<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:31:08"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0161A14-QW2M3/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0161A14-QW2M3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161A14-QW2M3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323748" ref_strand="+" ref_description="SGN-U323748        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: AT5G16000.1 | Symbol: None | leucine-rich repeat family protein / protein kinase family protein, contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain | chr5:5224146-5227291 FORWARD | Aliases: F1N13.140, F1N13_140 (evalue: 2e-84, score=309) genbank/nr: leucine-rich(evalue: 1e-89, score=333)">
      <seq>gattatccacagggatgtgaaggcagcaaatatattgctcgacgatgactgtgaggctgtcgtgggagattttggattggcaaagctattggatcatcgcgattcacatgtcacaactgcagttaggggaacagtaggacatatagctcctgagtatctctctacaggacagtcctctgataaaacagatgttttcgggtttggaattctcctgctagagttgatatctggccagagagctcttgaatttggtaaagcagcaaatcagaaaggtgttatgcttgattgggtgaagaagattcacctggagaaaaagcttgatttgctggtgagcaaggacttaaaggacaaatatgatcggatcgagcttgaggaaatggtacaagtagctctaatatgcactcagtatcaccctagtcatagaccaaaaatgtcagaagtggtaagaatgctcgaaggagacggacttgcagagaaatgggaagcttcacaaagagcagaatctacgcgatgcagagccaatgagttctcgtcttcagaaagatattctgatcttactgatgattcttcattgcttgttcaagcaatggaattatcaggaccaaggtgatgtagattataaaagatagataattagatgaaacaaaaaaagggcatctgagatagaatgctcaagtaatattgctgtatgttattgagcttgtttttttgttttcttttattaaccgagaagtcctcgagggtcaatagtgcactgttcataactcagtggatgatagaaccgcccctttactcttctccagttatataccagacgcggtagggttcaattgagcttgtatatatatgattatatggaagctgcataaaggaatgagatatgttctgactgtataggaaaaagactgatgtatgcacaactgacccctcaccccttttttttccctcttcatgttttgagtgataatttttctaggatgtgaaattgtaactttgagcttgtaagaataatattgttgaaattcaatttcagcttataaataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161A14-QW2M3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161A14.1" temp_strand="+" temp_description="C05HBa0161A14.1  AC225118.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0161A14 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="11485" stop="13315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11785" g_stop="12073" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12074" i_stop="12262" i_length="189">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12263" g_stop="13014" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="1042" r_length="753" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13015" i_stop="13117" i_length="103">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13118" g_stop="13133" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1043" r_stop="1058" r_length="16" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161A14.1" gen_strand="+" ref_id="SGN-U323748" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1057</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161A14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11785" e_stop="12073"/>
          <exon e_start="12263" e_stop="13014"/>
          <exon e_start="13118" e_stop="13133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATCCACAGGGATGTGAAGGCAGCAAATATATTGCTCGACGATGACTGTGAGGCTGTCGTGGGAGATTTTGGATTGGCAAAGCTATTGGATCATCGCGATTCACATGTCACAACTGCAGTTAGGGGAACAGTAGGACATATAGCTCCTGAGTATCTCTCTACAGGACAGTCCTCTGATAAAACAGATGTTTTCGGGTTTGGAATTCTCCTGCTAGAGTTGATATCTGGCCAGAGAGCTCTTGAATTTGGTAAAGCAGCAAATCAGAAAGGTGTTATGCTTGATTGGGTAAGTATTACACATTCCAATATGTGACAAAACCCTCCATCTCAATTTGTCTTACTTTTCTTTTTAGTCTGTTTAGACAAAAAAATACCTATGACCATTCTATATCGAGTATGTTGACAAACAAAAAGAAACGGAGACTCTCTCAATTCTTGTTGGGGTTGATAATATCAATGTGCATATCTGTTGCAGGTGAAGAAGATTCACCTGGAGAAAAAGCTTGATTTGCTGGTGAGCAAGGACTTAAAGGACAAATATGATCGGATCGAGCTTGAGGAAATGGTACAAGTAGCTCTAATATGCACTCAGTATCACCCTAGTCATAGACCAAAAATGTCAGAAGTGGTAAGAATGCTCGAAGGAGACGGACTTGCAGAGAAATGGGAAGCTTCACAAAGAGCAGAATCTACGCGATGCAGAGCCAATGAGTTCTCGTCTTCAGAAAGATATTCTGATCTTACTGATGATTCTTCATTGCTTGTTCAAGCAATGGAATTATCAGGACCAAGGTGATGTAGATTATAAAAGATAGATAATTAGATGAAACAAAAAAAGGGCATCTGAGATAGAATGCTCAAGTAATATTGCTGTATGTTATTGAGCTTGTTTTTTTGTTTTCTTTTATTAACCGAGAAGTCCTCGAGGGTCAATAGTGCACTGTTCATAACTCAGTGGATGATAGAACCGCCCCTTTACTCTTCTCCAGTTATATACCAGACGCGGTAGGGTTCAATTGAGCTTGTATATATATGATTATATGGAAGCTGCATAAAGGAATGAGATATGTTCTGACTGTATAGGAAAAAGACTGATGTATGCACAACTGACCCCTCACCCC-TTTTTTTCCCTCTTCATGTTTTGAGTGATAATTTTTCTAGGATGTGAAATTGTAACTTTGAGCTTGTAAGAATAATATTGTTGAAATTCAATTTCAGCTTATAAATATGTATATTGTATCATAATTCTCATCGAAAAATGTTGTTCAAAAGGATCATCTTTTCCATTCAAAAGGGATTTGATCGAATTTCATTCTTTCTCACTATTCAGAACAAGAAACATAAAA</genome_strand>
        <mrna_strand>GATTATCCACAGGGATGTGAAGGCAGCAAATATATTGCTCGACGATGACTGTGAGGCTGTCGTGGGAGATTTTGGATTGGCAAAGCTATTGGATCATCGCGATTCACATGTCACAACTGCAGTTAGGGGAACAGTAGGACATATAGCTCCTGAGTATCTCTCTACAGGACAGTCCTCTGATAAAACAGATGTTTTCGGGTTTGGAATTCTCCTGCTAGAGTTGATATCTGGCCAGAGAGCTCTTGAATTTGGTAAAGCAGCAAATCAGAAAGGTGTTATGCTTGATTGG.............................................................................................................................................................................................GTGAAGAAGATTCACCTGGAGAAAAAGCTTGATTTGCTGGTGAGCAAGGACTTAAAGGACAAATATGATCGGATCGAGCTTGAGGAAATGGTACAAGTAGCTCTAATATGCACTCAGTATCACCCTAGTCATAGACCAAAAATGTCAGAAGTGGTAAGAATGCTCGAAGGAGACGGACTTGCAGAGAAATGGGAAGCTTCACAAAGAGCAGAATCTACGCGATGCAGAGCCAATGAGTTCTCGTCTTCAGAAAGATATTCTGATCTTACTGATGATTCTTCATTGCTTGTTCAAGCAATGGAATTATCAGGACCAAGGTGATGTAGATTATAAAAGATAGATAATTAGATGAAACAAAAAAAGGGCATCTGAGATAGAATGCTCAAGTAATATTGCTGTATGTTATTGAGCTTGTTTTTTTGTTTTCTTTTATTAACCGAGAAGTCCTCGAGGGTCAATAGTGCACTGTTCATAACTCAGTGGATGATAGAACCGCCCCTTTACTCTTCTCCAGTTATATACCAGACGCGGTAGGGTTCAATTGAGCTTGTATATATATGATTATATGGAAGCTGCATAAAGGAATGAGATATGTTCTGACTGTATAGGAAAAAGACTGATGTATGCACAACTGACCCCTCACCCCTTTTTTTTCCCTCTTCATGTTTTGAGTGATAATTTTTCTAGGATGTGAAATTGTAACTTTGAGCTTGTAAGAATAATATTGTTGAAATTCAATTTCAGCTTATAAAT.......................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161A14-QW2M3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326365" ref_strand="+" ref_description="SGN-U326365        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | F-box family protein, contains F-box domain Pfam:PF00646 ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 | chr1:4642343-4644419 REVERSE | Aliases: F13B4.6, F13B4_6(evalue: 7e-15, score=79) genbank/nr: Cyclin-like(evalue: 2e-19, score=100)">
      <seq>tcgagatgttgtaagagttagtacactttcaaaggactggcaatataatttctagagaattccacatgtgaaattttatcaaacagtgtggaaaacacccgaggacttgacatcccctgccattggatttattccgattcttgatagtttgctcaggtttcatagaggaataatattgaaggtcaccctcaatattattagtctaataatgtgtcctaatgttgatcgtctaattttttccctcgacattgatcacattcaacattttgtccttgaaattccatttacttatcctccatttaggttgcccaacttcttttttattgttcagcattgaggcatttctatctcatgggatgtgaaatacaactttcatgtttctttaagggatttaataagttgattaggctaatattgaaatctgtatcgttatcttctgatacgtttgaaaatttgatctctaattgcccgttgcttgaggatttggtgctaaaagacacagacaattcgtacctcattattagtaattctcttaagctaaggtcatttgtctttcgtggcgatatacaattgatacatcttgaaaatgtccctgttctttccaatgttctgtatgcgcctagagaattagttctagaggacgaagatgattttgtcaatattttttcgtctattgttgctctccagtgtttcagcatggatctttttgagttcgataatggaacaactaaagttataccaacaaggcttccatcagttcttaactgtctgaaatgcctattcatgtcttggattactcttggagagttttttaagctttcgtttgctctttgcattataaagagctctccaaatttggaagaaattgaaattaaggaatttttctttagtgatggagattatttcgaatctgtgtcccaggaggttgttgatgagattcttccaagcttttcggatatcacatttaatcatctaaggacagttaagttttatgatataccattagaagaggttgaaatacagcttatcaaggttttattggcaaagcctccaacattggtgaaaatggtaatcaagcctcgtcaaatggaaactatcaaatctctcaacttactcgcggagataacaaagttttaacaggcaccatctaaagcagaagttgtgtatcttttttattagtatcgttatcacaatccttcctaatctttggttaaaatatttttgaagtacaaacagaaacgagacatttggttgatggagtaacaagactgtgttttgccttcgctttaaggtactataaagattttatctgcttggaagcatagaattgtatatgttttgtatactctgtttgggaacagagatggtttttacatttcatggatgctcttaaatgatatatgatttgagtctttggttgtttattgcaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161A14-QW2M3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161A14.1" temp_strand="-" temp_description="C05HBa0161A14.1  AC225118.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0161A14 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="69126" stop="42395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68826" g_stop="68115" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68114" i_stop="68021" i_length="94">
            <donor d_prob="0.997" d_score="0.86"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68020" g_stop="67856" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="876" r_length="165" r_score="0.921"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67855" i_stop="67763" i_length="93">
            <donor d_prob="0.967" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67762" g_stop="67318" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="877" r_stop="1321" r_length="445" r_score="0.910"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67317" i_stop="63480" i_length="3838">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63479" g_stop="63370" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1322" r_stop="1431" r_length="110" r_score="0.891"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63369" i_stop="62880" i_length="490">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62879" g_stop="62864" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1432" r_stop="1447" r_length="16" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161A14.1" gen_strand="-" ref_id="SGN-U326365" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>1448</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161A14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68826" e_stop="68115"/>
          <exon e_start="68020" e_stop="67856"/>
          <exon e_start="67762" e_stop="67318"/>
          <exon e_start="63479" e_stop="63370"/>
          <exon e_start="62879" e_stop="62864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGATGTTGTTAGAGTTAGTACACTTTCGAAGGACTGGCAATATATTTGCTGGAGAATTCCAAATGTGAAGTTTGATCAAACAGTGTGGAAAACACCAGAGGACTTGACGTCCCCTACCATTGGATTTATTCCAATTCTTGAGAGTTTCCTCAGGTTTCATAGAGGAATAATATTGAAGGTCACCCTCAATATTACTAGTCTAATAGTGTGTCCTGATGTTGATCGTTTGATTTTTTCCCTCGACACTGATCATCTTCAATATTTTGTCCTTAAACTTCCATTTACTTATCCTCCATACAGGTTGCCCAACTTCTTTTTTAATTGTTCAGCATTGAGGCATTTGTATCTCAAGGAATGTGAAATACAGCTTCCATGTTTCTTTAAGGGATTTAGTCAGTTGATTAGGCTAATATTGAAATCTGTCACGTTATCTTCTGATACGTTTGAAAGTTTGATCTCTAATTGCCCGTTGCTTGGGGATTTGGTGCTAAAAGACATAGACAATCTGTACCCCATGAGTATTAATGCTCCGAAGCTAAGGTCATTTGTCTTTCATGGCGATATACAATTGATACATCTTGAAAATGTCCCTGTTCTTTCCAATGTTCTGTATGTGCCTAGAGAATTAGTTCTACAGGGCGAAGATGATTTTGTCAATATTTTTTCGTCTATCCCTGCTCTCGAGTGTTTCAGCTGGGATTTTTTTGAGGTATGTTACTTCATTTTACTTAATGGTAATGCAATTTCATGTGTACTTTTTATTAGACTTTGATTCATCCTGATTTTTGTCATTTTATTCATAGGTCGATAAAGGATCAACTAAAGTTATACCAACAAGGCTTCCATCAGCCCTTAACTGTCTGAAACGCCTATTCATGTCTTGGATTACTCTTGGAGAGTTTTTTGAGCTTTCGTTTGCTCTTTGCATAATACGAAGCTCTCCAAATTTGGAAGAAATTGAAAGCAAGGTTGTCACTAATGTTTATTTTTCTCTCTATATCTTCCATGTTTTTATATTCGTATGTAATGACTTGATGGTTTTTTTTCTTGATTTTTCTTAGGAATGTATCCTTAGTGATGGAGATTATTTCGAATCTGTGCCCCAGGAGGTTGTCGATGAGATTCCTGCAAGCTTTTCGGATATCACATTTCATCATCTGAGGACAGTTATGTTTTATGATATACAATTAGAAGAGGTTGAAATGCAGCTTATCAAGGTTTTATTGGCAAAGTCTCCAGCACTGGTGAAAATGGTAATCAAGCCTCGTCAAATGGAAACTAACAAATCTCTCAACGTACTCGCGGAGATAACAAAGTTTCAACAGGCATCATCTAAAGTAGAAATTGTTTATCTTGCTGATTAGTATCGTTATCACAATCTTTCTTAATCTTTGGCATAAATATTTTGGAAGTACAAACTGAAACGAGACGTTTGGTTGATGGAGTAGCGTGGCTGTGTTTTGCGTTTGCTTTAAGGTACTATAAAGATTTTATCTGCTTGGAAACATAGAATTGTGAACTTGGATGAATGTTTTGAATACTCTGTTTGGGAACAGAGATGGTTTTTCATTTCATTTTTGTTATTATTTAAGACTTTGGTTGTTTATTTTGAAGTTATGCTGTGTGTTAGCAGAACTAACAAAGATTTTGCATGACAATCTTGTTATTGATCCATCTATGAAATAAGACATGGCTTTGGAAGTTGGAACTGTCAGGAAATAATTCAGATAGAACATGAAAAACACATGATGATTGACATATAAAACTCGGAAAAGGAAAAAAAATAAAACTTTAAATGTGTCTTGATTATCTTTTCCTTAATTTTTTTCTTGTCTATATATATTCTCTCTATTTTAATATATGTGATGCATCTTAAATAAGATATATTACATACTTTAACATGTAAGATGACCGTATGATATATAAAATATTTAAATGAGAAAATGTATATTACTTGGGAGTTAATATATATAGTCTTAGAATCATTAAGAAAAACGAAAAAAAGAAGTTTTAGTTGTTAAATACGAAATCAAATTTGCTCTTTATTTCAAATGAGGGGGCACAAAGGTCGATTTGATTTACATTTTAATTGGAAAAAACCTAAACTAACTATTTTATTTAATTAGTTCTTAAAATTAAATCAAATCATATAAAGTTGGATTTTTATAGTTTCGACTTTAGTCTATTCTTTTGATTTATTTTATATTTTTTTATAATTACACGGTGATTGAAAAAGAGATCAAATATATTTTCAAATTTTTTGAAAAATAATAAAATTCACATGAATAGAAAATACTTTCAACATTCATTACAAAATAAATTGTTAACTTCTAAATCGAAACTATAACAGTAAAATTGTAACTTTCATCCTCACACAAAATAAAATATTTTCAAAAGCTTGTCTCTTTAGTTTCTTCCAACACCTCCATTTGAGAAGACAAAGAGAGGAGAGTGCTTCACATTCATCCTCTCTCAGGTTCTTCTTCTTCTCTGTTTCTTTAACTTATTGTTTTCTTCATTGTTAACACAAACTCTCTTCGTTTATGGTTCTTGTTCTATAGACTATTGGTATCAAGATTGCATTTTTATTGTTTGGGTATGCTTTAATATGATGAAATTGAAGTGGGGTTTGGTTAAAACTTGATGGAGTTAATGTTTTTCAAGGACATGGTGTGTTGGTAGGTGTAGATCTATCATGGATGTGTTTCAGTAATGGCGGAATTAGGATTTTCACTAGGTTGAAATGGGAATAATATGTTTTTAAGTTTTGGATAACTAAAGCAGCACTTATTTTACTTGGATTTGATACACTTGAGATGTTAGTCTTTCGGAAACTATCTTTTTATCAGTTCACAAGTAAACTATGTAGTGTGTACTCTAACCGGACAATTTCGAGATTCCTTACATAGTGTGGTCTTGTTTAATTTATGCAGATTCTTGTTGTAGTAGTCATTTGATGTTATGCTTCCAAATGGGAAAAAACAACTTTTACCTCTGCGATGTACTTAGCAGCCTTCCTGATAGTATAATTGATGACATTCTAACGAGGTTGCCTTTACGAAATGTTGTGAGGACAAGCATCTTATCAAGGAAATGGCGATATAATTGGCATAGACTTCCGCAGCTGAAATTTGATCAAACACTTTAGAAAACAACAGAGTACTTGATATCACTTGATATATTTCCTCTCTAGGAATGTCATTCAACATCTTGTCCTTAATCCTCCATTTAGGAGTAAGCCATATGAATTGCCTTCTGCATTTTTTACATGTTCACAATTGAGGCATCTGTTTCTCAAGGACTGTCTAATACGTCCTCATCCGGTTGAGGGATGTGATTGGTTAATTAGCTTTGAACTAATTGAAGTCAATATTTCTTCTGAATTAGTTGGAAGTGTAATCTCACATTTCCCATTGCTTGAGAATTTGGTGTTGCAACATGATGCGATCACAAAATAACATTGAAATTAGTGCTCTCAAACTAAGGTCAATTATTTTCATTGGCAATATAAAGTTTTTACATTTAAAGAATGTCCCTCTTCTTTCCAAAGTTTCATATGAGCCTACAGAATTTTTGGTAGAGGTAGAACATGATGTTGACATGATTTTTGAGTCTATTCCTGCTCTCGAGAATCTTTGCTGGAATCACAAGTATGTTGAGGTAATATATCTTCATAACTTGCATTTTCATAACTTTGAGTCATCCTGATTTTTGACATTTTCTTCCTAGGACGTGTATATTGGACCGGCTCCCTTATGCTCTTTTCTATATTAAATGCCTTCACATATCTTGCCTTAATCTAGGAGTATTCTTTGATCTTTAATTTGCTCTTTTCTTGATAAGAAGCTCTCCTAATTTAGAAGAAATTGAAATCGAGGTTGTTAATGATGTTTACTTTTCTCTCTCTTTTTCGTATGCATTGACTTTCTTATGATCTTCAATTTTAAATCAAGGCTGATTGTTTTTCTTAATCTTTCTTAGAACTATTTTGAACATGCTCGCCAGAAGGCTGTTGATTTATGATGTAACAGGAGTAGCATCTCAAATGCAGCTTATCAAGGTTTTATTGGCCAAGTCTCCAACATCTGTCAGAATGATAACCAAGCCCTTGAAATGGAAGATAAAGAGTCATTTAAAGTACTCGCTGAGGTAACAGAATTTCAGCGTACATCATCTAAAGCAGAAGTTCTGTATAGTGTAGATTAGAATCAATATTAAGATCCTGTTTGATTAACTAGTCTTTAATCAGATCATAATCTTTTGCTAAAATGTTTGAAATCGTAAAAAGAATGTTGATACAGCAGTAAGGCTGTTATTTTGCATTTGCCACTGTGAAGACCATCAGTCTGTGAACATAAGTGAATTTGGATGTATGTTTTTGATTAATTTGTTTCTATGTGTGTTCTTTGAATGATCTATGGGATGACGCTTTGGTTGGTTATTGATCTTTTTAATATATTCATTGTGGTCCTCATGGTTATTGTGCATTCTTTTTTATTTGATATGAACATGACATGAGTTGAGCATAAATGGAATAGTGAGGATTCATATAGTCGATTTCAACTAGCTGTTTTATGAGAGTCGATGACGTTGTTGACATATTGCTCTGAATAGTGAGAAAGAATAAAATTCGATCAAATCTCTTGATCTCAATGGTTAATAAACAATACCCCTTTTGAATGGAAAAGATAATCCCTTTCAACAACATTTTTCAATAAAAATTATGGTACAATATACATTATAAGCTGAATTGAATTTCAACAATATTATTCTTACAAGTTCAATGTTACAATTCCACACCCAAAAAAAAATATCACTAAAAACAGGAAAAGAGAAAAAAAGGGGGGTGGGGTAGGTTTGGGGTCAGTTGTTCATAAATCAGTCTTTTTCCAATATAGTCAAAACATATCCCATTCCTTTATGCAGCTTCCATATAATCATATATATACAAGCTCAATCGAACCCTACCGCAGACAAAAAGTCTGGTATATAAGTGGAGAAGAGTAAAGGGGCGGGTCTATAATCCACTGAGTTATAAACCGTGCACTATTGACCCTCGAGGACTTCTTGGTTATCAAAAAAACAAAAAAAAACTCAATAACATACAACAATATTACCAGAGAATTCTATCTTAGATGCCCTTTTTTTTGTTTCATCTAATTGACTATCTTTTATAATCTAAAGCAGAAGTTTTATATCTTGTTGATTAGTATCGTTATCACAATCCTTCTTAATCTTTAGCTAAAATGTTTTGGAAGGACAAACAGAAACGAGACCTTTGGTTGATGGAGTAGTAAGGCTGTGTTTTTCCTTTTCTTCAAGGTGATTTTATCTGCTTGGAAACATAGAATTGTGAATGTTTTGAATACTCTGTTTGATAACAGAGATGGTTTTTACATTTTATGGTTGTTCTTAAATGATGTATGATTTGAGACTTTGGTTGTTTATTTCGAAGTTAATTTGTGTGTTGAATTTTCTTAGGGATCTTGAAACATTGAGTGGAAACTTACTTTTTGGCTAGTATTTTAGGCCCTTTTCTTTTTTTTATAATGAAGGGTAATTTTGTACCTAAAATACCCTTGAAGTATTGAAAATGGTACAAAATTACTCTTTATCCATCTGTTGGCTCCAAAATACCCTCTTCACCCACATATTGGGTCCAAAAAAACCCTTGTCATCCATCTTTTGGTTAAAAATTGATCGTTAAGTAAGTGGTCAATTTTTAACCCAAAGGTGGATGACAAGGGTATTTTTGAGCAAATAGGTGAATGAAAAGTGCATTTTGGAGCAATAGGCGGATGAAGGATAATTTTGTACCATTTTCAATAATTCAAGGATATTTTAGGCCCTTTCCGTATACAAAATCATAAATAAAAAAAATAAATTTATTGATTTGGACTAAAATAATTTTTTTCTGAAGGTTTACAAACTTTATTACATTTACAAAAATAAAAAAGGAA</genome_strand>
        <mrna_strand>TCGAGATGTTGTAAGAGTTAGTACACTTTCAAAGGACTGGCAATATAATTTCTAGAGAATTCCACATGTGAAATTTTATCAAACAGTGTGGAAAACACCCGAGGACTTGACATCCCCTGCCATTGGATTTATTCCGATTCTTGATAGTTTGCTCAGGTTTCATAGAGGAATAATATTGAAGGTCACCCTCAATATTATTAGTCTAATAATGTGTCCTAATGTTGATCGTCTAATTTTTTCCCTCGACATTGATCACATTCAACATTTTGTCCTTGAAATTCCATTTACTTATCCTCCATTTAGGTTGCCCAACTTCTTTTTT-ATTGTTCAGCATTGAGGCATTTCTATCTCATGGGATGTGAAATACAACTTTCATGTTTCTTTAAGGGATTTAATAAGTTGATTAGGCTAATATTGAAATCTGTATCGTTATCTTCTGATACGTTTGAAAATTTGATCTCTAATTGCCCGTTGCTTGAGGATTTGGTGCTAAAAGACACAGACAATTCGTACCTCATTATTAGTAATTCTCTTAAGCTAAGGTCATTTGTCTTTCGTGGCGATATACAATTGATACATCTTGAAAATGTCCCTGTTCTTTCCAATGTTCTGTATGCGCCTAGAGAATTAGTTCTAGAGGACGAAGATGATTTTGTCAATATTTTTTCGTCTATTGTTGCTCTCCAGTGTTTCAGCATGGATCTTTTTGAG..............................................................................................TTCGATAATGGAACAACTAAAGTTATACCAACAAGGCTTCCATCAGTTCTTAACTGTCTGAAATGCCTATTCATGTCTTGGATTACTCTTGGAGAGTTTTTTAAGCTTTCGTTTGCTCTTTGCATTATAAAGAGCTCTCCAAATTTGGAAGAAATTGAAATTAAG.............................................................................................GAATTTTTCTTTAGTGATGGAGATTATTTCGAATCTGTGTCCCAGGAGGTTGTTGATGAGATTCTTCCAAGCTTTTCGGATATCACATTTAATCATCTAAGGACAGTTAAGTTTTATGATATACCATTAGAAGAGGTTGAAATACAGCTTATCAAGGTTTTATTGGCAAAGCCTCCAACATTGGTGAAAATGGTAATCAAGCCTCGTCAAATGGAAACTATCAAATCTCTCAACTTACTCGCGGAGATAACAAAGTTTTAACAGGCACCATCTAAAGCAGAAGTTGTGTATCTTTTTTATTAGTATCGTTATCACAATCCTTCCTAATCTTTGGTTAAAATATTTTTGAAGTACAAACAGAAACGAGACATTTGGTTGATGGAGTAACAAGACTGTGTTTTGCCTTCGCTTTAAGGTACTATAAAGATTTTATCTGCTTGGAAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAATTGTATATGTTTTGTATACTCTGTTTGGGAACAGAGATGGTTTTTACATTTCATGGATGCTCTTAAATGATATATGATTTGAGTCTTTGGTTGTTTATTGCAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161A14-QW2M3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161A14-QW2M3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161A14.1" temp_strand="-" temp_description="C05HBa0161A14.1  AC225118.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0161A14 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="83737" stop="82705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83437" g_stop="83005" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161A14.1" gen_strand="-" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161A14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83437" e_stop="83005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCACTTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTATAGGCCCAGTAGTTAGGCGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTAATTGATCATCTTTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCATTCACCCCATCCTCCCCCTCTCTTATCACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTGCTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161A14-QW2M3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161A14-QW2M3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161A14.1" temp_strand="+" temp_description="C05HBa0161A14.1  AC225118.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0161A14 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="82772" stop="83925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83072" g_stop="83625" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161A14.1" gen_strand="+" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161A14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83072" e_stop="83625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGATAAGAGAGGGGGAGGATGGGGTGAATGAACAAGTGCAAAATGAGGAAATGCCACCCCAACCTACCCCAAAGATGATCAATTAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCGCCAACACCTCCGGTTTCAGAAGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGCCTAACTACTGGGCCTATAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAAGTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGCTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCACTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161A14-QW2M3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161A14-QW2M3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161A14.1" temp_strand="-" temp_description="C05HBa0161A14.1  AC225118.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0161A14 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="84812" stop="82776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84512" g_stop="83076" g_length="1437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1437" r_length="1437" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161A14.1" gen_strand="-" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161A14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84512" e_stop="83076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACTTGTGATGACAGCATCAGATGCCTCCGCTTCAGATCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTGGTGGCCCCGGTTTGCCCATTAGCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTTTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCAGTCAGAGGTAGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGGGGTGAAGTCGTCTGGCTTTACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCTGAAATCCGCAATCCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGATCGGGGGATATACTTCTCCATAAACAAACTAGAGAGTGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATAGCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCACTTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTATAGGCCCAGTAGTTAGGCGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTAATTGATCATCTTTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCATTCACCCCAT-CCTCCCCCTCTCTTATCACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161A14-QW2M3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161A14-QW2M3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161A14.1" temp_strand="+" temp_description="C05HBa0161A14.1  AC225118.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0161A14 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="83399" stop="85443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83699" g_stop="83885" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83886" i_stop="84629" i_length="744">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84630" g_stop="85143" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161A14.1" gen_strand="+" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161A14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83699" e_stop="83885"/>
          <exon e_start="84630" e_stop="85143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGGATTGCGGATTTCAGCCTTACAGGTAGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTAAAGCCAGACGACTTCACCCCAACATCGACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACTACCTCTGACTGGTCAACACTTCTCCGAGGGGCATATGATCGACTCCAAAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAGAAATTGTCCCAGACCAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAAAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCAGAGCTAATGGGCAAACCGGGGCCACCACATCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGATCTGAAGCGGAGGCATCTGATGCTGTCATCACAAGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCCACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAACTGGATAATTCTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATTCTAAAATGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTCCACATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAGAGGTTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTGGTTTGCGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGATCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCAGATGTGCATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161A14-QW2M3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161A14-QW2M3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161A14.1" temp_strand="-" temp_description="C05HBa0161A14.1  AC225118.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0161A14 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="84816" stop="83658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84516" g_stop="83958" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161A14.1" gen_strand="-" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161A14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84516" e_stop="83958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACTTGTGATGACAGCATCAGATGCCTCCGCTTCAGATCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTGGTGGCCCCGGTTTGCCCATTAGCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTTTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCAGTCAGAGGTAGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161A14-QW2M3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161A14-QW2M3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161A14.1" temp_strand="-" temp_description="C05HBa0161A14.1  AC225118.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0161A14 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="85425" stop="84069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85126" g_stop="84369" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161A14.1" gen_strand="-" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161A14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85126" e_stop="84369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGATCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCGCAAACCACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACAACCTCTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGTGGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGAATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAGAATTATCCAGTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTGGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACTTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161A14-QW2M3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161A14-QW2M3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161A14.1" temp_strand="-" temp_description="C05HBa0161A14.1  AC225118.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0161A14 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="86015" stop="84703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85715" g_stop="85003" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161A14.1" gen_strand="-" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161A14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85715" e_stop="85003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGTCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTTAGCATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAAGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGTCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGTGAGGAAGAGGGTACTTGTTCTTAATAGTTACTTTATTCAGTTGTCTGTAGTCTATGCACATCTGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0161A14-QW2M3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0161A14-QW2M3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0161A14.1" temp_strand="-" temp_description="C05HBa0161A14.1  AC225118.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0161A14 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="87496" stop="86719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87196" g_stop="87020" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0161A14.1" gen_strand="-" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0161A14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87196" e_stop="87020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATAAAATGCTTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>10</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="11785" PGL_stop="13133"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11785" e_stop="12073"/>
            <exon e_start="12263" e_stop="13014"/>
            <exon e_start="13118" e_stop="13133"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.630" e_score="0.997"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11785" e_stop="12073" e_length="289"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12074" i_stop="12262" i_length="189"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="12263" e_stop="13014" e_length="752"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.630">
            <gDNA_intron_boundary i_start="13015" i_stop="13117" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.750">
            <gDNA_exon_boundary e_start="13118" e_stop="13133" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11785" stop="12073"/>
              <exon start="12263" stop="13014"/>
              <exon start="13118" stop="13133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323748" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTATCCACAGGGATGTGAAGGCAGCAAATATATTGCTCGACGATGACTGTGAGGCTGTCGTGGGAGATTTTGGATTGGCAAAGCTATTGGATCATCGCGATTCACATGTCACAACTGCAGTTAGGGGAACAGTAGGACATATAGCTCCTGAGTATCTCTCTACAGGACAGTCCTCTGATAAAACAGATGTTTTCGGGTTTGGAATTCTCCTGCTAGAGTTGATATCTGGCCAGAGAGCTCTTGAATTTGGTAAAGCAGCAAATCAGAAAGGTGTTATGCTTGATTGG : GTGAAGAAGATTCACCTGGAGAAAAAGCTTGATTTGCTGGTGAGCAAGGACTTAAAGGACAAATATGATCGGATCGAGCTTGAGGAAATGGTACAAGTAGCTCTAATATGCACTCAGTATCACCCTAGTCATAGACCAAAAATGTCAGAAGTGGTAAGAATGCTCGAAGGAGACGGACTTGCAGAGAAATGGGAAGCTTCACAAAGAGCAGAATCTACGCGATGCAGAGCCAATGAGTTCTCGTCTTCAGAAAGATATTCTGATCTTACTGATGATTCTTCATTGCTTGTTCAAGCAATGGAATTATCAGGACCAAGGTGATGTAGATTATAAAAGATAGATAATTAGATGAAACAAAAAAAGGGCATCTGAGATAGAATGCTCAAGTAATATTGCTGTATGTTATTGAGCTTGTTTTTTTGTTTTCTTTTATTAACCGAGAAGTCCTCGAGGGTCAATAGTGCACTGTTCATAACTCAGTGGATGATAGAACCGCCCCTTTACTCTTCTCCAGTTATATACCAGACGCGGTAGGGTTCAATTGAGCTTGTATATATATGATTATATGGAAGCTGCATAAAGGAATGAGATATGTTCTGACTGTATAGGAAAAAGACTGATGTATGCACAACTGACCCCTCACCCCTTTTTTTCCCTCTTCATGTTTTGAGTGATAATTTTTCTAGGATGTGAAATTGTAACTTTGAGCTTGTAAGAATAATATTGTTGAAATTCAATTTCAGCTTATAAAT : AACAAGAAACATAAAA</gDNA_template>
            <first_frame> D  Y  P  Q  G  C  E  G  S  K  Y  I  A  R  R  *  L  *  G  C  R  G  R  F  W  I  G  K  A  I  G  S  S  R  F  T  C  H  N  C  S  *  G  N  S  R  T  Y  S  S  *  V  S  L  Y  R  T  V  L  *  *  N  R  C  F  R  V  W  N  S  P  A  R  V  D  I  W  P  E  S  S  *  I  W  *  S  S  K  S  E  R  C  Y  A  *  L   : G  E  E  D  S  P  G  E  K  A  *  F  A  G  E  Q  G  L  K  G  Q  I  *  S  D  R  A  *  G  N  G  T  S  S  S  N  M  H  S  V  S  P  *  S  *  T  K  N  V  R  S  G  K  N  A  R  R  R  R  T  C  R  E  M  G  S  F  T  K  S  R  I  Y  A  M  Q  S  Q  *  V  L  V  F  R  K  I  F  *  S  Y  *  *  F  F  I  A  C  S  S  N  G  I  I  R  T  K  V  M  *  I  I  K  D  R  *  L  D  E  T  K  K  G  H  L  R  *  N  A  Q  V  I  L  L  Y  V  I  E  L  V  F  L  F  S  F  I  N  R  E  V  L  E  G  Q  *  C  T  V  H  N  S  V  D  D  R  T  A  P  L  L  F  S  S  Y  I  P  D  A  V  G  F  N  *  A  C  I  Y  M  I  I  W  K  L  H  K  G  M  R  Y  V  L  T  V  *  E  K  D  *  C  M  H  N  *  P  L  T  P  F  F  P  S  S  C  F  E  *  *  F  F  *  D  V  K  L  *  L  *  A  C  K  N  N  I  V  E  I  Q  F  Q  L  I  N  :  N  K  K  H  K  </first_frame>
            <second_frame>  I  I  H  R  D  V  K  A  A  N  I  L  L  D  D  D  C  E  A  V  V  G  D  F  G  L  A  K  L  L  D  H  R  D  S  H  V  T  T  A  V  R  G  T  V  G  H  I  A  P  E  Y  L  S  T  G  Q  S  S  D  K  T  D  V  F  G  F  G  I  L  L  L  E  L  I  S  G  Q  R  A  L  E  F  G  K  A  A  N  Q  K  G  V  M  L  D  W  :  V  K  K  I  H  L  E  K  K  L  D  L  L  V  S  K  D  L  K  D  K  Y  D  R  I  E  L  E  E  M  V  Q  V  A  L  I  C  T  Q  Y  H  P  S  H  R  P  K  M  S  E  V  V  R  M  L  E  G  D  G  L  A  E  K  W  E  A  S  Q  R  A  E  S  T  R  C  R  A  N  E  F  S  S  S  E  R  Y  S  D  L  T  D  D  S  S  L  L  V  Q  A  M  E  L  S  G  P  R  *  C  R  L  *  K  I  D  N  *  M  K  Q  K  K  G  I  *  D  R  M  L  K  *  Y  C  C  M  L  L  S  L  F  F  C  F  L  L  L  T  E  K  S  S  R  V  N  S  A  L  F  I  T  Q  W  M  I  E  P  P  L  Y  S  S  P  V  I  Y  Q  T  R  *  G  S  I  E  L  V  Y  I  *  L  Y  G  S  C  I  K  E  *  D  M  F  *  L  Y  R  K  K  T  D  V  C  T  T  D  P  S  P  L  F  F  P  L  H  V  L  S  D  N  F  S  R  M  *  N  C  N  F  E  L  V  R  I  I  L  L  K  F  N  F  S  L  *  I :   T  R  N  I  K </second_frame>
            <third_frame>   L  S  T  G  M  *  R  Q  Q  I  Y  C  S  T  M  T  V  R  L  S  W  E  I  L  D  W  Q  S  Y  W  I  I  A  I  H  M  S  Q  L  Q  L  G  E  Q  *  D  I  *  L  L  S  I  S  L  Q  D  S  P  L  I  K  Q  M  F  S  G  L  E  F  S  C  *  S  *  Y  L  A  R  E  L  L  N  L  V  K  Q  Q  I  R  K  V  L  C  L  I  G :   *  R  R  F  T  W  R  K  S  L  I  C  W  *  A  R  T  *  R  T  N  M  I  G  S  S  L  R  K  W  Y  K  *  L  *  Y  A  L  S  I  T  L  V  I  D  Q  K  C  Q  K  W  *  E  C  S  K  E  T  D  L  Q  R  N  G  K  L  H  K  E  Q  N  L  R  D  A  E  P  M  S  S  R  L  Q  K  D  I  L  I  L  L  M  I  L  H  C  L  F  K  Q  W  N  Y  Q  D  Q  G  D  V  D  Y  K  R  *  I  I  R  *  N  K  K  R  A  S  E  I  E  C  S  S  N  I  A  V  C  Y  *  A  C  F  F  V  F  F  Y  *  P  R  S  P  R  G  S  I  V  H  C  S  *  L  S  G  *  *  N  R  P  F  T  L  L  Q  L  Y  T  R  R  G  R  V  Q  L  S  L  Y  I  Y  D  Y  M  E  A  A  *  R  N  E  I  C  S  D  C  I  G  K  R  L  M  Y  A  Q  L  T  P  H  P  F  F  S  L  F  M  F  *  V  I  I  F  L  G  C  E  I  V  T  L  S  L  *  E  *  Y  C  *  N  S  I  S  A  Y  K   : *  Q  E  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161A14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11786" stop="12073"/>
                    <exon start="12263" stop="12583"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIHRDVKAANILLDDDCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSDKTDVFGFGILLLELISGQRALEFGKAANQKGVMLDWVKKIHLEKKLDLLVSKDLKDKYDRIELEEMVQVALICTQYHPSHRPKMSEVVRMLEGDGLAEKWEASQRAESTRCRANEFSSSERYSDLTDDSSLLVQAMELSGPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="68826" PGL_stop="62864"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68826" e_stop="68115"/>
            <exon e_start="68020" e_stop="67856"/>
            <exon e_start="67762" e_stop="67318"/>
            <exon e_start="63479" e_stop="63370"/>
            <exon e_start="62879" e_stop="62864"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.916"/>
          <exon-intron don_prob="0.967" acc_prob="0.998" e_score="0.921"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.910"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.891"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="68826" e_stop="68115" e_length="712"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68114" i_stop="68021" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="0.921">
            <gDNA_exon_boundary e_start="68020" e_stop="67856" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67855" i_stop="67763" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="0.910">
            <gDNA_exon_boundary e_start="67762" e_stop="67318" e_length="445"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67317" i_stop="63480" i_length="3838"/>
          </intron>
          <exon e_serial="4" e_score="0.891">
            <gDNA_exon_boundary e_start="63479" e_stop="63370" e_length="110"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63369" i_stop="62880" i_length="490"/>
          </intron>
          <exon e_serial="5" e_score="0.875">
            <gDNA_exon_boundary e_start="62879" e_stop="62864" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68826" stop="68115"/>
              <exon start="68020" stop="67856"/>
              <exon start="67762" stop="67318"/>
              <exon start="63479" stop="63370"/>
              <exon start="62879" stop="62864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326365" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGAGATGTTGTTAGAGTTAGTACACTTTCGAAGGACTGGCAATATATTTGCTGGAGAATTCCAAATGTGAAGTTTGATCAAACAGTGTGGAAAACACCAGAGGACTTGACGTCCCCTACCATTGGATTTATTCCAATTCTTGAGAGTTTCCTCAGGTTTCATAGAGGAATAATATTGAAGGTCACCCTCAATATTACTAGTCTAATAGTGTGTCCTGATGTTGATCGTTTGATTTTTTCCCTCGACACTGATCATCTTCAATATTTTGTCCTTAAACTTCCATTTACTTATCCTCCATACAGGTTGCCCAACTTCTTTTTTAATTGTTCAGCATTGAGGCATTTGTATCTCAAGGAATGTGAAATACAGCTTCCATGTTTCTTTAAGGGATTTAGTCAGTTGATTAGGCTAATATTGAAATCTGTCACGTTATCTTCTGATACGTTTGAAAGTTTGATCTCTAATTGCCCGTTGCTTGGGGATTTGGTGCTAAAAGACATAGACAATCTGTACCCCATGAGTATTAATGCTCCGAAGCTAAGGTCATTTGTCTTTCATGGCGATATACAATTGATACATCTTGAAAATGTCCCTGTTCTTTCCAATGTTCTGTATGTGCCTAGAGAATTAGTTCTACAGGGCGAAGATGATTTTGTCAATATTTTTTCGTCTATCCCTGCTCTCGAGTGTTTCAGCTGGGATTTTTTTGAG : GTCGATAAAGGATCAACTAAAGTTATACCAACAAGGCTTCCATCAGCCCTTAACTGTCTGAAACGCCTATTCATGTCTTGGATTACTCTTGGAGAGTTTTTTGAGCTTTCGTTTGCTCTTTGCATAATACGAAGCTCTCCAAATTTGGAAGAAATTGAAAGCAAG : GAATGTATCCTTAGTGATGGAGATTATTTCGAATCTGTGCCCCAGGAGGTTGTCGATGAGATTCCTGCAAGCTTTTCGGATATCACATTTCATCATCTGAGGACAGTTATGTTTTATGATATACAATTAGAAGAGGTTGAAATGCAGCTTATCAAGGTTTTATTGGCAAAGTCTCCAGCACTGGTGAAAATGGTAATCAAGCCTCGTCAAATGGAAACTAACAAATCTCTCAACGTACTCGCGGAGATAACAAAGTTTCAACAGGCATCATCTAAAGTAGAAATTGTTTATCTTGCTGATTAGTATCGTTATCACAATCTTTCTTAATCTTTGGCATAAATATTTTGGAAGTACAAACTGAAACGAGACGTTTGGTTGATGGAGTAGCGTGGCTGTGTTTTGCGTTTGCTTTAAGGTACTATAAAGATTTTATCTGCTTGGAAAC : ATAGAATTGTGAATGTTTTGAATACTCTGTTTGATAACAGAGATGGTTTTTACATTTTATGGTTGTTCTTAAATGATGTATGATTTGAGACTTTGGTTGTTTATTTCGAA : AAAAATAAAAAAGGAA</gDNA_template>
            <first_frame> S  R  C  C  *  S  *  Y  T  F  E  G  L  A  I  Y  L  L  E  N  S  K  C  E  V  *  S  N  S  V  E  N  T  R  G  L  D  V  P  Y  H  W  I  Y  S  N  S  *  E  F  P  Q  V  S  *  R  N  N  I  E  G  H  P  Q  Y  Y  *  S  N  S  V  S  *  C  *  S  F  D  F  F  P  R  H  *  S  S  S  I  F  C  P  *  T  S  I  Y  L  S  S  I  Q  V  A  Q  L  L  F  *  L  F  S  I  E  A  F  V  S  Q  G  M  *  N  T  A  S  M  F  L  *  G  I  *  S  V  D  *  A  N  I  E  I  C  H  V  I  F  *  Y  V  *  K  F  D  L  *  L  P  V  A  W  G  F  G  A  K  R  H  R  Q  S  V  P  H  E  Y  *  C  S  E  A  K  V  I  C  L  S  W  R  Y  T  I  D  T  S  *  K  C  P  C  S  F  Q  C  S  V  C  A  *  R  I  S  S  T  G  R  R  *  F  C  Q  Y  F  F  V  Y  P  C  S  R  V  F  Q  L  G  F  F  *   : G  R  *  R  I  N  *  S  Y  T  N  K  A  S  I  S  P  *  L  S  E  T  P  I  H  V  L  D  Y  S  W  R  V  F  *  A  F  V  C  S  L  H  N  T  K  L  S  K  F  G  R  N  *  K  Q   : G  M  Y  P  *  *  W  R  L  F  R  I  C  A  P  G  G  C  R  *  D  S  C  K  L  F  G  Y  H  I  S  S  S  E  D  S  Y  V  L  *  Y  T  I  R  R  G  *  N  A  A  Y  Q  G  F  I  G  K  V  S  S  T  G  E  N  G  N  Q  A  S  S  N  G  N  *  Q  I  S  Q  R  T  R  G  D  N  K  V  S  T  G  I  I  *  S  R  N  C  L  S  C  *  L  V  S  L  S  Q  S  F  L  I  F  G  I  N  I  L  E  V  Q  T  E  T  R  R  L  V  D  G  V  A  W  L  C  F  A  F  A  L  R  Y  Y  K  D  F  I  C  L  E  T :   *  N  C  E  C  F  E  Y  S  V  *  *  Q  R  W  F  L  H  F  M  V  V  L  K  *  C  M  I  *  D  F  G  C  L  F  R   : K  K  *  K  R   </first_frame>
            <second_frame>  R  D  V  V  R  V  S  T  L  S  K  D  W  Q  Y  I  C  W  R  I  P  N  V  K  F  D  Q  T  V  W  K  T  P  E  D  L  T  S  P  T  I  G  F  I  P  I  L  E  S  F  L  R  F  H  R  G  I  I  L  K  V  T  L  N  I  T  S  L  I  V  C  P  D  V  D  R  L  I  F  S  L  D  T  D  H  L  Q  Y  F  V  L  K  L  P  F  T  Y  P  P  Y  R  L  P  N  F  F  F  N  C  S  A  L  R  H  L  Y  L  K  E  C  E  I  Q  L  P  C  F  F  K  G  F  S  Q  L  I  R  L  I  L  K  S  V  T  L  S  S  D  T  F  E  S  L  I  S  N  C  P  L  L  G  D  L  V  L  K  D  I  D  N  L  Y  P  M  S  I  N  A  P  K  L  R  S  F  V  F  H  G  D  I  Q  L  I  H  L  E  N  V  P  V  L  S  N  V  L  Y  V  P  R  E  L  V  L  Q  G  E  D  D  F  V  N  I  F  S  S  I  P  A  L  E  C  F  S  W  D  F  F  E  :  V  D  K  G  S  T  K  V  I  P  T  R  L  P  S  A  L  N  C  L  K  R  L  F  M  S  W  I  T  L  G  E  F  F  E  L  S  F  A  L  C  I  I  R  S  S  P  N  L  E  E  I  E  S  K  :  E  C  I  L  S  D  G  D  Y  F  E  S  V  P  Q  E  V  V  D  E  I  P  A  S  F  S  D  I  T  F  H  H  L  R  T  V  M  F  Y  D  I  Q  L  E  E  V  E  M  Q  L  I  K  V  L  L  A  K  S  P  A  L  V  K  M  V  I  K  P  R  Q  M  E  T  N  K  S  L  N  V  L  A  E  I  T  K  F  Q  Q  A  S  S  K  V  E  I  V  Y  L  A  D  *  Y  R  Y  H  N  L  S  *  S  L  A  *  I  F  W  K  Y  K  L  K  R  D  V  W  L  M  E  *  R  G  C  V  L  R  L  L  *  G  T  I  K  I  L  S  A  W  K   : H  R  I  V  N  V  L  N  T  L  F  D  N  R  D  G  F  Y  I  L  W  L  F  L  N  D  V  *  F  E  T  L  V  V  Y  F  E  :  K  N  K  K  G  </second_frame>
            <third_frame>   E  M  L  L  E  L  V  H  F  R  R  T  G  N  I  F  A  G  E  F  Q  M  *  S  L  I  K  Q  C  G  K  H  Q  R  T  *  R  P  L  P  L  D  L  F  Q  F  L  R  V  S  S  G  F  I  E  E  *  Y  *  R  S  P  S  I  L  L  V  *  *  C  V  L  M  L  I  V  *  F  F  P  S  T  L  I  I  F  N  I  L  S  L  N  F  H  L  L  I  L  H  T  G  C  P  T  S  F  L  I  V  Q  H  *  G  I  C  I  S  R  N  V  K  Y  S  F  H  V  S  L  R  D  L  V  S  *  L  G  *  Y  *  N  L  S  R  Y  L  L  I  R  L  K  V  *  S  L  I  A  R  C  L  G  I  W  C  *  K  T  *  T  I  C  T  P  *  V  L  M  L  R  S  *  G  H  L  S  F  M  A  I  Y  N  *  Y  I  L  K  M  S  L  F  F  P  M  F  C  M  C  L  E  N  *  F  Y  R  A  K  M  I  L  S  I  F  F  R  L  S  L  L  S  S  V  S  A  G  I  F  L  R :   S  I  K  D  Q  L  K  L  Y  Q  Q  G  F  H  Q  P  L  T  V  *  N  A  Y  S  C  L  G  L  L  L  E  S  F  L  S  F  R  L  L  F  A  *  Y  E  A  L  Q  I  W  K  K  L  K  A  R :   N  V  S  L  V  M  E  I  I  S  N  L  C  P  R  R  L  S  M  R  F  L  Q  A  F  R  I  S  H  F  I  I  *  G  Q  L  C  F  M  I  Y  N  *  K  R  L  K  C  S  L  S  R  F  Y  W  Q  S  L  Q  H  W  *  K  W  *  S  S  L  V  K  W  K  L  T  N  L  S  T  Y  S  R  R  *  Q  S  F  N  R  H  H  L  K  *  K  L  F  I  L  L  I  S  I  V  I  T  I  F  L  N  L  W  H  K  Y  F  G  S  T  N  *  N  E  T  F  G  *  W  S  S  V  A  V  F  C  V  C  F  K  V  L  *  R  F  Y  L  L  G  N  :  I  E  L  *  M  F  *  I  L  C  L  I  T  E  M  V  F  T  F  Y  G  C  S  *  M  M  Y  D  L  R  L  W  L  F  I  S  K :   K  I  K  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161A14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68825" stop="68115"/>
                    <exon start="68020" stop="67856"/>
                    <exon start="67762" stop="67460"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1176</number_coding_nucleotides>
                  <number_encoded_amino_acids>392</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDVVRVSTLSKDWQYICWRIPNVKFDQTVWKTPEDLTSPTIGFIPILESFLRFHRGIILKVTLNITSLIVCPDVDRLIFSLDTDHLQYFVLKLPFTYPPYRLPNFFFNCSALRHLYLKECEIQLPCFFKGFSQLIRLILKSVTLSSDTFESLISNCPLLGDLVLKDIDNLYPMSINAPKLRSFVFHGDIQLIHLENVPVLSNVLYVPRELVLQGEDDFVNIFSSIPALECFSWDFFEVDKGSTKVIPTRLPSALNCLKRLFMSWITLGEFFELSFALCIIRSSPNLEEIESKECILSDGDYFESVPQEVVDEIPASFSDITFHHLRTVMFYDIQLEEVEMQLIKVLLAKSPALVKMVIKPRQMETNKSLNVLAEITKFQQASSKVEIVYLAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="85715" PGL_stop="83005"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85715" e_stop="83005"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="85715" e_stop="83005" e_length="2711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85715" stop="85003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85126" stop="84369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84516" stop="83958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84512" stop="83076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83437" stop="83005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGTCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTTAGCATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAAGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGTCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGTGAGGAAGAGGGTACTTGTTCTTAATAGTTACTTTATTCAGTTGTCTGTAGTCTATGCACATCTGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGATCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCGCAAACCACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACAACCTCTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGTGGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGAATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAGAATTATCCAGTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTGGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACTTGTGATGACAGCATCAGATGCCTCCGCTTCAGATCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTGGTGGCCCCGGTTTGCCCATTAGCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTTTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCAGTCAGAGGTAGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGGGGTGAAGTCGTCTGGCTTTACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCTGAAATCCGCAATCCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGATCGGGGGATATACTTCTCCATAAACAAACTAGAGAGTGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATAGCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCACTTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTATAGGCCCAGTAGTTAGGCGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTAATTGATCATCTTTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCATTCACCCCATCCTCCCCCTCTCTTATCACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTGCTCTTC</gDNA_template>
            <first_frame> E  S  L  D  E  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  S  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  *  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  K  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  S  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  V  R  K  R  V  L  V  L  N  S  Y  F  I  Q  L  S  V  V  Y  A  H  L  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  F  *  L  S  *  L  R  G  I  H  S  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  A  N  H  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  T  S  T  N  H  F  L  S  T  K  K  G  D  D  V  D  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  H  F  R  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  R  I  I  Q  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  G  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  S  P  R  E  S  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  G  G  P  G  L  P  I  S  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  F  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  W  S  G  T  I  S  P  N  M  S  N  L  P  T  S  I  T  F  F  G  V  D  H  M  P  L  G  E  V  L  T  S  Q  R  *  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  R  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  W  G  E  V  V  W  L  Y  S  F  H  F  Y  H  K  V  Y  H  F  L  E  G  F  C  R  C  R  Y  L  *  G  *  N  P  Q  S  *  P  Q  P  L  H  K  P  A  N  P  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  S  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  R  S  G  D  I  L  L  H  K  Q  T  R  E  *  G  P  S  H  R  W  C  L  Y  W  L  T  L  D  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  S  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  H  F  Q  E  L  T  E  K  F  M  L  I  T  C  H  Y  R  P  S  S  *  A  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  F  *  N  R  R  C  W  R  R  K  H  W  R  C  L  T  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  H  F  L  I  L  H  L  F  I  H  P  I  L  P  L  S  Y  H  F  L  S  R  W  R  S  H  R  P  S  I  R  W  A  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  S  C  R  C  S   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  S  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  R  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  *  G  R  G  Y  L  F  L  I  V  T  L  F  S  C  L  *  S  M  H  I  *  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  S  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  Q  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  Q  P  L  L  I  I  F  L  A  R  R  K  E  T  M  W  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  I  L  E  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  E  L  S  S  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  L  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  L  A  L  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  G  L  G  Q  F  L  L  I  C  P  I  S  P  H  P  *  H  S  L  E  S  I  I  C  P  S  E  K  C  *  P  V  R  G  S  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  E  P  L  N  S  P  P  F  R  S  L  F  D  V  D  V  G  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  P  D  L  N  P  F  T  N  R  R  I  R  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  D  R  G  I  Y  F  S  I  N  K  L  E  S  E  A  Q  V  I  G  G  A  S  I  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  A  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  T  F  K  N  L  L  K  S  S  C  *  S  L  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  F  G  V  G  W  G  G  I  S  S  F  C  T  C  S  F  T  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  A  L  </second_frame>
            <third_frame>   I  P  *  R  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  V  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  L  A  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  V  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  G  T  C  S  *  *  L  L  Y  S  V  V  C  S  L  C  T  S  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  L  L  T  L  L  T  P  R  D  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  R  K  P  L  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  N  L  Y  *  S  F  S  *  H  E  E  R  R  R  C  G  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  N  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  Y  P  V  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  W  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  I  A  Q  G  K  R  N  N  G  P  Y  R  S  S  V  R  C  P  Y  H  V  V  M  W  W  P  R  F  A  H  *  L  C  R  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  L  V  W  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  I  L  W  S  R  S  Y  A  P  R  R  S  V  D  Q  S  E  V  V  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  N  P  V  L  *  C  K  N  H  *  T  H  L  P  F  E  A  F  L  M  S  M  L  G  *  S  R  L  A  L  L  L  P  L  L  S  Q  S  L  P  L  L  G  R  I  L  P  L  P  L  P  V  R  L  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  S  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  K  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  I  G  G  Y  T  S  P  *  T  N  *  R  V  R  P  K  S  *  V  V  P  L  L  V  D  T  R  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  *  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  L  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  L  G  V  E  T  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  H  V  V  L  L  K  P  E  V  L  A  Q  K  T  L  E  V  P  D  L  D  Q  I  T  R  *  D  K  P  E  P  N  *  S  S  L  G  *  V  G  V  A  F  P  H  F  A  L  V  H  S  P  H  P  P  P  L  L  S  L  P  Q  S  V  E  E  S  P  P  *  Y  Q  M  G  *  V  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161A14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84988" stop="84743"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNSQTTETDSIEGTWVVSSLRCAKKAKQPLLIIFLARRKETMWTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161A14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85451" stop="85212"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQAHERSKGIRKTKRHHYKFVMSIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161A14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84284" stop="84051"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGGPGLPISSAVLVTTITSTTTSSRITAFTMTTSTSSYWGSITWSGTISPNMSNLPTSITFFGVDHMPLGEVLTSQR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161A14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83228" stop="83007"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISQNLIDHLWGRLGWHFLILHLFIHPILPLSYHFLSRWRSHRPSIRWARCSSSSPRGRPPTTSTTASCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161A14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83203" stop="83006"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIIFGVGWGGISSFCTCSFTPSSPSLITSSVGGGVTALVSDGLGARPLPLEDVLPRPLPRPLAAAL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161A14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85519" stop="85322"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLSISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAARAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161A14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="7"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83974" stop="83780"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRSLFDVDVGVKSSGFTPSTSITKSTTSWKDFAVAATCKAEIRNPDLNPFTNRRIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="83072" PGL_stop="83625"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83072" e_stop="83625"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="83072" e_stop="83625" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83072" stop="83625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGATAAGAGAGGGGGAGGATGGGGTGAATGAACAAGTGCAAAATGAGGAAATGCCACCCCAACCTACCCCAAAGATGATCAATTAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCGCCAACACCTCCGGTTTCAGAAGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGCCTAACTACTGGGCCTATAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAAGTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGCTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCACTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  G  D  S  S  T  D  *  G  S  D  K  R  G  G  G  W  G  E  *  T  S  A  K  *  G  N  A  T  P  T  Y  P  K  D  D  Q  L  G  S  G  L  S  *  R  V  I  *  S  R  S  G  T  S  S  V  F  C  A  N  T  S  G  F  R  S  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  N  R  H  V  S  T  P  N  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  S  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  T  V  W  C  G  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  R  V  S  T  N  R  G  T  T  Y  D  L  G  L  T   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  V  N  E  Q  V  Q  N  E  E  M  P  P  Q  P  T  P  K  M  I  N  *  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  S  D  Q  H  E  L  F  S  K  F  L  K  V  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  A  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  I  E  A  P  P  M  T  W  A  S  L  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  R  *  L  L  H  R  L  R  K  *  *  E  R  G  R  M  G  *  M  N  K  C  K  M  R  K  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  K  V  R  H  L  Q  C  F  L  R  Q  H  L  R  F  Q  K  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  K  *  A  R  F  H  A  *  L  L  G  L  *  *  Q  V  I  S  M  N  F  S  V  S  S  *  K  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  L  *  *  N  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  I  S  S  V  N  Q  *  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161A14.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83208" stop="83624"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLAYLSGLSDQGQAPPVFSAPTPPVSEVQHAATMAPRMDVPLEIGTFPRLTTGPIMTSDQHELFSKFLKVKPPVFKGAESEDAYDFLVDCHELLHKMAIVERFGVEFVTYQFQGNAKMWWRSHIECQPIEAPPMTWASL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="83699" PGL_stop="85143"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83699" e_stop="83885"/>
            <exon e_start="84630" e_stop="85143"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.909"/>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="83699" e_stop="83885" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="83886" i_stop="84629" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.912">
            <gDNA_exon_boundary e_start="84630" e_stop="85143" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83699" stop="83885"/>
              <exon start="84630" stop="85143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGGATTGCGGATTTCAGCCTTACAGGTAGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTT : GATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATTCTAAAATGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTCCACATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAGAGGTTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTGGTTTGCGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGATCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCAGATGTGCATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  *  C  L  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  S  R  A  D  S  P  V  C  E  G  V  E  V  R  I  A  D  F  S  L  T  G  S  G  N  G  K  I  L  P  R  S  G  R  L   : *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  F  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  P  H  R  L  L  S  S  C  *  E  N  D  *  *  R  L  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  S  G  L  R  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  G  *  G  Y  *  L  L  Y  *  S  *  T  R  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  T  T  S  R  V  I  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  G  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  S  K  M  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  H  I  V  S  F  L  R  A  K  K  M  I  S  R  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  C  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  D  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  Q  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  M  L  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  S  V  S  V  L  K  S  G  F  A  G  L  *  R  G  *  G  Q  D  C  G  F  Q  P  Y  R  *  R  Q  R  Q  N  P  S  K  K  W  *  T  L :   M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  I  L  K  W  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  S  T  S  S  P  F  F  V  L  R  K  *  L  V  E  V  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  Q  W  F  A  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  G  I  L  T  S  V  L  I  L  N  P  V  L  A  P  F  L  Y  P  L  I  E  W  I  P  R  S  *  E  S  *  K  H  N  F  K  S  Y  *  T  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  R  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0161A14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83700" stop="83885"/>
                    <exon start="84630" stop="85142"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSGLRISALQVAATAKSFQEVVDFDVILGMTWLSPQFAILDCNSKMVTLAKPGTDPLVWEGDYTSNPVHIVSFLRAKKMISRGCLAFLAHLKDDTTQVPSIESVSVVCEFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMDPAELRELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFQMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="87196" PGL_stop="87020"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87196" e_stop="87020"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="87196" e_stop="87020" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87196" stop="87020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATAAAATGCTTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  *  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  K  M  L  Q  M  G  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  D  H  Q  T  L  S  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  K  C  F  K  W  G  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  T  T  K  L  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0161A14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 54 chains have been computed
$ 
$ memory statistics:
$ 63104 bytes spliced alignments in total
$ 10 spliced alignments have been stored
$ 6310 bytes was the average size of a spliced alignment
$ 11632 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1938 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 64 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:31:49
-->
