagatggaacgtctgctacagaaagttggagaggaaattntgcctggtgtgattgttgtgtgtggagggtcatatagacgtggaaaggcttcttgtggtgatatggataattggtttactcatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="40082" stop="37707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39918" g_stop="39901" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39900" i_stop="39784" i_length="117">
            <donor d_prob="0.891" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39783" g_stop="39448" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="353" r_length="335" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39447" i_stop="39181" i_length="267">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39180" g_stop="39102" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="432" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39101" i_stop="38543" i_length="559">
            <donor d_prob="0.691" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38542" g_stop="38363" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="612" r_length="180" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38362" i_stop="38277" i_length="86">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38276" g_stop="38223" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="666" r_length="54" r_score="0.926"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38222" i_stop="38086" i_length="137">
            <donor d_prob="0.931" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38085" g_stop="38007" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="745" r_length="79" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-M6573-2" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6573-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39918" e_stop="39901"/>
          <exon e_start="39783" e_stop="39448"/>
          <exon e_start="39180" e_stop="39102"/>
          <exon e_start="38542" e_stop="38363"/>
          <exon e_start="38276" e_stop="38223"/>
          <exon e_start="38085" e_stop="38007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCTCTTAATAAGCCTGTAAGTTCAGCAGCAAATTGCCCTTGCTTAATATGTTCTCCTGAGCCAGAGGTACAGGTGTAGCTATGTGGACGATTCTCACCTGTTTCATCTATATTTCTACTATTATTTTACCAGGTTGGAACATCAGACTCATCTTCACTTTATAAGCCTCCGGATTTAAACCGAAATATCACTCAGATATTCGGGAAGCTTCTCAACATATATAGAGGTAAAATATCTTTTCATACATGTTATTTTTGTAGCTTTTCTCTCACAGATGCCTTTGAGTTAAAAGCTTAAACTTTCAAAGTATGATACAATGGCTGATAGTTTATTATAGCACTGGGTGATGACCGGAGATCATTCAGCTATTATAAAGCTATACCAGTTATTGAGAAACTGCCATTCAAAATTGAGAGTGTGGACCAGGTTAAGCACCTACCTTCTATTGGAAAGTCAATGCAAGATCATGTAAGTGAATTCCTCTATTTAAAGCCTTACTAGAAATATATTTATGTCACACCATTTCAAGTTGCTGTTTACGTGAGTGAGGTTGCCAGAGGTTGGCTTCTAGCTATTCGAACTTCGTGAAATGAGATTGATATGACAAGCGGAACCAATTATCCATTAAATCACTTTCTTGGATTTTGATTTCCCGATCATGAATACCTTTGCCTCCAGCTTACAGTTAAATCTACCGAATAGGAGGACAGTTAAATCTACTGAATAAGAGGATAGTGTTCTTTTACTGCAGATTCAGGAGATAGTGACCACAGGAAAGCTGTCCAAATTGGAACACTTTGAGAAGGATGAAAAGGTGATGTTATGGGAATCTTTCTTGTCAGAAGCTCTCAATATGTTTGCAGTAGCTCAAGTCACTTGTCAATAATCATTGCGAGATCTGTACCCGATTTGCATTGTTGTAGTGAATTGTGAAGAAGCAATATGTCAATCTTTTCTGAATTAGCTCTACTAATCGTTTGTGTGTGTGTGTTTTGCTCCTACATGTTATTAGACTCTGGCTCAATAATCAATCTTTGCTAATATGTTGATAGAAGTCAAAAGCATTCAAATTCATGCTTTTATGCCTTACTAGCATACTTCATATTCATATATTTTGTTCATTTTTTCTTTCTGTATCCTTCTGCTGATTCACATATGGAAGGAATTGAACTGCGACACTGTTTAGTATTGTATTTAAAATAGGGAAACGTAACAACATAAGCTTCATCTACATTCAGAGTTCTAAAATAATTTTGAAGCTGAAGAGCTAATTTTACCATAATTCGTTTATTATGATAACCAAACGTACATTATCCTGCTCTCTGGAACACTTATTGGCTTAATCTTCTTCTAACATTATCATGACTTTACAGGTAAAAACAATCAGCTTATTTGGAGAGGTTTGGGGTGTTGGTCCATCTACTGCCCTAAAACTTTATGAGAAAGGACACCGAACTCTTGATGACCTTAGAAATGAGGAGTCACTGACTCGTTCTCAAAGGATAGGGTTGAAATATTTTGATGACATCCAGACCAGGATTCAACGGCATGAGGTAGCCTATTATGCTTTGCAGTTTTTACTATCATGATTCATGACTACTTATTGTTTTTCTCTAAAGAGTAATGATTGATTATGTAGGTCAAAGAGATGGAACGTTTGCTACAGAAAGTTGGAGAAGAAATTTTGCCTGGTGTAAGGCTTTTGTCCAATTACTTGTTGAACATTTTTAACTATATTTTGGTTGTAAGTTTGGTCTATATGGTTGTGATATTGTTGAACTTGGCTACATAATAACATCCAACTTTTATATAATGAATCCCTTGCTTTAGGTGATTGTTGTGTGTGGAGGATCATATAGACGTGGAAAGGCTTCTTGCGGTGATATGGATATTGTTATTACTCATCCTG</genome_strand>
        <mrna_strand>GATTCTTTTAATAAGCCT.....................................................................................................................ATTGGAACATCAAACTCATCTTCACTTTATAAGCCTCCGGATTTAAACCGAAATATCACTCAGATATTTGGGAAGCTTCTCAACATATATAGAGGTAAAATATCTTTTCATAGAT-TTATTTTTGTAGCTTCTTTCTCACGAATGCCTTTGAGTTAAAAGTTTAAACTTTCAAAGTATGATACGATGACTGATAGTTAATTATAGCACTGGGTGATGACCGGAGATCATTCAGCTATTATAAAGCTATACCAGTTATTGAGAAATTGCCATTCAAAATTGAGAGTGTGGACCAGGTTAAGCACCTACCTTCTATTGGAAAGTCGATGCAAGATCAT...........................................................................................................................................................................................................................................................................TGTTCTTTGACTGCAGATTCAGGAGATAGTGACCACAGGAAAGCTGTCCAAACTGGAACACTTTGAGAAGGATGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAACAATCAGCTTATTTGGAGAGGTTTGGGGTATTGGTCCAGCCACTGCCCTAAAACTTTATGAGAAAGGACACCGAACTCTTGATGAACTCAGAAATGAGGAGTCACTGACTCATTCTCAAAGGTTAGGTTTGAAATATTTTGATGACATCCAAACCAGGATTCCACGGCATGAG......................................................................................GTCGAAGAGATGGAACGTCTGCTACAGAAAGTTGGAGAGGAAATTNTGCCTGGT.........................................................................................................................................GTGATTGTTGTGTGTGGAGGGTCATATAGACGTGGAAAGGCTTCTTGTGGTGATATGGATAATTGGTTTACTCATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6573" ref_strand="+" ref_description="SGN-M6573 C2_At1g10520 [cosii_markers]">
      <seq>tttgagaagaagactgtgatgacgcgaaagaaggttgaatctccgccgcgtgatcctaatggaatgttttccggtatggttgtcttctttgtcggaaccggagttatgtccctccggctacagatatggaagaggaaattgttgcaaatgggggctatatttaacgaccggtttactggaaatgtaactcatgtttttgcaaaggatgcaaatttgcttcttgagaaatttgataaagaacttctgattcgcaccaaagctaaatttctctcgtatcagtggctagaggacagcttaatacaaggagaaaaagcatctgaggatctgtatgtcttatccctgcaatcaggaggaggaaagtcccttagtcctaaagctgataatgacggtcattctgataatgacggtcattctagagttgcactaaagaaaagtcgaatatctgctgaagatgccaagaattcatgcccaagacacgttaatgacaataaagaccgtgttgatccacgagatactaaaagtgcctctttacttgcatcacactcttcaagcccagaagtgacaagtccagaggccattcattctcttaataagcctgttggaacatcagactcatcttcactttataagcctncggatttaaaccgaaatatcactcagatattcgggaagcttctcaacatatatagagcactgggtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="43299" stop="39390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42999" g_stop="42877" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42876" i_stop="42789" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42788" g_stop="42651" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="261" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42650" i_stop="40237" i_length="2414">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40236" g_stop="39901" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="597" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39900" i_stop="39784" i_length="117">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39783" g_stop="39690" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="691" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39689" i_stop="39579" i_length="111">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.377" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39578" g_stop="39567" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="703" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-M6573" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42999" e_stop="42877"/>
          <exon e_start="42788" e_stop="42651"/>
          <exon e_start="40236" e_stop="39901"/>
          <exon e_start="39783" e_stop="39690"/>
          <exon e_start="39578" e_stop="39567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGAAGAAGACTGTGATGACGCGAAAGAAGGTTGAATCTCCGCCGCGTGATCCTAATGGAATGTTTTCCGGTATGGTTGTCTTCTTTGTCGGAACCGGAGTTATGTCCCTCCGGCTACAGGTTTCAATCCACAATTTCTCTTCTTTTTTTTCAAATTTTTCCTTTTTCTTTTTCATAATTGTTTGAAATTTTTTTTTTTTGGTTGCAGATATGGAAGAGGAAATTGTTGCAAATGGGGGCTATATTTAACGACCGGTTTACTGGAAATGTAACTCATGTTTTTGCAAAGGATGCAAATTTGCTTCTTGAGAAATTTGATAAAGAACTTCTGATTCGCACCAAAGCTGTGAGCTTTATTAACTCTTATGCTTTGTAGACTCTTTAATTGAGACTTTTTGATGTTTTTTTAGGGATTAAATGAGTATTTATCATGTTGGTACAGCTACATGAGAACTAGTGTCTACTAGGAGCTTTTAGTTTGTTTGGATAGTATAGAAGATTGACTAGTAACAGTATAGTTAAATTTGTTTTTTTTTTCTTTTTGGTAACCTGGTGTCTATGTTAGCTTTGGGGAGTGGTGGTTGTGCGAGCAATATGTGAGATAGGACAATTGGTTGCATTAAGGAAGTTGCAAGAGAGGTATTGGGGGTTTCAAGGAGTAGCTTTGGAGGATATCTAGGGAATTTGTGGCGGAATGGAAGAAAATAAGACGGGTTAGTAAATTTTTTGGAGGGGAAGGACGAGGGGATAAGCGAGTGAATATGGAAAGGTATAAAGTGGTGAAGAAGGAGACAAAGTTGGTGGTTAGGATATCGAAGTCGACAACTTTTGATCGCTTGTATGGAAACTAGGGAACAAAGGAGGAGATAAGAAGTCGTACAGTCTAGCCAAGGAGAGAGAGGTGAAGGCACAAGACCTGGACCAAGTGCGTCAAAGATGAGGATGGCGAATTTTTGGTGGAGGAGACACTCATTAGACGAAAATGACATACATACTTCTATAAATTCTTGAATGAAACCTTAGGTGTCTATAGTACCTACTTGTGTCTGGTGGGCTATTTGGAGTGAAAGAAACCTTAGGTGTCATGAGAATATTCTTAACACTATTCAGAAAGTTAAAGAAAGTTGCATTAACATGTTTTTTTGGTGTAAAGAAGATGGTATAGAAGAAGTAGAGCAGTTGGTAGATTTTGTAGGATCTTTGTAATTATGGATTTAGCTTGTAACTTTTTGGAGGTAGCTAGCATACCCTTAATGCAGAAGAATACAACTTTAACTTTATCCAAAAAAAAAAAACTCTTGAATGAAGAGGAGGATAGAGACATTATGCTGGAGCTTTGGAGCATTCTAAAAGATGATAGGATTTTGGGTATTGAAGAGTTTAAAGGTGATATTCGTAGGATGAGTAGGGGAAGAGTGATCAGGCCATATGTTTGCCCATCCCTGAAATTCGAAGAAGTCTTTTATGGGACAGTCAAGGGCAAGAAGAAGATTCAAATCCACGATTCTACCATGCATGGGGTTTTGTCCCTAAGAGGTGAAAAATGGTTTCATTAGGGGGACACCAAAAGTCAATTTTGACATCCAAGGAACTACTAAGATCAAACTTGAATTTTTTCTTAGATTCTCCAGAAGTATTGTAGTCCCAAAACACTTAACCATGAGAGGAACCAGATCACAATCGGTGAAAGAATTCCTCAGAGAAATCAGAATCGATGGAAAGAGGAGAAGAAACAGTTCTTTTTCCTTTGTGTCTAGCACTCTTGCGAGTGGTTATAGGGGAGTACTTCTGTGATTTAGCCATGAGGAAAATTTCAAGATAGGAGAAATAGGAATTTTATGAAGAGTGAAGAAAGAAAAGGGACAAATATGGCAATTCAAGGGTTTGTGATGGGAAAGGACAAGACAGCAAAAAGGCATAATGATGATTATGGAAAGACGAGAGAAGGCAGCAAATAGGAAGAGTTCTTACAGAAAAGAGGGAAACGAATAATGAACTCACATTGAAAACATAAGGAAAGATACAGTCATTAATAAAAAAAAATCTAAAATAATTCCAAGAGATTCTCTGAGAGTGCAAAATCTTTCTTCAAGCAAGGGTCTTGTAAAAATATCAGCCAATTAAAATTCAGTGCTCACAAAAGAAAGTAAAGCATCACCGTTTATGATATGATCTCAAATAAAATGATGCGTATGCTTGGCCCTAGAATGATGGACGGGAGTTTTAGTCAGGCAAATAGCACTAGAACTTGAACTGGTTTAAAAGACAACTCCTAATTTTTAGTTGAGCATTATAGAATTCTCAGTGATAATTGAGTAAATGGATGTTTCACTAATAATATATCCTTCTCCATTTGTGAATATGCCTTCCTCTTTCGGACCAGTTGTATTCCAATTTATCTTTGTTCTTGATCCATTACTTTCTTGGAAGATTTTTGACCTTTCTTGCTGATATCATTCTTATCCTGCTGCTTCAAATTACTAATTTTTTGGATAAGCTGCTTTAAAGTAACATTTGTTATTTTAGGACAGTTGATTTTTCTAAACTTCTTCTATATTACTCCTAACCTTTTAGGAGTGGCTTATAATTTTTGTGATATATTTACGTACTTCCGAAATCCTTTCATATTCAATGGGCTTTAGTGACCTAAATATGTTGTTTTACACGAATTGCCTGTTTGACAGATGATGCATTTTCTAGTGATTGATAAAAAATATGTTTCTCCAACTATCTTGGTGATTGTTTTTCGTTTTCCTATAGAAATTTCTCTCGTATCAGTGGCTAGAGGACAGCTTAATACAAGGAGAAAAAGCATCTGAGGATCTGTATGTCTTATCCCTGCAATCAGGAGGAGGAAAGTCCCTTAGTCCTAAAGCTGATAATGACGGTCATTCTGATAATGACGGTCATTCTAGAGTTGCACTAAAGAAAAGTCGAATATCTGCTGAAGATGCCAAGAATTCATGCCCAAGACACGTTAATGACAATAAAGACCGTGTTGATCCACGAGATACTAAAAGTGCCTCTTTACTTGCATCACACTCTTCAAGCCCAGAAGTGACAAGTCCAGAGGCCATTCATTCTCTTAATAAGCCTGTAAGTTCAGCAGCAAATTGCCCTTGCTTAATATGTTCTCCTGAGCCAGAGGTACAGGTGTAGCTATGTGGACGATTCTCACCTGTTTCATCTATATTTCTACTATTATTTTACCAGGTTGGAACATCAGACTCATCTTCACTTTATAAGCCTCCGGATTTAAACCGAAATATCACTCAGATATTCGGGAAGCTTCTCAACATATATAGAGGTAAAATATCTTTTCATACATGTTATTTTTGTAGCTTTTCTCTCACAGATGCCTTTGAGTTAAAAGCTTAAACTTTCAAAGTATGATACAATGGCTGATAGTTTATTATAGCACTGGGTGATG</genome_strand>
        <mrna_strand>TTTGAGAAGAAGACTGTGATGACGCGAAAGAAGGTTGAATCTCCGCCGCGTGATCCTAATGGAATGTTTTCCGGTATGGTTGTCTTCTTTGTCGGAACCGGAGTTATGTCCCTCCGGCTACAG........................................................................................ATATGGAAGAGGAAATTGTTGCAAATGGGGGCTATATTTAACGACCGGTTTACTGGAAATGTAACTCATGTTTTTGCAAAGGATGCAAATTTGCTTCTTGAGAAATTTGATAAAGAACTTCTGATTCGCACCAAAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTCTCTCGTATCAGTGGCTAGAGGACAGCTTAATACAAGGAGAAAAAGCATCTGAGGATCTGTATGTCTTATCCCTGCAATCAGGAGGAGGAAAGTCCCTTAGTCCTAAAGCTGATAATGACGGTCATTCTGATAATGACGGTCATTCTAGAGTTGCACTAAAGAAAAGTCGAATATCTGCTGAAGATGCCAAGAATTCATGCCCAAGACACGTTAATGACAATAAAGACCGTGTTGATCCACGAGATACTAAAAGTGCCTCTTTACTTGCATCACACTCTTCAAGCCCAGAAGTGACAAGTCCAGAGGCCATTCATTCTCTTAATAAGCCT.....................................................................................................................GTTGGAACATCAGACTCATCTTCACTTTATAAGCCTNCGGATTTAAACCGAAATATCACTCAGATATTCGGGAAGCTTCTCAACATATATAGAG...............................................................................................................CACTGGGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6905" ref_strand="+" ref_description="SGN-M6905 C2_At1g59990 [cosii_markers]">
      <seq>ttaaatatgtggtttttgacgaggcagatatgctgctttgtggaagtttccagaatcaagtggtccgacttataaatatgcttcgctttgatgagaagcagttatctcgttctaaaaactctggagctgagatgtcatcaacttcagacttggaagagtttagggacctaaaagcagattatggtgaagatgcagatgaagatgaagatgaagatgaggatgaagatactgaagttggcgaagataaagcaaatctagaaacagataccaaggggttaaagagaagagattggcgaagagtgagaaaaatatatgagcggagcaagcagtacatttttgttgcagctacccttcctgaaaatgggaagagaactgctggaggagttttgaagcggatgtttcctgaagctacctgggttagtggaaattatcttcatcagcacagcccgaggttggagcagaggtggattgaagtttcagttgacacccaagtggacattctcataaatgctgtggaaaatgggaagtctatggcagatagtgttcctggagtgctccgaaccatggtctttgcaaataccgttgacgctgtggaagctgttgctaatatcttgacaggagctggacttgaatgtttccgctaccatagtgatagctctttggaggagcgcacaaagaatttacttgatttccaacagaaaggtggtgtttttgtgtgcacagatgctgcagcacgtggtattgatattccaaatgtttcacatgttattcaggcagagtttgctacgtctgctgtagatttcttgcacagggttggacgtacagctagagcaggccaacctggcctagttacgagtctatattcagaatcaaaccgtgatcttgttgctgccattcgtcatgcagaaaaaattgaagagccagtggagaaagcatttagcagaaaaaggagctttcgcaataaaatcaagaaaagaggcagagaagcttcctcccacatgaggtgaaaatgtgattttgtcttgggagtgagtttctatttgcatttgtttctccacactgtttgtattttagagtattattgtaatatccctttactgtaaaagaaattaattagttcagagtatttaatatgaaagttaacacatttcccagtcatgaagtgaagttgaatataaagaccacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="+" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="46827" stop="49624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47040" g_stop="47050" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47051" i_stop="47133" i_length="83">
            <donor d_prob="0.335" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47134" g_stop="47579" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="451" r_length="440" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47580" i_stop="47938" i_length="359">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47939" g_stop="48260" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="773" r_length="322" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48261" i_stop="48581" i_length="321">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48582" g_stop="48734" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="926" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48735" i_stop="49091" i_length="357">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49092" g_stop="49362" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="927" r_stop="1187" r_length="261" r_score="0.841"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="+" ref_id="SGN-M6905" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>1203</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47040" e_stop="47050"/>
          <exon e_start="47134" e_stop="47579"/>
          <exon e_start="47939" e_stop="48260"/>
          <exon e_start="48582" e_stop="48734"/>
          <exon e_start="49092" e_stop="49362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATATGTGGTAATATTTCTGGAGTTATTTAGATTTGGTTATGAGAAAGTGATTTCCCAATATTCATTCTTAGTTATTTTGGCGGTTTGTAGGTTTTTGATGAGGCAGATATGCTGCTTTGTGGAAGTTTCCAGAACCAAGTGGTCCGACTTATAAATATGCTTCGTTTTGATGAGAAGCAGTTATCTCGTTCTAAAAATTCTGGAGCTGAGATGTCATCTACTTCAGACTTGGAAGAGTTTAGGGACCTAAAAGCAGATTATGGTGAAGATGCAGATGAAGTTGAAGATGAAGATGAAGATGAGGATGAAGATACTGAAGTTGGCAAAGATAGAGCAAATCTAGAAACAGATACCAAGGGGCTAAAGAGAAGAGATTGGCGAAGAGTGAGAAAGATATATGAGCGGAGCAAGCAGTACATTTTTGTTGCAGCGACCCTTCCTGAAAATGGGAAGAGAACTGCTGGAGGAGTGTTGAAGCGGATGTTTCCTGAAGCTACCTGGGTTAGTGGAAATTATCTTCATCAGCACAGCCCGAGGTGCCACTTTTTTCTTTAGTCCATAATTTGTTTCTTTAAAGTATTCCTTGGGGGAGGGAGGTAATGCTGACAGAATGGATAAAATTTTCAAGTATTTGTCCATCCCTCACTTAAAAACAGGTTGGAAAATTGATTTACTAGGATCAGATCAAATATGGATTAATCAATATAACCAATCATGGAAAAGGGTAGAGTATGCATGTCCATATTATCCATGCTTCTCTGCAAATAATCCTCTGGATATCCAAGTTCTTCTTTTTGCGGTATCAGTACTTAAGTTCAATGGCTATCCTTGTAATAATTTTCTGAGGAGCATTTTAACTAGTATGGCTTTTATCTCCTCCCTGCTGTCACTTTAGGTTGGAGCAAAGGTGGATTGAAGTTTCAGTTGACACCCAAGTGGACATTCTCATAAATGCTGTGGAAAATGGGAATTCTATGGCAGATAGTAGTCCTGGAGTGCTCCGAACCATGGTCTTTGCAAATACTGTTGACGCTGTGGAAGCTGTTGCTAATATCTTGACAAGAGTTGGACTTGAATGTTTCCGTTACCATAGTGATAGCTCTTTGGAGGAGCGCACAAAGAATTTACTTGATTTCCAACAGAAAGGTGGTGTTTTTGTGTGCACGGATGCTGCAGCACGTGGTATTGACATTCCAAATGTTTCACATGTTATTCAGGTTTGTTTTCTTAAGTAAATACGTTGTTCTTATCTCAATCAGTTTCTGGTTGTTCTTTGATGCCTAATATTTTGGTTTAATTTATTAAAAAGTAGAACAGAGTCGTTTTTCTTTATGCTTTGTACCCAATACACCTTATTATGTCTCATTCACTAAAGAACATTTCTGCATTTTACTGCATTGCTGGGTTAATTGGCTACTTGTACATTGATTTTATTAGCGGAGTTACTTAACTTGTGATGCCTTTATTGGCCTTGTAGTTCCGTATGCATCTATATTGACGTGTTTTTACACTCAATTGTTTTCCCCTCCTCATTGTAGGCAGAGTTTGCCACATCTGCTGTAGATTTCTTGCACAGGGTTGGACGTACAGCTAGAGCAGGCCAACCTGGCCTTGTTACGAGTCTATATTCAGAATCAAACCGTGATCTAGTTGCTGCCATTCGTCATGCAGAAAAAATTGAAGAGCCAGTGGTACGTTCTATATCTTAAAACGCTTTAAGATAGTGACCTAAAGAAGCCTATGTCAGACTAGCCACATAGTTACCAACGCATAAATTTCATATCTTTTAGTGATAGAAGCGTTTGTTTGATTCTAGCGGTGAAATAGAGTCCTTTCAGGTCAGCTTGTAATTAGCTGATAAGCTTAAAGTGCTTGAAGTAGAAATGCTGAACCTGTTAATAAGCAGTTATCGATTGATTTCTAATGTTCTCGACACCTGCAAAAGTTGCTTATAACTTATCGACTTCAATTTCTCAACGGATTCTTTATGTAATCATCTTGAAGAGAACTAGTTCTGTTGTTATATTAAGATTGATATGTTTCCACAGGAGAAAGCATTTAGCAGAAAAAGGAGTTTTCGCAATAAAATCAAGAAAAGAGGCAGAGAAGC-T--TCACACATGAGGTGAAAAATGTGAATTTTGACTTGGGACTTGGGAGTGAGTTTCTATTTGCATTTGTTTTCTCCACACTGTTTGTATTTTATAGTGTTATTGTAATA------TACTGTAAAAGAAATTAATTAGTTCAGAGTATTTAATATGAAAGTTCACACATTTTCCCAGTCTCTTAATCATGAAGTGAAGTTGAATATAAAGATCACAC</genome_strand>
        <mrna_strand>TTAAATATGTG...................................................................................GTTTTTGACGAGGCAGATATGCTGCTTTGTGGAAGTTTCCAGAATCAAGTGGTCCGACTTATAAATATGCTTCGCTTTGATGAGAAGCAGTTATCTCGTTCTAAAAACTCTGGAGCTGAGATGTCATCAACTTCAGACTTGGAAGAGTTTAGGGACCTAAAAGCAGATTATGGTGAAGATGC--A-G-A--TGAAGATGAAGATGAAGATGAGGATGAAGATACTGAAGTTGGCGAAGATAAAGCAAATCTAGAAACAGATACCAAGGGGTTAAAGAGAAGAGATTGGCGAAGAGTGAGAAAAATATATGAGCGGAGCAAGCAGTACATTTTTGTTGCAGCTACCCTTCCTGAAAATGGGAAGAGAACTGCTGGAGGAGTTTTGAAGCGGATGTTTCCTGAAGCTACCTGGGTTAGTGGAAATTATCTTCATCAGCACAGCCCGAG.......................................................................................................................................................................................................................................................................................................................................................................GTTGGAGCAGAGGTGGATTGAAGTTTCAGTTGACACCCAAGTGGACATTCTCATAAATGCTGTGGAAAATGGGAAGTCTATGGCAGATAGTGTTCCTGGAGTGCTCCGAACCATGGTCTTTGCAAATACCGTTGACGCTGTGGAAGCTGTTGCTAATATCTTGACAGGAGCTGGACTTGAATGTTTCCGCTACCATAGTGATAGCTCTTTGGAGGAGCGCACAAAGAATTTACTTGATTTCCAACAGAAAGGTGGTGTTTTTGTGTGCACAGATGCTGCAGCACGTGGTATTGATATTCCAAATGTTTCACATGTTATTCAG.................................................................................................................................................................................................................................................................................................................................GCAGAGTTTGCTACGTCTGCTGTAGATTTCTTGCACAGGGTTGGACGTACAGCTAGAGCAGGCCAACCTGGCCTAGTTACGAGTCTATATTCAGAATCAAACCGTGATCTTGTTGCTGCCATTCGTCATGCAGAAAAAATTGAAGAGCCAGTG.....................................................................................................................................................................................................................................................................................................................................................................GAGAAAGCATTTAGCAGAAAAAGGAGCTTTCGCAATAAAATCAAGAAAAGAGGCAGAGAAGCTTCCTCCCACATGAGGTG-AAAATGTG-ATTTTG---T----CTTGGGAGTGAGTTTCTATTTGCATTTG-TTTCTCCACACTGTTTGTATTTTAGAGTATTATTGTAATATCCCTTTACTGTAAAAGAAATTAATTAGTTCAGAGTATTTAATATGAAAGTTAACACA-TTTCCCAG--------TCATGAAGTGAAGTTGAATATAAAGACCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M384-R" ref_strand="-" ref_description="SGN-M384-R CT101-R [rflp_markers_reverse]">
      <seq>aagtagtcaatgaatctttgatgacactcaatttagggttcaatgaaattagagatgaaggagctttttctatcgctcaagcacttaaagcaaatgaagatgttagactcacatctttaaatcttgccagtaacttcctcaccaaattaggacagacagctctcacagatgcaagagaccatgtatttgagatgactgagaaggagcttgctgttatgttttaaaataccacattccttagatcagatttatttttctccctgctttcattcttgaggttggggcagggctgcataggtgagtatttttttttcttttaccaatgatattcctaagagtccgacctcagctcccctttgtgactgaatcattttgagcggggggacggtggaaattttgataaataacattccgtttctgaaacattagtggcaagtatatagagattacttctattcaccatttcatattcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="57178" stop="45868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56878" g_stop="56826" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56825" i_stop="56740" i_length="86">
            <donor d_prob="0.680" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56739" g_stop="56638" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="155" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56637" i_stop="56544" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.563" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56543" g_stop="56226" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="473" r_length="318" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56225" i_stop="55997" i_length="229">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55996" g_stop="55983" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="487" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-M384-R" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M384-R" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56878" e_stop="56826"/>
          <exon e_start="56739" e_stop="56638"/>
          <exon e_start="56543" e_stop="56226"/>
          <exon e_start="55996" e_stop="55983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAGTCAATGAATCTTTGATGACACTCAATTTAGGGTTCAATGAAATTAGAGTATGCAACTCTTTTCCAGTACAAGTACAACCACCTGTCTTGATAAAGGTATCATCTTGTATTAACTTAGTTTCTCTTGCGCACAGGATGAAGGAGCTTTTTCTATCGCTCAAGCACTTAAAGCAAATGAAGATGTTAGACTCACATCTTTAAATCTTGCCAGTAACTTCCTCACCAAATTAGGACAGGTAACTTCAAATGATATAACATTACTCTCTTATTTTACCTGTTTTACGCGATTTTTTGTTCCTTACAATATCCGGACGGATTTCCGAATTTCAGACAGCTCTCACAGATGCAAGAGACCATGTATTTGAGATGACTGAGAAGGAGCTTGCTGTTATGTTCTAAAATACCACATTCCTTAGATCAGATTTATTTTTCTCCCTGCTTTCATTCTTGAGGTTGGGGCAGGGCTGCATAGGTGAGTATTTTTTTTTCTTTTACCAATGATATTCCTAAGAGTCCGACCTCAGCTCCCCTTTGTGACTGAATCATTTTGAGCGGGGGGACGGTGGAAATTTTGATAAATAACATTCCGTTTCTGAAACATTAGTGGCAAGTATATAGAGATTACTTCTATTCACCATTTCATATTCATTCTCTAGTTTGAAACTCTTGTGAGTTGTTCTTTTACGCTTATTTTCGTGTTGCAGGACAGAATTAACTTACTTTTAGTTTGTCATTCAACTGTTTTAAAGTAATATGATAATTGTGCTGTGTTCTAAATGCTAATCCATCCCCTCGAAAAAAAATACAGAGGGATATGTTAAATTTATTTGGTCATTTTAGTAGTTTGAAAAAATTTACATGAACTTGTAAAGTTTTCAAAAAACAAAAAAA</genome_strand>
        <mrna_strand>AAGTAGTCAATGAATCTTTGATGACACTCAATTTAGGGTTCAATGAAATTAGA......................................................................................GATGAAGGAGCTTTTTCTATCGCTCAAGCACTTAAAGCAAATGAAGATGTTAGACTCACATCTTTAAATCTTGCCAGTAACTTCCTCACCAAATTAGGACAG..............................................................................................ACAGCTCTCACAGATGCAAGAGACCATGTATTTGAGATGACTGAGAAGGAGCTTGCTGTTATGTTTTAAAATACCACATTCCTTAGATCAGATTTATTTTTCTCCCTGCTTTCATTCTTGAGGTTGGGGCAGGGCTGCATAGGTGAGTATTTTTTTTTCTTTTACCAATGATATTCCTAAGAGTCCGACCTCAGCTCCCCTTTGTGACTGAATCATTTTGAGCGGGGGGACGGTGGAAATTTTGATAAATAACATTCCGTTTCTGAAACATTAGTGGCAAGTATATAGAGATTACTTCTATTCACCATTTCATATTCA.....................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M384-F" ref_strand="+" ref_description="SGN-M384-F CT101-F [rflp_markers_forward]">
      <seq>cggaattcctttttttttttttttttttgaatatgaaatgctgaaaaaaaattcaaccttgcgtgttcttgaactaaacaataatctgattgactattctggattttcaggtcttgctggatcacttcttgagaataaaactttacaatccttgcatctcaacggcaattatggtggtgctttaggggctgcagcactggctaaaggcttggagagcaataagtccttgagggaactttatttgcaggggaactctgttggcgatgaaggagtacgggcattaatctctggcctgtctttgcgtaaagggaaacttgtcttacttgaccttgccaacaattcaattactgcaagaggagcatttcatgttgccgaatacgtcaaaaaaagcaaaagcttactgtggttgaatctctatatgaatgacattaaagatgagggagctgaaaagattgcagaagctttgaaggagaaccgctcgataactaatgttgatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0191B01-frBK6/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0191B01.1" temp_strand="-" temp_description="C05HBa0191B01.1  AC187148.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0191B01 sequenced_by:iitg upload_account_name:india (Contig41), complete sequence">
        <position start="59498" stop="57249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59198" g_stop="59132" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="100" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59131" i_stop="59039" i_length="93">
            <donor d_prob="0.709" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59038" g_stop="58977" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="162" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58976" i_stop="58768" i_length="209">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58767" g_stop="58698" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="232" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58697" i_stop="58186" i_length="512">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58185" g_stop="58110" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="308" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58109" i_stop="58013" i_length="97">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58012" g_stop="57882" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="439" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57881" i_stop="57610" i_length="272">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57609" g_stop="57550" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="499" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="28" polyA_stop="9"/>
      <MATCH_line gen_id="C05HBa0191B01.1" gen_strand="-" ref_id="SGN-M384-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0191B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M384-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59198" e_stop="59132"/>
          <exon e_start="59038" e_stop="58977"/>
          <exon e_start="58767" e_stop="58698"/>
          <exon e_start="58185" e_stop="58110"/>
          <exon e_start="58012" e_stop="57882"/>
          <exon e_start="57609" e_stop="57550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATGCTGAAAAAAAATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCTGTATGTTATTATGCAGAACTTGTGATTTGTATTTCCTAGTTATTATCATCTCGGTTTCTGAAGGAAAACATGTTTGATTTGGATATGGAATAGGGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAAGTAAGCAAAATTTGTTCTGCTGTCTTCTGTGCCCATCCTCATTTGTCATATGTCAAACGTAGCAGTTAATTATTTGTTTTTGCTTTATTGGTTTGGAGGGGGAGGGTGGGGGTGGGGGAGAAAGACGTGGATTTTAATTTGTGAGGGAAGGCATATTAATTTTTATTTCCCTTATATCTTTTAATTATGTGCTTTAATTAACTGTTCAGCGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGGGTATATTTCTAATCAATTCCTTCCTCCCACTGTGACCCTTCGCCTTTTGCTCTTTTTTCTGTTCTTGTAATTTGACTTAGCAAATAATTGAGCTTTTTGTTAGCCTTGATATCTTGCTTCTGTGTCATTGCAATGTTTCTTGTTATTCAACTTCTGCACTCATATTTCCTTCCTTTTTAATTTTTTTTGGAAACAACCTCCCTACCTCTACAAGGTATGAGTAAGGTCTTGTTGTTGTTATTCATGTTTCCATTTGATTGTATAGAAGAGCTTTTCTTTTCAAATTTTTCGATTTCCTCTGTGTCTGCTGACACTGTGATTAACTGTGAAATGCCCTCATGTTATTAAATAAACTTCTTTCGGCGGTTTCATAATGTTCCTCACCAACAATCCGAGGTTGAAGCTAGATCTGTTCTGCCCAAAATGGGAATGGGCTACTATTTACATATTACTGTATATCATAAACATGCACCTGCTATTCAAATGTGTTTGAAAAGATTTTTTATATGCAGGAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTGTCTTTGCGTAAAGGTTTGCTTATTGGATATCATTAACCATTCTCTTTAAACATATATTGGCGTTGTGTCCTTTGCATCTTTTTTGAAAGGTCACCATTATATGTCTGCAGGGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCAAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATTAAAGATGAGGTAATTGAACCACTTAAAACTTTCACAGTTTTCTTCCTTTATTATGTAAAAGACTCTTCTCAGCTAACCAAGCTTTTCACTTGAGAAACCAAACGTGTCCATTTTTGCATAGACGATGTATTTATTTTATCCACAGTTATATTTGAAGGATAAAGTTTAACCTGTCCCCATAAATAAGGTATTTGATTTCTTACGTCGCAGATCCAGACTCGATCTCTTGATATGCATTGACTTTCCCTTCTTTTTTTCTCCATTTACATCATATCCATCAGGGAGCTGAAAAGATTGCAGAAGCTTTGAAGGAGAACCGCTCGATAACTAATGTTGATCTT</genome_strand>
        <mrna_strand>TGAAATGCTGAAAAAAAATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCT.............................................................................................GGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAA.................................................................................................................................................................................................................CGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTGTCTTTGCGTAAAG.................................................................................................GGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCAAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATTAAAGATGAG................................................................................................................................................................................................................................................................................GGAGCTGAAAAGATTGCAGAAGCTTTGAAGGAGAACCGCTCGATAACTAATGTTGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="15450" PGL_stop="17258"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15450" e_stop="16158"/>
            <exon e_start="16815" e_stop="16871"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15450" e_stop="16158" e_length="709"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16159" i_stop="16814" i_length="656"/>
          </intron>
          <exon e_serial="2" e_score="0.930">
            <gDNA_exon_boundary e_start="16815" e_stop="16871" e_length="57"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15450" stop="16158"/>
              <exon start="16815" stop="16871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7011" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCTTTTACTCTTCTTCATCTTCATTCTTCCCCAAAAAACCTCAGCTTAATCCCCAGATGCTTATACTGATAACTGATAAATCCAAGTAGATAACGAAGAAGAAGAAGAAGATATACCTGTTAATCCCAGAAGATTTGAGCTTTTTCCGAGTTCCATTTCAAGTTTTGCAGTTTCTGTTATAGAAATGCTTAGCTTAGGAAGTTATCCAAGGCAACCCCATTGTTGTGCCAGCACAATTTCACAATGTCTTCCTCTTTTTTGCAAGATTCCTCAACCCCAATTGTTTTTTACTTCAAATACAGTGACCCATTTAAGGATTCGTTCTCTTATTGAGCAAAAACGAACTGGGGTGTGCGTTTTTGCACGCAAGGATGAAGAAAAAAGGGGGAATAGTGTGGTAGAAATGGAAGAAATTGAGGATTTTGATGATGACTATGACGACGACGACGATGATTTTCTAGGGGATGAGGAAGAGGTTGACGGAGACGACGACGACGATGATGAGGTGATTATTCCATTAAGAAATATGAAGAAATGGTTAGAAAACAAGCCGCGTGGGTTTGGAGTAGATAAAGAGTATGATACTTCAGTTGAAGATAAGCTGATGGAAGAAATTGAACAGAGTAGAAAAGCTCAGCTTGCTAATATCAATAAGCTCAAAAACAATCCAGTTAAAGCAAATACCAAACAAGTTCAGCAGGATAAAG : TTGTTCAGGATGGACTCTGTGTGCGCTTGGTCAATCTTCCTAAGAAAATGAACGTTG</gDNA_template>
            <first_frame> N  L  L  L  F  F  I  F  I  L  P  Q  K  T  S  A  *  S  P  D  A  Y  T  D  N  *  *  I  Q  V  D  N  E  E  E  E  E  D  I  P  V  N  P  R  R  F  E  L  F  P  S  S  I  S  S  F  A  V  S  V  I  E  M  L  S  L  G  S  Y  P  R  Q  P  H  C  C  A  S  T  I  S  Q  C  L  P  L  F  C  K  I  P  Q  P  Q  L  F  F  T  S  N  T  V  T  H  L  R  I  R  S  L  I  E  Q  K  R  T  G  V  C  V  F  A  R  K  D  E  E  K  R  G  N  S  V  V  E  M  E  E  I  E  D  F  D  D  D  Y  D  D  D  D  D  D  F  L  G  D  E  E  E  V  D  G  D  D  D  D  D  D  E  V  I  I  P  L  R  N  M  K  K  W  L  E  N  K  P  R  G  F  G  V  D  K  E  Y  D  T  S  V  E  D  K  L  M  E  E  I  E  Q  S  R  K  A  Q  L  A  N  I  N  K  L  K  N  N  P  V  K  A  N  T  K  Q  V  Q  Q  D  K   : V  V  Q  D  G  L  C  V  R  L  V  N  L  P  K  K  M  N  V  </first_frame>
            <second_frame>  I  F  Y  S  S  S  S  S  F  F  P  K  K  P  Q  L  N  P  Q  M  L  I  L  I  T  D  K  S  K  *  I  T  K  K  K  K  K  I  Y  L  L  I  P  E  D  L  S  F  F  R  V  P  F  Q  V  L  Q  F  L  L  *  K  C  L  A  *  E  V  I  Q  G  N  P  I  V  V  P  A  Q  F  H  N  V  F  L  F  F  A  R  F  L  N  P  N  C  F  L  L  Q  I  Q  *  P  I  *  G  F  V  L  L  L  S  K  N  E  L  G  C  A  F  L  H  A  R  M  K  K  K  G  G  I  V  W  *  K  W  K  K  L  R  I  L  M  M  T  M  T  T  T  T  M  I  F  *  G  M  R  K  R  L  T  E  T  T  T  T  M  M  R  *  L  F  H  *  E  I  *  R  N  G  *  K  T  S  R  V  G  L  E  *  I  K  S  M  I  L  Q  L  K  I  S  *  W  K  K  L  N  R  V  E  K  L  S  L  L  I  S  I  S  S  K  T  I  Q  L  K  Q  I  P  N  K  F  S  R  I  K  :  L  F  R  M  D  S  V  C  A  W  S  I  F  L  R  K  *  T  L </second_frame>
            <third_frame>   S  F  T  L  L  H  L  H  S  S  P  K  N  L  S  L  I  P  R  C  L  Y  *  *  L  I  N  P  S  R  *  R  R  R  R  R  R  Y  T  C  *  S  Q  K  I  *  A  F  S  E  F  H  F  K  F  C  S  F  C  Y  R  N  A  *  L  R  K  L  S  K  A  T  P  L  L  C  Q  H  N  F  T  M  S  S  S  F  L  Q  D  S  S  T  P  I  V  F  Y  F  K  Y  S  D  P  F  K  D  S  F  S  Y  *  A  K  T  N  W  G  V  R  F  C  T  Q  G  *  R  K  K  G  E  *  C  G  R  N  G  R  N  *  G  F  *  *  *  L  *  R  R  R  R  *  F  S  R  G  *  G  R  G  *  R  R  R  R  R  R  *  *  G  D  Y  S  I  K  K  Y  E  E  M  V  R  K  Q  A  A  W  V  W  S  R  *  R  V  *  Y  F  S  *  R  *  A  D  G  R  N  *  T  E  *  K  S  S  A  C  *  Y  Q  *  A  Q  K  Q  S  S  *  S  K  Y  Q  T  S  S  A  G  *  S :   C  S  G  W  T  L  C  A  L  G  Q  S  S  *  E  N  E  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15531" stop="16158"/>
                    <exon start="16815" stop="16870"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQVDNEEEEEDIPVNPRRFELFPSSISSFAVSVIEMLSLGSYPRQPHCCASTISQCLPLFCKIPQPQLFFTSNTVTHLRIRSLIEQKRTGVCVFARKDEEKRGNSVVEMEEIEDFDDDYDDDDDDFLGDEEEVDGDDDDDDEVIIPLRNMKKWLENKPRGFGVDKEYDTSVEDKLMEEIEQSRKAQLANINKLKNNPVKANTKQVQQDKVVQDGLCVRLVNLPKKMNV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15470" e_stop="16158"/>
            <exon e_start="16823" e_stop="17013"/>
            <exon e_start="17117" e_stop="17258"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.859" e_score="0.913"/>
          <exon-intron don_prob="0.564" acc_prob="0.451" e_score="0.953"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="15470" e_stop="16158" e_length="689"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.859">
            <gDNA_intron_boundary i_start="16159" i_stop="16822" i_length="664"/>
          </intron>
          <exon e_serial="2" e_score="0.953">
            <gDNA_exon_boundary e_start="16823" e_stop="17013" e_length="191"/>
          </exon>
          <intron i_serial="2" don_prob="0.564" acc_prob="0.451">
            <gDNA_intron_boundary i_start="17014" i_stop="17116" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.944">
            <gDNA_exon_boundary e_start="17117" e_stop="17258" e_length="142"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15470" stop="16158"/>
              <exon start="16823" stop="17013"/>
              <exon start="17117" stop="17258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7011-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCATTCTTCCCCAAAAAACCTCAGCTTAATCCCCAGATGCTTATACTGATAACTGATAAATCCAAGTAGATAACGAAGAAGAAGAAGAAGATATACCTGTTAATCCCAGAAGATTTGAGCTTTTTCCGAGTTCCATTTCAAGTTTTGCAGTTTCTGTTATAGAAATGCTTAGCTTAGGAAGTTATCCAAGGCAACCCCATTGTTGTGCCAGCACAATTTCACAATGTCTTCCTCTTTTTTGCAAGATTCCTCAACCCCAATTGTTTTTTACTTCAAATACAGTGACCCATTTAAGGATTCGTTCTCTTATTGAGCAAAAACGAACTGGGGTGTGCGTTTTTGCACGCAAGGATGAAGAAAAAAGGGGGAATAGTGTGGTAGAAATGGAAGAAATTGAGGATTTTGATGATGACTATGACGACGACGACGATGATTTTCTAGGGGATGAGGAAGAGGTTGACGGAGACGACGACGACGATGATGAGGTGATTATTCCATTAAGAAATATGAAGAAATGGTTAGAAAACAAGCCGCGTGGGTTTGGAGTAGATAAAGAGTATGATACTTCAGTTGAAGATAAGCTGATGGAAGAAATTGAACAGAGTAGAAAAGCTCAGCTTGCTAATATCAATAAGCTCAAAAACAATCCAGTTAAAGCAAATACCAAACAAGTTCAGCAGGATAAAG : GATGGACTCTGTGTGCGCTTGGTCAATCTTCCTAAGAAAATGAACGTTGATAAGGATCTACGAGTAGCTTTCAAAGGAGTTTCAGGAATAGTCAACATAGTTCCAGTCGTGACTGGGAACAAGAAGACCAGGAATCCTGTTTGTAAAGGCATGGCCTATATTAACTTTAAGTCCAAGGATGAAGCACAAAG : ATTTGTGCAAATGTTTTCTGGACGAAGTATAAGTTTTGGTAAAGTTCAGAAGCAAATAAAGTGTGAGATGATAAATCCGGGATCACCTAAGTCCACAACTACACAGTCAGTTCATAAAATTAAGCATGTCCCTGAAAAAGAT</gDNA_template>
            <first_frame> L  H  S  S  P  K  N  L  S  L  I  P  R  C  L  Y  *  *  L  I  N  P  S  R  *  R  R  R  R  R  R  Y  T  C  *  S  Q  K  I  *  A  F  S  E  F  H  F  K  F  C  S  F  C  Y  R  N  A  *  L  R  K  L  S  K  A  T  P  L  L  C  Q  H  N  F  T  M  S  S  S  F  L  Q  D  S  S  T  P  I  V  F  Y  F  K  Y  S  D  P  F  K  D  S  F  S  Y  *  A  K  T  N  W  G  V  R  F  C  T  Q  G  *  R  K  K  G  E  *  C  G  R  N  G  R  N  *  G  F  *  *  *  L  *  R  R  R  R  *  F  S  R  G  *  G  R  G  *  R  R  R  R  R  R  *  *  G  D  Y  S  I  K  K  Y  E  E  M  V  R  K  Q  A  A  W  V  W  S  R  *  R  V  *  Y  F  S  *  R  *  A  D  G  R  N  *  T  E  *  K  S  S  A  C  *  Y  Q  *  A  Q  K  Q  S  S  *  S  K  Y  Q  T  S  S  A  G  *  R :   M  D  S  V  C  A  W  S  I  F  L  R  K  *  T  L  I  R  I  Y  E  *  L  S  K  E  F  Q  E  *  S  T  *  F  Q  S  *  L  G  T  R  R  P  G  I  L  F  V  K  A  W  P  I  L  T  L  S  P  R  M  K  H  K   : D  L  C  K  C  F  L  D  E  V  *  V  L  V  K  F  R  S  K  *  S  V  R  *  *  I  R  D  H  L  S  P  Q  L  H  S  Q  F  I  K  L  S  M  S  L  K  K   </first_frame>
            <second_frame>  F  I  L  P  Q  K  T  S  A  *  S  P  D  A  Y  T  D  N  *  *  I  Q  V  D  N  E  E  E  E  E  D  I  P  V  N  P  R  R  F  E  L  F  P  S  S  I  S  S  F  A  V  S  V  I  E  M  L  S  L  G  S  Y  P  R  Q  P  H  C  C  A  S  T  I  S  Q  C  L  P  L  F  C  K  I  P  Q  P  Q  L  F  F  T  S  N  T  V  T  H  L  R  I  R  S  L  I  E  Q  K  R  T  G  V  C  V  F  A  R  K  D  E  E  K  R  G  N  S  V  V  E  M  E  E  I  E  D  F  D  D  D  Y  D  D  D  D  D  D  F  L  G  D  E  E  E  V  D  G  D  D  D  D  D  D  E  V  I  I  P  L  R  N  M  K  K  W  L  E  N  K  P  R  G  F  G  V  D  K  E  Y  D  T  S  V  E  D  K  L  M  E  E  I  E  Q  S  R  K  A  Q  L  A  N  I  N  K  L  K  N  N  P  V  K  A  N  T  K  Q  V  Q  Q  D  K   : G  W  T  L  C  A  L  G  Q  S  S  *  E  N  E  R  *  *  G  S  T  S  S  F  Q  R  S  F  R  N  S  Q  H  S  S  S  R  D  W  E  Q  E  D  Q  E  S  C  L  *  R  H  G  L  Y  *  L  *  V  Q  G  *  S  T  K  :  I  C  A  N  V  F  W  T  K  Y  K  F  W  *  S  S  E  A  N  K  V  *  D  D  K  S  G  I  T  *  V  H  N  Y  T  V  S  S  *  N  *  A  C  P  *  K  R  </second_frame>
            <third_frame>   S  F  F  P  K  K  P  Q  L  N  P  Q  M  L  I  L  I  T  D  K  S  K  *  I  T  K  K  K  K  K  I  Y  L  L  I  P  E  D  L  S  F  F  R  V  P  F  Q  V  L  Q  F  L  L  *  K  C  L  A  *  E  V  I  Q  G  N  P  I  V  V  P  A  Q  F  H  N  V  F  L  F  F  A  R  F  L  N  P  N  C  F  L  L  Q  I  Q  *  P  I  *  G  F  V  L  L  L  S  K  N  E  L  G  C  A  F  L  H  A  R  M  K  K  K  G  G  I  V  W  *  K  W  K  K  L  R  I  L  M  M  T  M  T  T  T  T  M  I  F  *  G  M  R  K  R  L  T  E  T  T  T  T  M  M  R  *  L  F  H  *  E  I  *  R  N  G  *  K  T  S  R  V  G  L  E  *  I  K  S  M  I  L  Q  L  K  I  S  *  W  K  K  L  N  R  V  E  K  L  S  L  L  I  S  I  S  S  K  T  I  Q  L  K  Q  I  P  N  K  F  S  R  I  K  :  D  G  L  C  V  R  L  V  N  L  P  K  K  M  N  V  D  K  D  L  R  V  A  F  K  G  V  S  G  I  V  N  I  V  P  V  V  T  G  N  K  K  T  R  N  P  V  C  K  G  M  A  Y  I  N  F  K  S  K  D  E  A  Q  R :   F  V  Q  M  F  S  G  R  S  I  S  F  G  K  V  Q  K  Q  I  K  C  E  M  I  N  P  G  S  P  K  S  T  T  T  Q  S  V  H  K  I  K  H  V  P  E  K  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15531" stop="16158"/>
                    <exon start="16823" stop="16857"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQVDNEEEEEDIPVNPRRFELFPSSISSFAVSVIEMLSLGSYPRQPHCCASTISQCLPLFCKIPQPQLFFTSNTVTHLRIRSLIEQKRTGVCVFARKDEEKRGNSVVEMEEIEDFDDDYDDDDDDFLGDEEEVDGDDDDDDEVIIPLRNMKKWLENKPRGFGVDKEYDTSVEDKLMEEIEQSRKAQLANINKLKNNPVKANTKQVQQDKGWTLCALGQSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="32934" PGL_stop="32467"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32934" e_stop="32467"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32934" e_stop="32467" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32934" stop="32467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6574" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATGGTGGTCCAGGAACATTACTGGTTGTTCCATTCATCGATATGGCTGATACCATAAACGACAGAGGTTTACCAGGAGGACCACAAGCTGCACGCGCTGCAGTCAAATGGGCACAAAGTCATGTTGACAACGATTGGAAAGAATGGAATAGTGGCAAGAAAAAGTAACTTATCAACCAAGATCCAGAAGGAATGGAATAGTGGCAAGAAAAGATGATCCAACAACCAAGATCTGTTGCCAGAAGTTTTGATGCATGATGCTATTTTTGTGTTGGTAACTCCCTTTACAGTAGTATGTGATAGTATAGGACTAGAAATTAAAGGACTATGTAGAGAAACTAGTCACAAAAGTTTCTCATTCTCACGATGGCACTTTGTTATATTAATGATGAAACCAAACGCAAGCATTCAACAGGCAAAAGGTTCAGATGTACTTTTCGTCAATGACAAAAAACGAAGGCATTCCCA</gDNA_template>
            <first_frame> Y  G  G  P  G  T  L  L  V  V  P  F  I  D  M  A  D  T  I  N  D  R  G  L  P  G  G  P  Q  A  A  R  A  A  V  K  W  A  Q  S  H  V  D  N  D  W  K  E  W  N  S  G  K  K  K  *  L  I  N  Q  D  P  E  G  M  E  *  W  Q  E  K  M  I  Q  Q  P  R  S  V  A  R  S  F  D  A  *  C  Y  F  C  V  G  N  S  L  Y  S  S  M  *  *  Y  R  T  R  N  *  R  T  M  *  R  N  *  S  Q  K  F  L  I  L  T  M  A  L  C  Y  I  N  D  E  T  K  R  K  H  S  T  G  K  R  F  R  C  T  F  R  Q  *  Q  K  T  K  A  F  P </first_frame>
            <second_frame>  M  V  V  Q  E  H  Y  W  L  F  H  S  S  I  W  L  I  P  *  T  T  E  V  Y  Q  E  D  H  K  L  H  A  L  Q  S  N  G  H  K  V  M  L  T  T  I  G  K  N  G  I  V  A  R  K  S  N  L  S  T  K  I  Q  K  E  W  N  S  G  K  K  R  *  S  N  N  Q  D  L  L  P  E  V  L  M  H  D  A  I  F  V  L  V  T  P  F  T  V  V  C  D  S  I  G  L  E  I  K  G  L  C  R  E  T  S  H  K  S  F  S  F  S  R  W  H  F  V  I  L  M  M  K  P  N  A  S  I  Q  Q  A  K  G  S  D  V  L  F  V  N  D  K  K  R  R  H  S   </second_frame>
            <third_frame>   W  W  S  R  N  I  T  G  C  S  I  H  R  Y  G  *  Y  H  K  R  Q  R  F  T  R  R  T  T  S  C  T  R  C  S  Q  M  G  T  K  S  C  *  Q  R  L  E  R  M  E  *  W  Q  E  K  V  T  Y  Q  P  R  S  R  R  N  G  I  V  A  R  K  D  D  P  T  T  K  I  C  C  Q  K  F  *  C  M  M  L  F  L  C  W  *  L  P  L  Q  *  Y  V  I  V  *  D  *  K  L  K  D  Y  V  E  K  L  V  T  K  V  S  H  S  H  D  G  T  L  L  Y  *  *  *  N  Q  T  Q  A  F  N  R  Q  K  V  Q  M  Y  F  S  S  M  T  K  N  E  G  I  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32717" stop="32469"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNNQDLLPEVLMHDAIFVLVTPFTVVCDSIGLEIKGLCRETSHKSFSFSRWHFVILMMKPNASIQQAKGSDVLFVNDKKRRHS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="42999" PGL_stop="38007"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42999" e_stop="42877"/>
            <exon e_start="42788" e_stop="42651"/>
            <exon e_start="40236" e_stop="39901"/>
            <exon e_start="39783" e_stop="39690"/>
            <exon e_start="39578" e_stop="39567"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.377" e_score="0.989"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42999" e_stop="42877" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42876" i_stop="42789" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42788" e_stop="42651" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.939">
            <gDNA_intron_boundary i_start="42650" i_stop="40237" i_length="2414"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40236" e_stop="39901" e_length="336"/>
          </exon>
          <intron i_serial="3" don_prob="0.891" acc_prob="0.984">
            <gDNA_intron_boundary i_start="39900" i_stop="39784" i_length="117"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="39783" e_stop="39690" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.377">
            <gDNA_intron_boundary i_start="39689" i_stop="39579" i_length="111"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39578" e_stop="39567" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42999" stop="42877"/>
              <exon start="42788" stop="42651"/>
              <exon start="40236" stop="39901"/>
              <exon start="39783" stop="39690"/>
              <exon start="39578" stop="39567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6573" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAGAAGAAGACTGTGATGACGCGAAAGAAGGTTGAATCTCCGCCGCGTGATCCTAATGGAATGTTTTCCGGTATGGTTGTCTTCTTTGTCGGAACCGGAGTTATGTCCCTCCGGCTACAG : ATATGGAAGAGGAAATTGTTGCAAATGGGGGCTATATTTAACGACCGGTTTACTGGAAATGTAACTCATGTTTTTGCAAAGGATGCAAATTTGCTTCTTGAGAAATTTGATAAAGAACTTCTGATTCGCACCAAAGCT : AAATTTCTCTCGTATCAGTGGCTAGAGGACAGCTTAATACAAGGAGAAAAAGCATCTGAGGATCTGTATGTCTTATCCCTGCAATCAGGAGGAGGAAAGTCCCTTAGTCCTAAAGCTGATAATGACGGTCATTCTGATAATGACGGTCATTCTAGAGTTGCACTAAAGAAAAGTCGAATATCTGCTGAAGATGCCAAGAATTCATGCCCAAGACACGTTAATGACAATAAAGACCGTGTTGATCCACGAGATACTAAAAGTGCCTCTTTACTTGCATCACACTCTTCAAGCCCAGAAGTGACAAGTCCAGAGGCCATTCATTCTCTTAATAAGCCT : GTTGGAACATCAGACTCATCTTCACTTTATAAGCCTCCGGATTTAAACCGAAATATCACTCAGATATTCGGGAAGCTTCTCAACATATATAGAG : CACTGGGTGATG</gDNA_template>
            <first_frame> F  E  K  K  T  V  M  T  R  K  K  V  E  S  P  P  R  D  P  N  G  M  F  S  G  M  V  V  F  F  V  G  T  G  V  M  S  L  R  L  Q  :  I  W  K  R  K  L  L  Q  M  G  A  I  F  N  D  R  F  T  G  N  V  T  H  V  F  A  K  D  A  N  L  L  L  E  K  F  D  K  E  L  L  I  R  T  K  A  :  K  F  L  S  Y  Q  W  L  E  D  S  L  I  Q  G  E  K  A  S  E  D  L  Y  V  L  S  L  Q  S  G  G  G  K  S  L  S  P  K  A  D  N  D  G  H  S  D  N  D  G  H  S  R  V  A  L  K  K  S  R  I  S  A  E  D  A  K  N  S  C  P  R  H  V  N  D  N  K  D  R  V  D  P  R  D  T  K  S  A  S  L  L  A  S  H  S  S  S  P  E  V  T  S  P  E  A  I  H  S  L  N  K  P  :  V  G  T  S  D  S  S  S  L  Y  K  P  P  D  L  N  R  N  I  T  Q  I  F  G  K  L  L  N  I  Y  R   : A  L  G  D  </first_frame>
            <second_frame>  L  R  R  R  L  *  *  R  E  R  R  L  N  L  R  R  V  I  L  M  E  C  F  P  V  W  L  S  S  L  S  E  P  E  L  C  P  S  G  Y  R :   Y  G  R  G  N  C  C  K  W  G  L  Y  L  T  T  G  L  L  E  M  *  L  M  F  L  Q  R  M  Q  I  C  F  L  R  N  L  I  K  N  F  *  F  A  P  K  L :   N  F  S  R  I  S  G  *  R  T  A  *  Y  K  E  K  K  H  L  R  I  C  M  S  Y  P  C  N  Q  E  E  E  S  P  L  V  L  K  L  I  M  T  V  I  L  I  M  T  V  I  L  E  L  H  *  R  K  V  E  Y  L  L  K  M  P  R  I  H  A  Q  D  T  L  M  T  I  K  T  V  L  I  H  E  I  L  K  V  P  L  Y  L  H  H  T  L  Q  A  Q  K  *  Q  V  Q  R  P  F  I  L  L  I  S  L :   L  E  H  Q  T  H  L  H  F  I  S  L  R  I  *  T  E  I  S  L  R  Y  S  G  S  F  S  T  Y  I  E  :  H  W  V  M </second_frame>
            <third_frame>   *  E  E  D  C  D  D  A  K  E  G  *  I  S  A  A  *  S  *  W  N  V  F  R  Y  G  C  L  L  C  R  N  R  S  Y  V  P  P  A  T   : D  M  E  E  E  I  V  A  N  G  G  Y  I  *  R  P  V  Y  W  K  C  N  S  C  F  C  K  G  C  K  F  A  S  *  E  I  *  *  R  T  S  D  S  H  Q  S   : *  I  S  L  V  S  V  A  R  G  Q  L  N  T  R  R  K  S  I  *  G  S  V  C  L  I  P  A  I  R  R  R  K  V  P  *  S  *  S  *  *  *  R  S  F  *  *  *  R  S  F  *  S  C  T  K  E  K  S  N  I  C  *  R  C  Q  E  F  M  P  K  T  R  *  *  Q  *  R  P  C  *  S  T  R  Y  *  K  C  L  F  T  C  I  T  L  F  K  P  R  S  D  K  S  R  G  H  S  F  S  *  *  A   : C  W  N  I  R  L  I  F  T  L  *  A  S  G  F  K  P  K  Y  H  S  D  I  R  E  A  S  Q  H  I  *  S :   T  G  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42999" stop="42877"/>
                    <exon start="42788" stop="42651"/>
                    <exon start="40236" stop="39901"/>
                    <exon start="39783" stop="39690"/>
                    <exon start="39578" stop="39568"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEKKTVMTRKKVESPPRDPNGMFSGMVVFFVGTGVMSLRLQIWKRKLLQMGAIFNDRFTGNVTHVFAKDANLLLEKFDKELLIRTKAKFLSYQWLEDSLIQGEKASEDLYVLSLQSGGGKSLSPKADNDGHSDNDGHSRVALKKSRISAEDAKNSCPRHVNDNKDRVDPRDTKSASLLASHSSSPEVTSPEAIHSLNKPVGTSDSSSLYKPPDLNRNITQIFGKLLNIYRALGD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39918" e_stop="39901"/>
            <exon e_start="39783" e_stop="39448"/>
            <exon e_start="39180" e_stop="39102"/>
            <exon e_start="38542" e_stop="38363"/>
            <exon e_start="38276" e_stop="38223"/>
            <exon e_start="38085" e_stop="38007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.891" acc_prob="0.984" e_score="0.889"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.955"/>
          <exon-intron don_prob="0.691" acc_prob="0.990" e_score="0.975"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="0.944"/>
          <exon-intron don_prob="0.931" acc_prob="0.980" e_score="0.926"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.889">
            <gDNA_exon_boundary e_start="39918" e_stop="39901" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.891" acc_prob="0.984">
            <gDNA_intron_boundary i_start="39900" i_stop="39784" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="0.955">
            <gDNA_exon_boundary e_start="39783" e_stop="39448" e_length="336"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39447" i_stop="39181" i_length="267"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="39180" e_stop="39102" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.691" acc_prob="0.990">
            <gDNA_intron_boundary i_start="39101" i_stop="38543" i_length="559"/>
          </intron>
          <exon e_serial="4" e_score="0.944">
            <gDNA_exon_boundary e_start="38542" e_stop="38363" e_length="180"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="38362" i_stop="38277" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="0.926">
            <gDNA_exon_boundary e_start="38276" e_stop="38223" e_length="54"/>
          </exon>
          <intron i_serial="5" don_prob="0.931" acc_prob="0.980">
            <gDNA_intron_boundary i_start="38222" i_stop="38086" i_length="137"/>
          </intron>
          <exon e_serial="6" e_score="0.911">
            <gDNA_exon_boundary e_start="38085" e_stop="38007" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39918" stop="39901"/>
              <exon start="39783" stop="39448"/>
              <exon start="39180" stop="39102"/>
              <exon start="38542" stop="38363"/>
              <exon start="38276" stop="38223"/>
              <exon start="38085" stop="38007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6573-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTCTCTTAATAAGCCT : GTTGGAACATCAGACTCATCTTCACTTTATAAGCCTCCGGATTTAAACCGAAATATCACTCAGATATTCGGGAAGCTTCTCAACATATATAGAGGTAAAATATCTTTTCATACATGTTATTTTTGTAGCTTTTCTCTCACAGATGCCTTTGAGTTAAAAGCTTAAACTTTCAAAGTATGATACAATGGCTGATAGTTTATTATAGCACTGGGTGATGACCGGAGATCATTCAGCTATTATAAAGCTATACCAGTTATTGAGAAACTGCCATTCAAAATTGAGAGTGTGGACCAGGTTAAGCACCTACCTTCTATTGGAAAGTCAATGCAAGATCAT : TGTTCTTTTACTGCAGATTCAGGAGATAGTGACCACAGGAAAGCTGTCCAAATTGGAACACTTTGAGAAGGATGAAAAG : GTAAAAACAATCAGCTTATTTGGAGAGGTTTGGGGTGTTGGTCCATCTACTGCCCTAAAACTTTATGAGAAAGGACACCGAACTCTTGATGACCTTAGAAATGAGGAGTCACTGACTCGTTCTCAAAGGATAGGGTTGAAATATTTTGATGACATCCAGACCAGGATTCAACGGCATGAG : GTCAAAGAGATGGAACGTTTGCTACAGAAAGTTGGAGAAGAAATTTTGCCTGGT : GTGATTGTTGTGTGTGGAGGATCATATAGACGTGGAAAGGCTTCTTGCGGTGATATGGATATTGTTATTACTCATCCTG</gDNA_template>
            <first_frame> H  S  L  N  K  P  :  V  G  T  S  D  S  S  S  L  Y  K  P  P  D  L  N  R  N  I  T  Q  I  F  G  K  L  L  N  I  Y  R  G  K  I  S  F  H  T  C  Y  F  C  S  F  S  L  T  D  A  F  E  L  K  A  *  T  F  K  V  *  Y  N  G  *  *  F  I  I  A  L  G  D  D  R  R  S  F  S  Y  Y  K  A  I  P  V  I  E  K  L  P  F  K  I  E  S  V  D  Q  V  K  H  L  P  S  I  G  K  S  M  Q  D  H  :  C  S  F  T  A  D  S  G  D  S  D  H  R  K  A  V  Q  I  G  T  L  *  E  G  *  K   : G  K  N  N  Q  L  I  W  R  G  L  G  C  W  S  I  Y  C  P  K  T  L  *  E  R  T  P  N  S  *  *  P  *  K  *  G  V  T  D  S  F  S  K  D  R  V  E  I  F  *  *  H  P  D  Q  D  S  T  A  *   : G  Q  R  D  G  T  F  A  T  E  S  W  R  R  N  F  A  W   : C  D  C  C  V  W  R  I  I  *  T  W  K  G  F  L  R  *  Y  G  Y  C  Y  Y  S  S   </first_frame>
            <second_frame>  I  L  L  I  S  L :   L  E  H  Q  T  H  L  H  F  I  S  L  R  I  *  T  E  I  S  L  R  Y  S  G  S  F  S  T  Y  I  E  V  K  Y  L  F  I  H  V  I  F  V  A  F  L  S  Q  M  P  L  S  *  K  L  K  L  S  K  Y  D  T  M  A  D  S  L  L  *  H  W  V  M  T  G  D  H  S  A  I  I  K  L  Y  Q  L  L  R  N  C  H  S  K  L  R  V  W  T  R  L  S  T  Y  L  L  L  E  S  Q  C  K  I  I :   V  L  L  L  Q  I  Q  E  I  V  T  T  G  K  L  S  K  L  E  H  F  E  K  D  E  K  :  V  K  T  I  S  L  F  G  E  V  W  G  V  G  P  S  T  A  L  K  L  Y  E  K  G  H  R  T  L  D  D  L  R  N  E  E  S  L  T  R  S  Q  R  I  G  L  K  Y  F  D  D  I  Q  T  R  I  Q  R  H  E  :  V  K  E  M  E  R  L  L  Q  K  V  G  E  E  I  L  P  G  :  V  I  V  V  C  G  G  S  Y  R  R  G  K  A  S  C  G  D  M  D  I  V  I  T  H  P  </second_frame>
            <third_frame>   F  S  *  *  A   : C  W  N  I  R  L  I  F  T  L  *  A  S  G  F  K  P  K  Y  H  S  D  I  R  E  A  S  Q  H  I  *  R  *  N  I  F  S  Y  M  L  F  L  *  L  F  S  H  R  C  L  *  V  K  S  L  N  F  Q  S  M  I  Q  W  L  I  V  Y  Y  S  T  G  *  *  P  E  I  I  Q  L  L  *  S  Y  T  S  Y  *  E  T  A  I  Q  N  *  E  C  G  P  G  *  A  P  T  F  Y  W  K  V  N  A  R  S   : L  F  F  Y  C  R  F  R  R  *  *  P  Q  E  S  C  P  N  W  N  T  L  R  R  M  K  R :   *  K  Q  S  A  Y  L  E  R  F  G  V  L  V  H  L  L  P  *  N  F  M  R  K  D  T  E  L  L  M  T  L  E  M  R  S  H  *  L  V  L  K  G  *  G  *  N  I  L  M  T  S  R  P  G  F  N  G  M  R :   S  K  R  W  N  V  C  Y  R  K  L  E  K  K  F  C  L  V :   *  L  L  C  V  E  D  H  I  D  V  E  R  L  L  A  V  I  W  I  L  L  L  L  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39578" stop="39448"/>
                    <exon start="39180" stop="39102"/>
                    <exon start="38542" stop="38363"/>
                    <exon start="38276" stop="38223"/>
                    <exon start="38085" stop="38008"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HWVMTGDHSAIIKLYQLLRNCHSKLRVWTRLSTYLLLESQCKIIVLLLQIQEIVTTGKLSKLEHFEKDEKVKTISLFGEVWGVGPSTALKLYEKGHRTLDDLRNEESLTRSQRIGLKYFDDIQTRIQRHEVKEMERLLQKVGEEILPGVIVVCGGSYRRGKASCGDMDIVITHP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="47040" PGL_stop="49362"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47040" e_stop="47050"/>
            <exon e_start="47134" e_stop="47579"/>
            <exon e_start="47939" e_stop="48260"/>
            <exon e_start="48582" e_stop="48734"/>
            <exon e_start="49092" e_stop="49362"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.335" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.932" e_score="0.962"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.969"/>
          <exon-intron don_prob="0.995" acc_prob="0.954" e_score="0.974"/>
          <exon-only e_score="0.841"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47040" e_stop="47050" e_length="11"/>
          </exon>
          <intron i_serial="1" don_prob="0.335" acc_prob="0.996">
            <gDNA_intron_boundary i_start="47051" i_stop="47133" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="47134" e_stop="47579" e_length="446"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.932">
            <gDNA_intron_boundary i_start="47580" i_stop="47938" i_length="359"/>
          </intron>
          <exon e_serial="3" e_score="0.969">
            <gDNA_exon_boundary e_start="47939" e_stop="48260" e_length="322"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48261" i_stop="48581" i_length="321"/>
          </intron>
          <exon e_serial="4" e_score="0.974">
            <gDNA_exon_boundary e_start="48582" e_stop="48734" e_length="153"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.954">
            <gDNA_intron_boundary i_start="48735" i_stop="49091" i_length="357"/>
          </intron>
          <exon e_serial="5" e_score="0.841">
            <gDNA_exon_boundary e_start="49092" e_stop="49362" e_length="271"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47040" stop="47050"/>
              <exon start="47134" stop="47579"/>
              <exon start="47939" stop="48260"/>
              <exon start="48582" stop="48734"/>
              <exon start="49092" stop="49362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6905" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAATATGTG : GTTTTTGATGAGGCAGATATGCTGCTTTGTGGAAGTTTCCAGAACCAAGTGGTCCGACTTATAAATATGCTTCGTTTTGATGAGAAGCAGTTATCTCGTTCTAAAAATTCTGGAGCTGAGATGTCATCTACTTCAGACTTGGAAGAGTTTAGGGACCTAAAAGCAGATTATGGTGAAGATGCAGATGAAGTTGAAGATGAAGATGAAGATGAGGATGAAGATACTGAAGTTGGCAAAGATAGAGCAAATCTAGAAACAGATACCAAGGGGCTAAAGAGAAGAGATTGGCGAAGAGTGAGAAAGATATATGAGCGGAGCAAGCAGTACATTTTTGTTGCAGCGACCCTTCCTGAAAATGGGAAGAGAACTGCTGGAGGAGTGTTGAAGCGGATGTTTCCTGAAGCTACCTGGGTTAGTGGAAATTATCTTCATCAGCACAGCCCGAG : GTTGGAGCAAAGGTGGATTGAAGTTTCAGTTGACACCCAAGTGGACATTCTCATAAATGCTGTGGAAAATGGGAATTCTATGGCAGATAGTAGTCCTGGAGTGCTCCGAACCATGGTCTTTGCAAATACTGTTGACGCTGTGGAAGCTGTTGCTAATATCTTGACAAGAGTTGGACTTGAATGTTTCCGTTACCATAGTGATAGCTCTTTGGAGGAGCGCACAAAGAATTTACTTGATTTCCAACAGAAAGGTGGTGTTTTTGTGTGCACGGATGCTGCAGCACGTGGTATTGACATTCCAAATGTTTCACATGTTATTCAG : GCAGAGTTTGCCACATCTGCTGTAGATTTCTTGCACAGGGTTGGACGTACAGCTAGAGCAGGCCAACCTGGCCTTGTTACGAGTCTATATTCAGAATCAAACCGTGATCTAGTTGCTGCCATTCGTCATGCAGAAAAAATTGAAGAGCCAGTG : GAGAAAGCATTTAGCAGAAAAAGGAGTTTTCGCAATAAAATCAAGAAAAGAGGCAGAGAAGCTTCACACATGAGGTGAAAAATGTGAATTTTGACTTGGGACTTGGGAGTGAGTTTCTATTTGCATTTGTTTTCTCCACACTGTTTGTATTTTATAGTGTTATTGTAATATACTGTAAAAGAAATTAATTAGTTCAGAGTATTTAATATGAAAGTTCACACATTTTCCCAGTCTCTTAATCATGAAGTGAAGTTGAATATAAAGATCACAC</gDNA_template>
            <first_frame> L  N  M  W :   F  L  M  R  Q  I  C  C  F  V  E  V  S  R  T  K  W  S  D  L  *  I  C  F  V  L  M  R  S  S  Y  L  V  L  K  I  L  E  L  R  C  H  L  L  Q  T  W  K  S  L  G  T  *  K  Q  I  M  V  K  M  Q  M  K  L  K  M  K  M  K  M  R  M  K  I  L  K  L  A  K  I  E  Q  I  *  K  Q  I  P  R  G  *  R  E  E  I  G  E  E  *  E  R  Y  M  S  G  A  S  S  T  F  L  L  Q  R  P  F  L  K  M  G  R  E  L  L  E  E  C  *  S  G  C  F  L  K  L  P  G  L  V  E  I  I  F  I  S  T  A  R   : G  W  S  K  G  G  L  K  F  Q  L  T  P  K  W  T  F  S  *  M  L  W  K  M  G  I  L  W  Q  I  V  V  L  E  C  S  E  P  W  S  L  Q  I  L  L  T  L  W  K  L  L  L  I  S  *  Q  E  L  D  L  N  V  S  V  T  I  V  I  A  L  W  R  S  A  Q  R  I  Y  L  I  S  N  R  K  V  V  F  L  C  A  R  M  L  Q  H  V  V  L  T  F  Q  M  F  H  M  L  F  R :   Q  S  L  P  H  L  L  *  I  S  C  T  G  L  D  V  Q  L  E  Q  A  N  L  A  L  L  R  V  Y  I  Q  N  Q  T  V  I  *  L  L  P  F  V  M  Q  K  K  L  K  S  Q  W :   R  K  H  L  A  E  K  G  V  F  A  I  K  S  R  K  E  A  E  K  L  H  T  *  G  E  K  C  E  F  *  L  G  T  W  E  *  V  S  I  C  I  C  F  L  H  T  V  C  I  L  *  C  Y  C  N  I  L  *  K  K  L  I  S  S  E  Y  L  I  *  K  F  T  H  F  P  S  L  L  I  M  K  *  S  *  I  *  R  S  H </first_frame>
            <second_frame>  *  I  C   : G  F  *  *  G  R  Y  A  A  L  W  K  F  P  E  P  S  G  P  T  Y  K  Y  A  S  F  *  *  E  A  V  I  S  F  *  K  F  W  S  *  D  V  I  Y  F  R  L  G  R  V  *  G  P  K  S  R  L  W  *  R  C  R  *  S  *  R  *  R  *  R  *  G  *  R  Y  *  S  W  Q  R  *  S  K  S  R  N  R  Y  Q  G  A  K  E  K  R  L  A  K  S  E  K  D  I  *  A  E  Q  A  V  H  F  C  C  S  D  P  S  *  K  W  E  E  N  C  W  R  S  V  E  A  D  V  S  *  S  Y  L  G  *  W  K  L  S  S  S  A  Q  P  E  :  V  G  A  K  V  D  *  S  F  S  *  H  P  S  G  H  S  H  K  C  C  G  K  W  E  F  Y  G  R  *  *  S  W  S  A  P  N  H  G  L  C  K  Y  C  *  R  C  G  S  C  C  *  Y  L  D  K  S  W  T  *  M  F  P  L  P  *  *  *  L  F  G  G  A  H  K  E  F  T  *  F  P  T  E  R  W  C  F  C  V  H  G  C  C  S  T  W  Y  *  H  S  K  C  F  T  C  Y  S   : G  R  V  C  H  I  C  C  R  F  L  A  Q  G  W  T  Y  S  *  S  R  P  T  W  P  C  Y  E  S  I  F  R  I  K  P  *  S  S  C  C  H  S  S  C  R  K  N  *  R  A  S   : G  E  S  I  *  Q  K  K  E  F  S  Q  *  N  Q  E  K  R  Q  R  S  F  T  H  E  V  K  N  V  N  F  D  L  G  L  G  S  E  F  L  F  A  F  V  F  S  T  L  F  V  F  Y  S  V  I  V  I  Y  C  K  R  N  *  L  V  Q  S  I  *  Y  E  S  S  H  I  F  P  V  S  *  S  *  S  E  V  E  Y  K  D  H   </second_frame>
            <third_frame>   K  Y  V  :  V  F  D  E  A  D  M  L  L  C  G  S  F  Q  N  Q  V  V  R  L  I  N  M  L  R  F  D  E  K  Q  L  S  R  S  K  N  S  G  A  E  M  S  S  T  S  D  L  E  E  F  R  D  L  K  A  D  Y  G  E  D  A  D  E  V  E  D  E  D  E  D  E  D  E  D  T  E  V  G  K  D  R  A  N  L  E  T  D  T  K  G  L  K  R  R  D  W  R  R  V  R  K  I  Y  E  R  S  K  Q  Y  I  F  V  A  A  T  L  P  E  N  G  K  R  T  A  G  G  V  L  K  R  M  F  P  E  A  T  W  V  S  G  N  Y  L  H  Q  H  S  P  R :   L  E  Q  R  W  I  E  V  S  V  D  T  Q  V  D  I  L  I  N  A  V  E  N  G  N  S  M  A  D  S  S  P  G  V  L  R  T  M  V  F  A  N  T  V  D  A  V  E  A  V  A  N  I  L  T  R  V  G  L  E  C  F  R  Y  H  S  D  S  S  L  E  E  R  T  K  N  L  L  D  F  Q  Q  K  G  G  V  F  V  C  T  D  A  A  A  R  G  I  D  I  P  N  V  S  H  V  I  Q  :  A  E  F  A  T  S  A  V  D  F  L  H  R  V  G  R  T  A  R  A  G  Q  P  G  L  V  T  S  L  Y  S  E  S  N  R  D  L  V  A  A  I  R  H  A  E  K  I  E  E  P  V  :  E  K  A  F  S  R  K  R  S  F  R  N  K  I  K  K  R  G  R  E  A  S  H  M  R  *  K  M  *  I  L  T  W  D  L  G  V  S  F  Y  L  H  L  F  S  P  H  C  L  Y  F  I  V  L  L  *  Y  T  V  K  E  I  N  *  F  R  V  F  N  M  K  V  H  T  F  S  Q  S  L  N  H  E  V  K  L  N  I  K  I  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47042" stop="47050"/>
                    <exon start="47134" stop="47579"/>
                    <exon start="47939" stop="48260"/>
                    <exon start="48582" stop="48734"/>
                    <exon start="49092" stop="49169"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1005</number_coding_nucleotides>
                  <number_encoded_amino_acids>335</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYVVFDEADMLLCGSFQNQVVRLINMLRFDEKQLSRSKNSGAEMSSTSDLEEFRDLKADYGEDADEVEDEDEDEDEDTEVGKDRANLETDTKGLKRRDWRRVRKIYERSKQYIFVAATLPENGKRTAGGVLKRMFPEATWVSGNYLHQHSPRLEQRWIEVSVDTQVDILINAVENGNSMADSSPGVLRTMVFANTVDAVEAVANILTRVGLECFRYHSDSSLEERTKNLLDFQQKGGVFVCTDAAARGIDIPNVSHVIQAEFATSAVDFLHRVGRTARAGQPGLVTSLYSESNRDLVAAIRHAEKIEEPVEKAFSRKRSFRNKIKKRGREASHMR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="56878" PGL_stop="55983"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56878" e_stop="56826"/>
            <exon e_start="56739" e_stop="56638"/>
            <exon e_start="56543" e_stop="56226"/>
            <exon e_start="55996" e_stop="55983"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.680" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.563" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56878" e_stop="56826" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.680" acc_prob="0.994">
            <gDNA_intron_boundary i_start="56825" i_stop="56740" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56739" e_stop="56638" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.563">
            <gDNA_intron_boundary i_start="56637" i_stop="56544" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="56543" e_stop="56226" e_length="318"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="56225" i_stop="55997" i_length="229"/>
          </intron>
          <exon e_serial="4" e_score="0.929">
            <gDNA_exon_boundary e_start="55996" e_stop="55983" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56878" stop="56826"/>
              <exon start="56739" stop="56638"/>
              <exon start="56543" stop="56226"/>
              <exon start="55996" stop="55983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M384-R" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTAGTCAATGAATCTTTGATGACACTCAATTTAGGGTTCAATGAAATTAGA : GATGAAGGAGCTTTTTCTATCGCTCAAGCACTTAAAGCAAATGAAGATGTTAGACTCACATCTTTAAATCTTGCCAGTAACTTCCTCACCAAATTAGGACAG : ACAGCTCTCACAGATGCAAGAGACCATGTATTTGAGATGACTGAGAAGGAGCTTGCTGTTATGTTCTAAAATACCACATTCCTTAGATCAGATTTATTTTTCTCCCTGCTTTCATTCTTGAGGTTGGGGCAGGGCTGCATAGGTGAGTATTTTTTTTTCTTTTACCAATGATATTCCTAAGAGTCCGACCTCAGCTCCCCTTTGTGACTGAATCATTTTGAGCGGGGGGACGGTGGAAATTTTGATAAATAACATTCCGTTTCTGAAACATTAGTGGCAAGTATATAGAGATTACTTCTATTCACCATTTCATATTCA : AAAAAACAAAAAAA</gDNA_template>
            <first_frame> K  *  S  M  N  L  *  *  H  S  I  *  G  S  M  K  L  E :   M  K  E  L  F  L  S  L  K  H  L  K  Q  M  K  M  L  D  S  H  L  *  I  L  P  V  T  S  S  P  N  *  D  R :   Q  L  S  Q  M  Q  E  T  M  Y  L  R  *  L  R  R  S  L  L  L  C  S  K  I  P  H  S  L  D  Q  I  Y  F  S  P  C  F  H  S  *  G  W  G  R  A  A  *  V  S  I  F  F  S  F  T  N  D  I  P  K  S  P  T  S  A  P  L  C  D  *  I  I  L  S  G  G  T  V  E  I  L  I  N  N  I  P  F  L  K  H  *  W  Q  V  Y  R  D  Y  F  Y  S  P  F  H  I  Q :   K  N  K  K  </first_frame>
            <second_frame>  S  S  Q  *  I  F  D  D  T  Q  F  R  V  Q  *  N  *   : R  *  R  S  F  F  Y  R  S  S  T  *  S  K  *  R  C  *  T  H  I  F  K  S  C  Q  *  L  P  H  Q  I  R  T   : D  S  S  H  R  C  K  R  P  C  I  *  D  D  *  E  G  A  C  C  Y  V  L  K  Y  H  I  P  *  I  R  F  I  F  L  P  A  F  I  L  E  V  G  A  G  L  H  R  *  V  F  F  F  L  L  P  M  I  F  L  R  V  R  P  Q  L  P  F  V  T  E  S  F  *  A  G  G  R  W  K  F  *  *  I  T  F  R  F  *  N  I  S  G  K  Y  I  E  I  T  S  I  H  H  F  I  F   : K  K  T  K  K </second_frame>
            <third_frame>   V  V  N  E  S  L  M  T  L  N  L  G  F  N  E  I  R  :  D  E  G  A  F  S  I  A  Q  A  L  K  A  N  E  D  V  R  L  T  S  L  N  L  A  S  N  F  L  T  K  L  G  Q  :  T  A  L  T  D  A  R  D  H  V  F  E  M  T  E  K  E  L  A  V  M  F  *  N  T  T  F  L  R  S  D  L  F  F  S  L  L  S  F  L  R  L  G  Q  G  C  I  G  E  Y  F  F  F  F  Y  Q  *  Y  S  *  E  S  D  L  S  S  P  L  *  L  N  H  F  E  R  G  D  G  G  N  F  D  K  *  H  S  V  S  E  T  L  V  A  S  I  *  R  L  L  L  F  T  I  S  Y  S  :  K  K  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56876" stop="56826"/>
                    <exon start="56739" stop="56638"/>
                    <exon start="56543" stop="56475"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVNESLMTLNLGFNEIRDEGAFSIAQALKANEDVRLTSLNLASNFLTKLGQTALTDARDHVFEMTEKELAVMF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="59198" PGL_stop="57550"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59198" e_stop="59132"/>
            <exon e_start="59038" e_stop="58977"/>
            <exon e_start="58767" e_stop="58698"/>
            <exon e_start="58185" e_stop="58110"/>
            <exon e_start="58012" e_stop="57882"/>
            <exon e_start="57609" e_stop="57550"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.709" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.959" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59198" e_stop="59132" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.709" acc_prob="0.988">
            <gDNA_intron_boundary i_start="59131" i_stop="59039" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59038" e_stop="58977" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58976" i_stop="58768" i_length="209"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58767" e_stop="58698" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58697" i_stop="58186" i_length="512"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58185" e_stop="58110" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.917">
            <gDNA_intron_boundary i_start="58109" i_stop="58013" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58012" e_stop="57882" e_length="131"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.959">
            <gDNA_intron_boundary i_start="57881" i_stop="57610" i_length="272"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="57609" e_stop="57550" e_length="60"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59198" stop="59132"/>
              <exon start="59038" stop="58977"/>
              <exon start="58767" stop="58698"/>
              <exon start="58185" stop="58110"/>
              <exon start="58012" stop="57882"/>
              <exon start="57609" stop="57550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M384-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAATGCTGAAAAAAAATTCAACCTTGCGTGTTCTTGAACTAAACAATAATCTGATTGACTATTCT : GGATTTTCAGGTCTTGCTGGATCACTTCTTGAGAATAAAACTTTACAATCCTTGCATCTCAA : CGGCAATTATGGTGGTGCTTTAGGGGCTGCAGCACTGGCTAAAGGCTTGGAGAGCAATAAGTCCTTGAGG : GAACTTTATTTGCAGGGGAACTCTGTTGGCGATGAAGGAGTACGGGCATTAATCTCTGGCCTGTCTTTGCGTAAAG : GGAAACTTGTCTTACTTGACCTTGCCAACAATTCAATTACTGCAAGAGGAGCATTTCATGTTGCCGAATACGTCAAAAAAAGCAAAAGCTTACTGTGGTTGAATCTCTATATGAATGACATTAAAGATGAG : GGAGCTGAAAAGATTGCAGAAGCTTTGAAGGAGAACCGCTCGATAACTAATGTTGATCTT</gDNA_template>
            <first_frame> *  N  A  E  K  K  F  N  L  A  C  S  *  T  K  Q  *  S  D  *  L  F   : W  I  F  R  S  C  W  I  T  S  *  E  *  N  F  T  I  L  A  S  Q  :  R  Q  L  W  W  C  F  R  G  C  S  T  G  *  R  L  G  E  Q  *  V  L  E   : G  T  L  F  A  G  E  L  C  W  R  *  R  S  T  G  I  N  L  W  P  V  F  A  *  R :   E  T  C  L  T  *  P  C  Q  Q  F  N  Y  C  K  R  S  I  S  C  C  R  I  R  Q  K  K  Q  K  L  T  V  V  E  S  L  Y  E  *  H  *  R  *   : G  S  *  K  D  C  R  S  F  E  G  E  P  L  D  N  *  C  *  S  </first_frame>
            <second_frame>  E  M  L  K  K  N  S  T  L  R  V  L  E  L  N  N  N  L  I  D  Y  S  :  G  F  S  G  L  A  G  S  L  L  E  N  K  T  L  Q  S  L  H  L  N :   G  N  Y  G  G  A  L  G  A  A  A  L  A  K  G  L  E  S  N  K  S  L  R  :  E  L  Y  L  Q  G  N  S  V  G  D  E  G  V  R  A  L  I  S  G  L  S  L  R  K   : G  K  L  V  L  L  D  L  A  N  N  S  I  T  A  R  G  A  F  H  V  A  E  Y  V  K  K  S  K  S  L  L  W  L  N  L  Y  M  N  D  I  K  D  E  :  G  A  E  K  I  A  E  A  L  K  E  N  R  S  I  T  N  V  D  L </second_frame>
            <third_frame>   K  C  *  K  K  I  Q  P  C  V  F  L  N  *  T  I  I  *  L  T  I  L :   D  F  Q  V  L  L  D  H  F  L  R  I  K  L  Y  N  P  C  I  S   : T  A  I  M  V  V  L  *  G  L  Q  H  W  L  K  A  W  R  A  I  S  P  *  G :   N  F  I  C  R  G  T  L  L  A  M  K  E  Y  G  H  *  S  L  A  C  L  C  V  K  :  G  N  L  S  Y  L  T  L  P  T  I  Q  L  L  Q  E  E  H  F  M  L  P  N  T  S  K  K  A  K  A  Y  C  G  *  I  S  I  *  M  T  L  K  M  R :   E  L  K  R  L  Q  K  L  *  R  R  T  A  R  *  L  M  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0191B01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59197" stop="59132"/>
                    <exon start="59038" stop="58977"/>
                    <exon start="58767" stop="58698"/>
                    <exon start="58185" stop="58110"/>
                    <exon start="58012" stop="57882"/>
                    <exon start="57609" stop="57550"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMLKKNSTLRVLELNNNLIDYSGFSGLAGSLLENKTLQSLHLNGNYGGALGAAALAKGLESNKSLRELYLQGNSVGDEGVRALISGLSLRKGKLVLLDLANNSITARGAFHVAEYVKKSKSLLWLNLYMNDIKDEGAEKIAEALKENRSITNVDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 15 chains have been computed
$ 
$ memory statistics:
$ 35920 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 4490 bytes was the average size of a spliced alignment
$ 12352 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2058 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 18 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:27:48
-->
