<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:43:53"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333185" ref_strand="+" ref_description="SGN-E333185 [cTOD-20-A15]">
      <seq>aaagaccaaccaacaacaagaaaagtttttgtgaagaggactggtcaagtttgaaaagcaaatacccctcccttcaagaggaggacttgcatcgttattgcttctcttcagcgtatatattggcattacttcatgatagtcttggaattgctttggatgatgataggattggatatgctaatcaagttgaaaacattccacttgattgggcattgggagcattcatcttgcagagcacagctgagttggacaaagagcattctgggtggtttgcaaatatgttcagtgaggactctctcattttgcttctcttctttgcctttttcattttggtgatgttcaccgcatggtatgtgtcaaagtggagaaagccacaattgaagactgtgtatgatctagagaaaggaaagtacatagtcacacgtgttggtagatgttcatagattgttttataggagtagaagccattttcctgcatctgtggataaggcggaaggaccaaagtagatcatcaactacctcatccaagaatctctgcacactttgttgcttggtaccccgagctaaagatgctatacttaggcgaagtcagatcaatcttatgggactgtagctacccaactcaagaaggtgtctcggtctctatttattgttatgaagcagaaaatcttcctgtaaaaatgttatagtcggtatgaggaagcagatatactagaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1" stop="1390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12" g_stop="178" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="179" i_stop="536" i_length="358">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="537" g_stop="1090" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="720" r_length="554" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E333185" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12" e_stop="178"/>
          <exon e_start="537" e_stop="1090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGATCTTATGGCGGCTGGGAAAAGTTTTTGTGAAGAGGACTGGTCAAGTTTGAAAAGCAAATACCCCTCCCTTCAAGAGGAGGACTTGCATCGTTATTGCTTCTCTTCAGCGTATATATTGGCATTACTTCATGATAGTCTTGGAATTGCTTTGGATGATGATAGGTACTTACTAATTTTGATATCCTTCTTTGTATATCCTTTTTAATTCTTCCTGCTGTCTTCTTGACTTAAGAAGAAAGCTCAAACATTCTGCTGCTTGCTTTTCACATAGCTTTCCAAGTTTTAATGATGGGTTCTTGGTTAAGTATCTTATCTACCGTTCCTCCTCCTTCCCGAGGCTCGTCTCTTCTTTTATGAAGTGAATAGTTAAAATCTACTGAAAAACATAGATGATAAGAGAATCTTCATCAAAAAAAAAATATTAATTTATACATATTACTTCCAAAATCTGTTTGAAGAAGCACATATAGTTAATATATATTTTACCATCCCACTTAAATTCAAGTATATGTTTGAGCAGGATTGGATATGCTAATCAAGTTGAAAACATTCCACTTGATTGGGCATTGGGAGCATTCATCTTGCAGAGCACAGCTGAGTTGGACAAAGAGCATTCTGGGTGGTTTGCAAATATGTTCAGTGAGGACTCTCTCATTTTGCTTCTCTTCTTTGCCTTTTTCATTTTGGTGATGTTCACCGCATGGTATGTGTCAAAGTGGAGAAAGCCACAATTGAAGACTGTGTATGATCTAGAGAAAGGAAAGTACATAGTCACACGTGTTGGTAGATGTTCATAGATTGTTTTATAGGAGTAGAAGCCATTTTCCTGCATCTGTGGATAAGGCGGAAGGACCAAAGTAGATCATCAACTACCTCATCCAAGAATCTCTGCACACTTTGTTGCTTGGTACCCCGAGCTAAAGATGCTATACTTAGGCGAAGTCAGATCAATCTTATGGGACTGTAGCTACCCAACTCAAGAAGGTGTCTCGGTCTCTATTTATTGTTATGAAGCAGAAAATCTTCCTGTAAGAATGTTATAGTCGGTATGAGGAAGCAGATATACTAGAAACT</genome_strand>
        <mrna_strand>AAAGACCAACCAACAAC-AAGAAAAGTTTTTGTGAAGAGGACTGGTCAAGTTTGAAAAGCAAATACCCCTCCCTTCAAGAGGAGGACTTGCATCGTTATTGCTTCTCTTCAGCGTATATATTGGCATTACTTCATGATAGTCTTGGAATTGCTTTGGATGATGATAG......................................................................................................................................................................................................................................................................................................................................................................GATTGGATATGCTAATCAAGTTGAAAACATTCCACTTGATTGGGCATTGGGAGCATTCATCTTGCAGAGCACAGCTGAGTTGGACAAAGAGCATTCTGGGTGGTTTGCAAATATGTTCAGTGAGGACTCTCTCATTTTGCTTCTCTTCTTTGCCTTTTTCATTTTGGTGATGTTCACCGCATGGTATGTGTCAAAGTGGAGAAAGCCACAATTGAAGACTGTGTATGATCTAGAGAAAGGAAAGTACATAGTCACACGTGTTGGTAGATGTTCATAGATTGTTTTATAGGAGTAGAAGCCATTTTCCTGCATCTGTGGATAAGGCGGAAGGACCAAAGTAGATCATCAACTACCTCATCCAAGAATCTCTGCACACTTTGTTGCTTGGTACCCCGAGCTAAAGATGCTATACTTAGGCGAAGTCAGATCAATCTTATGGGACTGTAGCTACCCAACTCAAGAAGGTGTCTCGGTCTCTATTTATTGTTATGAAGCAGAAAATCTTCCTGTAAAAATGTTATAGTCGGTATGAGGAAGCAGATATACTAGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333981" ref_strand="+" ref_description="SGN-E333981 [cTOD-24-C21]">
      <seq>aaagaccaaccaacaacaagaaaagtttttgtgaagaggactggtcaagtttgaaaagcaaatacccctcccttcaagaggaggacttgcatcgttattgcttctcttcagcgtatatattggcattacttcatgatagtcttggaattgctttggatgatgataggattggatatgctaatcaagttgaaaacattccacttgattgggcattgggagcattcatcttgcagagcacagctgagttggacaaagagcattctgggtggtttgcaaatatgttcagtgaggactctctcattttgcttctcttctttgcctttttcattttggtgatgttcaccgcatggtatgtgtcaaagtggagaaagccacaattgaagactgtgtatgatctagagaaaggaaagtacatagtcacacgtgttggtagatgttcatagattgttttataggagtagaagccattttcctgcatctgtggataaggcggaaggaccaaagtagatcatcaactacctcatccaagaatctctgcacactttgttgcttggtaccccgagctaaagatgctatacttaggcgaagtcagatcaatcttatgggactgtagctacccaactcaagaaggtgtctcggtctctatttattgttatgaagcagaaaatcttcctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1" stop="1346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12" g_stop="178" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="179" i_stop="536" i_length="358">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="537" g_stop="1046" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="676" r_length="510" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E333981" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12" e_stop="178"/>
          <exon e_start="537" e_stop="1046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGATCTTATGGCGGCTGGGAAAAGTTTTTGTGAAGAGGACTGGTCAAGTTTGAAAAGCAAATACCCCTCCCTTCAAGAGGAGGACTTGCATCGTTATTGCTTCTCTTCAGCGTATATATTGGCATTACTTCATGATAGTCTTGGAATTGCTTTGGATGATGATAGGTACTTACTAATTTTGATATCCTTCTTTGTATATCCTTTTTAATTCTTCCTGCTGTCTTCTTGACTTAAGAAGAAAGCTCAAACATTCTGCTGCTTGCTTTTCACATAGCTTTCCAAGTTTTAATGATGGGTTCTTGGTTAAGTATCTTATCTACCGTTCCTCCTCCTTCCCGAGGCTCGTCTCTTCTTTTATGAAGTGAATAGTTAAAATCTACTGAAAAACATAGATGATAAGAGAATCTTCATCAAAAAAAAAATATTAATTTATACATATTACTTCCAAAATCTGTTTGAAGAAGCACATATAGTTAATATATATTTTACCATCCCACTTAAATTCAAGTATATGTTTGAGCAGGATTGGATATGCTAATCAAGTTGAAAACATTCCACTTGATTGGGCATTGGGAGCATTCATCTTGCAGAGCACAGCTGAGTTGGACAAAGAGCATTCTGGGTGGTTTGCAAATATGTTCAGTGAGGACTCTCTCATTTTGCTTCTCTTCTTTGCCTTTTTCATTTTGGTGATGTTCACCGCATGGTATGTGTCAAAGTGGAGAAAGCCACAATTGAAGACTGTGTATGATCTAGAGAAAGGAAAGTACATAGTCACACGTGTTGGTAGATGTTCATAGATTGTTTTATAGGAGTAGAAGCCATTTTCCTGCATCTGTGGATAAGGCGGAAGGACCAAAGTAGATCATCAACTACCTCATCCAAGAATCTCTGCACACTTTGTTGCTTGGTACCCCGAGCTAAAGATGCTATACTTAGGCGAAGTCAGATCAATCTTATGGGACTGTAGCTACCCAACTCAAGAAGGTGTCTCGGTCTCTATTTATTGTTATGAAGCAGAAAATCTTCCTGT</genome_strand>
        <mrna_strand>AAAGACCAACCAACAAC-AAGAAAAGTTTTTGTGAAGAGGACTGGTCAAGTTTGAAAAGCAAATACCCCTCCCTTCAAGAGGAGGACTTGCATCGTTATTGCTTCTCTTCAGCGTATATATTGGCATTACTTCATGATAGTCTTGGAATTGCTTTGGATGATGATAG......................................................................................................................................................................................................................................................................................................................................................................GATTGGATATGCTAATCAAGTTGAAAACATTCCACTTGATTGGGCATTGGGAGCATTCATCTTGCAGAGCACAGCTGAGTTGGACAAAGAGCATTCTGGGTGGTTTGCAAATATGTTCAGTGAGGACTCTCTCATTTTGCTTCTCTTCTTTGCCTTTTTCATTTTGGTGATGTTCACCGCATGGTATGTGTCAAAGTGGAGAAAGCCACAATTGAAGACTGTGTATGATCTAGAGAAAGGAAAGTACATAGTCACACGTGTTGGTAGATGTTCATAGATTGTTTTATAGGAGTAGAAGCCATTTTCCTGCATCTGTGGATAAGGCGGAAGGACCAAAGTAGATCATCAACTACCTCATCCAAGAATCTCTGCACACTTTGTTGCTTGGTACCCCGAGCTAAAGATGCTATACTTAGGCGAAGTCAGATCAATCTTATGGGACTGTAGCTACCCAACTCAAGAAGGTGTCTCGGTCTCTATTTATTGTTATGAAGCAGAAAATCTTCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688004" ref_strand="+" ref_description="SGN-E688004 [T3_tus_85_B12]">
      <seq>gaaagaccaaccaacaacaagaaaagtttttgtgaagaggactggtcaagtttgaaaagcaaatacccctcccttcaagaggaggacttgcatcgttattgcttctcttcagcgtatatattggcattacttcatgatagtcttggaattgctttggatgatgataggattggatatgctaatcaagttgaaaacattccacttgattgggcattgggagcattcatcttgcagagcacagctgagttggacaaagagcattctgggtggtttgcaaatatgttcagtgaggactctctcattttgcttctcttctttgcctttttcattttggtgatgttcaccgcatggtatgtgtcaaagtggagaaagccacaattgaagactgtgtatgatctagagaaaggaaagtacatagtcacacgtgttggtagatgttcatagattgttttataggagtagaagccattttcctgcatctgtggataaggcggaaggaccaaagtagatcatcaactacctcatccaagaatctctgcacactttgttgcttggtaccccgagctaaagatgctatacttaggcgaagtcagatcaatcttatgggactgtagctacccaactcaagaaggtgtctcggtctctatttattgttatgaagcagaaaatcttcctgtaagaatgttatagtcggtatgaggaagcagatatactagaaacttagaagagctcgtcttgttttggttgctcaccaagtataccatttacactatagtcattactcattaacatatttccttcacaaagtagttgcctgtatccttcccctggaggggggttgggtgtagaactgaagatttctcattgcgtggtaaataatttgaatttattcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1" stop="1559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51" g_stop="178" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="167" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="179" i_stop="536" i_length="358">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="537" g_stop="1259" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="893" r_length="726" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="895" polyA_stop="904"/>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E688004" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51" e_stop="178"/>
          <exon e_start="537" e_stop="1259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGGTCAAGTTTGAAAAGCAAATACCCCTCCCTTCAAGAGGAGGACTTGCATCGTTATTGCTTCTCTTCAGCGTATATATTGGCATTACTTCATGATAGTCTTGGAATTGCTTTGGATGATGATAGGTACTTACTAATTTTGATATCCTTCTTTGTATATCCTTTTTAATTCTTCCTGCTGTCTTCTTGACTTAAGAAGAAAGCTCAAACATTCTGCTGCTTGCTTTTCACATAGCTTTCCAAGTTTTAATGATGGGTTCTTGGTTAAGTATCTTATCTACCGTTCCTCCTCCTTCCCGAGGCTCGTCTCTTCTTTTATGAAGTGAATAGTTAAAATCTACTGAAAAACATAGATGATAAGAGAATCTTCATCAAAAAAAAAATATTAATTTATACATATTACTTCCAAAATCTGTTTGAAGAAGCACATATAGTTAATATATATTTTACCATCCCACTTAAATTCAAGTATATGTTTGAGCAGGATTGGATATGCTAATCAAGTTGAAAACATTCCACTTGATTGGGCATTGGGAGCATTCATCTTGCAGAGCACAGCTGAGTTGGACAAAGAGCATTCTGGGTGGTTTGCAAATATGTTCAGTGAGGACTCTCTCATTTTGCTTCTCTTCTTTGCCTTTTTCATTTTGGTGATGTTCACCGCATGGTATGTGTCAAAGTGGAGAAAGCCACAATTGAAGACTGTGTATGATCTAGAGAAAGGAAAGTACATAGTCACACGTGTTGGTAGATGTTCATAGATTGTTTTATAGGAGTAGAAGCCATTTTCCTGCATCTGTGGATAAGGCGGAAGGACCAAAGTAGATCATCAACTACCTCATCCAAGAATCTCTGCACACTTTGTTGCTTGGTACCCCGAGCTAAAGATGCTATACTTAGGCGAAGTCAGATCAATCTTATGGGACTGTAGCTACCCAACTCAAGAAGGTGTCTCGGTCTCTATTTATTGTTATGAAGCAGAAAATCTTCCTGTAAGAATGTTATAGTCGGTATGAGGAAGCAGATATACTAGAAACTTAGAAGAGCTCGTCTTG-TTTGGTTGCTCACCAAGTATACCATTTACACTATAGTCATTACTCATTAACATATTTCCTTCACAAAGTAGTTGCCTGTATCCATCCCCTGGAGGGGGGTT-GGTGTAGAACTGAAGATTTCTCA-TGGGTGGTAAATAATTTGAATTTATTCT</genome_strand>
        <mrna_strand>GACTGGTCAAGTTTGAAAAGCAAATACCCCTCCCTTCAAGAGGAGGACTTGCATCGTTATTGCTTCTCTTCAGCGTATATATTGGCATTACTTCATGATAGTCTTGGAATTGCTTTGGATGATGATAG......................................................................................................................................................................................................................................................................................................................................................................GATTGGATATGCTAATCAAGTTGAAAACATTCCACTTGATTGGGCATTGGGAGCATTCATCTTGCAGAGCACAGCTGAGTTGGACAAAGAGCATTCTGGGTGGTTTGCAAATATGTTCAGTGAGGACTCTCTCATTTTGCTTCTCTTCTTTGCCTTTTTCATTTTGGTGATGTTCACCGCATGGTATGTGTCAAAGTGGAGAAAGCCACAATTGAAGACTGTGTATGATCTAGAGAAAGGAAAGTACATAGTCACACGTGTTGGTAGATGTTCATAGATTGTTTTATAGGAGTAGAAGCCATTTTCCTGCATCTGTGGATAAGGCGGAAGGACCAAAGTAGATCATCAACTACCTCATCCAAGAATCTCTGCACACTTTGTTGCTTGGTACCCCGAGCTAAAGATGCTATACTTAGGCGAAGTCAGATCAATCTTATGGGACTGTAGCTACCCAACTCAAGAAGGTGTCTCGGTCTCTATTTATTGTTATGAAGCAGAAAATCTTCCTGTAAGAATGTTATAGTCGGTATGAGGAAGCAGATATACTAGAAACTTAGAAGAGCTCGTCTTGTTTTGGTTGCTCACCAAGTATACCATTTACACTATAGTCATTACTCATTAACATATTTCCTTCACAAAGTAGTTGCCTGTATCCTTCCCCTGGAGGGGGGTTGGGTGTAGAACTGAAGATTTCTCATTGCGTGGTAAATAATTTGAATTTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605202" ref_strand="+" ref_description="SGN-E605202 [21117]">
      <seq>aattattaccacccatgagaaatctttagttctacaccaccccctccaggggatacaggcaactactttgtaaaggaaatgtgttaatgagtaatgactatagtgtaaatggtatccttggtgagcaaccaaacaagaccagctcttctaagtttctagtatctgcttcctcataccgactataacattcttaccggaagcttttctgcttcataataataaatagagacgccttcgtatcaacctcacttcaacagtcccataagattgatctgacctcgactaagtataacatctttagctcggggtaccaagcaacaaagtgtgcagagattcttggatgaggtagttgatgatccactttggtcctttcgccttatccacagatgcaggaaaatggcttctactcctataaaacaatctatgaacatctaccaacacgtgtgactatgtactttcctttctctagatcatacacagtcttcaattgtggctttctccactttgacacataccatgcggtgaacatcaccaaaatgaaaaacgcaaagaagagaagcaaaatgagagagtcctcactgaacatatttgcaaaccacccagaatgctctttgtccaactcagctgtgctctgcaatatgaatgctcccaatgcccaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1547" stop="272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1247" g_stop="572" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E605202" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E605202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1247" e_stop="572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTTACCACCCATGAGAAATCTTCAGTTCTACACCAACCCCCCTCCAGGGGATGGATACAGGCAACTACTTTGTGAAGGAAATATGTTAATGAGTAATGACTATAGTGTAAATGGTATACTTGGTGAGCAACCAAACAAGACGAGCTCTTCTAAGTTTCTAGTATATCTGCTTCCTCATACCGACTATAACATTCTTACAGGAAGATTTTCTGCTTCATAACAATAAATAGAGACCGAGACACCTTCTTGAGTTGGGTAGCTACAGTCCCATAAGATTGATCTGACTTCGCCTAAGTATAGCATCTTTAGCTCGGGGTACCAAGCAACAAAGTGTGCAGAGATTCTTGGATGAGGTAGTTGATGATCTACTTTGGTCCTTCCGCCTTATCCACAGATGCAGGAAAATGGCTTCTACTCCTATAAAACAATCTATGAACATCTACCAACACGTGTGACTATGTACTTTCCTTTCTCTAGATCATACACAGTCTTCAATTGTGGCTTTCTCCACTTTGACACATACCATGCGGTGAACATCACCAAAATGAAAAAGGCAAAGAAGAGAAGCAAAATGAGAGAGTCCTCACTGAACATATTTGCAAACCACCCAGAATGCTCTTTGTCCAACTCAGCTGTGCTCTGCAAGATGAATGCTCCCAATGCCCAATCAA</genome_strand>
        <mrna_strand>AATTA-TTACCACCCATGAGAAATCTTTAGTTCTACACC-A-CCCCCTCCAG--G--GGATACAGGCAACTACTTTGTAAAGGAAATGTGTTAATGAGTAATGACTATAGTGTAAATGGTATCCTTGGTGAGCAACCAAACAAGACCAGCTCTTCTAAGTTTCTAG--TATCTGCTTCCTCATACCGACTATAACATTCTTACCGGAAGCTTTTCTGCTTCATAATAATAAATAGAGA-C--GCCTTCGTATCAACCTCACT-TCAACAGTCCCATAAGATTGATCTGACCTCGACTAAGTATAACATCTTTAGCTCGGGGTACCAAGCAACAAAGTGTGCAGAGATTCTTGGATGAGGTAGTTGATGATCCACTTTGGTCCTTTCGCCTTATCCACAGATGCAGGAAAATGGCTTCTACTCCTATAAAACAATCTATGAACATCTACCAACACGTGTGACTATGTACTTTCCTTTCTCTAGATCATACACAGTCTTCAATTGTGGCTTTCTCCACTTTGACACATACCATGCGGTGAACATCACCAAAATGAAAAACGCAAAGAAGAGAAGCAAAATGAGAGAGTCCTCACTGAACATATTTGCAAACCACCCAGAATGCTCTTTGTCCAACTCAGCTGTGCTCTGCAATATGAATGCTCCCAATGCCCAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325406" ref_strand="+" ref_description="SGN-E325406 [cTOC-1-E16]">
      <seq>ttttttttttttttaacaaggaagaaagcttagaccaaaaaagtgtagaaaacaacaaacaaaccgcaatagtttggtatttttttcggaaaaatctaagataaatactataatttagcaaacacccttcaatttgttccgctataaatccgcagaaatttttgggtttttttctttctctttccatttgctgaatttcttcattttcccaggaattgtgttactttttttatctgggtttttacaatgggagattgtttggtggtgcatacggatcgtattgtgaaggctaatggagctgagattatggatgggaagaatcctgaaatggtagggtcttcgtcggcaatagctgtagatgagaagaaggtgctggaggaggaggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1906" stop="3182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2206" g_stop="2417" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2418" i_stop="2706" i_length="289">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2707" g_stop="2882" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="388" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E325406" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2206" e_stop="2417"/>
          <exon e_start="2707" e_stop="2882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTTTTTAACAAGGAAGAAAGCTTAGACCAAAAAAGTGTAGAAAACAACAAACAAACCGCAATAGTTTGGTATTTTTTTCGGAAAAATCTAAGATAAATACTATAATTTAGCAAACACCCTTCAATTTGTTCCGCTATAAATCCGCAGAAATTTTTGGGTTTTTTTCTTTCTCTTTCCATTTGCTGAATTTCTTCATTTTCCCAGGTATGGTTCCTTTTTTTGCTCTTTTATGTCTTAATTTGTAGTTTGATTTGTATTTAGGCTTGAATTTTGAGAAATATCTTAATTTTGCTGAGATTTTTTGGTTCATAGGTCACTTTTATGTTTAGGGTTTGTTTTTTCGTGATTTTTTTTTTAAAAAAAATTGGAAAGTAATGAACTTAGATTAGTTTGAATTGAGAAGAAGTAGTTGATGTTGAGGAATTGGAAAGGAAAGATCTTAACTTTCGTTGTTTATTGAATTGGGAAGTGATTATTGGTAAATTTGGTGTAGGAATTGTGTTACTTTTTTTATCTGGGTTTTTACAATGGGAGATTGTTTGGTGGTGCATACGGATCGTATTGTGAAGGCTAATGGAGCTGAGATTATGGATGGGAAGAATCCTGAAATGGTAGGGTCTTCGTCGGCAATAGCTGTAGATGAGAAGAAGGTGCTGGAGGAGGAGGAGG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTAACAAGGAAGAAAGCTTAGACCAAAAAAGTGTAGAAAACAACAAACAAACCGCAATAGTTTGGTATTTTTTTCGGAAAAATCTAAGATAAATACTATAATTTAGCAAACACCCTTCAATTTGTTCCGCTATAAATCCGCAGAAATTTTTGGGTTTTTTTCTTTCTCTTTCCATTTGCTGAATTTCTTCATTTTCCCAG.................................................................................................................................................................................................................................................................................................GAATTGTGTTACTTTTTTTATCTGGGTTTTTACAATGGGAGATTGTTTGGTGGTGCATACGGATCGTATTGTGAAGGCTAATGGAGCTGAGATTATGGATGGGAAGAATCCTGAAATGGTAGGGTCTTCGTCGGCAATAGCTGTAGATGAGAAGAAGGTGCTGGAGGAGGAGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277745" ref_strand="-" ref_description="SGN-E277745 [cLEL-5-O16](-)">
      <seq>gcacgagcttagaccaaaaaagtgtagaaaacaacaaacaaaccgcaatagtttggtatttttttcggaaaaatctaagataaatactataatttagcaaacacccttcaatttgttccgctataaatccgcagaaatttttgggtttttttctttctctttccatttgctgaatttcttcattttcccaggaattgtgttactttttttatctgggtttttacaatgggagattgtttgggtggtgcatacggatcgtattgtgaaggctaatggagctgagattatggatgggaagaatcctgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1932" stop="3123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2226" g_stop="2417" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2418" i_stop="2706" i_length="289">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2707" g_stop="2823" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="309" r_length="118" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E277745" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277745" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2226" e_stop="2417"/>
          <exon e_start="2707" e_stop="2823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAAGCTTAGACCAAAAAAGTGTAGAAAACAACAAACAAACCGCAATAGTTTGGTATTTTTTTCGGAAAAATCTAAGATAAATACTATAATTTAGCAAACACCCTTCAATTTGTTCCGCTATAAATCCGCAGAAATTTTTGGGTTTTTTTCTTTCTCTTTCCATTTGCTGAATTTCTTCATTTTCCCAGGTATGGTTCCTTTTTTTGCTCTTTTATGTCTTAATTTGTAGTTTGATTTGTATTTAGGCTTGAATTTTGAGAAATATCTTAATTTTGCTGAGATTTTTTGGTTCATAGGTCACTTTTATGTTTAGGGTTTGTTTTTTCGTGATTTTTTTTTTAAAAAAAATTGGAAAGTAATGAACTTAGATTAGTTTGAATTGAGAAGAAGTAGTTGATGTTGAGGAATTGGAAAGGAAAGATCTTAACTTTCGTTGTTTATTGAATTGGGAAGTGATTATTGGTAAATTTGGTGTAGGAATTGTGTTACTTTTTTTATCTGGGTTTTTACAATGGGAGATTGTTT-GGTGGTGCATACGGATCGTATTGTGAAGGCTAATGGAGCTGAGATTATGGATGGGAAGAATCCTGAAAT</genome_strand>
        <mrna_strand>GCACGA-GCTTAGACCAAAAAAGTGTAGAAAACAACAAACAAACCGCAATAGTTTGGTATTTTTTTCGGAAAAATCTAAGATAAATACTATAATTTAGCAAACACCCTTCAATTTGTTCCGCTATAAATCCGCAGAAATTTTTGGGTTTTTTTCTTTCTCTTTCCATTTGCTGAATTTCTTCATTTTCCCAG.................................................................................................................................................................................................................................................................................................GAATTGTGTTACTTTTTTTATCTGGGTTTTTACAATGGGAGATTGTTTGGGTGGTGCATACGGATCGTATTGTGAAGGCTAATGGAGCTGAGATTATGGATGGGAAGAATCCTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729984" ref_strand="+" ref_description="SGN-E729984 [LA22CG08]">
      <seq>acaaaccgcaatagtttggtatttttttcggaaaaatctaagataaatactataatttagcaaacacccttcaatttgttccgctataaatccgcagaaatttttgggtttttttctttctctttccatttgctgaatttcttcattttcccaggaattgtgttactttttttatctgggtttttacaatgggagattgtttggtggtgcatacggatcgtattgtgaaggctaatggagctgagattatggatgggaagaatcctgaaatggtagggtcttcgtcggcaatagctgtagatgagaagaaggtgctggaggaggaggaggaggaggagggtgatgaggaggtgccgttaattggtagagcagagtgcaggatttgccaggaggaggattctttggacaagttggagagcccatgtgcttgcagtggaagtctcaagtacacacaccgagcatgcgttcaacactggtgcaatgagaagggggatattacttgtgagatttgccatcagcaataccagcctggttacactgttcctcctcgacctgtggctgaggagacaattattgatattgggggaggatggcaaatctctggtacccctttgaatttacatgatcctcgcgtcttggcaattgcagaggctgaacgccaacttctggaagctgaatatgatgattacaattctgcaaatgcaagtggtgcagctttctttcgatcggctgctttaattttgatggctcttctactattgcgccatgcattaccaatgacagatacagatggagatgatgaagatccaactgctttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1964" stop="6071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2264" g_stop="2417" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2418" i_stop="2706" i_length="289">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2707" g_stop="2998" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="446" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2999" i_stop="3893" i_length="895">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3894" g_stop="3965" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="518" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3966" i_stop="4588" i_length="623">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4589" g_stop="4653" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="583" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4654" i_stop="5130" i_length="477">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5131" g_stop="5287" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="740" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5288" i_stop="5689" i_length="402">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5690" g_stop="5771" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="822" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E729984" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2264" e_stop="2417"/>
          <exon e_start="2707" e_stop="2998"/>
          <exon e_start="3894" e_stop="3965"/>
          <exon e_start="4589" e_stop="4653"/>
          <exon e_start="5131" e_stop="5287"/>
          <exon e_start="5690" e_stop="5771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACCGCAATAGTTTGGTATTTTTTTCGGAAAAATCTAAGATAAATACTATAATTTAGCAAACACCCTTCAATTTGTTCCGCTATAAATCCGCAGAAATTTTTGGGTTTTTTTCTTTCTCTTTCCATTTGCTGAATTTCTTCATTTTCCCAGGTATGGTTCCTTTTTTTGCTCTTTTATGTCTTAATTTGTAGTTTGATTTGTATTTAGGCTTGAATTTTGAGAAATATCTTAATTTTGCTGAGATTTTTTGGTTCATAGGTCACTTTTATGTTTAGGGTTTGTTTTTTCGTGATTTTTTTTTTAAAAAAAATTGGAAAGTAATGAACTTAGATTAGTTTGAATTGAGAAGAAGTAGTTGATGTTGAGGAATTGGAAAGGAAAGATCTTAACTTTCGTTGTTTATTGAATTGGGAAGTGATTATTGGTAAATTTGGTGTAGGAATTGTGTTACTTTTTTTATCTGGGTTTTTACAATGGGAGATTGTTTGGTGGTGCATACGGATCGTATTGTGAAGGCTAATGGAGCTGAGATTATGGATGGGAAGAATCCTGAAATGGTAGGGTCTTCGTCGGCAATAGCTGTAGATGAGAAGAAGGTGCTGGAGGAGGAGGAGGAGGAGGAGGGTGATGAGGAGGTGCCGTTAATTGGTAGAGCAGAGTGCAGGATTTGCCAGGAGGAGGATTCTTTGGACAAGTTGGAGAGCCCATGTGCTTGCAGTGGAAGTCTCAAGGTGAAATCTTTTTCTCGTTTGGTTTTACTTGCAGGAGAATCTGATCTTTTTATGGTTATATGAAAATTGTTTACAGGACAAAAGGAAATGTGGGGTTAGATTTTCTTCTATTCTTTGTTTTCTTCATATGTGCCTTGAAATTGGAAGCACTTGTGCTTGCATTTGAGCTCAGTTCGATCACCTCCTAATACTGTTTAAATTAGTGATACTCGTTATGTGTATCCCAACTAGTTTGGCGCAAGTAGATATCACCAATATTGATTTGGTGATATCTTGGATGCCATGGTAAGAGGGGGGCGCTATGATGTGTGTGTGTCTGTAGCTTTGCATGAGGATGGTGCGCGTTTTTCTGTTCTTTTCTCTTTTTTCACTCTTTTGGTACCTCAGTATCATGTACTTCTTTTCAAGACTGTTGTTGGGGACCCCCTTTTCAAGCAAGCTTAACTTCACTTGAGTTGTGGTTATCCACCATGATGAGCCAAGACATGACCCTTACTCCTGTTAACAGGATATATCCTGCTATCTGATATAGTCATATCACATTCTACTTTCACTTCAGGAACTCTTTGCTTCCATAGCAGCACTTATTGAGCTATAGCTGTAATATCCTTGCCATTCCTGTCCTCCTGTTGCAGTTGCTTTCTTTTTATACATCTTTCACCCTCATCAAAGGTTTTCCTGCTTACAATCCAATTTTTTCTACTTATTCTCATTTTAGTTGCATAGATGGCAGCACTTTCCTTCTTTGCATTGTTTCCATTTTACTATACAGTAAGTTATGTGATTTTCTTTAATTGCCTGATAACTTAAGAATTGTTGTTTTCTGTCTCGCTTGCTTTGTTTTCTTTCAATTTGTGTGTCTGCTAATTATTTTGGTGGAAAACATTTACTGCAGTACACACACCGAGCATGCGTTCAACACTGGTGCAATGAGAAGGGGGATATTACTTGTGAGATTTGCCATCAGGTATGTGTCAATCTTCCAGTTGGTTTCCAACTTCCCATATTGTCTTGTATATTATAAGATGAAAGACACTGCATTCTATGCGAGAGTACTCCTGCTTGTGCCATTGAGTTCAAACCACAGGGTTCTCTTCCCTCTTGAATAGGAGTGGGGTTTTTAACCTGTCGGCACCCCAAGGGTAGTGGCTGTGGGTTTCCCTTGTCATTTAAAAAAAGGATCTTCTTGCCATGAGATCCTTTGTATTCATTCCTCTCGATTCATGATGGTTATGCAAGTTGACTATTTAAGTTTAAAACTGAACTATCCTTACTTTAAAATCAATATATATTGGCCCTATATTTGCTTAATTTTGTATCATCAAGCTTAGTTTGTTTTTTCAAGACAATGAAGTTTGGACATGTATTCGTCTCTTGGAGCTTCACCTATAGTTGTCCCTCTCTCTTGCTTATCCCTATTCCATAGTGATTTGACAATCAATATTTCTGGAATTATAAATAGCTTGACTCGTGATGATTCCGGAGGAACTCGAGATGCTGGGCTTGATACATTTGAAATTCTTCCCTTTGTCTTGATGCTCATTAGATGAATTCTTTCTGATATGTTTCATTTTCAATTGCAATGTGCAGCAATACCAGCCTGGTTACACTGTTCCTCCTCGACCTGTGGCTGAGGAGACAATTATTGATATTGGGTGAGGTTAAGTTGGTTCATCTTTAAGGTTTCAAAAAAAAAGTTGGTTCATCTTTCATTTGTTTATGTACCACTAATGTGGTGGTAAATTCTCTTTTTTTCTGTAACCTTTTCAATTCAAACAAGCCATGATTAATGTTTTGACCTCTTTGGTTGTGCTTTTAACTAGTCGGTGTGGAATTAGTCACGAGGTTTGACTATTTTACATTCTGTTTAAGGCGGTGGTGCCCAGGTCAGCTTGCGTGCATCTTGACTAATTCCACTAAGTACCTGCCACCTCCCACCTCCTAGGGATAATTTTGTCCACCAAGGCTTGAGTAGATAAAAGAAACCGCCTAGTGTTCTTTTGTTTTCTCTGCTGATATTTGAACTATAGAGACCATGGTTCTCCCTTACTTCACTGACCACTAGGCCTCAAGGGTGCAAACTCGCTTTTATAGTTTTTAAACTAATTTTAAGCCTTCATATTTTGGTGCAGGGGAGGATGGCAAATCTCTGGTACCCCTTTGAATTTACATGATCCTCGCGTCTTGGCAATTGCAGAGGCTGAACGCCAACTTCTGGAAGCTGAATATGATGATTACAATTCTGCAAATGCAAGTGGTGCAGCTTTCTTTCGATCGGCTGCTTTAATTGTAAGCCCTTATACTACTTATTTCCCAAGATAACATTGTGAGCCTATTTACCAAGCAGTGGGTAAATACTTCTTCGTTGAATTTCAGTTAAAAGAATACACTAATCCAATTCAGGGTTTTGTTTGTCTAACTAAAATTTTAGGCAAGAAGTGATTACAATCTACAAATGTTTCTTTTCCCACTGTGCTTAAAGGTTTTTTTAATTTCCAAAGTTTAACTTTTCACATTTTAATTGGTTTCGAAAAAGAAATGCCAAGAGATACCAATCAAAATGCAAAGTGTAGTCGCTTGTTCAAGCTTTATATAAAGATTGGCCTCTCAGTTGCTGCTGATCTATCTCGACTTGTCTCTCCTTTATGGATTATTGGATGTCCAGTGTTAAATGATAATTTTCATTGACAGTTGATGGCTCTTCTACTATTGCGCCATGCATTACCAATGACAGATACAGATGGAGATGATGAAGATCCAACTGCTTTCTTTT</genome_strand>
        <mrna_strand>ACAAACCGCAATAGTTTGGTATTTTTTTCGGAAAAATCTAAGATAAATACTATAATTTAGCAAACACCCTTCAATTTGTTCCGCTATAAATCCGCAGAAATTTTTGGGTTTTTTTCTTTCTCTTTCCATTTGCTGAATTTCTTCATTTTCCCAG.................................................................................................................................................................................................................................................................................................GAATTGTGTTACTTTTTTTATCTGGGTTTTTACAATGGGAGATTGTTTGGTGGTGCATACGGATCGTATTGTGAAGGCTAATGGAGCTGAGATTATGGATGGGAAGAATCCTGAAATGGTAGGGTCTTCGTCGGCAATAGCTGTAGATGAGAAGAAGGTGCTGGAGGAGGAGGAGGAGGAGGAGGGTGATGAGGAGGTGCCGTTAATTGGTAGAGCAGAGTGCAGGATTTGCCAGGAGGAGGATTCTTTGGACAAGTTGGAGAGCCCATGTGCTTGCAGTGGAAGTCTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACACACCGAGCATGCGTTCAACACTGGTGCAATGAGAAGGGGGATATTACTTGTGAGATTTGCCATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACCAGCCTGGTTACACTGTTCCTCCTCGACCTGTGGCTGAGGAGACAATTATTGATATTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGATGGCAAATCTCTGGTACCCCTTTGAATTTACATGATCCTCGCGTCTTGGCAATTGCAGAGGCTGAACGCCAACTTCTGGAAGCTGAATATGATGATTACAATTCTGCAAATGCAAGTGGTGCAGCTTTCTTTCGATCGGCTGCTTTAATT..................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGCTCTTCTACTATTGCGCCATGCATTACCAATGACAGATACAGATGGAGATGATGAAGATCCAACTGCTTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729845" ref_strand="+" ref_description="SGN-E729845 [LA22BB09]">
      <seq>acaaaccgcaatagtttggtatttttttcggaaaaatctaagataaatactataatttagcaaacacccttcaatttgttccgctataaatccgcagaaatttttgggtttttttctttctctttccatttgctgaatttcttcattttcccaggaattgtgttactttttttatctgggtttttacaatgggagattgtttggtggtgcatacggatcgtattgtgaaggctaatggagctgagattatggatgggaagaatcctgaaatggtagggtcttcgtcggcaatagctgtagatgagaagaaggtgctggaggaggaggaggaggaggagggtgatgaggaggtgccgttaattggtagagcagagtgcaggatttgccaggaggaggattctttggacaagttggagagcccatgtgcttgcagtggaagtctcaagtacacacaccgagcatgcgttcaacactggtgcaatgagaagggggatattacttgtgagatttgccatcagcaataccagcctggttacactgttcctcctcgacctgtggctgaggagacaattattgatattgggggaggatggcaaagctctggtacccctttgaatttacatgatcctcgcgtcttggcaattgcagaggctgaacgccaacttctggaagctgaatatgatgattacaattctgcaaatgcaagtggtgcagctttctttcgatcggctgctttaattttgatggctcttctactattgcgccatgcattaccaatgacagatacagatggagatgatgaagatccaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1964" stop="6063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2264" g_stop="2417" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2418" i_stop="2706" i_length="289">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2707" g_stop="2998" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="446" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2999" i_stop="3893" i_length="895">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3894" g_stop="3965" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="518" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3966" i_stop="4588" i_length="623">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4589" g_stop="4653" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="583" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4654" i_stop="5130" i_length="477">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5131" g_stop="5287" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="740" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5288" i_stop="5689" i_length="402">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5690" g_stop="5763" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="814" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E729845" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2264" e_stop="2417"/>
          <exon e_start="2707" e_stop="2998"/>
          <exon e_start="3894" e_stop="3965"/>
          <exon e_start="4589" e_stop="4653"/>
          <exon e_start="5131" e_stop="5287"/>
          <exon e_start="5690" e_stop="5763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACCGCAATAGTTTGGTATTTTTTTCGGAAAAATCTAAGATAAATACTATAATTTAGCAAACACCCTTCAATTTGTTCCGCTATAAATCCGCAGAAATTTTTGGGTTTTTTTCTTTCTCTTTCCATTTGCTGAATTTCTTCATTTTCCCAGGTATGGTTCCTTTTTTTGCTCTTTTATGTCTTAATTTGTAGTTTGATTTGTATTTAGGCTTGAATTTTGAGAAATATCTTAATTTTGCTGAGATTTTTTGGTTCATAGGTCACTTTTATGTTTAGGGTTTGTTTTTTCGTGATTTTTTTTTTAAAAAAAATTGGAAAGTAATGAACTTAGATTAGTTTGAATTGAGAAGAAGTAGTTGATGTTGAGGAATTGGAAAGGAAAGATCTTAACTTTCGTTGTTTATTGAATTGGGAAGTGATTATTGGTAAATTTGGTGTAGGAATTGTGTTACTTTTTTTATCTGGGTTTTTACAATGGGAGATTGTTTGGTGGTGCATACGGATCGTATTGTGAAGGCTAATGGAGCTGAGATTATGGATGGGAAGAATCCTGAAATGGTAGGGTCTTCGTCGGCAATAGCTGTAGATGAGAAGAAGGTGCTGGAGGAGGAGGAGGAGGAGGAGGGTGATGAGGAGGTGCCGTTAATTGGTAGAGCAGAGTGCAGGATTTGCCAGGAGGAGGATTCTTTGGACAAGTTGGAGAGCCCATGTGCTTGCAGTGGAAGTCTCAAGGTGAAATCTTTTTCTCGTTTGGTTTTACTTGCAGGAGAATCTGATCTTTTTATGGTTATATGAAAATTGTTTACAGGACAAAAGGAAATGTGGGGTTAGATTTTCTTCTATTCTTTGTTTTCTTCATATGTGCCTTGAAATTGGAAGCACTTGTGCTTGCATTTGAGCTCAGTTCGATCACCTCCTAATACTGTTTAAATTAGTGATACTCGTTATGTGTATCCCAACTAGTTTGGCGCAAGTAGATATCACCAATATTGATTTGGTGATATCTTGGATGCCATGGTAAGAGGGGGGCGCTATGATGTGTGTGTGTCTGTAGCTTTGCATGAGGATGGTGCGCGTTTTTCTGTTCTTTTCTCTTTTTTCACTCTTTTGGTACCTCAGTATCATGTACTTCTTTTCAAGACTGTTGTTGGGGACCCCCTTTTCAAGCAAGCTTAACTTCACTTGAGTTGTGGTTATCCACCATGATGAGCCAAGACATGACCCTTACTCCTGTTAACAGGATATATCCTGCTATCTGATATAGTCATATCACATTCTACTTTCACTTCAGGAACTCTTTGCTTCCATAGCAGCACTTATTGAGCTATAGCTGTAATATCCTTGCCATTCCTGTCCTCCTGTTGCAGTTGCTTTCTTTTTATACATCTTTCACCCTCATCAAAGGTTTTCCTGCTTACAATCCAATTTTTTCTACTTATTCTCATTTTAGTTGCATAGATGGCAGCACTTTCCTTCTTTGCATTGTTTCCATTTTACTATACAGTAAGTTATGTGATTTTCTTTAATTGCCTGATAACTTAAGAATTGTTGTTTTCTGTCTCGCTTGCTTTGTTTTCTTTCAATTTGTGTGTCTGCTAATTATTTTGGTGGAAAACATTTACTGCAGTACACACACCGAGCATGCGTTCAACACTGGTGCAATGAGAAGGGGGATATTACTTGTGAGATTTGCCATCAGGTATGTGTCAATCTTCCAGTTGGTTTCCAACTTCCCATATTGTCTTGTATATTATAAGATGAAAGACACTGCATTCTATGCGAGAGTACTCCTGCTTGTGCCATTGAGTTCAAACCACAGGGTTCTCTTCCCTCTTGAATAGGAGTGGGGTTTTTAACCTGTCGGCACCCCAAGGGTAGTGGCTGTGGGTTTCCCTTGTCATTTAAAAAAAGGATCTTCTTGCCATGAGATCCTTTGTATTCATTCCTCTCGATTCATGATGGTTATGCAAGTTGACTATTTAAGTTTAAAACTGAACTATCCTTACTTTAAAATCAATATATATTGGCCCTATATTTGCTTAATTTTGTATCATCAAGCTTAGTTTGTTTTTTCAAGACAATGAAGTTTGGACATGTATTCGTCTCTTGGAGCTTCACCTATAGTTGTCCCTCTCTCTTGCTTATCCCTATTCCATAGTGATTTGACAATCAATATTTCTGGAATTATAAATAGCTTGACTCGTGATGATTCCGGAGGAACTCGAGATGCTGGGCTTGATACATTTGAAATTCTTCCCTTTGTCTTGATGCTCATTAGATGAATTCTTTCTGATATGTTTCATTTTCAATTGCAATGTGCAGCAATACCAGCCTGGTTACACTGTTCCTCCTCGACCTGTGGCTGAGGAGACAATTATTGATATTGGGTGAGGTTAAGTTGGTTCATCTTTAAGGTTTCAAAAAAAAAGTTGGTTCATCTTTCATTTGTTTATGTACCACTAATGTGGTGGTAAATTCTCTTTTTTTCTGTAACCTTTTCAATTCAAACAAGCCATGATTAATGTTTTGACCTCTTTGGTTGTGCTTTTAACTAGTCGGTGTGGAATTAGTCACGAGGTTTGACTATTTTACATTCTGTTTAAGGCGGTGGTGCCCAGGTCAGCTTGCGTGCATCTTGACTAATTCCACTAAGTACCTGCCACCTCCCACCTCCTAGGGATAATTTTGTCCACCAAGGCTTGAGTAGATAAAAGAAACCGCCTAGTGTTCTTTTGTTTTCTCTGCTGATATTTGAACTATAGAGACCATGGTTCTCCCTTACTTCACTGACCACTAGGCCTCAAGGGTGCAAACTCGCTTTTATAGTTTTTAAACTAATTTTAAGCCTTCATATTTTGGTGCAGGGGAGGATGGCAAATCTCTGGTACCCCTTTGAATTTACATGATCCTCGCGTCTTGGCAATTGCAGAGGCTGAACGCCAACTTCTGGAAGCTGAATATGATGATTACAATTCTGCAAATGCAAGTGGTGCAGCTTTCTTTCGATCGGCTGCTTTAATTGTAAGCCCTTATACTACTTATTTCCCAAGATAACATTGTGAGCCTATTTACCAAGCAGTGGGTAAATACTTCTTCGTTGAATTTCAGTTAAAAGAATACACTAATCCAATTCAGGGTTTTGTTTGTCTAACTAAAATTTTAGGCAAGAAGTGATTACAATCTACAAATGTTTCTTTTCCCACTGTGCTTAAAGGTTTTTTTAATTTCCAAAGTTTAACTTTTCACATTTTAATTGGTTTCGAAAAAGAAATGCCAAGAGATACCAATCAAAATGCAAAGTGTAGTCGCTTGTTCAAGCTTTATATAAAGATTGGCCTCTCAGTTGCTGCTGATCTATCTCGACTTGTCTCTCCTTTATGGATTATTGGATGTCCAGTGTTAAATGATAATTTTCATTGACAGTTGATGGCTCTTCTACTATTGCGCCATGCATTACCAATGACAGATACAGATGGAGATGATGAAGATCCAACTGC</genome_strand>
        <mrna_strand>ACAAACCGCAATAGTTTGGTATTTTTTTCGGAAAAATCTAAGATAAATACTATAATTTAGCAAACACCCTTCAATTTGTTCCGCTATAAATCCGCAGAAATTTTTGGGTTTTTTTCTTTCTCTTTCCATTTGCTGAATTTCTTCATTTTCCCAG.................................................................................................................................................................................................................................................................................................GAATTGTGTTACTTTTTTTATCTGGGTTTTTACAATGGGAGATTGTTTGGTGGTGCATACGGATCGTATTGTGAAGGCTAATGGAGCTGAGATTATGGATGGGAAGAATCCTGAAATGGTAGGGTCTTCGTCGGCAATAGCTGTAGATGAGAAGAAGGTGCTGGAGGAGGAGGAGGAGGAGGAGGGTGATGAGGAGGTGCCGTTAATTGGTAGAGCAGAGTGCAGGATTTGCCAGGAGGAGGATTCTTTGGACAAGTTGGAGAGCCCATGTGCTTGCAGTGGAAGTCTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACACACCGAGCATGCGTTCAACACTGGTGCAATGAGAAGGGGGATATTACTTGTGAGATTTGCCATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACCAGCCTGGTTACACTGTTCCTCCTCGACCTGTGGCTGAGGAGACAATTATTGATATTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGATGGCAAAGCTCTGGTACCCCTTTGAATTTACATGATCCTCGCGTCTTGGCAATTGCAGAGGCTGAACGCCAACTTCTGGAAGCTGAATATGATGATTACAATTCTGCAAATGCAAGTGGTGCAGCTTTCTTTCGATCGGCTGCTTTAATT..................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGCTCTTCTACTATTGCGCCATGCATTACCAATGACAGATACAGATGGAGATGATGAAGATCCAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338931" ref_strand="+" ref_description="SGN-E338931 [cTOE-21-F24]">
      <seq>aatagtttggtatttttttcggaaaaatctaagataaatactataatttagcaaacacccttcaatttgttccgctataaatccgcagaaatttttgggtttttttctttctctttccatttgctgaatttcttcattttcccaggaattgtgttactttttttatctgggtttttacaatgggagattgtttggtggtgcatacggatcgtattgtgaaggctaatggagctgagattattgatgggaagaatcctgaaatggttgggtcttcgtcggcaatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1973" stop="3147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2273" g_stop="2417" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2418" i_stop="2706" i_length="289">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2707" g_stop="2847" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="286" r_length="141" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E338931" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2273" e_stop="2417"/>
          <exon e_start="2707" e_stop="2847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGTTTGGTATTTTTTTCGGAAAAATCTAAGATAAATACTATAATTTAGCAAACACCCTTCAATTTGTTCCGCTATAAATCCGCAGAAATTTTTGGGTTTTTTTCTTTCTCTTTCCATTTGCTGAATTTCTTCATTTTCCCAGGTATGGTTCCTTTTTTTGCTCTTTTATGTCTTAATTTGTAGTTTGATTTGTATTTAGGCTTGAATTTTGAGAAATATCTTAATTTTGCTGAGATTTTTTGGTTCATAGGTCACTTTTATGTTTAGGGTTTGTTTTTTCGTGATTTTTTTTTTAAAAAAAATTGGAAAGTAATGAACTTAGATTAGTTTGAATTGAGAAGAAGTAGTTGATGTTGAGGAATTGGAAAGGAAAGATCTTAACTTTCGTTGTTTATTGAATTGGGAAGTGATTATTGGTAAATTTGGTGTAGGAATTGTGTTACTTTTTTTATCTGGGTTTTTACAATGGGAGATTGTTTGGTGGTGCATACGGATCGTATTGTGAAGGCTAATGGAGCTGAGATTATGGATGGGAAGAATCCTGAAATGGTAGGGTCTTCGTCGGCAATAGC</genome_strand>
        <mrna_strand>AATAGTTTGGTATTTTTTTCGGAAAAATCTAAGATAAATACTATAATTTAGCAAACACCCTTCAATTTGTTCCGCTATAAATCCGCAGAAATTTTTGGGTTTTTTTCTTTCTCTTTCCATTTGCTGAATTTCTTCATTTTCCCAG.................................................................................................................................................................................................................................................................................................GAATTGTGTTACTTTTTTTATCTGGGTTTTTACAATGGGAGATTGTTTGGTGGTGCATACGGATCGTATTGTGAAGGCTAATGGAGCTGAGATTATTGATGGGAAGAATCCTGAAATGGTTGGGTCTTCGTCGGCAATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420409" ref_strand="+" ref_description="SGN-E420409 [STM-31-M17]">
      <seq>ccaaaaaagtgcagaaaacaacaaacaaaccgcgataattcagtggttccttagttctattttggtatatttttcggacaaatctaagataaatactataattagcaaacaccgttcaatttgttccgctacaaatccgcagaattttttgggttttttctctttccatttcctgaatttcttcattttcccaggaattgtgttgtttttttatctgggtttttagaatgggagattgtttggtagtgcatacggatcgtcttgtgaaggctaatggagctgagattatggatgggaagaatcctgaaatggtggggtcttcgtcggcaatagctgtagatgagaagaaggtgctggaggaggaggaggaggaggaggagggtgatgaggaggtgccgttaattggtagagcagagtgcaggatttgccaggaggaggattctttggacaagttggagagcccatgtgcttgcagtggaagcctcaagtacacacaccgaacatgcgttcaacactggtgcaatgagaagggggatattacttgtgagatttgccatcagcaataccagcctggttacactgttcctcctcgacctgtggctgatgagacaattattgatattggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="1940" stop="4956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2278" g_stop="2417" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="194" r_length="134" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2418" i_stop="2706" i_length="289">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2707" g_stop="2998" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="488" r_length="294" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2999" i_stop="3893" i_length="895">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3894" g_stop="3965" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="560" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3966" i_stop="4588" i_length="623">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4589" g_stop="4653" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="625" r_length="65" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E420409" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2278" e_stop="2417"/>
          <exon e_start="2707" e_stop="2998"/>
          <exon e_start="3894" e_stop="3965"/>
          <exon e_start="4589" e_stop="4653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTATTTTTTTCGGAAAAATCTAAGATAAATACTATAATTTAGCAAACACCCTTCAATTTGTTCCGCTATAAATCCGCAGAAATTTTTGGGTTTTTTTCTTTCTCTTTCCATTTGCTGAATTTCTTCATTTTCCCAGGTATGGTTCCTTTTTTTGCTCTTTTATGTCTTAATTTGTAGTTTGATTTGTATTTAGGCTTGAATTTTGAGAAATATCTTAATTTTGCTGAGATTTTTTGGTTCATAGGTCACTTTTATGTTTAGGGTTTGTTTTTTCGTGATTTTTTTTTTAAAAAAAATTGGAAAGTAATGAACTTAGATTAGTTTGAATTGAGAAGAAGTAGTTGATGTTGAGGAATTGGAAAGGAAAGATCTTAACTTTCGTTGTTTATTGAATTGGGAAGTGATTATTGGTAAATTTGGTGTAGGAATTGTGTTACTTTTTTTATCTGGGTTTTTACAATGGGAGATTGTTTGGTGGTGCATACGGATCGTATTGTGAAGGCTAATGGAGCTGAGATTATGGATGGGAAGAATCCTGAAATGGTAGGGTCTTCGTCGGCAATAGCTGTAGATGAGAAGAAGGTGCT---GGAGGAGGAGGAGGAGGAGGAGGGTGATGAGGAGGTGCCGTTAATTGGTAGAGCAGAGTGCAGGATTTGCCAGGAGGAGGATTCTTTGGACAAGTTGGAGAGCCCATGTGCTTGCAGTGGAAGTCTCAAGGTGAAATCTTTTTCTCGTTTGGTTTTACTTGCAGGAGAATCTGATCTTTTTATGGTTATATGAAAATTGTTTACAGGACAAAAGGAAATGTGGGGTTAGATTTTCTTCTATTCTTTGTTTTCTTCATATGTGCCTTGAAATTGGAAGCACTTGTGCTTGCATTTGAGCTCAGTTCGATCACCTCCTAATACTGTTTAAATTAGTGATACTCGTTATGTGTATCCCAACTAGTTTGGCGCAAGTAGATATCACCAATATTGATTTGGTGATATCTTGGATGCCATGGTAAGAGGGGGGCGCTATGATGTGTGTGTGTCTGTAGCTTTGCATGAGGATGGTGCGCGTTTTTCTGTTCTTTTCTCTTTTTTCACTCTTTTGGTACCTCAGTATCATGTACTTCTTTTCAAGACTGTTGTTGGGGACCCCCTTTTCAAGCAAGCTTAACTTCACTTGAGTTGTGGTTATCCACCATGATGAGCCAAGACATGACCCTTACTCCTGTTAACAGGATATATCCTGCTATCTGATATAGTCATATCACATTCTACTTTCACTTCAGGAACTCTTTGCTTCCATAGCAGCACTTATTGAGCTATAGCTGTAATATCCTTGCCATTCCTGTCCTCCTGTTGCAGTTGCTTTCTTTTTATACATCTTTCACCCTCATCAAAGGTTTTCCTGCTTACAATCCAATTTTTTCTACTTATTCTCATTTTAGTTGCATAGATGGCAGCACTTTCCTTCTTTGCATTGTTTCCATTTTACTATACAGTAAGTTATGTGATTTTCTTTAATTGCCTGATAACTTAAGAATTGTTGTTTTCTGTCTCGCTTGCTTTGTTTTCTTTCAATTTGTGTGTCTGCTAATTATTTTGGTGGAAAACATTTACTGCAGTACACACACCGAGCATGCGTTCAACACTGGTGCAATGAGAAGGGGGATATTACTTGTGAGATTTGCCATCAGGTATGTGTCAATCTTCCAGTTGGTTTCCAACTTCCCATATTGTCTTGTATATTATAAGATGAAAGACACTGCATTCTATGCGAGAGTACTCCTGCTTGTGCCATTGAGTTCAAACCACAGGGTTCTCTTCCCTCTTGAATAGGAGTGGGGTTTTTAACCTGTCGGCACCCCAAGGGTAGTGGCTGTGGGTTTCCCTTGTCATTTAAAAAAAGGATCTTCTTGCCATGAGATCCTTTGTATTCATTCCTCTCGATTCATGATGGTTATGCAAGTTGACTATTTAAGTTTAAAACTGAACTATCCTTACTTTAAAATCAATATATATTGGCCCTATATTTGCTTAATTTTGTATCATCAAGCTTAGTTTGTTTTTTCAAGACAATGAAGTTTGGACATGTATTCGTCTCTTGGAGCTTCACCTATAGTTGTCCCTCTCTCTTGCTTATCCCTATTCCATAGTGATTTGACAATCAATATTTCTGGAATTATAAATAGCTTGACTCGTGATGATTCCGGAGGAACTCGAGATGCTGGGCTTGATACATTTGAAATTCTTCCCTTTGTCTTGATGCTCATTAGATGAATTCTTTCTGATATGTTTCATTTTCAATTGCAATGTGCAGCAATACCAGCCTGGTTACACTGTTCCTCCTCGACCTGTGGCTGAGGAGACAATTATTGATATTGG</genome_strand>
        <mrna_strand>TTTGGTATATTTTTCGGACAAATCTAAGATAAATACTATAA-TTAGCAAACACCGTTCAATTTGTTCCGCTACAAATCCGCAGAATTTTTTGGG----TTT-TTTCTCTTTCCATTTCCTGAATTTCTTCATTTTCCCAG.................................................................................................................................................................................................................................................................................................GAATTGTGTT-GTTTTTTTATCTGGGTTTTTAGAATGGGAGATTGTTTGGTAGTGCATACGGATCGTCTTGTGAAGGCTAATGGAGCTGAGATTATGGATGGGAAGAATCCTGAAATGGTGGGGTCTTCGTCGGCAATAGCTGTAGATGAGAAGAAGGTGCTGGAGGAGGAGGAGGAGGAGGAGGAGGGTGATGAGGAGGTGCCGTTAATTGGTAGAGCAGAGTGCAGGATTTGCCAGGAGGAGGATTCTTTGGACAAGTTGGAGAGCCCATGTGCTTGCAGTGGAAGCCTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACACACCGAACATGCGTTCAACACTGGTGCAATGAGAAGGGGGATATTACTTGTGAGATTTGCCATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACCAGCCTGGTTACACTGTTCCTCCTCGACCTGTGGCTGATGAGACAATTATTGATATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604375" ref_strand="+" ref_description="SGN-E604375 [74509]">
      <seq>gcaggatttgccaggaggaggattctttggacaagttggagagcccatgtgcttgcagtggaagcctcaagtacacacaccgaacatgcgttcaacactggtgcaatgagaagggggatattacttgtgagatttgccatcagcaataccagcctggttacactgttcctcctcgacctgtggctgaggagacaattattgatattgggggaggatggcaaatctctggcactcctttgaatttacatgatcctcgcgtcttggcaattgcagaggctgaacgccaacttctggaagctgaatatgatgattacaattctgcaaatgcaagtggtgcagcattctgtcgatctgctgctttaattttgatggctcttctactcttgcgccatgcattaccaatgacagaaacggatggagacgatgaagatccaactgctttcttttcgcttttcttacttcgggcagttggctttcttttaccctgctacatcatgctctgggccatcagcattttgcagcagcgcaggcaaagagaggaagctgcagcattggcagcaacacaatttgcagttgtgttacactctggacagccgagaagtgtacagtttaccatagcatcagctgcaccagcaacaccagcagcgcctgcttcagtggataacgtttaaacaataagacgatcgcgcttgatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="2628" stop="6534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2928" g_stop="2998" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2999" i_stop="3893" i_length="895">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3894" g_stop="3965" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="143" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3966" i_stop="4588" i_length="623">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4589" g_stop="4653" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="208" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4654" i_stop="5130" i_length="477">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5131" g_stop="5287" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="365" r_length="157" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5288" i_stop="5689" i_length="402">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5690" g_stop="5773" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="449" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5774" i_stop="5859" i_length="86">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.237" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5860" g_stop="5949" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="539" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5950" i_stop="6076" i_length="127">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6077" g_stop="6234" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="697" r_length="158" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E604375" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2928" e_stop="2998"/>
          <exon e_start="3894" e_stop="3965"/>
          <exon e_start="4589" e_stop="4653"/>
          <exon e_start="5131" e_stop="5287"/>
          <exon e_start="5690" e_stop="5773"/>
          <exon e_start="5860" e_stop="5949"/>
          <exon e_start="6077" e_stop="6234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGATTTGCCAGGAGGAGGATTCTTTGGACAAGTTGGAGAGCCCATGTGCTTGCAGTGGAAGTCTCAAGGTGAAATCTTTTTCTCGTTTGGTTTTACTTGCAGGAGAATCTGATCTTTTTATGGTTATATGAAAATTGTTTACAGGACAAAAGGAAATGTGGGGTTAGATTTTCTTCTATTCTTTGTTTTCTTCATATGTGCCTTGAAATTGGAAGCACTTGTGCTTGCATTTGAGCTCAGTTCGATCACCTCCTAATACTGTTTAAATTAGTGATACTCGTTATGTGTATCCCAACTAGTTTGGCGCAAGTAGATATCACCAATATTGATTTGGTGATATCTTGGATGCCATGGTAAGAGGGGGGCGCTATGATGTGTGTGTGTCTGTAGCTTTGCATGAGGATGGTGCGCGTTTTTCTGTTCTTTTCTCTTTTTTCACTCTTTTGGTACCTCAGTATCATGTACTTCTTTTCAAGACTGTTGTTGGGGACCCCCTTTTCAAGCAAGCTTAACTTCACTTGAGTTGTGGTTATCCACCATGATGAGCCAAGACATGACCCTTACTCCTGTTAACAGGATATATCCTGCTATCTGATATAGTCATATCACATTCTACTTTCACTTCAGGAACTCTTTGCTTCCATAGCAGCACTTATTGAGCTATAGCTGTAATATCCTTGCCATTCCTGTCCTCCTGTTGCAGTTGCTTTCTTTTTATACATCTTTCACCCTCATCAAAGGTTTTCCTGCTTACAATCCAATTTTTTCTACTTATTCTCATTTTAGTTGCATAGATGGCAGCACTTTCCTTCTTTGCATTGTTTCCATTTTACTATACAGTAAGTTATGTGATTTTCTTTAATTGCCTGATAACTTAAGAATTGTTGTTTTCTGTCTCGCTTGCTTTGTTTTCTTTCAATTTGTGTGTCTGCTAATTATTTTGGTGGAAAACATTTACTGCAGTACACACACCGAGCATGCGTTCAACACTGGTGCAATGAGAAGGGGGATATTACTTGTGAGATTTGCCATCAGGTATGTGTCAATCTTCCAGTTGGTTTCCAACTTCCCATATTGTCTTGTATATTATAAGATGAAAGACACTGCATTCTATGCGAGAGTACTCCTGCTTGTGCCATTGAGTTCAAACCACAGGGTTCTCTTCCCTCTTGAATAGGAGTGGGGTTTTTAACCTGTCGGCACCCCAAGGGTAGTGGCTGTGGGTTTCCCTTGTCATTTAAAAAAAGGATCTTCTTGCCATGAGATCCTTTGTATTCATTCCTCTCGATTCATGATGGTTATGCAAGTTGACTATTTAAGTTTAAAACTGAACTATCCTTACTTTAAAATCAATATATATTGGCCCTATATTTGCTTAATTTTGTATCATCAAGCTTAGTTTGTTTTTTCAAGACAATGAAGTTTGGACATGTATTCGTCTCTTGGAGCTTCACCTATAGTTGTCCCTCTCTCTTGCTTATCCCTATTCCATAGTGATTTGACAATCAATATTTCTGGAATTATAAATAGCTTGACTCGTGATGATTCCGGAGGAACTCGAGATGCTGGGCTTGATACATTTGAAATTCTTCCCTTTGTCTTGATGCTCATTAGATGAATTCTTTCTGATATGTTTCATTTTCAATTGCAATGTGCAGCAATACCAGCCTGGTTACACTGTTCCTCCTCGACCTGTGGCTGAGGAGACAATTATTGATATTGGGTGAGGTTAAGTTGGTTCATCTTTAAGGTTTCAAAAAAAAAGTTGGTTCATCTTTCATTTGTTTATGTACCACTAATGTGGTGGTAAATTCTCTTTTTTTCTGTAACCTTTTCAATTCAAACAAGCCATGATTAATGTTTTGACCTCTTTGGTTGTGCTTTTAACTAGTCGGTGTGGAATTAGTCACGAGGTTTGACTATTTTACATTCTGTTTAAGGCGGTGGTGCCCAGGTCAGCTTGCGTGCATCTTGACTAATTCCACTAAGTACCTGCCACCTCCCACCTCCTAGGGATAATTTTGTCCACCAAGGCTTGAGTAGATAAAAGAAACCGCCTAGTGTTCTTTTGTTTTCTCTGCTGATATTTGAACTATAGAGACCATGGTTCTCCCTTACTTCACTGACCACTAGGCCTCAAGGGTGCAAACTCGCTTTTATAGTTTTTAAACTAATTTTAAGCCTTCATATTTTGGTGCAGGGGAGGATGGCAAATCTCTGGTACCCCTTTGAATTTACATGATCCTCGCGTCTTGGCAATTGCAGAGGCTGAACGCCAACTTCTGGAAGCTGAATATGATGATTACAATTCTGCAAATGCAAGTGGTGCAGCTTTCTTTCGATCGGCTGCTTTAATTGTAAGCCCTTATACTACTTATTTCCCAAGATAACATTGTGAGCCTATTTACCAAGCAGTGGGTAAATACTTCTTCGTTGAATTTCAGTTAAAAGAATACACTAATCCAATTCAGGGTTTTGTTTGTCTAACTAAAATTTTAGGCAAGAAGTGATTACAATCTACAAATGTTTCTTTTCCCACTGTGCTTAAAGGTTTTTTTAATTTCCAAAGTTTAACTTTTCACATTTTAATTGGTTTCGAAAAAGAAATGCCAAGAGATACCAATCAAAATGCAAAGTGTAGTCGCTTGTTCAAGCTTTATATAAAGATTGGCCTCTCAGTTGCTGCTGATCTATCTCGACTTGTCTCTCCTTTATGGATTATTGGATGTCCAGTGTTAAATGATAATTTTCATTGACAGTTGATGGCTCTTCTACTATTGCGCCATGCATTACCAATGACAGATACAGATGGAGATGATGAAGATCCAACTGCTTTCTTTTCGGTTAGTTGACTAGCTGTGCACTCCATCTTTATATTTCTCTTTAAAAAGATTTCTTAACGGTGGATCTAACTCATCCATCTCTGCAGCTTTTCTTACTCCGGGCAGTTGGCTTTCTTTTACCCTGCTACATCATGCTCTGGGCCATCAGCATCTTGCAGCAGCGCAGACAAAGAGAGGTAGGTGTTAGTTTTGCTAGTCCTGCATCAGTGAATTGTTTTTGAGCTAGTGTGCTGACATGACGTGCACGTCTCTATTTTGCTACAACTGATGTAAAAAACGCGTATTCATTATTTGTTCGAGCAGGAAGCTGCAGCATTGGCAGCAACACAATTTGCAGTTGTGTTACACTCTGGACAGCCGAGAAGTGTACAGTTTACCATAGCTTCAGCTGCACCAGCAACACCAGCAGCGCCTGCTTCAGTGGATAATGTTTAAACAACAAGATGATCGTGCTTGATCTC</genome_strand>
        <mrna_strand>GCAGGATTTGCCAGGAGGAGGATTCTTTGGACAAGTTGGAGAGCCCATGTGCTTGCAGTGGAAGCCTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACACACCGAACATGCGTTCAACACTGGTGCAATGAGAAGGGGGATATTACTTGTGAGATTTGCCATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACCAGCCTGGTTACACTGTTCCTCCTCGACCTGTGGCTGAGGAGACAATTATTGATATTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGATGGCAAATCTCTGGCACTCCTTTGAATTTACATGATCCTCGCGTCTTGGCAATTGCAGAGGCTGAACGCCAACTTCTGGAAGCTGAATATGATGATTACAATTCTGCAAATGCAAGTGGTGCAGCATTCTGTCGATCTGCTGCTTTAATT..................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGCTCTTCTACTCTTGCGCCATGCATTACCAATGACAGAAACGGATGGAGACGATGAAGATCCAACTGCTTTCTTTTCG......................................................................................CTTTTCTTACTTCGGGCAGTTGGCTTTCTTTTACCCTGCTACATCATGCTCTGGGCCATCAGCATTTTGCAGCAGCGCAGGCAAAGAGAG...............................................................................................................................GAAGCTGCAGCATTGGCAGCAACACAATTTGCAGTTGTGTTACACTCTGGACAGCCGAGAAGTGTACAGTTTACCATAGCATCAGCTGCACCAGCAACACCAGCAGCGCCTGCTTCAGTGGATAACGTTTAAACAATAAGACGATCGCGCTTGATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698569" ref_strand="+" ref_description="SGN-E698569 [FA06DC02]">
      <seq>gaagtctcaagtacacacccctagcatgccgtcaacactggcgcaatgagaagggggatattacttgtgagatttgccatcatcaataccagcctggttacactgttcctcctcgacctgtggccgaggagacaattattgatattgggggaggatggcaaatctctggtacccctttgaatttacatgatcctcgcgtcttggcaattgcagaggctgaacgccaacttctggaagctgaatatgatgattacaattctgccaatgcaagcggtgcagctttctttcgatcggctgctttaattttgatggctcttctactattgcgccatgcattaccaatgacagatacagatggagatgatgaacatccaactgctttcttttcgcttttcttactccgggcagctggctttcttttaccctgctacctcatgctctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="3588" stop="6213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3894" g_stop="3965" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="83" r_length="72" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3966" i_stop="4588" i_length="623">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4589" g_stop="4653" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="148" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4654" i_stop="5130" i_length="477">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5131" g_stop="5287" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="305" r_length="157" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5288" i_stop="5689" i_length="402">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5690" g_stop="5773" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="389" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5774" i_stop="5859" i_length="86">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.237" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5860" g_stop="5913" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="443" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E698569" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3894" e_stop="3965"/>
          <exon e_start="4589" e_stop="4653"/>
          <exon e_start="5131" e_stop="5287"/>
          <exon e_start="5690" e_stop="5773"/>
          <exon e_start="5860" e_stop="5913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACACACCGAGCATGCGTTCAACACTGGTGCAATGAGAAGGGGGATATTACTTGTGAGATTTGCCATCAGGTATGTGTCAATCTTCCAGTTGGTTTCCAACTTCCCATATTGTCTTGTATATTATAAGATGAAAGACACTGCATTCTATGCGAGAGTACTCCTGCTTGTGCCATTGAGTTCAAACCACAGGGTTCTCTTCCCTCTTGAATAGGAGTGGGGTTTTTAACCTGTCGGCACCCCAAGGGTAGTGGCTGTGGGTTTCCCTTGTCATTTAAAAAAAGGATCTTCTTGCCATGAGATCCTTTGTATTCATTCCTCTCGATTCATGATGGTTATGCAAGTTGACTATTTAAGTTTAAAACTGAACTATCCTTACTTTAAAATCAATATATATTGGCCCTATATTTGCTTAATTTTGTATCATCAAGCTTAGTTTGTTTTTTCAAGACAATGAAGTTTGGACATGTATTCGTCTCTTGGAGCTTCACCTATAGTTGTCCCTCTCTCTTGCTTATCCCTATTCCATAGTGATTTGACAATCAATATTTCTGGAATTATAAATAGCTTGACTCGTGATGATTCCGGAGGAACTCGAGATGCTGGGCTTGATACATTTGAAATTCTTCCCTTTGTCTTGATGCTCATTAGATGAATTCTTTCTGATATGTTTCATTTTCAATTGCAATGTGCAGCAATACCAGCCTGGTTACACTGTTCCTCCTCGACCTGTGGCTGAGGAGACAATTATTGATATTGGGTGAGGTTAAGTTGGTTCATCTTTAAGGTTTCAAAAAAAAAGTTGGTTCATCTTTCATTTGTTTATGTACCACTAATGTGGTGGTAAATTCTCTTTTTTTCTGTAACCTTTTCAATTCAAACAAGCCATGATTAATGTTTTGACCTCTTTGGTTGTGCTTTTAACTAGTCGGTGTGGAATTAGTCACGAGGTTTGACTATTTTACATTCTGTTTAAGGCGGTGGTGCCCAGGTCAGCTTGCGTGCATCTTGACTAATTCCACTAAGTACCTGCCACCTCCCACCTCCTAGGGATAATTTTGTCCACCAAGGCTTGAGTAGATAAAAGAAACCGCCTAGTGTTCTTTTGTTTTCTCTGCTGATATTTGAACTATAGAGACCATGGTTCTCCCTTACTTCACTGACCACTAGGCCTCAAGGGTGCAAACTCGCTTTTATAGTTTTTAAACTAATTTTAAGCCTTCATATTTTGGTGCAGGGGAGGATGGCAAATCTCTGGTACCCCTTTGAATTTACATGATCCTCGCGTCTTGGCAATTGCAGAGGCTGAACGCCAACTTCTGGAAGCTGAATATGATGATTACAATTCTGCAAATGCAAGTGGTGCAGCTTTCTTTCGATCGGCTGCTTTAATTGTAAGCCCTTATACTACTTATTTCCCAAGATAACATTGTGAGCCTATTTACCAAGCAGTGGGTAAATACTTCTTCGTTGAATTTCAGTTAAAAGAATACACTAATCCAATTCAGGGTTTTGTTTGTCTAACTAAAATTTTAGGCAAGAAGTGATTACAATCTACAAATGTTTCTTTTCCCACTGTGCTTAAAGGTTTTTTTAATTTCCAAAGTTTAACTTTTCACATTTTAATTGGTTTCGAAAAAGAAATGCCAAGAGATACCAATCAAAATGCAAAGTGTAGTCGCTTGTTCAAGCTTTATATAAAGATTGGCCTCTCAGTTGCTGCTGATCTATCTCGACTTGTCTCTCCTTTATGGATTATTGGATGTCCAGTGTTAAATGATAATTTTCATTGACAGTTGATGGCTCTTCTACTATTGCGCCATGCATTACCAATGACAGATACAGATGGAGATGATGAAGATCCAACTGCTTTCTTTTCGGTTAGTTGACTAGCTGTGCACTCCATCTTTATATTTCTCTTTAAAAAGATTTCTTAACGGTGGATCTAACTCATCCATCTCTGCAGCTTTTCTTACTCCGGGCAGTTGGCTTTCTTTTACCCTGCTACATCATGCTCTGG</genome_strand>
        <mrna_strand>TACACACCCCTAGCATGCCGTCAACACTGGCGCAATGAGAAGGGGGATATTACTTGTGAGATTTGCCATCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACCAGCCTGGTTACACTGTTCCTCCTCGACCTGTGGCCGAGGAGACAATTATTGATATTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGATGGCAAATCTCTGGTACCCCTTTGAATTTACATGATCCTCGCGTCTTGGCAATTGCAGAGGCTGAACGCCAACTTCTGGAAGCTGAATATGATGATTACAATTCTGCCAATGCAAGCGGTGCAGCTTTCTTTCGATCGGCTGCTTTAATT..................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGCTCTTCTACTATTGCGCCATGCATTACCAATGACAGATACAGATGGAGATGATGAACATCCAACTGCTTTCTTTTCG......................................................................................CTTTTCTTACTCCGGGCAGCTGGCTTTCTTTTACCCTGCTACCTCATGCTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375247" ref_strand="-" ref_description="SGN-E375247 [TUS-34-H9]">
      <seq>agttcctctggtacccctatgaatttacatgatcctcgcgtcttggcaattgcagaggctgaacgccaacttctggaagctgaatatgatgattacaattctgcaaatgcaagtggtgcagctttctttcgatcggctgctttaattttgatggctcttttactattgcgccatgcattaccaatgacagatacagatggagatgatgaagatccaactgcttttttttcgcttttcttactccgggcagttggctttcttttaccctgctacatcatgctttgggccatcagcatcttgcagcagcgcagacaaagagaggaagctgcagcattggcagcaacacaatttgcagttgtgttacactttggacagccgagaagtgtacagtttaccatagcttcagttgcaccagcaacaccagcagcgcctgcttcagtggataatgtttaaacaacaagatgatcgtgcttgattttttattttgaagctaaatactgccttatgctagatttgtttgtctgttatcatatttcatatattattatatggggaagtttgaaaatgaattgttgtattaccattttgcccccctttactgttttaaaaatttgattaaatataaatatttttaattaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="4846" stop="61072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5142" g_stop="5287" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5288" i_stop="5689" i_length="402">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5690" g_stop="5773" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="231" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5774" i_stop="5859" i_length="86">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.237" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5860" g_stop="5949" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="321" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5950" i_stop="6076" i_length="127">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6077" g_stop="6392" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="637" r_length="316" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6393" i_stop="9469" i_length="3077">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.448" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9470" g_stop="9513" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="681" r_length="44" r_score="0.568"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E375247" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375247" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5142" e_stop="5287"/>
          <exon e_start="5690" e_stop="5773"/>
          <exon e_start="5860" e_stop="5949"/>
          <exon e_start="6077" e_stop="6392"/>
          <exon e_start="9470" e_stop="9513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAT-CTCTGGTACCCCTTTGAATTTACATGATCCTCGCGTCTTGGCAATTGCAGAGGCTGAACGCCAACTTCTGGAAGCTGAATATGATGATTACAATTCTGCAAATGCAAGTGGTGCAGCTTTCTTTCGATCGGCTGCTTTAATTGTAAGCCCTTATACTACTTATTTCCCAAGATAACATTGTGAGCCTATTTACCAAGCAGTGGGTAAATACTTCTTCGTTGAATTTCAGTTAAAAGAATACACTAATCCAATTCAGGGTTTTGTTTGTCTAACTAAAATTTTAGGCAAGAAGTGATTACAATCTACAAATGTTTCTTTTCCCACTGTGCTTAAAGGTTTTTTTAATTTCCAAAGTTTAACTTTTCACATTTTAATTGGTTTCGAAAAAGAAATGCCAAGAGATACCAATCAAAATGCAAAGTGTAGTCGCTTGTTCAAGCTTTATATAAAGATTGGCCTCTCAGTTGCTGCTGATCTATCTCGACTTGTCTCTCCTTTATGGATTATTGGATGTCCAGTGTTAAATGATAATTTTCATTGACAGTTGATGGCTCTTCTACTATTGCGCCATGCATTACCAATGACAGATACAGATGGAGATGATGAAGATCCAACTGCTTTCTTTTCGGTTAGTTGACTAGCTGTGCACTCCATCTTTATATTTCTCTTTAAAAAGATTTCTTAACGGTGGATCTAACTCATCCATCTCTGCAGCTTTTCTTACTCCGGGCAGTTGGCTTTCTTTTACCCTGCTACATCATGCTCTGGGCCATCAGCATCTTGCAGCAGCGCAGACAAAGAGAGGTAGGTGTTAGTTTTGCTAGTCCTGCATCAGTGAATTGTTTTTGAGCTAGTGTGCTGACATGACGTGCACGTCTCTATTTTGCTACAACTGATGTAAAAAACGCGTATTCATTATTTGTTCGAGCAGGAAGCTGCAGCATTGGCAGCAACACAATTTGCAGTTGTGTTACACTCTGGACAGCCGAGAAGTGTACAGTTTACCATAGCTTCAGCTGCACCAGCAACACCAGCAGCGCCTGCTTCAGTGGATAATGTTTAAACAACAAGATGATCGTGCTTGATCTCTTATTTTGAAGCTAAATACTGCCTTATGCTAGATTTGTTTGTCTGTTATCATATTTCATATATTATTATATGGGGAAGTTCGAAAATGAATTGTTGTATTACCATTTTGCCCCCCTTTACTGTTTTAAAAATTTGATTAAATATAAATATTTTTAATTATATAATGGTAGAATTTGAAGTTCTTTTAAGTCTTTCGTGAAAAGTTGAATCACCATTTTGCTTCTCTGTTAAATTGAAGTTTGATTAAATATATATATTTTATAGTATAATGGTAGAAATTGAAGTTCTTAAGCCTTATAATAATTAAAATATCATGTCAAATTATATAGTATTTTCTTTAATAGCTTGAGATTGTGATGAAAATATGATTTTGACAGTAATTCATGCCTTTCACAGGACTCATGTGCAAAGCACAATTAGTCTCACTAAAAATAGGAAGCATCAAAGATGAAAAGTTGGAATCATCATTTTACTTTTAGGCTAAATTAAACATCTAATTAATTAAATAATATTATTTTAATTATTTTTTGACTTGTAATTTATTTATTAAAAAGGAAATGCGAAAGAATAAGAGTCAATTATGATTTCTAGAATTTTAAATAAATACATAAATCAAGGTTTCCTTCTTTTAATCTTAAATTAAATAATATGAAGAGTTGTAGCTAAACCAATATATATCATTACCAATTACGAATTTGTCATCTTTATTGCACTTTAATTCTTTAGTTATTTCCTTCTAATTAAGTTTTCTTAGTTGTAAATTTGAATTACTTAATAACATTCTACTTAATAAGAAGGAGAGTTTCATCTTCTACTAATTAATGTTAAAATATTTTATCTTTCTGAAATGTATAACTATTAATTTAATTTCAATATTTTTACTTTATTCTATAAGACAAAAGAGACACTTTAAGGACGTTAATCATAAGGTAGACTAGTGTGCCTCTATATTTGTTTTTGCTACTTTATTTTGTCTTTTAAAACAAATATAAATTATAATAAGGAGATGACTAAATACAAAAGAGATTCTTCTTACGAGTTAACCATAAACATTTTTTATTAACTAAAAATTACTTGATAATTTTATATTTTTTATTTTTTTTCTTAATAGGTATAAAAAGAGCTAAAACGACAGTTTAAATAAAACGTAAATATTTTCAAACATAGACAACTCCCAAACAAACTCAAGTAATATCACTATCAAATTTAGTAATCTTGTGGCTTACATTTCATTTAAAGGTTTTTGAGGGTTAAAAAGGAGTGGTAATTTTTAAGGATATGAGAATATAGAAAAGTTGTCCATGTTATAAGATCAATTTTTATATATTCAAATATGATGTTAAAGTAGAGCAAAGCATCTTCTTTAAACACTTATATATAGATATATATTTTTTGTAAACATTCTCTTTGCAGTGTCCCACTCTTTGTTTGTTCAAATTTTAAACTTTAACAAAAGATTATTAGTGTCTTTGAGCCCACTAATTATCTAAAGCTTGTTGTTTTCTAACATTAATTTATGTCTTAAAAATCATTTGCTATTTTTATGTCCTTGTCTTGCTTAGCAGATAAGGACTCTTTTCTGTTTTGATTAGATTTCTCTTCTATTATAACACACAAAAATAACGAATTCAAAATTTGAAATTAATCAAATTACATGGGGCTATGGAGTAAATTGCATGTATATTTTATTTTGATATCGTTATTTAATTTGTATTTTTATCTTTTAAAAAAATTTCACATATAGTTACTTCCGACAACTTCAGACATAAAGTGTTTGGAGTTGATTTTGACAAAGACTAACTTTAGAGTTTAGATATACGGTCCAGGTTTCAAACGTGTGAAGTTCAAACAAAATAATTGAACTTCAGTCATACAGGCCTGACGCTCAGACAAAAATGACTAAAGTTAATTTTTGTTGCTTGAACTTCACTCATATACAACTTTAGATATTTGATATTCTCAAGTCTTACTTCGGACGCTACATATTTGAAATGGGTATATATATAAAAAAAAATTAAAAATTGGATAGACATTGAATCTCTCTTGGTTTTTAGTTGGATGTACTTCGTCATAAGTTGAATTTTCTTATTGAAAATCTTGATTTCGCCACCTGATAACCGAAAAATACTATATCTGAATTAGAATATGGATCCAATCTTCTTCTTGTCCAAATAAGTAAAAGGTTCTTAAGGGCATAGGATGAAATCATGAAAGCCTCTTCAAGATTCTCAACTTTAAGACAAGAGTATATCTAATAAGTATGCCAACCTTAATTTAGAAAATGTGCACTAGAAGCAAATTAATAGGTCCCTCCCAACACATAAATAAACCTACTTTTATTACCACTATTTGATTACGTACGAAGTTTATAAGAATATAAAAAAAAAAAGACTTTTGAAGCTATATCGAATGATGCATATTGACGAAGTAAATTGTTTCCAATCGAAAGATCCTTCATTACTAATTTTGATTAAGAATATGACTTAGTGATTAATAGATGAATGATATCAAATACTTTATAAATATAAACGTGATGCATATAAATTAATCTGAATATCATGGTTATAAAAAAAAGTTTAAATATTTCAATCATTCTATCACAATCGGTGATGTATTATACAAAAAAGCTTTATCTACTATGACAAGACAAAAGGTAAAAGTGAGCAGAGGGAACCAATGAAAGTGAAAACATGTTGTATTTGTATACATTGGAAACACAATCCATTCTCCATAACACAAGTTCATGGAGCATTAAAACATGTACTTTAGAATGTTCCAACTTTGATGAGATTTACTAATATTTTATATCGATCGAAAATAAATCTAAATTATCATTTTTTTTGTGAATTTGACATATTAACTATTGATTGAGTTTATTTTTTTATTTGAATTATCACTGTTTATATATAAAAATGCATCTTGAAGCTGATTAGGCCAACTATTATTTGTTTCCTTTTTCTATCTGAACTATCACCATCTATTCAATTAGATGTATTCTAATACATAAACAATGTCAGTTTAAGCAAGAAAAAGAGAATAACTGATAATTAAAATATGATACTCATAATTTTTGATCATTATCTTTATTTTTTACAAAATAAAATTAAAGCAATATAAAGAAAAAGTTGGTCTTCCTGGTTTAACGAGAAAAAACAAAAACAATTTCAAATTTTAAGAGAAAGTGACACTTGAATTGGTTTATCTGAATATAAGAAATTAAACTAAAAATATAAAGACTAAAAAAGAAAAGCATAAAGAAACAGATTTCGCACAAGAAAC</genome_strand>
        <mrna_strand>AGTTCCTCTGGTACCCCTATGAATTTACATGATCCTCGCGTCTTGGCAATTGCAGAGGCTGAACGCCAACTTCTGGAAGCTGAATATGATGATTACAATTCTGCAAATGCAAGTGGTGCAGCTTTCTTTCGATCGGCTGCTTTAATT..................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGCTCTTTTACTATTGCGCCATGCATTACCAATGACAGATACAGATGGAGATGATGAAGATCCAACTGCTTTTTTTTCG......................................................................................CTTTTCTTACTCCGGGCAGTTGGCTTTCTTTTACCCTGCTACATCATGCTTTGGGCCATCAGCATCTTGCAGCAGCGCAGACAAAGAGAG...............................................................................................................................GAAGCTGCAGCATTGGCAGCAACACAATTTGCAGTTGTGTTACACTTTGGACAGCCGAGAAGTGTACAGTTTACCATAGCTTCAGTTGCACCAGCAACACCAGCAGCGCCTGCTTCAGTGGATAATGTTTAAACAACAAGATGATCGTGCTTGATTTTTTATTTTGAAGCTAAATACTGCCTTATGCTAGATTTGTTTGTCTGTTATCATATTTCATATATTATTATATGGGGAAGTTTGAAAATGAATTGTTGTATTACCATTTTGCCCCCCTTTACTGTTTTAAAAATTTGATTAAATATAAATATTTTTAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375192" ref_strand="-" ref_description="SGN-E375192 [TUS-34-L15]">
      <seq>acccctttgaatttacatgatcctcgcgtcttggcaattgcagaggctgaacgccaacttctggaagctgaatatgatgattacaattctgcaaatgcaagtggtgcagctttctttcgatcggctgctttaattttgatggctcttttactattgcgccatgcattaccaatgacagatacagatggagatgatgaagatccaactgctttcttttcgctttttttactccgggcagttggctttcttttaccctgctacatcatgctctgggccatcagcatcttgcagcagcgcagacaaagagaggaagctgcagcattggcagcaacacaatttgcagttgtgttacactttggacagccgagaagtgtacagtttaccatagcttcagttgcaccagcaacaccagcagcgcctgcttcagtggataatgtttaaacaacaagatgatcgtgcttgattttttattttgaagctaaatactgccttatgctagatttgtttgtctgttatcatatttcatatattattatatggggaagttcgaaaatgaattgttgtattaccattttgcccccctttactgttttaaaaatttgattaaatataaatatttttaattaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="4853" stop="61072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5153" g_stop="5287" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5288" i_stop="5689" i_length="402">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5690" g_stop="5773" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="219" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5774" i_stop="5859" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.237" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5860" g_stop="5949" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="309" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5950" i_stop="6076" i_length="127">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6077" g_stop="6392" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="625" r_length="316" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6393" i_stop="9469" i_length="3077">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.448" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9470" g_stop="9513" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="669" r_length="44" r_score="0.568"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E375192" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375192" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5153" e_stop="5287"/>
          <exon e_start="5690" e_stop="5773"/>
          <exon e_start="5860" e_stop="5949"/>
          <exon e_start="6077" e_stop="6392"/>
          <exon e_start="9470" e_stop="9513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCTTTGAATTTACATGATCCTCGCGTCTTGGCAATTGCAGAGGCTGAACGCCAACTTCTGGAAGCTGAATATGATGATTACAATTCTGCAAATGCAAGTGGTGCAGCTTTCTTTCGATCGGCTGCTTTAATTGTAAGCCCTTATACTACTTATTTCCCAAGATAACATTGTGAGCCTATTTACCAAGCAGTGGGTAAATACTTCTTCGTTGAATTTCAGTTAAAAGAATACACTAATCCAATTCAGGGTTTTGTTTGTCTAACTAAAATTTTAGGCAAGAAGTGATTACAATCTACAAATGTTTCTTTTCCCACTGTGCTTAAAGGTTTTTTTAATTTCCAAAGTTTAACTTTTCACATTTTAATTGGTTTCGAAAAAGAAATGCCAAGAGATACCAATCAAAATGCAAAGTGTAGTCGCTTGTTCAAGCTTTATATAAAGATTGGCCTCTCAGTTGCTGCTGATCTATCTCGACTTGTCTCTCCTTTATGGATTATTGGATGTCCAGTGTTAAATGATAATTTTCATTGACAGTTGATGGCTCTTCTACTATTGCGCCATGCATTACCAATGACAGATACAGATGGAGATGATGAAGATCCAACTGCTTTCTTTTCGGTTAGTTGACTAGCTGTGCACTCCATCTTTATATTTCTCTTTAAAAAGATTTCTTAACGGTGGATCTAACTCATCCATCTCTGCAGCTTTTCTTACTCCGGGCAGTTGGCTTTCTTTTACCCTGCTACATCATGCTCTGGGCCATCAGCATCTTGCAGCAGCGCAGACAAAGAGAGGTAGGTGTTAGTTTTGCTAGTCCTGCATCAGTGAATTGTTTTTGAGCTAGTGTGCTGACATGACGTGCACGTCTCTATTTTGCTACAACTGATGTAAAAAACGCGTATTCATTATTTGTTCGAGCAGGAAGCTGCAGCATTGGCAGCAACACAATTTGCAGTTGTGTTACACTCTGGACAGCCGAGAAGTGTACAGTTTACCATAGCTTCAGCTGCACCAGCAACACCAGCAGCGCCTGCTTCAGTGGATAATGTTTAAACAACAAGATGATCGTGCTTGATCTCTTATTTTGAAGCTAAATACTGCCTTATGCTAGATTTGTTTGTCTGTTATCATATTTCATATATTATTATATGGGGAAGTTCGAAAATGAATTGTTGTATTACCATTTTGCCCCCCTTTACTGTTTTAAAAATTTGATTAAATATAAATATTTTTAATTATATAATGGTAGAATTTGAAGTTCTTTTAAGTCTTTCGTGAAAAGTTGAATCACCATTTTGCTTCTCTGTTAAATTGAAGTTTGATTAAATATATATATTTTATAGTATAATGGTAGAAATTGAAGTTCTTAAGCCTTATAATAATTAAAATATCATGTCAAATTATATAGTATTTTCTTTAATAGCTTGAGATTGTGATGAAAATATGATTTTGACAGTAATTCATGCCTTTCACAGGACTCATGTGCAAAGCACAATTAGTCTCACTAAAAATAGGAAGCATCAAAGATGAAAAGTTGGAATCATCATTTTACTTTTAGGCTAAATTAAACATCTAATTAATTAAATAATATTATTTTAATTATTTTTTGACTTGTAATTTATTTATTAAAAAGGAAATGCGAAAGAATAAGAGTCAATTATGATTTCTAGAATTTTAAATAAATACATAAATCAAGGTTTCCTTCTTTTAATCTTAAATTAAATAATATGAAGAGTTGTAGCTAAACCAATATATATCATTACCAATTACGAATTTGTCATCTTTATTGCACTTTAATTCTTTAGTTATTTCCTTCTAATTAAGTTTTCTTAGTTGTAAATTTGAATTACTTAATAACATTCTACTTAATAAGAAGGAGAGTTTCATCTTCTACTAATTAATGTTAAAATATTTTATCTTTCTGAAATGTATAACTATTAATTTAATTTCAATATTTTTACTTTATTCTATAAGACAAAAGAGACACTTTAAGGACGTTAATCATAAGGTAGACTAGTGTGCCTCTATATTTGTTTTTGCTACTTTATTTTGTCTTTTAAAACAAATATAAATTATAATAAGGAGATGACTAAATACAAAAGAGATTCTTCTTACGAGTTAACCATAAACATTTTTTATTAACTAAAAATTACTTGATAATTTTATATTTTTTATTTTTTTTCTTAATAGGTATAAAAAGAGCTAAAACGACAGTTTAAATAAAACGTAAATATTTTCAAACATAGACAACTCCCAAACAAACTCAAGTAATATCACTATCAAATTTAGTAATCTTGTGGCTTACATTTCATTTAAAGGTTTTTGAGGGTTAAAAAGGAGTGGTAATTTTTAAGGATATGAGAATATAGAAAAGTTGTCCATGTTATAAGATCAATTTTTATATATTCAAATATGATGTTAAAGTAGAGCAAAGCATCTTCTTTAAACACTTATATATAGATATATATTTTTTGTAAACATTCTCTTTGCAGTGTCCCACTCTTTGTTTGTTCAAATTTTAAACTTTAACAAAAGATTATTAGTGTCTTTGAGCCCACTAATTATCTAAAGCTTGTTGTTTTCTAACATTAATTTATGTCTTAAAAATCATTTGCTATTTTTATGTCCTTGTCTTGCTTAGCAGATAAGGACTCTTTTCTGTTTTGATTAGATTTCTCTTCTATTATAACACACAAAAATAACGAATTCAAAATTTGAAATTAATCAAATTACATGGGGCTATGGAGTAAATTGCATGTATATTTTATTTTGATATCGTTATTTAATTTGTATTTTTATCTTTTAAAAAAATTTCACATATAGTTACTTCCGACAACTTCAGACATAAAGTGTTTGGAGTTGATTTTGACAAAGACTAACTTTAGAGTTTAGATATACGGTCCAGGTTTCAAACGTGTGAAGTTCAAACAAAATAATTGAACTTCAGTCATACAGGCCTGACGCTCAGACAAAAATGACTAAAGTTAATTTTTGTTGCTTGAACTTCACTCATATACAACTTTAGATATTTGATATTCTCAAGTCTTACTTCGGACGCTACATATTTGAAATGGGTATATATATAAAAAAAAATTAAAAATTGGATAGACATTGAATCTCTCTTGGTTTTTAGTTGGATGTACTTCGTCATAAGTTGAATTTTCTTATTGAAAATCTTGATTTCGCCACCTGATAACCGAAAAATACTATATCTGAATTAGAATATGGATCCAATCTTCTTCTTGTCCAAATAAGTAAAAGGTTCTTAAGGGCATAGGATGAAATCATGAAAGCCTCTTCAAGATTCTCAACTTTAAGACAAGAGTATATCTAATAAGTATGCCAACCTTAATTTAGAAAATGTGCACTAGAAGCAAATTAATAGGTCCCTCCCAACACATAAATAAACCTACTTTTATTACCACTATTTGATTACGTACGAAGTTTATAAGAATATAAAAAAAAAAAGACTTTTGAAGCTATATCGAATGATGCATATTGACGAAGTAAATTGTTTCCAATCGAAAGATCCTTCATTACTAATTTTGATTAAGAATATGACTTAGTGATTAATAGATGAATGATATCAAATACTTTATAAATATAAACGTGATGCATATAAATTAATCTGAATATCATGGTTATAAAAAAAAGTTTAAATATTTCAATCATTCTATCACAATCGGTGATGTATTATACAAAAAAGCTTTATCTACTATGACAAGACAAAAGGTAAAAGTGAGCAGAGGGAACCAATGAAAGTGAAAACATGTTGTATTTGTATACATTGGAAACACAATCCATTCTCCATAACACAAGTTCATGGAGCATTAAAACATGTACTTTAGAATGTTCCAACTTTGATGAGATTTACTAATATTTTATATCGATCGAAAATAAATCTAAATTATCATTTTTTTTGTGAATTTGACATATTAACTATTGATTGAGTTTATTTTTTTATTTGAATTATCACTGTTTATATATAAAAATGCATCTTGAAGCTGATTAGGCCAACTATTATTTGTTTCCTTTTTCTATCTGAACTATCACCATCTATTCAATTAGATGTATTCTAATACATAAACAATGTCAGTTTAAGCAAGAAAAAGAGAATAACTGATAATTAAAATATGATACTCATAATTTTTGATCATTATCTTTATTTTTTACAAAATAAAATTAAAGCAATATAAAGAAAAAGTTGGTCTTCCTGGTTTAACGAGAAAAAACAAAAACAATTTCAAATTTTAAGAGAAAGTGACACTTGAATTGGTTTATCTGAATATAAGAAATTAAACTAAAAATATAAAGACTAAAAAAGAAAAGCATAAAGAAACAGATTTCGCACAAGAAAC</genome_strand>
        <mrna_strand>ACCCCTTTGAATTTACATGATCCTCGCGTCTTGGCAATTGCAGAGGCTGAACGCCAACTTCTGGAAGCTGAATATGATGATTACAATTCTGCAAATGCAAGTGGTGCAGCTTTCTTTCGATCGGCTGCTTTAATT..................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGCTCTTTTACTATTGCGCCATGCATTACCAATGACAGATACAGATGGAGATGATGAAGATCCAACTGCTTTCTTTTCG......................................................................................CTTTTTTTACTCCGGGCAGTTGGCTTTCTTTTACCCTGCTACATCATGCTCTGGGCCATCAGCATCTTGCAGCAGCGCAGACAAAGAGAG...............................................................................................................................GAAGCTGCAGCATTGGCAGCAACACAATTTGCAGTTGTGTTACACTTTGGACAGCCGAGAAGTGTACAGTTTACCATAGCTTCAGTTGCACCAGCAACACCAGCAGCGCCTGCTTCAGTGGATAATGTTTAAACAACAAGATGATCGTGCTTGATTTTTTATTTTGAAGCTAAATACTGCCTTATGCTAGATTTGTTTGTCTGTTATCATATTTCATATATTATTATATGGGGAAGTTCGAAAATGAATTGTTGTATTACCATTTTGCCCCCCTTTACTGTTTTAAAAATTTGATTAAATATAAATATTTTTAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252697" ref_strand="-" ref_description="SGN-E252697 [cLEG-16-E2]">
      <seq>ggaagctgaatatgatgattacaattctgcaaatgcaagtggtgcagctttctttcgatcggctgctttaattttgatggctcttctactattgcgccatgcattaccaatgacagatacagatggagatgatgaagatccaactgctttcttttcgcttttcttactccgggcagttggctttcttttaccctgctacatcatgctatgggccatcagcatcttgcagcagcgcagacaaagagaggaagctgcagcattggcagcaacacaatttgcagttgtgttacactctggacagccgagaagtgtacagtttaccatagcttcagatgcaccagcaacaccagcagcgcctgcttcagtggataatgtttaaacaacaagatgatcgtgcttgatctcttattttgaagctaaatactgccttatgctaaatttgtttgtctgttatcatatttcatatattattatatggggaagttcgaaaatgaattgttgtattaccattttgcccccctttactgttttaaaaatttgattaaatataaatatttttaattaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="4915" stop="61072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5215" g_stop="5287" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5288" i_stop="5689" i_length="402">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5690" g_stop="5773" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="157" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5774" i_stop="5859" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.237" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5860" g_stop="5949" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="247" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5950" i_stop="6076" i_length="127">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6077" g_stop="6392" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="563" r_length="316" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6393" i_stop="9469" i_length="3077">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.448" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9470" g_stop="9513" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="607" r_length="44" r_score="0.568"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E252697" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252697" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5215" e_stop="5287"/>
          <exon e_start="5690" e_stop="5773"/>
          <exon e_start="5860" e_stop="5949"/>
          <exon e_start="6077" e_stop="6392"/>
          <exon e_start="9470" e_stop="9513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCTGAATATGATGATTACAATTCTGCAAATGCAAGTGGTGCAGCTTTCTTTCGATCGGCTGCTTTAATTGTAAGCCCTTATACTACTTATTTCCCAAGATAACATTGTGAGCCTATTTACCAAGCAGTGGGTAAATACTTCTTCGTTGAATTTCAGTTAAAAGAATACACTAATCCAATTCAGGGTTTTGTTTGTCTAACTAAAATTTTAGGCAAGAAGTGATTACAATCTACAAATGTTTCTTTTCCCACTGTGCTTAAAGGTTTTTTTAATTTCCAAAGTTTAACTTTTCACATTTTAATTGGTTTCGAAAAAGAAATGCCAAGAGATACCAATCAAAATGCAAAGTGTAGTCGCTTGTTCAAGCTTTATATAAAGATTGGCCTCTCAGTTGCTGCTGATCTATCTCGACTTGTCTCTCCTTTATGGATTATTGGATGTCCAGTGTTAAATGATAATTTTCATTGACAGTTGATGGCTCTTCTACTATTGCGCCATGCATTACCAATGACAGATACAGATGGAGATGATGAAGATCCAACTGCTTTCTTTTCGGTTAGTTGACTAGCTGTGCACTCCATCTTTATATTTCTCTTTAAAAAGATTTCTTAACGGTGGATCTAACTCATCCATCTCTGCAGCTTTTCTTACTCCGGGCAGTTGGCTTTCTTTTACCCTGCTACATCATGCTCTGGGCCATCAGCATCTTGCAGCAGCGCAGACAAAGAGAGGTAGGTGTTAGTTTTGCTAGTCCTGCATCAGTGAATTGTTTTTGAGCTAGTGTGCTGACATGACGTGCACGTCTCTATTTTGCTACAACTGATGTAAAAAACGCGTATTCATTATTTGTTCGAGCAGGAAGCTGCAGCATTGGCAGCAACACAATTTGCAGTTGTGTTACACTCTGGACAGCCGAGAAGTGTACAGTTTACCATAGCTTCAGCTGCACCAGCAACACCAGCAGCGCCTGCTTCAGTGGATAATGTTTAAACAACAAGATGATCGTGCTTGATCTCTTATTTTGAAGCTAAATACTGCCTTATGCTAGATTTGTTTGTCTGTTATCATATTTCATATATTATTATATGGGGAAGTTCGAAAATGAATTGTTGTATTACCATTTTGCCCCCCTTTACTGTTTTAAAAATTTGATTAAATATAAATATTTTTAATTATATAATGGTAGAATTTGAAGTTCTTTTAAGTCTTTCGTGAAAAGTTGAATCACCATTTTGCTTCTCTGTTAAATTGAAGTTTGATTAAATATATATATTTTATAGTATAATGGTAGAAATTGAAGTTCTTAAGCCTTATAATAATTAAAATATCATGTCAAATTATATAGTATTTTCTTTAATAGCTTGAGATTGTGATGAAAATATGATTTTGACAGTAATTCATGCCTTTCACAGGACTCATGTGCAAAGCACAATTAGTCTCACTAAAAATAGGAAGCATCAAAGATGAAAAGTTGGAATCATCATTTTACTTTTAGGCTAAATTAAACATCTAATTAATTAAATAATATTATTTTAATTATTTTTTGACTTGTAATTTATTTATTAAAAAGGAAATGCGAAAGAATAAGAGTCAATTATGATTTCTAGAATTTTAAATAAATACATAAATCAAGGTTTCCTTCTTTTAATCTTAAATTAAATAATATGAAGAGTTGTAGCTAAACCAATATATATCATTACCAATTACGAATTTGTCATCTTTATTGCACTTTAATTCTTTAGTTATTTCCTTCTAATTAAGTTTTCTTAGTTGTAAATTTGAATTACTTAATAACATTCTACTTAATAAGAAGGAGAGTTTCATCTTCTACTAATTAATGTTAAAATATTTTATCTTTCTGAAATGTATAACTATTAATTTAATTTCAATATTTTTACTTTATTCTATAAGACAAAAGAGACACTTTAAGGACGTTAATCATAAGGTAGACTAGTGTGCCTCTATATTTGTTTTTGCTACTTTATTTTGTCTTTTAAAACAAATATAAATTATAATAAGGAGATGACTAAATACAAAAGAGATTCTTCTTACGAGTTAACCATAAACATTTTTTATTAACTAAAAATTACTTGATAATTTTATATTTTTTATTTTTTTTCTTAATAGGTATAAAAAGAGCTAAAACGACAGTTTAAATAAAACGTAAATATTTTCAAACATAGACAACTCCCAAACAAACTCAAGTAATATCACTATCAAATTTAGTAATCTTGTGGCTTACATTTCATTTAAAGGTTTTTGAGGGTTAAAAAGGAGTGGTAATTTTTAAGGATATGAGAATATAGAAAAGTTGTCCATGTTATAAGATCAATTTTTATATATTCAAATATGATGTTAAAGTAGAGCAAAGCATCTTCTTTAAACACTTATATATAGATATATATTTTTTGTAAACATTCTCTTTGCAGTGTCCCACTCTTTGTTTGTTCAAATTTTAAACTTTAACAAAAGATTATTAGTGTCTTTGAGCCCACTAATTATCTAAAGCTTGTTGTTTTCTAACATTAATTTATGTCTTAAAAATCATTTGCTATTTTTATGTCCTTGTCTTGCTTAGCAGATAAGGACTCTTTTCTGTTTTGATTAGATTTCTCTTCTATTATAACACACAAAAATAACGAATTCAAAATTTGAAATTAATCAAATTACATGGGGCTATGGAGTAAATTGCATGTATATTTTATTTTGATATCGTTATTTAATTTGTATTTTTATCTTTTAAAAAAATTTCACATATAGTTACTTCCGACAACTTCAGACATAAAGTGTTTGGAGTTGATTTTGACAAAGACTAACTTTAGAGTTTAGATATACGGTCCAGGTTTCAAACGTGTGAAGTTCAAACAAAATAATTGAACTTCAGTCATACAGGCCTGACGCTCAGACAAAAATGACTAAAGTTAATTTTTGTTGCTTGAACTTCACTCATATACAACTTTAGATATTTGATATTCTCAAGTCTTACTTCGGACGCTACATATTTGAAATGGGTATATATATAAAAAAAAATTAAAAATTGGATAGACATTGAATCTCTCTTGGTTTTTAGTTGGATGTACTTCGTCATAAGTTGAATTTTCTTATTGAAAATCTTGATTTCGCCACCTGATAACCGAAAAATACTATATCTGAATTAGAATATGGATCCAATCTTCTTCTTGTCCAAATAAGTAAAAGGTTCTTAAGGGCATAGGATGAAATCATGAAAGCCTCTTCAAGATTCTCAACTTTAAGACAAGAGTATATCTAATAAGTATGCCAACCTTAATTTAGAAAATGTGCACTAGAAGCAAATTAATAGGTCCCTCCCAACACATAAATAAACCTACTTTTATTACCACTATTTGATTACGTACGAAGTTTATAAGAATATAAAAAAAAAAAGACTTTTGAAGCTATATCGAATGATGCATATTGACGAAGTAAATTGTTTCCAATCGAAAGATCCTTCATTACTAATTTTGATTAAGAATATGACTTAGTGATTAATAGATGAATGATATCAAATACTTTATAAATATAAACGTGATGCATATAAATTAATCTGAATATCATGGTTATAAAAAAAAGTTTAAATATTTCAATCATTCTATCACAATCGGTGATGTATTATACAAAAAAGCTTTATCTACTATGACAAGACAAAAGGTAAAAGTGAGCAGAGGGAACCAATGAAAGTGAAAACATGTTGTATTTGTATACATTGGAAACACAATCCATTCTCCATAACACAAGTTCATGGAGCATTAAAACATGTACTTTAGAATGTTCCAACTTTGATGAGATTTACTAATATTTTATATCGATCGAAAATAAATCTAAATTATCATTTTTTTTGTGAATTTGACATATTAACTATTGATTGAGTTTATTTTTTTATTTGAATTATCACTGTTTATATATAAAAATGCATCTTGAAGCTGATTAGGCCAACTATTATTTGTTTCCTTTTTCTATCTGAACTATCACCATCTATTCAATTAGATGTATTCTAATACATAAACAATGTCAGTTTAAGCAAGAAAAAGAGAATAACTGATAATTAAAATATGATACTCATAATTTTTGATCATTATCTTTATTTTTTACAAAATAAAATTAAAGCAATATAAAGAAAAAGTTGGTCTTCCTGGTTTAACGAGAAAAAACAAAAACAATTTCAAATTTTAAGAGAAAGTGACACTTGAATTGGTTTATCTGAATATAAGAAATTAAACTAAAAATATAAAGACTAAAAAAGAAAAGCATAAAGAAACAGATTTCGCACAAGAAAC</genome_strand>
        <mrna_strand>GGAAGCTGAATATGATGATTACAATTCTGCAAATGCAAGTGGTGCAGCTTTCTTTCGATCGGCTGCTTTAATT..................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGCTCTTCTACTATTGCGCCATGCATTACCAATGACAGATACAGATGGAGATGATGAAGATCCAACTGCTTTCTTTTCG......................................................................................CTTTTCTTACTCCGGGCAGTTGGCTTTCTTTTACCCTGCTACATCATGCTATGGGCCATCAGCATCTTGCAGCAGCGCAGACAAAGAGAG...............................................................................................................................GAAGCTGCAGCATTGGCAGCAACACAATTTGCAGTTGTGTTACACTCTGGACAGCCGAGAAGTGTACAGTTTACCATAGCTTCAGATGCACCAGCAACACCAGCAGCGCCTGCTTCAGTGGATAATGTTTAAACAACAAGATGATCGTGCTTGATCTCTTATTTTGAAGCTAAATACTGCCTTATGCTAAATTTGTTTGTCTGTTATCATATTTCATATATTATTATATGGGGAAGTTCGAAAATGAATTGTTGTATTACCATTTTGCCCCCCTTTACTGTTTTAAAAATTTGATTAAATATAAATATTTTTAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252365" ref_strand="-" ref_description="SGN-E252365 [cLEG-12-K9]">
      <seq>ctactattgcgccatgcattaccaatgacagatacagatggagatgatgaagatccaactgctttcttttcgcttttcttactccgggcagttggctttcttttaccctgctacatcatgctttgggccatcagcatcttgcagcagcgcagacaaagagaggaagctgcagcattggcagcaacacaatttgcagttgtgttacactctggacagccgagaagtgtacagtttaccatagcttcagctgcaccagcaacaccagcagcgcttgcttcagtggataatgtttaaacaacaagatgatcgtgcttgatctcttattttgaagctaaatactgccttatgctagatttgtttgtctgttatcatatttcatatattattatatggggaagttcgaaaatgaattgttgtattaccattttgcccccctttactgttttaaaaatttgattaaatataaatatttttaattaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="5402" stop="61072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5702" g_stop="5773" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5774" i_stop="5859" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.237" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5860" g_stop="5949" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="162" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5950" i_stop="6076" i_length="127">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6077" g_stop="6392" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="478" r_length="316" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6393" i_stop="9469" i_length="3077">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.448" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9470" g_stop="9515" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="524" r_length="46" r_score="0.565"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E252365" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252365" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5702" e_stop="5773"/>
          <exon e_start="5860" e_stop="5949"/>
          <exon e_start="6077" e_stop="6392"/>
          <exon e_start="9470" e_stop="9515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTATTGCGCCATGCATTACCAATGACAGATACAGATGGAGATGATGAAGATCCAACTGCTTTCTTTTCGGTTAGTTGACTAGCTGTGCACTCCATCTTTATATTTCTCTTTAAAAAGATTTCTTAACGGTGGATCTAACTCATCCATCTCTGCAGCTTTTCTTACTCCGGGCAGTTGGCTTTCTTTTACCCTGCTACATCATGCTCTGGGCCATCAGCATCTTGCAGCAGCGCAGACAAAGAGAGGTAGGTGTTAGTTTTGCTAGTCCTGCATCAGTGAATTGTTTTTGAGCTAGTGTGCTGACATGACGTGCACGTCTCTATTTTGCTACAACTGATGTAAAAAACGCGTATTCATTATTTGTTCGAGCAGGAAGCTGCAGCATTGGCAGCAACACAATTTGCAGTTGTGTTACACTCTGGACAGCCGAGAAGTGTACAGTTTACCATAGCTTCAGCTGCACCAGCAACACCAGCAGCGCCTGCTTCAGTGGATAATGTTTAAACAACAAGATGATCGTGCTTGATCTCTTATTTTGAAGCTAAATACTGCCTTATGCTAGATTTGTTTGTCTGTTATCATATTTCATATATTATTATATGGGGAAGTTCGAAAATGAATTGTTGTATTACCATTTTGCCCCCCTTTACTGTTTTAAAAATTTGATTAAATATAAATATTTTTAATTATATAATGGTAGAATTTGAAGTTCTTTTAAGTCTTTCGTGAAAAGTTGAATCACCATTTTGCTTCTCTGTTAAATTGAAGTTTGATTAAATATATATATTTTATAGTATAATGGTAGAAATTGAAGTTCTTAAGCCTTATAATAATTAAAATATCATGTCAAATTATATAGTATTTTCTTTAATAGCTTGAGATTGTGATGAAAATATGATTTTGACAGTAATTCATGCCTTTCACAGGACTCATGTGCAAAGCACAATTAGTCTCACTAAAAATAGGAAGCATCAAAGATGAAAAGTTGGAATCATCATTTTACTTTTAGGCTAAATTAAACATCTAATTAATTAAATAATATTATTTTAATTATTTTTTGACTTGTAATTTATTTATTAAAAAGGAAATGCGAAAGAATAAGAGTCAATTATGATTTCTAGAATTTTAAATAAATACATAAATCAAGGTTTCCTTCTTTTAATCTTAAATTAAATAATATGAAGAGTTGTAGCTAAACCAATATATATCATTACCAATTACGAATTTGTCATCTTTATTGCACTTTAATTCTTTAGTTATTTCCTTCTAATTAAGTTTTCTTAGTTGTAAATTTGAATTACTTAATAACATTCTACTTAATAAGAAGGAGAGTTTCATCTTCTACTAATTAATGTTAAAATATTTTATCTTTCTGAAATGTATAACTATTAATTTAATTTCAATATTTTTACTTTATTCTATAAGACAAAAGAGACACTTTAAGGACGTTAATCATAAGGTAGACTAGTGTGCCTCTATATTTGTTTTTGCTACTTTATTTTGTCTTTTAAAACAAATATAAATTATAATAAGGAGATGACTAAATACAAAAGAGATTCTTCTTACGAGTTAACCATAAACATTTTTTATTAACTAAAAATTACTTGATAATTTTATATTTTTTATTTTTTTTCTTAATAGGTATAAAAAGAGCTAAAACGACAGTTTAAATAAAACGTAAATATTTTCAAACATAGACAACTCCCAAACAAACTCAAGTAATATCACTATCAAATTTAGTAATCTTGTGGCTTACATTTCATTTAAAGGTTTTTGAGGGTTAAAAAGGAGTGGTAATTTTTAAGGATATGAGAATATAGAAAAGTTGTCCATGTTATAAGATCAATTTTTATATATTCAAATATGATGTTAAAGTAGAGCAAAGCATCTTCTTTAAACACTTATATATAGATATATATTTTTTGTAAACATTCTCTTTGCAGTGTCCCACTCTTTGTTTGTTCAAATTTTAAACTTTAACAAAAGATTATTAGTGTCTTTGAGCCCACTAATTATCTAAAGCTTGTTGTTTTCTAACATTAATTTATGTCTTAAAAATCATTTGCTATTTTTATGTCCTTGTCTTGCTTAGCAGATAAGGACTCTTTTCTGTTTTGATTAGATTTCTCTTCTATTATAACACACAAAAATAACGAATTCAAAATTTGAAATTAATCAAATTACATGGGGCTATGGAGTAAATTGCATGTATATTTTATTTTGATATCGTTATTTAATTTGTATTTTTATCTTTTAAAAAAATTTCACATATAGTTACTTCCGACAACTTCAGACATAAAGTGTTTGGAGTTGATTTTGACAAAGACTAACTTTAGAGTTTAGATATACGGTCCAGGTTTCAAACGTGTGAAGTTCAAACAAAATAATTGAACTTCAGTCATACAGGCCTGACGCTCAGACAAAAATGACTAAAGTTAATTTTTGTTGCTTGAACTTCACTCATATACAACTTTAGATATTTGATATTCTCAAGTCTTACTTCGGACGCTACATATTTGAAATGGGTATATATATAAAAAAAAATTAAAAATTGGATAGACATTGAATCTCTCTTGGTTTTTAGTTGGATGTACTTCGTCATAAGTTGAATTTTCTTATTGAAAATCTTGATTTCGCCACCTGATAACCGAAAAATACTATATCTGAATTAGAATATGGATCCAATCTTCTTCTTGTCCAAATAAGTAAAAGGTTCTTAAGGGCATAGGATGAAATCATGAAAGCCTCTTCAAGATTCTCAACTTTAAGACAAGAGTATATCTAATAAGTATGCCAACCTTAATTTAGAAAATGTGCACTAGAAGCAAATTAATAGGTCCCTCCCAACACATAAATAAACCTACTTTTATTACCACTATTTGATTACGTACGAAGTTTATAAGAATATAAAAAAAAAAAGACTTTTGAAGCTATATCGAATGATGCATATTGACGAAGTAAATTGTTTCCAATCGAAAGATCCTTCATTACTAATTTTGATTAAGAATATGACTTAGTGATTAATAGATGAATGATATCAAATACTTTATAAATATAAACGTGATGCATATAAATTAATCTGAATATCATGGTTATAAAAAAAAGTTTAAATATTTCAATCATTCTATCACAATCGGTGATGTATTATACAAAAAAGCTTTATCTACTATGACAAGACAAAAGGTAAAAGTGAGCAGAGGGAACCAATGAAAGTGAAAACATGTTGTATTTGTATACATTGGAAACACAATCCATTCTCCATAACACAAGTTCATGGAGCATTAAAACATGTACTTTAGAATGTTCCAACTTTGATGAGATTTACTAATATTTTATATCGATCGAAAATAAATCTAAATTATCATTTTTTTTGTGAATTTGACATATTAACTATTGATTGAGTTTATTTTTTTATTTGAATTATCACTGTTTATATATAAAAATGCATCTTGAAGCTGATTAGGCCAACTATTATTTGTTTCCTTTTTCTATCTGAACTATCACCATCTATTCAATTAGATGTATTCTAATACATAAACAATGTCAGTTTAAGCAAGAAAAAGAGAATAACTGATAATTAAAATATGATACTCATAATTTTTGATCATTATCTTTATTTTTTACAAAATAAAATTAAAGCAATATAAAGAAAAAGTTGGTCTTCCTGGTTTAACGAGAAAAAACAAAAACAATTTCAAATTTTAAGAGAAAGTGACACTTGAATTGGTTTATCTGAATATAAGAAATTAAACTAAAAATATAAAGACTAAAAAAGAAAAGCATAAAGAAACAGATTTCGCACAAGAAACCA</genome_strand>
        <mrna_strand>CTACTATTGCGCCATGCATTACCAATGACAGATACAGATGGAGATGATGAAGATCCAACTGCTTTCTTTTCG......................................................................................CTTTTCTTACTCCGGGCAGTTGGCTTTCTTTTACCCTGCTACATCATGCTTTGGGCCATCAGCATCTTGCAGCAGCGCAGACAAAGAGAG...............................................................................................................................GAAGCTGCAGCATTGGCAGCAACACAATTTGCAGTTGTGTTACACTCTGGACAGCCGAGAAGTGTACAGTTTACCATAGCTTCAGCTGCACCAGCAACACCAGCAGCGCTTGCTTCAGTGGATAATGTTTAAACAACAAGATGATCGTGCTTGATCTCTTATTTTGAAGCTAAATACTGCCTTATGCTAGATTTGTTTGTCTGTTATCATATTTCATATATTATTATATGGGGAAGTTCGAAAATGAATTGTTGTATTACCATTTTGCCCCCCTTTACTGTTTTAAAAATTTGATTAAATATAAATATTTTTAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436571" ref_strand="-" ref_description="SGN-E436571 [STM-63-O5]">
      <seq>atcaagaatcatgattcagatgatgttactggaaggttactggaagctgtggggacataaggttctatctagtattttggacacaacaattatcttaattggttaaccagacgcgtcgatcagtctccatcaggtggctccatggctcggagcgtgtgcactgtgcatgctaagcattgagagagtttgagtatttgctgttcactcatataggggtgcttttatgattttgctgtaagttattacattttaactcttcaggtgaatgatttcattcattcccctcgtgttcttttatgaactaactaaactctgttatgttatagagctgaaattctgttccttcaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="13841" stop="9301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13701" g_stop="13683" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13682" i_stop="13536" i_length="147">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13535" g_stop="13208" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="340" r_length="321" r_score="0.902"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13207" i_stop="13022" i_length="186">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.204" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13021" g_stop="13008" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="354" r_length="14" r_score="0.571"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13007" i_stop="12506" i_length="502">
            <donor d_prob="0.216" d_score="0.00"/>
            <acceptor a_prob="0.870" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12505" g_stop="12490" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="370" r_length="16" r_score="0.688"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E436571" ref_strand="-">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436571" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13701" e_stop="13683"/>
          <exon e_start="13535" e_stop="13208"/>
          <exon e_start="13021" e_stop="13008"/>
          <exon e_start="12505" e_stop="12490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGACTCATAATTCAGGTACAGTATTAAGACAATACTACATTCAGTCTCATTCTTAAACTATGTTCAATGCATTTTCATAGCTATAAAAATTTGCCTCTTACTAACGTCTAACTATTACAATTTGGTTGTAATGACTACATCCACAAATTGTTGGTTTTGCAGATGGTGTTACTGGAAGGTAACTGTAAGCTGCGTGGACATAAGGTTCTATCTAGTATATATGTTGGACACAACAATTATCTTAATTGGTTTACCAGACACGTCGATCAGTCTCCATCAGGTGGCTCCATGGCTCGGAGCGTGTGAACTGTACATGCTAAGCATTGAGAGAGTATGGGTATTTTCTGTTCATTCGTATAGGTGTGCTTTTCTGATTTTTCTGTAAGTTATTACATTTTAAACTCTTTTTAGGTGAATGATTTCACTCATTCCCCTTGTGTTCTTTTATGAACTAACTAAATTCTGTTATGTTATTGAGCTGAGTTTTTGTGTTGAGAAGCTTAGATAGTTATATAACTGCTGTTTTTTCTTCAATTTCGCCTCCGTACCACCTATATGTGTTAGATTCTGGCATTTGCAAAGCATACAAAGAGTATGCGTGTTGGTTATATAAAATCATGAAATTCTGTTGATCGAAAAAAATTGCCTGAAATGTTGACCACTTTTATGTTTGAAGTCCGCGAACTCAAAGTACCACTGCTTCTACACTTACAGTAAGTAGCAAAGTGAAGGTATAGGTACACCCATTGTAGAAGCTTTTAGTTACTACTCCTACCTCAGCTTTAGTTTTCTCTGTTGAAACTAGTGTTTTCAAGTAGCTTCTTTTTACTGGAAAACCTCCACCTATACGAGCTCGTTCACATTGTTGGTCCCAAACCTGGATAAAGGAGGAAGGTTGTCGAGGGTCAATCACAAACAACCTTTCTATCCTATAAAGGTAGGGTAAGACCATACATCACTATATCTTACCCTCCACAGGCCCCACTTATGGGATTACACTCGGGTTTTTTGTTGTTGTTTTTACTGGAAAGGGTGAGAATCAACTACTCCACTGTACCGTTATTGACTGGTGAGAATCAACTACTCCACTGTACCTTTATTGACTGGTCCAATTGAAACAATTTGTTTATTTTTTTTTTGCATATGTATTTGAGTTTTGACAGATCTTATGCAAATTTATCAAAATATATAGCACAAAAGAAGCTTGA</genome_strand>
        <mrna_strand>ATCAAGAATCATGATTCAG...................................................................................................................................................ATGATGTTACTGGAAGGTTACTGGAAGCTGTGGGGACATAAGGTTCTATCTAG--TAT-T-TTGGACACAACAATTATCTTAATTGGTTAACCAGACGCGTCGATCAGTCTCCATCAGGTGGCTCCATGGCTCGGAGCGTGTGCACTGTGCATGCTAAGCATTGAGAGAGTTTGAGTATTTGCTGTTCACTCATATAGGGGTGCTTTTATGATTTTGCTGTAAGTTATTACATTTT-AACTC--TTCAGGTGAATGATTTCATTCATTCCCCTCGTGTTCTTTTATGAACTAACTAAACTCTGTTATGTTATAGAGCTGAAATTCTGT..........................................................................................................................................................................................TCCTTCAAAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353094" ref_strand="+" ref_description="SGN-E353094 [cTOS-14-F18]">
      <seq>gaacatgtagaatccctaccatatcttgtattcatctccgcgttgagtctcgagaaattgaaagtatcctactttatactgggctctcaacacttatcaaacatttctcagcttcggaaacttcaagaactcgaactgaattttgttgaatttgagggtgaaaaatgggaagtgagggaagacgagttcgttgaactcaaagttttgaaaatagtgaactgctccagttttagagaatggactgtctccgatgatgcattttctaaccttcaacacatgtttctgcgttgttgtcagtcacttgtggagatcccttcttggttcgcagaaattcattctctaaagtacattgaggtggataattgcaatggatctgttgttgaatcagccaggactatccaaaacacaaaagttgaagattatgatgttgatttggagctcgtcatcaagactcataattcagatggtgttactggaaggtaactgtaagctgcgtggacataaggttctatctagtatatatgttggacacaacaattatcttaattggtttaccagacacgtcgatcagtctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="14445" stop="13122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14145" g_stop="13683" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13682" i_stop="13536" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13535" g_stop="13422" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="577" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E353094" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14145" e_stop="13683"/>
          <exon e_start="13535" e_stop="13422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATGTAGAATCCCTACCATATCTTGTATTCATCTCCGCGTTGAGTCTCGAGAAATTGAAAGTATCCTACTTTATACTGGGCTCTCAACACTTATCAAACATTTCTCAGCTTCGGAAACTTCAAGAACTCGAACTGAATTTTGTTGAATTTGAGGGTGAAAAATGGGAAGTGAGGGAAGACGAGTTCGTTGAACTCAAAGTTTTGAAAATAGTGAACTGCTCCAGTTTTAGAGAATGGACTGTCTCCGATGATGCATTTTCTAACCTTCAACACATGTTTCTGCGTTGTTGTCAGTCACTTGTGGAGATCCCTTCTTGGTTCGCAGAAATTCATTCTCTAAAGTACATTGAGGTGGATAATTGCAATGGATCTGTTGTTGAATCAGCCAGGACTATCCAAAACACAAAAGTTGAAGATTATGATGTTGATTTGGAGCTCGTCATCAAGACTCATAATTCAGGTACAGTATTAAGACAATACTACATTCAGTCTCATTCTTAAACTATGTTCAATGCATTTTCATAGCTATAAAAATTTGCCTCTTACTAACGTCTAACTATTACAATTTGGTTGTAATGACTACATCCACAAATTGTTGGTTTTGCAGATGGTGTTACTGGAAGGTAACTGTAAGCTGCGTGGACATAAGGTTCTATCTAGTATATATGTTGGACACAACAATTATCTTAATTGGTTTACCAGACACGTCGATCAGTCTCCA</genome_strand>
        <mrna_strand>GAACATGTAGAATCCCTACCATATCTTGTATTCATCTCCGCGTTGAGTCTCGAGAAATTGAAAGTATCCTACTTTATACTGGGCTCTCAACACTTATCAAACATTTCTCAGCTTCGGAAACTTCAAGAACTCGAACTGAATTTTGTTGAATTTGAGGGTGAAAAATGGGAAGTGAGGGAAGACGAGTTCGTTGAACTCAAAGTTTTGAAAATAGTGAACTGCTCCAGTTTTAGAGAATGGACTGTCTCCGATGATGCATTTTCTAACCTTCAACACATGTTTCTGCGTTGTTGTCAGTCACTTGTGGAGATCCCTTCTTGGTTCGCAGAAATTCATTCTCTAAAGTACATTGAGGTGGATAATTGCAATGGATCTGTTGTTGAATCAGCCAGGACTATCCAAAACACAAAAGTTGAAGATTATGATGTTGATTTGGAGCTCGTCATCAAGACTCATAATTCAG...................................................................................................................................................ATGGTGTTACTGGAAGGTAACTGTAAGCTGCGTGGACATAAGGTTCTATCTAGTATATATGTTGGACACAACAATTATCTTAATTGGTTTACCAGACACGTCGATCAGTCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436570" ref_strand="+" ref_description="SGN-E436570 [STM-63-O5]">
      <seq>attctccttgatgacgtaccaaatgctaggtcgtgggatgatttagaatcttgcttctatgatgccagtaatggaagtagaattcttctaacaacccgacactctaatgttgccgactatgctaatagatcaattagtgaacccctacatcttcgcgtgcttaatgatggtgaaagttggacattactgaaaaagaaagtatttgatgatggattctgctcccctccatttgaaagagttgggacaaagatagtacgaaagtgtggagggcttcctctttcaattgtttttgtggcctctatactcgctggggtggagaggacggaacaatcttggaagcaagtggctaggagattaagaactgaaattcgcttttacccggagaacattataaaacaaagttatcagaacttgccgtatcatttaaagtcatgctttctttactttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="15890" stop="14844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15590" g_stop="15144" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E436570" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15590" e_stop="15144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTCCTTGATGACATACCAAATGATAGCGCGTGGGATGATTTGGAATCTTGCTTCTATGATGCCAATAATGGAAGTAGAATTCTTCTAACAACGCGAAACTCTAATGTTGCCTACTATGC---TAGATCAATTAGTCAACCCCTATATCTTCGCATGCTGAATGATGGTGAAAGTTGGACATTACTAAAAAAGAAAGTATTTGGTGAAGGATTCTGCTCCCCTCTCTTTGAAAAAGTTGGGCCCAAGATAGTACGAAAGTGTGGGGGGCTGCCTCTTTCAATTGTTTTTGTGGCCTCTATACTAGCTGGGATGGAGAGGACGGAACAATGTTGGAAGCAAGTGGCTAGGAGTTTAGGTACTGAAATAAGCTGTTACCCGGAGAACATTATAGAACAAAGTTATCAGAACTTGCCGTATCATTTAAAGTCCTGCTTTCTTTACTTTGGA</genome_strand>
        <mrna_strand>ATTCTCCTTGATGACGTACCAAATGCTAGGTCGTGGGATGATTTAGAATCTTGCTTCTATGATGCCAGTAATGGAAGTAGAATTCTTCTAACAACCCGACACTCTAATGTTGCCGACTATGCTAATAGATCAATTAGTGAACCCCTACATCTTCGCGTGCTTAATGATGGTGAAAGTTGGACATTACTGAAAAAGAAAGTATTTGATGATGGATTCTGCTCCCCTCCATTTGAAAGAGTTGGGACAAAGATAGTACGAAAGTGTGGAGGGCTTCCTCTTTCAATTGTTTTTGTGGCCTCTATACTCGCTGGGGTGGAGAGGACGGAACAATCTTGGAAGCAAGTGGCTAGGAGATTAAGAACTGAAATTCGCTTTTACCCGGAGAACATTATAAAACAAAGTTATCAGAACTTGCCGTATCATTTAAAGTCATGCTTTCTTTACTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542031" ref_strand="+" ref_description="SGN-E542031 [TUS-63-C3](-)">
      <seq>tttagcaaacttataaagcttgaaatgctcaagatttcttctggtgancaattgacctggatcaatgatttgaacatcccaagaaacttgaagaagttgacactgtcctatttccggatagatcttaatgaagtcgcaaccctttcaaatcttgaggtactcaagctgctagaagttaccattagatccaatgtatgggaagtgaacgatgagcagttccttcgactcagaatcttgaaactagaaaatccttctttttcaagatggtatgcctcagatgatgcctttccatgccttgaacgcttggaactgaaaagatgccagcacctcaagaacatcccttattgttttgagcattcttcgtccctgaaatcgcttaagattatatcctgcaatgacatgcttgccaattcagtcatgcaaaccaaagaatcatcaaagtatttgcacggagcttctggtttcgaggtcttcatccactagtataacagtaacaactcaactctcaaattggttatcaggtgagtctcgagctatttggagctaaaccatagttaaacgagcagggaaacgaccaaaccaaggaaataaatattctgaagtgtattcaatgatctgttcatgattaactaataattggaaattattatgcgatgattggactatgaaacgatattcatagtaaaaattattatgcaatgatttgttctatgttgatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="25514" stop="24046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25214" g_stop="24694" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24693" i_stop="24547" i_length="147">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24546" g_stop="24346" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="722" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E542031" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25214" e_stop="24694"/>
          <exon e_start="24546" e_stop="24346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGCAAACTTAATAAGCTTGAAATGCTCAAGATTTCTTCTGGTGAACAATTGACCTGGATCAATGATTTGAACATCCCAAGAAACTTGAAGAAGTTGACACTGTCCTATTTCCGGATAGATCTTAATGAAGTCGCAACCCTTTCAAATCTTGAGGTACTCAAGCTGCTAGAAGTTACCATTAGATCCAATGTATGGGAAGTGAACGATGAGCAGTTCCTTCGACTCAGAATCTTGAAACTAGAAAATCCTTCTTTTTCAAGATGGTATGCCTCAGATGATGCCTTTCCATGCCTTGAACGCTTGGAACTGAAAAGATGCCAGCACCTCAAGAACATCCCTTATTGTTTTGAGCATTCTTCGTCCCTGAAATCGCTTAAGATTATATCCTGCAATGACATGCTTGCCAATTCAGTCATGCAAACCAAAGAATCATCAAAGTATTTGCACGGAGCTTCTGGTTTCGAGGTCTTCATCCACTAGTATAACAGTAACAACTCAACTCTCAAATTGGTTATCAGGTATGCCGTTGAACCAATGCAACTGAAGTTAAATGCTTTTCTCAAATTAATTGACTTCGTATATTCAATATTCATGACAGAATACTGGTGGTTGCACCAAACGAAGTATATTTAATTTAGTGATTCTGCTTATATTTTGATGAGCAGGTGAGTCTCGAGCTATTTGGAGCTAAACCATAGTTAAACGAGCAGGGAAACGACCAAACCAAGGAAATAAATATTCTGAAGTGTATTCAATGATCTGTTCATGATTAACTAATAATTGGAAATTATTATGCGATGATTGGACTATGAAACGATATTCATAGTAAAAATTATTATGCAATGATTTGTTCTATGTTGATCAAA</genome_strand>
        <mrna_strand>TTTAGCAAACTTATAAAGCTTGAAATGCTCAAGATTTCTTCTGGTGANCAATTGACCTGGATCAATGATTTGAACATCCCAAGAAACTTGAAGAAGTTGACACTGTCCTATTTCCGGATAGATCTTAATGAAGTCGCAACCCTTTCAAATCTTGAGGTACTCAAGCTGCTAGAAGTTACCATTAGATCCAATGTATGGGAAGTGAACGATGAGCAGTTCCTTCGACTCAGAATCTTGAAACTAGAAAATCCTTCTTTTTCAAGATGGTATGCCTCAGATGATGCCTTTCCATGCCTTGAACGCTTGGAACTGAAAAGATGCCAGCACCTCAAGAACATCCCTTATTGTTTTGAGCATTCTTCGTCCCTGAAATCGCTTAAGATTATATCCTGCAATGACATGCTTGCCAATTCAGTCATGCAAACCAAAGAATCATCAAAGTATTTGCACGGAGCTTCTGGTTTCGAGGTCTTCATCCACTAGTATAACAGTAACAACTCAACTCTCAAATTGGTTATCAG...................................................................................................................................................GTGAGTCTCGAGCTATTTGGAGCTAAACCATAGTTAAACGAGCAGGGAAACGACCAAACCAAGGAAATAAATATTCTGAAGTGTATTCAATGATCTGTTCATGATTAACTAATAATTGGAAATTATTATGCGATGATTGGACTATGAAACGATATTCATAGTAAAAATTATTATGCAATGATTTGTTCTATGTTGATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542033" ref_strand="+" ref_description="SGN-E542033 [TUS-63-C3]">
      <seq>ttggttttagaggatgttggaagaagcatagcacaaaagtgtcaagggctgcccctatcaattgttctggtagcaggtgttcttgcaaggatgccgaaggaaagacatcgctgggaacaagtggcaaccaaattaagtgtagatattcaggctcactttgaacgtaccatggaacttagctattggtatttaccacatcatttgagaaaatgcttattatatcttgcagtattttcggagggcagagagattcaagtctcaaagttaacatggttatggatatcagaaggttttgtgaaaactcactcggagaggcttccggaggatattgcagatgattacatggagaatcttgttgagagaaacctagtgatggtttctaaaagaagttttgatggtaagatcaaggcatgtcatattcatgatctgttgcttgaattttgcaggaagaaagccgagttggagagtttcgcacagaggataaaaggggacatatttgacctttatcgaaagaccaggacttcatggcgtttttcccttcattctcggtgtgataatcttacattgtgttcgtatttctctaatctgaagtctttccaattcagggaggttagaaatactgcattctcttcgatagatcatgcatcagacatttttaaaaggttcagctttctgaaggtgttagattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="26673" stop="25300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26373" g_stop="25886" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25885" i_stop="25804" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25803" g_stop="25600" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="692" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E542033" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26373" e_stop="25886"/>
          <exon e_start="25803" e_stop="25600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTTTAGAGGATGTTGGAAGAAGCATAGCACAAAAGTGTCAAGGGCTGCCCCTATCAATTGTTCTGGTAGCAGGTGTTCTTGCAAGGATGCCGAAGGAAAGACATCGCTGGGAACAAGTGGCAACCAAATTAAGTGTAGATATTCAGGCTCACTTTGAACGTACCATGGAACTTAGCTATTGGTATTTACCACATCATTTGAGAAAATGCTTATTATATCTTGCAGTATTTTCGGAGGGCAGAGAGATTCAAGTCTCAAAGTTAACATGGTTATGGATATCAGAAGGTTTTGTGAAAACTCACTCGGAGAGGCTTCCGGAGGATATTGCAGATGATTACATGGAGAATCTTGTTGAGAGAAACCTAGTGATGGTTTCTAAAAGAAGTTTTGATGGTAAGATCAAGGCATGTCATATTCATGATCTGTTGCTTGAATTTTGCAGGAAGAAAGCCGAGTTGGAGAGTTTCGCACAGAGGATAAAAGGGTAATTAAAACCTTTGTTGTTTTTCTTGAATCAGTCATTCTTTTGGAAATTACATTAATTATACCAATTTCTCCACTTGCAGGGACATATTTGACCTTTATCGAAAGACCAGGACTTCATGGCGTTTTTCCCTTCATTCTCGGTGTGATAATCTTACATTGTGTTCGTATTTCTCTAATCTGAAGTCTTTCCAATTCAGGGAGGTTAGAAATACTGCATTCTCTTCGATAGATCATGCATCAGACATTTTTAAAAGGTTCAGCTTTCTGAAGGTGTTAGATTTTGA</genome_strand>
        <mrna_strand>TTGGTTTTAGAGGATGTTGGAAGAAGCATAGCACAAAAGTGTCAAGGGCTGCCCCTATCAATTGTTCTGGTAGCAGGTGTTCTTGCAAGGATGCCGAAGGAAAGACATCGCTGGGAACAAGTGGCAACCAAATTAAGTGTAGATATTCAGGCTCACTTTGAACGTACCATGGAACTTAGCTATTGGTATTTACCACATCATTTGAGAAAATGCTTATTATATCTTGCAGTATTTTCGGAGGGCAGAGAGATTCAAGTCTCAAAGTTAACATGGTTATGGATATCAGAAGGTTTTGTGAAAACTCACTCGGAGAGGCTTCCGGAGGATATTGCAGATGATTACATGGAGAATCTTGTTGAGAGAAACCTAGTGATGGTTTCTAAAAGAAGTTTTGATGGTAAGATCAAGGCATGTCATATTCATGATCTGTTGCTTGAATTTTGCAGGAAGAAAGCCGAGTTGGAGAGTTTCGCACAGAGGATAAAAGG..................................................................................GGACATATTTGACCTTTATCGAAAGACCAGGACTTCATGGCGTTTTTCCCTTCATTCTCGGTGTGATAATCTTACATTGTGTTCGTATTTCTCTAATCTGAAGTCTTTCCAATTCAGGGAGGTTAGAAATACTGCATTCTCTTCGATAGATCATGCATCAGACATTTTTAAAAGGTTCAGCTTTCTGAAGGTGTTAGATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298215" ref_strand="+" ref_description="SGN-E298215 [cLEW-9-E12]">
      <seq>tggttttagaggatgttgtaagaagcatagcacaaaagtgtcaagggctgcccctatcaattgttctggtagcaggtgttcttgcaaggatgccgaaggaaagacatcgctgggaacaagtggcaaccaaattaagtgtagatattcaggctcactttgaacgtaccatggaacttagctattggtatttaccacatcatttgagaaaatgcttattatatcttgcagtattttcggagggcagagagattcaagtctcaaagttaacatggttatggatatcagaaggttttgtgaaaactcactctgagaggcttccggaggatattgcagatgattacatggagaatcttgttgagagaaacctagtgatggtttctaaaagaagttttgatggtcagatcaaggcatgtcatattcatgatctgttgcttgaattttgcaggaagaaagccgagttggagagtttcgcacagaggataaaaggggacatatttgaccttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="26672" stop="25581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26372" g_stop="25886" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25885" i_stop="25804" i_length="82">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25803" g_stop="25786" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="505" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E298215" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26372" e_stop="25886"/>
          <exon e_start="25803" e_stop="25786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTAGAGGATGTTGGAAGAAGCATAGCACAAAAGTGTCAAGGGCTGCCCCTATCAATTGTTCTGGTAGCAGGTGTTCTTGCAAGGATGCCGAAGGAAAGACATCGCTGGGAACAAGTGGCAACCAAATTAAGTGTAGATATTCAGGCTCACTTTGAACGTACCATGGAACTTAGCTATTGGTATTTACCACATCATTTGAGAAAATGCTTATTATATCTTGCAGTATTTTCGGAGGGCAGAGAGATTCAAGTCTCAAAGTTAACATGGTTATGGATATCAGAAGGTTTTGTGAAAACTCACTCGGAGAGGCTTCCGGAGGATATTGCAGATGATTACATGGAGAATCTTGTTGAGAGAAACCTAGTGATGGTTTCTAAAAGAAGTTTTGATGGTAAGATCAAGGCATGTCATATTCATGATCTGTTGCTTGAATTTTGCAGGAAGAAAGCCGAGTTGGAGAGTTTCGCACAGAGGATAAAAGGGTAATTAAAACCTTTGTTGTTTTTCTTGAATCAGTCATTCTTTTGGAAATTACATTAATTATACCAATTTCTCCACTTGCAGGGACATATTTGACCTTTA</genome_strand>
        <mrna_strand>TGGTTTTAGAGGATGTTGTAAGAAGCATAGCACAAAAGTGTCAAGGGCTGCCCCTATCAATTGTTCTGGTAGCAGGTGTTCTTGCAAGGATGCCGAAGGAAAGACATCGCTGGGAACAAGTGGCAACCAAATTAAGTGTAGATATTCAGGCTCACTTTGAACGTACCATGGAACTTAGCTATTGGTATTTACCACATCATTTGAGAAAATGCTTATTATATCTTGCAGTATTTTCGGAGGGCAGAGAGATTCAAGTCTCAAAGTTAACATGGTTATGGATATCAGAAGGTTTTGTGAAAACTCACTCTGAGAGGCTTCCGGAGGATATTGCAGATGATTACATGGAGAATCTTGTTGAGAGAAACCTAGTGATGGTTTCTAAAAGAAGTTTTGATGGTCAGATCAAGGCATGTCATATTCATGATCTGTTGCTTGAATTTTGCAGGAAGAAAGCCGAGTTGGAGAGTTTCGCACAGAGGATAAAAGG..................................................................................GGACATATTTGACCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305169" ref_strand="+" ref_description="SGN-E305169 [cLEY-18-P15]">
      <seq>aaatggtccatcaaccaccgcaaagaccattttcgaaacttaaagggcccccgagttctcacaccacgacctcaccatagcccgaatcaacaacggcagtttcgggtcatgcccgaaatccataatctccgctcaacaacaatggcagcttcaattccttcaacaacccgattacttctacttcaacaccttgaaaccctcgatgcttaaatcccgtgccttagtaaaatccttagtcaacgccgccgacgtcgaggaaatctccatcgtcgataacaccacaaccgccgccgcaatcgttctccaatacataacctggtctttcttcacctccgatttccgtccccgcgacgccgccgttatgctccactacgcttatggctccgttaaaagttcagttcaagcgtacgttgcacgagctggaggaaaggtaattgaggtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="36253" stop="37296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36553" g_stop="36996" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E305169" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36553" e_stop="36996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGTCCATCAACCACCGCAAAAGCCATCACCGAAACCGAAATCGCGGCGGAGTTCTCACACCACGACCTCACCATAGCCCGAATCAACAACGGCAGTTTCGGGTCATGCCCGAAATCCATAATCTCCGCTCAACAACAATGGCAGCTTCAATTCCTTCAACAACCCGATTACTTCTACTTCAACACCTTGAAACCCTCGATGCTTAAATCCCGTGCCTTAGTAAAATCCTTAGTCAACGCCGCCGACGTCGAGGAAATCTCCATCGTCGATAACGCCACAACCGCCGCCGCAATCGTTCTCCAATACATAACCTGGTCTTTCTTCACCTCCGATTTCCGTCCCGGCGACGCCGCCGTTATGCTCCACTACGCTTATGGCTCCGTTAAAAGTTCAGTTCAGGCGTACGTTGCACGAGCTGGAGGAAAGGTAATTGAGGTACA</genome_strand>
        <mrna_strand>AAATGGTCCATCAACCACCGCAAAGACCATTTTCGAAACTTAAAGGGCCCCCGAGTTCTCACACCACGACCTCACCATAGCCCGAATCAACAACGGCAGTTTCGGGTCATGCCCGAAATCCATAATCTCCGCTCAACAACAATGGCAGCTTCAATTCCTTCAACAACCCGATTACTTCTACTTCAACACCTTGAAACCCTCGATGCTTAAATCCCGTGCCTTAGTAAAATCCTTAGTCAACGCCGCCGACGTCGAGGAAATCTCCATCGTCGATAACACCACAACCGCCGCCGCAATCGTTCTCCAATACATAACCTGGTCTTTCTTCACCTCCGATTTCCGTCCCCGCGACGCCGCCGTTATGCTCCACTACGCTTATGGCTCCGTTAAAAGTTCAGTTCAAGCGTACGTTGCACGAGCTGGAGGAAAGGTAATTGAGGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267821" ref_strand="+" ref_description="SGN-E267821 [cLEI-12-I1]">
      <seq>ccgaatcaacaacggcagtttcgggtcatgcccgaaatccataatctccgctcaacaacaatggcagcttcaattccttcaacaacccgattacttctacttcaacaccttgaaaccctcgatgcttaaatcccgtgccttagtaaaatccttagtcaacgccgccgacgtcgaggaaatctccatcgtcgataacgccacaaccgccgccgcaatcgttctccaatacataacctggtctttcttcacctccgatttccgtcccggcgacgccgccgttatgctccactacgcttatggctccgttaaaagttcagttcaggcgtacgttgcacgagctggaggaaaggtaattgaggtacatttaccttttccgttgaattcgaatgaagaaattgttactgaatttgataaagctcttaaaatggggaaaatgaatgggggaaaaattagattagctgtgattgatcatattacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="36334" stop="37414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36634" g_stop="37114" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E267821" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36634" e_stop="37114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAATCAACAACGGCAGTTTCGGGTCATGCCCGAAATCCATAATCTCCGCTCAACAACAATGGCAGCTTCAATTCCTTCAACAACCCGATTACTTCTACTTCAACACCTTGAAACCCTCGATGCTTAAATCCCGTGCCTTAGTAAAATCCTTAGTCAACGCCGCCGACGTCGAGGAAATCTCCATCGTCGATAACGCCACAACCGCCGCCGCAATCGTTCTCCAATACATAACCTGGTCTTTCTTCACCTCCGATTTCCGTCCCGGCGACGCCGCCGTTATGCTCCACTACGCTTATGGCTCCGTTAAAAGTTCAGTTCAGGCGTACGTTGCACGAGCTGGAGGAAAGGTAATTGAGGTACATTTACCTTTTCCGTTGAATTCGAATGAAGAAATTGTTACTGAATTTGATAAAGCTCTTAAAATGGGGAAAATGAATGGGGGAAAAATTAGATTAGCTGTGATTGATCATATTACTTCA</genome_strand>
        <mrna_strand>CCGAATCAACAACGGCAGTTTCGGGTCATGCCCGAAATCCATAATCTCCGCTCAACAACAATGGCAGCTTCAATTCCTTCAACAACCCGATTACTTCTACTTCAACACCTTGAAACCCTCGATGCTTAAATCCCGTGCCTTAGTAAAATCCTTAGTCAACGCCGCCGACGTCGAGGAAATCTCCATCGTCGATAACGCCACAACCGCCGCCGCAATCGTTCTCCAATACATAACCTGGTCTTTCTTCACCTCCGATTTCCGTCCCGGCGACGCCGCCGTTATGCTCCACTACGCTTATGGCTCCGTTAAAAGTTCAGTTCAGGCGTACGTTGCACGAGCTGGAGGAAAGGTAATTGAGGTACATTTACCTTTTCCGTTGAATTCGAATGAAGAAATTGTTACTGAATTTGATAAAGCTCTTAAAATGGGGAAAATGAATGGGGGAAAAATTAGATTAGCTGTGATTGATCATATTACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736950" ref_strand="+" ref_description="SGN-E736950 [LC07DF07]">
      <seq>cctattaatactatatttgtgttctctttttctttacttgtacacatgggaaaatcatgagtcccaagaaaatctttttgctcaaaagccactttaataaaaatgtttttgagtcaatttatgtgcagaacaatgacttggtttttcacttctatttggggtttcttgtgttggtttgtttccaagatttgctttttcttagagaacaggagggttgttgatgaaaatgatgaaatggactgtaaaaatcggaaaagattagattttgatgagaagggtgtggaaaaagagagttcttttttggttcagagtaagtatgagtatatatctggtaaagattcttttggttttatagagaaatcagaagctaaaagttttttagttgaagaaatgtttgtgaattttaatgaaggagaaggggttgtagaaaaagagattgataaaaattctgatgataaattgttttatttctcttttttcaaaaatggaagtgtttatcaagaaaaatcagagctttttgatgaaaaaaatgctaatgatcaagaaaagttggaatttttagatgaaaagggagataatctttgttttgaggagattttgaggaaaaatgatgaagtttttagtgatattgaaacacgggattcagaggatatgtgttatgaaattcaattgcttcctgagaatgagtctttaattcgaaattccattccagggtctgagggtcttggaaaagaattatgttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="56216" stop="57644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56514" g_stop="56722" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56723" i_stop="56808" i_length="86">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56809" g_stop="57344" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="745" r_length="536" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E736950" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56514" e_stop="56722"/>
          <exon e_start="56809" e_stop="57344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAGAATACTATATTTGTGTTCTCTTTTTCTTTACTTGTATACATGGGAAAATCATGAGTCCCAAGAAAATCTTTTTGCTCAAAAGCCACTTTAATAAAAATGTTTTTGAGTCAATTTATGTGCAGAACAATGACTTGGTTTTTCACTTCTATTTGGGGTTTCTTGTGTTGGTTTGTTTCCAAGATTTGCTTTTTCTTAGAGAACAGGTATGATTATATGAATCTTTTTTCTTTTTTTTTGAAGTTTTAGTTTTTTATTTGCTTAAAGTTTGTATCTTTTTTGATTTTTGTAGGAGGGTTGTTGATGAAAATGATGAAATGGACTGTAAAAATCGGAAAAGATTAGATTTTGATGAGAAGGGTGTGGAAAAAGAGAGTTCTTTTTTGGTTCAGAGTAAGTATGAGTATATATCTGGTAAAGATTCTTTTGGTTTTATAGAGAAATCAGAAGCTAAAAGTTTTTTAGTTGAAGAAATGTTTGTGAATTTTAATGAAGGAGAAGGGGTTGTAGAAAAAGAGATTGATAAAAATTCTGATGATAAATTGTTTTATTTCTCTTTTTTCAAAAATGGAAGTGTTTATCAAGAAAAATCAGAGCTTTTTGATGAAAAAAATGCTAATGATCAAGAAAAGTTGGAATTTTTAGATGAAAAGGGAGATAATCTTTGTTTTGAGGAGATTTTGAGGAAAAATGATGAAGTTTTTAGTGATATTGAAACACGGGATTCAGAGGATATGTGTTATGAAATTCAATTGCTTCCTGAGAATGAGTCTTTAATTCGAAATTCGATTCGAGGGTCTGAGGGTCTTGGAGATGAATTATGTTCTA</genome_strand>
        <mrna_strand>CCTATTAATACTATATTTGTGTTCTCTTTTTCTTTACTTGTACACATGGGAAAATCATGAGTCCCAAGAAAATCTTTTTGCTCAAAAGCCACTTTAATAAAAATGTTTTTGAGTCAATTTATGTGCAGAACAATGACTTGGTTTTTCACTTCTATTTGGGGTTTCTTGTGTTGGTTTGTTTCCAAGATTTGCTTTTTCTTAGAGAACAG......................................................................................GAGGGTTGTTGATGAAAATGATGAAATGGACTGTAAAAATCGGAAAAGATTAGATTTTGATGAGAAGGGTGTGGAAAAAGAGAGTTCTTTTTTGGTTCAGAGTAAGTATGAGTATATATCTGGTAAAGATTCTTTTGGTTTTATAGAGAAATCAGAAGCTAAAAGTTTTTTAGTTGAAGAAATGTTTGTGAATTTTAATGAAGGAGAAGGGGTTGTAGAAAAAGAGATTGATAAAAATTCTGATGATAAATTGTTTTATTTCTCTTTTTTCAAAAATGGAAGTGTTTATCAAGAAAAATCAGAGCTTTTTGATGAAAAAAATGCTAATGATCAAGAAAAGTTGGAATTTTTAGATGAAAAGGGAGATAATCTTTGTTTTGAGGAGATTTTGAGGAAAAATGATGAAGTTTTTAGTGATATTGAAACACGGGATTCAGAGGATATGTGTTATGAAATTCAATTGCTTCCTGAGAATGAGTCTTTAATTCGAAATTCCATTCCAGGGTCTGAGGGTCTTGGAAAAGAATTATGTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395334" ref_strand="+" ref_description="SGN-E395334 [TUS-16-B3]">
      <seq>attcgagtcgaaaatcatgggatatcgatgattttgcttctcaaaatgttgacagagtagaggaaacagatgtgaatggtgaggaaatgaagttaatggatgatattcaagaatcaccagatcataattcgagtcgaaactcattgtacatggatggttttgcttctcaaaatgttgacggagttgaagaaacaaatgtgaactatgaggacttgaagttaatggatgattttcaagattctccgaatcataattcgagtcgaaaatcatgggatacagatggttttgcttctcaaaatgttgacagagttgaggaaacagatgtgaactatgaggaaatggatgattttcaagattctccaaatcatcattcgaatcgaaaatcatgggaaatggatggttttgcttctcaaaatgttgatatagttgaggaaacagatgtgaactatgaggaaatggatgattttcaagaatcaccagatcataattcgagtcgaaaattatgggatactgattcagattcggatgacgatgatgatatcttgttagaacatcagaatttagtcaggcaaatgaaaatggaaatgaaaaattcaagaatcacaggtctgcctactatatcagaagattatgaatctcctaaagtagtagaagatatgaagccattgaaaattgatgaaaaaatgggatacaaatattgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="57270" stop="58572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57570" g_stop="58272" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E395334" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57570" e_stop="58272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGAGTCGAAAATCATGGGATATCGATGATTTTGCTTCTCAAAATGTTGACAGAGTAGAGGAAACAGATGTGAATGGTGAGGAAATGAAGTTAATGGATGATATTCAAGAATCACCAGATCATAATTCGAGTCGAAACTCATTGTACATGGATGGTTTTGCTTCTCAAAATGTTGACGGAGTTGAAGAAACAAATGTGAACTATGAGGACTTGAAGTTAATGGATGATTTTCAAGATTCTCCGAATCATAATTCGAGTCGAAAATCATGGGATACAGATGGTTTTGCTTCTCAAAATGTTGACAGAGTTGAGGAAACAGATGTGAACTATGAGGAAATGGATGATTTTCAAGATTCTCCAAATCATCATTCGAATCGAAAATCATGGGAAATGGATGGTTTTGCTTCTCAAAATGTTGATATAGTTGAGGAAACAGATGTGAACTATGAGGAAATGGATGATTTTCAAGAATCACCAGATCATAATTCGAGTCGAAAATTATGGGATACTGATTCAGATTCGGATGACGATGATGATATCTTGTTAGAACATCAGAATTTAGTCAGGCAAATGAAAATGGAAATGAAAAATTCAAGAATCACAGGTCTGCCTACTATATCAGAAGATTATGAATCTCCTAAAGTAGTAGAAGATATGAAGCCATTGAAAATTGATGAAAAAATTGGATACAAATATTGTAT</genome_strand>
        <mrna_strand>ATTCGAGTCGAAAATCATGGGATATCGATGATTTTGCTTCTCAAAATGTTGACAGAGTAGAGGAAACAGATGTGAATGGTGAGGAAATGAAGTTAATGGATGATATTCAAGAATCACCAGATCATAATTCGAGTCGAAACTCATTGTACATGGATGGTTTTGCTTCTCAAAATGTTGACGGAGTTGAAGAAACAAATGTGAACTATGAGGACTTGAAGTTAATGGATGATTTTCAAGATTCTCCGAATCATAATTCGAGTCGAAAATCATGGGATACAGATGGTTTTGCTTCTCAAAATGTTGACAGAGTTGAGGAAACAGATGTGAACTATGAGGAAATGGATGATTTTCAAGATTCTCCAAATCATCATTCGAATCGAAAATCATGGGAAATGGATGGTTTTGCTTCTCAAAATGTTGATATAGTTGAGGAAACAGATGTGAACTATGAGGAAATGGATGATTTTCAAGAATCACCAGATCATAATTCGAGTCGAAAATTATGGGATACTGATTCAGATTCGGATGACGATGATGATATCTTGTTAGAACATCAGAATTTAGTCAGGCAAATGAAAATGGAAATGAAAAATTCAAGAATCACAGGTCTGCCTACTATATCAGAAGATTATGAATCTCCTAAAGTAGTAGAAGATATGAAGCCATTGAAAATTGATGAAAAAATGGGATACAAATATTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204931" ref_strand="+" ref_description="SGN-E204931 [cLEC-16-E13]">
      <seq>ttcgagtcgaaaatcatgggatatcgatgattttgcttctcaaaatgttgacagagtagaggaaacagatgtgaatggtgaggaaatgaagttaatggatgatattcaagaatcaccagatcataattcgagtcgaaactcattgtacatggatggttttgcttctcaaaatgttgacggagttgaagaaacaaatgtgaactatgaggacttgaagttaatggatgattttcaagattctccgaatcataattcgagtcgaaaatcatgggatacagatggttttgcttctcaaaatgttgacagagttgaggaaacagatgtgaactatgaggaaatggatgattttcaagattctccaaatcatcattcgaatcgaaaatcatgggaaatggatggttttgcttctcaaaatgttgatatagttgaggaaacagatgtgaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="57271" stop="58317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57571" g_stop="58017" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E204931" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57571" e_stop="58017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAGTCGAAAATCATGGGATATCGATGATTTTGCTTCTCAAAATGTTGACAGAGTAGAGGAAACAGATGTGAATGGTGAGGAAATGAAGTTAATGGATGATATTCAAGAATCACCAGATCATAATTCGAGTCGAAACTCATTGTACATGGATGGTTTTGCTTCTCAAAATGTTGACGGAGTTGAAGAAACAAATGTGAACTATGAGGACTTGAAGTTAATGGATGATTTTCAAGATTCTCCGAATCATAATTCGAGTCGAAAATCATGGGATACAGATGGTTTTGCTTCTCAAAATGTTGACAGAGTTGAGGAAACAGATGTGAACTATGAGGAAATGGATGATTTTCAAGATTCTCCAAATCATCATTCGAATCGAAAATCATGGGAAATGGATGGTTTTGCTTCTCAAAATGTTGATATAGTTGAGGAAACAGATGTGAACTA</genome_strand>
        <mrna_strand>TTCGAGTCGAAAATCATGGGATATCGATGATTTTGCTTCTCAAAATGTTGACAGAGTAGAGGAAACAGATGTGAATGGTGAGGAAATGAAGTTAATGGATGATATTCAAGAATCACCAGATCATAATTCGAGTCGAAACTCATTGTACATGGATGGTTTTGCTTCTCAAAATGTTGACGGAGTTGAAGAAACAAATGTGAACTATGAGGACTTGAAGTTAATGGATGATTTTCAAGATTCTCCGAATCATAATTCGAGTCGAAAATCATGGGATACAGATGGTTTTGCTTCTCAAAATGTTGACAGAGTTGAGGAAACAGATGTGAACTATGAGGAAATGGATGATTTTCAAGATTCTCCAAATCATCATTCGAATCGAAAATCATGGGAAATGGATGGTTTTGCTTCTCAAAATGTTGATATAGTTGAGGAAACAGATGTGAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561896" ref_strand="+" ref_description="SGN-E561896 [20133]">
      <seq>gttggatacaaatattgtatcgaagaaattcagaaattttacaaaagctatgctgaaaaaatgagaaaattggacatcttgaattaccagacattgaatgctatcagttttcttcagcttaaggattccgaaatgtttatgtcaagcaaaaaaacatcgatttcaataaccaaagcctttgctttaccaagcttcttggcaaacaaacagaggaagatctttgctgatcctgcacaaaaatccattagtgaaatgaatatagacttggaaattgtatatgttggacaaatttgcttatcatgggaaattctctattggcaatatggtaaagccaaggacttgcttgaacatgatccacacgagtatcacacatataaccaagtggccggagaatatcagcaatttcaagtacttttacaaagatttgtcgaggatgagccatttcaaggaccacgagtccaaaactatgtcaggaagaggtgcattctccgtaactttcttcaagtcccgagcataagagcatgatcgtttaacgggaaagaagggcgaacgagcaagaggaaacaagatgtcatttccattgtgaaattgggcgaagttattacggagacaatgcaaagtttctagagagttcttcgtgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="57954" stop="60112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58253" g_stop="58358" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58359" i_stop="59398" i_length="1040">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59399" g_stop="59812" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="520" r_length="414" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59813" i_stop="59884" i_length="72">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.526" a_score="0.75"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59885" g_stop="60009" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="645" r_length="125" r_score="0.808"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E561896" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58253" e_stop="58358"/>
          <exon e_start="59399" e_stop="59812"/>
          <exon e_start="59885" e_stop="60009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGATACAAATATTGTATCGAAGAAATTCAGAAATTTTACAAGAGCTATGCTGAAAAGATGAAAAAATTGGACATCTTGAATTACCAGACATTGAATGCTATCAGTAAGTCTCTAAAACCATCACTATATTCGATTATCATCGATTATCTTTGCCATGTTTTCTATAGCTTCTGTTTTGATATGCTTTACCTTGAGTCGAGTGTCTATCGAAAACAATCTCTTTACCTAGTCTACGTATACATTATCCTCCTTCCATCTTTAATTGTTACATTTTGGTTTGGTGTATGACAATAATGTATCTTGTTTTCTGTCCATTTCAATACTATTAAAAGATCTTGTAATGTCATTTTCAGCTAACACAATAAATAAATTCATTCTGAACCACCAAATTTATGTATTGAAGATTGAACTTAATATCATATATGCTTATTGTCTTGTCTACACTAAGTACTACTAATTTATAATATTTTTGACCATTTGATCCTTTGAAAAGACCAGTGTGACATAATCACCACTTCTTGAAAGTAGCCATTATCAAATGCCTAAAGGGGTGCTTTTGTTTTTCCTTTTCCAATTATGTCATGCAATTATCAATGGCTTTTAATGCCACTCAACAGACTTTTTTTGGTCCTTCCACTAGGTTCCAATTTTCTTGGCCTAATGAATTGCTGGTTTAGGAACAATAGCATAACCCCACAACCACTTTCATCTTGGACTTTATATGGAAGAAAAAATTACACAAAATTATGAATTGTCAAATTGGAATAAAATACAACAACTTTTCCATTCGTGGTAAAATGGTCGAATATGCCCTTGAACTTCGCGAATGGTCTAAGTTTGTCCTTTAGTTGTTGTTGTTAGTCTATACACTACAACAATAGCGATGATATTTTAATGTCGCAAAAGCATTTAGCGGTTATTGAGCTAATGTCATTGCATCCAGAGTCGCTTTAGTCTTTAGCGGCATTTATATAAAGTTTTGGTTATAAATACTCATATTTATCATTGCCTCTAAAAAACTGAGGGCGAAATTGTTCTATTTCGCATAGTCTAGGGGTGATTTCATTGACTTCAAATTAGCTTCTTGAAAAGTTCTTTATGAGTAGTAGACTGGTGATTCTGATGTTTTACTCTTTAATATAGGTTTTCTTCAGCTTAAGGATTCCGAAGGGTTTATGTCGAGCAAAAAAACGTCAATGTCGATAGCCAAAGCCTTTGCTTTACCAAGCTTCTTGGCAAACAAACAAAGGAAGATCTTTGCTGATCCTGCACAAAAATCCATTTGTGAAATGAATAGAGACTTGGAAATAGTATATGTTGGGCAAATTTGCCTATCATGGGAAATTCTCTATTGGCAATATGGTAAAGCTAAGGACTTGCTTGAACATGATCCACATGAGTATCACACATATAACCAAGTTGCCGGAGAATATCAGCAATTTCAAGTACTTTTACAAAGATTTGTCGAGGATGAGCCATTTCAAGGACCACGAGTCCAATATTATGTCAGGAAGAGGTGCATTCTCCGTAGCTTTCTTCAAGTCCCGAGCATTAGAGGTATGCATTTTTTCGTTGAGTTGTTAAAATACCTAGACTCATAGTAACGAGAGGAATACTTTGACTGTCTAGCAGATGATCGTTTTAAGGGTAAGAAGGGAGGACGAG-AAGAGGAAA-AGGATGTCATTTCCATAATGAAATTGGGCGACGTTATTAAGGAGACGATGCAAGTTTTCTGGGAGTTTCTTCGTGCTGAT</genome_strand>
        <mrna_strand>GTTGGATACAAATATTGTATCGAAGAAATTCAGAAATTTTACAAAAGCTATGCTGAAAAAATGAGAAAATTGGACATCTTGAATTACCAGACATTGAATGCTATCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTTCAGCTTAAGGATTCCGAAATGTTTATGTCAAGCAAAAAAACATCGATTTCAATAACCAAAGCCTTTGCTTTACCAAGCTTCTTGGCAAACAAACAGAGGAAGATCTTTGCTGATCCTGCACAAAAATCCATTAGTGAAATGAATATAGACTTGGAAATTGTATATGTTGGACAAATTTGCTTATCATGGGAAATTCTCTATTGGCAATATGGTAAAGCCAAGGACTTGCTTGAACATGATCCACACGAGTATCACACATATAACCAAGTGGCCGGAGAATATCAGCAATTTCAAGTACTTTTACAAAGATTTGTCGAGGATGAGCCATTTCAAGGACCACGAGTCCAAAACTATGTCAGGAAGAGGTGCATTCTCCGTAACTTTCTTCAAGTCCCGAGCATAAGAG........................................................................C--ATGATCGTTTAACGGGAAAGAAGGGCGAACGAGCAAGAGGAAACAAGATGTCATTTCCATTGTGAAATTGGGCGAAGTTATTACGGAGACAATGCAAAGTTTCTAGAGAGTTCTTCGTGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737249" ref_strand="-" ref_description="SGN-E737249 [LC09AA10]">
      <seq>aatttcaagtacttttacaaagatttgtggaggatgagccatttcaaggaccacgagtccaatattatgtcaggaagaggtgcattctccgtagctttcttcaagtcccgagcattagaggtatgcattttttcgttgagttgttaaaatacctagactcatagtaacgagaggaatactttgactgtctagcagatgatcgttttaagggtaagaagggaggacgagaagaggaaaaggatgtcatttccataatgaaattgggcgacgttattaaggagacgatgcaagttttctgggagtttcttcgtgctgataaacgtgaagctaatttggccttaaagggtgttcaaggaactcaaatggacaatgcagaaatcgagctttttatgaatgtcaaactagaccttcaaaagaaggagaggaagttgaaagatgtacaaagaagtggcaattgcatagtgaagaagttccaaaaacaacaagaacgtcgattgagtccttcattattcgcgtcactcgtggagctaaagttggtatcaagagtgctaagtttaccaagattaaggagagatcatttggtttggtgccagaggaaactaagcaatatcaatgttgcagggagaaaagttagcatggaacaatctttttcactttttccatgttaagtattagtgattagtatatgtctagtttttcataatgctagtgaagatcttcttaggactatagttctaagctacgttgttcggactcttcaaaaatgtcaccgaatgcatgtcagattctctaaaagtagtgtatttttggagaacctgacacgggtgcgacatcaaaagtgaaagagtccgcacaacttaggttctaggctatgttagtacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="59393" stop="61048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59693" g_stop="60108" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60109" i_stop="60283" i_length="175">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60284" g_stop="60749" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="882" r_length="466" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E737249" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737249" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59693" e_stop="60108"/>
          <exon e_start="60284" e_stop="60749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCAAGTACTTTTACAAAGATTTGTCGAGGATGAGCCATTTCAAGGACCACGAGTCCAATATTATGTCAGGAAGAGGTGCATTCTCCGTAGCTTTCTTCAAGTCCCGAGCATTAGAGGTATGCATTTTTTCGTTGAGTTGTTAAAATACCTAGACTCATAGTAACGAGAGGAATACTTTGACTGTCTAGCAGATGATCGTTTTAAGGGTAAGAAGGGAGGACGAGAAGAGGAAAAGGATGTCATTTCCATAATGAAATTGGGCGACGTTATTAAGGAGACGATGCAAGTTTTCTGGGAGTTTCTTCGTGCTGATAAACGTGAAGCTAATTTGGCCTTAAAGGGTGTTCAAGGAACTCAAATGGACAATGCAGAAATCGAGCTTTTTATGAATGTCAAACTAGACCTTCAAAAGGTTAGTCTAATCTTTACCTCATAGATACGCCACACGCCTTTCACTACTTAAAAAAAAAAAAAAAACTTAGCAACATTTCGTAGCTACAACAACAACATGTTGACGAAGTTCATAGCCAATTCCAGTTCTTTTGGTTTCTAAACTTTGTGAATCACTTGATATTCTCTATATGCAGAAGGAGAGGAAGTTGAAAGATGTACAAAGAAGTGGCAATTGCATAGTGAAGAAGTTCCAAAAACAACAAGAACGTCGATTGAGTCCTTCATTATTCGCGTCACTCGTGGAGCTAAAGTTGGTATCAAGAGTGCTAAGTTTACCAAGATTAAGGAGAGATCATTTGGTTTGGTGCCAGAGGAAACTAAGCAATATCAATGTTGCAGGGAGAAAAGTTAGCATGGAACAATCTTTTTCACTTTTTCCATGTTAAGTATTAGTGATTAGTATATGTCTAGTTTTTCATAATGCTAGTGAAGATCTTCTTAGGACTATAGTTCTAAGCTACGTTGTTCGGACTCTTCAAAAATGTCACCGAATGCATGTCAGATTCTCTAAAAGTAGTGTATTTTTGGAGAACCTGACACGGGTGCGACATCAAAAGTGAAAGAGTCCGCACAACTTAGGTTCTAGGCTATGTTAGTACC</genome_strand>
        <mrna_strand>AATTTCAAGTACTTTTACAAAGATTTGTGGAGGATGAGCCATTTCAAGGACCACGAGTCCAATATTATGTCAGGAAGAGGTGCATTCTCCGTAGCTTTCTTCAAGTCCCGAGCATTAGAGGTATGCATTTTTTCGTTGAGTTGTTAAAATACCTAGACTCATAGTAACGAGAGGAATACTTTGACTGTCTAGCAGATGATCGTTTTAAGGGTAAGAAGGGAGGACGAGAAGAGGAAAAGGATGTCATTTCCATAATGAAATTGGGCGACGTTATTAAGGAGACGATGCAAGTTTTCTGGGAGTTTCTTCGTGCTGATAAACGTGAAGCTAATTTGGCCTTAAAGGGTGTTCAAGGAACTCAAATGGACAATGCAGAAATCGAGCTTTTTATGAATGTCAAACTAGACCTTCAAAAG...............................................................................................................................................................................AAGGAGAGGAAGTTGAAAGATGTACAAAGAAGTGGCAATTGCATAGTGAAGAAGTTCCAAAAACAACAAGAACGTCGATTGAGTCCTTCATTATTCGCGTCACTCGTGGAGCTAAAGTTGGTATCAAGAGTGCTAAGTTTACCAAGATTAAGGAGAGATCATTTGGTTTGGTGCCAGAGGAAACTAAGCAATATCAATGTTGCAGGGAGAAAAGTTAGCATGGAACAATCTTTTTCACTTTTTCCATGTTAAGTATTAGTGATTAGTATATGTCTAGTTTTTCATAATGCTAGTGAAGATCTTCTTAGGACTATAGTTCTAAGCTACGTTGTTCGGACTCTTCAAAAATGTCACCGAATGCATGTCAGATTCTCTAAAAGTAGTGTATTTTTGGAGAACCTGACACGGGTGCGACATCAAAAGTGAAAGAGTCCGCACAACTTAGGTTCTAGGCTATGTTAGTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395333" ref_strand="+" ref_description="SGN-E395333 [TUS-16-B3](-)">
      <seq>tcaagtcccgagcattagagatgatcgttttaagggtaagaagggaggacgagaagaggaaaaggatgtcatttccataatgaaattgggcgacgttattaaggagacgatgcaagttttctgggagtttcttcgtgctgataaacgtgaagctaatttggccttaaagggtgttcaaggaactcaaatggacaatgcagaaatcgagctttttatgaatgtcaaactagaccttcaaaagaaggagaggaagttgaaagatgtacaaagaagtggcaattgcatagtgaagaagttccaaaaacaacaagaacgtcgattgagtccttcattattcgcgtcactcgtggagctaaagttggtatcaagagtgctaagtttaccaagattaaggagagatcatttggtttggtgccagaggaaactaagcaatatcaatgttgcagggagaaaagttagcatggaacaatctttttcactttttccatgttaagtattagtgattagtatatgtctagtttttcataatgctagtgaagatcttcttaggactatagttttaagctacgttgttcggactcttcaaaaatgtcaccgaatgcatgtcagattctctaaaagtagtgtatttttggagaacctgacacgggtgcgacatcaaaagtgaaagagtccgcacaacttaggttctaggctatgttagtacccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="59493" stop="61060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59793" g_stop="59812" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59813" i_stop="59887" i_length="75">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.383" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59888" g_stop="60108" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="241" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60109" i_stop="60283" i_length="175">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60284" g_stop="60760" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="718" r_length="477" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E395333" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59793" e_stop="59812"/>
          <exon e_start="59888" e_stop="60108"/>
          <exon e_start="60284" e_stop="60760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTCCCGAGCATTAGAGGTATGCATTTTTTCGTTGAGTTGTTAAAATACCTAGACTCATAGTAACGAGAGGAATACTTTGACTGTCTAGCAGATGATCGTTTTAAGGGTAAGAAGGGAGGACGAGAAGAGGAAAAGGATGTCATTTCCATAATGAAATTGGGCGACGTTATTAAGGAGACGATGCAAGTTTTCTGGGAGTTTCTTCGTGCTGATAAACGTGAAGCTAATTTGGCCTTAAAGGGTGTTCAAGGAACTCAAATGGACAATGCAGAAATCGAGCTTTTTATGAATGTCAAACTAGACCTTCAAAAGGTTAGTCTAATCTTTACCTCATAGATACGCCACACGCCTTTCACTACTTAAAAAAAAAAAAAAAACTTAGCAACATTTCGTAGCTACAACAACAACATGTTGACGAAGTTCATAGCCAATTCCAGTTCTTTTGGTTTCTAAACTTTGTGAATCACTTGATATTCTCTATATGCAGAAGGAGAGGAAGTTGAAAGATGTACAAAGAAGTGGCAATTGCATAGTGAAGAAGTTCCAAAAACAACAAGAACGTCGATTGAGTCCTTCATTATTCGCGTCACTCGTGGAGCTAAAGTTGGTATCAAGAGTGCTAAGTTTACCAAGATTAAGGAGAGATCATTTGGTTTGGTGCCAGAGGAAACTAAGCAATATCAATGTTGCAGGGAGAAAAGTTAGCATGGAACAATCTTTTTCACTTTTTCCATGTTAAGTATTAGTGATTAGTATATGTCTAGTTTTTCATAATGCTAGTGAAGATCTTCTTAGGACTATAGTTCTAAGCTACGTTGTTCGGACTCTTCAAAAATGTCACCGAATGCATGTCAGATTCTCTAAAAGTAGTGTATTTTTGGAGAACCTGACACGGGTGCGACATCAAAAGTGAAAGAGTCCGCACAACTTAGGTTCTAGGCTATGTTAGTACCCAAAAAAAAAA</genome_strand>
        <mrna_strand>TCAAGTCCCGAGCATTAGAG...........................................................................ATGATCGTTTTAAGGGTAAGAAGGGAGGACGAGAAGAGGAAAAGGATGTCATTTCCATAATGAAATTGGGCGACGTTATTAAGGAGACGATGCAAGTTTTCTGGGAGTTTCTTCGTGCTGATAAACGTGAAGCTAATTTGGCCTTAAAGGGTGTTCAAGGAACTCAAATGGACAATGCAGAAATCGAGCTTTTTATGAATGTCAAACTAGACCTTCAAAAG...............................................................................................................................................................................AAGGAGAGGAAGTTGAAAGATGTACAAAGAAGTGGCAATTGCATAGTGAAGAAGTTCCAAAAACAACAAGAACGTCGATTGAGTCCTTCATTATTCGCGTCACTCGTGGAGCTAAAGTTGGTATCAAGAGTGCTAAGTTTACCAAGATTAAGGAGAGATCATTTGGTTTGGTGCCAGAGGAAACTAAGCAATATCAATGTTGCAGGGAGAAAAGTTAGCATGGAACAATCTTTTTCACTTTTTCCATGTTAAGTATTAGTGATTAGTATATGTCTAGTTTTTCATAATGCTAGTGAAGATCTTCTTAGGACTATAGTTTTAAGCTACGTTGTTCGGACTCTTCAAAAATGTCACCGAATGCATGTCAGATTCTCTAAAAGTAGTGTATTTTTGGAGAACCTGACACGGGTGCGACATCAAAAGTGAAAGAGTCCGCACAACTTAGGTTCTAGGCTATGTTAGTACCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344359" ref_strand="+" ref_description="SGN-E344359 [cTOF-16-F4]">
      <seq>cttcttcagcctctaaaaaccagagagtagagtaacagagccgccgtcaaaaatggtgcaacggcttacttaccgtaaacggcatagctatgcaaccaagtcgaaccaacatagggttgtgaaaaccccaggtggaaagctgatttaccagactacgaagaagaagggctaatggacctaagtgccctgtaactggaaagagaattcaagggattccacacttgagacctgctgagtacaagaagatccaggttatctaggaacaggaggactgtgaaccgtgcttatggtggtgtgttgtccggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagaatcgtgaagaaggttttgaagaatccagaaagccaaggaaaagctagcatccaagagctaagccttgaatcctcgatgatgtcgtgagaggagtttctgatactgcaggtttctaggaaatcatgactgtattttgatttttggtcttgagatttgtatgttgctggtttttcgttaaaatacgatattggaggtctttcttcagtttgtcgaaatatccgttctcctaggtatctctattttcttgttctgaatatttaaacttgttatggatatttgcaacttctattcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63514" stop="66751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63814" g_stop="63944" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="212" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="323" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66453" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="653" r_length="330" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E344359" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63814" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCAGCCTCTAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAG-AGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAG-AGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAG-ATCGTGAAGAAGGTTTTGAAG-ATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATT</genome_strand>
        <mrna_strand>CTTCTTCAGCCTCTAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAG....................................................................................................................................................................................GTGGAAAGCTGATTTACCAGACTACGAAGAAGAAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGAATCGTGAAGAAGGTTTTGAAGAATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485026" ref_strand="+" ref_description="SGN-E485026 [cSTE-16-A24]">
      <seq>cttcagcctccaaaaaccagagagtagagtaacagagccgccgtcaaaaatggtgcaacggcttacttaccgtaaacggcatagctatgcaaccaagtcgaaccaacatagggttgtcaaaaccccaggtgggaagctgatttaccagactacaaagaaaagggctaatggacctaagtgccctgtaactgggaagagaattcaagggattccacacttgagacctgctgagtacaagaggtccaggttacctagaaacaggaggactgtgaaccgtgcttatggcggtgtgttgtcaggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagattgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagaactaagcctttaatccttgatgatgtcgtgagaggagtttctgatactgcaggctactaggaaatcatgactgtatttggatttttggtcttgagatttgtatgttgctggttttcgttaaaagatgatattggaggtctttcttcagtttgtcgaaatatctgttctcgtaggtatctctattctcttgttctggatatttaaacttcttatgatccatttgcacttcaattaactaggctattcgttccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63517" stop="66768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63817" g_stop="63944" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="208" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="318" r_length="110" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66468" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="659" r_length="341" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="660" polyA_stop="674"/>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E485026" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63817" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAGCCTCTAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATG-GATATTTGCAACTTCTATTCAATTAGGCTATTCGTTCCA</genome_strand>
        <mrna_strand>CTTCAGCCTCCAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTCAAAACCCCAG....................................................................................................................................................................................GTGGGAAGCTGATTTACCAGACTACAAAGAAAAGGGCTAATGGACCTAAGTGCCCTGTAACTGGGAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGGTCCAGGTTACCTAGAAACAGGAGGACTGTGAACCGTGCTTATGGCGGTGTGTTGTCAGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATTGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAACTAAGCCTTTAATCCTTGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGCTACTAGGAAATCATGACTGTATTTGGATTTTTGGTCTTGAGATTTGTATGTTGCTGG-TTTTCGTTAAAAGATGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCTGTTCTCGTAGGTATCTCTATTCTCTTGTTCTGGATATTTAAACTTCTTATGATCCATTTGC-ACTTCAATT-AACTAGGCTATTCGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448341" ref_strand="+" ref_description="SGN-E448341 [cSTS-2-N19]">
      <seq>cttcagcctccaaaaaccagagagtagagtaacagagccgccgtcaaaaatggtgcaacggcttacttaccgtaaacggcatagctatgcaaccaagtcgaaccaacatagggttgtcaaaaccccaggtgggaagctgatttaccagactacaaagaagagggctaatggacctaagtgccctgtaactgggaagagaattcaagggattccacacttgagacctgctgagtacaagaggtccaggttacctagaaacaggaggactgtgaaccgtgcctatggtggtgtgttgtcaggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagattgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagaactaagcctttaatccttgatgatgtcatgagaggagtttctgatactgcaggctactaggaaatcatgactgtattttgatttttggtcttgagatttgtatgttactggttttcgttaaaatacgatattggaggtctttcttcagtttgtcgaaatatctgttctcgtaggtatctctattttcttgttctggatatttaaacttcttatgatccatttgcacttcaattcaactaggttattcgttccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63517" stop="66732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63817" g_stop="63944" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="208" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="318" r_length="110" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66468" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="660" r_length="342" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E448341" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63817" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAGCCTCTAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATG-GATATTTGCAACTTCTATTCAATTAGGCTATTCGTTCCA</genome_strand>
        <mrna_strand>CTTCAGCCTCCAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTCAAAACCCCAG....................................................................................................................................................................................GTGGGAAGCTGATTTACCAGACTACAAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGGAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGGTCCAGGTTACCTAGAAACAGGAGGACTGTGAACCGTGCCTATGGTGGTGTGTTGTCAGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATTGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAACTAAGCCTTTAATCCTTGATGATGTCATGAGAGGAGTTTCTGATACTGCAGGCTACTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTACTGG-TTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCTGTTCTCGTAGGTATCTCTATTTTCTTGTTCTGGATATTTAAACTTCTTATGATCCATTTGC-ACTTCAATTCAACTAGGTTATTCGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453966" ref_strand="+" ref_description="SGN-E453966 [cSTS-21-P23]">
      <seq>cttcagcctccaaaaaccagagagtagagtaacagagccgccgtcaaaaatggtgcaacggcttacttaccgtaaacggcatagctatgcaaccaagtcgaaccaacatagggttgtcaaaaccccaggtgggaagctgatttaccagactacaaagaagagggctaatggacctaagtgccctgtaactgggaagagaattcaagggattccacacttgagacctgctgagtacaagaggtccaggttacctagaaacaggaggactgtgaaccgtgcctatggtggtgtgttgtcaggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagattgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagaactaagcctttaatccttgatgatgtcatgagaggagtttctgatactgcaggctactaggaaatcatgactgtattttgatttttggtcttgagatttgtatgttactggttttcgttaaaatacgatattggaggtctttcttcagtttgtcgaaatatctgttctcgtaggtatctctattttcttgttctggatatttaaacttcttatgatccatttgcacttcaattcaactaggttattcgttccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63517" stop="66732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63817" g_stop="63944" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="208" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="318" r_length="110" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66468" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="660" r_length="342" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="661" polyA_stop="670"/>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E453966" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63817" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAGCCTCTAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATG-GATATTTGCAACTTCTATTCAATTAGGCTATTCGTTCCA</genome_strand>
        <mrna_strand>CTTCAGCCTCCAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTCAAAACCCCAG....................................................................................................................................................................................GTGGGAAGCTGATTTACCAGACTACAAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGGAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGGTCCAGGTTACCTAGAAACAGGAGGACTGTGAACCGTGCCTATGGTGGTGTGTTGTCAGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATTGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAACTAAGCCTTTAATCCTTGATGATGTCATGAGAGGAGTTTCTGATACTGCAGGCTACTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTACTGG-TTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCTGTTCTCGTAGGTATCTCTATTTTCTTGTTCTGGATATTTAAACTTCTTATGATCCATTTGC-ACTTCAATTCAACTAGGTTATTCGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734919" ref_strand="+" ref_description="SGN-E734919 [LB13DG09]">
      <seq>cttcagcctctaaaaaccagagagtagagtaacagagccgccgtcaaaaatggtgcaacggcttacttaccgtaaacggcatagctatgcaaccaagtcgaaccaacatagggttgtgaaaaccccaggtggaaagctgatttaccagactacgaagaagagggctaatggacctaagtgccctgtaactggaaagagaattcaagggattccacacttgagacctgctgagtacaagagatccaggttatctaggaacaggaggactgtgaaccgtgcttatggtggtgtgttgtccggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagatcgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagagctaagccttgaatcctcgatgatgtcgtgagaggagtttctgatactgcaggtttctaggaaatcatgactgtattttgatttttggtcttgagatttgtatgttgctggtttttcgttaaaatacgatattggaggtctttcttcagtttgtcgaaatatccgttctcctaggtatctctattttcttgttctgaatatttaaacttgttatggatatttgcaacttctattcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63517" stop="66751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63817" g_stop="63944" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="208" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="318" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66461" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="654" r_length="336" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E734919" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63817" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAGCCTCTAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTATT</genome_strand>
        <mrna_strand>CTTCAGCCTCTAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAG....................................................................................................................................................................................GTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322291" ref_strand="+" ref_description="SGN-E322291 [cTOB-24-I5]">
      <seq>ttcagcctctaaaaaccagagagtagagtaacagagccgccgtcaaaaatggtgcaacggcttacttaccgtaaacggcatagctatgcaaccaagtcgaaccaacatagggttgtgaaaaccccaggtggaaagctgatttaccagactacgaagaagagggctaatggacctaagtgccctgtaactggaaagagaattcaagggattccacacttgagacctgctgagtacaagagatccaggttatctaggaacaggaggactgtgaaccgtgcttatggtggtgtgttgtccggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagatcgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagagctaagccttgaatcctcgatgatgtcgtgagaggagtttctgatactgcaggtttctaggaaatcatgactgtattttgatttttggtcttgagatttgtatgttgctggtttttcgttaaaatacgatattggaggtctttcttcagtttgtcgaaatatccgttctcctaggtatctctattttcctgttctgaatattaaacttgttatggatatttgcaacttctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63518" stop="66747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63818" g_stop="63944" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="207" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="317" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66447" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="638" r_length="321" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E322291" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63818" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCCTCTAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTAT</genome_strand>
        <mrna_strand>TTCAGCCTCTAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAG....................................................................................................................................................................................GTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCCTGTTCTGAATA-TTAAACTTGTTATGGATATTTGCAACTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419354" ref_strand="+" ref_description="SGN-E419354 [STM-29-O10]">
      <seq>tcagcctccaaaaaccagagagtagagttacagagccgccgtcaaaaatggtgcaacggcttacttaccgtaaacggcatagctatgcaaccaagtcgaaccaacatagggttgtcaaaaccccaggtgggaagctgatttaccagactacaaagaagagggctaatggacctaagtgccctgtaactggaaagagaattcaagggattccacacttgagacctgctgagtacaagaggtccaggttacctagaaacaggaggactgtgaaccgtgcttatggtggtgtgttgtcaggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagattgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagaactaagcctttaatccttgatgatgtcgtgagaggagtttctgatactgcaggctactaggaaatcatgactgtatttggatttttggtcttgagatttgtatgttgctggttttcgttaaaatacgatattggaggcctttcttcagtttgtcgaaatatctgttctcgtaggtatctttattttcttcgttctggatatttaaacttcttatggatatttgcactttaattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63519" stop="66751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63819" g_stop="63944" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="206" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="316" r_length="110" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66459" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="649" r_length="333" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E419354" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63819" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCCTCTAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTT-GTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTA</genome_strand>
        <mrna_strand>TCAGCCTCCAAAAACCAGAGAGTAGAGTTACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTCAAAACCCCAG....................................................................................................................................................................................GTGGGAAGCTGATTTACCAGACTACAAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGGTCCAGGTTACCTAGAAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCAGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATTGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAACTAAGCCTTTAATCCTTGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGCTACTAGGAAATCATGACTGTATTTGGATTTTTGGTCTTGAGATTTGTATGTTGCTGG-TTTTCGTTAAAATACGATATTGGAGGCCTTTCTTCAGTTTGTCGAAATATCTGTTCTCGTAGGTATCTTTATTTTCTTCGTTCTGGATATTTAAACTTCTTATGGATATTTGC-ACTTTAATTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297700" ref_strand="+" ref_description="SGN-E297700 [cLET-28-O1]">
      <seq>tcagcctctaaaaaccagagagtagagtaacagagccgtcgtcaaaaatggtgcaacggcttacttaccgtaaacggcatagctatgcaaccaagtcgaaccaacatagggttgtgaaaaccccaggtggaaagctgatttaccagactacgaagaagagggctaatggacctaagtgccctgtaactggaaagagaattcaagggattccacacttgagacctgctgagtacaagagatccaggttatctaggaacaggaggactgtgaaccgtgcttatggtggtgtgttgtccggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagatcgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagagctaagccttgaatcctcgatgatgtcgtgagaggagtttctgatactgcaagtttctaggaaatcatgactgtattttgatttttgggcttgagatttgtatgttgctggtttttagttaaaatacgatattggaggtctttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63519" stop="66660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63819" g_stop="63944" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="206" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="316" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66360" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="551" r_length="235" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E297700" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63819" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCCTCTAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTT</genome_strand>
        <mrna_strand>TCAGCCTCTAAAAACCAGAGAGTAGAGTAACAGAGCCGTCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAG....................................................................................................................................................................................GTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAAGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGGCTTGAGATTTGTATGTTGCTGGTTTTTAGTTAAAATACGATATTGGAGGTCTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443942" ref_strand="+" ref_description="SGN-E443942 [cSTA-40-F14]">
      <seq>tcagcctccaaaaaccagagagtagagttacagagccgccgtcaaaaatggtgcaacggcttacttaccgtaaacggcatagctatgcaaccaagtcgaaccaacatagggttgtcaaaaccccaggtgggaagctgatttaccagactacaaagaagagggctaatggacctaagtgccctgtaactggaaagagaattcaagggattccacacttgagacctgctgagtacaagaggtccaggttacctagaaacaggaggactgtgaaccgtgcttatggtggtgtgttgtcaggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagattgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagaactaagcctttaatccttgatgatgtcgtgagaggagtttctgatactgcaggctactaggaaatcatgactgtatttggatttttggtcttgagatttgtatgttgctggttttcgttaaaatacgatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63519" stop="66648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63819" g_stop="63944" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="206" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="316" r_length="110" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66348" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="538" r_length="222" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E443942" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63819" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCCTCTAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTG</genome_strand>
        <mrna_strand>TCAGCCTCCAAAAACCAGAGAGTAGAGTTACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTCAAAACCCCAG....................................................................................................................................................................................GTGGGAAGCTGATTTACCAGACTACAAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGGTCCAGGTTACCTAGAAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCAGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATTGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAACTAAGCCTTTAATCCTTGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGCTACTAGGAAATCATGACTGTATTTGGATTTTTGGTCTTGAGATTTGTATGTTGCTGG-TTTTCGTTAAAATACGATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561036" ref_strand="+" ref_description="SGN-E561036 [20784]">
      <seq>cagcctcaaaaaccagagagtagagttacagagccgccgtcaaaaatggtgcaacggcttacttacccgtaaacggcatagctatgcaaccaagtcgaaccaacatagggttgtcaaaaccccaggtgggaagctgatttaccagactacaaagaagagggctaatgggacctaagtgccctgtaactggaaagagaattcaagggattccacacttgagacctgctgagtacaagaggtccagggttacctagaaacaggaggactgtgaaccgtgcttatggtggtgtgttgtcaggcagtggctgttacgtgaacaggatcatcagagcctttttggttgaagaacaaaagattgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagaactaagcctttaatacttgatgatgtcgtgagaggagtttctgatactgcaggctactaggaaatcatgactgtatttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63520" stop="66596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63820" g_stop="63944" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="206" r_length="81" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="320" r_length="114" r_score="0.891"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="0.85"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66296" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="491" r_length="171" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E561036" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63820" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCTCTAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTA-CCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAAT-GGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCA-GGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGT-GCTG-TACGTGAA-AGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGAT</genome_strand>
        <mrna_strand>CAGCCTC-AAAAACCAGAGAGTAGAGTTACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTCAAAACCCCAG....................................................................................................................................................................................GTGGGAAGCTGATTTACCAGACTACAAAGAAGAGGGCTAATGGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGGTCCAGGGTTACCTAGAAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCAGGCAGTGGCTGTTACGTGAACAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATTGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAACTAAGCCTTTAATACTTGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGCTACTAGGAAATCATGACTGTATTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437450" ref_strand="+" ref_description="SGN-E437450 [cSTA-3-F14]">
      <seq>agcctccaaaaaccagagagtagagtaacagagccgccgtcaaaaatggtgcaacggcttacttaccgtaaacggcatagctatgcaaccaagtcgaaccaacatagggttgtcaaaaccccaggtgggaagctgatttaccagactacaaagaaaagggctaatggacctaagtgccctgtaactgggaagagaattcaagggattccacacttgagacctgctgagtacaagaggtccaggttacctagaaacaggaggactgtgaaccgtgcttatggcggtgtgttgtcaggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagattgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagaactaagcctttaatccttgatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63521" stop="66540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63821" g_stop="63944" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="204" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="314" r_length="110" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66240" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="429" r_length="115" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E437450" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63821" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTCTAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGT</genome_strand>
        <mrna_strand>AGCCTCCAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTCAAAACCCCAG....................................................................................................................................................................................GTGGGAAGCTGATTTACCAGACTACAAAGAAAAGGGCTAATGGACCTAAGTGCCCTGTAACTGGGAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGGTCCAGGTTACCTAGAAACAGGAGGACTGTGAACCGTGCTTATGGCGGTGTGTTGTCAGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATTGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAACTAAGCCTTTAATCCTTGATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396073" ref_strand="+" ref_description="SGN-E396073 [TUS-19-A3]">
      <seq>ctaaaaaccagagagtacattaacagagccgccgtcaaaaatggtgcaacggcttacttaccgtaaacggcatagcgatgcaaccaagtcgaaccaacatagggttgtgaaaaccccaggtggaaagctgatttaccagactacgaagaagagggctaatggacctaagtgccctgtaactggaaagagaattcaagggattccacacttgagacctgctgagtacaagagatccaggttatctaggaacaggaggactgtgaaccgtgcttatggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63526" stop="66306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63826" g_stop="63944" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="199" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66006" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="278" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E396073" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63826" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTG</genome_strand>
        <mrna_strand>CTAAAAACCAGAGAGTACATTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCGATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAG....................................................................................................................................................................................GTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589198" ref_strand="+" ref_description="SGN-E589198 [42768]">
      <seq>caaaaaccagagagtagagttacagagccgccgtcaaaaatggtgcaacggcttacttaccgtaaacggcatagctatgcaaccaagtcgaaccaacatagggttgtcaaaaccccaggtgggaagctgatttaccagactacaaagaagagggctaatggacctaagtgccctgtaactggaaagagaattcaagggattccacacttaagacctgctgagtacaagaggtccaggttacctagaaacaggaggactgtgaaccgtgcttatggtggtgtgttgtcaggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagattgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagaactaagcatctttaatcctttgatgatgtcgtgagaggagtttctgatactgcaggctactaggaaatcacgactgtattttgatttttggtcttgagatgtatgttgctggttttcgttaaaatacgatattggaggtctttcttcagtttgtcgaaatatctgttctcgtaggtatctctattttcttgttctggatatttaaacttcttatggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63528" stop="66733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63827" g_stop="63944" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="198" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="308" r_length="110" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66433" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="616" r_length="308" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E589198" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63827" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGC--CTTGAATCC-TCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATA</genome_strand>
        <mrna_strand>CAAAAACCAGAGAGTAGAGTTACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTCAAAACCCCAG....................................................................................................................................................................................GTGGGAAGCTGATTTACCAGACTACAAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTAAGACCTGCTGAGTACAAGAGGTCCAGGTTACCTAGAAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCAGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATTGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAACTAAGCATCTTTAATCCTTTGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGCTACTAGGAAATCACGACTGTATTTTGATTTTTGGTCTTGAGA--TGTATGTTGCTGG-TTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCTGTTCTCGTAGGTATCTCTATTTTCTTGTTCTGGATATTTAAACTTCTTATGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231542" ref_strand="+" ref_description="SGN-E231542 [cLED-4-L5]">
      <seq>taaaaaccagagagtagagtaacagagccgccgtcaaaaatggtgcaacggcttacttaccgtaaacggcatagctatgcaaccaagtcgaaccaacatagggttgtgaaaaccccaggtggaaagctgatttaccagactacgaagaagagggctaatggacctaagtgccctgtaactggaaagagaattcaagggattccacacttgagacctgctgagtacaagagatccaggttatctaggaacaggaggactgtgaaccgtgcttatggtggtgtgttgtccggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagatcgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagagctaagccttgaatcctcgatgatgtcgtgagaggagtttctgatactgcaggtttctaggaaatcatgactgtattttgatttttggtcttgagatttgtatgttgctggtttttcgttaaaatacgatattggaggtctttcttcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63527" stop="66664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63827" g_stop="63944" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="198" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="308" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66364" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="547" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E231542" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63827" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGT</genome_strand>
        <mrna_strand>TAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAG....................................................................................................................................................................................GTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324494" ref_strand="+" ref_description="SGN-E324494 [cTOC-9-C17]">
      <seq>taaaaaccagagagtagagtaacagagccgccgtcaaaaatggtgcaacggcttacttaccgtaaacggcatagctatgcaaccaagtcgaaccaacatagggttgtgaaaaccccaggtggaaagctgatttaccagactacgaagaagagggctaatggacctaagtgccctgtaactggaaagagaattcaagggattccacacttgagacctgctgagtacaagagatccaggttatctaggaacaggaggactgtgaaccgtgcttatggtggtgtgttgtccggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagatcgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagagctaagccttgaatcctcgatgatgtcgtgagaggagtttctgatactgcaggtttctaggaaatcatgactgtattttgatttttggtcttgagatttgtatgttgctggtttttcgttaaaatacgatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63527" stop="66647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63827" g_stop="63944" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="198" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="308" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66347" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="530" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E324494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63827" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATT</genome_strand>
        <mrna_strand>TAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAG....................................................................................................................................................................................GTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747432" ref_strand="+" ref_description="SGN-E747432 [GI|47104530]">
      <seq>aaaccagagagtagagtaacagagccgccgtcaaaaatggtgcaacggcttacttaccgtaaacggcatagctatgcaaccaagtcgaaccaacatagggttgtgaaaaccccaggtggaaagctgatttaccagactacgaagaagagggctaatggacctaagtgccctgtaactggaaagagaattcaagggattccacacttgagacctgctgagtacaagagatccaggttatctaggaacaggaggactgtgaaccgtgcttatggtggtgtgttgtccggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagatcgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagagctaagccttgaatcctcgatgatgtcgtgagaggagtttctgatactgcaggtttctaggaaatcatgactgtattttgatttttggtcttgagatttgtatgttgctggtttttcgttaaaatacgatattggaggtctttcttcagtttgtcgaaatatccgttctcctaggtatctctattttcttgttctgaatatttaaacttgttatggatatttgcaacttctattcaattaggctattcgttcccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63530" stop="66767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63830" g_stop="63944" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="195" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="305" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66468" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="648" r_length="343" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="663"/>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E747432" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63830" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTATTCGTTCCA</genome_strand>
        <mrna_strand>AAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAG....................................................................................................................................................................................GTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTATTCGTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300376" ref_strand="+" ref_description="SGN-E300376 [cLET-45-C23]">
      <seq>aaccagagagtagagtaacagagccgtcgtcaaaaatggtgcaacggcttacttaccgtaaacggcatagctatgcaaccaagtcgaaccaacatagggttgtgaaaaccccaggtggaaagctgatttaccagactacgaagaagagggctaatggacctaagtgccctgtaactggaaagagaattcaagggattccacacttgagacctgctgagtacaagagatccaggttatctaggaacaggaggactgtgaaccgtgcttatggtggtgtgttgtccggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagatcgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagagctaagccttgaatcctcgatgatgtcgtgagaggagtttctgatactgcaggtttctaggaaatcatgactgtattttgatttttggtcttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63531" stop="66609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63831" g_stop="63944" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="194" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="304" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66309" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="488" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E300376" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63831" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAG</genome_strand>
        <mrna_strand>AACCAGAGAGTAGAGTAACAGAGCCGTCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAG....................................................................................................................................................................................GTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282349" ref_strand="+" ref_description="SGN-E282349 [cLER-18-A10]">
      <seq>aaccagagagtagagtaacagagccgccgtcaaaaatggtgcaacggcttacttaccgtaaacggcatagctatgcaaccaagtcgaaccaacatagggttgtgaaaaccccaggtggaaagctgatttaccagactacgaagaagagggctaatggacctaagtgccctgtaactggaaagagaattcaagggattccacacttgagacctgctgagtacaagagatccaggttatctaggaacaggaggactgtgaaccgtgcttatggtggtgtgttgtccggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagatcgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagagctaagccttgaatcctcgatgatgtcgtgagaggagtttctgatactgcaggtttctaggaaatcatgactgtattttgatttttggtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63531" stop="66607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63831" g_stop="63944" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="194" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="304" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66307" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="486" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E282349" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63831" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTG</genome_strand>
        <mrna_strand>AACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAG....................................................................................................................................................................................GTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573762" ref_strand="+" ref_description="SGN-E573762 [33124]">
      <seq>accagagagtagagttacagagccgccgtcaaaaatggtgcaacggcttacttaccgtaaacggcatagctatgcaaccaagtcgaaccaacatagggttgtcaaaaccccaggtgggaagctgatttaccagactacaaagaagagggctaatggacctaagtgccctgtaactggaaagagaattcaagggattccacacttaagacctgctgagtacaagaggtccaggttacctagaaacaggaggactgtgaaccgtgcttatggtggtgtgttgtcaggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagattgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagaactaagcatctttaatcctttgatgatgtcgtgagaggagtttctgatactgcaggctactaggaaatcacgactgtattttgatttttggtcttgagatgtatgttgctggttttcgttaaaatacgatattggaggtctttcttcagtttgtcgaaatatctgttctcgtaggtatctctattttcttgttctggatatttaaacttcttatggatatttgcacttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63532" stop="66746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63832" g_stop="63944" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="193" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="303" r_length="110" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66454" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="631" r_length="328" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E573762" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63832" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGC--CTTGAATCC-TCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTA</genome_strand>
        <mrna_strand>ACCAGAGAGTAGAGTTACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTCAAAACCCCAG....................................................................................................................................................................................GTGGGAAGCTGATTTACCAGACTACAAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTAAGACCTGCTGAGTACAAGAGGTCCAGGTTACCTAGAAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCAGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATTGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAACTAAGCATCTTTAATCCTTTGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGCTACTAGGAAATCACGACTGTATTTTGATTTTTGGTCTTGAGA--TGTATGTTGCTGG-TTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCTGTTCTCGTAGGTATCTCTATTTTCTTGTTCTGGATATTTAAACTTCTTATGGATATTTGC-ACTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693032" ref_strand="+" ref_description="SGN-E693032 [LH_Ea10E06]">
      <seq>cagagagtagagtaacagagccgccgtcaaaaatggtgcaacggcttacttatcgtaaacggcatagctatgcaaccaagtcgaaccaacatagggttgtgaaaaccccaggtggaaagctgatttaccagactacgaagaagagggctaatggacctaagtgccctgtaactggaaagagaattcaagggattccacacttgagacctgctgagtacaagagatccaggttatctaggaacaggaggactgtgaaccgtgcttatggtggtgtgttgtccggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagattgttaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagagctaatcctttaatccttgatgatgtcgtgagaggagtttctgatactctgcaggctactaggaaatcatgactgtattttgatttttggtcttgagatttgtatgttgctggtttttcgttaaaatacgatattggaggtctttcttcagtttgtcgaaatatccgttctcctaggtatctctcttttcttgttctgaatatttaaacttgttatggatatttgctcttcaattcaattaggctattcgttgcagttttgaatctcaaatcagtatacatgaatctgtttgttttgatacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63534" stop="66819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63834" g_stop="63944" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="191" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="301" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66518" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="691" r_length="390" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="692" polyA_stop="706"/>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E693032" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63834" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATA--CTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTATTCGTTCCAGTTTTGATTCTTAAATCAGTTTATACTTGAATCTGAGTTTGTTTTGATAC</genome_strand>
        <mrna_strand>CAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTATCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAG....................................................................................................................................................................................GTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATTGTTAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAATCCTTTAATCCTTGATGATGTCGTGAGAGGAGTTTCTGATACTCTGCAGGCTACTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTCTTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGC-TCTTCAATTCAATTAGGCTATTCGTTGCAGTTTTGAATCTCAAATCAG--TATACATGAATCT--GTTTGTTTTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696872" ref_strand="+" ref_description="SGN-E696872 [LH_Ea10E06](-)">
      <seq>cagagagtagagtaacagagccgccgtcaaaaatggtgcaacggcttacttatcgtaaacggcatagctatgcaaccaagtcgaaccaacatagggttgtgaaaaccccaggtggaaagctgatttaccagactacgaagaagagggctaatggacctaagtgccctgtaactggaaagagaattcaagggattccccacttgagacctgctgagtacaagagatccaggttatctaggaacaggaggactgtgaaccgtgcttatggtggtgtgttgtccggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagattgttaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagagctaatcctttaatccttgatgatgtcgtgagaggagtttctgatactctgcaggctactaggaaatcatgactgtattttgatttttggtcttgagatttgtatgttgctggtttttcgttaaaatacgatattggaggtctttcttcagtttgtcgaaatatccgttctcctaggtatctctcttttcttgttctgaatatttaaacttgttatggatatttgctcttcaattcaattaggctattcgttgcagttttgaatctcaaatcaaaggccatgaatctgtttgttttgatacaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63534" stop="66786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63834" g_stop="63944" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="191" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="301" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66486" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="663" r_length="362" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="692" polyA_stop="712"/>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E696872" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63834" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATA--CTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTATTCGTTCCAGTTTTGATTCTTAAATCA</genome_strand>
        <mrna_strand>CAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTATCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAG....................................................................................................................................................................................GTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCCCACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATTGTTAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAATCCTTTAATCCTTGATGATGTCGTGAGAGGAGTTTCTGATACTCTGCAGGCTACTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTCTTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGC-TCTTCAATTCAATTAGGCTATTCGTTGCAGTTTTGAATCTCAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350015" ref_strand="+" ref_description="SGN-E350015 [cTOS-4-E12]">
      <seq>gccgtcaaaaatggtgcaacggcttacttaccgtaaacggcatagctatgcaaccaagtcgaaccaacatagggttgtgaaaaccccaggtggaaagctgatttaccagactacgaagaagagggctaatggacctaagtgccctgtaactggaaagagaattcaagggattccacacttgagacctgctgagtacaagagatccaggttatctaggaacaggaggactgtgaaccgtgcttatggtggtgtgttgtccggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagatcgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagagctaagccttgaatcctcgatgatgtcgtgagaggagtttctgatactgcaggtttctaggaaatcatgactgtattttgatttttggtcttgagatttgtatgttgctggtttttcgttaaaatacgatattggaggtctttcttcagtttgtcgaaatatccgttctcctaggtatctctattttcttgttctgaatatttaaacttgttatggatatttgcaacttctattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63556" stop="66751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63856" g_stop="63944" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="169" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="279" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66459" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="613" r_length="334" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E350015" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63856" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTA</genome_strand>
        <mrna_strand>GCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAG....................................................................................................................................................................................GTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351844" ref_strand="+" ref_description="SGN-E351844 [cTOS-8-E8]">
      <seq>gccgtcaaaaatggtgcaacggcttacttaccgtaaacggcatagctatgcaaccaagtcgaaccaacatagggttgtgaaaaccccaggtggaaagctgatttaccagactacgaagaagagggctaatggacctaagtgccctgtaactggaaagagaattcaagggattccacacttgagacctgctgagtacaagagatccaggttatctaggaacaggaggactgtgaaccgtgcttatggtggtgtgttgtccggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagatcgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagagctaagccttgaatcctcgatgatgtcgtgagaggagtttctgatactgcaggtttctaggaaatcatgactgtattttgatttttggtcttgagatttgtatgttgctggtttttcgttaaaatacgatattggaggtctttcttcagtttgtcgaaatatccgttctcctaggnatctctattttcttgttctgaatatttaaacttgttatggatatttgncacttctattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63556" stop="66749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63856" g_stop="63944" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="169" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="279" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66449" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="603" r_length="324" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E351844" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63856" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTC</genome_strand>
        <mrna_strand>GCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAG....................................................................................................................................................................................GTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGNATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGNCACTTCTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733658" ref_strand="+" ref_description="SGN-E733658 [LB10CD09]">
      <seq>gcatagctatgcaaccaagtcgaaccaacatagggttgtgaaaaccccaggtggaaagctgatttaccagactacgaagaagagggctaatggacctaagtgccctgtaactggaaagagaattcaagggattccacacttgagacctgctgagtacaagagatccaggttatctaggaacaggaggactgtgaaccgtgcttatggtggtgtgttgtccggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagatcgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagagctaagccttgaatcctcgatgatgtcgtgagaggagtttctgatactgcaggtttctaggaaatcatgactgtattttgatttttggtcttgagatttgtatgttgctggtttttcgttaaaatacgatattggaggtctttcttcagtttgtcgaaatatccgttctcctaggtatctctattttcttgttctgaatatttaaacttgttatggatatttgcaacttctattcaattaggctattcgttccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63595" stop="66768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63895" g_stop="63944" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="130" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="240" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66468" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="583" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E733658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63895" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTATTCGTTCCA</genome_strand>
        <mrna_strand>GCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAG....................................................................................................................................................................................GTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTATTCGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351277" ref_strand="+" ref_description="SGN-E351277 [cTOS-6-P1]">
      <seq>aaccaagtcgaaccaacatagggttgtgaaaaccccaggtggaaagctgatttaccagactacgaagaagagggctaatggacctaagtgccctgtaactggaaagagaattcaagggattccacacttgagacctgctgagtacaagagatccaggttatctaggaacaggaggactgtgaaccgtgcttatggtggtgtgttgtccggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagatcgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagagctaagccttgaatcctcgatgatgtcgtgagaggagtttctgatactgcaggtttctaggaaatcatgactgtattttgatttttggtcttgagatttgtatgttgctggtttttcgttaaaatacgatattggaggtctttcttcagtttgtcgaaatatccgttctcctaggtatctctattttcttgttctgaatatttaaacttgttatggatatttgcaacttctattcaattaggctattcgttccagttttgattcttaaatcagtttatacttgaatctgagtttgntttgatacattttcaatctctatgaaatcatgttttacatctggtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63607" stop="66859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63907" g_stop="63944" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64125" g_stop="64204" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="118" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="228" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66126" g_stop="66562" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="665" r_length="437" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E351277" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63907" e_stop="63944"/>
          <exon e_start="64125" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAGGTATGGTTTATTATTTGTTGTTGCATTTCTTGTTTTTTATCTGTGGGGTTAGTTGAGGTGCGTGAAAGATGAGGAAAAGGAAAAAGATGTGTTTTTTTTATGGGATGTGGGTGTTTGGATATTGAAGAAAGTTTGTGCTTTTTTTGTGTTTGGATGTTTGAAAAATTGAATTTTGAATAGGTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTATTCGTTCCAGTTTTGATTCTTAAATCAGTTTATACTTGAATCTGAGTTTGTTTTGATACATTTTCAATCTCTATGAATCAATGTTTTACATCTGTTAATACTG</genome_strand>
        <mrna_strand>AACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAG....................................................................................................................................................................................GTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTATTCGTTCCAGTTTTGATTCTTAAATCAGTTTATACTTGAATCTGAGTTTGNTTTGATACATTTTCAATCTCTATGAAATCATGTTTTACATCTGGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299261" ref_strand="+" ref_description="SGN-E299261 [cLET-43-K12]">
      <seq>aagagggctaatggacctaagtgccctgtaactggaaagagaattcaagggattccacacttgagacctgctgagtacaagagatccaggttatctaggaacaggaggactgtgaaccgtgcttatggtggtgtgttgtccggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagatcgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagagctaagccttgaatcctcgatgatgtcgtgagaggagtttctgatactgcaggtttctaggaaatcatgactgtattttgatttttggtcttgagatttgtatgttgctggtttttcgttaaaatacgatattggaggtctttcttcagtttgtcgaaatatccgttctcctaggtatctctattttcttgttctgaatatttaaacttgttatggatatttgcaacttctattcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63854" stop="66751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64154" g_stop="64204" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="161" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66126" g_stop="66450" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="486" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="487" polyA_stop="500"/>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E299261" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64154" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCA</genome_strand>
        <mrna_strand>AAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419355" ref_strand="-" ref_description="SGN-E419355 [STM-29-O10]">
      <seq>aagtgccctgtaactggaaagagaattcaagggattccacacttgagacctgctgagtacaagaggtccaggttacctagaaacaggaggactgtgaaccgtgcttatggtggtgtgttgtcaggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagattgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagaactaagcctttaatccttgatgatgtcgtgagaggagtttctgatactgcaggctactaggaaatcatgactgtatttggatttttggtcttgagatttgtatgttgctggttttcgttaaaatacgatattggaggcctttcttcagtttgtcgaaatatctgttctcgtaggtatctttattttcttcgttctggatatttaaacttcttatggatatttgcactttaattcaaaaaaaagaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="63872" stop="66751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64172" g_stop="64204" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="143" r_length="110" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66126" g_stop="66450" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="467" r_length="324" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="468" polyA_stop="484"/>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E419355" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419355" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64172" e_stop="64204"/>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGCCCTGTAACTGGAAAGAGAATTCAAGGGGTATGTTTTTTTTGCTGTTTTATTTTGTGTTCATACTGTTTTTAATGAATGTCGTTGGTAGATATTGATTGGTCTGTTTGCAAATACTGTTATTTCTGGAATGTGTTTGCGTCTGATGATAGAATTGTGCTCAGGTAGAAATCCTGTTATCTATTATGAGTATTAGATTTATCTTGGATGTGCTGATTCTAAACCATCCTGGAACTGAGTTTTTATCAGAAAGAGCCTCTCTACTGACCAATGTAAGGGGTAAGATTTGCGTAAACACTGCACTCCCTCGACCCACTTTTAGGTTTGGGATTGCACTTGGTGCGTTGTTGTTGTGTTGATCCTATGCCACAGTTTGCTAATGAGTACTAATATTTGCTAGTTTGGAGTGGATTATAATGAGGTATAATAACTGTATATTTGATATTGCAAGGAATGGACCTGTACAGGGAGTAATGATTATAGAAGACTGATGAAACCTGACTTATTTGGGGTTAACTTGTAGTTGATTGATCCATCTATTTGTGATCTAATTGATTTATTATTTAATAGAGAATAAATTAAAGACTTGAGTTTTCAGCTCTCTGGAAATGTATGGTAGTGTTAATATAACATAACTTTGCTGTGGAATTCAGGATAGTATTGGTTATTGTGACTTACCTGGATAACCGTATGTGTTTTGAATATCAATCCAAAGGGAACATTTTTCTTGTACTATTATCAGCATCTTTGGGTAAAAAAATCCAATGATAGATTGTGTTGGGAGAAAGCTATTCATAGTTGGTGCGGACGATGCGTTGCATTTGGAATTGTCAAACTATTTCGGGTCATGTTTGACTTTACTTCTTAGCAATCTCATATTAACCTTTCCTGTGCGTGTAATTTAATTTGTAAGTTCTTTTGGCTTATACGTCAGCTATTCCCTCAAGAATAGCATGTAATTTGCTGATAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCGCATCACGTAACACATGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTT-GTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCA</genome_strand>
        <mrna_strand>AAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACACTTGAGACCTGCTGAGTACAAGAGGTCCAGGTTACCTAGAAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCAGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATTGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAACTAAGCCTTTAATCCTTGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGCTACTAGGAAATCATGACTGTATTTGGATTTTTGGTCTTGAGATTTGTATGTTGCTGG-TTTTCGTTAAAATACGATATTGGAGGCCTTTCTTCAGTTTGTCGAAATATCTGTTCTCGTAGGTATCTTTATTTTCTTCGTTCTGGATATTTAAACTTCTTATGGATATTTGC-ACTTTAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375015" ref_strand="+" ref_description="SGN-E375015 [TUS-36-I17]">
      <seq>taggttatctttgtgactcctgataacatgatttaactatatgacatcttatttaacatgcagtttttcaatatagagaaatggatgaagttatccctctattgtgcaaaatatactcattttactttatcctttatattttggtgccatcatacccttgccgttgagctctagcatagacagagtgcattccacttccacctttgaaattactttggtataaaggttgaaatttcgcctctatacttgctattgttttaaaataccctctattatacttcaagttggaacctaataggctgcaaatccgagacaatttgcttgcacaagtgtatgataacctcatcaagctgtgcctgattatcaatgttatacaaaaaagtgtatgagtcccaagtataacaaagggtaaagcgtttttggtcaacttccctttattaaatgtattatgcctaaatgcatctcaatttatttttatgtacttctacaatatcatcagtgtaacattttctaatggtttgaggcagattacttcctcatcaactaacagatgttctctgtagctatcagtgcatctcaaaaaaaaaatttcatgtacctagaatattatcagtgtaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="64842" stop="66062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65142" g_stop="65762" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E375015" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65142" e_stop="65762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACAT</genome_strand>
        <mrna_strand>TAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233141" ref_strand="+" ref_description="SGN-E233141 [cLED-6-A2]">
      <seq>taggttatctttgtgactcctgataacatgatttaactatatgacatcttatttaacatgcagtttttcaatatagagaaatggatgaagttatccctctattgtgcaaaatatactcattttactttatcctttatattttggtgccatcatacccttgccgttgagctctagcatagacagagtgcattccacttccacctttgaaattactttggtataaaggttgaaatttcgcctctatacttgctattgttttaaaataccctctattatacttcaagttggaacctaataggctgcaaatccgagacaatttgcttgcacaagtgtatgataacctcatcaagctgtgcctgattatcaatgttatacaaaaaagtgtatgagtcccaagtataacaaagggtaaagcgtttttggtcaacttccctttattaaatgtattatgcctaaatgcatctcaatttatttttatgtacttctacaatatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="64842" stop="65937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65142" g_stop="65637" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E233141" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65142" e_stop="65637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCAT</genome_strand>
        <mrna_strand>TAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236312" ref_strand="+" ref_description="SGN-E236312 [cLED-20-J11]">
      <seq>taggttatctttgtgactcctgataacatgatttaactatatgacatcttatttaacatgcagtttttcaatatagagaaatggatgaagttatccctctattgtgcaaaatatactcattttactttatcctttatattttggtgccatcatacccttgccgttgagctctagcatagacagagtgcattccacttccacctttgaaattactttggtataaaggttgaaatttcgcctctatacttgctattgttttaaaataccctctattatacttcaagttggaacctaataggctgcaaatccgagacaatttgcttgcacaagtgtatgataacctcatcaagctgggcctgattatcaatgttatacaaaaaagtgtatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="64842" stop="65832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65142" g_stop="65532" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E236312" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65142" e_stop="65532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGT</genome_strand>
        <mrna_strand>TAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGGGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375014" ref_strand="+" ref_description="SGN-E375014 [TUS-36-I17](-)">
      <seq>tgttctctgtagctatcagcagttaatattttaaacatgaatgcaaatgcctactgcttttgattgtatagttgttttaggagtcatcatttcaatggcttaaagacttctctttttgcagattccacacttgagacctgctgagtacaagagatccaggttatctaggaacaggaggactgtgaaccgtgcttatggtggtgtgttgtccggcagtgctgtacgtgaaaggtatagttttggtccactagagtgttctcaaaccgtttaaacaaaattagtgttcttccaactcactagatgttttcttgtacaacaggatcatcagagcctttttggttgaagaacaaaagatcgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagagctaagccttgaatcctcgatgatgtcgtgagaggagtttctgatactgcaggtttctaggaaatcatgactgtattttgatttttggtcttgagatttgtatgttgctggtttttcgttaaaatacgatattggaggtctttcttcagtttgtcgaaatatccgttctcctaggtatctctattttcttgttctgaatatttaaacttgttatggatatttgcaacttctattcaattaggctattcgttccagttttgattcttaaatcagtttatacttgaatctgagtttgttttataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="65507" stop="66819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65807" g_stop="66519" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E375014" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65807" e_stop="66519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTATTCGTTCCAGTTTTGATTCTTAAATCAGTTTATACTTGAATCTGAGTTTGTTTTGATACA</genome_strand>
        <mrna_strand>TGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTATTCGTTCCAGTTTTGATTCTTAAATCAGTTTATACTTGAATCTGAGTTTGTTTT-ATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347088" ref_strand="+" ref_description="SGN-E347088 [cTOF-25-H4]">
      <seq>gattccacacttgagacctgctgagtacaagagatccaggttatctaggaacaggaggactgtgaaccgtgcttatggtggtgtgttgtccggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagatcgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagaactaagccttgaatcctcgatgatgtcgtgagaagagtttctgatactgcagggttctatgaaatcatgactgtattttgatttttgggcttgagatattgtatgtggctggtttttcgttaaaatacaatattggaggtctttcttcaatttgtcgaaatatccgctctcctagagatctctattttcttgtgctgaatatttaaactcgttatggatatttgcaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="65627" stop="66744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65927" g_stop="66037" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66126" g_stop="66444" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="431" r_length="320" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E347088" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65927" e_stop="66037"/>
          <exon e_start="66126" e_stop="66444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGAT-TTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTC</genome_strand>
        <mrna_strand>GATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAACTAAGCCTTGAATCCTCGATGATGTCGTGAGAAGAGTTTCTGATACTGCAGGGTTCTATGAAATCATGACTGTATTTTGATTTTTGGGCTTGAGATATTGTATGTGGCTGGTTTTTCGTTAAAATACAATATTGGAGGTCTTTCTTCAATTTGTCGAAATATCCGCTCTCCTAGAGATCTCTATTTTCTTGTGCTGAATATTTAAACTCGTTATGGATATTTGCAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350183" ref_strand="+" ref_description="SGN-E350183 [cTOS-4-E8]">
      <seq>agaattcaagggattccacacttgagacctgctgagtacaagagatccaggttatctaggaacaggaggactgtgaaccgtgcttatggtggtgtgttgtccggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagatcgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagagctaagccttgaatcctcgatgatgtcgtgagaggagtttctgatactgcaggtttctaggaaatcatgactgtattttgatttttggtcttgagatttgtatgttgctggtttttcgttaaaatacgatattggaggtctttcttcagtttgtcgaaatatccgttctcctaggtatctctattttcttgttctgaatatttaaacttgttatggatatttgcaacttctattcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="65627" stop="66751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65928" g_stop="66037" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="122" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66126" g_stop="66450" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="447" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="460"/>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E350183" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65928" e_stop="66037"/>
          <exon e_start="66126" e_stop="66450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCA</genome_strand>
        <mrna_strand>ATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346621" ref_strand="+" ref_description="SGN-E346621 [cTOF-28-H16]">
      <seq>acaccttgagaccctgctgagtaccaagagttccaggttatctaggaaccaggaggactgtgaaccgtgcttatggtggtgtgttgtccggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagatcgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagagctaagccttgaatcctcgatgatgtcgtgagaggagtttctgatactgcaggtttctaggaaatcatgactgtattttgatttttggtcttgagatttgtatgttgctggtttttcgttaaaatacgatattggaggtctttcttcagtttgtcgaaatatccgttctcctaggtatctctattttcttgttctgaatatttaaacttgttatggatatttgcaacttctattcaattaggctatttcgttccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="65633" stop="66768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65931" g_stop="66037" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66126" g_stop="66468" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="453" r_length="344" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="464"/>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E346621" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65931" e_stop="66037"/>
          <exon e_start="66126" e_stop="66468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACACTTGAGA-CCTGCTGAGTA-CAAGAGATCCAGGTTATCTAGGAA-CAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTA-TTCGTTCCA</genome_strand>
        <mrna_strand>ACAC-CTTGAGACCCTGCTGAGTACCAAGAGTTCCAGGTTATCTAGGAACCAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTATTTCGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279171" ref_strand="-" ref_description="SGN-E279171 [cLEL-4-B14](-)">
      <seq>ggccacgagctgagtacaagagatccaggttatctaggaacaggaggactgtgaaccgtgcttatggtggtgtgttgtccggccgtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagatcgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagagctaagccttgaatcctcgatgatgtcgtgagaggagtttctgatactgcaggtttctaggaaatcatgactgtattttgatttttggtcttgagatttgtatgttgcntggtttttcgttaaaatacgatttgggagggtctttcttcaagtttgtcgaaatattccgttctccttangtatctctattntccttgttctgaatatttaaacttggttatggatatttgcaacttctattcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="65642" stop="66751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65938" g_stop="66037" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66126" g_stop="66451" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="433" r_length="333" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E279171" ref_strand="-">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279171" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65938" e_stop="66037"/>
          <exon e_start="66126" e_stop="66451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGC-TGGTTTTTCGTTAAAATACGATATTGGAG-GTCTTTCTTC-AGTTTGTCGAAATA-TCCGTTCTCC-TAGGTATCTCTATTTT-CTTGTTCTGAATATTTAAACTT-GTTATGGATATTTGCAACTTCTATTCAA</genome_strand>
        <mrna_strand>GGCCACGAGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCCGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCNTGGTTTTTCGTTAAAATACGATTTGGGAGGGTCTTTCTTCAAGTTTGTCGAAATATTCCGTTCTCCTTANGTATCTCTATTNTCCTTGTTCTGAATATTTAAACTTGGTTATGGATATTTGCAACTTCTATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459895" ref_strand="+" ref_description="SGN-E459895 [cPRO-29-E12]">
      <seq>gagacctgctgagtacaagaggtccaggttacctagaaacatgaggactgtgaaccgtgcttatggtggtgtgttgtcaggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagattgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagaactaagcctttaatacttgatgatgtcgtgagaggagtttctgatactgcaggctactaggaaatcatgactgtatttggatttttggtcttgagatttgtatgttgctggttttcgttaaaatacgatattggaggtctttcttcagtttgtcgaaatatctgttctcgtaggtatctttattttcttgttctggatatttaaacttcttatggatatttgcacttcaattcaactaggctattcgttccagttttgaatctcaaatcagtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="65639" stop="66791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65939" g_stop="66037" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66126" g_stop="66491" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="463" r_length="364" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E459895" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65939" e_stop="66037"/>
          <exon e_start="66126" e_stop="66491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTATTCGTTCCAGTTTTGATTCTTAAATCAGTTTA</genome_strand>
        <mrna_strand>GAGACCTGCTGAGTACAAGAGGTCCAGGTTACCTAGAAACATGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCAGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATTGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAACTAAGCCTTTAATACTTGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGCTACTAGGAAATCATGACTGTATTTGGATTTTTGGTCTTGAGATTTGTATGTTGCTGG-TTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCTGTTCTCGTAGGTATCTTTATTTTCTTGTTCTGGATATTTAAACTTCTTATGGATATTTGC-ACTTCAATTCAACTAGGCTATTCGTTCCAGTTTTGAATCTCAAATCAGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356841" ref_strand="+" ref_description="SGN-E356841 [cTOS-22-G7]">
      <seq>ggaggactgtgaaccgtgcttatggtggtgtgttgtccggcagtgctgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagatcgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaagagctaagccttgaatcctcgatgatgtcgtgagaggagtttctgatactgcaggtttctaggaaatcatgactgtattttgatttttggtcttgagatttgtatgttgctggtttttcgttaaaatacgatattggaggtctttcttcagtttgtcgaaatatccgttctcctaaggatctctattttcctggtctgaatatttaaacttggtatggatatttgccacttctattccnnnnaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="65680" stop="66749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65980" g_stop="66037" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66126" g_stop="66450" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="383" r_length="325" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="407"/>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E356841" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65980" e_stop="66037"/>
          <exon e_start="66126" e_stop="66450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCA</genome_strand>
        <mrna_strand>GGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAAGGATCTCTATTTTCCTGGTCTGAATATTTAAACTTGGTATGGATATTTGCCACTTCTATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223998" ref_strand="+" ref_description="SGN-E223998 [cLEL-19-P17](-)">
      <seq>tgtacgtgaaaggatcatcagagcctttttggttgaagaacaaaagatcgtgaagaaggttttgaagatccagaaagccaaggaaaagctagcatccaatagctaagccttgaatcctcgatgatgtcgtgagaggagtttctgatactgcaggtttctaggaaatcatgactgtattttgatttttggtcttaagatttgtatgttgctggtttttcgttaaaatacgatattgaaggtctttcttcagtttgtcgaaatatccgttctcctaggtatctctattttcttgttctgaatatttaaacttgttatggatatttgcaacttctattcaattaggctattcgttccagttttgattcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="65821" stop="66783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66026" g_stop="66037" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66126" g_stop="66482" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="369" r_length="357" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="370" polyA_stop="384"/>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E223998" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66026" e_stop="66037"/>
          <exon e_start="66126" e_stop="66482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTATTCGTTCCAGTTTTGATTCTTAA</genome_strand>
        <mrna_strand>TGTACGTGAAAG........................................................................................GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAATAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTAAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGAAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTATTCGTTCCAGTTTTGATTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223849" ref_strand="+" ref_description="SGN-E223849 [cLEL-19-P17](-)">
      <seq>agctagcatccaagagctaagccttgaatcctcgatgatgtcgtgagagaagtttctgaaactgcaggtttctaggaaatcatgactgtattttgatttttggtcttgagatttgtatgttgctggtttttcgttaaaatacgatattggaggtctttcttcagtttgtcgaaatatccgttctcctaggtatctctattttcttgttctgaatatttaaacttgttatggatatttgcaacttctattcaattaggctattcgttccagttttgattcttacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="65900" stop="66783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66200" g_stop="66482" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="284" polyA_stop="298"/>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E223849" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66200" e_stop="66482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTATTCGTTCCAGTTTTGATTCTTAA</genome_strand>
        <mrna_strand>AGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGAAGTTTCTGAAACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTATTCGTTCCAGTTTTGATTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458589" ref_strand="+" ref_description="SGN-E458589 [cPRO-6-A12]">
      <seq>cttataaacttttcttcttcaacaacaacaacaatattagggtttcatcaatagttagttttacttaaacaagttttgtttttgtttaggaaaaaagattgtgtaaggtaggtaggtattagggtttgttctatatttttgtgatcttttagggttttaatggaagagagaaatgataaagagaaaaatatggatgaagtgatgcttccagggtttaggtttcatccaactgatgaagagttagtagggttttatctaaggaggaaagttcaacaaaaaccaatatccattgaacttatcaagcaacttgatatctataaatatgatccatgggatctaccaaagttggcagcagtgggagaaaaagaatggtatttttattgtccaagggatagaaaatacagaaatagtgcaaggccaaatagagtaactggagctggtttttggaaagcaacaggtactgataggccaatttattcatctgaaggatcaaaatgtattggcttgaaaaaatcacttgttttctacaaaggaagagctgcaaaagggattaaaactgattggatgatgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="71549" stop="69881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71249" g_stop="70903" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70902" i_stop="70412" i_length="491">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70411" g_stop="70181" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="574" r_length="231" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E458589" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71249" e_stop="70903"/>
          <exon e_start="70411" e_stop="70181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATAAACTTTTCTTCTTCAACAACAACAACAACAATATTAGGGTTTCATCAATAGTTATAAGTTTTACTTAAACAAGTTTTGTTTTTGTTTAGTAAAAAAAGGTTGTGTAAGGTAGGTAGGTGTATTAGGGTTTGTTCTA-----TTG-G-TCTTTTAGGGTTTTTTAATGGAAGAAAGAAATGATAAAGAGAAAAATATGGATGAAGTGATGCTTCCAGGGTTTAGGTTTCATCCAACTGATGAAGAATTAGTAGGGTTTTATCTAAGGAGGAAAGTTCAACAAAAACCAATATCTATTGAACTTATCAAGCAACTTGATATCTATAAATATGATCCATGGGATCTACCAAGTAAGACTACATATCATATATCCATCTTCATGCTTCTTCTTTGCTTTGTTTTCTATCCAGTGTCCAGTACTCGTATTAGAATCTGACTATATCTGAATCGCGTGTTACAAGGTCCATTGCATTTTTCATATTTAGGGCTCAAACTCTACTTAAATCTGACTCGTATTATTATTTTTCAAACAAAATAATAATACTAAGCTTGTTTGTAAAATGTTATAGCTTTTGCATCAAGACTTCATTGGGTTTTTACTACTTTGTTTTTTTTGGATTTAACTCATATATACACACGATCAGTATAATTTAACATGTTATAACAGATAATATGTTTGACTTTTCAAGGTGTGAATACCTTTTGTAATTATTTTTTTACATAAAAGTTTAGCTTGTATATACTGACAATAATGTTTATTTACAAATAATTTTTTTTTTTAATTATGTCCTTATAAGATGAAACATAGGTAACAACTCTTTTGTTGTTTTTTTCTTAGCAGAGTTGGCAGCAGTGGGAGAAAAAGAATGGTATTTTTATTGTCCAAGGGATAGAAAATATAGAAATAGTGCAAGACCAAATAGAGTAACTGGAGCTGGTTTTTGGAAAGCAACAGGTACTGATAGGCCAATTTATTCATCTGAAGGATCAAAATGTATTGGATTGAAAAAATCACTTGTTTTCTACAAAGGAAGAGCTGCAAAAGGGATTAAAACTGATTGGATGATGCATG</genome_strand>
        <mrna_strand>CTTATAAACTTTTCTTCTTCAACAACAACAACAA---TATTAGGGTTTCATCAATAG-T-T-AGTTTTACTTAAACAAGTTTTGTTTTTGTTTAG-GAAAAAAGATTGTGTAAGGTAGGTA-G-GTATTAGGGTTTGTTCTATATTTTTGTGATCTTTTAGGG--TTTTAATGGAAGAGAGAAATGATAAAGAGAAAAATATGGATGAAGTGATGCTTCCAGGGTTTAGGTTTCATCCAACTGATGAAGAGTTAGTAGGGTTTTATCTAAGGAGGAAAGTTCAACAAAAACCAATATCCATTGAACTTATCAAGCAACTTGATATCTATAAATATGATCCATGGGATCTACCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGCAGCAGTGGGAGAAAAAGAATGGTATTTTTATTGTCCAAGGGATAGAAAATACAGAAATAGTGCAAGGCCAAATAGAGTAACTGGAGCTGGTTTTTGGAAAGCAACAGGTACTGATAGGCCAATTTATTCATCTGAAGGATCAAAATGTATTGGCTTGAAAAAATCACTTGTTTTCTACAAAGGAAGAGCTGCAAAAGGGATTAAAACTGATTGGATGATGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744821" ref_strand="+" ref_description="SGN-E744821 [GI|4038591]">
      <seq>gaaatattctttacttacttcaccagggattgactcatcactcccctcaagtctttgtgtgttgtgataataaatttggttgtgcttcagtttcagtcactactgctgggtagtttttattttgcataacttcagggggtattccagttggtgttagcatttgaaagtcgaactgcacttggaatttggctacatgggaaagacaattcaggttttcggattcccttatcttctctctgcggaagtggttaagtcattcttagagaaatatacaggatatggaactgtatgtgcattggaggttaaacagtccaaaggaggatctagagcatttgccaaagttcaatttgccgacaacataagtgctgacaaaatcatcactttggctaataacaggctgtattttggctcttcttatttgaaggcttgggaaatgaaaactgatattgtccaactgcgggcatatgtggatcagatggatggcataactttgaatttcggatgtcagatatcagatgacaagtttgcagtgttgggaagtacagaagtttcaattcaatttggcattggattgaagaaattttttttctttttatctagtggttcagctgactataaacttcagctttcatatgaaaatatatggcaggttgtgctccatcgtccatatggtcaaaatgctcagtttctcctcatacagttatttggtgctcctcggatctataagagacttgaaaactcctgttatagcttctttaaggaaactcctgatgatcagtgggtgaggacaacagatttccctccatcttggatagggctatcttctagcttatgtttgcagttccgtaggggtgttcgtcttccaaatttcgaggaaagttttttccactatgcagaacgtgaaaacaatattactttacagactggtttcacctttttcgtctctcaaaaatcggctctggttcccaatgtccagcctccggaaggaatttcaattccctacaagattttgttcaaaattagttctttggtacagcatggatgcatacctgggccagcattaaatgtctactttttccgattagttgatcctcgaaggagaaatgtggcatgcattgagcatgccttagagaaactgtactatataaaggagtgctgttatgatccggtgaggtggctcactgagcagtatgatgggtatctcaagggtagacaacctccaaaatctccgtccatcactttagatgatgggttggtgtatgtaagaagggtcctagtaacaccatgcaaagtttatttttgtggtccagaggttaatgtttccaatcgggttctccgcaattattctgaagacatagataactttcttcgtgtttcttttgttgatgaggagtgggagaaactgtattctacagacttattaccaaaagcaagtactggaagtggtgtcaggacaaacatctatgagaggatcttatcaactctgcggaaaggctttgtaattggtgataaaaaatttgaatttcttgcattttcatcgagccagttgcgggataattcagtgtggatgtttgcatcaagacctggccttactgcaaatgatataagagcttggatgggtgatttttcgcagatcaagaatgtcgcaaaatatgctgccagacttggtcaatcttttggttcctccagagagactttgagtgttcttaggcatgagattgaagttattcccgatgtaaaggttcatggaaccagctatgtcttttctgatggaattggtaaaatatctggtgactttgctcatagagttgcctcaaaatgtggccttcaatataccccatctgctttccagattcgttatggtggatataaaggtgttgtgggtgttgatccggattcatcaatgaagttgtctttgagaaagagcatgtcgaaatatgaatcagacaacataaagttagatgtccttggatggagcaaatatcagccttgttatcttaatcgtcaactgattacgctcttgtctacacttggagtgaaagatgaagttctcgaacagaagcaaaaggaagctgtagatcagcttgatgctatcttgcatgattctttgaaggcacaggaggctttggaattgatgtctcctggagagaacactaatattctcaaggcaatgctaaactgtggttataagcctgatgctgagccctttctttcaatgatgttgcaaaccttccgcgcatccaagttgctcgatttgcggactagatcaagaatatttattccaaatggaagaacaatgatgggatgtttggatgaatccagaaccttggaatatggtcaggtgtttgttcagtttactggtgctggacatggagagttttctgacgatttacatccatttaataacagcagatccaccaacagtaatttcattctgaagggaaatgtggttgttgcaaaaaatccatgcttgcatcctggtgatattcgtgttttaaaggctgtaaatgttcgagcgctgcaccacatggtagattgtgttgtattccctcagaaaggaaaaagacctcatccgaatgaatgttctgggagtgatttggatggggatatctactttgtttgctgggatcaagacatgatcccgccaaggcaagtccagccgatggaatatcctccagcacccagcatacagttggaccatgatgtcacaattgaggaagttgaagagtacttcaccaactatattgtgaatgacagtttgggaatcatagcaaatgcccatgtcgtatttgcagacagagaacctgatatggccatgagtgatccatgcaaaaaacttgctgagctcttttcaattgcagtggactttccaaagactggtgttcccgctgaaataccatctcagttgcgccctaaagaatacccagacttcatggataagccggacaagaccagctatatctcagaaagagttattggaaagcttttcaggaaagtgaaggacaaagcacctcaggctagctctatcgcgaccttcacaagagatgttgcaaggagatcatatgatgctgatatggaagttgatggatttgaagattacattgacgaagcttttgactacaaaactgaatatgacaacaagctgggtaatttaatggactactatggcataaaaacagaggctgaaatacttagtggtggcattatgaaggcatcaaaaacttttgaccgcagaaaagatgctgaggccattagtgttgctgtgagggccttgaggaaggaggcaagagcctggttcaagaggcgtaatgatatagatgacatgttaccaaaggcttcggcttggtaccacgttacatatcatcctacatattggggttgctacaatcaggggttgaaaagagctcatttcattagctttccctggtgtgtttatgaccagctaatccagattaagaaggacaaagcacgtaacaggccagttctcaacttgtcatctctcagggctcaactgagtcacagattagtgttgaaatgagattccagtcgagcgttaagctgatatatatataatgtaatagggtgtgatcataagaaaactgttatgcattgttgactaccttttgtctttaaaactgcatgaagctgcaacatatatgcagtactctaagaaacagatgtacagctaagtactaatatgtatgtgatttgagtttcatctttcttctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="95726" stop="105147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96026" g_stop="96153" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96154" i_stop="97442" i_length="1289">
            <donor d_prob="0.754" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97443" g_stop="98014" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="700" r_length="572" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98015" i_stop="100712" i_length="2698">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100713" g_stop="102577" g_length="1865"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="2565" r_length="1865" r_score="0.999"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102578" i_stop="103212" i_length="635">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103213" g_stop="103363" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="2566" r_stop="2716" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103364" i_stop="103832" i_length="469">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103833" g_stop="104847" g_length="1015"/>
          <reference_exon_boundary r_type="cDNA" r_start="2717" r_stop="3731" r_length="1015" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E744821" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>3731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96026" e_stop="96153"/>
          <exon e_start="97443" e_stop="98014"/>
          <exon e_start="100713" e_stop="102577"/>
          <exon e_start="103213" e_stop="103363"/>
          <exon e_start="103833" e_stop="104847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATATTCTTTACTTACTTCACCAGGGATTGACTCATCACTCCCCTCAAGTCTTTGTGTGTTGTGATAATAAATTTGGTTGTGCTTCAGTTTCAGTCACTACTGCTGGGTAGTTTTTATTTTGCATAGTAAGTTACTTTCTCAAAGCCCCATGTGAAATTTTGCTTTGATTCAGTTTATTTTGTGTTGTTTATGTGTTTGAGGCTGTTGCGTAGCTGTTTTCTTGGTTTGTGTGTTCTATTGTTGTTTAAAGTTTGGATCTTTTTCATTGTTTTGTGAGTCTGACTGAATGTATATGATCGTGGGTGGTGAAATTTCTGTAAAATTCCTGATGGAAAGAATGTTTTAACTAATGTTACTAGTATGTTATTTGTTGATCATTAGCTTTAGAAGAAGCAGAACGAAAAGTTCACTTTAAAGAAGAAAAAAAAAAGAGACTTTGTCATCTGTGCAAAAAGCTGTATAAAAGAGAGTGTAAAACCTTTAGATATGGCTTGAGGTAGTAGTAATTTGCTAGACTGGTTAAAGTCAAGAAACCCTATTTAGCTAGATGATTGACTTAAATTGGGGTTGAGTTAGGTTCAAGTGTTTGTATCTTTACATGATAGATATCAGTGTTAGGTTCATCTTATTTGGGGTCCCATGTGAGCTCTTGTTGGGGAATGGATTGGTGATCATATCTTACCTGGTATCTGAGTTAGGTCCATCATGTTTAGGCTCCCGATGCATACTACAATTGGGCTTGCGCACAAAAGGATGTTAGAGTGGGACCCACATTGGTTGGAAATTCATTGGTGGTTGGTTTGTATGGACTTGGACAATCTTTTCCTTGTGAGTTAATCTTTTGGAGTTGAGTTAGGCCTAAGTGTCATATCTTAATAGGCCAAAAAATCTCAAATGTGTACATCAATTAGGTTGATTTCTCTTTTGATTCGTCTTGCTGTATTTAGTGGTCAAAAAGCCTACATTTTTCATGTCTCAGACGTCTGGAAAATGTATCAAATGGGTATCTAGTAGTTTGCTGTATTCCTTTATATAGTTAGTCATAATTTTGCGTAACTTTGTGGAGTCTAGTTTTCAGCACCTTAGAGTGAGCATACTTTTAGATATCTTGCTTATGCAGCAGTTTAGTTGCTCACATATTCGACAGATGTGAAGCTCTGGGTTGTCCTCTAGTGAAGGTATGGGGAGAGCACAAAAAATAAATAGTTCAATGATCTTGCTTTTAAGTTCAATGGGTATGTGTGAAATATTGAGGATGCAGCTAAATTTGAATTGCATAGCATGTAGGATTCTCCTTTACCTAGTAACTTTTGGCTCTTCTTTTACCTAATATGGTGACACTTGTACCTTAATCTTGTAATTTCATTCCTTCGTTCTTTACAATTATTCTTACTTGTGTTACATCTGTATGTAGACTTCAGGGGGTATTCCAGTTGGTGTTAGCATTTGAAAGTCGAACTGCACTTGGAATTTGGCTACATGGGAAAGACAATTCAGGTTTTCGGATTCCCTTATCTTCTCTCTGCGGAAGTGGTTAAGTCATTCTTAGAGAAATATACAGGATATGGAACTGTATGTGCATTGGAGGTTAAACAGTCCAAAGGAGGATCTAGAGCATTTGCCAAAGTTCAATTTGCCGACAACATAAGTGCTGACAAAATCATCACTTTGGCTAATAACAGGCTGTATTTTGGCTCTTCTTATTTGAAGGCTTGGGAAATGAAAACTGATATTGTCCAACTGCGGGCATATGTGGATCAGATGGATGGCATAACTTTGAATTTCGGATGTCAGATATCAGATGACAAGTTTGCAGTGTTGGGAAGTACAGAAGTTTCAATTCAATTTGGCATTGGATTGAAGAAATTTTTTTTCTTTTTATCTAGTGGTTCAGCTGACTATAAACTTCAGCTTTCATATGAAAATATATGGCAGGTTGTGCTCCATCGTCCATATGGTCAAAATGCTCAGTTTCTCCTCATACAGGTTTTTCAATTATTCCAAACCTTAACTTTTGTTTTCATCCTTCTCCCTGTGCCTGGTCTTTGTGAATATTGTGACTATTTGATTATTGGTTGAATGCTACACAATTCTCATGTATTGGGTCTCTTACTGTTTGTTGATCCACTTCTTTTGAAGCAAAATCATTTCTGCTAAGATATATTTATTTGTTGACTTCTGAACCAAATGGAAGGGGTTGAAATCCTATTTATGAGAATTTTGATCATAAATTCCATTTCTAGAAACTGAACATGCATGAAGGCTTGAACCGACATTAAACTGGAAACTTACTAGCTACAGATCATGAAGCAAAGAAGCTTTAGAAATTACAAAGTACAAGCTCATAAGCATTAATAGCGGTTAGGCCCTCCCCGATATTGTTCTGCTTAAAGTCTTTTAAGGTTGGATGCTTGTGCGTTTATAAGCACTGCTATGTGGATAACCTAGCATCCTGTCCTAAATCCTAACTAACATGCCAGATTACCATATTCTCAGCCTATGTTTTGATGTGTCAACATCCTTTTCGTTTATAAGAATATCTGTTGACATCCTTAAAGCTGAATGTTTGAAATTCTTAACCTCTTTCATGAATATTTGCACTAGAACTTTTTTTTATCTAGTAAAATACCATGAAATGGTACTGTCAACATCCAGATTTTTGAGGAAAATGTCTTTCATTTTTTTGAGCAGATTTTTCCATCAAAGTTATAAAATGTTGATTTTCTGTTTTTTTTTTTTTGGTAAAGTAATTAAATTGTGTTGATTTTCTGTTAATATGCACTCCTATTTTAAATTTAGAAATTACTATTTCTACTGTTAATTTGAGAGAGACAGAAGAGCTTCTTGTCGTCCTGTCTACCAAACAAACGTATAATTTTGGAATTTTCCTTTTGAGTTCGCTATTTTCTTATTGCACTTCACGTAGCCGCGATAGATATCAGACGGAAGAAACAAACTAGGCTGTGCATTGAGACAAAATCATGTGCTTTTATTTTATCTGGTTAGCTTAGGAAGGTGTTTTCTGTACTTGTGTATTCATTGTCTTTTCTCATTGGTGGATATAGATGGCTTACTGTAGCTTCTTTTTTAAAAAAAATTGATGTGCTGACTGTTTTATCCTCTTTAGTTTGCAGTATTTGTAACTTAGTTGCTTTGAAATATTGCCACATAGCATTAGCTGCATCACGACACAGAATGCTGTAACCTTATACGATTGATGAATCACAAACGAAAGCAGTCACTGCTCATAACCCTAAAAGAGTCTACTACGTCTGTTAATTTAGTTGTCTGTAATGTGCTTTCATCATCACACCTTACTGTCCAAATTTACCATCTTGTGTTCTTTTAGTGTTTGATCAGTACATGGAGTTTAGCTTTACAAGTAAAGTTATTTTTCAAAAATTGGTGGTTAGATTGATCATTGAATAATATTTCTTTCTTAAAAGTCTGTTCAATTGTTCATTAAATAATCTTTCTCAAAAAGGCCGTTCAGTTATTCATTCAATAATCTTTCTCAAAAAGACTCTTCGCTAAATAATTAGGGAATCTCTAGGTATATTGTAAGATGAACATCAATATTGCTCTTCGTTGTCCGTTCAATAATTACAGAATTTCTGTAAAAATTAATATTAAGATGGTTCTTCTTATCCTCATCATCCTTTCTCTCTTTGCTCCCTAATCAGGAGTTTGTAATGGGTGAAAATATGTTATTTTTATCCTGAAAATCCATTCCAGTACCTTATTGGAGCTTTTTGTTTATACATGATGTATTGCTTATCTCTATATTTTAGGGGAATGGTTATACATCTTTAAAATTGTAATTTATTTATTTATTTTAATGCCTTCTTTCAGTTTACAAGTTACTAAATAGTTTCAGTTATTTTTGGGGATATTTGGTAGTTGAGACATTTTAATAGTGTGCTATTCTCATATTTTTTTTCATTTGTGAGTAATTTATGATCTGCCTGTCCTTGAGACACCTATTTTAAAGTATCACATTGTTTCTAATAAGTCTTTTAACAGGCATGTGCACTGTTTATCATGTAAAAATACTGGAAAATTACTAGGTGGAAAATGTGTGCATCATAGACTAGAGCCATTTGGATTTTGGATAGCCCTTGTCTGTTTAATTATATTATGTGCTTAGTTTCGGTTAAAGAAGAAAAGTTGAAAATGGTTAAAGAACATTTGTCAGCTTTTCAAATTTCTAACCTTGGTGTCCAGGTTAGCTTGTGTGCACCTCAACAAAGTCCATGGGTACCTGATATATCCTACCCACGACCAACACAGATCCGAGTTAACAATTTCTTTTTAACAACTAAAAATTCATGATGATAAGAAAAAACGTGTTTAGTAAAGATGATAAACTTGGGCCTGTGCTCTACACAGGCTTGGTACCGCTGGTTAATTAAATAAACCAAGCTTCTAACTTGCATATTTATATTAGTTAACAAATATAAGTCCACATTTTTCAACTTCTTCAATACTTGTACTTGTCTGCTCGTGATCTTTTAAAAACGTGAAAGCAACTCTTCTACTGTGTTTGCAGAATGTCCTCACGAGTATAGTTGCATCAGTTAATACATTCCTTCATATAATTAAATTCTGTTTAGATCAGTAGTCTACTTTGCTGATTTATGATAAGATTCAGTATTGATTTATTCATTCGATTTCTATGATTTAGTTATTTGGTGCTCCTCGGATCTATAAGAGACTTGAAAACTCCTGTTATAGCTTCTTTAAGGAAACTCCTGATGATCAGTGGGTGAGGACAACAGATTTCCCTCCATCTTGGATAGGGCTATCTTCTAGCTTATGTTTGCAGTTCCGTAGGGGTGTTCGTCTTCCAAATTTCGAGGAAAGTTTTTTCCACTATGCAGAACGTGAAAACAATATTACTTTACAGACTGGTTTCACCTTTTTCGTCTCTCAAAAATCGGCTCTGGTTCCCAATGTCCAGCCTCCGGAAGGAATTTCAATTCCCTACAAGATTTTGTTCAAAATTAGTTCTTTGGTACAGCATGGATGCATACCTGGGCCAGCATTAAATGTCTACTTTTTCCGATTAGTTGATCCTCGAAGGAGAAATGTGGCATGCATTGAGCATGCCTTAGAGAAACTGTACTATATAAAGGAGTGCTGTTATGATCCGGTGAGGTGGCTCACTGAGCAGTATGATGGGTATCTCAAGGGTAGACAACCTCCAAAATCTCCGTCCATCACTTTAGATGATGGGTTGGTGTATGTAAGAAGGGTCCTAGTAACACCATGCAAAGTTTATTTTTGTGGTCCAGAGGTTAATGTTTCCAATCGGGTTCTCCGCAATTATTCTGAAGACATAGATAACTTTCTTCGTGTTTCTTTTGTTGATGAGGAGTGGGAGAAACTGTATTCTACAGACTTATTACCAAAAGCAAGTACTGGAAGTGGTGTCAGGACAAACATCTATGAGAGGATCTTATCAACTCTGCGGAAAGGCTTTGTAATTGGTGATAAAAAATTTGAATTTCTTGCATTTTCATCGAGCCAGTTGCGGGATAATTCAGTGTGGATGTTTGCATCAAGACCTGGCCTTACTGCAAATGATATAAGAGCTTGGATGGGTGATTTTTCGCAGATCAAGAATGTCGCAAAATATGCTGCCAGACTTGGTCAATCTTTTGGTTCCTCCAGAGAGACTTTGAGTGTTCTTAGGCATGAGATTGAAGTTATTCCCGATGTAAAGGTTCATGGAACCAGCTATGTCTTTTCTGATGGAATTGGTAAAATATCTGGTGACTTTGCTCATAGAGTTGCCTCAAAATGTGGCCTTCAATATACCCCATCTGCTTTCCAGATTCGTTATGGTGGATATAAAGGTGTTGTGGGTGTTGATCCGGATTCATCAATGAAGTTGTCTTTGAGAAAGAGCATGTCGAAATATGAATCAGACAACATAAAGTTAGATGTCCTTGGATGGAGCAAATATCAGCCTTGTTATCTTAATCGTCAACTGATTACTCTCTTGTCTACACTTGGAGTGAAAGATGAAGTTCTCGAACAGAAGCAAAAGGAAGCTGTAGATCAGCTTGATGCTATCTTGCATGATTCTTTGAAGGCACAGGAGGCTTTGGAATTGATGTCTCCTGGAGAGAACACTAATATTCTCAAGGCAATGCTAAACTGTGGTTATAAGCCTGATGCTGAGCCCTTTCTTTCAATGATGTTGCAAACCTTCCGCGCATCCAAGTTGCTCGATTTGCGGACTAGATCAAGAATATTTATTCCAAATGGAAGAACAATGATGGGATGTTTGGATGAATCCAGAACCTTGGAATATGGTCAGGTGTTTGTTCAGTTTACTGGTGCTGGACATGGAGAGTTTTCTGACGATTTACATCCATTTAATAACAGCAGATCCACCAACAGTAATTTCATTCTGAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAGGTAAATTTTACGTTGGAAACCTATTAACTGTTTACTTGTAAGTTTATAGAAGGCTTAACCATTTCTTGCCTGGTCTTTTACTAATGCTCTAATCCAAATTAGTTTCAAAGATAGTCAAATTGATTCTCGGGAAGCAAAAAGCGACAGAGGGAGTAATTGACTGTCTTTCCTTAATTAGTTAAGATTCACTTGTATAATATCCCCTTCTCATGAGTCATGAGATGTAAAGGCATATTGAAATACAAAGAAGTCTTTTCTTCCTTCCCATATTCTACACTAACTTATGGGAGGAAATCATTTTCCTACTGGCTACGCAATTATTCAACTTGTAACTCTCCAGACTAGGTATGTATTTCAACTGCCTCCCTACCTCTGAGGCAGAGGTAATTTGCGTACACTCTACTCTCCTCAGACCTCACTTTGTGGTATCTTACTGGGTATGTTTTTGTTGTATAATTCATCAGTACTTCATCTATCTGGAATATTCTCAACTTTTGTTCATGGAAGAATGTGTTAACTTTATTAATTGTTCTTTCTAGTAAAAGTGTAAAACTAGCTTCCACCCTTGTCAACGCTTTCTATCTTTAATTCTTTTTTATGGCATTGTTACTCAAGTGTTAAAACTTTGATGACAGACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAGGTACCCTTAGTTTCGAACAACTAGTTTTACTTCCAAAAGTATCATGACTCTGATGCATCACGATGTTCAACCACTCTTACCTTACATGATCCTGATATTTTTCTTTCCTTCTAATCCTTTTTTTGTCAACGCTTCATATTAGTCCACTAATTCTATTGCTGAGATTACCTTCTCGAAGACTTAGATTCAGTCAAATCTAGTTTAGTGCGAGTGTTAGGTGCATCAACTACAGACTGGTTACTGTACTTTTCTATTGCTGAGATCTCCTTCTCTAGGATCTATCAATTCATGAGACCAAAAAAAAAAAAATGGAACAGCATTGACTCTTGAAATCATACTTATAAGATGTGTAATGCGATACAAGTACTGAGGAACTCTTCAGTTTTTTTTTGTTTGTTGTGGGGCAGGGGGGATTGGCCAGTATGTGCAAGTACTGAGGAACTCCCTTTCACCTGTCTACCTACTGCAGGAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGGACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAACAGAGGCTGAAATACTTAGTGGTGGCATTATGAAGGCATCAAAAACTTTTGACCGCAGAAAAGATGCTGAGGCCATTAGTGTTGCTGTGAGGGCCTTGAGGAAGGAGGCAAGAGCCTGGTTCAAGAGGCGTAATGATATAGATGACATGTTACCAAAGGCTTCGGCTTGGTACCACGTTACATATCATCCTACATATTGGGGTTGCTACAATCAGGGGTTGAAAAGAGCTCATTTCATTAGCTTTCCCTGGTGTGTTTATGACCAGCTAATCCAGATTAAGAAGGACAAAGCACGTAACAGGCCAGTTCTCAACTTGTCATCTCTCAGGGCTCAACTGAGTCACAGATTAGTGTTGAAATGAGATTCCAGTCGAGCGTTAAGCTGATATATATATAATGTAATAGGGTGTGATCATAAGAAAACTGTTATGCATTGTTGACTACCTTTTGTCTTTAAAACTGCATGAAGCTGCAACATATATGCAGTACTCTAAGAAACAGATGTACAGCTAAGTACTAATATGTATGTGATTTGAGTTTCATCTTTCTTCTAAA</genome_strand>
        <mrna_strand>GAAATATTCTTTACTTACTTCACCAGGGATTGACTCATCACTCCCCTCAAGTCTTTGTGTGTTGTGATAATAAATTTGGTTGTGCTTCAGTTTCAGTCACTACTGCTGGGTAGTTTTTATTTTGCATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCAGGGGGTATTCCAGTTGGTGTTAGCATTTGAAAGTCGAACTGCACTTGGAATTTGGCTACATGGGAAAGACAATTCAGGTTTTCGGATTCCCTTATCTTCTCTCTGCGGAAGTGGTTAAGTCATTCTTAGAGAAATATACAGGATATGGAACTGTATGTGCATTGGAGGTTAAACAGTCCAAAGGAGGATCTAGAGCATTTGCCAAAGTTCAATTTGCCGACAACATAAGTGCTGACAAAATCATCACTTTGGCTAATAACAGGCTGTATTTTGGCTCTTCTTATTTGAAGGCTTGGGAAATGAAAACTGATATTGTCCAACTGCGGGCATATGTGGATCAGATGGATGGCATAACTTTGAATTTCGGATGTCAGATATCAGATGACAAGTTTGCAGTGTTGGGAAGTACAGAAGTTTCAATTCAATTTGGCATTGGATTGAAGAAATTTTTTTTCTTTTTATCTAGTGGTTCAGCTGACTATAAACTTCAGCTTTCATATGAAAATATATGGCAGGTTGTGCTCCATCGTCCATATGGTCAAAATGCTCAGTTTCTCCTCATACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTGGTGCTCCTCGGATCTATAAGAGACTTGAAAACTCCTGTTATAGCTTCTTTAAGGAAACTCCTGATGATCAGTGGGTGAGGACAACAGATTTCCCTCCATCTTGGATAGGGCTATCTTCTAGCTTATGTTTGCAGTTCCGTAGGGGTGTTCGTCTTCCAAATTTCGAGGAAAGTTTTTTCCACTATGCAGAACGTGAAAACAATATTACTTTACAGACTGGTTTCACCTTTTTCGTCTCTCAAAAATCGGCTCTGGTTCCCAATGTCCAGCCTCCGGAAGGAATTTCAATTCCCTACAAGATTTTGTTCAAAATTAGTTCTTTGGTACAGCATGGATGCATACCTGGGCCAGCATTAAATGTCTACTTTTTCCGATTAGTTGATCCTCGAAGGAGAAATGTGGCATGCATTGAGCATGCCTTAGAGAAACTGTACTATATAAAGGAGTGCTGTTATGATCCGGTGAGGTGGCTCACTGAGCAGTATGATGGGTATCTCAAGGGTAGACAACCTCCAAAATCTCCGTCCATCACTTTAGATGATGGGTTGGTGTATGTAAGAAGGGTCCTAGTAACACCATGCAAAGTTTATTTTTGTGGTCCAGAGGTTAATGTTTCCAATCGGGTTCTCCGCAATTATTCTGAAGACATAGATAACTTTCTTCGTGTTTCTTTTGTTGATGAGGAGTGGGAGAAACTGTATTCTACAGACTTATTACCAAAAGCAAGTACTGGAAGTGGTGTCAGGACAAACATCTATGAGAGGATCTTATCAACTCTGCGGAAAGGCTTTGTAATTGGTGATAAAAAATTTGAATTTCTTGCATTTTCATCGAGCCAGTTGCGGGATAATTCAGTGTGGATGTTTGCATCAAGACCTGGCCTTACTGCAAATGATATAAGAGCTTGGATGGGTGATTTTTCGCAGATCAAGAATGTCGCAAAATATGCTGCCAGACTTGGTCAATCTTTTGGTTCCTCCAGAGAGACTTTGAGTGTTCTTAGGCATGAGATTGAAGTTATTCCCGATGTAAAGGTTCATGGAACCAGCTATGTCTTTTCTGATGGAATTGGTAAAATATCTGGTGACTTTGCTCATAGAGTTGCCTCAAAATGTGGCCTTCAATATACCCCATCTGCTTTCCAGATTCGTTATGGTGGATATAAAGGTGTTGTGGGTGTTGATCCGGATTCATCAATGAAGTTGTCTTTGAGAAAGAGCATGTCGAAATATGAATCAGACAACATAAAGTTAGATGTCCTTGGATGGAGCAAATATCAGCCTTGTTATCTTAATCGTCAACTGATTACGCTCTTGTCTACACTTGGAGTGAAAGATGAAGTTCTCGAACAGAAGCAAAAGGAAGCTGTAGATCAGCTTGATGCTATCTTGCATGATTCTTTGAAGGCACAGGAGGCTTTGGAATTGATGTCTCCTGGAGAGAACACTAATATTCTCAAGGCAATGCTAAACTGTGGTTATAAGCCTGATGCTGAGCCCTTTCTTTCAATGATGTTGCAAACCTTCCGCGCATCCAAGTTGCTCGATTTGCGGACTAGATCAAGAATATTTATTCCAAATGGAAGAACAATGATGGGATGTTTGGATGAATCCAGAACCTTGGAATATGGTCAGGTGTTTGTTCAGTTTACTGGTGCTGGACATGGAGAGTTTTCTGACGATTTACATCCATTTAATAACAGCAGATCCACCAACAGTAATTTCATTCTGAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGGACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAACAGAGGCTGAAATACTTAGTGGTGGCATTATGAAGGCATCAAAAACTTTTGACCGCAGAAAAGATGCTGAGGCCATTAGTGTTGCTGTGAGGGCCTTGAGGAAGGAGGCAAGAGCCTGGTTCAAGAGGCGTAATGATATAGATGACATGTTACCAAAGGCTTCGGCTTGGTACCACGTTACATATCATCCTACATATTGGGGTTGCTACAATCAGGGGTTGAAAAGAGCTCATTTCATTAGCTTTCCCTGGTGTGTTTATGACCAGCTAATCCAGATTAAGAAGGACAAAGCACGTAACAGGCCAGTTCTCAACTTGTCATCTCTCAGGGCTCAACTGAGTCACAGATTAGTGTTGAAATGAGATTCCAGTCGAGCGTTAAGCTGATATATATATAATGTAATAGGGTGTGATCATAAGAAAACTGTTATGCATTGTTGACTACCTTTTGTCTTTAAAACTGCATGAAGCTGCAACATATATGCAGTACTCTAAGAAACAGATGTACAGCTAAGTACTAATATGTATGTGATTTGAGTTTCATCTTTCTTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424807" ref_strand="+" ref_description="SGN-E424807 [STM-44-I21]">
      <seq>atttggttgtgcttcagtttctggcactactactgggtagttttatttttgcataacttcaggaggtattccagttggtgattagcatttgaacgtcgaactgcacttggaatttggctgcatgggaaagacaattcaggtttatggattccctgatcttctgtctgcagaagtggtcaagtcattcttagagaaacatacaggatatggaactgtatgtgcattggaggttaaacagtccaaaagaggatctagagcatttgccaaagttcaatttgtcgacaacattagtgctgacaaaatcatcaatttggctagtaagaggctgtattttggctcttcttatttgaaggcttgggaaataactgatcttgtccaactgtgggagtatgtggatcacatggatggcataactttgaatttcggatgtcagatatcagatgacaagtttgcagtgttgggaagtacagaagtttcaattaaatttggcattggattgaagaaaatttttttctttttatctagtggttcagctgattataaacttcagctttcatatgaaaatatatggcaggttgtgctccatcgtccatatggtcaaaatgctcagtttctcctcatacagttatttggtgctcctcggatctataagagacttgaaaactcgtgttatagcttctttaaggaactcctgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="95799" stop="101087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96099" g_stop="96153" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96154" i_stop="97442" i_length="1289">
            <donor d_prob="0.754" d_score="0.90"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97443" g_stop="98014" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="625" r_length="570" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98015" i_stop="100712" i_length="2698">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100713" g_stop="100787" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="699" r_length="74" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E424807" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96099" e_stop="96153"/>
          <exon e_start="97443" e_stop="98014"/>
          <exon e_start="100713" e_stop="100787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGGTTGTGCTTCAGTTTCAGTCACTACTGCTGGGTAGTTTTTATTTTGCATAGTAAGTTACTTTCTCAAAGCCCCATGTGAAATTTTGCTTTGATTCAGTTTATTTTGTGTTGTTTATGTGTTTGAGGCTGTTGCGTAGCTGTTTTCTTGGTTTGTGTGTTCTATTGTTGTTTAAAGTTTGGATCTTTTTCATTGTTTTGTGAGTCTGACTGAATGTATATGATCGTGGGTGGTGAAATTTCTGTAAAATTCCTGATGGAAAGAATGTTTTAACTAATGTTACTAGTATGTTATTTGTTGATCATTAGCTTTAGAAGAAGCAGAACGAAAAGTTCACTTTAAAGAAGAAAAAAAAAAGAGACTTTGTCATCTGTGCAAAAAGCTGTATAAAAGAGAGTGTAAAACCTTTAGATATGGCTTGAGGTAGTAGTAATTTGCTAGACTGGTTAAAGTCAAGAAACCCTATTTAGCTAGATGATTGACTTAAATTGGGGTTGAGTTAGGTTCAAGTGTTTGTATCTTTACATGATAGATATCAGTGTTAGGTTCATCTTATTTGGGGTCCCATGTGAGCTCTTGTTGGGGAATGGATTGGTGATCATATCTTACCTGGTATCTGAGTTAGGTCCATCATGTTTAGGCTCCCGATGCATACTACAATTGGGCTTGCGCACAAAAGGATGTTAGAGTGGGACCCACATTGGTTGGAAATTCATTGGTGGTTGGTTTGTATGGACTTGGACAATCTTTTCCTTGTGAGTTAATCTTTTGGAGTTGAGTTAGGCCTAAGTGTCATATCTTAATAGGCCAAAAAATCTCAAATGTGTACATCAATTAGGTTGATTTCTCTTTTGATTCGTCTTGCTGTATTTAGTGGTCAAAAAGCCTACATTTTTCATGTCTCAGACGTCTGGAAAATGTATCAAATGGGTATCTAGTAGTTTGCTGTATTCCTTTATATAGTTAGTCATAATTTTGCGTAACTTTGTGGAGTCTAGTTTTCAGCACCTTAGAGTGAGCATACTTTTAGATATCTTGCTTATGCAGCAGTTTAGTTGCTCACATATTCGACAGATGTGAAGCTCTGGGTTGTCCTCTAGTGAAGGTATGGGGAGAGCACAAAAAATAAATAGTTCAATGATCTTGCTTTTAAGTTCAATGGGTATGTGTGAAATATTGAGGATGCAGCTAAATTTGAATTGCATAGCATGTAGGATTCTCCTTTACCTAGTAACTTTTGGCTCTTCTTTTACCTAATATGGTGACACTTGTACCTTAATCTTGTAATTTCATTCCTTCGTTCTTTACAATTATTCTTACTTGTGTTACATCTGTATGTAGACTTCAGGGGGTATTCCAGTTGGTG-TTAGCATTTGAAAGTCGAACTGCACTTGGAATTTGGCTACATGGGAAAGACAATTCAGGTTTTCGGATTCCCTTATCTTCTCTCTGCGGAAGTGGTTAAGTCATTCTTAGAGAAATATACAGGATATGGAACTGTATGTGCATTGGAGGTTAAACAGTCCAAAGGAGGATCTAGAGCATTTGCCAAAGTTCAATTTGCCGACAACATAAGTGCTGACAAAATCATCACTTTGGCTAATAACAGGCTGTATTTTGGCTCTTCTTATTTGAAGGCTTGGGAAATGAAAACTGATATTGTCCAACTGCGGGCATATGTGGATCAGATGGATGGCATAACTTTGAATTTCGGATGTCAGATATCAGATGACAAGTTTGCAGTGTTGGGAAGTACAGAAGTTTCAATTCAATTTGGCATTGGATTGAAGAAATTTTTTTTCTTTTTATCTAGTGGTTCAGCTGACTATAAACTTCAGCTTTCATATGAAAATATATGGCAGGTTGTGCTCCATCGTCCATATGGTCAAAATGCTCAGTTTCTCCTCATACAGGTTTTTCAATTATTCCAAACCTTAACTTTTGTTTTCATCCTTCTCCCTGTGCCTGGTCTTTGTGAATATTGTGACTATTTGATTATTGGTTGAATGCTACACAATTCTCATGTATTGGGTCTCTTACTGTTTGTTGATCCACTTCTTTTGAAGCAAAATCATTTCTGCTAAGATATATTTATTTGTTGACTTCTGAACCAAATGGAAGGGGTTGAAATCCTATTTATGAGAATTTTGATCATAAATTCCATTTCTAGAAACTGAACATGCATGAAGGCTTGAACCGACATTAAACTGGAAACTTACTAGCTACAGATCATGAAGCAAAGAAGCTTTAGAAATTACAAAGTACAAGCTCATAAGCATTAATAGCGGTTAGGCCCTCCCCGATATTGTTCTGCTTAAAGTCTTTTAAGGTTGGATGCTTGTGCGTTTATAAGCACTGCTATGTGGATAACCTAGCATCCTGTCCTAAATCCTAACTAACATGCCAGATTACCATATTCTCAGCCTATGTTTTGATGTGTCAACATCCTTTTCGTTTATAAGAATATCTGTTGACATCCTTAAAGCTGAATGTTTGAAATTCTTAACCTCTTTCATGAATATTTGCACTAGAACTTTTTTTTATCTAGTAAAATACCATGAAATGGTACTGTCAACATCCAGATTTTTGAGGAAAATGTCTTTCATTTTTTTGAGCAGATTTTTCCATCAAAGTTATAAAATGTTGATTTTCTGTTTTTTTTTTTTTGGTAAAGTAATTAAATTGTGTTGATTTTCTGTTAATATGCACTCCTATTTTAAATTTAGAAATTACTATTTCTACTGTTAATTTGAGAGAGACAGAAGAGCTTCTTGTCGTCCTGTCTACCAAACAAACGTATAATTTTGGAATTTTCCTTTTGAGTTCGCTATTTTCTTATTGCACTTCACGTAGCCGCGATAGATATCAGACGGAAGAAACAAACTAGGCTGTGCATTGAGACAAAATCATGTGCTTTTATTTTATCTGGTTAGCTTAGGAAGGTGTTTTCTGTACTTGTGTATTCATTGTCTTTTCTCATTGGTGGATATAGATGGCTTACTGTAGCTTCTTTTTTAAAAAAAATTGATGTGCTGACTGTTTTATCCTCTTTAGTTTGCAGTATTTGTAACTTAGTTGCTTTGAAATATTGCCACATAGCATTAGCTGCATCACGACACAGAATGCTGTAACCTTATACGATTGATGAATCACAAACGAAAGCAGTCACTGCTCATAACCCTAAAAGAGTCTACTACGTCTGTTAATTTAGTTGTCTGTAATGTGCTTTCATCATCACACCTTACTGTCCAAATTTACCATCTTGTGTTCTTTTAGTGTTTGATCAGTACATGGAGTTTAGCTTTACAAGTAAAGTTATTTTTCAAAAATTGGTGGTTAGATTGATCATTGAATAATATTTCTTTCTTAAAAGTCTGTTCAATTGTTCATTAAATAATCTTTCTCAAAAAGGCCGTTCAGTTATTCATTCAATAATCTTTCTCAAAAAGACTCTTCGCTAAATAATTAGGGAATCTCTAGGTATATTGTAAGATGAACATCAATATTGCTCTTCGTTGTCCGTTCAATAATTACAGAATTTCTGTAAAAATTAATATTAAGATGGTTCTTCTTATCCTCATCATCCTTTCTCTCTTTGCTCCCTAATCAGGAGTTTGTAATGGGTGAAAATATGTTATTTTTATCCTGAAAATCCATTCCAGTACCTTATTGGAGCTTTTTGTTTATACATGATGTATTGCTTATCTCTATATTTTAGGGGAATGGTTATACATCTTTAAAATTGTAATTTATTTATTTATTTTAATGCCTTCTTTCAGTTTACAAGTTACTAAATAGTTTCAGTTATTTTTGGGGATATTTGGTAGTTGAGACATTTTAATAGTGTGCTATTCTCATATTTTTTTTCATTTGTGAGTAATTTATGATCTGCCTGTCCTTGAGACACCTATTTTAAAGTATCACATTGTTTCTAATAAGTCTTTTAACAGGCATGTGCACTGTTTATCATGTAAAAATACTGGAAAATTACTAGGTGGAAAATGTGTGCATCATAGACTAGAGCCATTTGGATTTTGGATAGCCCTTGTCTGTTTAATTATATTATGTGCTTAGTTTCGGTTAAAGAAGAAAAGTTGAAAATGGTTAAAGAACATTTGTCAGCTTTTCAAATTTCTAACCTTGGTGTCCAGGTTAGCTTGTGTGCACCTCAACAAAGTCCATGGGTACCTGATATATCCTACCCACGACCAACACAGATCCGAGTTAACAATTTCTTTTTAACAACTAAAAATTCATGATGATAAGAAAAAACGTGTTTAGTAAAGATGATAAACTTGGGCCTGTGCTCTACACAGGCTTGGTACCGCTGGTTAATTAAATAAACCAAGCTTCTAACTTGCATATTTATATTAGTTAACAAATATAAGTCCACATTTTTCAACTTCTTCAATACTTGTACTTGTCTGCTCGTGATCTTTTAAAAACGTGAAAGCAACTCTTCTACTGTGTTTGCAGAATGTCCTCACGAGTATAGTTGCATCAGTTAATACATTCCTTCATATAATTAAATTCTGTTTAGATCAGTAGTCTACTTTGCTGATTTATGATAAGATTCAGTATTGATTTATTCATTCGATTTCTATGATTTAGTTATTTGGTGCTCCTCGGATCTATAAGAGACTTGAAAACTCCTGTTATAGCTTCTTTAAGGAAACTCCTGATGAT</genome_strand>
        <mrna_strand>ATTTGGTTGTGCTTCAGTTTCTGGCACTACTACTGGGTAGTTTTATTTTTGCATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCAGGAGGTATTCCAGTTGGTGATTAGCATTTGAACGTCGAACTGCACTTGGAATTTGGCTGCATGGGAAAGACAATTCAGGTTTATGGATTCCCTGATCTTCTGTCTGCAGAAGTGGTCAAGTCATTCTTAGAGAAACATACAGGATATGGAACTGTATGTGCATTGGAGGTTAAACAGTCCAAAAGAGGATCTAGAGCATTTGCCAAAGTTCAATTTGTCGACAACATTAGTGCTGACAAAATCATCAATTTGGCTAGTAAGAGGCTGTATTTTGGCTCTTCTTATTTGAAGGCTTGGGAAAT---AACTGATCTTGTCCAACTGTGGGAGTATGTGGATCACATGGATGGCATAACTTTGAATTTCGGATGTCAGATATCAGATGACAAGTTTGCAGTGTTGGGAAGTACAGAAGTTTCAATTAAATTTGGCATTGGATTGAAGAAAATTTTTTTCTTTTTATCTAGTGGTTCAGCTGATTATAAACTTCAGCTTTCATATGAAAATATATGGCAGGTTGTGCTCCATCGTCCATATGGTCAAAATGCTCAGTTTCTCCTCATACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTGGTGCTCCTCGGATCTATAAGAGACTTGAAAACTCGTGTTATAGCTTCTTTAAGG-AACTCCTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453214" ref_strand="+" ref_description="SGN-E453214 [cSTS-19-C12]">
      <seq>atttggttgtgcttcagtttctggcactactactgggtagttttatttttgcataacttcaggaggtattccagttggtgattagcatttgaacgtcgaactgcacttggaatttggctgcatgggaaagacaattcaggtttatggattccctgatcttctgtctgcagaagtggtcaagtcattcttagagaaacatacaggatatggaactgtatgtgcattggaggttaaacagtccaaaagaggatctagagcatttgccaaagttcaatttgtcgacaacattagtgctgacaaaatcatcaatttggctagtaagaggctgtattttggctcttcttatttgaaggcttgggaaataactgatcttgtccaactgtgggagtatgtggatcacatggatggcataactttgaatttcggatgtcagatatcagatgacaagtttgcagtgttgggaagtacagaagtttcaattaaatttggcattggattgaagaaaatttttttctttttatctagtggttcagctgattataaacttcagctttcatatgaaaatatatggcaggttgtgctccatcgtccatatggtcaaaatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="95799" stop="98297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96099" g_stop="96153" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96154" i_stop="97442" i_length="1289">
            <donor d_prob="0.754" d_score="0.90"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97443" g_stop="97997" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="608" r_length="553" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E453214" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96099" e_stop="96153"/>
          <exon e_start="97443" e_stop="97997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGGTTGTGCTTCAGTTTCAGTCACTACTGCTGGGTAGTTTTTATTTTGCATAGTAAGTTACTTTCTCAAAGCCCCATGTGAAATTTTGCTTTGATTCAGTTTATTTTGTGTTGTTTATGTGTTTGAGGCTGTTGCGTAGCTGTTTTCTTGGTTTGTGTGTTCTATTGTTGTTTAAAGTTTGGATCTTTTTCATTGTTTTGTGAGTCTGACTGAATGTATATGATCGTGGGTGGTGAAATTTCTGTAAAATTCCTGATGGAAAGAATGTTTTAACTAATGTTACTAGTATGTTATTTGTTGATCATTAGCTTTAGAAGAAGCAGAACGAAAAGTTCACTTTAAAGAAGAAAAAAAAAAGAGACTTTGTCATCTGTGCAAAAAGCTGTATAAAAGAGAGTGTAAAACCTTTAGATATGGCTTGAGGTAGTAGTAATTTGCTAGACTGGTTAAAGTCAAGAAACCCTATTTAGCTAGATGATTGACTTAAATTGGGGTTGAGTTAGGTTCAAGTGTTTGTATCTTTACATGATAGATATCAGTGTTAGGTTCATCTTATTTGGGGTCCCATGTGAGCTCTTGTTGGGGAATGGATTGGTGATCATATCTTACCTGGTATCTGAGTTAGGTCCATCATGTTTAGGCTCCCGATGCATACTACAATTGGGCTTGCGCACAAAAGGATGTTAGAGTGGGACCCACATTGGTTGGAAATTCATTGGTGGTTGGTTTGTATGGACTTGGACAATCTTTTCCTTGTGAGTTAATCTTTTGGAGTTGAGTTAGGCCTAAGTGTCATATCTTAATAGGCCAAAAAATCTCAAATGTGTACATCAATTAGGTTGATTTCTCTTTTGATTCGTCTTGCTGTATTTAGTGGTCAAAAAGCCTACATTTTTCATGTCTCAGACGTCTGGAAAATGTATCAAATGGGTATCTAGTAGTTTGCTGTATTCCTTTATATAGTTAGTCATAATTTTGCGTAACTTTGTGGAGTCTAGTTTTCAGCACCTTAGAGTGAGCATACTTTTAGATATCTTGCTTATGCAGCAGTTTAGTTGCTCACATATTCGACAGATGTGAAGCTCTGGGTTGTCCTCTAGTGAAGGTATGGGGAGAGCACAAAAAATAAATAGTTCAATGATCTTGCTTTTAAGTTCAATGGGTATGTGTGAAATATTGAGGATGCAGCTAAATTTGAATTGCATAGCATGTAGGATTCTCCTTTACCTAGTAACTTTTGGCTCTTCTTTTACCTAATATGGTGACACTTGTACCTTAATCTTGTAATTTCATTCCTTCGTTCTTTACAATTATTCTTACTTGTGTTACATCTGTATGTAGACTTCAGGGGGTATTCCAGTTGGTG-TTAGCATTTGAAAGTCGAACTGCACTTGGAATTTGGCTACATGGGAAAGACAATTCAGGTTTTCGGATTCCCTTATCTTCTCTCTGCGGAAGTGGTTAAGTCATTCTTAGAGAAATATACAGGATATGGAACTGTATGTGCATTGGAGGTTAAACAGTCCAAAGGAGGATCTAGAGCATTTGCCAAAGTTCAATTTGCCGACAACATAAGTGCTGACAAAATCATCACTTTGGCTAATAACAGGCTGTATTTTGGCTCTTCTTATTTGAAGGCTTGGGAAATGAAAACTGATATTGTCCAACTGCGGGCATATGTGGATCAGATGGATGGCATAACTTTGAATTTCGGATGTCAGATATCAGATGACAAGTTTGCAGTGTTGGGAAGTACAGAAGTTTCAATTCAATTTGGCATTGGATTGAAGAAATTTTTTTTCTTTTTATCTAGTGGTTCAGCTGACTATAAACTTCAGCTTTCATATGAAAATATATGGCAGGTTGTGCTCCATCGTCCATATGGTCAAAATGCTC</genome_strand>
        <mrna_strand>ATTTGGTTGTGCTTCAGTTTCTGGCACTACTACTGGGTAGTTTTATTTTTGCATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCAGGAGGTATTCCAGTTGGTGATTAGCATTTGAACGTCGAACTGCACTTGGAATTTGGCTGCATGGGAAAGACAATTCAGGTTTATGGATTCCCTGATCTTCTGTCTGCAGAAGTGGTCAAGTCATTCTTAGAGAAACATACAGGATATGGAACTGTATGTGCATTGGAGGTTAAACAGTCCAAAAGAGGATCTAGAGCATTTGCCAAAGTTCAATTTGTCGACAACATTAGTGCTGACAAAATCATCAATTTGGCTAGTAAGAGGCTGTATTTTGGCTCTTCTTATTTGAAGGCTTGGGAAAT---AACTGATCTTGTCCAACTGTGGGAGTATGTGGATCACATGGATGGCATAACTTTGAATTTCGGATGTCAGATATCAGATGACAAGTTTGCAGTGTTGGGAAGTACAGAAGTTTCAATTAAATTTGGCATTGGATTGAAGAAAATTTTTTTCTTTTTATCTAGTGGTTCAGCTGATTATAAACTTCAGCTTTCATATGAAAATATATGGCAGGTTGTGCTCCATCGTCCATATGGTCAAAATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560509" ref_strand="+" ref_description="SGN-E560509 [20174]">
      <seq>ccaatgtccagcctccggaaggaattgcaattccctacaagatattgttcaaaattagttctttggtacagcatggatgcattcctgggccttcattaaatgtctactttttccgattagttgatcctcaaaggaggaatgttgcatgcattgagcaagccttagagaaactgtactatttgaaggagtgctgttatgatccagtgaggtggctcactgagcagtatgatgggtatcgcaagggtagacaacctccaaaatctccgtccatcactttagatgatgggttggtgtatgtaagaagggtcctagtaacaccatgcaaagtttatttttgtggtccagaggttaatgtttccaatcgggttctccgcaattattctgaagacatagataactttcttcgtgtttcttttgttgatgaggagtgggagaaactgtattctacagagttattaccaaaagcaagtactggatcacgtggtatcaggacaaacatctatgagaggatcctatcaactctgcggaaaggctttgtaattggtgataaaaaatttgaatttcttgcattttcatcgagccagttgcgggataattcagtgtggatgtttgcatcaagacctggccttactgcaaatgatataaggaacttggatgggtgatttttcgcagatcaagaatgtggcaaaatatgccgcagacttggtcaatcttttggttcctccacagagactttgagtgttcttaggcatgagatgaagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="100678" stop="102039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100978" g_stop="101739" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="764" r_length="764" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E560509" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100978" e_stop="101739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATGTCCAGCCTCCGGAAGGAATTTCAATTCCCTACAAGATTTTGTTCAAAATTAGTTCTTTGGTACAGCATGGATGCATACCTGGGCCAGCATTAAATGTCTACTTTTTCCGATTAGTTGATCCTCGAAGGAGAAATGTGGCATGCATTGAGCATGCCTTAGAGAAACTGTACTATATAAAGGAGTGCTGTTATGATCCGGTGAGGTGGCTCACTGAGCAGTATGATGGGTATCTCAAGGGTAGACAACCTCCAAAATCTCCGTCCATCACTTTAGATGATGGGTTGGTGTATGTAAGAAGGGTCCTAGTAACACCATGCAAAGTTTATTTTTGTGGTCCAGAGGTTAATGTTTCCAATCGGGTTCTCCGCAATTATTCTGAAGACATAGATAACTTTCTTCGTGTTTCTTTTGTTGATGAGGAGTGGGAGAAACTGTATTCTACAGACTTATTACCAAAAGCAAGTACTGGA--A-GTGGTGTCAGGACAAACATCTATGAGAGGATCTTATCAACTCTGCGGAAAGGCTTTGTAATTGGTGATAAAAAATTTGAATTTCTTGCATTTTCATCGAGCCAGTTGCGGGATAATTCAGTGTGGATGTTTGCATCAAGACCTGGCCTTACTGCAAATGATATAA-GAGCTTGGATGGGTGATTTTTCGCAGATCAAGAATGTCGCAAAATATGCTGCCAGACTTGGTCAATCTTTTGGTTCCTCCAGAGAGACTTTGAGTGTTCTTAGGCATGAGATTGAAGTTA</genome_strand>
        <mrna_strand>CCAATGTCCAGCCTCCGGAAGGAATTGCAATTCCCTACAAGATATTGTTCAAAATTAGTTCTTTGGTACAGCATGGATGCATTCCTGGGCCTTCATTAAATGTCTACTTTTTCCGATTAGTTGATCCTCAAAGGAGGAATGTTGCATGCATTGAGCAAGCCTTAGAGAAACTGTACTATTTGAAGGAGTGCTGTTATGATCCAGTGAGGTGGCTCACTGAGCAGTATGATGGGTATCGCAAGGGTAGACAACCTCCAAAATCTCCGTCCATCACTTTAGATGATGGGTTGGTGTATGTAAGAAGGGTCCTAGTAACACCATGCAAAGTTTATTTTTGTGGTCCAGAGGTTAATGTTTCCAATCGGGTTCTCCGCAATTATTCTGAAGACATAGATAACTTTCTTCGTGTTTCTTTTGTTGATGAGGAGTGGGAGAAACTGTATTCTACAGAGTTATTACCAAAAGCAAGTACTGGATCACGTGGTATCAGGACAAACATCTATGAGAGGATCCTATCAACTCTGCGGAAAGGCTTTGTAATTGGTGATAAAAAATTTGAATTTCTTGCATTTTCATCGAGCCAGTTGCGGGATAATTCAGTGTGGATGTTTGCATCAAGACCTGGCCTTACTGCAAATGATATAAGGAACTTGGATGGGTGATTTTTCGCAGATCAAGAATGTGGCAAAATATGCCG-CAGACTTGGTCAATCTTTTGGTTCCTCCACAGAGACTTTGAGTGTTCTTAGGCATGAGA-TGAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252748" ref_strand="+" ref_description="SGN-E252748 [cLEG-16-J9]">
      <seq>tctcctggagagaacactaatattctcaaggcaatgctaaactgtggttataagcctgatgctgagccctttctttcaatgatgttgcaaaccttccgcgccatccaagttgctcgatttgcggactagatcaagaatatttattccaaatggaagaacaatgatgggatgtggatgaatccagaaccttggaatatggtcaggtgtttgttcagtttactggtgctggacatggagagttttctgacgatttacatccatttaataacagcagatccaccaacagtaatttcattctgaagggaaatgtggttgttgcaaaaaatccatgcttgcatcctggtgatattcgtgttttaaaggctgtaaatgttcgagcgctgcaccacatggtagattgtgttgtattccctcagaaaggaaaaagacctcatccgaatgaatgttctgggagtgatttggatggggatatctactttgtttgctgggatcaagacatgatcccgccaaggcaagtccagccgatggaatatcctccagcacccagcatacagttggaccatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="101850" stop="103653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102150" g_stop="102577" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102578" i_stop="103212" i_length="635">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103213" g_stop="103353" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="568" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E252748" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102150" e_stop="102577"/>
          <exon e_start="103213" e_stop="103353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTGGAGAGAACACTAATATTCTCAAGGCAATGCTAAACTGTGGTTATAAGCCTGATGCTGAGCCCTTTCTTTCAATGATGTTGCAAACCTTCCGCG-CATCCAAGTTGCTCGATTTGCGGACTAGATCAAGAATATTTATTCCAAATGGAAGAACAATGATGGGATGTTTGGATGAATCCAGAACCTTGGAATATGGTCAGGTGTTTGTTCAGTTTACTGGTGCTGGACATGGAGAGTTTTCTGACGATTTACATCCATTTAATAACAGCAGATCCACCAACAGTAATTTCATTCTGAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAGGTAAATTTTACGTTGGAAACCTATTAACTGTTTACTTGTAAGTTTATAGAAGGCTTAACCATTTCTTGCCTGGTCTTTTACTAATGCTCTAATCCAAATTAGTTTCAAAGATAGTCAAATTGATTCTCGGGAAGCAAAAAGCGACAGAGGGAGTAATTGACTGTCTTTCCTTAATTAGTTAAGATTCACTTGTATAATATCCCCTTCTCATGAGTCATGAGATGTAAAGGCATATTGAAATACAAAGAAGTCTTTTCTTCCTTCCCATATTCTACACTAACTTATGGGAGGAAATCATTTTCCTACTGGCTACGCAATTATTCAACTTGTAACTCTCCAGACTAGGTATGTATTTCAACTGCCTCCCTACCTCTGAGGCAGAGGTAATTTGCGTACACTCTACTCTCCTCAGACCTCACTTTGTGGTATCTTACTGGGTATGTTTTTGTTGTATAATTCATCAGTACTTCATCTATCTGGAATATTCTCAACTTTTGTTCATGGAAGAATGTGTTAACTTTATTAATTGTTCTTTCTAGTAAAAGTGTAAAACTAGCTTCCACCCTTGTCAACGCTTTCTATCTTTAATTCTTTTTTATGGCATTGTTACTCAAGTGTTAAAACTTTGATGACAGACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGT</genome_strand>
        <mrna_strand>TCTCCTGGAGAGAACACTAATATTCTCAAGGCAATGCTAAACTGTGGTTATAAGCCTGATGCTGAGCCCTTTCTTTCAATGATGTTGCAAACCTTCCGCGCCATCCAAGTTGCTCGATTTGCGGACTAGATCAAGAATATTTATTCCAAATGGAAGAACAATGATGGGATG--TGGATGAATCCAGAACCTTGGAATATGGTCAGGTGTTTGTTCAGTTTACTGGTGCTGGACATGGAGAGTTTTCTGACGATTTACATCCATTTAATAACAGCAGATCCACCAACAGTAATTTCATTCTGAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570747" ref_strand="+" ref_description="SGN-E570747 [15379]">
      <seq>caagaatatttattccaaatggaagagcaatgatgggatgtttggatgaatccagaaccttggaatatggtcaggtgtttgttcagtttactggttctggacatagagaattttctgaggatttacatccatttaataacagcagatccaccaactgtaatttcattctcaagggaaatgtggttgttgcaaaaaatccatgcttgcatcctggtgatattcgtgttttaagggctgtagatgttccagcgctgcaccacatggtagattgtgttgtattcccccagaaaggaaaaagacctcatccgaatgaatgttctgggagtgatttggatggagatatctactttgtttgctgggatcaagacatgattccaccaaggcaagtccaaccgatggaatatcctccagcacccagcatacagttggatcatgatgtcacaattgaggaagttgaagagtacttcaccaactatattgtgaatgacagtttgggaatcatagcaaatgcccatgtcgtatttgcagacagagaacctgatatggccatgagtgatccatgcaaaaaacttgctgagctcttttcaattgcagtggactttccaaagactggtgttcctgctgaaataccatctcagttgcggcctaaaagaatacccagacttcattggataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="101980" stop="104357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102280" g_stop="102577" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102578" i_stop="103212" i_length="635">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103213" g_stop="103363" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="449" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103364" i_stop="103832" i_length="469">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103833" g_stop="104057" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="676" r_length="227" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E570747" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102280" e_stop="102577"/>
          <exon e_start="103213" e_stop="103363"/>
          <exon e_start="103833" e_stop="104057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATATTTATTCCAAATGGAAGAACAATGATGGGATGTTTGGATGAATCCAGAACCTTGGAATATGGTCAGGTGTTTGTTCAGTTTACTGGTGCTGGACATGGAGAGTTTTCTGACGATTTACATCCATTTAATAACAGCAGATCCACCAACAGTAATTTCATTCTGAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAGGTAAATTTTACGTTGGAAACCTATTAACTGTTTACTTGTAAGTTTATAGAAGGCTTAACCATTTCTTGCCTGGTCTTTTACTAATGCTCTAATCCAAATTAGTTTCAAAGATAGTCAAATTGATTCTCGGGAAGCAAAAAGCGACAGAGGGAGTAATTGACTGTCTTTCCTTAATTAGTTAAGATTCACTTGTATAATATCCCCTTCTCATGAGTCATGAGATGTAAAGGCATATTGAAATACAAAGAAGTCTTTTCTTCCTTCCCATATTCTACACTAACTTATGGGAGGAAATCATTTTCCTACTGGCTACGCAATTATTCAACTTGTAACTCTCCAGACTAGGTATGTATTTCAACTGCCTCCCTACCTCTGAGGCAGAGGTAATTTGCGTACACTCTACTCTCCTCAGACCTCACTTTGTGGTATCTTACTGGGTATGTTTTTGTTGTATAATTCATCAGTACTTCATCTATCTGGAATATTCTCAACTTTTGTTCATGGAAGAATGTGTTAACTTTATTAATTGTTCTTTCTAGTAAAAGTGTAAAACTAGCTTCCACCCTTGTCAACGCTTTCTATCTTTAATTCTTTTTTATGGCATTGTTACTCAAGTGTTAAAACTTTGATGACAGACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAGGTACCCTTAGTTTCGAACAACTAGTTTTACTTCCAAAAGTATCATGACTCTGATGCATCACGATGTTCAACCACTCTTACCTTACATGATCCTGATATTTTTCTTTCCTTCTAATCCTTTTTTTGTCAACGCTTCATATTAGTCCACTAATTCTATTGCTGAGATTACCTTCTCGAAGACTTAGATTCAGTCAAATCTAGTTTAGTGCGAGTGTTAGGTGCATCAACTACAGACTGGTTACTGTACTTTTCTATTGCTGAGATCTCCTTCTCTAGGATCTATCAATTCATGAGACCAAAAAAAAAAAAATGGAACAGCATTGACTCTTGAAATCATACTTATAAGATGTGTAATGCGATACAAGTACTGAGGAACTCTTCAGTTTTTTTTTGTTTGTTGTGGGGCAGGGGGGATTGGCCAGTATGTGCAAGTACTGAGGAACTCCCTTTCACCTGTCTACCTACTGCAGGAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCT-AAAGAATACCCAGACTTCA-TGGATAAG</genome_strand>
        <mrna_strand>CAAGAATATTTATTCCAAATGGAAGAGCAATGATGGGATGTTTGGATGAATCCAGAACCTTGGAATATGGTCAGGTGTTTGTTCAGTTTACTGGTTCTGGACATAGAGAATTTTCTGAGGATTTACATCCATTTAATAACAGCAGATCCACCAACTGTAATTTCATTCTCAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAGGGCTGTAGATGTTCCAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCCCAGAAAGGAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGAGATATCTACTTTGTTTGCTGGGATCAAGACATGATTCCACCAAGGCAAGTCCAACCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGATCATGATGTCACAATTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCTGCTGAAATACCATCTCAGTTGCGGCCTAAAAGAATACCCAGACTTCATTGGATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567138" ref_strand="+" ref_description="SGN-E567138 [11217]">
      <seq>atttattccaaatggaagagcaatgatgggatgtttggatgaatccagaaccttggaatatggtcaggtgtttgttcagtttactggttctggacatagagaattttctgaggatttacatccatttaataacagcagatccaccaactgtaatttcattctcaagggaaatgtggttgttgcaaaaaatccatgcttgcatcctggtgatattcgtgttttaagggctgtagatgttccagcgctgcaccacatggtagattgtgttgtattcccccagaaaggaaaaagacctcatccgaatgaatgttctgggagtgatttggatggagatatctactttgtttgctgggatcaagacatgattccaccaaggcaagtccaaccgatggaatatcctccagcacccagcatacagttggatcatgatgtcacaattgaggaagttgaagagtacttcaccaactatattgtgaatgacagtttgggaatcatagcaaatgcccatgtcgtatttgcagacagagaacctgatatggccatgagtgatccatgcaaaaaacttgctgagctcttttcaattgcagtggactttccaacagactggtgttcctgctgaaatacatctcagttgcgccctaaagaataccagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="101987" stop="104344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102287" g_stop="102577" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102578" i_stop="103212" i_length="635">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103213" g_stop="103363" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="442" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103364" i_stop="103832" i_length="469">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103833" g_stop="104045" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="654" r_length="212" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E567138" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102287" e_stop="102577"/>
          <exon e_start="103213" e_stop="103363"/>
          <exon e_start="103833" e_stop="104045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTCCAAATGGAAGAACAATGATGGGATGTTTGGATGAATCCAGAACCTTGGAATATGGTCAGGTGTTTGTTCAGTTTACTGGTGCTGGACATGGAGAGTTTTCTGACGATTTACATCCATTTAATAACAGCAGATCCACCAACAGTAATTTCATTCTGAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAGGTAAATTTTACGTTGGAAACCTATTAACTGTTTACTTGTAAGTTTATAGAAGGCTTAACCATTTCTTGCCTGGTCTTTTACTAATGCTCTAATCCAAATTAGTTTCAAAGATAGTCAAATTGATTCTCGGGAAGCAAAAAGCGACAGAGGGAGTAATTGACTGTCTTTCCTTAATTAGTTAAGATTCACTTGTATAATATCCCCTTCTCATGAGTCATGAGATGTAAAGGCATATTGAAATACAAAGAAGTCTTTTCTTCCTTCCCATATTCTACACTAACTTATGGGAGGAAATCATTTTCCTACTGGCTACGCAATTATTCAACTTGTAACTCTCCAGACTAGGTATGTATTTCAACTGCCTCCCTACCTCTGAGGCAGAGGTAATTTGCGTACACTCTACTCTCCTCAGACCTCACTTTGTGGTATCTTACTGGGTATGTTTTTGTTGTATAATTCATCAGTACTTCATCTATCTGGAATATTCTCAACTTTTGTTCATGGAAGAATGTGTTAACTTTATTAATTGTTCTTTCTAGTAAAAGTGTAAAACTAGCTTCCACCCTTGTCAACGCTTTCTATCTTTAATTCTTTTTTATGGCATTGTTACTCAAGTGTTAAAACTTTGATGACAGACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAGGTACCCTTAGTTTCGAACAACTAGTTTTACTTCCAAAAGTATCATGACTCTGATGCATCACGATGTTCAACCACTCTTACCTTACATGATCCTGATATTTTTCTTTCCTTCTAATCCTTTTTTTGTCAACGCTTCATATTAGTCCACTAATTCTATTGCTGAGATTACCTTCTCGAAGACTTAGATTCAGTCAAATCTAGTTTAGTGCGAGTGTTAGGTGCATCAACTACAGACTGGTTACTGTACTTTTCTATTGCTGAGATCTCCTTCTCTAGGATCTATCAATTCATGAGACCAAAAAAAAAAAAATGGAACAGCATTGACTCTTGAAATCATACTTATAAGATGTGTAATGCGATACAAGTACTGAGGAACTCTTCAGTTTTTTTTTGTTTGTTGTGGGGCAGGGGGGATTGGCCAGTATGTGCAAGTACTGAGGAACTCCCTTTCACCTGTCTACCTACTGCAGGAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAA-AGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGAC</genome_strand>
        <mrna_strand>ATTTATTCCAAATGGAAGAGCAATGATGGGATGTTTGGATGAATCCAGAACCTTGGAATATGGTCAGGTGTTTGTTCAGTTTACTGGTTCTGGACATAGAGAATTTTCTGAGGATTTACATCCATTTAATAACAGCAGATCCACCAACTGTAATTTCATTCTCAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAGGGCTGTAGATGTTCCAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCCCAGAAAGGAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGAGATATCTACTTTGTTTGCTGGGATCAAGACATGATTCCACCAAGGCAAGTCCAACCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGATCATGATGTCACAATTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAACAGACTGGTGTTCCTGCTGAAATA-CATCTCAGTTGCGCCCTAAAGAATA-CCAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736127" ref_strand="+" ref_description="SGN-E736127 [LC04BH04]">
      <seq>gacatggagagttttctgacgatttacatccatttaataacagcagatccaccaacagtaatttcattctgaagggaaatgtggttgttgcaaaaaatccatgcttgcatcctggtgatattcgtgttttaaaggctgtaaatgttcgagcgctgcaccacatggtagattgtgttgtattccctcagaaaggaaaaagacctcatccgaatgaatgttctgggagtgatttggatggggatatctactttgtttgctgggatcaagacatgatcccgccaaggcaagtccagccgatggaatatcctccagcacccagcatacagttggaccatgatgtcacaattgaggaagttgaagagtacttcaccaactatattgtgaatgacagtttgggaatcatagcaaatgcccatgtcgtatttgcagacagagaacctgatatggccatgagtgatccatgcaaaaaacttgctgagctcttttcaattgcagtggactttccaaagactggtgttcccgctgaaataccatctcagttgcgccctaaagaatacccagacttcatggataagccggacaagaccagctatatctcagaaagagttattggaaagcttttcaggaaagtgaaggacaaagcacctcaggctagctctatcgcgaccttcacaagagatgttgcaaggagatcatatgatgctgatatggaagttgatggatttgaagattacattgacgaagcttttgactacaaaactgaatatgacaacaagctgggtaatttaatggactactatggcataaaaacagaggctgaaatacttagtggtggcattatgaangcatcaaaaacttttgaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="102079" stop="104647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102379" g_stop="102577" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102578" i_stop="103212" i_length="635">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103213" g_stop="103363" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="350" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103364" i_stop="103832" i_length="469">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103833" g_stop="104347" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="865" r_length="515" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E736127" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102379" e_stop="102577"/>
          <exon e_start="103213" e_stop="103363"/>
          <exon e_start="103833" e_stop="104347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATGGAGAGTTTTCTGACGATTTACATCCATTTAATAACAGCAGATCCACCAACAGTAATTTCATTCTGAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAGGTAAATTTTACGTTGGAAACCTATTAACTGTTTACTTGTAAGTTTATAGAAGGCTTAACCATTTCTTGCCTGGTCTTTTACTAATGCTCTAATCCAAATTAGTTTCAAAGATAGTCAAATTGATTCTCGGGAAGCAAAAAGCGACAGAGGGAGTAATTGACTGTCTTTCCTTAATTAGTTAAGATTCACTTGTATAATATCCCCTTCTCATGAGTCATGAGATGTAAAGGCATATTGAAATACAAAGAAGTCTTTTCTTCCTTCCCATATTCTACACTAACTTATGGGAGGAAATCATTTTCCTACTGGCTACGCAATTATTCAACTTGTAACTCTCCAGACTAGGTATGTATTTCAACTGCCTCCCTACCTCTGAGGCAGAGGTAATTTGCGTACACTCTACTCTCCTCAGACCTCACTTTGTGGTATCTTACTGGGTATGTTTTTGTTGTATAATTCATCAGTACTTCATCTATCTGGAATATTCTCAACTTTTGTTCATGGAAGAATGTGTTAACTTTATTAATTGTTCTTTCTAGTAAAAGTGTAAAACTAGCTTCCACCCTTGTCAACGCTTTCTATCTTTAATTCTTTTTTATGGCATTGTTACTCAAGTGTTAAAACTTTGATGACAGACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAGGTACCCTTAGTTTCGAACAACTAGTTTTACTTCCAAAAGTATCATGACTCTGATGCATCACGATGTTCAACCACTCTTACCTTACATGATCCTGATATTTTTCTTTCCTTCTAATCCTTTTTTTGTCAACGCTTCATATTAGTCCACTAATTCTATTGCTGAGATTACCTTCTCGAAGACTTAGATTCAGTCAAATCTAGTTTAGTGCGAGTGTTAGGTGCATCAACTACAGACTGGTTACTGTACTTTTCTATTGCTGAGATCTCCTTCTCTAGGATCTATCAATTCATGAGACCAAAAAAAAAAAAATGGAACAGCATTGACTCTTGAAATCATACTTATAAGATGTGTAATGCGATACAAGTACTGAGGAACTCTTCAGTTTTTTTTTGTTTGTTGTGGGGCAGGGGGGATTGGCCAGTATGTGCAAGTACTGAGGAACTCCCTTTCACCTGTCTACCTACTGCAGGAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGGACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAACAGAGGCTGAAATACTTAGTGGTGGCATTATGAAGGCATCAAAAACTTTTGACCG</genome_strand>
        <mrna_strand>GACATGGAGAGTTTTCTGACGATTTACATCCATTTAATAACAGCAGATCCACCAACAGTAATTTCATTCTGAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGGACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAACAGAGGCTGAAATACTTAGTGGTGGCATTATGAANGCATCAAAAACTTTTGACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740309" ref_strand="+" ref_description="SGN-E740309 [LC20DF05]">
      <seq>catatggagagttttctgacgatttacatccatttaataacagcagatccaccaacagtaatttcattctgaagggaaatgtggttgttgcaaaaaatccatgcttgcatcctggtgatattcgtgttttaaaggctgtaaatgttcgagcgctgcaccacatggtagattgtgttgtattccctcagaaaggaaaaagacctcatccgaatgaatgttctgggagtgatttggatggggatatctactttgtttgctgggatcaagacatgatcccgccaaggcaagtccagccgatggaatatcctccagcacccagcatacagttggaccatgatgtcacaattgaggaagttgaagagtacttcaccaactatattgtgaatgacagtttgggaatcatagcaaatgcccatgtcgtatttgcagacagagaacctgatatggccatgagtgatccatgcaaaaaacttgctgagctcttttcaattgcagtggactttccaaagactggtgttcccgctgaaataccatctcagttgcgccctaaagaatacccagacttcatggataagccggacaagaccagctatatctcagaaagagttattggaaagcttttcaggaaagtgaaggacaaagcacctcaggctagctctatcgcgaccttcacaagagatgttgcaaggagatcatatgatgctgatatggaagttgatggatttgaagattacattgacgaagcttttgactacaaaactgaatatgacaacaagctgggtaatttaatggactactatggcataaaaacagaggctgaaatacttagtggtggcattatgaaagcatcaaaaacttttgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="102080" stop="104646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102379" g_stop="102577" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102578" i_stop="103212" i_length="635">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103213" g_stop="103363" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="350" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103364" i_stop="103832" i_length="469">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103833" g_stop="104346" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="864" r_length="514" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E740309" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102379" e_stop="102577"/>
          <exon e_start="103213" e_stop="103363"/>
          <exon e_start="103833" e_stop="104346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATGGAGAGTTTTCTGACGATTTACATCCATTTAATAACAGCAGATCCACCAACAGTAATTTCATTCTGAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAGGTAAATTTTACGTTGGAAACCTATTAACTGTTTACTTGTAAGTTTATAGAAGGCTTAACCATTTCTTGCCTGGTCTTTTACTAATGCTCTAATCCAAATTAGTTTCAAAGATAGTCAAATTGATTCTCGGGAAGCAAAAAGCGACAGAGGGAGTAATTGACTGTCTTTCCTTAATTAGTTAAGATTCACTTGTATAATATCCCCTTCTCATGAGTCATGAGATGTAAAGGCATATTGAAATACAAAGAAGTCTTTTCTTCCTTCCCATATTCTACACTAACTTATGGGAGGAAATCATTTTCCTACTGGCTACGCAATTATTCAACTTGTAACTCTCCAGACTAGGTATGTATTTCAACTGCCTCCCTACCTCTGAGGCAGAGGTAATTTGCGTACACTCTACTCTCCTCAGACCTCACTTTGTGGTATCTTACTGGGTATGTTTTTGTTGTATAATTCATCAGTACTTCATCTATCTGGAATATTCTCAACTTTTGTTCATGGAAGAATGTGTTAACTTTATTAATTGTTCTTTCTAGTAAAAGTGTAAAACTAGCTTCCACCCTTGTCAACGCTTTCTATCTTTAATTCTTTTTTATGGCATTGTTACTCAAGTGTTAAAACTTTGATGACAGACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAGGTACCCTTAGTTTCGAACAACTAGTTTTACTTCCAAAAGTATCATGACTCTGATGCATCACGATGTTCAACCACTCTTACCTTACATGATCCTGATATTTTTCTTTCCTTCTAATCCTTTTTTTGTCAACGCTTCATATTAGTCCACTAATTCTATTGCTGAGATTACCTTCTCGAAGACTTAGATTCAGTCAAATCTAGTTTAGTGCGAGTGTTAGGTGCATCAACTACAGACTGGTTACTGTACTTTTCTATTGCTGAGATCTCCTTCTCTAGGATCTATCAATTCATGAGACCAAAAAAAAAAAAATGGAACAGCATTGACTCTTGAAATCATACTTATAAGATGTGTAATGCGATACAAGTACTGAGGAACTCTTCAGTTTTTTTTTGTTTGTTGTGGGGCAGGGGGGATTGGCCAGTATGTGCAAGTACTGAGGAACTCCCTTTCACCTGTCTACCTACTGCAGGAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGGACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAACAGAGGCTGAAATACTTAGTGGTGGCATTATGAAGGCATCAAAAACTTTTGACC</genome_strand>
        <mrna_strand>CATATGGAGAGTTTTCTGACGATTTACATCCATTTAATAACAGCAGATCCACCAACAGTAATTTCATTCTGAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGGACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAACAGAGGCTGAAATACTTAGTGGTGGCATTATGAAAGCATCAAAAACTTTTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265330" ref_strand="+" ref_description="SGN-E265330 [cLEI-9-L3]">
      <seq>gttcattctgaagggaaatgtggttgttgcaaataatccatgcttgcatcctggtgatatgcgtgttttaaaggctgtaaatgttcgagcgctgcaccacatggtagattgtgttgtattccctcagaatggaaaaagacctcctccgaatgaatgttctgggagtgatttggatggggatatctactttgtttgctgggatcaagacatgatcccgccaaggcaagtccagccgatggaatatcctccagcacccatcatacagttggaccatgatgtcacaattgaggaagttgaagagtacttcaccaactatattgtgaatgacagtttgggaatcatagcaaatgcccatgtcgtatttgcagacagagaacctgatatggccatgagtgatccatgcaaaaaacttgctgagctcttttcaattgcagtggactttccaaagactggtgttcccgctgaaataccatctcagttgcgccctaaagaatacccagacttcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="102141" stop="104353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102440" g_stop="102577" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102578" i_stop="103212" i_length="635">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103213" g_stop="103363" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="289" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103364" i_stop="103832" i_length="469">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103833" g_stop="104053" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="510" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E265330" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102440" e_stop="102577"/>
          <exon e_start="103213" e_stop="103363"/>
          <exon e_start="103833" e_stop="104053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTCTGAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAGGTAAATTTTACGTTGGAAACCTATTAACTGTTTACTTGTAAGTTTATAGAAGGCTTAACCATTTCTTGCCTGGTCTTTTACTAATGCTCTAATCCAAATTAGTTTCAAAGATAGTCAAATTGATTCTCGGGAAGCAAAAAGCGACAGAGGGAGTAATTGACTGTCTTTCCTTAATTAGTTAAGATTCACTTGTATAATATCCCCTTCTCATGAGTCATGAGATGTAAAGGCATATTGAAATACAAAGAAGTCTTTTCTTCCTTCCCATATTCTACACTAACTTATGGGAGGAAATCATTTTCCTACTGGCTACGCAATTATTCAACTTGTAACTCTCCAGACTAGGTATGTATTTCAACTGCCTCCCTACCTCTGAGGCAGAGGTAATTTGCGTACACTCTACTCTCCTCAGACCTCACTTTGTGGTATCTTACTGGGTATGTTTTTGTTGTATAATTCATCAGTACTTCATCTATCTGGAATATTCTCAACTTTTGTTCATGGAAGAATGTGTTAACTTTATTAATTGTTCTTTCTAGTAAAAGTGTAAAACTAGCTTCCACCCTTGTCAACGCTTTCTATCTTTAATTCTTTTTTATGGCATTGTTACTCAAGTGTTAAAACTTTGATGACAGACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAGGTACCCTTAGTTTCGAACAACTAGTTTTACTTCCAAAAGTATCATGACTCTGATGCATCACGATGTTCAACCACTCTTACCTTACATGATCCTGATATTTTTCTTTCCTTCTAATCCTTTTTTTGTCAACGCTTCATATTAGTCCACTAATTCTATTGCTGAGATTACCTTCTCGAAGACTTAGATTCAGTCAAATCTAGTTTAGTGCGAGTGTTAGGTGCATCAACTACAGACTGGTTACTGTACTTTTCTATTGCTGAGATCTCCTTCTCTAGGATCTATCAATTCATGAGACCAAAAAAAAAAAAATGGAACAGCATTGACTCTTGAAATCATACTTATAAGATGTGTAATGCGATACAAGTACTGAGGAACTCTTCAGTTTTTTTTTGTTTGTTGTGGGGCAGGGGGGATTGGCCAGTATGTGCAAGTACTGAGGAACTCCCTTTCACCTGTCTACCTACTGCAGGAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGA</genome_strand>
        <mrna_strand>GTTCATTCTGAAGGGAAATGTGGTTGTTGCAAATAATCCATGCTTGCATCCTGGTGATATGCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAATGGAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCCTCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCATCATACAGTTGGACCATGATGTCACAATTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369878" ref_strand="+" ref_description="SGN-E369878 [TUS-26-H13]">
      <seq>cattctgaagggaaatgtggttgttgcaaaaaatccatgcttgcatcctggtgatattcgtgttttaaaggctgtaaatgttcgagcgctgcaccacatggtagattgtgttgtattccctcagaaaggaaaaagacctcatccgaatgaatgttctgggagtgatttggatggggatatctactttgtttgctgggatcaagacatgatcccgccaaggcaagtccagccgatggaatatcctccagcacccagcatacagttggaccatgatgtcacaattgaggaagttgaagagtacttcaccaactatattgtgaatgacagtttgggaatcatagcaaatgcccatgtcgtatttgcagacagagaacctgatatggccatgagtgatccatgcaaaaaacttgctgagctcttttcaattgcagtggactttccaaagactggtgttcccgctgaaataccatctcagttgcgccctaaagaatacccagacttcatggataagccggacaagaccagctatatctcagaaagagttattggaaagcttttcaggaaagtgaaggacaaagcacctcaggctagctctatcgcgaccttcacaagagatgttgcaaggagatcatatgatgctgatatggaagttgatggatttgaagattacattgacgaagcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="102143" stop="104532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102443" g_stop="102577" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102578" i_stop="103212" i_length="635">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103213" g_stop="103363" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="286" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103364" i_stop="103832" i_length="469">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103833" g_stop="104232" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="686" r_length="400" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E369878" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102443" e_stop="102577"/>
          <exon e_start="103213" e_stop="103363"/>
          <exon e_start="103833" e_stop="104232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCTGAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAGGTAAATTTTACGTTGGAAACCTATTAACTGTTTACTTGTAAGTTTATAGAAGGCTTAACCATTTCTTGCCTGGTCTTTTACTAATGCTCTAATCCAAATTAGTTTCAAAGATAGTCAAATTGATTCTCGGGAAGCAAAAAGCGACAGAGGGAGTAATTGACTGTCTTTCCTTAATTAGTTAAGATTCACTTGTATAATATCCCCTTCTCATGAGTCATGAGATGTAAAGGCATATTGAAATACAAAGAAGTCTTTTCTTCCTTCCCATATTCTACACTAACTTATGGGAGGAAATCATTTTCCTACTGGCTACGCAATTATTCAACTTGTAACTCTCCAGACTAGGTATGTATTTCAACTGCCTCCCTACCTCTGAGGCAGAGGTAATTTGCGTACACTCTACTCTCCTCAGACCTCACTTTGTGGTATCTTACTGGGTATGTTTTTGTTGTATAATTCATCAGTACTTCATCTATCTGGAATATTCTCAACTTTTGTTCATGGAAGAATGTGTTAACTTTATTAATTGTTCTTTCTAGTAAAAGTGTAAAACTAGCTTCCACCCTTGTCAACGCTTTCTATCTTTAATTCTTTTTTATGGCATTGTTACTCAAGTGTTAAAACTTTGATGACAGACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAGGTACCCTTAGTTTCGAACAACTAGTTTTACTTCCAAAAGTATCATGACTCTGATGCATCACGATGTTCAACCACTCTTACCTTACATGATCCTGATATTTTTCTTTCCTTCTAATCCTTTTTTTGTCAACGCTTCATATTAGTCCACTAATTCTATTGCTGAGATTACCTTCTCGAAGACTTAGATTCAGTCAAATCTAGTTTAGTGCGAGTGTTAGGTGCATCAACTACAGACTGGTTACTGTACTTTTCTATTGCTGAGATCTCCTTCTCTAGGATCTATCAATTCATGAGACCAAAAAAAAAAAAATGGAACAGCATTGACTCTTGAAATCATACTTATAAGATGTGTAATGCGATACAAGTACTGAGGAACTCTTCAGTTTTTTTTTGTTTGTTGTGGGGCAGGGGGGATTGGCCAGTATGTGCAAGTACTGAGGAACTCCCTTTCACCTGTCTACCTACTGCAGGAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGGACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTG</genome_strand>
        <mrna_strand>CATTCTGAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGGACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258863" ref_strand="+" ref_description="SGN-E258863 [cLEG-41-O11]">
      <seq>cattctgaagggaaatgtggttgttgcaaaaaatccatgcttgcatcctggtgatattcgtgttttaaaggctgtaaatgttcgagcgctgcaccacatggtagattgtgttgtattccctcagaaaggaaaaagacctcatccgaatgaatgttctgggagtgatttggatggggatatctactttgtttgctgggatcaagacatgatcccgccaaggcaagtccagccgatggaatatcctccagcacccatcatacagttggaccatgatgtcacaattgaggaagttgaagagtacttcaccaactatattgtgaatgacagtttgggaatcatagcaaatgcccatgtcgtatttgcagacagagaacctgatatggccatgagtgatccatgcaaaaaacttgctgagctcttttcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="102143" stop="104273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102443" g_stop="102577" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102578" i_stop="103212" i_length="635">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103213" g_stop="103363" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="286" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103364" i_stop="103832" i_length="469">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103833" g_stop="103973" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="427" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E258863" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102443" e_stop="102577"/>
          <exon e_start="103213" e_stop="103363"/>
          <exon e_start="103833" e_stop="103973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCTGAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAGGTAAATTTTACGTTGGAAACCTATTAACTGTTTACTTGTAAGTTTATAGAAGGCTTAACCATTTCTTGCCTGGTCTTTTACTAATGCTCTAATCCAAATTAGTTTCAAAGATAGTCAAATTGATTCTCGGGAAGCAAAAAGCGACAGAGGGAGTAATTGACTGTCTTTCCTTAATTAGTTAAGATTCACTTGTATAATATCCCCTTCTCATGAGTCATGAGATGTAAAGGCATATTGAAATACAAAGAAGTCTTTTCTTCCTTCCCATATTCTACACTAACTTATGGGAGGAAATCATTTTCCTACTGGCTACGCAATTATTCAACTTGTAACTCTCCAGACTAGGTATGTATTTCAACTGCCTCCCTACCTCTGAGGCAGAGGTAATTTGCGTACACTCTACTCTCCTCAGACCTCACTTTGTGGTATCTTACTGGGTATGTTTTTGTTGTATAATTCATCAGTACTTCATCTATCTGGAATATTCTCAACTTTTGTTCATGGAAGAATGTGTTAACTTTATTAATTGTTCTTTCTAGTAAAAGTGTAAAACTAGCTTCCACCCTTGTCAACGCTTTCTATCTTTAATTCTTTTTTATGGCATTGTTACTCAAGTGTTAAAACTTTGATGACAGACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAGGTACCCTTAGTTTCGAACAACTAGTTTTACTTCCAAAAGTATCATGACTCTGATGCATCACGATGTTCAACCACTCTTACCTTACATGATCCTGATATTTTTCTTTCCTTCTAATCCTTTTTTTGTCAACGCTTCATATTAGTCCACTAATTCTATTGCTGAGATTACCTTCTCGAAGACTTAGATTCAGTCAAATCTAGTTTAGTGCGAGTGTTAGGTGCATCAACTACAGACTGGTTACTGTACTTTTCTATTGCTGAGATCTCCTTCTCTAGGATCTATCAATTCATGAGACCAAAAAAAAAAAAATGGAACAGCATTGACTCTTGAAATCATACTTATAAGATGTGTAATGCGATACAAGTACTGAGGAACTCTTCAGTTTTTTTTTGTTTGTTGTGGGGCAGGGGGGATTGGCCAGTATGTGCAAGTACTGAGGAACTCCCTTTCACCTGTCTACCTACTGCAGGAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATT</genome_strand>
        <mrna_strand>CATTCTGAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCATCATACAGTTGGACCATGATGTCACAATTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249471" ref_strand="+" ref_description="SGN-E249471 [cLEF-56-C18]">
      <seq>tctgaagggaaatgtggttgttgcaaaaaatccatgcttgcatcctggtgatattcgtgttttaaaggctgtaaatgttcgagcgctgcaccacatggtagattgtgttgtattccctcagaaaggaaaaagacctcatccgaatgaatgttctgggagtgatttggatggggatatctactttgtttgctgggatcaagacatgatcccgccaaggcaagtccagccgatggaatatcctccagcacccagcatacagttggaccatgatgtcacaattgaggaagttgaagagtacttcaccaactatattgtgaatgacagtttgggaatcatagcaaatgcccatgtcgtatttgcagacagagaacctgatatggccatgagtgatccatgcaaaaaacttgctgagctcttttcaattgcagtggactttccaaagactggtgttcccgctgaaataccatctcagttgcgccctaaagaatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="102146" stop="104340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102446" g_stop="102577" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102578" i_stop="103212" i_length="635">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103213" g_stop="103363" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="283" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103364" i_stop="103832" i_length="469">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103833" g_stop="104040" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="491" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E249471" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102446" e_stop="102577"/>
          <exon e_start="103213" e_stop="103363"/>
          <exon e_start="103833" e_stop="104040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAGGTAAATTTTACGTTGGAAACCTATTAACTGTTTACTTGTAAGTTTATAGAAGGCTTAACCATTTCTTGCCTGGTCTTTTACTAATGCTCTAATCCAAATTAGTTTCAAAGATAGTCAAATTGATTCTCGGGAAGCAAAAAGCGACAGAGGGAGTAATTGACTGTCTTTCCTTAATTAGTTAAGATTCACTTGTATAATATCCCCTTCTCATGAGTCATGAGATGTAAAGGCATATTGAAATACAAAGAAGTCTTTTCTTCCTTCCCATATTCTACACTAACTTATGGGAGGAAATCATTTTCCTACTGGCTACGCAATTATTCAACTTGTAACTCTCCAGACTAGGTATGTATTTCAACTGCCTCCCTACCTCTGAGGCAGAGGTAATTTGCGTACACTCTACTCTCCTCAGACCTCACTTTGTGGTATCTTACTGGGTATGTTTTTGTTGTATAATTCATCAGTACTTCATCTATCTGGAATATTCTCAACTTTTGTTCATGGAAGAATGTGTTAACTTTATTAATTGTTCTTTCTAGTAAAAGTGTAAAACTAGCTTCCACCCTTGTCAACGCTTTCTATCTTTAATTCTTTTTTATGGCATTGTTACTCAAGTGTTAAAACTTTGATGACAGACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAGGTACCCTTAGTTTCGAACAACTAGTTTTACTTCCAAAAGTATCATGACTCTGATGCATCACGATGTTCAACCACTCTTACCTTACATGATCCTGATATTTTTCTTTCCTTCTAATCCTTTTTTTGTCAACGCTTCATATTAGTCCACTAATTCTATTGCTGAGATTACCTTCTCGAAGACTTAGATTCAGTCAAATCTAGTTTAGTGCGAGTGTTAGGTGCATCAACTACAGACTGGTTACTGTACTTTTCTATTGCTGAGATCTCCTTCTCTAGGATCTATCAATTCATGAGACCAAAAAAAAAAAAATGGAACAGCATTGACTCTTGAAATCATACTTATAAGATGTGTAATGCGATACAAGTACTGAGGAACTCTTCAGTTTTTTTTTGTTTGTTGTGGGGCAGGGGGGATTGGCCAGTATGTGCAAGTACTGAGGAACTCCCTTTCACCTGTCTACCTACTGCAGGAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACC</genome_strand>
        <mrna_strand>TCTGAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203584" ref_strand="+" ref_description="SGN-E203584 [cLEC-15-G23]">
      <seq>aaaaaatccatgcttgcatcctggtgatattcgtgttttaaaggctgtaaatgttcgagcgctgcaccacatggtagattgtgttgtattccctcagaaaggaaaaagacctcatccgaatgaatgttctgggagtgatttggatggggatatctactttgtttgctgggatcaagacatgatcccgccaaggcaagtccagccgatggaatatcctccagcacccagcatacagttggaccatgatgtcacaattgaggaagttgaagagtacttcaccaactatattgtgaatgacagtttgggaatcatagcaaatgcccatgtcgtatttgcagacagagaacctgatatggccatgagtgatccatgcaaaaaacttgctgagctcttttcaattgcagtggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="102170" stop="104282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102470" g_stop="102577" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102578" i_stop="103212" i_length="635">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103213" g_stop="103363" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="259" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103364" i_stop="103832" i_length="469">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103833" g_stop="103982" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="409" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E203584" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102470" e_stop="102577"/>
          <exon e_start="103213" e_stop="103363"/>
          <exon e_start="103833" e_stop="103982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAGGTAAATTTTACGTTGGAAACCTATTAACTGTTTACTTGTAAGTTTATAGAAGGCTTAACCATTTCTTGCCTGGTCTTTTACTAATGCTCTAATCCAAATTAGTTTCAAAGATAGTCAAATTGATTCTCGGGAAGCAAAAAGCGACAGAGGGAGTAATTGACTGTCTTTCCTTAATTAGTTAAGATTCACTTGTATAATATCCCCTTCTCATGAGTCATGAGATGTAAAGGCATATTGAAATACAAAGAAGTCTTTTCTTCCTTCCCATATTCTACACTAACTTATGGGAGGAAATCATTTTCCTACTGGCTACGCAATTATTCAACTTGTAACTCTCCAGACTAGGTATGTATTTCAACTGCCTCCCTACCTCTGAGGCAGAGGTAATTTGCGTACACTCTACTCTCCTCAGACCTCACTTTGTGGTATCTTACTGGGTATGTTTTTGTTGTATAATTCATCAGTACTTCATCTATCTGGAATATTCTCAACTTTTGTTCATGGAAGAATGTGTTAACTTTATTAATTGTTCTTTCTAGTAAAAGTGTAAAACTAGCTTCCACCCTTGTCAACGCTTTCTATCTTTAATTCTTTTTTATGGCATTGTTACTCAAGTGTTAAAACTTTGATGACAGACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAGGTACCCTTAGTTTCGAACAACTAGTTTTACTTCCAAAAGTATCATGACTCTGATGCATCACGATGTTCAACCACTCTTACCTTACATGATCCTGATATTTTTCTTTCCTTCTAATCCTTTTTTTGTCAACGCTTCATATTAGTCCACTAATTCTATTGCTGAGATTACCTTCTCGAAGACTTAGATTCAGTCAAATCTAGTTTAGTGCGAGTGTTAGGTGCATCAACTACAGACTGGTTACTGTACTTTTCTATTGCTGAGATCTCCTTCTCTAGGATCTATCAATTCATGAGACCAAAAAAAAAAAAATGGAACAGCATTGACTCTTGAAATCATACTTATAAGATGTGTAATGCGATACAAGTACTGAGGAACTCTTCAGTTTTTTTTTGTTTGTTGTGGGGCAGGGGGGATTGGCCAGTATGTGCAAGTACTGAGGAACTCCCTTTCACCTGTCTACCTACTGCAGGAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGAC</genome_strand>
        <mrna_strand>AAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411292" ref_strand="+" ref_description="SGN-E411292 [STM-14-O6]">
      <seq>gtgatattcgtgttttaagggctgtagatgttccagcgctgcaccacatggtagattgtgttgtattcccccagaaaggaaaaagacctcatccgaatgaatgttctgggagtgatttggatggggatatctactttgtttgctgggatcaagacatgattccgccaaggcaagttcaggcgatggaatatcctccagcacccagcatacagttggatcataatgtcacaattgaggaagttgaagagtacttcaccaactatattgtgaacgacagtttgggaatcatagcaaatgcccatgtcgtatttgcagacagagaacctgatatggccatgagtgatccatgcaaaaaacttgctgagctcttttcaattgcagtggactttccaaagactggtgttcctgctgaaataccatctcagttgcgccctaaagaatacccagacttcatggataagccgccagacaagacaacctatatctcagaaagagttattggaaaacttttcaggaaagtgaaggacaaagcacctcaggctagctctattgcgatcttcacaagggatgttgcaaggagatcatatgatgctgatttggaagttgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="102193" stop="104505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102493" g_stop="102577" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102578" i_stop="103212" i_length="635">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103213" g_stop="103363" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="236" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103364" i_stop="103832" i_length="469">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.888" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103833" g_stop="104205" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="612" r_length="376" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E411292" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102493" e_stop="102577"/>
          <exon e_start="103213" e_stop="103363"/>
          <exon e_start="103833" e_stop="104205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAGGTAAATTTTACGTTGGAAACCTATTAACTGTTTACTTGTAAGTTTATAGAAGGCTTAACCATTTCTTGCCTGGTCTTTTACTAATGCTCTAATCCAAATTAGTTTCAAAGATAGTCAAATTGATTCTCGGGAAGCAAAAAGCGACAGAGGGAGTAATTGACTGTCTTTCCTTAATTAGTTAAGATTCACTTGTATAATATCCCCTTCTCATGAGTCATGAGATGTAAAGGCATATTGAAATACAAAGAAGTCTTTTCTTCCTTCCCATATTCTACACTAACTTATGGGAGGAAATCATTTTCCTACTGGCTACGCAATTATTCAACTTGTAACTCTCCAGACTAGGTATGTATTTCAACTGCCTCCCTACCTCTGAGGCAGAGGTAATTTGCGTACACTCTACTCTCCTCAGACCTCACTTTGTGGTATCTTACTGGGTATGTTTTTGTTGTATAATTCATCAGTACTTCATCTATCTGGAATATTCTCAACTTTTGTTCATGGAAGAATGTGTTAACTTTATTAATTGTTCTTTCTAGTAAAAGTGTAAAACTAGCTTCCACCCTTGTCAACGCTTTCTATCTTTAATTCTTTTTTATGGCATTGTTACTCAAGTGTTAAAACTTTGATGACAGACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAGGTACCCTTAGTTTCGAACAACTAGTTTTACTTCCAAAAGTATCATGACTCTGATGCATCACGATGTTCAACCACTCTTACCTTACATGATCCTGATATTTTTCTTTCCTTCTAATCCTTTTTTTGTCAACGCTTCATATTAGTCCACTAATTCTATTGCTGAGATTACCTTCTCGAAGACTTAGATTCAGTCAAATCTAGTTTAGTGCGAGTGTTAGGTGCATCAACTACAGACTGGTTACTGTACTTTTCTATTGCTGAGATCTCCTTCTCTAGGATCTATCAATTCATGAGACCAAAAAAAAAAAAATGGAACAGCATTGACTCTTGAAATCATACTTATAAGATGTGTAATGCGATACAAGTACTGAGGAACTCTTCAGTTTTTTTTTGTTTGTTGTGGGGCAGGGGGGATTGGCCAGTATGTGCAAGTACTGAGGAACTCCCTTTCACCTGTCTACCTACTGCAGGAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCG---GACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGAT</genome_strand>
        <mrna_strand>GTGATATTCGTGTTTTAAGGGCTGTAGATGTTCCAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCCCAGAAAGGAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATTCCGCCAAGGCAAGTTCAGGCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGATCATAATGTCACAATTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGAAGAGTACTTCACCAACTATATTGTGAACGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCTGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGCCAGACAAGACAACCTATATCTCAGAAAGAGTTATTGGAAAACTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATTGCGATCTTCACAAGGGATGTTGCAAGGAGATCATATGATGCTGATTTGGAAGTTGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468388" ref_strand="+" ref_description="SGN-E468388 [cSTB-3-D19]">
      <seq>gtgatattcgtgttttaagggctgtagatgttccagcgctgcaccacatggtagattgtgttgtattcccccagaaaggaaaaagacctcatccgaatgaatgttctgggagtgatttggatggggatatctactttgtttgctgggatcaagacatgattccgccaaggcaagttcaggcgatggaatatcctccagcacccagcatacagttggatcataatgtcacaattgaggaagttgaagagtacttcaccaactatattgtgaacgacagtttgggaatcatagcaaatgcccatgtcgtatttgcagacagagaacctgatatggccatgagtgatccatgcaaaaaacttgctgagctcttttcaattgcagtggactttccaaagactggtgttcctgctgaaataccatctcagttgcgccctaaagaatacccagacttcatggataagccgccagacaagacaacctatatctcagaaagagttattggaaaacttttcaggaaagtgaaggacaaagcacctcaggctagctctattgcgatcttcacaagggatgttgcaaggagatcatatgatgctgatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="102193" stop="104494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102493" g_stop="102577" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102578" i_stop="103212" i_length="635">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103213" g_stop="103363" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="236" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103364" i_stop="103832" i_length="469">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.888" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103833" g_stop="104194" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="601" r_length="365" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E468388" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102493" e_stop="102577"/>
          <exon e_start="103213" e_stop="103363"/>
          <exon e_start="103833" e_stop="104194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAGGTAAATTTTACGTTGGAAACCTATTAACTGTTTACTTGTAAGTTTATAGAAGGCTTAACCATTTCTTGCCTGGTCTTTTACTAATGCTCTAATCCAAATTAGTTTCAAAGATAGTCAAATTGATTCTCGGGAAGCAAAAAGCGACAGAGGGAGTAATTGACTGTCTTTCCTTAATTAGTTAAGATTCACTTGTATAATATCCCCTTCTCATGAGTCATGAGATGTAAAGGCATATTGAAATACAAAGAAGTCTTTTCTTCCTTCCCATATTCTACACTAACTTATGGGAGGAAATCATTTTCCTACTGGCTACGCAATTATTCAACTTGTAACTCTCCAGACTAGGTATGTATTTCAACTGCCTCCCTACCTCTGAGGCAGAGGTAATTTGCGTACACTCTACTCTCCTCAGACCTCACTTTGTGGTATCTTACTGGGTATGTTTTTGTTGTATAATTCATCAGTACTTCATCTATCTGGAATATTCTCAACTTTTGTTCATGGAAGAATGTGTTAACTTTATTAATTGTTCTTTCTAGTAAAAGTGTAAAACTAGCTTCCACCCTTGTCAACGCTTTCTATCTTTAATTCTTTTTTATGGCATTGTTACTCAAGTGTTAAAACTTTGATGACAGACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAGGTACCCTTAGTTTCGAACAACTAGTTTTACTTCCAAAAGTATCATGACTCTGATGCATCACGATGTTCAACCACTCTTACCTTACATGATCCTGATATTTTTCTTTCCTTCTAATCCTTTTTTTGTCAACGCTTCATATTAGTCCACTAATTCTATTGCTGAGATTACCTTCTCGAAGACTTAGATTCAGTCAAATCTAGTTTAGTGCGAGTGTTAGGTGCATCAACTACAGACTGGTTACTGTACTTTTCTATTGCTGAGATCTCCTTCTCTAGGATCTATCAATTCATGAGACCAAAAAAAAAAAAATGGAACAGCATTGACTCTTGAAATCATACTTATAAGATGTGTAATGCGATACAAGTACTGAGGAACTCTTCAGTTTTTTTTTGTTTGTTGTGGGGCAGGGGGGATTGGCCAGTATGTGCAAGTACTGAGGAACTCCCTTTCACCTGTCTACCTACTGCAGGAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCG---GACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGA</genome_strand>
        <mrna_strand>GTGATATTCGTGTTTTAAGGGCTGTAGATGTTCCAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCCCAGAAAGGAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATTCCGCCAAGGCAAGTTCAGGCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGATCATAATGTCACAATTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGAAGAGTACTTCACCAACTATATTGTGAACGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCTGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGCCAGACAAGACAACCTATATCTCAGAAAGAGTTATTGGAAAACTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATTGCGATCTTCACAAGGGATGTTGCAAGGAGATCATATGATGCTGATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450006" ref_strand="+" ref_description="SGN-E450006 [cSTS-8-I19]">
      <seq>cgagttttaagggctgtagatgttccagcgctgcaccacatggtagattgtgttgtattcccccagaaaggaaaaagacctcatccgaatgaatgttctgggagtgatttggatggagatatctactttgtttgctgggatcaagacatgattccaccaaggcaagtccaaccgatggaatatcctccagcacccagcatacagttggatcatgatgtcacaattgaggaagttgaagagtacttcaccaactatattgtgaatgacagtttgggaatcatagcaaatgcccatgtcgtatttgcagacagagaacctgatatggccatgagtgatccatgcaaaaaacttgctgagctcttttcaattgcagtggactttccaaagactggtgttcctgctgaaataccatctcagttgcgccctaaagaatacccagacttcatggataagccgccagacaagacaacctatatctcagaaagagttattggaaagctttacaggaaagtgaaggacaaagcacctcaggctagctctactgcgatcttcacaagggatgttgcaaggagatcatatgatgctgatttggaagttgatggatttgaagattacattgacgaagcttttgactacaaaactgaatatgacaacaagctgggtaatttaatggactactatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="102201" stop="104585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102501" g_stop="102577" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102578" i_stop="103212" i_length="635">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103213" g_stop="103363" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="228" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103364" i_stop="103832" i_length="469">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103833" g_stop="104285" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="684" r_length="456" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E450006" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102501" e_stop="102577"/>
          <exon e_start="103213" e_stop="103363"/>
          <exon e_start="103833" e_stop="104285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAGGTAAATTTTACGTTGGAAACCTATTAACTGTTTACTTGTAAGTTTATAGAAGGCTTAACCATTTCTTGCCTGGTCTTTTACTAATGCTCTAATCCAAATTAGTTTCAAAGATAGTCAAATTGATTCTCGGGAAGCAAAAAGCGACAGAGGGAGTAATTGACTGTCTTTCCTTAATTAGTTAAGATTCACTTGTATAATATCCCCTTCTCATGAGTCATGAGATGTAAAGGCATATTGAAATACAAAGAAGTCTTTTCTTCCTTCCCATATTCTACACTAACTTATGGGAGGAAATCATTTTCCTACTGGCTACGCAATTATTCAACTTGTAACTCTCCAGACTAGGTATGTATTTCAACTGCCTCCCTACCTCTGAGGCAGAGGTAATTTGCGTACACTCTACTCTCCTCAGACCTCACTTTGTGGTATCTTACTGGGTATGTTTTTGTTGTATAATTCATCAGTACTTCATCTATCTGGAATATTCTCAACTTTTGTTCATGGAAGAATGTGTTAACTTTATTAATTGTTCTTTCTAGTAAAAGTGTAAAACTAGCTTCCACCCTTGTCAACGCTTTCTATCTTTAATTCTTTTTTATGGCATTGTTACTCAAGTGTTAAAACTTTGATGACAGACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAGGTACCCTTAGTTTCGAACAACTAGTTTTACTTCCAAAAGTATCATGACTCTGATGCATCACGATGTTCAACCACTCTTACCTTACATGATCCTGATATTTTTCTTTCCTTCTAATCCTTTTTTTGTCAACGCTTCATATTAGTCCACTAATTCTATTGCTGAGATTACCTTCTCGAAGACTTAGATTCAGTCAAATCTAGTTTAGTGCGAGTGTTAGGTGCATCAACTACAGACTGGTTACTGTACTTTTCTATTGCTGAGATCTCCTTCTCTAGGATCTATCAATTCATGAGACCAAAAAAAAAAAAATGGAACAGCATTGACTCTTGAAATCATACTTATAAGATGTGTAATGCGATACAAGTACTGAGGAACTCTTCAGTTTTTTTTTGTTTGTTGTGGGGCAGGGGGGATTGGCCAGTATGTGCAAGTACTGAGGAACTCCCTTTCACCTGTCTACCTACTGCAGGAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCG---GACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGC</genome_strand>
        <mrna_strand>CGAGTTTTAAGGGCTGTAGATGTTCCAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCCCAGAAAGGAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGAGATATCTACTTTGTTTGCTGGGATCAAGACATGATTCCACCAAGGCAAGTCCAACCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGATCATGATGTCACAATTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCTGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGCCAGACAAGACAACCTATATCTCAGAAAGAGTTATTGGAAAGCTTTACAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTACTGCGATCTTCACAAGGGATGTTGCAAGGAGATCATATGATGCTGATTTGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249397" ref_strand="+" ref_description="SGN-E249397 [cLEF-50-H7]">
      <seq>atgatcccgccaaggcaagtccagccgatggaatatcctccagcacccagcatacagttggaccatgatgtcacaattgaggaagttgaagagtacttcaccaactatattgtgaatgacagtttgggaatcatagcaaatgcccatgtcgtatttgcagacagaaaacctgatatggccatgagtgatccatgcaaaaaacttgctgagctcttttcaattgcagtggactttccaaagactggtgttcccgctgaaataccatctcagttgcgccctaaagaatacccagacttcatggataagccggacaagaccagctatatctcagaaagagttattggaaagcttttcaagaaagtgaaggacaaagcacctcaggctagctctatcgcgaccttcacaagaaaagttgcaaggagaacatatgatgctgatatggaagttgatggatttgaagaatacattgacgaagcttttgactacaaaactgaatatgacaacaagctgggtaatttaatggactactatggcataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="102983" stop="104592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103283" g_stop="103363" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103364" i_stop="103832" i_length="469">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103833" g_stop="104292" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="541" r_length="460" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E249397" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103283" e_stop="103363"/>
          <exon e_start="103833" e_stop="104292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAGGTACCCTTAGTTTCGAACAACTAGTTTTACTTCCAAAAGTATCATGACTCTGATGCATCACGATGTTCAACCACTCTTACCTTACATGATCCTGATATTTTTCTTTCCTTCTAATCCTTTTTTTGTCAACGCTTCATATTAGTCCACTAATTCTATTGCTGAGATTACCTTCTCGAAGACTTAGATTCAGTCAAATCTAGTTTAGTGCGAGTGTTAGGTGCATCAACTACAGACTGGTTACTGTACTTTTCTATTGCTGAGATCTCCTTCTCTAGGATCTATCAATTCATGAGACCAAAAAAAAAAAAATGGAACAGCATTGACTCTTGAAATCATACTTATAAGATGTGTAATGCGATACAAGTACTGAGGAACTCTTCAGTTTTTTTTTGTTTGTTGTGGGGCAGGGGGGATTGGCCAGTATGTGCAAGTACTGAGGAACTCCCTTTCACCTGTCTACCTACTGCAGGAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGGACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAA</genome_strand>
        <mrna_strand>ATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAAAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGGACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAAGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAAAAGTTGCAAGGAGAACATATGATGCTGATATGGAAGTTGATGGATTTGAAGAATACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321021" ref_strand="+" ref_description="SGN-E321021 [cTOB-13-P9]">
      <seq>tccagcacccagcataccagttggaccatgatgtcacaattgaggaagttgaagagtaccttcaccaactatattgtgaatgacagtttgggaatcatagcaaatgcccatgtcgtatttgcagacagagaacctgatatggccatgagtgatccatgcaaaaaacttgctgagctcttttcaattgcagtggacctttccaaagactggtgttcccgctgaaatacccatctcagctgcgcccctaaagaataccccagaccttcatggataagccggaccaagacccgctatatctcagaaagagttattggaaagcttttcaggaaagtgaaggacaaagcacctcatgctagctctatcgcgaccttcacaagagatgttgcaaggagatcatatgatgctgatatggaagttgatggatttgaagattacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="103021" stop="104520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103321" g_stop="103363" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103364" i_stop="103832" i_length="469">
            <donor d_prob="0.983" d_score="0.95"/>
            <acceptor a_prob="0.888" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103833" g_stop="104220" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="439" r_length="395" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E321021" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103321" e_stop="103363"/>
          <exon e_start="103833" e_stop="104220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGCACCCAGCATAC-AGTTGGACCATGATGTCACAATTGAGGTACCCTTAGTTTCGAACAACTAGTTTTACTTCCAAAAGTATCATGACTCTGATGCATCACGATGTTCAACCACTCTTACCTTACATGATCCTGATATTTTTCTTTCCTTCTAATCCTTTTTTTGTCAACGCTTCATATTAGTCCACTAATTCTATTGCTGAGATTACCTTCTCGAAGACTTAGATTCAGTCAAATCTAGTTTAGTGCGAGTGTTAGGTGCATCAACTACAGACTGGTTACTGTACTTTTCTATTGCTGAGATCTCCTTCTCTAGGATCTATCAATTCATGAGACCAAAAAAAAAAAAATGGAACAGCATTGACTCTTGAAATCATACTTATAAGATGTGTAATGCGATACAAGTACTGAGGAACTCTTCAGTTTTTTTTTGTTTGTTGTGGGGCAGGGGGGATTGGCCAGTATGTGCAAGTACTGAGGAACTCCCTTTCACCTGTCTACCTACTGCAGGAAGTTGAAGAGTA-CTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGA-CTTTCCAAAGACTGGTGTTCCCGCTGAAATA-CCATCTCAGTTGCG-CCCTAAAGAATA-CCCAGA-CTTCATGGATAAGCCGGA-CAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTG</genome_strand>
        <mrna_strand>TCCAGCACCCAGCATACCAGTTGGACCATGATGTCACAATTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGAAGAGTACCTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACCTTTCCAAAGACTGGTGTTCCCGCTGAAATACCCATCTCAGCTGCGCCCCTAAAGAATACCCCAGACCTTCATGGATAAGCCGGACCAAGACCCGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCATGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448239" ref_strand="+" ref_description="SGN-E448239 [cSTS-2-K4]">
      <seq>cttttcacctgtctgcctactgcaggaagttgaagagtacttcaccaactatattgtgaatgacagtttgggaatcatatcaaatgcccatgtcgtatttgcagacagagaacctgatatggccatgagtgatccatgcaaaaaacttgctgagctctgttcaattgcagtggactttcgaaagactggtgttcctgctgaaataccatctcagttgcgccctaaagaatacccagacttcatggataagccgccagacaagacaacctatatctcagaaagagttattggaaagctttacaggaaagtgaaggacaaagcacctcaggctagctctactgcgatcttcacaagggatgttgcaaggagatcatatgatgctgatttggaagttgatggatttgaagattacattgacgaagcttttgactacaaaactgaatatgacaaacagctgggtaatttaatggactactatggcataaaaacggaggctgaaatacttagtggtggcatcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="103510" stop="104625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103808" g_stop="104325" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E448239" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103808" e_stop="104325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCACCTGTCTACCTACTGCAGGAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCG---GACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAACAGAGGCTGAAATACTTAGTGGTGGCATTATGA</genome_strand>
        <mrna_strand>CTTTTCACCTGTCTGCCTACTGCAGGAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATATCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTGTTCAATTGCAGTGGACTTTCGAAAGACTGGTGTTCCTGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGCCAGACAAGACAACCTATATCTCAGAAAGAGTTATTGGAAAGCTTTACAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTACTGCGATCTTCACAAGGGATGTTGCAAGGAGATCATATGATGCTGATTTGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAAACAGCTGGGTAATTTAATGGACTACTATGGCATAAAAACGGAGGCTGAAATACTTAGTGGTGGCATCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584317" ref_strand="+" ref_description="SGN-E584317 [10140]">
      <seq>gggaatcatatcaatgcccatgtcgtatttgcagacagagaacctgatatggccatgagtgatccatgcaaaaaacttgctgagctctgttcaattgcagtagactttccaaagactggtgttcctgctgaaataccacctcagttgcgccctaaagaatacccagacttcatggataagccgccagacaagacaacctatatctcagaaagagttattggaaagctttacaggaaagtgaaggacaaagctcctcaggctagctctaactgcgatattcacaagggatgttgcaaggagatcatatgatgctgatttggaagttgatggatttgaagattacattgacgaagcttttgactacaaaactgaatatgacaacaaggctgggtaaatttacatggactactatggccataaagaacggaggctgaaatacttagtggttggcatccatgaagacatcaagcagacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="103577" stop="104620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103877" g_stop="104343" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E584317" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103877" e_stop="104343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCG---GACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATC-GCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAA-GCTGGGT-AATTTA-ATGGACTACTATGG-CATAAA-AACAGAGGCTGAAATACTTAGTGG-TGGCAT-TATGAAGGCATCAAAAACTTTTG</genome_strand>
        <mrna_strand>GGGAATCATATC-AATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTGTTCAATTGCAGTAGACTTTCCAAAGACTGGTGTTCCTGCTGAAATACCACCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGCCAGACAAGACAACCTATATCTCAGAAAGAGTTATTGGAAAGCTTTACAGGAAAGTGAAGGACAAAGCTCCTCAGGCTAGCTCTAACTGCGATATTCACAAGGGATGTTGCAAGGAGATCATATGATGCTGATTTGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGGCTGGGTAAATTTACATGGACTACTATGGCCATAAAGAACGGAGGCTGAAATACTTAGTGGTTGGCATCCATGAAGACATCAAGCAGACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253243" ref_strand="+" ref_description="SGN-E253243 [cLEG-26-C9]">
      <seq>aacctgatatggccatgagtgatccatgccaaaaaacttgctgagctcttttcaattgcagtggactttccaaagactggtgttcccgctgaaataccatctcagttgcgccctaaagaatacccagacttcatggataagccggacaagaccagctatatctcagaaagagttattggaaagcttttcaggaaagtgaaggacaaagcacctcaggctagctctatcgcgaccttcacaagagatgttgcaaggagatcatatgatgctgatatggaagttgatggatttgaagattacattgacgaagcttttgactacaaaactgaatatgacaacaagctgggtaatttaatggactactatggcataaaaacagaggctgaaatacttagtggtggcattatgaaggcatcaaaaacttttgaccgcagaaaagatgctgaggccattagtgttgctgtgagggccttgaggaaggaggcaagagcctggttcaagaggcgtaatgatatagatgacatgttaccaaaggcttcggcttggtaccacgttacatatcatcctacatattgnggttgctacaatcaggggttgaaaagagctcatttcattagctttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="103618" stop="104840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103918" g_stop="104540" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E253243" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103918" e_stop="104540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTGATATGGCCATGAGTGATCCATG-CAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGGACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAACAGAGGCTGAAATACTTAGTGGTGGCATTATGAAGGCATCAAAAACTTTTGACCGCAGAAAAGATGCTGAGGCCATTAGTGTTGCTGTGAGGGCCTTGAGGAAGGAGGCAAGAGCCTGGTTCAAGAGGCGTAATGATATAGATGACATGTTACCAAAGGCTTCGGCTTGGTACCACGTTACATATCATCCTACATATTGGGGTTGCTACAATCAGGGGTTGAAAAGAGCTCATTTCATTAGCTTTCCC</genome_strand>
        <mrna_strand>AACCTGATATGGCCATGAGTGATCCATGCCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGGACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAACAGAGGCTGAAATACTTAGTGGTGGCATTATGAAGGCATCAAAAACTTTTGACCGCAGAAAAGATGCTGAGGCCATTAGTGTTGCTGTGAGGGCCTTGAGGAAGGAGGCAAGAGCCTGGTTCAAGAGGCGTAATGATATAGATGACATGTTACCAAAGGCTTCGGCTTGGTACCACGTTACATATCATCCTACATATTGNGGTTGCTACAATCAGGGGTTGAAAAGAGCTCATTTCATTAGCTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349476" ref_strand="+" ref_description="SGN-E349476 [cTOS-1-C7]">
      <seq>tatcgcgaccttcacaagagatgttgcaaggagatcatatgatgctgatatggaagttgatggatttgaagattacattgacgaagcttttgactacaaaactgaatatgacaacaagctgggtaatttaatggactactatggcataaaaacagaggctgaaatacttagtggtggcattatgaaggcatcaaaaacttttgaccgcagaaaagatgctgaggccattagtgttgctgtgagggccttgaggaaggaggcaagagcctggttcaagaggcgtaatgatatagatgacatgttaccaaaggcttcggcttggtaccacgttacatatcatcctacatattggggttgctacaatcaggggttgaaaagagctcatttcattagctttccctggtgtgtttatgaccagctaatccagattaagaaggacaaagcacgtaacaggccagttctcaacttgtcatctctcagggctcaactgagtcacagattagtgttgaaatgagattccagtcgagcgttaagctgatatatatataatgtaatagggtgtgatcataagaaaactgttatgcattgttgactaccttttgtctttaaaactgcatgaagctgcnacatatatgcagtactctaagaaacagatgtacagctaagtactaatatgtatgtgatttgagtttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="103841" stop="105134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104141" g_stop="104833" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="694" polyA_stop="703"/>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E349476" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104141" e_stop="104833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAACAGAGGCTGAAATACTTAGTGGTGGCATTATGAAGGCATCAAAAACTTTTGACCGCAGAAAAGATGCTGAGGCCATTAGTGTTGCTGTGAGGGCCTTGAGGAAGGAGGCAAGAGCCTGGTTCAAGAGGCGTAATGATATAGATGACATGTTACCAAAGGCTTCGGCTTGGTACCACGTTACATATCATCCTACATATTGGGGTTGCTACAATCAGGGGTTGAAAAGAGCTCATTTCATTAGCTTTCCCTGGTGTGTTTATGACCAGCTAATCCAGATTAAGAAGGACAAAGCACGTAACAGGCCAGTTCTCAACTTGTCATCTCTCAGGGCTCAACTGAGTCACAGATTAGTGTTGAAATGAGATTCCAGTCGAGCGTTAAGCTGATATATATATAATGTAATAGGGTGTGATCATAAGAAAACTGTTATGCATTGTTGACTACCTTTTGTCTTTAAAACTGCATGAAGCTGCAACATATATGCAGTACTCTAAGAAACAGATGTACAGCTAAGTACTAATATGTATGTGATTTGAGTTTC</genome_strand>
        <mrna_strand>TATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAACAGAGGCTGAAATACTTAGTGGTGGCATTATGAAGGCATCAAAAACTTTTGACCGCAGAAAAGATGCTGAGGCCATTAGTGTTGCTGTGAGGGCCTTGAGGAAGGAGGCAAGAGCCTGGTTCAAGAGGCGTAATGATATAGATGACATGTTACCAAAGGCTTCGGCTTGGTACCACGTTACATATCATCCTACATATTGGGGTTGCTACAATCAGGGGTTGAAAAGAGCTCATTTCATTAGCTTTCCCTGGTGTGTTTATGACCAGCTAATCCAGATTAAGAAGGACAAAGCACGTAACAGGCCAGTTCTCAACTTGTCATCTCTCAGGGCTCAACTGAGTCACAGATTAGTGTTGAAATGAGATTCCAGTCGAGCGTTAAGCTGATATATATATAATGTAATAGGGTGTGATCATAAGAAAACTGTTATGCATTGTTGACTACCTTTTGTCTTTAAAACTGCATGAAGCTGCNACATATATGCAGTACTCTAAGAAACAGATGTACAGCTAAGTACTAATATGTATGTGATTTGAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272988" ref_strand="+" ref_description="SGN-E272988 [cLEM-25-I10]">
      <seq>cttcacaagagatgttgcaaggagatcatatgatgctgatatggaagtcgatggatttgaagattacattgacaaagcttttgactacaaaactgaatatgacaacaagctgggtaatttaatggactactatggcataaaaacagaggctgaaatacttactggtggcattatgaaggcatcaaaaacttctgaccgcagaaaagatgctgaggccattactgttgctgtgagggccttgacgaatgaggcaagagcctggttcaagaggcgtaatgatatagatgacatgttaccaaaggcttcggcttggtaccacgttacatatcatcctacatattggggttgctacaatcatgggttgaaaagagctcatttcattagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="103850" stop="104835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104150" g_stop="104535" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E272988" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104150" e_stop="104535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAACAGAGGCTGAAATACTTAGTGGTGGCATTATGAAGGCATCAAAAACTTTTGACCGCAGAAAAGATGCTGAGGCCATTAGTGTTGCTGTGAGGGCCTTGAGGAAGGAGGCAAGAGCCTGGTTCAAGAGGCGTAATGATATAGATGACATGTTACCAAAGGCTTCGGCTTGGTACCACGTTACATATCATCCTACATATTGGGGTTGCTACAATCAGGGGTTGAAAAGAGCTCATTTCATTAGCT</genome_strand>
        <mrna_strand>CTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTCGATGGATTTGAAGATTACATTGACAAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAACAGAGGCTGAAATACTTACTGGTGGCATTATGAAGGCATCAAAAACTTCTGACCGCAGAAAAGATGCTGAGGCCATTACTGTTGCTGTGAGGGCCTTGACGAATGAGGCAAGAGCCTGGTTCAAGAGGCGTAATGATATAGATGACATGTTACCAAAGGCTTCGGCTTGGTACCACGTTACATATCATCCTACATATTGGGGTTGCTACAATCATGGGTTGAAAAGAGCTCATTTCATTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616224" ref_strand="+" ref_description="SGN-E616224 [66031]">
      <seq>atacttagtggtggcatcatgaaggcatcaaaaacttttgaccgcagaaaagatgctgaggccattagtgttgctgtgagggccttgaggaaggaagcaaggacctggttcaagaggcgtaatgatatagatgacatgttaccaaaggcttcggcttggtaccacgttacatatcatcctacatattggggttgctacaatcaggggttgaaaagagatcatttcattagctttccctggtgtgtttatgaccagctaatccagattaagaaggagaaagcacgtaacaggccagttctcaatttgtcatctctcagggctcagctgagtcacaaattagtgttgaaatgagatttcagtcaagcgtttagctgatatatatataatgtaatagggtgtgatcataagaaaactgctatgcgttgttaacaaccttttgtatttaaaactgcatgaacctgtaacatatatgcagtactcttagaaacagctgtacagctaagtactaatatgtatgtgatttgagttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104004" stop="105134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104304" g_stop="104833" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="531" polyA_stop="561"/>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E616224" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104304" e_stop="104833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTTAGTGGTGGCATTATGAAGGCATCAAAAACTTTTGACCGCAGAAAAGATGCTGAGGCCATTAGTGTTGCTGTGAGGGCCTTGAGGAAGGAGGCAAGAGCCTGGTTCAAGAGGCGTAATGATATAGATGACATGTTACCAAAGGCTTCGGCTTGGTACCACGTTACATATCATCCTACATATTGGGGTTGCTACAATCAGGGGTTGAAAAGAGCTCATTTCATTAGCTTTCCCTGGTGTGTTTATGACCAGCTAATCCAGATTAAGAAGGACAAAGCACGTAACAGGCCAGTTCTCAACTTGTCATCTCTCAGGGCTCAACTGAGTCACAGATTAGTGTTGAAATGAGATTCCAGTCGAGCGTTAAGCTGATATATATATAATGTAATAGGGTGTGATCATAAGAAAACTGTTATGCATTGTTGACTACCTTTTGTCTTTAAAACTGCATGAAGCTGCAACATATATGCAGTACTCTAAGAAACAGATGTACAGCTAAGTACTAATATGTATGTGATTTGAGTTTC</genome_strand>
        <mrna_strand>ATACTTAGTGGTGGCATCATGAAGGCATCAAAAACTTTTGACCGCAGAAAAGATGCTGAGGCCATTAGTGTTGCTGTGAGGGCCTTGAGGAAGGAAGCAAGGACCTGGTTCAAGAGGCGTAATGATATAGATGACATGTTACCAAAGGCTTCGGCTTGGTACCACGTTACATATCATCCTACATATTGGGGTTGCTACAATCAGGGGTTGAAAAGAGATCATTTCATTAGCTTTCCCTGGTGTGTTTATGACCAGCTAATCCAGATTAAGAAGGAGAAAGCACGTAACAGGCCAGTTCTCAATTTGTCATCTCTCAGGGCTCAGCTGAGTCACAAATTAGTGTTGAAATGAGATTTCAGTCAAGCGTTTAGCTGATATATATATAATGTAATAGGGTGTGATCATAAGAAAACTGCTATGCGTTGTTAACAACCTTTTGTATTTAAAACTGCATGAACCTGTAACATATATGCAGTACTCTTAGAAACAGCTGTACAGCTAAGTACTAATATGTATGTGATTTGAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411293" ref_strand="+" ref_description="SGN-E411293 [STM-14-O6]">
      <seq>tttttttttttgagaagagagatttactcaaatcacatacatattagtacttagctgtacagctgtttctaagagtactgcatatatgttacaggttcatgcagttttaaatacaaaaggttgttaacaacgcatagcagttttcttatgatcacaccctattacattatatatatatcagctaaacgcttgactgaaatctcatttcaacactaatttgtgactcagctgagccctgagagatgacaaattgagaactggcctgttacgtgctttctccttcttaatctggattagctggtcataaacacaccagggaaagctaatgaaatgatctcttttcaacccctgattgtagcaaccccaatatgtaggatgatatgtaacgtggtaccaagccgaagcctttggtaacatgtcatctatatcattacgcctcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="105130" stop="104113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104856" g_stop="104413" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E411293" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104856" e_stop="104413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACCATGTTTAGAAGAAAGATGAAACTCAAATCACATACATATTAGTACTTAGCTGTACATCTGTTTCTTAGAGTACTGCATATATGTTGCAGCTTCATGCAGTTTTAAAGACAAAAGGTAGTCAACAATGCATAACAGTTTTCTTATGATCACACCCTATTACATTATATATATATCAGCTTAACGCTCGACTGGAATCTCATTTCAACACTAATCTGTGACTCAGTTGAGCCCTGAGAGATGACAAGTTGAGAACTGGCCTGTTACGTGCTTTGTCCTTCTTAATCTGGATTAGCTGGTCATAAACACACCAGGGAAAGCTAATGAAATGAGCTCTTTTCAACCCCTGATTGTAGCAACCCCAATATGTAGGATGATATGTAACGTGGTACCAAGCCGAAGCCTTTGGTAACATGTCATCTATATCATTACGCCTCTTGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTGAGAAGAGAGAT-TTACTCAAATCACATACATATTAGTACTTAGCTGTACAGCTGTTTCTAAGAGTACTGCATATATGTTACAGGTTCATGCAGTTTTAAATACAAAAGGTTGTTAACAACGCATAGCAGTTTTCTTATGATCACACCCTATTACATTATATATATATCAGCTAAACGCTTGACTGAAATCTCATTTCAACACTAATTTGTGACTCAGCTGAGCCCTGAGAGATGACAAATTGAGAACTGGCCTGTTACGTGCTTTCTCCTTCTTAATCTGGATTAGCTGGTCATAAACACACCAGGGAAAGCTAATGAAATGATCTCTTTTCAACCCCTGATTGTAGCAACCCCAATATGTAGGATGATATGTAACGTGGTACCAAGCCGAAGCCTTTGGTAACATGTCATCTATATCATTACGCCTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369877" ref_strand="+" ref_description="SGN-E369877 [TUS-26-H13](-)">
      <seq>tcatcctacatattggggttgctacaatcaggggttgaaaagagctcatttcattagctttccctggtgtgtttatgaccagctaatccagattaagaaggacaaagcacgtaacaggccagttctcaacttgtcatctctcagggctcaactgagtcacagattagtgttgaaatgagattccagtcgagcgttaagctgatatatatataatgtaatagggtgtgatcataagaaaactgttatgcattgttgactaccttttgtctttaaaactgcatgaagctgcaacatatatgcagtactctaagaaacagatgtacagctaagtactaatatgtatgtgatttgagtttcatctttcttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="104177" stop="105149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104477" g_stop="104854" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E369877" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104477" e_stop="104854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCCTACATATTGGGGTTGCTACAATCAGGGGTTGAAAAGAGCTCATTTCATTAGCTTTCCCTGGTGTGTTTATGACCAGCTAATCCAGATTAAGAAGGACAAAGCACGTAACAGGCCAGTTCTCAACTTGTCATCTCTCAGGGCTCAACTGAGTCACAGATTAGTGTTGAAATGAGATTCCAGTCGAGCGTTAAGCTGATATATATATAATGTAATAGGGTGTGATCATAAGAAAACTGTTATGCATTGTTGACTACCTTTTGTCTTTAAAACTGCATGAAGCTGCAACATATATGCAGTACTCTAAGAAACAGATGTACAGCTAAGTACTAATATGTATGTGATTTGAGTTTCATCTTTCTTCTAAACATGGTT</genome_strand>
        <mrna_strand>TCATCCTACATATTGGGGTTGCTACAATCAGGGGTTGAAAAGAGCTCATTTCATTAGCTTTCCCTGGTGTGTTTATGACCAGCTAATCCAGATTAAGAAGGACAAAGCACGTAACAGGCCAGTTCTCAACTTGTCATCTCTCAGGGCTCAACTGAGTCACAGATTAGTGTTGAAATGAGATTCCAGTCGAGCGTTAAGCTGATATATATATAATGTAATAGGGTGTGATCATAAGAAAACTGTTATGCATTGTTGACTACCTTTTGTCTTTAAAACTGCATGAAGCTGCAACATATATGCAGTACTCTAAGAAACAGATGTACAGCTAAGTACTAATATGTATGTGATTTGAGTTTCATCTTTCTTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702933" ref_strand="+" ref_description="SGN-E702933 [FA20AD09]">
      <seq>ggaattggcaaactgtttcactttcttcacttgcatgtggattaaggactaatcgaggcagcgtcaataccctatgtaggacttgatgtagaagcattgagcttggacgagaaggctgaaattttgttcgctgatcaagctataacaactgcagttgtgctaatagtcctttatgctctcaccaagtcatctcaaccacttcctgatgacatatatcgttatgatctgaaggaacctttcaatctccagagaggatggcttttgtgggctggaattggtctagggggagcaataggtgcaattgctttaacaggagtagcaatgtctgctttcaatggtgagccgccacaaagagagactgatgcgcttgctcggttactcccattgataggctcctcaagtatcagcactgcttctctgctgggcattaccggtgtacttgctccaattctcgaggagactgtgtttagaggattttttatggtctctctgactaagtgggtacctacaccgcttgcagcggttattagtggtgctgtatttgctcttgcacatctcactcctggacaatttcctcagttgtttgttcttgggactgctctgggtttttcttatgctcaaacgcgaaacctcctaaccccaatcacaattcatgctttatggaactctggtgttattttgcttcttaccttccttcagctccaaggatatgatatcagggaaataatacaaggaacttgacttgggcaccataattctctggacaaagtcgtcttcatcagcttgtcgcagttgctgaacgtaggaacgaatctggttttattttctgtaatttaggccaaatgctggttggagcttgcaagtaatgtgggaagccgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="108729" stop="104989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108429" g_stop="108384" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108383" i_stop="107940" i_length="444">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107939" g_stop="107846" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="140" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107845" i_stop="107765" i_length="81">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107764" g_stop="107682" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="223" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107681" i_stop="107553" i_length="129">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107552" g_stop="107419" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="357" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107418" i_stop="107276" i_length="143">
            <donor d_prob="0.720" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107275" g_stop="107226" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="407" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107225" i_stop="107078" i_length="148">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107077" g_stop="106985" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="500" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="106984" i_stop="106170" i_length="815">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="106169" g_stop="106078" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="592" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="106077" i_stop="105689" i_length="389">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="105688" g_stop="105582" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="699" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="105581" i_stop="105472" i_length="110">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="105471" g_stop="105289" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="882" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E702933" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108429" e_stop="108384"/>
          <exon e_start="107939" e_stop="107846"/>
          <exon e_start="107764" e_stop="107682"/>
          <exon e_start="107552" e_stop="107419"/>
          <exon e_start="107275" e_stop="107226"/>
          <exon e_start="107077" e_stop="106985"/>
          <exon e_start="106169" e_stop="106078"/>
          <exon e_start="105688" e_stop="105582"/>
          <exon e_start="105471" e_stop="105289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAGGTGTAATTTTGTTACCTGGCTAAGGTTTTAAACATGTTGCTCGGACTCTTCAAAAATGTTTGATTAGTGCATGTTGGATCCTTCAAAAGTAGTGCATTTTTTTTTGAAGGATCCGACATGTGTGTGGCATCATTTTTGGAGAGTTTGAGCAACATAGGTTTGAATGTCTGAGTAATGAAGTATTATCTTATTGTGAAATGTAAAAAGATTGAACCTTTTTTATAATGGGATGTATTATTGCAACTGAGCATGACAGAAGATTTATGAACTGTAACATTTTATTTGATAATGGTAGTTTTATTCCTTTTGTTGGTGTAAAATATCTTTGTAAGTTGAAATTTATGTTTTGTCTTTGAACTTGGAAGCATAATGGGGTAACTAGTAACCAGTATTGGTCTTGGTAGGAAAAAGCTAACTAATATTCAGGCAGTTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGCGTATGGACAGTCATTTTAGCATTGTTTCCATATTGTGTCGAATCTTGATGATTCTGATGTTTCGTGTATTTCTTTTTTCAGTATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATGGTAATTAGCATTTCCACGTTATGGGATGATTCATTCATCTGTTGCTTTGTTTGGTGAGAAAACTGGATTGCAGTTTCCTCTACTCTAAAAGATTACAGTGTGGTTGATTATGATCTGTTAGTATTCCAGATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTAGCAATGTCTGCTTTCAATGGTGAGCCGCCACAAAGAGAGGTTAGAGTTGAACTTAACAGTTTATCCAATCTCTCGGATTAAGAATTTCATTCTTTGTATAACCTTTGAAGCAAATTAAATTTCATTTTTCTCTCCTGTGATGTTTTCTTTTTCCCTCGTGAATTCCTTAAAACTTATTACAGACTGATGCGCTTGCTCGGTTACTCCCATTGATAGGCTCCTCAAGTATCAGGTATTTTCGAAGGAAGTTTGAAGTTCATCTGTAAATTATCTCTGTCATCAATAGGTTAATTGCTTTTGTGTTGACGGCTTTCCAGCCACTTATTGAGTACTTATGCATGATATACAATTGAGTAACCACCTTTCTTTTTTTTATGTAGCACTGCTTCTCTGCTGGGCATTACCGGTGTACTTGCTCCAATTCTCGAGGAGACTGTGTTTAGAGGATTTTTTATGGTCTCTCTGACTAAGTGGTATAATTCTTTCTTTATAAATTTGATTTTAGATATACTACTGCTTCCCATTTGTTAGAACTGGCTCTATGTGTCTGAGTCTCCCGGACTTTGTTGAAGAACTTCAAAAAGAAGGGACAAAAAGTTTTGAATTGCTCAAGATTTGATAACGTTGTTACTCCACTGGATCATTATCTCTTGTGAGCATAAAAACACAATAAACATGTAAACATTCTTTTTTCACTAGTTGATCTACTATCTTACTTTTATATTCCCTCATTGTCTAGAAGCTCCTGTCATGAAAGATGAATACGAATTAGTAGGGCTGCCCCTAATAACTCTTTTTGAGTGGACATCTAAGATATCATCATGCCAAGCACAAAACAGGCTAGCAAAGACCAATAGCCTGACCTTTCTGTATCCTTCGACTAGAAAGCAATTGAGAGAGGTTGTCAAACCCAAAATGGAGTTGAGTCGTTAAACTCATTTTGACCTTGTTTGGATTTCATTCATGAGCTAAACAGATAAAAGCACATTTAAATGAATAAACGAGACCACATGTAAGACTTTTGGACTTTGTTAGCTCTATCATAAATAAGGCTCATTGTAATAGAGCTAACAAACTCAACTCTTCTGTACCTATTTTGCTATCATGCATCTTCTTGATGCCATTTATAAAACTACATCATAAAAAAGAATAAAAGAAAAATCAGTGGAAGAAAATTGTCTTATGACTTTATTACTTGTGGCTGATTCATATATACACATGCATGTCTATTGTCGACATGTGACTTGATGCTTCATTGTCTCTCAAGCTTTTCCATTTTTCCTTGCAGGGTACCTACACCGCTTGCAGCGGTTATTAGTGGTGCTGTATTTGCTCTTGCACATCTCACTCCTGGACAATTTCCTCAGTTGTTTGTTCTTGGTATTGCTTCCATTTTCTTAAATGTATACGACACTGAACGAAAGTAGAGGAAAAGCAGAAATTACAAAAAGGAATAACATAATTGGGTTTTACTTCTGAAAGTTCTCAAAAAGATCTATTTATGAAGGAGAAAATAGTTATAGTAAGAATTGATTTTACCTTGTAAGACATGATCAACAACTTTCTGTAGTTTTTGAGCTTTTATTCAATTTTAGAGGAATGAAATGAATTCAAACATGGTAAAAATGGATACAAAGGGTTCATGTAGTGTACCTCTACTAGTTTGGAATTGAAGCACCGTTGAGGCAAATACTTAAATTGATTCTACCCTTTCTTATAGTGCATTTTTCTTCATGTTTAATCTGAGCTGAAAAATGACATGCTTTCAGGGACTGCTCTGGGTTTTTCTTATGCTCAAACGCGAAACCTCCTAACCCCAATCACAATTCATGCTTTATGGAACTCTGGTGTTATTTTGCTTCTTACCTTCCTTCAGGTAATCTGTTCCTCATTGTCATTTAAAGCATGGCAACAGTATTTGTTGCCATGTTGCTTTCTGTGAATATGCTAGTCTGATTTCTTCCTCTTGAACTCTTTTTTGTGTAGCTCCAAGGATATGATATCAGGGAAATAATACAAGGAACTTGACTTGGGCACCATAATTCTCTGGACAAAGTCGTCTTCATCAGCTTGTCGCAGTTGCTGAACGTAGGAACGAATCTGGTTTTATTTTCTGTAATTTAGGCCAAATGCTGGTTGGAGCTTGCAAGTAATGTGGGAAGCCGAAAA</genome_strand>
        <mrna_strand>GGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGC.................................................................................TATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATG.................................................................................................................................ATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTAGCAATGTCTGCTTTCAATGGTGAGCCGCCACAAAGAGAG...............................................................................................................................................ACTGATGCGCTTGCTCGGTTACTCCCATTGATAGGCTCCTCAAGTATCAG....................................................................................................................................................CACTGCTTCTCTGCTGGGCATTACCGGTGTACTTGCTCCAATTCTCGAGGAGACTGTGTTTAGAGGATTTTTTATGGTCTCTCTGACTAAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACCTACACCGCTTGCAGCGGTTATTAGTGGTGCTGTATTTGCTCTTGCACATCTCACTCCTGGACAATTTCCTCAGTTGTTTGTTCTTG.....................................................................................................................................................................................................................................................................................................................................................................................................GGACTGCTCTGGGTTTTTCTTATGCTCAAACGCGAAACCTCCTAACCCCAATCACAATTCATGCTTTATGGAACTCTGGTGTTATTTTGCTTCTTACCTTCCTTCAG..............................................................................................................CTCCAAGGATATGATATCAGGGAAATAATACAAGGAACTTGACTTGGGCACCATAATTCTCTGGACAAAGTCGTCTTCATCAGCTTGTCGCAGTTGCTGAACGTAGGAACGAATCTGGTTTTATTTTCTGTAATTTAGGCCAAATGCTGGTTGGAGCTTGCAAGTAATGTGGGAAGCCGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703501" ref_strand="+" ref_description="SGN-E703501 [FA21CG03]">
      <seq>ggaacctttcaatctccagagaggatggcttttgtgggctggaattggtctagggggagcaataggtgcaattgctttaacaggagtagcaatgtctgctttcaatggtgagccgccacaaagagagactgatgcgcttgctcggttactcccattgataggctcctcaagtatcagcactgcttctctgctgggcattaccggtgtacttgctccaattctcgaggagactgtgtttagaggattttttatggtctctctgactaagtgggtacctacaccgcttgcagcggttattagtggtgctgtatttgctcttgcacatctcactcctggacaatttcctcagttgtttgttcttggtattgcttccattttcttaaatgtatacgacactgaacgaaagtagaggaaaagcagaaattacaaaaaggaataacataattgggttttacttctgaaagttctcaaaaagatctatttatgaaggagaaaatagttatagtaagaattgattttaccttgtaagacatgatcaacaactttctgtagtttttgagcttttattcaattttagaggaatgaaatgaattcaaacatggtaaaaatggatacaaagggttcatgtagtgtacctctactagtttggaattgaagcaccgttgaggcaaatacttaaattgattctaccctttcttatagtgcatttttcttcatgtttaatctgagctgaaaaatgacatgctttcagggactgctctgggtttttcttatgctcaaacgcgaaacctcctaaccccaatcacaattcatgctttatggaactctnggtgtattttgcttcttaccttccttcagggtatctgttcctcattgtcatttaagcatggcaacagtatttgttgccatgntgctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="107845" stop="105220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107545" g_stop="107419" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107418" i_stop="107276" i_length="143">
            <donor d_prob="0.720" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107275" g_stop="107226" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="177" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107225" i_stop="107078" i_length="148">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107077" g_stop="106985" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="270" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106984" i_stop="106170" i_length="815">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106169" g_stop="105520" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="919" r_length="649" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E703501" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>920</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107545" e_stop="107419"/>
          <exon e_start="107275" e_stop="107226"/>
          <exon e_start="107077" e_stop="106985"/>
          <exon e_start="106169" e_stop="105520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTAGCAATGTCTGCTTTCAATGGTGAGCCGCCACAAAGAGAGGTTAGAGTTGAACTTAACAGTTTATCCAATCTCTCGGATTAAGAATTTCATTCTTTGTATAACCTTTGAAGCAAATTAAATTTCATTTTTCTCTCCTGTGATGTTTTCTTTTTCCCTCGTGAATTCCTTAAAACTTATTACAGACTGATGCGCTTGCTCGGTTACTCCCATTGATAGGCTCCTCAAGTATCAGGTATTTTCGAAGGAAGTTTGAAGTTCATCTGTAAATTATCTCTGTCATCAATAGGTTAATTGCTTTTGTGTTGACGGCTTTCCAGCCACTTATTGAGTACTTATGCATGATATACAATTGAGTAACCACCTTTCTTTTTTTTATGTAGCACTGCTTCTCTGCTGGGCATTACCGGTGTACTTGCTCCAATTCTCGAGGAGACTGTGTTTAGAGGATTTTTTATGGTCTCTCTGACTAAGTGGTATAATTCTTTCTTTATAAATTTGATTTTAGATATACTACTGCTTCCCATTTGTTAGAACTGGCTCTATGTGTCTGAGTCTCCCGGACTTTGTTGAAGAACTTCAAAAAGAAGGGACAAAAAGTTTTGAATTGCTCAAGATTTGATAACGTTGTTACTCCACTGGATCATTATCTCTTGTGAGCATAAAAACACAATAAACATGTAAACATTCTTTTTTCACTAGTTGATCTACTATCTTACTTTTATATTCCCTCATTGTCTAGAAGCTCCTGTCATGAAAGATGAATACGAATTAGTAGGGCTGCCCCTAATAACTCTTTTTGAGTGGACATCTAAGATATCATCATGCCAAGCACAAAACAGGCTAGCAAAGACCAATAGCCTGACCTTTCTGTATCCTTCGACTAGAAAGCAATTGAGAGAGGTTGTCAAACCCAAAATGGAGTTGAGTCGTTAAACTCATTTTGACCTTGTTTGGATTTCATTCATGAGCTAAACAGATAAAAGCACATTTAAATGAATAAACGAGACCACATGTAAGACTTTTGGACTTTGTTAGCTCTATCATAAATAAGGCTCATTGTAATAGAGCTAACAAACTCAACTCTTCTGTACCTATTTTGCTATCATGCATCTTCTTGATGCCATTTATAAAACTACATCATAAAAAAGAATAAAAGAAAAATCAGTGGAAGAAAATTGTCTTATGACTTTATTACTTGTGGCTGATTCATATATACACATGCATGTCTATTGTCGACATGTGACTTGATGCTTCATTGTCTCTCAAGCTTTTCCATTTTTCCTTGCAGGGTACCTACACCGCTTGCAGCGGTTATTAGTGGTGCTGTATTTGCTCTTGCACATCTCACTCCTGGACAATTTCCTCAGTTGTTTGTTCTTGGTATTGCTTCCATTTTCTTAAATGTATACGACACTGAACGAAAGTAGAGGAAAAGCAGAAATTACAAAAAGGAATAACATAATTGGGTTTTACTTCTGAAAGTTCTCAAAAAGATCTATTTATGAAGGAGAAAATAGTTATAGTAAGAATTGATTTTACCTTGTAAGACATGATCAACAACTTTCTGTAGTTTTTGAGCTTTTATTCAATTTTAGAGGAATGAAATGAATTCAAACATGGTAAAAATGGATACAAAGGGTTCATGTAGTGTACCTCTACTAGTTTGGAATTGAAGCACCGTTGAGGCAAATACTTAAATTGATTCTACCCTTTCTTATAGTGCATTTTTCTTCATGTTTAATCTGAGCTGAAAAATGACATGCTTTCAGGGACTGCTCTGGGTTTTTCTTATGCTCAAACGCGAAACCTCCTAACCCCAATCACAATTCATGCTTTATGGAACTCT-GGTGTTATTTTGCTTCTTACCTTCCTTCAGGTAATCTGTTCCTCATTGTCATTTAAAGCATGGCAACAGTATTTGTTGCCATGTTGCTTTCT</genome_strand>
        <mrna_strand>GGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTAGCAATGTCTGCTTTCAATGGTGAGCCGCCACAAAGAGAG...............................................................................................................................................ACTGATGCGCTTGCTCGGTTACTCCCATTGATAGGCTCCTCAAGTATCAG....................................................................................................................................................CACTGCTTCTCTGCTGGGCATTACCGGTGTACTTGCTCCAATTCTCGAGGAGACTGTGTTTAGAGGATTTTTTATGGTCTCTCTGACTAAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACCTACACCGCTTGCAGCGGTTATTAGTGGTGCTGTATTTGCTCTTGCACATCTCACTCCTGGACAATTTCCTCAGTTGTTTGTTCTTGGTATTGCTTCCATTTTCTTAAATGTATACGACACTGAACGAAAGTAGAGGAAAAGCAGAAATTACAAAAAGGAATAACATAATTGGGTTTTACTTCTGAAAGTTCTCAAAAAGATCTATTTATGAAGGAGAAAATAGTTATAGTAAGAATTGATTTTACCTTGTAAGACATGATCAACAACTTTCTGTAGTTTTTGAGCTTTTATTCAATTTTAGAGGAATGAAATGAATTCAAACATGGTAAAAATGGATACAAAGGGTTCATGTAGTGTACCTCTACTAGTTTGGAATTGAAGCACCGTTGAGGCAAATACTTAAATTGATTCTACCCTTTCTTATAGTGCATTTTTCTTCATGTTTAATCTGAGCTGAAAAATGACATGCTTTCAGGGACTGCTCTGGGTTTTTCTTATGCTCAAACGCGAAACCTCCTAACCCCAATCACAATTCATGCTTTATGGAACTCTNGGTG-TATTTTGCTTCTTACCTTCCTTCAGGGTATCTGTTCCTCATTGTCATTT-AAGCATGGCAACAGTATTTGTTGCCATGNTGCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727623" ref_strand="+" ref_description="SGN-E727623 [LA15BA04]">
      <seq>cttttaaagaatggctggcaatttatgtataactctcactcaatcttcacccttttcaccaaaactttattacatcaaaaccccttcttcagaaatcacatagaatctctattgccccatttctcaaatttcaagattcagctcctagtcaaggttctacaagagggttcactactatatgtttttctagtcccagaaatggtcctggttataaaggaggtggacctgattggccaattttgagacgctgggatgtgccatggaattggcaaactgtttcactttcttcacttgcatgtggattaagttttgttttgacaggactaatcgaggcagcgtcaataccctatgtaggacttgatgtagaagcattgagcttggacgagaaggctgaaattttgttcgctgatcaagctataacaactgcagttgtgctaatagtcctttatgctctcaccaagtcatctcaaccacttcctgatgacatatatcgttatgatctgaaggaacctttcaatctccagagaggatggcttttgtgggctggaattggtctagggggagcaataggtgcaattgctttaacaggagtagcaatgtctgctttcaatggtgagccgccacaaagagagactgatgcgcttgctcggttactcccattgataggctcctcaagtatcagcactgcttctctgctgggcattaccggtgtacttgctccaattctcgaggagactgtgtttagaggattttttatggtctctctgactaagtgggtacctacaccgcttgcagcggttattagtggtgctgtatttgctcttgcacatctcactcctgggacatttcctcagntgtttgttcttgggactgctctgggttttttctatgctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="109188" stop="105360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108888" g_stop="108672" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108671" i_stop="108476" i_length="196">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108475" g_stop="108384" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="307" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108383" i_stop="107954" i_length="430">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107953" g_stop="107846" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="415" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107845" i_stop="107765" i_length="81">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107764" g_stop="107682" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="498" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107681" i_stop="107553" i_length="129">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107552" g_stop="107419" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="632" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107418" i_stop="107276" i_length="143">
            <donor d_prob="0.720" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107275" g_stop="107226" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="682" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107225" i_stop="107078" i_length="148">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107077" g_stop="106985" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="775" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="106984" i_stop="106170" i_length="815">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="106169" g_stop="106078" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="776" r_stop="867" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="106077" i_stop="105689" i_length="389">
            <donor d_prob="0.698" d_score="0.92"/>
            <acceptor a_prob="0.956" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="105688" g_stop="105660" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="868" r_stop="896" r_length="29" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E727623" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>898</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108888" e_stop="108672"/>
          <exon e_start="108475" e_stop="108384"/>
          <exon e_start="107953" e_stop="107846"/>
          <exon e_start="107764" e_stop="107682"/>
          <exon e_start="107552" e_stop="107419"/>
          <exon e_start="107275" e_stop="107226"/>
          <exon e_start="107077" e_stop="106985"/>
          <exon e_start="106169" e_stop="106078"/>
          <exon e_start="105688" e_stop="105660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAAAGAATGGCTGGCAATTTATGTATAACTCTCACTCAATCTTCACCCTTTTCACCAAAACTTTATTATTCATCAAAACCCCTTCTTCAGAAATCACATAGAATCTCTATTGCCCCATTTCTCAAATTTCAAGATTCAGCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAAGTAAGTATAGTAAACTTCAAATTGTGATTAAGGGTATATCTTTTTTTATGCTATGTATATATTAGGTGGAAGTAATTGTGCTATGTTTATGGAATCTTGAAATTGAAAATGATAAATTTGAATGCTTTTGGAATGAGCTTCTTAGATTGGTTTTTCTCTGTGAGTAATTTTTTTTTTGTGTTTTTTTTTTCTACAGGGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAGGTGTAATTTTGTTACCTGGCTAAGGTTTTAAACATGTTGCTCGGACTCTTCAAAAATGTTTGATTAGTGCATGTTGGATCCTTCAAAAGTAGTGCATTTTTTTTTGAAGGATCCGACATGTGTGTGGCATCATTTTTGGAGAGTTTGAGCAACATAGGTTTGAATGTCTGAGTAATGAAGTATTATCTTATTGTGAAATGTAAAAAGATTGAACCTTTTTTATAATGGGATGTATTATTGCAACTGAGCATGACAGAAGATTTATGAACTGTAACATTTTATTTGATAATGGTAGTTTTATTCCTTTTGTTGGTGTAAAATATCTTTGTAAGTTGAAATTTATGTTTTGTCTTTGAACTTGGAAGCATAATGGGGTAACTAGTAACCAGTATTGGTCTTGGTAGGAAAAAGCTAACTAATATTCAGGCAGTTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGCGTATGGACAGTCATTTTAGCATTGTTTCCATATTGTGTCGAATCTTGATGATTCTGATGTTTCGTGTATTTCTTTTTTCAGTATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATGGTAATTAGCATTTCCACGTTATGGGATGATTCATTCATCTGTTGCTTTGTTTGGTGAGAAAACTGGATTGCAGTTTCCTCTACTCTAAAAGATTACAGTGTGGTTGATTATGATCTGTTAGTATTCCAGATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTAGCAATGTCTGCTTTCAATGGTGAGCCGCCACAAAGAGAGGTTAGAGTTGAACTTAACAGTTTATCCAATCTCTCGGATTAAGAATTTCATTCTTTGTATAACCTTTGAAGCAAATTAAATTTCATTTTTCTCTCCTGTGATGTTTTCTTTTTCCCTCGTGAATTCCTTAAAACTTATTACAGACTGATGCGCTTGCTCGGTTACTCCCATTGATAGGCTCCTCAAGTATCAGGTATTTTCGAAGGAAGTTTGAAGTTCATCTGTAAATTATCTCTGTCATCAATAGGTTAATTGCTTTTGTGTTGACGGCTTTCCAGCCACTTATTGAGTACTTATGCATGATATACAATTGAGTAACCACCTTTCTTTTTTTTATGTAGCACTGCTTCTCTGCTGGGCATTACCGGTGTACTTGCTCCAATTCTCGAGGAGACTGTGTTTAGAGGATTTTTTATGGTCTCTCTGACTAAGTGGTATAATTCTTTCTTTATAAATTTGATTTTAGATATACTACTGCTTCCCATTTGTTAGAACTGGCTCTATGTGTCTGAGTCTCCCGGACTTTGTTGAAGAACTTCAAAAAGAAGGGACAAAAAGTTTTGAATTGCTCAAGATTTGATAACGTTGTTACTCCACTGGATCATTATCTCTTGTGAGCATAAAAACACAATAAACATGTAAACATTCTTTTTTCACTAGTTGATCTACTATCTTACTTTTATATTCCCTCATTGTCTAGAAGCTCCTGTCATGAAAGATGAATACGAATTAGTAGGGCTGCCCCTAATAACTCTTTTTGAGTGGACATCTAAGATATCATCATGCCAAGCACAAAACAGGCTAGCAAAGACCAATAGCCTGACCTTTCTGTATCCTTCGACTAGAAAGCAATTGAGAGAGGTTGTCAAACCCAAAATGGAGTTGAGTCGTTAAACTCATTTTGACCTTGTTTGGATTTCATTCATGAGCTAAACAGATAAAAGCACATTTAAATGAATAAACGAGACCACATGTAAGACTTTTGGACTTTGTTAGCTCTATCATAAATAAGGCTCATTGTAATAGAGCTAACAAACTCAACTCTTCTGTACCTATTTTGCTATCATGCATCTTCTTGATGCCATTTATAAAACTACATCATAAAAAAGAATAAAAGAAAAATCAGTGGAAGAAAATTGTCTTATGACTTTATTACTTGTGGCTGATTCATATATACACATGCATGTCTATTGTCGACATGTGACTTGATGCTTCATTGTCTCTCAAGCTTTTCCATTTTTCCTTGCAGGGTACCTACACCGCTTGCAGCGGTTATTAGTGGTGCTGTATTTGCTCTTGCACATCTCACTCCTGGACAATTTCCTCAGTTGTTTGTTCTTGGTATTGCTTCCATTTTCTTAAATGTATACGACACTGAACGAAAGTAGAGGAAAAGCAGAAATTACAAAAAGGAATAACATAATTGGGTTTTACTTCTGAAAGTTCTCAAAAAGATCTATTTATGAAGGAGAAAATAGTTATAGTAAGAATTGATTTTACCTTGTAAGACATGATCAACAACTTTCTGTAGTTTTTGAGCTTTTATTCAATTTTAGAGGAATGAAATGAATTCAAACATGGTAAAAATGGATACAAAGGGTTCATGTAGTGTACCTCTACTAGTTTGGAATTGAAGCACCGTTGAGGCAAATACTTAAATTGATTCTACCCTTTCTTATAGTGCATTTTTCTTCATGTTTAATCTGAGCTGAAAAATGACATGCTTTCAGGGACTGCTCTGGGTTTTTCTTATGCTCAA</genome_strand>
        <mrna_strand>CTTTTAAAGAATGGCTGGCAATTTATGTATAACTCTCACTCAATCTTCACCCTTTTCACCAAAACTTTATTA--CATCAAAACCCCTTCTTCAGAAATCACATAGAATCTCTATTGCCCCATTTCTCAAATTTCAAGATTCAGCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAA....................................................................................................................................................................................................GGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGC.................................................................................TATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATG.................................................................................................................................ATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTAGCAATGTCTGCTTTCAATGGTGAGCCGCCACAAAGAGAG...............................................................................................................................................ACTGATGCGCTTGCTCGGTTACTCCCATTGATAGGCTCCTCAAGTATCAG....................................................................................................................................................CACTGCTTCTCTGCTGGGCATTACCGGTGTACTTGCTCCAATTCTCGAGGAGACTGTGTTTAGAGGATTTTTTATGGTCTCTCTGACTAAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACCTACACCGCTTGCAGCGGTTATTAGTGGTGCTGTATTTGCTCTTGCACATCTCACTCCTGGGACATTTCCTCAGNTGTTTGTTCTTG.....................................................................................................................................................................................................................................................................................................................................................................................................GGACTGCTCTGGGTTTTTTCTATGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401558" ref_strand="+" ref_description="SGN-E401558 [PPC-4-H19]">
      <seq>ggtttcactttcttcgcttgcatgtggattaagttttgttttgacaggactaatagagacagcatcaataccatatgttggacttgatgtagaagcattgagcttggatgacaaggctgaaattttgttcgctgatcaagctataacaactgcagttgtgctaatagtcctttatactctcaccaagtcatctcaaccacttcctgatgacatatatcgttatgatctgaaggaacctttcaatctccagagaggatggcttttgtgggctggaattggtctagcgggagcaataggtgcaattgctttaacaggagtggcaatgtctgcttttaatggtgagccgccacaaagagagactgatgcgcttgctcggttactcccattgataggttcctcaagtatcagcactgcttctctgctaggcattactggtgtacttgctccaattcttgaggagaccgtgtttagaggattttttatggtctctctgactaagtgggtacctacaccgcttgcagcggttattagtggtgctgtatttgctcttgcacatcctcactcctggacaatttcctcagttgtttgttcttgggactgctctgggattttcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="108715" stop="105770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108416" g_stop="108388" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108387" i_stop="107958" i_length="430">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.564" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107957" g_stop="107846" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="141" r_length="112" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107845" i_stop="107765" i_length="81">
            <donor d_prob="0.513" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107764" g_stop="107682" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="224" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107681" i_stop="107553" i_length="129">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107552" g_stop="107419" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="358" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107418" i_stop="107276" i_length="143">
            <donor d_prob="0.720" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107275" g_stop="107226" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="408" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107225" i_stop="107078" i_length="148">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107077" g_stop="106985" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="501" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="106984" i_stop="106170" i_length="815">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="106169" g_stop="106078" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="594" r_length="93" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E401558" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108416" e_stop="108388"/>
          <exon e_start="107957" e_stop="107846"/>
          <exon e_start="107764" e_stop="107682"/>
          <exon e_start="107552" e_stop="107419"/>
          <exon e_start="107275" e_stop="107226"/>
          <exon e_start="107077" e_stop="106985"/>
          <exon e_start="106169" e_stop="106078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCACTTTCTTCACTTGCATGTGGATTAAGGTGTAATTTTGTTACCTGGCTAAGGTTTTAAACATGTTGCTCGGACTCTTCAAAAATGTTTGATTAGTGCATGTTGGATCCTTCAAAAGTAGTGCATTTTTTTTTGAAGGATCCGACATGTGTGTGGCATCATTTTTGGAGAGTTTGAGCAACATAGGTTTGAATGTCTGAGTAATGAAGTATTATCTTATTGTGAAATGTAAAAAGATTGAACCTTTTTTATAATGGGATGTATTATTGCAACTGAGCATGACAGAAGATTTATGAACTGTAACATTTTATTTGATAATGGTAGTTTTATTCCTTTTGTTGGTGTAAAATATCTTTGTAAGTTGAAATTTATGTTTTGTCTTTGAACTTGGAAGCATAATGGGGTAACTAGTAACCAGTATTGGTCTTGGTAGGAAAAAGCTAACTAATATTCAGGCAGTTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGCGTATGGACAGTCATTTTAGCATTGTTTCCATATTGTGTCGAATCTTGATGATTCTGATGTTTCGTGTATTTCTTTTTTCAGTATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATGGTAATTAGCATTTCCACGTTATGGGATGATTCATTCATCTGTTGCTTTGTTTGGTGAGAAAACTGGATTGCAGTTTCCTCTACTCTAAAAGATTACAGTGTGGTTGATTATGATCTGTTAGTATTCCAGATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTAGCAATGTCTGCTTTCAATGGTGAGCCGCCACAAAGAGAGGTTAGAGTTGAACTTAACAGTTTATCCAATCTCTCGGATTAAGAATTTCATTCTTTGTATAACCTTTGAAGCAAATTAAATTTCATTTTTCTCTCCTGTGATGTTTTCTTTTTCCCTCGTGAATTCCTTAAAACTTATTACAGACTGATGCGCTTGCTCGGTTACTCCCATTGATAGGCTCCTCAAGTATCAGGTATTTTCGAAGGAAGTTTGAAGTTCATCTGTAAATTATCTCTGTCATCAATAGGTTAATTGCTTTTGTGTTGACGGCTTTCCAGCCACTTATTGAGTACTTATGCATGATATACAATTGAGTAACCACCTTTCTTTTTTTTATGTAGCACTGCTTCTCTGCTGGGCATTACCGGTGTACTTGCTCCAATTCTCGAGGAGACTGTGTTTAGAGGATTTTTTATGGTCTCTCTGACTAAGTGGTATAATTCTTTCTTTATAAATTTGATTTTAGATATACTACTGCTTCCCATTTGTTAGAACTGGCTCTATGTGTCTGAGTCTCCCGGACTTTGTTGAAGAACTTCAAAAAGAAGGGACAAAAAGTTTTGAATTGCTCAAGATTTGATAACGTTGTTACTCCACTGGATCATTATCTCTTGTGAGCATAAAAACACAATAAACATGTAAACATTCTTTTTTCACTAGTTGATCTACTATCTTACTTTTATATTCCCTCATTGTCTAGAAGCTCCTGTCATGAAAGATGAATACGAATTAGTAGGGCTGCCCCTAATAACTCTTTTTGAGTGGACATCTAAGATATCATCATGCCAAGCACAAAACAGGCTAGCAAAGACCAATAGCCTGACCTTTCTGTATCCTTCGACTAGAAAGCAATTGAGAGAGGTTGTCAAACCCAAAATGGAGTTGAGTCGTTAAACTCATTTTGACCTTGTTTGGATTTCATTCATGAGCTAAACAGATAAAAGCACATTTAAATGAATAAACGAGACCACATGTAAGACTTTTGGACTTTGTTAGCTCTATCATAAATAAGGCTCATTGTAATAGAGCTAACAAACTCAACTCTTCTGTACCTATTTTGCTATCATGCATCTTCTTGATGCCATTTATAAAACTACATCATAAAAAAGAATAAAAGAAAAATCAGTGGAAGAAAATTGTCTTATGACTTTATTACTTGTGGCTGATTCATATATACACATGCATGTCTATTGTCGACATGTGACTTGATGCTTCATTGTCTCTCAAGCTTTTCCATTTTTCCTTGCAGGGTACCTACACCGCTTGCAGCGGTTATTAGTGGTGCTGTATTTGCTCTTGCACAT-CTCACTCCTGGACAATTTCCTCAGTTGTTTGTTCTTG</genome_strand>
        <mrna_strand>GGTTTCACTTTCTTCGCTTGCATGTGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTTTTGTTTTGACAGGACTAATAGAGACAGCATCAATACCATATGTTGGACTTGATGTAGAAGCATTGAGCTTGGATGACAAGGCTGAAATTTTGTTCGCTGATCAAGC.................................................................................TATAACAACTGCAGTTGTGCTAATAGTCCTTTATACTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATG.................................................................................................................................ATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGCGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTGGCAATGTCTGCTTTTAATGGTGAGCCGCCACAAAGAGAG...............................................................................................................................................ACTGATGCGCTTGCTCGGTTACTCCCATTGATAGGTTCCTCAAGTATCAG....................................................................................................................................................CACTGCTTCTCTGCTAGGCATTACTGGTGTACTTGCTCCAATTCTTGAGGAGACCGTGTTTAGAGGATTTTTTATGGTCTCTCTGACTAAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACCTACACCGCTTGCAGCGGTTATTAGTGGTGCTGTATTTGCTCTTGCACATCCTCACTCCTGGACAATTTCCTCAGTTGTTTGTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730494" ref_strand="+" ref_description="SGN-E730494 [LA24BC04]">
      <seq>ttttaaagaatggccggtaatgtatgtataactctcactcaatcttcacccttttcaccaaaactttattattcatcaaaaccccttcttcagaaatcacatagaatctctattgccccatttctcaaatttcaagattcagctcctagtcaaggttctacaagagggttcactactatatgtttttctagtcccagaaatggtcctggttataaaggaggtggacctgattggccaattttgagacgctgggatgtgccatggaattggcaaactgtttcactttcttcacttgcatgtggattaagttttgttttgacaggactaatcgaggcagcgtcaataccctatgtaggacttgatgtagaagcattgagcttggacgagaaggctgaaattttgttcgctgatcaagctataacaactgcagttgtgctaatagtcctttatgctctcaccaagtcatctcaaccacttcctgatgacatatatcgttatgatctgaaggaacctttcaatctccagagaggatggcttttgtgggctggaattggtctagggggagcaataggtgcaattgctttaacaggagtagcaatgtctgctttcaatggtgagccgccacaaagagagactgatgcgcttgctcggttactcccattgataggctcctcaagtatcagcactgcttctctgctgggcattaccggtgtacttgctccaattctcgaggagactgtgtttagaggattttttatggtctctctgactaagtgggtacctacaccgcttgcagcggttattagtggtgctgtatttgctcttgcacatctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="109187" stop="105810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108887" g_stop="108672" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108671" i_stop="108476" i_length="196">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108475" g_stop="108384" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="308" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108383" i_stop="107954" i_length="430">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107953" g_stop="107846" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="416" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107845" i_stop="107765" i_length="81">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107764" g_stop="107682" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="499" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107681" i_stop="107553" i_length="129">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107552" g_stop="107419" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="633" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107418" i_stop="107276" i_length="143">
            <donor d_prob="0.720" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107275" g_stop="107226" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="683" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107225" i_stop="107078" i_length="148">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107077" g_stop="106985" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="776" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="106984" i_stop="106170" i_length="815">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="106169" g_stop="106110" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="836" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E730494" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108887" e_stop="108672"/>
          <exon e_start="108475" e_stop="108384"/>
          <exon e_start="107953" e_stop="107846"/>
          <exon e_start="107764" e_stop="107682"/>
          <exon e_start="107552" e_stop="107419"/>
          <exon e_start="107275" e_stop="107226"/>
          <exon e_start="107077" e_stop="106985"/>
          <exon e_start="106169" e_stop="106110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAAGAATGGCTGGCAATTTATGTATAACTCTCACTCAATCTTCACCCTTTTCACCAAAACTTTATTATTCATCAAAACCCCTTCTTCAGAAATCACATAGAATCTCTATTGCCCCATTTCTCAAATTTCAAGATTCAGCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAAGTAAGTATAGTAAACTTCAAATTGTGATTAAGGGTATATCTTTTTTTATGCTATGTATATATTAGGTGGAAGTAATTGTGCTATGTTTATGGAATCTTGAAATTGAAAATGATAAATTTGAATGCTTTTGGAATGAGCTTCTTAGATTGGTTTTTCTCTGTGAGTAATTTTTTTTTTGTGTTTTTTTTTTCTACAGGGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAGGTGTAATTTTGTTACCTGGCTAAGGTTTTAAACATGTTGCTCGGACTCTTCAAAAATGTTTGATTAGTGCATGTTGGATCCTTCAAAAGTAGTGCATTTTTTTTTGAAGGATCCGACATGTGTGTGGCATCATTTTTGGAGAGTTTGAGCAACATAGGTTTGAATGTCTGAGTAATGAAGTATTATCTTATTGTGAAATGTAAAAAGATTGAACCTTTTTTATAATGGGATGTATTATTGCAACTGAGCATGACAGAAGATTTATGAACTGTAACATTTTATTTGATAATGGTAGTTTTATTCCTTTTGTTGGTGTAAAATATCTTTGTAAGTTGAAATTTATGTTTTGTCTTTGAACTTGGAAGCATAATGGGGTAACTAGTAACCAGTATTGGTCTTGGTAGGAAAAAGCTAACTAATATTCAGGCAGTTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGCGTATGGACAGTCATTTTAGCATTGTTTCCATATTGTGTCGAATCTTGATGATTCTGATGTTTCGTGTATTTCTTTTTTCAGTATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATGGTAATTAGCATTTCCACGTTATGGGATGATTCATTCATCTGTTGCTTTGTTTGGTGAGAAAACTGGATTGCAGTTTCCTCTACTCTAAAAGATTACAGTGTGGTTGATTATGATCTGTTAGTATTCCAGATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTAGCAATGTCTGCTTTCAATGGTGAGCCGCCACAAAGAGAGGTTAGAGTTGAACTTAACAGTTTATCCAATCTCTCGGATTAAGAATTTCATTCTTTGTATAACCTTTGAAGCAAATTAAATTTCATTTTTCTCTCCTGTGATGTTTTCTTTTTCCCTCGTGAATTCCTTAAAACTTATTACAGACTGATGCGCTTGCTCGGTTACTCCCATTGATAGGCTCCTCAAGTATCAGGTATTTTCGAAGGAAGTTTGAAGTTCATCTGTAAATTATCTCTGTCATCAATAGGTTAATTGCTTTTGTGTTGACGGCTTTCCAGCCACTTATTGAGTACTTATGCATGATATACAATTGAGTAACCACCTTTCTTTTTTTTATGTAGCACTGCTTCTCTGCTGGGCATTACCGGTGTACTTGCTCCAATTCTCGAGGAGACTGTGTTTAGAGGATTTTTTATGGTCTCTCTGACTAAGTGGTATAATTCTTTCTTTATAAATTTGATTTTAGATATACTACTGCTTCCCATTTGTTAGAACTGGCTCTATGTGTCTGAGTCTCCCGGACTTTGTTGAAGAACTTCAAAAAGAAGGGACAAAAAGTTTTGAATTGCTCAAGATTTGATAACGTTGTTACTCCACTGGATCATTATCTCTTGTGAGCATAAAAACACAATAAACATGTAAACATTCTTTTTTCACTAGTTGATCTACTATCTTACTTTTATATTCCCTCATTGTCTAGAAGCTCCTGTCATGAAAGATGAATACGAATTAGTAGGGCTGCCCCTAATAACTCTTTTTGAGTGGACATCTAAGATATCATCATGCCAAGCACAAAACAGGCTAGCAAAGACCAATAGCCTGACCTTTCTGTATCCTTCGACTAGAAAGCAATTGAGAGAGGTTGTCAAACCCAAAATGGAGTTGAGTCGTTAAACTCATTTTGACCTTGTTTGGATTTCATTCATGAGCTAAACAGATAAAAGCACATTTAAATGAATAAACGAGACCACATGTAAGACTTTTGGACTTTGTTAGCTCTATCATAAATAAGGCTCATTGTAATAGAGCTAACAAACTCAACTCTTCTGTACCTATTTTGCTATCATGCATCTTCTTGATGCCATTTATAAAACTACATCATAAAAAAGAATAAAAGAAAAATCAGTGGAAGAAAATTGTCTTATGACTTTATTACTTGTGGCTGATTCATATATACACATGCATGTCTATTGTCGACATGTGACTTGATGCTTCATTGTCTCTCAAGCTTTTCCATTTTTCCTTGCAGGGTACCTACACCGCTTGCAGCGGTTATTAGTGGTGCTGTATTTGCTCTTGCACATCTCAC</genome_strand>
        <mrna_strand>TTTTAAAGAATGGCCGGTAATGTATGTATAACTCTCACTCAATCTTCACCCTTTTCACCAAAACTTTATTATTCATCAAAACCCCTTCTTCAGAAATCACATAGAATCTCTATTGCCCCATTTCTCAAATTTCAAGATTCAGCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAA....................................................................................................................................................................................................GGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGC.................................................................................TATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATG.................................................................................................................................ATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTAGCAATGTCTGCTTTCAATGGTGAGCCGCCACAAAGAGAG...............................................................................................................................................ACTGATGCGCTTGCTCGGTTACTCCCATTGATAGGCTCCTCAAGTATCAG....................................................................................................................................................CACTGCTTCTCTGCTGGGCATTACCGGTGTACTTGCTCCAATTCTCGAGGAGACTGTGTTTAGAGGATTTTTTATGGTCTCTCTGACTAAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACCTACACCGCTTGCAGCGGTTATTAGTGGTGCTGTATTTGCTCTTGCACATCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473723" ref_strand="+" ref_description="SGN-E473723 [cSTB-33-B23]">
      <seq>attgagcttggatgataaggctgaaattttgttcgctgatcaagcgtatggacagtcattttagcatcattttcgcattgtgtccaatctccacgattccgatgttctgtgtacttatttttttttttcagtataacaactgcagttgtgctaatagtcctttatactctcaccaagtcatctcaaccacttactgatgacatatatcgttatgatctgaaggaacctttcaatctccagacaggatggcttttgtgggctggaattggtctagcgggagcaataggtgcaattgctttaacaggagtggcaatgtctgctttcaatggtgagccgccacaaagagagactgatgcgcttgctcggctactcccattgataggttcctcaagtatcagcactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="108190" stop="106926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107890" g_stop="107682" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107681" i_stop="107553" i_length="129">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107552" g_stop="107419" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="348" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107418" i_stop="107276" i_length="143">
            <donor d_prob="0.720" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107275" g_stop="107226" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="398" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107225" i_stop="107078" i_length="148">
            <donor d_prob="0.923" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107077" g_stop="107072" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="404" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E473723" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107890" e_stop="107682"/>
          <exon e_start="107552" e_stop="107419"/>
          <exon e_start="107275" e_stop="107226"/>
          <exon e_start="107077" e_stop="107072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGCGTATGGACAGTCATTTTAGCATTGTTTCCATATTGTGTCGAATCTTGATGATTCTGATGTT-T-CGT-GT-ATTTCT-TTTTTCAGTATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATGGTAATTAGCATTTCCACGTTATGGGATGATTCATTCATCTGTTGCTTTGTTTGGTGAGAAAACTGGATTGCAGTTTCCTCTACTCTAAAAGATTACAGTGTGGTTGATTATGATCTGTTAGTATTCCAGATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTAGCAATGTCTGCTTTCAATGGTGAGCCGCCACAAAGAGAGGTTAGAGTTGAACTTAACAGTTTATCCAATCTCTCGGATTAAGAATTTCATTCTTTGTATAACCTTTGAAGCAAATTAAATTTCATTTTTCTCTCCTGTGATGTTTTCTTTTTCCCTCGTGAATTCCTTAAAACTTATTACAGACTGATGCGCTTGCTCGGTTACTCCCATTGATAGGCTCCTCAAGTATCAGGTATTTTCGAAGGAAGTTTGAAGTTCATCTGTAAATTATCTCTGTCATCAATAGGTTAATTGCTTTTGTGTTGACGGCTTTCCAGCCACTTATTGAGTACTTATGCATGATATACAATTGAGTAACCACCTTTCTTTTTTTTATGTAGCACTGC</genome_strand>
        <mrna_strand>ATTGAGCTTGGATGATAAGGCTGAAATTTTGTTCGCTGATCAAGCGTATGGACAGTCATTTTAGCATCATTTTCGCATTGTGTCCAATCTCCACGATTCCGATGTTCTGTGTACTTATTTTTTTTTTTCAGTATAACAACTGCAGTTGTGCTAATAGTCCTTTATACTCTCACCAAGTCATCTCAACCACTTACTGATGACATATATCGTTATG.................................................................................................................................ATCTGAAGGAACCTTTCAATCTCCAGACAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGCGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTGGCAATGTCTGCTTTCAATGGTGAGCCGCCACAAAGAGAG...............................................................................................................................................ACTGATGCGCTTGCTCGGCTACTCCCATTGATAGGTTCCTCAAGTATCAG....................................................................................................................................................CACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451594" ref_strand="+" ref_description="SGN-E451594 [cSTS-13-N7]">
      <seq>gtggacctgattggccaattttgagaacgctgggatgtgccatggaattggcaaactgtttcactttcttcgcttgcatgtggattaaggcagttttgttttgacaggactaatagagacagcatcaataccatatgtaggacttgatgtagaagcattgagcttggatgagaaggctgaaattttgttcgctgatcaagctataacaactgcagttgtgctaatagtcctttatactctcaccaagtcatctcaaccacttcctgatgacatatatcgttatgatctgaaggaacctttcaatctccagagaggatggcttttgtgggctggaattggtctagcgggagcaataggtgcaattgctttaacaggagtggcaatgtctgctttcaatggtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="108771" stop="107134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108471" g_stop="108384" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108383" i_stop="107958" i_length="426">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.564" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107957" g_stop="107846" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="201" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107845" i_stop="107765" i_length="81">
            <donor d_prob="0.513" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107764" g_stop="107682" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="284" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107681" i_stop="107553" i_length="129">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107552" g_stop="107434" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="403" r_length="119" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E451594" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108471" e_stop="108384"/>
          <exon e_start="107957" e_stop="107846"/>
          <exon e_start="107764" e_stop="107682"/>
          <exon e_start="107552" e_stop="107434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGACCTGATTGGCCAATTTTGAG-ACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAGGTGTAATTTTGTTACCTGGCTAAGGTTTTAAACATGTTGCTCGGACTCTTCAAAAATGTTTGATTAGTGCATGTTGGATCCTTCAAAAGTAGTGCATTTTTTTTTGAAGGATCCGACATGTGTGTGGCATCATTTTTGGAGAGTTTGAGCAACATAGGTTTGAATGTCTGAGTAATGAAGTATTATCTTATTGTGAAATGTAAAAAGATTGAACCTTTTTTATAATGGGATGTATTATTGCAACTGAGCATGACAGAAGATTTATGAACTGTAACATTTTATTTGATAATGGTAGTTTTATTCCTTTTGTTGGTGTAAAATATCTTTGTAAGTTGAAATTTATGTTTTGTCTTTGAACTTGGAAGCATAATGGGGTAACTAGTAACCAGTATTGGTCTTGGTAGGAAAAAGCTAACTAATATTCAGGCAGTTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGCGTATGGACAGTCATTTTAGCATTGTTTCCATATTGTGTCGAATCTTGATGATTCTGATGTTTCGTGTATTTCTTTTTTCAGTATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATGGTAATTAGCATTTCCACGTTATGGGATGATTCATTCATCTGTTGCTTTGTTTGGTGAGAAAACTGGATTGCAGTTTCCTCTACTCTAAAAGATTACAGTGTGGTTGATTATGATCTGTTAGTATTCCAGATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTAGCAATGTCTGCTTTCAATGGTGAG</genome_strand>
        <mrna_strand>GTGGACCTGATTGGCCAATTTTGAGAACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCGCTTGCATGTGGATTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTTTGTTTTGACAGGACTAATAGAGACAGCATCAATACCATATGTAGGACTTGATGTAGAAGCATTGAGCTTGGATGAGAAGGCTGAAATTTTGTTCGCTGATCAAGC.................................................................................TATAACAACTGCAGTTGTGCTAATAGTCCTTTATACTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATG.................................................................................................................................ATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGCGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTGGCAATGTCTGCTTTCAATGGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320378" ref_strand="+" ref_description="SGN-E320378 [cTOB-22-E8]">
      <seq>atttatgtataactctcactcaatcttcacccttttcaccaaaactttattattcatcaaaaccccttcttcagaaatcacatagaatctctattgccccatttctcaaatttcaagattcagctcctagtcaaggttctacaagagggttcactactatatgtttttctagtcccagaaatggtcctggttataaaggaggtggacctgattggccaattttgagacgctgggatgtgccatggaattggcaaactgtttcactttcttcacttgcatgtggattaagttttgttttgacaggactaatcgaggcagcgtcaataccctatgtaggacttgatgtagaagcattgagcttggacgagaaggctgaaattttgttcgctgatcaagctataacaactgcagttgtgctaatagtcctttatgctctcaccaagtcatctcaaccacttcctgatgacatatatcgttatgatctgaaggaacctttcaatctccagagaggatggcttttgtgggctggaattggtctagggggagcaataggtgcaattgcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="109168" stop="107167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108868" g_stop="108672" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108671" i_stop="108476" i_length="196">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108475" g_stop="108384" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="289" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108383" i_stop="107954" i_length="430">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107953" g_stop="107846" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="397" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107845" i_stop="107765" i_length="81">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107764" g_stop="107682" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="480" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107681" i_stop="107553" i_length="129">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107552" g_stop="107467" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="566" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E320378" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108868" e_stop="108672"/>
          <exon e_start="108475" e_stop="108384"/>
          <exon e_start="107953" e_stop="107846"/>
          <exon e_start="107764" e_stop="107682"/>
          <exon e_start="107552" e_stop="107467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGTATAACTCTCACTCAATCTTCACCCTTTTCACCAAAACTTTATTATTCATCAAAACCCCTTCTTCAGAAATCACATAGAATCTCTATTGCCCCATTTCTCAAATTTCAAGATTCAGCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAAGTAAGTATAGTAAACTTCAAATTGTGATTAAGGGTATATCTTTTTTTATGCTATGTATATATTAGGTGGAAGTAATTGTGCTATGTTTATGGAATCTTGAAATTGAAAATGATAAATTTGAATGCTTTTGGAATGAGCTTCTTAGATTGGTTTTTCTCTGTGAGTAATTTTTTTTTTGTGTTTTTTTTTTCTACAGGGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAGGTGTAATTTTGTTACCTGGCTAAGGTTTTAAACATGTTGCTCGGACTCTTCAAAAATGTTTGATTAGTGCATGTTGGATCCTTCAAAAGTAGTGCATTTTTTTTTGAAGGATCCGACATGTGTGTGGCATCATTTTTGGAGAGTTTGAGCAACATAGGTTTGAATGTCTGAGTAATGAAGTATTATCTTATTGTGAAATGTAAAAAGATTGAACCTTTTTTATAATGGGATGTATTATTGCAACTGAGCATGACAGAAGATTTATGAACTGTAACATTTTATTTGATAATGGTAGTTTTATTCCTTTTGTTGGTGTAAAATATCTTTGTAAGTTGAAATTTATGTTTTGTCTTTGAACTTGGAAGCATAATGGGGTAACTAGTAACCAGTATTGGTCTTGGTAGGAAAAAGCTAACTAATATTCAGGCAGTTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGCGTATGGACAGTCATTTTAGCATTGTTTCCATATTGTGTCGAATCTTGATGATTCTGATGTTTCGTGTATTTCTTTTTTCAGTATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATGGTAATTAGCATTTCCACGTTATGGGATGATTCATTCATCTGTTGCTTTGTTTGGTGAGAAAACTGGATTGCAGTTTCCTCTACTCTAAAAGATTACAGTGTGGTTGATTATGATCTGTTAGTATTCCAGATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTA</genome_strand>
        <mrna_strand>ATTTATGTATAACTCTCACTCAATCTTCACCCTTTTCACCAAAACTTTATTATTCATCAAAACCCCTTCTTCAGAAATCACATAGAATCTCTATTGCCCCATTTCTCAAATTTCAAGATTCAGCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAA....................................................................................................................................................................................................GGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGC.................................................................................TATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATG.................................................................................................................................ATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424051" ref_strand="+" ref_description="SGN-E424051 [STM-42-P14]">
      <seq>aatttatgtatgactctcactcaatcttcacccttttcaccaaaactttattcatcaaaaccccttcttgagaaatcacatagaatctctattgccccattgaccccatttctcaaatttcaagattcagctcctagtcaatgttctacaagagggttcactactatatgcttttctagtcccagaaatggttctgattataaaggaggtggacctgattggccaattttgagacgctgggatgtgccatggaattggcaaactgtttcactttcttcgcttgcatgtggattaaggcagttttgttttgacaggactaatagagacagcatcaataccatatgtaggacttgatgtagaagcattgagcttggatgagaaggctgaaattttgttcgctgatcaagctataacaactgcagttgtgctaatagtcctttatactctcaccaagtcatctcaaccacttcctgatgacatatatcgttatgatctgaaggaacctttcaatctccagagaggatggcttttgtgggctggaattggtctagcgggagcaataggtgcaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="109169" stop="107171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108869" g_stop="108672" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.864"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108671" i_stop="108476" i_length="196">
            <donor d_prob="0.918" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108475" g_stop="108384" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="296" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108383" i_stop="107958" i_length="426">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.564" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107957" g_stop="107846" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="408" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107845" i_stop="107765" i_length="81">
            <donor d_prob="0.513" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107764" g_stop="107682" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="491" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107681" i_stop="107553" i_length="129">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107552" g_stop="107471" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="573" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E424051" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108869" e_stop="108672"/>
          <exon e_start="108475" e_stop="108384"/>
          <exon e_start="107957" e_stop="107846"/>
          <exon e_start="107764" e_stop="107682"/>
          <exon e_start="107552" e_stop="107471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTATGTATAACTCTCACTCAATCTTCACCCTTTTCACCAAAACTTTATTATTCATCAAAACCCCTTCTTCAGAAATCACATAGAATCTCTATTGCCCC----A-----TTTCTCAAATTTCAAGATTCAGCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAAGTAAGTATAGTAAACTTCAAATTGTGATTAAGGGTATATCTTTTTTTATGCTATGTATATATTAGGTGGAAGTAATTGTGCTATGTTTATGGAATCTTGAAATTGAAAATGATAAATTTGAATGCTTTTGGAATGAGCTTCTTAGATTGGTTTTTCTCTGTGAGTAATTTTTTTTTTGTGTTTTTTTTTTCTACAGGGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAGGTGTAATTTTGTTACCTGGCTAAGGTTTTAAACATGTTGCTCGGACTCTTCAAAAATGTTTGATTAGTGCATGTTGGATCCTTCAAAAGTAGTGCATTTTTTTTTGAAGGATCCGACATGTGTGTGGCATCATTTTTGGAGAGTTTGAGCAACATAGGTTTGAATGTCTGAGTAATGAAGTATTATCTTATTGTGAAATGTAAAAAGATTGAACCTTTTTTATAATGGGATGTATTATTGCAACTGAGCATGACAGAAGATTTATGAACTGTAACATTTTATTTGATAATGGTAGTTTTATTCCTTTTGTTGGTGTAAAATATCTTTGTAAGTTGAAATTTATGTTTTGTCTTTGAACTTGGAAGCATAATGGGGTAACTAGTAACCAGTATTGGTCTTGGTAGGAAAAAGCTAACTAATATTCAGGCAGTTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGCGTATGGACAGTCATTTTAGCATTGTTTCCATATTGTGTCGAATCTTGATGATTCTGATGTTTCGTGTATTTCTTTTTTCAGTATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATGGTAATTAGCATTTCCACGTTATGGGATGATTCATTCATCTGTTGCTTTGTTTGGTGAGAAAACTGGATTGCAGTTTCCTCTACTCTAAAAGATTACAGTGTGGTTGATTATGATCTGTTAGTATTCCAGATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGC</genome_strand>
        <mrna_strand>AATTTATGTATGACTCTCACTCAATCTTCACCCTTTTCACCAAAAC--T-TTATTCATCAAAACCCCTTCTTGAGAAATCACATAGAATCTCTATTGCCCCATTGACCCCATTTCTCAAATTTCAAGATTCAGCTCCTAGTCAATGTTCTACAAGAGGGTTCACTACTATATGCTTTTCTAGTCCCAGAAATGGTTCTGATTATAAA....................................................................................................................................................................................................GGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCGCTTGCATGTGGATTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTTTGTTTTGACAGGACTAATAGAGACAGCATCAATACCATATGTAGGACTTGATGTAGAAGCATTGAGCTTGGATGAGAAGGCTGAAATTTTGTTCGCTGATCAAGC.................................................................................TATAACAACTGCAGTTGTGCTAATAGTCCTTTATACTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATG.................................................................................................................................ATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGCGGGAGCAATAGGTGCAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256050" ref_strand="+" ref_description="SGN-E256050 [cLEG-35-F16]">
      <seq>ttcttcagaaatcacataaaatgggtattgccccatttctcaaagtgtcaagattcacctcctagtcaaggttctacaagagggttcactactatatgtttttctagtcccagaaatggtcctggttataaaggaggtggacctgattggccaattttgagacgctgggatgtgccatggaattggcaaactgtttcactttcttcacttgcatgtggattaaggactaatcgaggcagcgtcaataccctatgtaggacttgatgtacaaccattgagcttggacgagaaggctgaaattttgttcgctgatcaagctataacaactgcagttgtgctaatagtcctttatgctctcaccaagtcatcttaaccacttcctgatgacatatatcgttatgatctgaaggaacctttcaatctccagacaagatggcttttgtgggctggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="109102" stop="107200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108802" g_stop="108672" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108671" i_stop="108476" i_length="196">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108475" g_stop="108384" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="224" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108383" i_stop="107940" i_length="444">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107939" g_stop="107846" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="318" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107845" i_stop="107765" i_length="81">
            <donor d_prob="0.513" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107764" g_stop="107682" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="401" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107681" i_stop="107553" i_length="129">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.814" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107552" g_stop="107500" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="454" r_length="53" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E256050" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108802" e_stop="108672"/>
          <exon e_start="108475" e_stop="108384"/>
          <exon e_start="107939" e_stop="107846"/>
          <exon e_start="107764" e_stop="107682"/>
          <exon e_start="107552" e_stop="107500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCAGAAATCACATAGAATCTCTATTGCCCCATTTCTCAAA-TTTCAAGATTCAGCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAAGTAAGTATAGTAAACTTCAAATTGTGATTAAGGGTATATCTTTTTTTATGCTATGTATATATTAGGTGGAAGTAATTGTGCTATGTTTATGGAATCTTGAAATTGAAAATGATAAATTTGAATGCTTTTGGAATGAGCTTCTTAGATTGGTTTTTCTCTGTGAGTAATTTTTTTTTTGTGTTTTTTTTTTCTACAGGGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAGGTGTAATTTTGTTACCTGGCTAAGGTTTTAAACATGTTGCTCGGACTCTTCAAAAATGTTTGATTAGTGCATGTTGGATCCTTCAAAAGTAGTGCATTTTTTTTTGAAGGATCCGACATGTGTGTGGCATCATTTTTGGAGAGTTTGAGCAACATAGGTTTGAATGTCTGAGTAATGAAGTATTATCTTATTGTGAAATGTAAAAAGATTGAACCTTTTTTATAATGGGATGTATTATTGCAACTGAGCATGACAGAAGATTTATGAACTGTAACATTTTATTTGATAATGGTAGTTTTATTCCTTTTGTTGGTGTAAAATATCTTTGTAAGTTGAAATTTATGTTTTGTCTTTGAACTTGGAAGCATAATGGGGTAACTAGTAACCAGTATTGGTCTTGGTAGGAAAAAGCTAACTAATATTCAGGCAGTTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGCGTATGGACAGTCATTTTAGCATTGTTTCCATATTGTGTCGAATCTTGATGATTCTGATGTTTCGTGTATTTCTTTTTTCAGTATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATGGTAATTAGCATTTCCACGTTATGGGATGATTCATTCATCTGTTGCTTTGTTTGGTGAGAAAACTGGATTGCAGTTTCCTCTACTCTAAAAGATTACAGTGTGGTTGATTATGATCTGTTAGTATTCCAGATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATT</genome_strand>
        <mrna_strand>TTCTTCAGAAATCACATAAAATGGGTATTGCCCCATTTCTCAAAGTGTCAAGATTCACCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAA....................................................................................................................................................................................................GGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTACAACCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGC.................................................................................TATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTTAACCACTTCCTGATGACATATATCGTTATG.................................................................................................................................ATCTGAAGGAACCTTTCAATCTCCAGACAAGATGGCTTTTGTGGGCTGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469133" ref_strand="+" ref_description="SGN-E469133 [cSTB-10-H3]">
      <seq>caaacaatggctggcaatttatgtataactctcactcaatcttcacccttttcaccaaaactttattcatcaaaaccccttcttcagaaatcacatagaatctctattgccccattgaccccatttctcaaatttcaagattcagctgctagtcaagcttctactagagggttcactactatatgcttttctagtcccagaaatggtcctgattataaaggaggtggacctgattggccaattttgagacgctgggatgtgccatggaattggcaaactgtttcactttcttcgcttgcatgtggattaaggactaatagagacagcatcaataccatatgttggacttgatgtagaagcattgagcttggatgacaaggctgaaattttgttcgctgatcaagcaaaactggattgcagtttcctccactctaaaagattacagcgtggttgattatgatctgttagtattccagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="109183" stop="107248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108884" g_stop="108672" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.869"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108671" i_stop="108476" i_length="196">
            <donor d_prob="0.918" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108475" g_stop="108384" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="311" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108383" i_stop="107940" i_length="444">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107939" g_stop="107846" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="405" r_length="94" r_score="0.926"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107845" i_stop="107624" i_length="222">
            <donor d_prob="0.513" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107623" g_stop="107548" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="481" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E469133" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108884" e_stop="108672"/>
          <exon e_start="108475" e_stop="108384"/>
          <exon e_start="107939" e_stop="107846"/>
          <exon e_start="107623" e_stop="107548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGAATGGCTGGCAATTTATGTATAACTCTCACTCAATCTTCACCCTTTTCACCAAAACTTTATTATTCATCAAAACCCCTTCTTCAGAAATCACATAGAATCTCTATTGCCCCA-T-------TT-CTCAAATTTCAAGATTCAGCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAAGTAAGTATAGTAAACTTCAAATTGTGATTAAGGGTATATCTTTTTTTATGCTATGTATATATTAGGTGGAAGTAATTGTGCTATGTTTATGGAATCTTGAAATTGAAAATGATAAATTTGAATGCTTTTGGAATGAGCTTCTTAGATTGGTTTTTCTCTGTGAGTAATTTTTTTTTTGTGTTTTTTTTTTCTACAGGGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAGGTGTAATTTTGTTACCTGGCTAAGGTTTTAAACATGTTGCTCGGACTCTTCAAAAATGTTTGATTAGTGCATGTTGGATCCTTCAAAAGTAGTGCATTTTTTTTTGAAGGATCCGACATGTGTGTGGCATCATTTTTGGAGAGTTTGAGCAACATAGGTTTGAATGTCTGAGTAATGAAGTATTATCTTATTGTGAAATGTAAAAAGATTGAACCTTTTTTATAATGGGATGTATTATTGCAACTGAGCATGACAGAAGATTTATGAACTGTAACATTTTATTTGATAATGGTAGTTTTATTCCTTTTGTTGGTGTAAAATATCTTTGTAAGTTGAAATTTATGTTTTGTCTTTGAACTTGGAAGCATAATGGGGTAACTAGTAACCAGTATTGGTCTTGGTAGGAAAAAGCTAACTAATATTCAGGCAGTTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGCGTATGGACAGTCATTTTAGCATTGTTTCCATATTGTGTCGAATCTTGATGATTCTGATGTTTCGTGTATTTCTTTTTTCAGTATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATGGTAATTAGCATTTCCACGTTATGGGATGATTCATTCATCTGTTGCTTTGTTTGGTGAGAAAACTGGATTGCAGTTTCCTCTACTCTAAAAGATTACAGTGTGGTTGATTATGATCTGTTAGTATTCCAGATCTG</genome_strand>
        <mrna_strand>CAAACAATGGCTGGCAATTTATGTATAACTCTCACTCAATCTTCACCCTTTTCACCAAAAC--T-TTATTCATCAAAACCCCTTCTTCAGAAATCACATAGAATCTCTATTGCCCCATTGACCCCATTTCTCAAATTTCAAGATTCAGCTGCTAGTCAAGCTTCTACTAGAGGGTTCACTACTATATGCTTTTCTAGTCCCAGAAATGGTCCTGATTATAAA....................................................................................................................................................................................................GGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCGCTTGCATGTGGATTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAATAGAGACAGCATCAATACCATATGTTGGACTTGATGTAGAAGCATTGAGCTTGGATGACAAGGCTGAAATTTTGTTCGCTGATCAAGC..............................................................................................................................................................................................................................AAAACTGGATTGCAGTTTCCTCCACTCTAAAAGATTACAGCGTGGTTGATTATGATCTGTTAGTATTCCAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358748" ref_strand="+" ref_description="SGN-E358748 [cLHT-24-K3]">
      <seq>ctcactcaatcttcaccgttttcaccaaagctttattattcatcaaaaccccttcttcagaaatcacatagaatctctattgccccatttctcaaatttcaagattcagctcctagtcaaggttctacaagagggttcactactatatgtttttctagtcccagaaatggtcctggttataaaggaggtggacctgattggccaattttgagacgctgggatgtgccatggaattggcaaactgtttcactttcttcacttgcatgtggattaagttttgttttgacaggactaatcgaggcagcgtcaataccctatgtaggacttgatgtagaagcattgagcttggacgagaaggctgaaattttgttcgctgatcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="109154" stop="107546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108854" g_stop="108672" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108671" i_stop="108476" i_length="196">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108475" g_stop="108384" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="275" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108383" i_stop="107954" i_length="430">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107953" g_stop="107846" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="383" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E358748" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108854" e_stop="108672"/>
          <exon e_start="108475" e_stop="108384"/>
          <exon e_start="107953" e_stop="107846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCAATCTTCACCCTTTTCACCAAAACTTTATTATTCATCAAAACCCCTTCTTCAGAAATCACATAGAATCTCTATTGCCCCATTTCTCAAATTTCAAGATTCAGCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAAGTAAGTATAGTAAACTTCAAATTGTGATTAAGGGTATATCTTTTTTTATGCTATGTATATATTAGGTGGAAGTAATTGTGCTATGTTTATGGAATCTTGAAATTGAAAATGATAAATTTGAATGCTTTTGGAATGAGCTTCTTAGATTGGTTTTTCTCTGTGAGTAATTTTTTTTTTGTGTTTTTTTTTTCTACAGGGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAGGTGTAATTTTGTTACCTGGCTAAGGTTTTAAACATGTTGCTCGGACTCTTCAAAAATGTTTGATTAGTGCATGTTGGATCCTTCAAAAGTAGTGCATTTTTTTTTGAAGGATCCGACATGTGTGTGGCATCATTTTTGGAGAGTTTGAGCAACATAGGTTTGAATGTCTGAGTAATGAAGTATTATCTTATTGTGAAATGTAAAAAGATTGAACCTTTTTTATAATGGGATGTATTATTGCAACTGAGCATGACAGAAGATTTATGAACTGTAACATTTTATTTGATAATGGTAGTTTTATTCCTTTTGTTGGTGTAAAATATCTTTGTAAGTTGAAATTTATGTTTTGTCTTTGAACTTGGAAGCATAATGGGGTAACTAGTAACCAGTATTGGTCTTGGTAGGAAAAAGCTAACTAATATTCAGGCAGTTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGC</genome_strand>
        <mrna_strand>CTCACTCAATCTTCACCGTTTTCACCAAAGCTTTATTATTCATCAAAACCCCTTCTTCAGAAATCACATAGAATCTCTATTGCCCCATTTCTCAAATTTCAAGATTCAGCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAA....................................................................................................................................................................................................GGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559335" ref_strand="+" ref_description="SGN-E559335 [18815]">
      <seq>aaaacaacaaacccgagttttcactttcttcaaagtaccattttttctgtctttgtatgatagatagagagaaggagacgtgtgattttgatatatttggttgaaagaatcatcaagaaacgatttttatgaattaaagtttggatttttgaagtggggtttgtgttaaattcgtttcttgattaattttttggaattttttaaggactggacccataacccatttctgtctgttgataaaggaaaagcaataaaggggaaagaagagtttttggagatcatttaaggaattgttggaatattttcatgccattgggctgcaatggcgggcaaaaactcaggggataataggactaggacttctgtatcaatatttataatagctggactatgctgcttcttctatttacttggagcatggcaaagaagtggttttgggaaaggagatagtatagcagaggccgtcaccaagactgctggcgagaattgcgatatactaccaaatctcaattttgaaactcgtcatgctggcgaagcaggcggtactgatgagtcggaagaagtcgaggaactcaagccatgtgatcctcagtacactgattatacaccatgtcaagatcaaaagcgtgctatgactttcccaagggaaaatatgaacctaccgagaaaggcattgtccacctcaagaagagaagttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="113521" stop="115777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113821" g_stop="114142" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114143" i_stop="115093" i_length="951">
            <donor d_prob="0.669" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115094" g_stop="115477" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="700" r_length="385" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E559335" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113821" e_stop="114142"/>
          <exon e_start="115094" e_stop="115477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAACCAAACCCGAGTTTTCACTTTCTTCAAAGTACTACCATTTTTTCCCGTCTTTGTATGATAGATAGAGAGAAGGAGACGTGTGATTTTGATGTATTTGGTTAAAAAAATCGTCAAGAAACGATTTTTATGAATTAAAGTTTGGATTTTTGAAGTGGGGTTTGTGTTAAATTTGTTTCTTGATTAATTTTTTTTGGAATTTTTTAAGGACTGGACCCATAACCCATTGCTGTCTGTTGATAAAGGAAAAGAAATAAAGGGGAAAGAAGAGATTTTGGAGATCATTTAAGGAATTGTTGGAATATTTTCATGCCATTGGTATGTGATTCTTGAATCATGTGTTAGCTGTGATCTGTTTATTTAATCATTGGAACTTTGTGATTTGGATTTGATTTCTTGTTTAGTTGATTCATTTGACAGGTGGGGTTTGTTTTAAAAAAGTTTGCTTGAGCTCATTTATGTTTTAAATCTGGTCCCTTTTTTTTTTTTTAATGTGATGTTGATCATTGATTAGATTAGCTGATTTAAATGAAAGTTATATCGTTGAGCATTTATTGTGGTGTGTAATTCATGGATAAAAGGTTTCTTCTTTGGTAGTGCATTGTGTTTGTTTGATGTTTTTGTTTTATTATGTTTGGAGTAAAGATATGGTTATTTAAGTGTTTGGTTAAAGCACTAGCCTGTTTAGTGTTATGTAGACCAGAATTCTTGAACTAGTAAAAGATCTGAATTTTGATCCTTAAGAAGTTTTGAATGCTTAAAAGATCCAATTGTTGTGGGATGTCCAAGAGGACTTTTGAGTGTTTGAAAGTTATGCTGGTTTCATCACTATGCTGGATCTGCAGTTATTCAACTTCTGATCATATCCCTGGCTTGAGGAATGAGAGCTTCATCTGATCTAAGTCTGCCTTTTGGTTTTAGTTGATCTCGACTAACTTTAGGAACTTAGATAACATTTGACATGAAAGGGTTGGCATGGATCCCTTACATTATGAGAGTGACGTGAGGAGGAACTTTGAAAGTTTTGTTTGAAATAATAAGCCTATGTGTAGAAAATTTAAGATCTTGAGACCTCAATAACCATTTATCACATTCTGAATTCTGATCTAGCTACAAGCTTGTATTTTTCTTACTCTAAATTATGAAAGGCCATGTTATATGCAATTAGTGATGTCTTGGTTTCCTTGCATCTTTTTATCACTTGAGGAAAATGTGCATCTGCATTTGTACTTCCTTTTCAATCCTAACGAGGCACTGAAATTATTTCAGGGCTGCAATGGCGGGCAAAAACTCAGGGGATAATAGGACTAGGACTTCTGTATCAATATTTATAATAGCTGGTCTATGCTGCTTCTTCTATTTACTTGGAGCATGGCAAAGAAGTGGTTTTGGGAAAGGAGATAGTATAGCAGTGGCTGTCACCAAGACTGCTGGTGAGAATTGCGATGTACTACCAAATCTCAATTTTGAAACTCGTCATGCTGGCGAAGCAGGTGGTACTGATGAGTCGGAAGAAGTCGAGGAACTTAAGCCATGTGATCCTCAGTACACTGATTATACACCATGTCAAGATCAAAAGCGTGCTATGACTTTCCCAAGGGAAAATATGAA-CTACCGAGAAAGGCATTGTCCACCTCAAGAAGAGAAGTTACA</genome_strand>
        <mrna_strand>AAAACAA-CAAACCCGAGTTTTCACTTTCTTCAAAG---TACCATTTTTT-CTGTCTTTGTATGATAGATAGAGAGAAGGAGACGTGTGATTTTGATATATTTGGTTGAAAGAATCATCAAGAAACGATTTTTATGAATTAAAGTTTGGATTTTTGAAGTGGGGTTTGTGTTAAATTCGTTTCTTGATTAA--TTTTTTGGAATTTTTTAAGGACTGGACCCATAACCCATTTCTGTCTGTTGATAAAGGAAAAGCAATAAAGGGGAAAGAAGAGTTTTTGGAGATCATTTAAGGAATTGTTGGAATATTTTCATGCCATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCAATGGCGGGCAAAAACTCAGGGGATAATAGGACTAGGACTTCTGTATCAATATTTATAATAGCTGGACTATGCTGCTTCTTCTATTTACTTGGAGCATGGCAAAGAAGTGGTTTTGGGAAAGGAGATAGTATAGCAGAGGCCGTCACCAAGACTGCTGGCGAGAATTGCGATATACTACCAAATCTCAATTTTGAAACTCGTCATGCTGGCGAAGCAGGCGGTACTGATGAGTCGGAAGAAGTCGAGGAACTCAAGCCATGTGATCCTCAGTACACTGATTATACACCATGTCAAGATCAAAAGCGTGCTATGACTTTCCCAAGGGAAAATATGAACCTACCGAGAAAGGCATTGTCCACCTCAAGAAGAGAAGTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446145" ref_strand="+" ref_description="SGN-E446145 [cSTA-20-I23]">
      <seq>gccgaggaacccgagttttcactttcttcaaagtaccattttttctgtctttgttgataatgagagaggagacgtgtgattttgatatatttggttgaaagaatcatcaagaaacgatttttatgaattaaagtttggatttttgaagtggggtttgtgttaaattcgtttcttgattaattttttggaattttttaaggactggacccataacccatttctgtctgttgataaaggaaaagcaataaaggggaaagaagagtttttggagatcatttaaggaattgttggaatattttcatgccattgggctgcaatggcgggcaaaaactcaggggataataggactaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="113531" stop="115438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113824" g_stop="114142" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114143" i_stop="115093" i_length="951">
            <donor d_prob="0.669" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115094" g_stop="115138" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="354" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E446145" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.028" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113824" e_stop="114142"/>
          <exon e_start="115094" e_stop="115138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACCAAACCCGAGTTTTCACTTTCTTCAAAGTACTACCATTTTTTCCCGTCTTTGTATGATAGATAGAGAGAAGGAGACGTGTGATTTTGATGTATTTGGTTAAAAAAATCGTCAAGAAACGATTTTTATGAATTAAAGTTTGGATTTTTGAAGTGGGGTTTGTGTTAAATTTGTTTCTTGATTAATTTTTTTTGGAATTTTTTAAGGACTGGACCCATAACCCATTGCTGTCTGTTGATAAAGGAAAAGAAATAAAGGGGAAAGAAGAGATTTTGGAGATCATTTAAGGAATTGTTGGAATATTTTCATGCCATTGGTATGTGATTCTTGAATCATGTGTTAGCTGTGATCTGTTTATTTAATCATTGGAACTTTGTGATTTGGATTTGATTTCTTGTTTAGTTGATTCATTTGACAGGTGGGGTTTGTTTTAAAAAAGTTTGCTTGAGCTCATTTATGTTTTAAATCTGGTCCCTTTTTTTTTTTTTAATGTGATGTTGATCATTGATTAGATTAGCTGATTTAAATGAAAGTTATATCGTTGAGCATTTATTGTGGTGTGTAATTCATGGATAAAAGGTTTCTTCTTTGGTAGTGCATTGTGTTTGTTTGATGTTTTTGTTTTATTATGTTTGGAGTAAAGATATGGTTATTTAAGTGTTTGGTTAAAGCACTAGCCTGTTTAGTGTTATGTAGACCAGAATTCTTGAACTAGTAAAAGATCTGAATTTTGATCCTTAAGAAGTTTTGAATGCTTAAAAGATCCAATTGTTGTGGGATGTCCAAGAGGACTTTTGAGTGTTTGAAAGTTATGCTGGTTTCATCACTATGCTGGATCTGCAGTTATTCAACTTCTGATCATATCCCTGGCTTGAGGAATGAGAGCTTCATCTGATCTAAGTCTGCCTTTTGGTTTTAGTTGATCTCGACTAACTTTAGGAACTTAGATAACATTTGACATGAAAGGGTTGGCATGGATCCCTTACATTATGAGAGTGACGTGAGGAGGAACTTTGAAAGTTTTGTTTGAAATAATAAGCCTATGTGTAGAAAATTTAAGATCTTGAGACCTCAATAACCATTTATCACATTCTGAATTCTGATCTAGCTACAAGCTTGTATTTTTCTTACTCTAAATTATGAAAGGCCATGTTATATGCAATTAGTGATGTCTTGGTTTCCTTGCATCTTTTTATCACTTGAGGAAAATGTGCATCTGCATTTGTACTTCCTTTTCAATCCTAACGAGGCACTGAAATTATTTCAGGGCTGCAATGGCGGGCAAAAACTCAGGGGATAATAGGACTAGGAC</genome_strand>
        <mrna_strand>GCCGAGGAACCCGAGTTTTCACTTTCTTCAAAGTAC---CATTTTTT-CTGTCTTTGT-TGATA-AT-GAGAG-AGGAGACGTGTGATTTTGATATATTTGGTTGAAAGAATCATCAAGAAACGATTTTTATGAATTAAAGTTTGGATTTTTGAAGTGGGGTTTGTGTTAAATTCGTTTCTTGATTAA--TTTTTTGGAATTTTTTAAGGACTGGACCCATAACCCATTTCTGTCTGTTGATAAAGGAAAAGCAATAAAGGGGAAAGAAGAGTTTTTGGAGATCATTTAAGGAATTGTTGGAATATTTTCATGCCATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCAATGGCGGGCAAAAACTCAGGGGATAATAGGACTAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442382" ref_strand="+" ref_description="SGN-E442382 [cSTA-33-A20]">
      <seq>ccaaacccgagtgttcactttcttcggagtaccattttttctgtctttgtatgatagatagagagaaggagacgtgtgattttgatatatttggttgaaagaatcatcaagaaacgatttttatgaattaaagtttggatttttgaagtggggtttgtgttaaattcgtttcttgattaattatttggaattctttaaggactggacccataacccatttctgtctgttgataaaggaaaagcaatccaggggaaagaagagtttttggagatcatttaaggaattgttggaatattttcatgccattgggctgcaatggcgggcaaaatctcaggggataataggactaggacttctgtatcaatattgataatagctggactatgctgcttcttctatttacttggagcatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="113556" stop="115500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113828" g_stop="114142" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114143" i_stop="115093" i_length="951">
            <donor d_prob="0.669" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115094" g_stop="115200" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="416" r_length="107" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E442382" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113828" e_stop="114142"/>
          <exon e_start="115094" e_stop="115200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAACCCGAGTTTTCACTTTCTTCAAAGTACTACCATTTTTTCCCGTCTTTGTATGATAGATAGAGAGAAGGAGACGTGTGATTTTGATGTATTTGGTTAAAAAAATCGTCAAGAAACGATTTTTATGAATTAAAGTTTGGATTTTTGAAGTGGGGTTTGTGTTAAATTTGTTTCTTGATTAATTTTTTTTGGAATTTTTTAAGGACTGGACCCATAACCCATTGCTGTCTGTTGATAAAGGAAAAGAAATAAAGGGGAAAGAAGAGATTTTGGAGATCATTTAAGGAATTGTTGGAATATTTTCATGCCATTGGTATGTGATTCTTGAATCATGTGTTAGCTGTGATCTGTTTATTTAATCATTGGAACTTTGTGATTTGGATTTGATTTCTTGTTTAGTTGATTCATTTGACAGGTGGGGTTTGTTTTAAAAAAGTTTGCTTGAGCTCATTTATGTTTTAAATCTGGTCCCTTTTTTTTTTTTTAATGTGATGTTGATCATTGATTAGATTAGCTGATTTAAATGAAAGTTATATCGTTGAGCATTTATTGTGGTGTGTAATTCATGGATAAAAGGTTTCTTCTTTGGTAGTGCATTGTGTTTGTTTGATGTTTTTGTTTTATTATGTTTGGAGTAAAGATATGGTTATTTAAGTGTTTGGTTAAAGCACTAGCCTGTTTAGTGTTATGTAGACCAGAATTCTTGAACTAGTAAAAGATCTGAATTTTGATCCTTAAGAAGTTTTGAATGCTTAAAAGATCCAATTGTTGTGGGATGTCCAAGAGGACTTTTGAGTGTTTGAAAGTTATGCTGGTTTCATCACTATGCTGGATCTGCAGTTATTCAACTTCTGATCATATCCCTGGCTTGAGGAATGAGAGCTTCATCTGATCTAAGTCTGCCTTTTGGTTTTAGTTGATCTCGACTAACTTTAGGAACTTAGATAACATTTGACATGAAAGGGTTGGCATGGATCCCTTACATTATGAGAGTGACGTGAGGAGGAACTTTGAAAGTTTTGTTTGAAATAATAAGCCTATGTGTAGAAAATTTAAGATCTTGAGACCTCAATAACCATTTATCACATTCTGAATTCTGATCTAGCTACAAGCTTGTATTTTTCTTACTCTAAATTATGAAAGGCCATGTTATATGCAATTAGTGATGTCTTGGTTTCCTTGCATCTTTTTATCACTTGAGGAAAATGTGCATCTGCATTTGTACTTCCTTTTCAATCCTAACGAGGCACTGAAATTATTTCAGGGCTGCAATGGCGGGCAAAAACTCAGGGGATAATAGGACTAGGACTTCTGTATCAATATTTATAATAGCTGGTCTATGCTGCTTCTTCTATTTACTTGGAGCATGGC</genome_strand>
        <mrna_strand>CCAAACCCGAGTGTTCACTTTCTTC---GGAGTACCATTTTTT-CTGTCTTTGTATGATAGATAGAGAGAAGGAGACGTGTGATTTTGATATATTTGGTTGAAAGAATCATCAAGAAACGATTTTTATGAATTAAAGTTTGGATTTTTGAAGTGGGGTTTGTGTTAAATTCGTTTCTTGATTAA--TTATTTGGAATTCTTTAAGGACTGGACCCATAACCCATTTCTGTCTGTTGATAAAGGAAAAGCAATCCAGGGGAAAGAAGAGTTTTTGGAGATCATTTAAGGAATTGTTGGAATATTTTCATGCCATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCAATGGCGGGCAAAATCTCAGGGGATAATAGGACTAGGACTTCTGTATCAATATTGATAATAGCTGGACTATGCTGCTTCTTCTATTTACTTGGAGCATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442375" ref_strand="+" ref_description="SGN-E442375 [cSTA-33-O19]">
      <seq>ccaaacccgagttttcactttcttcaaagtaccattttttctgtctttgtgtgatagatagagagaaggagacgtgtgattttgatatatttggctgaaagaatcatcaataaacgatttttatgaattaaagtttggatttttgaagtggggtttgtgttaaattcgtttcttgattaattttttggaattttttaaggactggacccataacccatttctgtctgttgataaaggaaaagcaataaaggggaaagaagagtttttggagatcatttaaggaattgttggaatattttcatgccattgggctgcaatggcgggcaaaaactcatgggataatacgactaggacttctgtatcaatatttataatagctggactatgctgcttcttctatttacttggagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="113528" stop="115498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113828" g_stop="114142" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114143" i_stop="115093" i_length="951">
            <donor d_prob="0.669" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115094" g_stop="115198" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="414" r_length="105" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E442375" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113828" e_stop="114142"/>
          <exon e_start="115094" e_stop="115198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAACCCGAGTTTTCACTTTCTTCAAAGTACTACCATTTTTTCCCGTCTTTGTATGATAGATAGAGAGAAGGAGACGTGTGATTTTGATGTATTTGGTTAAAAAAATCGTCAAGAAACGATTTTTATGAATTAAAGTTTGGATTTTTGAAGTGGGGTTTGTGTTAAATTTGTTTCTTGATTAATTTTTTTTGGAATTTTTTAAGGACTGGACCCATAACCCATTGCTGTCTGTTGATAAAGGAAAAGAAATAAAGGGGAAAGAAGAGATTTTGGAGATCATTTAAGGAATTGTTGGAATATTTTCATGCCATTGGTATGTGATTCTTGAATCATGTGTTAGCTGTGATCTGTTTATTTAATCATTGGAACTTTGTGATTTGGATTTGATTTCTTGTTTAGTTGATTCATTTGACAGGTGGGGTTTGTTTTAAAAAAGTTTGCTTGAGCTCATTTATGTTTTAAATCTGGTCCCTTTTTTTTTTTTTAATGTGATGTTGATCATTGATTAGATTAGCTGATTTAAATGAAAGTTATATCGTTGAGCATTTATTGTGGTGTGTAATTCATGGATAAAAGGTTTCTTCTTTGGTAGTGCATTGTGTTTGTTTGATGTTTTTGTTTTATTATGTTTGGAGTAAAGATATGGTTATTTAAGTGTTTGGTTAAAGCACTAGCCTGTTTAGTGTTATGTAGACCAGAATTCTTGAACTAGTAAAAGATCTGAATTTTGATCCTTAAGAAGTTTTGAATGCTTAAAAGATCCAATTGTTGTGGGATGTCCAAGAGGACTTTTGAGTGTTTGAAAGTTATGCTGGTTTCATCACTATGCTGGATCTGCAGTTATTCAACTTCTGATCATATCCCTGGCTTGAGGAATGAGAGCTTCATCTGATCTAAGTCTGCCTTTTGGTTTTAGTTGATCTCGACTAACTTTAGGAACTTAGATAACATTTGACATGAAAGGGTTGGCATGGATCCCTTACATTATGAGAGTGACGTGAGGAGGAACTTTGAAAGTTTTGTTTGAAATAATAAGCCTATGTGTAGAAAATTTAAGATCTTGAGACCTCAATAACCATTTATCACATTCTGAATTCTGATCTAGCTACAAGCTTGTATTTTTCTTACTCTAAATTATGAAAGGCCATGTTATATGCAATTAGTGATGTCTTGGTTTCCTTGCATCTTTTTATCACTTGAGGAAAATGTGCATCTGCATTTGTACTTCCTTTTCAATCCTAACGAGGCACTGAAATTATTTCAGGGCTGCAATGGCGGGCAAAAACTCAGGGGATAATAGGACTAGGACTTCTGTATCAATATTTATAATAGCTGGTCTATGCTGCTTCTTCTATTTACTTGGAGCATG</genome_strand>
        <mrna_strand>CCAAACCCGAGTTTTCACTTTCTTCAAAG---TACCATTTTTT-CTGTCTTTGTGTGATAGATAGAGAGAAGGAGACGTGTGATTTTGATATATTTGGCTGAAAGAATCATCAATAAACGATTTTTATGAATTAAAGTTTGGATTTTTGAAGTGGGGTTTGTGTTAAATTCGTTTCTTGATTAA--TTTTTTGGAATTTTTTAAGGACTGGACCCATAACCCATTTCTGTCTGTTGATAAAGGAAAAGCAATAAAGGGGAAAGAAGAGTTTTTGGAGATCATTTAAGGAATTGTTGGAATATTTTCATGCCATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCAATGGCGGGCAAAAACTCATGGGATAATACGACTAGGACTTCTGTATCAATATTTATAATAGCTGGACTATGCTGCTTCTTCTATTTACTTGGAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484171" ref_strand="+" ref_description="SGN-E484171 [cSTE-12-I16]">
      <seq>cgagttttcactttcttcaagtaccattttttctgtctttgtatgatagatagagagaaggagacgtgtgattttgatatatttggttgaaagaatcatcaagaaacgatttttatgaattaaagtttggatttttgaagtggggtttgtgttaaattcgtttcttgattaattttttggaatttttttaaggactggacccataacccatttctgtctgttgataaaggaaaagcaataaaggggaaagaagagtttttggagatcatttaaggaattgttggaatattttcatgccattgggctgcaatggcgggcaaaaactcaggggataataggactaggacttctgtatcaatatttataatagctggactatgctgcttcttctatttacttggagcatggcaaagaagtggttttgggaaaggagatagtatagcagaggccgtcaccaagactgctggcgagaattgcgatatactaccaaatctcaattttgaaactcgtcatgctggcgaagcaggcggtactgatgagtcggaagaagtcgaggaactcaagccatgtgatcctcagtacactgattatacaccatgtcaagatcaaaagcgtgctatgactttcccaagggaaaatatgaactaccgagaaaggcattgtccacctcaagaagagaagttacattgccttattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="113535" stop="115788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113835" g_stop="114142" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114143" i_stop="115093" i_length="951">
            <donor d_prob="0.669" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115094" g_stop="115488" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="697" r_length="395" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E484171" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113835" e_stop="114142"/>
          <exon e_start="115094" e_stop="115488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTTTTCACTTTCTTCAAAGTACTACCATTTTTTCCCGTCTTTGTATGATAGATAGAGAGAAGGAGACGTGTGATTTTGATGTATTTGGTTAAAAAAATCGTCAAGAAACGATTTTTATGAATTAAAGTTTGGATTTTTGAAGTGGGGTTTGTGTTAAATTTGTTTCTTGATTAATTTTTTTTGGAATTTTTTAAGGACTGGACCCATAACCCATTGCTGTCTGTTGATAAAGGAAAAGAAATAAAGGGGAAAGAAGAGATTTTGGAGATCATTTAAGGAATTGTTGGAATATTTTCATGCCATTGGTATGTGATTCTTGAATCATGTGTTAGCTGTGATCTGTTTATTTAATCATTGGAACTTTGTGATTTGGATTTGATTTCTTGTTTAGTTGATTCATTTGACAGGTGGGGTTTGTTTTAAAAAAGTTTGCTTGAGCTCATTTATGTTTTAAATCTGGTCCCTTTTTTTTTTTTTAATGTGATGTTGATCATTGATTAGATTAGCTGATTTAAATGAAAGTTATATCGTTGAGCATTTATTGTGGTGTGTAATTCATGGATAAAAGGTTTCTTCTTTGGTAGTGCATTGTGTTTGTTTGATGTTTTTGTTTTATTATGTTTGGAGTAAAGATATGGTTATTTAAGTGTTTGGTTAAAGCACTAGCCTGTTTAGTGTTATGTAGACCAGAATTCTTGAACTAGTAAAAGATCTGAATTTTGATCCTTAAGAAGTTTTGAATGCTTAAAAGATCCAATTGTTGTGGGATGTCCAAGAGGACTTTTGAGTGTTTGAAAGTTATGCTGGTTTCATCACTATGCTGGATCTGCAGTTATTCAACTTCTGATCATATCCCTGGCTTGAGGAATGAGAGCTTCATCTGATCTAAGTCTGCCTTTTGGTTTTAGTTGATCTCGACTAACTTTAGGAACTTAGATAACATTTGACATGAAAGGGTTGGCATGGATCCCTTACATTATGAGAGTGACGTGAGGAGGAACTTTGAAAGTTTTGTTTGAAATAATAAGCCTATGTGTAGAAAATTTAAGATCTTGAGACCTCAATAACCATTTATCACATTCTGAATTCTGATCTAGCTACAAGCTTGTATTTTTCTTACTCTAAATTATGAAAGGCCATGTTATATGCAATTAGTGATGTCTTGGTTTCCTTGCATCTTTTTATCACTTGAGGAAAATGTGCATCTGCATTTGTACTTCCTTTTCAATCCTAACGAGGCACTGAAATTATTTCAGGGCTGCAATGGCGGGCAAAAACTCAGGGGATAATAGGACTAGGACTTCTGTATCAATATTTATAATAGCTGGTCTATGCTGCTTCTTCTATTTACTTGGAGCATGGCAAAGAAGTGGTTTTGGGAAAGGAGATAGTATAGCAGTGGCTGTCACCAAGACTGCTGGTGAGAATTGCGATGTACTACCAAATCTCAATTTTGAAACTCGTCATGCTGGCGAAGCAGGTGGTACTGATGAGTCGGAAGAAGTCGAGGAACTTAAGCCATGTGATCCTCAGTACACTGATTATACACCATGTCAAGATCAAAAGCGTGCTATGACTTTCCCAAGGGAAAATATGAACTACCGAGAAAGGCATTGTCCACCTCAAGAAGAGAAGTTACATTGCCTTATTC</genome_strand>
        <mrna_strand>CGAGTTTTCACTTTCTTC-AAG---TACCATTTTTT-CTGTCTTTGTATGATAGATAGAGAGAAGGAGACGTGTGATTTTGATATATTTGGTTGAAAGAATCATCAAGAAACGATTTTTATGAATTAAAGTTTGGATTTTTGAAGTGGGGTTTGTGTTAAATTCGTTTCTTGATTAA-TTTTTTGGAATTTTTTTAAGGACTGGACCCATAACCCATTTCTGTCTGTTGATAAAGGAAAAGCAATAAAGGGGAAAGAAGAGTTTTTGGAGATCATTTAAGGAATTGTTGGAATATTTTCATGCCATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCAATGGCGGGCAAAAACTCAGGGGATAATAGGACTAGGACTTCTGTATCAATATTTATAATAGCTGGACTATGCTGCTTCTTCTATTTACTTGGAGCATGGCAAAGAAGTGGTTTTGGGAAAGGAGATAGTATAGCAGAGGCCGTCACCAAGACTGCTGGCGAGAATTGCGATATACTACCAAATCTCAATTTTGAAACTCGTCATGCTGGCGAAGCAGGCGGTACTGATGAGTCGGAAGAAGTCGAGGAACTCAAGCCATGTGATCCTCAGTACACTGATTATACACCATGTCAAGATCAAAAGCGTGCTATGACTTTCCCAAGGGAAAATATGAACTACCGAGAAAGGCATTGTCCACCTCAAGAAGAGAAGTTACATTGCCTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442526" ref_strand="+" ref_description="SGN-E442526 [cSTA-33-J18]">
      <seq>cttcaaagtaccattttttctgtctttgtaggatagatagagagaaggagtcgtgtgattatgatatatttggttaaaaaaatcatcaagaaacgattttgatgaattaaagtttggatttttgaagtggggtttgtgttaaataagtttcttggttaattttttggaatattttaaggactggacccataacccatttctgtctgttgataaaggaaaataaataaaggggaaagaagagtttttggagatcatttaaggaattgttggaatattttcatgccgttgggctgcaatggcgggcaaaatctcaggggataataggactaggacttctgtatcaatatttataatagctggtctatgctgcttcttctatttacttggagcatggcaaagaagtggttntgggaaaggagatagtatagcagtggctgtcaccaagactgctggtgagaattgcaatatactaccaaatctcaattttgaaactcgtcacgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="113558" stop="115608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113849" g_stop="114142" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114143" i_stop="115093" i_length="951">
            <donor d_prob="0.669" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115094" g_stop="115308" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="503" r_length="215" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E442526" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113849" e_stop="114142"/>
          <exon e_start="115094" e_stop="115308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAAGTACTACCATTTTTTCCCGTCTTTGTATGATAGATAGAGAGAAGGAGACGTGTGATTTTGATGTATTTGGTTAAAAAAATCGTCAAGAAACGATTTTTATGAATTAAAGTTTGGATTTTTGAAGTGGGGTTTGTGTTAAATTTGTTTCTTGATTAATTTTTTTTGGAATTTTTTAAGGACTGGACCCATAACCCATTGCTGTCTGTTGATAAAGGAAAAGAAATAAAGGGGAAAGAAGAGATTTTGGAGATCATTTAAGGAATTGTTGGAATATTTTCATGCCATTGGTATGTGATTCTTGAATCATGTGTTAGCTGTGATCTGTTTATTTAATCATTGGAACTTTGTGATTTGGATTTGATTTCTTGTTTAGTTGATTCATTTGACAGGTGGGGTTTGTTTTAAAAAAGTTTGCTTGAGCTCATTTATGTTTTAAATCTGGTCCCTTTTTTTTTTTTTAATGTGATGTTGATCATTGATTAGATTAGCTGATTTAAATGAAAGTTATATCGTTGAGCATTTATTGTGGTGTGTAATTCATGGATAAAAGGTTTCTTCTTTGGTAGTGCATTGTGTTTGTTTGATGTTTTTGTTTTATTATGTTTGGAGTAAAGATATGGTTATTTAAGTGTTTGGTTAAAGCACTAGCCTGTTTAGTGTTATGTAGACCAGAATTCTTGAACTAGTAAAAGATCTGAATTTTGATCCTTAAGAAGTTTTGAATGCTTAAAAGATCCAATTGTTGTGGGATGTCCAAGAGGACTTTTGAGTGTTTGAAAGTTATGCTGGTTTCATCACTATGCTGGATCTGCAGTTATTCAACTTCTGATCATATCCCTGGCTTGAGGAATGAGAGCTTCATCTGATCTAAGTCTGCCTTTTGGTTTTAGTTGATCTCGACTAACTTTAGGAACTTAGATAACATTTGACATGAAAGGGTTGGCATGGATCCCTTACATTATGAGAGTGACGTGAGGAGGAACTTTGAAAGTTTTGTTTGAAATAATAAGCCTATGTGTAGAAAATTTAAGATCTTGAGACCTCAATAACCATTTATCACATTCTGAATTCTGATCTAGCTACAAGCTTGTATTTTTCTTACTCTAAATTATGAAAGGCCATGTTATATGCAATTAGTGATGTCTTGGTTTCCTTGCATCTTTTTATCACTTGAGGAAAATGTGCATCTGCATTTGTACTTCCTTTTCAATCCTAACGAGGCACTGAAATTATTTCAGGGCTGCAATGGCGGGCAAAAACTCAGGGGATAATAGGACTAGGACTTCTGTATCAATATTTATAATAGCTGGTCTATGCTGCTTCTTCTATTTACTTGGAGCATGGCAAAGAAGTGGTTTTGGGAAAGGAGATAGTATAGCAGTGGCTGTCACCAAGACTGCTGGTGAGAATTGCGATGTACTACCAAATCTCAATTTTGAAACTCGTCATGCTG</genome_strand>
        <mrna_strand>CTTCAAAG---TACCATTTTTT-CTGTCTTTGTAGGATAGATAGAGAGAAGGAGTCGTGTGATTATGATATATTTGGTTAAAAAAATCATCAAGAAACGATTTTGATGAATTAAAGTTTGGATTTTTGAAGTGGGGTTTGTGTTAAATAAGTTTCTTGGTTAA--TTTTTTGGAATATTTTAAGGACTGGACCCATAACCCATTTCTGTCTGTTGATAAAGGAAAATAAATAAAGGGGAAAGAAGAGTTTTTGGAGATCATTTAAGGAATTGTTGGAATATTTTCATGCCGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCAATGGCGGGCAAAATCTCAGGGGATAATAGGACTAGGACTTCTGTATCAATATTTATAATAGCTGGTCTATGCTGCTTCTTCTATTTACTTGGAGCATGGCAAAGAAGTGGTTNTGGGAAAGGAGATAGTATAGCAGTGGCTGTCACCAAGACTGCTGGTGAGAATTGCAATATACTACCAAATCTCAATTTTGAAACTCGTCACGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745517" ref_strand="+" ref_description="SGN-E745517 [GI|47105937]">
      <seq>gatttaaggaattgttggaatattttcatgccattgggctgcaatggcgggcaaaaactcaggggataataggactaggacttctgtatcaatatttataatagctggtctatgctgcttcttctatttacttggagcatggcaaagaagtggttttgggaaaggagatagtatagcagtggctgtcaccaagactgctggtgagaattgcgatgtactaccaaatctcaattttgaaactcgtcatgctggcgaagcaggtggtactgatgagtcggaagaagtcgaggaacttaagccatgtgatcctcagtacactgattatacaccatgtcaagatcaaaagcgtgctatgactttcccaagggaaaatatgaactaccgagaaaggcattgtccacctcaagaagagaagttacattgccttattccagcacctaagggatatgttaccccatttccgtggccaaaaagtcgggattatgttccctatgccaatgctccatataagagcttgactgttgagaaagctattcagaattgggttcaatatgagggtaatgtgtttaggttcccaggaggagggacacaattccctcaaggagcagataagtatattgatcagcttgcttcagtcgtcccaatcgagaatgggacagttcggactgctttggacactggttgtggggttgcaagttggggtgcttatctttggaaaaggaatgtcatagcaatgtcatttgccccaagagactcacatgaagctcaggttcagtttgctctggaaaggggtgtgcctgctgttattggtgtactaggaacaatcaaaatgccatatccatctaaagcctttgatatggcccattgttctcgttgtctaatcccatggggagctgctgatggaatcctcatgatggaagttgaccgagttcttagacctggaggctactgggtgctttctggacctcctatcaactggaaggtcaattttaaggcctggcaacgccccaaggaggatcttgaggaagaacaaaggaagattgaagaggctgctaaacttctttgctgggagaagatatctgagaagggagagactgctatttggcagaaaagaaaggatagtgcctcatgccgttctgcacaagaaaattctgcagccaaagtttgtaaaccttctgatccagatagtgtctggtacaactaaatggaaatgtgcataacaccaaacaatggtaatggtggagacgagagtctaaagccattccctgagagactttatgctgttcctccaagaattgccaatggattagtttctggagtgtctgttgagaaatatcaagaagacagcaagaaatggaagaaacacgtaagtgcttataagaagatcaacaaactcctggacactggaaggtaccgcaacattatggacatgaatgctggactaggaggttttgcagcagcacttcacgatcccaagttttgggttatgaatgttatgccaacaatagctgagaagaatactttgggagttgtattcgaacggggactgattggtatctatcatgactggtgtgaagcattttctacatacccaaggacatatgatctcattcatgctaatggccttttcagtttatataaggacaagtgtgactttcaagacattctcttagagatggaccgtattttgcgtccagaaggagctgtcattctaagagacaatgtagatgtactgatcaaggtgaagaagataataggaggcatgaggtggaacttcaaattgatggatcatgaggacggtccccttgttcccgaaaaaatactggttgctgtcgaacaatattggactctgggtgataccaactccacatcctcacaatgagatgccaccgaagatgttgtctgaccatatgaactcgtatggatcaggaagaccaacatcttatgaatacaaaatccatggttatgcaagacgtttcacccctaggaattttgatcgagcagggtcccttgacaggtgactccacggcacatctttagtctcgatggatccataaattataccagatgatttagcgtttataactgtcttcattttcttctctgttccatgtctcgttagataatgactctaaaaactgagctacatgggattattatgaagctttttgaaagtcctttgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="113808" stop="120307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114107" g_stop="114142" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114143" i_stop="115093" i_length="951">
            <donor d_prob="0.669" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115094" g_stop="115745" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="688" r_length="652" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115746" i_stop="115861" i_length="116">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115862" g_stop="116072" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="899" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116073" i_stop="116216" i_length="144">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116217" g_stop="116511" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="900" r_stop="1194" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116512" i_stop="117655" i_length="1144">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117656" g_stop="118030" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1195" r_stop="1569" r_length="375" r_score="0.997"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118031" i_stop="118850" i_length="820">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118851" g_stop="118928" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1570" r_stop="1647" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="118929" i_stop="119466" i_length="538">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="119467" g_stop="120006" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1648" r_stop="2187" r_length="540" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="120007" i_stop="120120" i_length="114">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="120121" g_stop="120132" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="2188" r_stop="2199" r_length="12" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E745517" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2199</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114107" e_stop="114142"/>
          <exon e_start="115094" e_stop="115745"/>
          <exon e_start="115862" e_stop="116072"/>
          <exon e_start="116217" e_stop="116511"/>
          <exon e_start="117656" e_stop="118030"/>
          <exon e_start="118851" e_stop="118928"/>
          <exon e_start="119467" e_stop="120006"/>
          <exon e_start="120121" e_stop="120132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTAAGGAATTGTTGGAATATTTTCATGCCATTGGTATGTGATTCTTGAATCATGTGTTAGCTGTGATCTGTTTATTTAATCATTGGAACTTTGTGATTTGGATTTGATTTCTTGTTTAGTTGATTCATTTGACAGGTGGGGTTTGTTTTAAAAAAGTTTGCTTGAGCTCATTTATGTTTTAAATCTGGTCCCTTTTTTTTTTTTTAATGTGATGTTGATCATTGATTAGATTAGCTGATTTAAATGAAAGTTATATCGTTGAGCATTTATTGTGGTGTGTAATTCATGGATAAAAGGTTTCTTCTTTGGTAGTGCATTGTGTTTGTTTGATGTTTTTGTTTTATTATGTTTGGAGTAAAGATATGGTTATTTAAGTGTTTGGTTAAAGCACTAGCCTGTTTAGTGTTATGTAGACCAGAATTCTTGAACTAGTAAAAGATCTGAATTTTGATCCTTAAGAAGTTTTGAATGCTTAAAAGATCCAATTGTTGTGGGATGTCCAAGAGGACTTTTGAGTGTTTGAAAGTTATGCTGGTTTCATCACTATGCTGGATCTGCAGTTATTCAACTTCTGATCATATCCCTGGCTTGAGGAATGAGAGCTTCATCTGATCTAAGTCTGCCTTTTGGTTTTAGTTGATCTCGACTAACTTTAGGAACTTAGATAACATTTGACATGAAAGGGTTGGCATGGATCCCTTACATTATGAGAGTGACGTGAGGAGGAACTTTGAAAGTTTTGTTTGAAATAATAAGCCTATGTGTAGAAAATTTAAGATCTTGAGACCTCAATAACCATTTATCACATTCTGAATTCTGATCTAGCTACAAGCTTGTATTTTTCTTACTCTAAATTATGAAAGGCCATGTTATATGCAATTAGTGATGTCTTGGTTTCCTTGCATCTTTTTATCACTTGAGGAAAATGTGCATCTGCATTTGTACTTCCTTTTCAATCCTAACGAGGCACTGAAATTATTTCAGGGCTGCAATGGCGGGCAAAAACTCAGGGGATAATAGGACTAGGACTTCTGTATCAATATTTATAATAGCTGGTCTATGCTGCTTCTTCTATTTACTTGGAGCATGGCAAAGAAGTGGTTTTGGGAAAGGAGATAGTATAGCAGTGGCTGTCACCAAGACTGCTGGTGAGAATTGCGATGTACTACCAAATCTCAATTTTGAAACTCGTCATGCTGGCGAAGCAGGTGGTACTGATGAGTCGGAAGAAGTCGAGGAACTTAAGCCATGTGATCCTCAGTACACTGATTATACACCATGTCAAGATCAAAAGCGTGCTATGACTTTCCCAAGGGAAAATATGAACTACCGAGAAAGGCATTGTCCACCTCAAGAAGAGAAGTTACATTGCCTTATTCCAGCACCTAAGGGATATGTTACCCCATTTCCGTGGCCAAAAAGTCGGGATTATGTTCCCTATGCCAATGCTCCATATAAGAGCTTGACTGTTGAGAAAGCTATTCAGAATTGGGTTCAATATGAGGGTAATGTGTTTAGGTTCCCAGGAGGAGGGACACAATTCCCTCAAGGAGCAGATAAGTATATTGATCAGCTTGCTTCAGTCGTCCCAATCGAGAATGGGACAGTTCGGACTGCTTTGGACACTGGTTGTGGGGTATGTTTCCTGCTTCGTGAACTGTTTTCTTCTCTAAACACATGTGTCTTTGCTTACATGGGAAGTATTTGTTATTCTATTGCTGTTTTGGCTAAGAATTTCTCAAATTGTGCTAGGTTGCAAGTTGGGGTGCTTATCTTTGGAAAAGGAATGTCATAGCAATGTCATTTGCCCCAAGAGACTCACATGAAGCTCAGGTTCAGTTTGCTCTGGAAAGGGGTGTGCCTGCTGTTATTGGTGTACTAGGAACAATCAAAATGCCATATCCATCTAAAGCCTTTGATATGGCCCATTGTTCTCGTTGTCTAATCCCATGGGGAGCTGCTGGTATGTATCTCATGTTGATATCCAAAAAATGGTTAAATTTTTAAAATTAGAGAGGCATTGTACTTGTTTGTCTGTATGTTTTAGCTAATTATTTCTTTCTGATGATGGTTTTTTAATTGCATTAATTGTTCATTCGTCATGTAGATGGAATCCTCATGATGGAAGTTGACCGAGTTCTTAGACCTGGAGGCTACTGGGTGCTTTCTGGACCTCCTATCAACTGGAAGGTCAATTTTAAGGCCTGGCAACGCCCCAAGGAGGATCTTGAGGAAGAACAAAGGAAGATTGAAGAGGCTGCTAAACTTCTTTGCTGGGAGAAGATATCTGAGAAGGGAGAGACTGCTATTTGGCAGAAAAGAAAGGATAGTGCCTCATGCCGTTCTGCACAAGAAAATTCTGCAGCCAAAGTTTGTAAACCTTCTGATCCAGATAGTGTCTGGTATGTCATCATACTTAATAGTTCAATTGTATGTGTTGGAGGTTCTCATATCTTCTCTTGGGAAAATGAAAAAGGTGAATGTGCTTCATGCGTCTCTATTCCTATGAGTGGCAGCTCTATTCTACTGTGAAATAGGTTTCTTGAGGTGCTTTAGAAATAAATTAGATCATGCCACCAGTTAGAATTACTTGAACATGAGAAACTTGTTTCTTTAGATGAATAGCATGTCAAGAAGGTTCAGTATGCGAATTTGAATTGTCTAGGTGGCAGAAAACTCACTAAGTATGCAGGACAATCCATTTGCCATAATCTGATAAGGTAAATATCACATTGTTAACTTACTAAGCAAACTGCGTTATGGAAGTGGCTTAGTGCATGCTACAACTTATCTCAACTCTCCAAGCCAAGGCCCTTCCTAAAAAAAGCGAAAAGAAAAAGGATAGACTGAGGTTCTTTCATTACATTGGACATGTAACTGTCAGTTTAAAAATTTCTTTAATGATTTAAGCTGTATGTTAGAAGTAAGATTTTCCTTCATATTTAGTTACATCCTGGTTTGAACATAGAAGCAATTTAAATAACTTGTTCTGCACTTCAATCTTTTCTCCTGTTCTCTTATCAACAGTTCTGGTCATCTAATTATTCGACAGCCACTTCTGCTTATTAAGCCAGCTGAAATTGTTCATTTGATGCTTAGTTCTTGTTGAGCACAATATATTTACTACCACAGGAATGCATCAACTGATAGCTAATAGCACGATGAACAGCACTGTCCTGTTTTGATGACCATAAACAAGATAACCCTTGCTTCATTTTGTCCAAACTGGTTTCTGATAGAATTGAGTATTTTAACTGGTTTAATTTACAGCTTTTAGTTTTAGGATTTCCAGAGAATGTAAAGTAATTCACATTTTATCTATAAATGCCTTTTTTTGCTGAATGTGACAGTAGGATTGGTATTGTGTTTTGAATAATTCGATATTTTGCAGTAAGTGATACAACCCTGAAATTGGTTGTTGTATATTGAAATGCATGATTACTGTGTTTTGTTTGAGGCAGCTTCAGTGGTCTTGTTGTGTTCATATTGTATCAATATTGAAAACAAGCTCATGGCTGATCCATTATTTTTACCTTTTTGGTTCAGGTACAACAAAATGGAAATGTGCATAACACCAAACAATGGTAATGGTGGAGACGAGAGTCTAAAGCCATTCCCTGAGAGACTTTATGCTGTTCCTCCAAGAATTGCCAATGGATTAGTTTCTGGAGTGTCTGTTGAGAAATATCAAGAAGACAGCAAGAAATGGAAGAAACACGTAAGTGCTTATAAGAAGATCAACAAACTCCTGGACACTGGAAGGTACCGCAACATTATGGACATGAATGCTGGACTAGGAGGTTTTGCAGCAGCACTTCACGATCCCAAGTTTTGGGTTATGAATGTTATGCCAACAATAGCTGAGAAGAATACTTTGGGAGTTGTATTCGAACGGGGACTGATTGGTATCTATCATGACTGGTACGTACTAATAGGGTATGAATGATCTATAGTTCTGATATTGAGATGATGATGTAGTTATTGGTGTCTCCTTATAATCTATCTTTTTAGGAATTACTCTCGTTGTCTCCCTCATAATCTGACTTTTTAGGAATTCAGTCCGTGTTTACTCTTGTCATGCAATTCCAGTCTCTGTTTACTGGTGGTCCTTCTCTTTCTTCAAAATTTTCATTATAGCTTTTTACTCTTGCATTTCTTTCAGACTGATTCTGAAAAATGTTTTTCTTGAGACAAAGGGTCTATCAAAAACAGTCTTTCTACCCCACAAAGGTCTGAATACACCCCACCCTCCCCACACCCCACTTGTGGGACTCTACTGGGTATGTTGTTATTGTTGATTTAACAGACATAGGACCATATGATAGAAACTCTCCTTTCCCCTGGTTCAATGTGTTTTGTTTACATGCTGGAGCTAAGATCAAGACTTTCACCCTAGTAAATGTCTAAATTTGTTAAAAATAGATGACTATGTCATTTCGTTTTTGACGAAATTCTCTATTATGAGTCCATGAAAATGTTTCACAAATGCACCTAAGATCCATATATACAAAAGTAATTTTCTCATTTGTTTCTATCAAAACGTACTCATGCTTTATTAAAATAGCAAAAAGGATGTCAAGAAAATGCAGTATGCTGTTTGAGAAAATAGCGTGTATCAAATTTATCTTTTTTTTTGTTCACAAGGAAGATACTAGTGTTATGTTTTACTTTATTTCTATTTATTCTCTTCCTTATGTAAGAGAAAGCTATCCTCTGATCATATAGTTATCTTCTGATTCAGGTGTGAAGCATTTTCTACATACCCAAGGACATATGATCTCATTCATGCTAATGGCCTTTTCAGTTTATATAAGGACAAGTAAGTTTTTATCTTCGCTATTTATTTATATTGCTAATTTACTTAGTATGTTCTTCATTTAGATAAAGAGCTTAATAGCACGGTGGTATTGCAGCTCCTTTATTGAAGGTCCTATTGTTGGCCGTGCCTAGTTGCTAATTAAGTAAAAAGGTCTAAATAATTGTGATATGATAAGAGCAAAGGTAGCTTAAGTAAATATACACTGATAGTAGATGATCATACACTTAAAATTTTAGGATAGTAACCTTCTCAGTATATGGTATAATGACTGATATTTGAAGTACCGACAGAAGTTTGCGTGTGTTGTGGCTAAATCCACCATCATTTCTCCTTTTTGCTGCTGTGACTTAATATGCTGTTATTCGTAACTGCACTGTTCTTGTTGAAATAGAAATGCCAGCTCGTCACTCTGGCAACTCATATCTCCCCCGTCTACTGATCCCCAGCCAGGAAAAGAAAAAAATACCCAGTTAAAGGGTGCTACAGGAAGAAAAATAATTGGTATCATTGACTAAATTAGCATTTTCTAATTTTATAGGTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGAACTTCAAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTCAAACAATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCATATGAACTCGTATGGATCAGGAAGACCAACATCTTATGAATACAAAATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGAAGCTTTTTGAAAGTCCTTTATAAACATTTCTTCCCTCGATATATAGACTCTGTAATGTGTTGTTTAATTAAAGTGGAAATTTGATCTAGTTGATTTCTGATATGATATCTTGATTCAGTAATTGTTTTTTCTTCAATAGAATGAGAAAAGA</genome_strand>
        <mrna_strand>GATTTAAGGAATTGTTGGAATATTTTCATGCCATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCAATGGCGGGCAAAAACTCAGGGGATAATAGGACTAGGACTTCTGTATCAATATTTATAATAGCTGGTCTATGCTGCTTCTTCTATTTACTTGGAGCATGGCAAAGAAGTGGTTTTGGGAAAGGAGATAGTATAGCAGTGGCTGTCACCAAGACTGCTGGTGAGAATTGCGATGTACTACCAAATCTCAATTTTGAAACTCGTCATGCTGGCGAAGCAGGTGGTACTGATGAGTCGGAAGAAGTCGAGGAACTTAAGCCATGTGATCCTCAGTACACTGATTATACACCATGTCAAGATCAAAAGCGTGCTATGACTTTCCCAAGGGAAAATATGAACTACCGAGAAAGGCATTGTCCACCTCAAGAAGAGAAGTTACATTGCCTTATTCCAGCACCTAAGGGATATGTTACCCCATTTCCGTGGCCAAAAAGTCGGGATTATGTTCCCTATGCCAATGCTCCATATAAGAGCTTGACTGTTGAGAAAGCTATTCAGAATTGGGTTCAATATGAGGGTAATGTGTTTAGGTTCCCAGGAGGAGGGACACAATTCCCTCAAGGAGCAGATAAGTATATTGATCAGCTTGCTTCAGTCGTCCCAATCGAGAATGGGACAGTTCGGACTGCTTTGGACACTGGTTGTGGG....................................................................................................................GTTGCAAGTTGGGGTGCTTATCTTTGGAAAAGGAATGTCATAGCAATGTCATTTGCCCCAAGAGACTCACATGAAGCTCAGGTTCAGTTTGCTCTGGAAAGGGGTGTGCCTGCTGTTATTGGTGTACTAGGAACAATCAAAATGCCATATCCATCTAAAGCCTTTGATATGGCCCATTGTTCTCGTTGTCTAATCCCATGGGGAGCTGCTG................................................................................................................................................ATGGAATCCTCATGATGGAAGTTGACCGAGTTCTTAGACCTGGAGGCTACTGGGTGCTTTCTGGACCTCCTATCAACTGGAAGGTCAATTTTAAGGCCTGGCAACGCCCCAAGGAGGATCTTGAGGAAGAACAAAGGAAGATTGAAGAGGCTGCTAAACTTCTTTGCTGGGAGAAGATATCTGAGAAGGGAGAGACTGCTATTTGGCAGAAAAGAAAGGATAGTGCCTCATGCCGTTCTGCACAAGAAAATTCTGCAGCCAAAGTTTGTAAACCTTCTGATCCAGATAGTGTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAACTAAATGGAAATGTGCATAACACCAAACAATGGTAATGGTGGAGACGAGAGTCTAAAGCCATTCCCTGAGAGACTTTATGCTGTTCCTCCAAGAATTGCCAATGGATTAGTTTCTGGAGTGTCTGTTGAGAAATATCAAGAAGACAGCAAGAAATGGAAGAAACACGTAAGTGCTTATAAGAAGATCAACAAACTCCTGGACACTGGAAGGTACCGCAACATTATGGACATGAATGCTGGACTAGGAGGTTTTGCAGCAGCACTTCACGATCCCAAGTTTTGGGTTATGAATGTTATGCCAACAATAGCTGAGAAGAATACTTTGGGAGTTGTATTCGAACGGGGACTGATTGGTATCTATCATGACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGCATTTTCTACATACCCAAGGACATATGATCTCATTCATGCTAATGGCCTTTTCAGTTTATATAAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGAACTTCAAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTCGAACAATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCATATGAACTCGTATGGATCAGGAAGACCAACATCTTATGAATACAAAATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTCGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGAAGCTTTTTGAAAGTCCTTTGTAAAA..................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320284" ref_strand="+" ref_description="SGN-E320284 [cTOB-21-N5]">
      <seq>aattgttggaatattttcatgccattgggctgcaatggcgggcaaaaactcaggggataataggactaggacttctgtatcaatatttataatagctgggctatgctgcttcttctatttacttggagcatggcaaagaagtggttttgggaaaggagatagtatagcagtggctgtcaccaagactgctggtgagaattgcgatgtactaccaaatctcaattttgaaactcggcatgctggcgaagcaggtggtactgatgagtcggaagaagtcgaggaacttaagccatgtgatcctcagtacactgattatacaccatgtcaagatcaaaagcgtgctatgactttcccaagggaaaatatgaactaccgagaaaggcattgtccacctcaagaagagaagttacattgccttattccagcacctaagggatatgttaccccatttccgtggccagaaagtcgggattatgttccctatgccaatgctccatataagagcttgactgttgagaaagctattcagaattgcgttcaatatgagggtaatgtgtttaggttcccaggaggacggacacaattccctcaacgagcagataagtatattgatcagcttgcttcagtcgtcccaatcgagaatgggacagttcggactgctctggacactggttgtggggatgcaagttggggtgcttatctttgggaaaggatgtcatagcaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="113816" stop="116210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114116" g_stop="114142" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114143" i_stop="115093" i_length="951">
            <donor d_prob="0.669" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115094" g_stop="115745" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="679" r_length="652" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115746" i_stop="115861" i_length="116">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115862" g_stop="115910" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="727" r_length="48" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E320284" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114116" e_stop="114142"/>
          <exon e_start="115094" e_stop="115745"/>
          <exon e_start="115862" e_stop="115910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTTGGAATATTTTCATGCCATTGGTATGTGATTCTTGAATCATGTGTTAGCTGTGATCTGTTTATTTAATCATTGGAACTTTGTGATTTGGATTTGATTTCTTGTTTAGTTGATTCATTTGACAGGTGGGGTTTGTTTTAAAAAAGTTTGCTTGAGCTCATTTATGTTTTAAATCTGGTCCCTTTTTTTTTTTTTAATGTGATGTTGATCATTGATTAGATTAGCTGATTTAAATGAAAGTTATATCGTTGAGCATTTATTGTGGTGTGTAATTCATGGATAAAAGGTTTCTTCTTTGGTAGTGCATTGTGTTTGTTTGATGTTTTTGTTTTATTATGTTTGGAGTAAAGATATGGTTATTTAAGTGTTTGGTTAAAGCACTAGCCTGTTTAGTGTTATGTAGACCAGAATTCTTGAACTAGTAAAAGATCTGAATTTTGATCCTTAAGAAGTTTTGAATGCTTAAAAGATCCAATTGTTGTGGGATGTCCAAGAGGACTTTTGAGTGTTTGAAAGTTATGCTGGTTTCATCACTATGCTGGATCTGCAGTTATTCAACTTCTGATCATATCCCTGGCTTGAGGAATGAGAGCTTCATCTGATCTAAGTCTGCCTTTTGGTTTTAGTTGATCTCGACTAACTTTAGGAACTTAGATAACATTTGACATGAAAGGGTTGGCATGGATCCCTTACATTATGAGAGTGACGTGAGGAGGAACTTTGAAAGTTTTGTTTGAAATAATAAGCCTATGTGTAGAAAATTTAAGATCTTGAGACCTCAATAACCATTTATCACATTCTGAATTCTGATCTAGCTACAAGCTTGTATTTTTCTTACTCTAAATTATGAAAGGCCATGTTATATGCAATTAGTGATGTCTTGGTTTCCTTGCATCTTTTTATCACTTGAGGAAAATGTGCATCTGCATTTGTACTTCCTTTTCAATCCTAACGAGGCACTGAAATTATTTCAGGGCTGCAATGGCGGGCAAAAACTCAGGGGATAATAGGACTAGGACTTCTGTATCAATATTTATAATAGCTGGTCTATGCTGCTTCTTCTATTTACTTGGAGCATGGCAAAGAAGTGGTTTTGGGAAAGGAGATAGTATAGCAGTGGCTGTCACCAAGACTGCTGGTGAGAATTGCGATGTACTACCAAATCTCAATTTTGAAACTCGTCATGCTGGCGAAGCAGGTGGTACTGATGAGTCGGAAGAAGTCGAGGAACTTAAGCCATGTGATCCTCAGTACACTGATTATACACCATGTCAAGATCAAAAGCGTGCTATGACTTTCCCAAGGGAAAATATGAACTACCGAGAAAGGCATTGTCCACCTCAAGAAGAGAAGTTACATTGCCTTATTCCAGCACCTAAGGGATATGTTACCCCATTTCCGTGGCCAAAAAGTCGGGATTATGTTCCCTATGCCAATGCTCCATATAAGAGCTTGACTGTTGAGAAAGCTATTCAGAATTGGGTTCAATATGAGGGTAATGTGTTTAGGTTCCCAGGAGGAGGGACACAATTCCCTCAAGGAGCAGATAAGTATATTGATCAGCTTGCTTCAGTCGTCCCAATCGAGAATGGGACAGTTCGGACTGCTTTGGACACTGGTTGTGGGGTATGTTTCCTGCTTCGTGAACTGTTTTCTTCTCTAAACACATGTGTCTTTGCTTACATGGGAAGTATTTGTTATTCTATTGCTGTTTTGGCTAAGAATTTCTCAAATTGTGCTAGGTTGCAAGTTGGGGTGCTTATCTTTGGAAAAGGAATGTCATAGCAATGT</genome_strand>
        <mrna_strand>AATTGTTGGAATATTTTCATGCCATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCAATGGCGGGCAAAAACTCAGGGGATAATAGGACTAGGACTTCTGTATCAATATTTATAATAGCTGGGCTATGCTGCTTCTTCTATTTACTTGGAGCATGGCAAAGAAGTGGTTTTGGGAAAGGAGATAGTATAGCAGTGGCTGTCACCAAGACTGCTGGTGAGAATTGCGATGTACTACCAAATCTCAATTTTGAAACTCGGCATGCTGGCGAAGCAGGTGGTACTGATGAGTCGGAAGAAGTCGAGGAACTTAAGCCATGTGATCCTCAGTACACTGATTATACACCATGTCAAGATCAAAAGCGTGCTATGACTTTCCCAAGGGAAAATATGAACTACCGAGAAAGGCATTGTCCACCTCAAGAAGAGAAGTTACATTGCCTTATTCCAGCACCTAAGGGATATGTTACCCCATTTCCGTGGCCAGAAAGTCGGGATTATGTTCCCTATGCCAATGCTCCATATAAGAGCTTGACTGTTGAGAAAGCTATTCAGAATTGCGTTCAATATGAGGGTAATGTGTTTAGGTTCCCAGGAGGACGGACACAATTCCCTCAACGAGCAGATAAGTATATTGATCAGCTTGCTTCAGTCGTCCCAATCGAGAATGGGACAGTTCGGACTGCTCTGGACACTGGTTGTGGG....................................................................................................................GATGCAAGTTGGGGTGCTTATCTTTGGGAAAGG-ATGTCATAGCAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537901" ref_strand="+" ref_description="SGN-E537901 [TUS-56-L21]">
      <seq>gcttgaatcatgtgttagctgtgatctgtttatttaatcattggaactttgtgatttggatttgatttcttgtttagttgattcatttgacagggctgcaatggcgggcaaaaactcaggggataataggactaggacttctgtatcaatatttataatagctggtctatgctgcttcttctatttacttggagcatggcaaagaagtggttttgggaaaggagatagtatagcagtggctgtcaccaagactgctggtgagaattgcgatgtactaccaaatctcaattttgaaactcgtcatgctggcgaagcaggtggtactgatgagtcggaagaagtcgaggaacttaagccatgtgatcctcagtacactgattatacaccatgtcaagatcaaaagcgtgctatgactttcccaagggaaaatatgaactaccgagaaaggcattgtccacctcaagaagagaagttacattgccttattccagcacctaagggatatgttaccccatttccgtggccaaaaagtcgggattatgttccctatgccaatgctccatataagagcttgactgttgagaaagctattcagaattgggttcaatatgagggtaatgtgtttaggttcccaggaggagggacacaattccctcaaggagcagataagtatattgatcagcttgcttcagtcgtcccaatcgagaatgggacagttcggactgctttggacactggttgtggggttgcaagtgggggtgcttatctttggaaangaatgtcatagcaatgtcatttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="113853" stop="116218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114152" g_stop="114244" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114245" i_stop="115093" i_length="849">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115094" g_stop="115745" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="745" r_length="652" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115746" i_stop="115861" i_length="116">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115862" g_stop="115918" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="801" r_length="56" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E537901" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114152" e_stop="114244"/>
          <exon e_start="115094" e_stop="115745"/>
          <exon e_start="115862" e_stop="115918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGAATCATGTGTTAGCTGTGATCTGTTTATTTAATCATTGGAACTTTGTGATTTGGATTTGATTTCTTGTTTAGTTGATTCATTTGACAGGTGGGGTTTGTTTTAAAAAAGTTTGCTTGAGCTCATTTATGTTTTAAATCTGGTCCCTTTTTTTTTTTTTAATGTGATGTTGATCATTGATTAGATTAGCTGATTTAAATGAAAGTTATATCGTTGAGCATTTATTGTGGTGTGTAATTCATGGATAAAAGGTTTCTTCTTTGGTAGTGCATTGTGTTTGTTTGATGTTTTTGTTTTATTATGTTTGGAGTAAAGATATGGTTATTTAAGTGTTTGGTTAAAGCACTAGCCTGTTTAGTGTTATGTAGACCAGAATTCTTGAACTAGTAAAAGATCTGAATTTTGATCCTTAAGAAGTTTTGAATGCTTAAAAGATCCAATTGTTGTGGGATGTCCAAGAGGACTTTTGAGTGTTTGAAAGTTATGCTGGTTTCATCACTATGCTGGATCTGCAGTTATTCAACTTCTGATCATATCCCTGGCTTGAGGAATGAGAGCTTCATCTGATCTAAGTCTGCCTTTTGGTTTTAGTTGATCTCGACTAACTTTAGGAACTTAGATAACATTTGACATGAAAGGGTTGGCATGGATCCCTTACATTATGAGAGTGACGTGAGGAGGAACTTTGAAAGTTTTGTTTGAAATAATAAGCCTATGTGTAGAAAATTTAAGATCTTGAGACCTCAATAACCATTTATCACATTCTGAATTCTGATCTAGCTACAAGCTTGTATTTTTCTTACTCTAAATTATGAAAGGCCATGTTATATGCAATTAGTGATGTCTTGGTTTCCTTGCATCTTTTTATCACTTGAGGAAAATGTGCATCTGCATTTGTACTTCCTTTTCAATCCTAACGAGGCACTGAAATTATTTCAGGGCTGCAATGGCGGGCAAAAACTCAGGGGATAATAGGACTAGGACTTCTGTATCAATATTTATAATAGCTGGTCTATGCTGCTTCTTCTATTTACTTGGAGCATGGCAAAGAAGTGGTTTTGGGAAAGGAGATAGTATAGCAGTGGCTGTCACCAAGACTGCTGGTGAGAATTGCGATGTACTACCAAATCTCAATTTTGAAACTCGTCATGCTGGCGAAGCAGGTGGTACTGATGAGTCGGAAGAAGTCGAGGAACTTAAGCCATGTGATCCTCAGTACACTGATTATACACCATGTCAAGATCAAAAGCGTGCTATGACTTTCCCAAGGGAAAATATGAACTACCGAGAAAGGCATTGTCCACCTCAAGAAGAGAAGTTACATTGCCTTATTCCAGCACCTAAGGGATATGTTACCCCATTTCCGTGGCCAAAAAGTCGGGATTATGTTCCCTATGCCAATGCTCCATATAAGAGCTTGACTGTTGAGAAAGCTATTCAGAATTGGGTTCAATATGAGGGTAATGTGTTTAGGTTCCCAGGAGGAGGGACACAATTCCCTCAAGGAGCAGATAAGTATATTGATCAGCTTGCTTCAGTCGTCCCAATCGAGAATGGGACAGTTCGGACTGCTTTGGACACTGGTTGTGGGGTATGTTTCCTGCTTCGTGAACTGTTTTCTTCTCTAAACACATGTGTCTTTGCTTACATGGGAAGTATTTGTTATTCTATTGCTGTTTTGGCTAAGAATTTCTCAAATTGTGCTAGGTTGCAAGTTGGGGTGCTTATCTTTGGAAAAGGAATGTCATAGCAATGTCATTTGCC</genome_strand>
        <mrna_strand>GCTTGAATCATGTGTTAGCTGTGATCTGTTTATTTAATCATTGGAACTTTGTGATTTGGATTTGATTTCTTGTTTAGTTGATTCATTTGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCAATGGCGGGCAAAAACTCAGGGGATAATAGGACTAGGACTTCTGTATCAATATTTATAATAGCTGGTCTATGCTGCTTCTTCTATTTACTTGGAGCATGGCAAAGAAGTGGTTTTGGGAAAGGAGATAGTATAGCAGTGGCTGTCACCAAGACTGCTGGTGAGAATTGCGATGTACTACCAAATCTCAATTTTGAAACTCGTCATGCTGGCGAAGCAGGTGGTACTGATGAGTCGGAAGAAGTCGAGGAACTTAAGCCATGTGATCCTCAGTACACTGATTATACACCATGTCAAGATCAAAAGCGTGCTATGACTTTCCCAAGGGAAAATATGAACTACCGAGAAAGGCATTGTCCACCTCAAGAAGAGAAGTTACATTGCCTTATTCCAGCACCTAAGGGATATGTTACCCCATTTCCGTGGCCAAAAAGTCGGGATTATGTTCCCTATGCCAATGCTCCATATAAGAGCTTGACTGTTGAGAAAGCTATTCAGAATTGGGTTCAATATGAGGGTAATGTGTTTAGGTTCCCAGGAGGAGGGACACAATTCCCTCAAGGAGCAGATAAGTATATTGATCAGCTTGCTTCAGTCGTCCCAATCGAGAATGGGACAGTTCGGACTGCTTTGGACACTGGTTGTGGG....................................................................................................................GTTGCAAGTGGGGGTGCTTATCTTTGG-AAANGAATGTCATAGCAATGTCATTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265363" ref_strand="+" ref_description="SGN-E265363 [cLEI-9-P18]">
      <seq>cttgaatcatgtgttagctgtgatctgtttatttaatcattggaactttgtgatttggatttgatttcttgtttagttgattcatttgacagggctgcaatggcgggcaaaaactcaggggataataggactaggacttctgtatcaatatttataatagctggtctatgctgcttcttctatttacttggagcatggcaaagaagtggttttgggaaaggagatagtatagcagtggctgtcaccaagactgctggtgagaattgcgatgtactaccaaatctcaattttgaaactcgtcatgctggcgaagcaggtggtactgatgagtcggaagaagtcgaggaacttaagccatgtgatcctcagtacactgattatacaccatgtcaagatcaaaagcgtgctatgactttcccaagggaaaatatgaactaccgagaaaggcattgtccacctcaagaagagaagttacattgccttattccagcacctaagggatatgttaccccatttccgtggccaaaaagtcgggattatgttccctatgccaatgctccatataagagcttgactgttgagaaagctattcagaattgggttcaatatgagggtaatgtgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="113853" stop="115925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114153" g_stop="114244" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114245" i_stop="115093" i_length="849">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115094" g_stop="115625" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="624" r_length="532" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E265363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114153" e_stop="114244"/>
          <exon e_start="115094" e_stop="115625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAATCATGTGTTAGCTGTGATCTGTTTATTTAATCATTGGAACTTTGTGATTTGGATTTGATTTCTTGTTTAGTTGATTCATTTGACAGGTGGGGTTTGTTTTAAAAAAGTTTGCTTGAGCTCATTTATGTTTTAAATCTGGTCCCTTTTTTTTTTTTTAATGTGATGTTGATCATTGATTAGATTAGCTGATTTAAATGAAAGTTATATCGTTGAGCATTTATTGTGGTGTGTAATTCATGGATAAAAGGTTTCTTCTTTGGTAGTGCATTGTGTTTGTTTGATGTTTTTGTTTTATTATGTTTGGAGTAAAGATATGGTTATTTAAGTGTTTGGTTAAAGCACTAGCCTGTTTAGTGTTATGTAGACCAGAATTCTTGAACTAGTAAAAGATCTGAATTTTGATCCTTAAGAAGTTTTGAATGCTTAAAAGATCCAATTGTTGTGGGATGTCCAAGAGGACTTTTGAGTGTTTGAAAGTTATGCTGGTTTCATCACTATGCTGGATCTGCAGTTATTCAACTTCTGATCATATCCCTGGCTTGAGGAATGAGAGCTTCATCTGATCTAAGTCTGCCTTTTGGTTTTAGTTGATCTCGACTAACTTTAGGAACTTAGATAACATTTGACATGAAAGGGTTGGCATGGATCCCTTACATTATGAGAGTGACGTGAGGAGGAACTTTGAAAGTTTTGTTTGAAATAATAAGCCTATGTGTAGAAAATTTAAGATCTTGAGACCTCAATAACCATTTATCACATTCTGAATTCTGATCTAGCTACAAGCTTGTATTTTTCTTACTCTAAATTATGAAAGGCCATGTTATATGCAATTAGTGATGTCTTGGTTTCCTTGCATCTTTTTATCACTTGAGGAAAATGTGCATCTGCATTTGTACTTCCTTTTCAATCCTAACGAGGCACTGAAATTATTTCAGGGCTGCAATGGCGGGCAAAAACTCAGGGGATAATAGGACTAGGACTTCTGTATCAATATTTATAATAGCTGGTCTATGCTGCTTCTTCTATTTACTTGGAGCATGGCAAAGAAGTGGTTTTGGGAAAGGAGATAGTATAGCAGTGGCTGTCACCAAGACTGCTGGTGAGAATTGCGATGTACTACCAAATCTCAATTTTGAAACTCGTCATGCTGGCGAAGCAGGTGGTACTGATGAGTCGGAAGAAGTCGAGGAACTTAAGCCATGTGATCCTCAGTACACTGATTATACACCATGTCAAGATCAAAAGCGTGCTATGACTTTCCCAAGGGAAAATATGAACTACCGAGAAAGGCATTGTCCACCTCAAGAAGAGAAGTTACATTGCCTTATTCCAGCACCTAAGGGATATGTTACCCCATTTCCGTGGCCAAAAAGTCGGGATTATGTTCCCTATGCCAATGCTCCATATAAGAGCTTGACTGTTGAGAAAGCTATTCAGAATTGGGTTCAATATGAGGGTAATGTGTTT</genome_strand>
        <mrna_strand>CTTGAATCATGTGTTAGCTGTGATCTGTTTATTTAATCATTGGAACTTTGTGATTTGGATTTGATTTCTTGTTTAGTTGATTCATTTGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCAATGGCGGGCAAAAACTCAGGGGATAATAGGACTAGGACTTCTGTATCAATATTTATAATAGCTGGTCTATGCTGCTTCTTCTATTTACTTGGAGCATGGCAAAGAAGTGGTTTTGGGAAAGGAGATAGTATAGCAGTGGCTGTCACCAAGACTGCTGGTGAGAATTGCGATGTACTACCAAATCTCAATTTTGAAACTCGTCATGCTGGCGAAGCAGGTGGTACTGATGAGTCGGAAGAAGTCGAGGAACTTAAGCCATGTGATCCTCAGTACACTGATTATACACCATGTCAAGATCAAAAGCGTGCTATGACTTTCCCAAGGGAAAATATGAACTACCGAGAAAGGCATTGTCCACCTCAAGAAGAGAAGTTACATTGCCTTATTCCAGCACCTAAGGGATATGTTACCCCATTTCCGTGGCCAAAAAGTCGGGATTATGTTCCCTATGCCAATGCTCCATATAAGAGCTTGACTGTTGAGAAAGCTATTCAGAATTGGGTTCAATATGAGGGTAATGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316814" ref_strand="+" ref_description="SGN-E316814 [cTOB-6-I7]">
      <seq>ttacattgccttattccagcacctaagggatatgttaccccatttccgtggccaaaaagtcgggattatgttccctatgccaatgctccatataagagcttgactgctgagaaagctattcagaattgggttcaatatgagggtaatgtgtttaggttcccaggaggagggacacaattccctcaaggagcagataagtatattgatcagcttgcttcagtcgacccaatcgagaatgggacagttcggactgctttggacactggttgtggggttgcaagttggggtgcttatctttggaaaaggaatgccatagcaatgtcatttgccccaagagactcacatgaagctcaggctcagtttgctctggaaaggggtgtgcctgctgctattgatgtactaggaacaatgaaaatgccatatccatctaaagcctttgatatgggccattgatctcgttgtctaatcccatggggagctgctgatggaatcctcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="115173" stop="116532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115473" g_stop="115745" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115746" i_stop="115861" i_length="116">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115862" g_stop="116072" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="484" r_length="211" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116073" i_stop="116216" i_length="144">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116217" g_stop="116232" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="500" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E316814" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115473" e_stop="115745"/>
          <exon e_start="115862" e_stop="116072"/>
          <exon e_start="116217" e_stop="116232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATTGCCTTATTCCAGCACCTAAGGGATATGTTACCCCATTTCCGTGGCCAAAAAGTCGGGATTATGTTCCCTATGCCAATGCTCCATATAAGAGCTTGACTGTTGAGAAAGCTATTCAGAATTGGGTTCAATATGAGGGTAATGTGTTTAGGTTCCCAGGAGGAGGGACACAATTCCCTCAAGGAGCAGATAAGTATATTGATCAGCTTGCTTCAGTCGTCCCAATCGAGAATGGGACAGTTCGGACTGCTTTGGACACTGGTTGTGGGGTATGTTTCCTGCTTCGTGAACTGTTTTCTTCTCTAAACACATGTGTCTTTGCTTACATGGGAAGTATTTGTTATTCTATTGCTGTTTTGGCTAAGAATTTCTCAAATTGTGCTAGGTTGCAAGTTGGGGTGCTTATCTTTGGAAAAGGAATGTCATAGCAATGTCATTTGCCCCAAGAGACTCACATGAAGCTCAGGTTCAGTTTGCTCTGGAAAGGGGTGTGCCTGCTGTTATTGGTGTACTAGGAACAATCAAAATGCCATATCCATCTAAAGCCTTTGATATGGCCCATTGTTCTCGTTGTCTAATCCCATGGGGAGCTGCTGGTATGTATCTCATGTTGATATCCAAAAAATGGTTAAATTTTTAAAATTAGAGAGGCATTGTACTTGTTTGTCTGTATGTTTTAGCTAATTATTTCTTTCTGATGATGGTTTTTTAATTGCATTAATTGTTCATTCGTCATGTAGATGGAATCCTCATGAT</genome_strand>
        <mrna_strand>TTACATTGCCTTATTCCAGCACCTAAGGGATATGTTACCCCATTTCCGTGGCCAAAAAGTCGGGATTATGTTCCCTATGCCAATGCTCCATATAAGAGCTTGACTGCTGAGAAAGCTATTCAGAATTGGGTTCAATATGAGGGTAATGTGTTTAGGTTCCCAGGAGGAGGGACACAATTCCCTCAAGGAGCAGATAAGTATATTGATCAGCTTGCTTCAGTCGACCCAATCGAGAATGGGACAGTTCGGACTGCTTTGGACACTGGTTGTGGG....................................................................................................................GTTGCAAGTTGGGGTGCTTATCTTTGGAAAAGGAATGCCATAGCAATGTCATTTGCCCCAAGAGACTCACATGAAGCTCAGGCTCAGTTTGCTCTGGAAAGGGGTGTGCCTGCTGCTATTGATGTACTAGGAACAATGAAAATGCCATATCCATCTAAAGCCTTTGATATGGGCCATTGATCTCGTTGTCTAATCCCATGGGGAGCTGCTG................................................................................................................................................ATGGAATCCTCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557646" ref_strand="+" ref_description="SGN-E557646 [16478]">
      <seq>gtttagattcccaggaggagggacacaattccctcaaggagcagataagtatattgatcagcttgcttcagttgtcccaatcgaaaatgggacagttcggactgctttggacactggttgtggggttgcaagttggggtgcttatctttggaaaagaaatgtcatagcaatgtcatttgccccaagagactcacatgaagctcaggttcagtttgccctggaaaggggtgtgcctgctgttattggtgtactaggaacaatcaaaatgccatatccatctaaagcctttgatatggcccattgttctcgttgtctaatcccatggggagctgctgatggaatcctcatgatggaagttgaccgagttcttagacctggaggctactgggtgctttctggacctcctatcaactggaaggttaattttaaggcctggcaacgccccaaggaggatcttgaggaagaacaaaggaagattgaaggaggctgctaaacttcttggctgggagaagatttctgagaagggagagactgctattgggcagaaaaagaaaggatagtgcctcatgcccgttctgcacaagaaaatcctgcagccagagttgtaaacccttctgatccagatagtgtctggtacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="115322" stop="116814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115622" g_stop="115745" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115746" i_stop="115861" i_length="116">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115862" g_stop="116072" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="335" r_length="211" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116073" i_stop="116216" i_length="144">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116217" g_stop="116511" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="633" r_length="298" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E557646" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115622" e_stop="115745"/>
          <exon e_start="115862" e_stop="116072"/>
          <exon e_start="116217" e_stop="116511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAGGTTCCCAGGAGGAGGGACACAATTCCCTCAAGGAGCAGATAAGTATATTGATCAGCTTGCTTCAGTCGTCCCAATCGAGAATGGGACAGTTCGGACTGCTTTGGACACTGGTTGTGGGGTATGTTTCCTGCTTCGTGAACTGTTTTCTTCTCTAAACACATGTGTCTTTGCTTACATGGGAAGTATTTGTTATTCTATTGCTGTTTTGGCTAAGAATTTCTCAAATTGTGCTAGGTTGCAAGTTGGGGTGCTTATCTTTGGAAAAGGAATGTCATAGCAATGTCATTTGCCCCAAGAGACTCACATGAAGCTCAGGTTCAGTTTGCTCTGGAAAGGGGTGTGCCTGCTGTTATTGGTGTACTAGGAACAATCAAAATGCCATATCCATCTAAAGCCTTTGATATGGCCCATTGTTCTCGTTGTCTAATCCCATGGGGAGCTGCTGGTATGTATCTCATGTTGATATCCAAAAAATGGTTAAATTTTTAAAATTAGAGAGGCATTGTACTTGTTTGTCTGTATGTTTTAGCTAATTATTTCTTTCTGATGATGGTTTTTTAATTGCATTAATTGTTCATTCGTCATGTAGATGGAATCCTCATGATGGAAGTTGACCGAGTTCTTAGACCTGGAGGCTACTGGGTGCTTTCTGGACCTCCTATCAACTGGAAGGTCAATTTTAAGGCCTGGCAACGCCCCAAGGAGGATCTTGAGGAAGAACAAAGGAAGATTGAA-GAGGCTGCTAAACTTCTTTGCTGGGAGAAGATATCTGAGAAGGGAGAGACTGCTATTTGGCAG-AAAAGAAAGGATAGTGCCTCATG-CCGTTCTGCACAAGAAAATTCTGCAGCCAAAGTTTGTAAACCTTCTGATCCAGATAGTGTCTG</genome_strand>
        <mrna_strand>GTTTAGATTCCCAGGAGGAGGGACACAATTCCCTCAAGGAGCAGATAAGTATATTGATCAGCTTGCTTCAGTTGTCCCAATCGAAAATGGGACAGTTCGGACTGCTTTGGACACTGGTTGTGGG....................................................................................................................GTTGCAAGTTGGGGTGCTTATCTTTGGAAAAGAAATGTCATAGCAATGTCATTTGCCCCAAGAGACTCACATGAAGCTCAGGTTCAGTTTGCCCTGGAAAGGGGTGTGCCTGCTGTTATTGGTGTACTAGGAACAATCAAAATGCCATATCCATCTAAAGCCTTTGATATGGCCCATTGTTCTCGTTGTCTAATCCCATGGGGAGCTGCTG................................................................................................................................................ATGGAATCCTCATGATGGAAGTTGACCGAGTTCTTAGACCTGGAGGCTACTGGGTGCTTTCTGGACCTCCTATCAACTGGAAGGTTAATTTTAAGGCCTGGCAACGCCCCAAGGAGGATCTTGAGGAAGAACAAAGGAAGATTGAAGGAGGCTGCTAAACTTCTTGGCTGGGAGAAGATTTCTGAGAAGGGAGAGACTGCTATTGGGCAGAAAAAGAAAGGATAGTGCCTCATGCCCGTTCTGCACAAGAAAATCCTGCAGCCAGAGTTGTAAACCCTTCTGATCCAGATAGTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266151" ref_strand="+" ref_description="SGN-E266151 [cLEI-6-H12]">
      <seq>gagcagataaatatattgatcagcttgcttctgtaatcccaattcaaaatggaactgttcggactgctctggacactggttgcggggttgcaagttggggtgcttatctttggaaaaggaatgtcatcgcaatgtcatttgctccacgagactcacatgaagctcaagttcagtttgctcttgaaaggggtgtacctgctgtaattggcgtcctaggaacagtcaaaatgccatatccatctagggcctttgatatggctcattgttctcgctgtctaatcccatggggagctgctgatggaatcctcatgatggaagttgatagagttcttcgacctggtggctactgggtgctttctggccctccgatcaattggaagactaattacaaggcctggcaacgccccatggaggaccttcaggaagaacaaaggaaaattgaagagattgccaaacttctttgctgggagaagaaatctgagaagggtgagactgctatttggcagaaaaggatggatgccgactcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="115360" stop="116737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115660" g_stop="115745" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115746" i_stop="115861" i_length="116">
            <donor d_prob="0.997" d_score="0.86"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115862" g_stop="116072" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="297" r_length="211" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116073" i_stop="116216" i_length="144">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116217" g_stop="116448" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="529" r_length="232" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E266151" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115660" e_stop="115745"/>
          <exon e_start="115862" e_stop="116072"/>
          <exon e_start="116217" e_stop="116448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGATAAGTATATTGATCAGCTTGCTTCAGTCGTCCCAATCGAGAATGGGACAGTTCGGACTGCTTTGGACACTGGTTGTGGGGTATGTTTCCTGCTTCGTGAACTGTTTTCTTCTCTAAACACATGTGTCTTTGCTTACATGGGAAGTATTTGTTATTCTATTGCTGTTTTGGCTAAGAATTTCTCAAATTGTGCTAGGTTGCAAGTTGGGGTGCTTATCTTTGGAAAAGGAATGTCATAGCAATGTCATTTGCCCCAAGAGACTCACATGAAGCTCAGGTTCAGTTTGCTCTGGAAAGGGGTGTGCCTGCTGTTATTGGTGTACTAGGAACAATCAAAATGCCATATCCATCTAAAGCCTTTGATATGGCCCATTGTTCTCGTTGTCTAATCCCATGGGGAGCTGCTGGTATGTATCTCATGTTGATATCCAAAAAATGGTTAAATTTTTAAAATTAGAGAGGCATTGTACTTGTTTGTCTGTATGTTTTAGCTAATTATTTCTTTCTGATGATGGTTTTTTAATTGCATTAATTGTTCATTCGTCATGTAGATGGAATCCTCATGATGGAAGTTGACCGAGTTCTTAGACCTGGAGGCTACTGGGTGCTTTCTGGACCTCCTATCAACTGGAAGGTCAATTTTAAGGCCTGGCAACGCCCCAAGGAGGATCTTGAGGAAGAACAAAGGAAGATTGAAGAGGCTGCTAAACTTCTTTGCTGGGAGAAGATATCTGAGAAGGGAGAGACTGCTATTTGGCAGAAAAGAAAGGATAGTGCCTCATG</genome_strand>
        <mrna_strand>GAGCAGATAAATATATTGATCAGCTTGCTTCTGTAATCCCAATTCAAAATGGAACTGTTCGGACTGCTCTGGACACTGGTTGCGGG....................................................................................................................GTTGCAAGTTGGGGTGCTTATCTTTGGAAAAGGAATGTCATCGCAATGTCATTTGCTCCACGAGACTCACATGAAGCTCAAGTTCAGTTTGCTCTTGAAAGGGGTGTACCTGCTGTAATTGGCGTCCTAGGAACAGTCAAAATGCCATATCCATCTAGGGCCTTTGATATGGCTCATTGTTCTCGCTGTCTAATCCCATGGGGAGCTGCTG................................................................................................................................................ATGGAATCCTCATGATGGAAGTTGATAGAGTTCTTCGACCTGGTGGCTACTGGGTGCTTTCTGGCCCTCCGATCAATTGGAAGACTAATTACAAGGCCTGGCAACGCCCCATGGAGGACCTTCAGGAAGAACAAAGGAAAATTGAAGAGATTGCCAAACTTCTTTGCTGGGAGAAGAAATCTGAGAAGGGTGAGACTGCTATTTGGCAGAAAAGGATGGATGCCGACTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731315" ref_strand="+" ref_description="SGN-E731315 [LA26DA11]">
      <seq>gctttggacactggttgtggggttgcaagttggggtgcttatctttggaaaaggaatgtcatagcaatgtcatttgccccaagagactcacatgaagctcaggttcagtttgctctggaaaggggtgtgcctgctgttattggtgtactaggaacaatcaaaatgccatatccatctaaagcctttgatatggcccattgttctcgttgtctaatcccatggggagctgctgatggaatcctcatgatggaagttgaccgagttcttagacctggaggctactgggtgctttctggacctcctatcaactggaaggtcaattttaaggcctggcaacgccccaaggaggatcttgaggaagaacaaaggaagattgaagaggctgctaaacttctttgctgggagaagatatctgagaagggagagactgctatttggcagaaaagaaaggatagtgcctcatgccgttctgcacaagaaaattctgcagccaaagtttgtaaaccttctgatccagatagtgtctggtacaacaaaatggaaatgtgcataacaccaaacaatggtaatggtggagacgagagtctaaagccattccctgagagactttatgctgttcctccaagaattgccaatggattagtttctggagtgtctgttgagaaatatcaagaagacagcaagaaatggaagaaacacgtaagtgcttataagaagatcaacaaactcctggacactggaaggtaccgcaacattatggacatgaatgctggactaggaggttttgcagcagcacttcccgatcccaagttttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="115425" stop="118245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115725" g_stop="115745" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115746" i_stop="115861" i_length="116">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115862" g_stop="116072" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="232" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116073" i_stop="116216" i_length="144">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116217" g_stop="116511" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="527" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116512" i_stop="117655" i_length="1144">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117656" g_stop="117945" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="817" r_length="290" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E731315" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115725" e_stop="115745"/>
          <exon e_start="115862" e_stop="116072"/>
          <exon e_start="116217" e_stop="116511"/>
          <exon e_start="117656" e_stop="117945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTGGACACTGGTTGTGGGGTATGTTTCCTGCTTCGTGAACTGTTTTCTTCTCTAAACACATGTGTCTTTGCTTACATGGGAAGTATTTGTTATTCTATTGCTGTTTTGGCTAAGAATTTCTCAAATTGTGCTAGGTTGCAAGTTGGGGTGCTTATCTTTGGAAAAGGAATGTCATAGCAATGTCATTTGCCCCAAGAGACTCACATGAAGCTCAGGTTCAGTTTGCTCTGGAAAGGGGTGTGCCTGCTGTTATTGGTGTACTAGGAACAATCAAAATGCCATATCCATCTAAAGCCTTTGATATGGCCCATTGTTCTCGTTGTCTAATCCCATGGGGAGCTGCTGGTATGTATCTCATGTTGATATCCAAAAAATGGTTAAATTTTTAAAATTAGAGAGGCATTGTACTTGTTTGTCTGTATGTTTTAGCTAATTATTTCTTTCTGATGATGGTTTTTTAATTGCATTAATTGTTCATTCGTCATGTAGATGGAATCCTCATGATGGAAGTTGACCGAGTTCTTAGACCTGGAGGCTACTGGGTGCTTTCTGGACCTCCTATCAACTGGAAGGTCAATTTTAAGGCCTGGCAACGCCCCAAGGAGGATCTTGAGGAAGAACAAAGGAAGATTGAAGAGGCTGCTAAACTTCTTTGCTGGGAGAAGATATCTGAGAAGGGAGAGACTGCTATTTGGCAGAAAAGAAAGGATAGTGCCTCATGCCGTTCTGCACAAGAAAATTCTGCAGCCAAAGTTTGTAAACCTTCTGATCCAGATAGTGTCTGGTATGTCATCATACTTAATAGTTCAATTGTATGTGTTGGAGGTTCTCATATCTTCTCTTGGGAAAATGAAAAAGGTGAATGTGCTTCATGCGTCTCTATTCCTATGAGTGGCAGCTCTATTCTACTGTGAAATAGGTTTCTTGAGGTGCTTTAGAAATAAATTAGATCATGCCACCAGTTAGAATTACTTGAACATGAGAAACTTGTTTCTTTAGATGAATAGCATGTCAAGAAGGTTCAGTATGCGAATTTGAATTGTCTAGGTGGCAGAAAACTCACTAAGTATGCAGGACAATCCATTTGCCATAATCTGATAAGGTAAATATCACATTGTTAACTTACTAAGCAAACTGCGTTATGGAAGTGGCTTAGTGCATGCTACAACTTATCTCAACTCTCCAAGCCAAGGCCCTTCCTAAAAAAAGCGAAAAGAAAAAGGATAGACTGAGGTTCTTTCATTACATTGGACATGTAACTGTCAGTTTAAAAATTTCTTTAATGATTTAAGCTGTATGTTAGAAGTAAGATTTTCCTTCATATTTAGTTACATCCTGGTTTGAACATAGAAGCAATTTAAATAACTTGTTCTGCACTTCAATCTTTTCTCCTGTTCTCTTATCAACAGTTCTGGTCATCTAATTATTCGACAGCCACTTCTGCTTATTAAGCCAGCTGAAATTGTTCATTTGATGCTTAGTTCTTGTTGAGCACAATATATTTACTACCACAGGAATGCATCAACTGATAGCTAATAGCACGATGAACAGCACTGTCCTGTTTTGATGACCATAAACAAGATAACCCTTGCTTCATTTTGTCCAAACTGGTTTCTGATAGAATTGAGTATTTTAACTGGTTTAATTTACAGCTTTTAGTTTTAGGATTTCCAGAGAATGTAAAGTAATTCACATTTTATCTATAAATGCCTTTTTTTGCTGAATGTGACAGTAGGATTGGTATTGTGTTTTGAATAATTCGATATTTTGCAGTAAGTGATACAACCCTGAAATTGGTTGTTGTATATTGAAATGCATGATTACTGTGTTTTGTTTGAGGCAGCTTCAGTGGTCTTGTTGTGTTCATATTGTATCAATATTGAAAACAAGCTCATGGCTGATCCATTATTTTTACCTTTTTGGTTCAGGTACAACAAAATGGAAATGTGCATAACACCAAACAATGGTAATGGTGGAGACGAGAGTCTAAAGCCATTCCCTGAGAGACTTTATGCTGTTCCTCCAAGAATTGCCAATGGATTAGTTTCTGGAGTGTCTGTTGAGAAATATCAAGAAGACAGCAAGAAATGGAAGAAACACGTAAGTGCTTATAAGAAGATCAACAAACTCCTGGACACTGGAAGGTACCGCAACATTATGGACATGAATGCTGGACTAGGAGGTTTTGCAGCAGCACTTCACGATCCCAAGTTTTGGG</genome_strand>
        <mrna_strand>GCTTTGGACACTGGTTGTGGG....................................................................................................................GTTGCAAGTTGGGGTGCTTATCTTTGGAAAAGGAATGTCATAGCAATGTCATTTGCCCCAAGAGACTCACATGAAGCTCAGGTTCAGTTTGCTCTGGAAAGGGGTGTGCCTGCTGTTATTGGTGTACTAGGAACAATCAAAATGCCATATCCATCTAAAGCCTTTGATATGGCCCATTGTTCTCGTTGTCTAATCCCATGGGGAGCTGCTG................................................................................................................................................ATGGAATCCTCATGATGGAAGTTGACCGAGTTCTTAGACCTGGAGGCTACTGGGTGCTTTCTGGACCTCCTATCAACTGGAAGGTCAATTTTAAGGCCTGGCAACGCCCCAAGGAGGATCTTGAGGAAGAACAAAGGAAGATTGAAGAGGCTGCTAAACTTCTTTGCTGGGAGAAGATATCTGAGAAGGGAGAGACTGCTATTTGGCAGAAAAGAAAGGATAGTGCCTCATGCCGTTCTGCACAAGAAAATTCTGCAGCCAAAGTTTGTAAACCTTCTGATCCAGATAGTGTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAACAAAATGGAAATGTGCATAACACCAAACAATGGTAATGGTGGAGACGAGAGTCTAAAGCCATTCCCTGAGAGACTTTATGCTGTTCCTCCAAGAATTGCCAATGGATTAGTTTCTGGAGTGTCTGTTGAGAAATATCAAGAAGACAGCAAGAAATGGAAGAAACACGTAAGTGCTTATAAGAAGATCAACAAACTCCTGGACACTGGAAGGTACCGCAACATTATGGACATGAATGCTGGACTAGGAGGTTTTGCAGCAGCACTTCCCGATCCCAAGTTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267734" ref_strand="+" ref_description="SGN-E267734 [cLEI-12-D9]">
      <seq>cagtttgctctggaaaggggtgtgcctgctgttattggtgtactaggaacaatcaaaatgccatatccatctaaagcctttgatatggcccattgttctcgttgtctaatcccatggggagctgctgatggaatcctcatgatggaagttgaccgagttcttagacctggaggctactgggtgctttctggacctcctatcaactggaaggtcaattttaaggcctggcaacgccccaaggaggatcttgaggaagaacaaaggaagattgaagaggctgctaaacttctttgctgggagaagatatctgagaagggagagactgctatttggcagaaaagaaaggatagtgcctcatgccgttctgcacaagaaaattctgcagccaaagtttgtaaaccttctgatccagatagtgtctggtacaacaaaatggaaatgtgcataacaccaaacaatggtaatggtggagacgagagtctaaagccattccctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="115646" stop="118031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115946" g_stop="116072" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116073" i_stop="116216" i_length="144">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116217" g_stop="116511" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="422" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116512" i_stop="117655" i_length="1144">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117656" g_stop="117731" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="498" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E267734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115946" e_stop="116072"/>
          <exon e_start="116217" e_stop="116511"/>
          <exon e_start="117656" e_stop="117731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTGCTCTGGAAAGGGGTGTGCCTGCTGTTATTGGTGTACTAGGAACAATCAAAATGCCATATCCATCTAAAGCCTTTGATATGGCCCATTGTTCTCGTTGTCTAATCCCATGGGGAGCTGCTGGTATGTATCTCATGTTGATATCCAAAAAATGGTTAAATTTTTAAAATTAGAGAGGCATTGTACTTGTTTGTCTGTATGTTTTAGCTAATTATTTCTTTCTGATGATGGTTTTTTAATTGCATTAATTGTTCATTCGTCATGTAGATGGAATCCTCATGATGGAAGTTGACCGAGTTCTTAGACCTGGAGGCTACTGGGTGCTTTCTGGACCTCCTATCAACTGGAAGGTCAATTTTAAGGCCTGGCAACGCCCCAAGGAGGATCTTGAGGAAGAACAAAGGAAGATTGAAGAGGCTGCTAAACTTCTTTGCTGGGAGAAGATATCTGAGAAGGGAGAGACTGCTATTTGGCAGAAAAGAAAGGATAGTGCCTCATGCCGTTCTGCACAAGAAAATTCTGCAGCCAAAGTTTGTAAACCTTCTGATCCAGATAGTGTCTGGTATGTCATCATACTTAATAGTTCAATTGTATGTGTTGGAGGTTCTCATATCTTCTCTTGGGAAAATGAAAAAGGTGAATGTGCTTCATGCGTCTCTATTCCTATGAGTGGCAGCTCTATTCTACTGTGAAATAGGTTTCTTGAGGTGCTTTAGAAATAAATTAGATCATGCCACCAGTTAGAATTACTTGAACATGAGAAACTTGTTTCTTTAGATGAATAGCATGTCAAGAAGGTTCAGTATGCGAATTTGAATTGTCTAGGTGGCAGAAAACTCACTAAGTATGCAGGACAATCCATTTGCCATAATCTGATAAGGTAAATATCACATTGTTAACTTACTAAGCAAACTGCGTTATGGAAGTGGCTTAGTGCATGCTACAACTTATCTCAACTCTCCAAGCCAAGGCCCTTCCTAAAAAAAGCGAAAAGAAAAAGGATAGACTGAGGTTCTTTCATTACATTGGACATGTAACTGTCAGTTTAAAAATTTCTTTAATGATTTAAGCTGTATGTTAGAAGTAAGATTTTCCTTCATATTTAGTTACATCCTGGTTTGAACATAGAAGCAATTTAAATAACTTGTTCTGCACTTCAATCTTTTCTCCTGTTCTCTTATCAACAGTTCTGGTCATCTAATTATTCGACAGCCACTTCTGCTTATTAAGCCAGCTGAAATTGTTCATTTGATGCTTAGTTCTTGTTGAGCACAATATATTTACTACCACAGGAATGCATCAACTGATAGCTAATAGCACGATGAACAGCACTGTCCTGTTTTGATGACCATAAACAAGATAACCCTTGCTTCATTTTGTCCAAACTGGTTTCTGATAGAATTGAGTATTTTAACTGGTTTAATTTACAGCTTTTAGTTTTAGGATTTCCAGAGAATGTAAAGTAATTCACATTTTATCTATAAATGCCTTTTTTTGCTGAATGTGACAGTAGGATTGGTATTGTGTTTTGAATAATTCGATATTTTGCAGTAAGTGATACAACCCTGAAATTGGTTGTTGTATATTGAAATGCATGATTACTGTGTTTTGTTTGAGGCAGCTTCAGTGGTCTTGTTGTGTTCATATTGTATCAATATTGAAAACAAGCTCATGGCTGATCCATTATTTTTACCTTTTTGGTTCAGGTACAACAAAATGGAAATGTGCATAACACCAAACAATGGTAATGGTGGAGACGAGAGTCTAAAGCCATTCCCTGAG</genome_strand>
        <mrna_strand>CAGTTTGCTCTGGAAAGGGGTGTGCCTGCTGTTATTGGTGTACTAGGAACAATCAAAATGCCATATCCATCTAAAGCCTTTGATATGGCCCATTGTTCTCGTTGTCTAATCCCATGGGGAGCTGCTG................................................................................................................................................ATGGAATCCTCATGATGGAAGTTGACCGAGTTCTTAGACCTGGAGGCTACTGGGTGCTTTCTGGACCTCCTATCAACTGGAAGGTCAATTTTAAGGCCTGGCAACGCCCCAAGGAGGATCTTGAGGAAGAACAAAGGAAGATTGAAGAGGCTGCTAAACTTCTTTGCTGGGAGAAGATATCTGAGAAGGGAGAGACTGCTATTTGGCAGAAAAGAAAGGATAGTGCCTCATGCCGTTCTGCACAAGAAAATTCTGCAGCCAAAGTTTGTAAACCTTCTGATCCAGATAGTGTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAACAAAATGGAAATGTGCATAACACCAAACAATGGTAATGGTGGAGACGAGAGTCTAAAGCCATTCCCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341391" ref_strand="+" ref_description="SGN-E341391 [cTOE-23-O22]">
      <seq>cctgctgttattggtgtactacgaacaatcaaaattccttatacatctaaagcctntgatatggccgagggctctcgttgtctaatcccatggggagctgctgatggaatcctcatgatggaagttgaccgagttcttatacctggaggctactgggtgctttctggacctcctatcaactggaaggtcaattttaaggcctggcaacgccccaaggaggatcttgaggaagaacaaaggaagattgaagaggctgctaaacttctttgctgggagaagatatctgagaagggagagactgctatttggcagaaaagaaaggatagtgcctcatgccgttctgcacaagaaaattctgcagccaaagtttgtaaaccttctgatccagatagtgtctggtacaacaaaatggaaatgtgcataacaccaaacaatggtaatggtggagacgagagtctaaagccattccctgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="115670" stop="118033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115970" g_stop="116072" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116073" i_stop="116216" i_length="144">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116217" g_stop="116511" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="398" r_length="295" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116512" i_stop="117655" i_length="1144">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117656" g_stop="117733" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="476" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E341391" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115970" e_stop="116072"/>
          <exon e_start="116217" e_stop="116511"/>
          <exon e_start="117656" e_stop="117733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCTGTTATTGGTGTACTAGGAACAATCAAAATGCCATATCCATCTAAAGCCTTTGATATGGCCCATTGTTCTCGTTGTCTAATCCCATGGGGAGCTGCTGGTATGTATCTCATGTTGATATCCAAAAAATGGTTAAATTTTTAAAATTAGAGAGGCATTGTACTTGTTTGTCTGTATGTTTTAGCTAATTATTTCTTTCTGATGATGGTTTTTTAATTGCATTAATTGTTCATTCGTCATGTAGATGGAATCCTCATGATGGAAGTTGACCGAGTTCTTAGACCTGGAGGCTACTGGGTGCTTTCTGGACCTCCTATCAACTGGAAGGTCAATTTTAAGGCCTGGCAACGCCCCAAGGAGGATCTTGAGGAAGAACAAAGGAAGATTGAAGAGGCTGCTAAACTTCTTTGCTGGGAGAAGATATCTGAGAAGGGAGAGACTGCTATTTGGCAGAAAAGAAAGGATAGTGCCTCATGCCGTTCTGCACAAGAAAATTCTGCAGCCAAAGTTTGTAAACCTTCTGATCCAGATAGTGTCTGGTATGTCATCATACTTAATAGTTCAATTGTATGTGTTGGAGGTTCTCATATCTTCTCTTGGGAAAATGAAAAAGGTGAATGTGCTTCATGCGTCTCTATTCCTATGAGTGGCAGCTCTATTCTACTGTGAAATAGGTTTCTTGAGGTGCTTTAGAAATAAATTAGATCATGCCACCAGTTAGAATTACTTGAACATGAGAAACTTGTTTCTTTAGATGAATAGCATGTCAAGAAGGTTCAGTATGCGAATTTGAATTGTCTAGGTGGCAGAAAACTCACTAAGTATGCAGGACAATCCATTTGCCATAATCTGATAAGGTAAATATCACATTGTTAACTTACTAAGCAAACTGCGTTATGGAAGTGGCTTAGTGCATGCTACAACTTATCTCAACTCTCCAAGCCAAGGCCCTTCCTAAAAAAAGCGAAAAGAAAAAGGATAGACTGAGGTTCTTTCATTACATTGGACATGTAACTGTCAGTTTAAAAATTTCTTTAATGATTTAAGCTGTATGTTAGAAGTAAGATTTTCCTTCATATTTAGTTACATCCTGGTTTGAACATAGAAGCAATTTAAATAACTTGTTCTGCACTTCAATCTTTTCTCCTGTTCTCTTATCAACAGTTCTGGTCATCTAATTATTCGACAGCCACTTCTGCTTATTAAGCCAGCTGAAATTGTTCATTTGATGCTTAGTTCTTGTTGAGCACAATATATTTACTACCACAGGAATGCATCAACTGATAGCTAATAGCACGATGAACAGCACTGTCCTGTTTTGATGACCATAAACAAGATAACCCTTGCTTCATTTTGTCCAAACTGGTTTCTGATAGAATTGAGTATTTTAACTGGTTTAATTTACAGCTTTTAGTTTTAGGATTTCCAGAGAATGTAAAGTAATTCACATTTTATCTATAAATGCCTTTTTTTGCTGAATGTGACAGTAGGATTGGTATTGTGTTTTGAATAATTCGATATTTTGCAGTAAGTGATACAACCCTGAAATTGGTTGTTGTATATTGAAATGCATGATTACTGTGTTTTGTTTGAGGCAGCTTCAGTGGTCTTGTTGTGTTCATATTGTATCAATATTGAAAACAAGCTCATGGCTGATCCATTATTTTTACCTTTTTGGTTCAGGTACAACAAAATGGAAATGTGCATAACACCAAACAATGGTAATGGTGGAGACGAGAGTCTAAAGCCATTCCCTGAGAG</genome_strand>
        <mrna_strand>CCTGCTGTTATTGGTGTACTACGAACAATCAAAATTCCTTATACATCTAAAGCCTNTGATATGGCCGAGGGCTCTCGTTGTCTAATCCCATGGGGAGCTGCTG................................................................................................................................................ATGGAATCCTCATGATGGAAGTTGACCGAGTTCTTATACCTGGAGGCTACTGGGTGCTTTCTGGACCTCCTATCAACTGGAAGGTCAATTTTAAGGCCTGGCAACGCCCCAAGGAGGATCTTGAGGAAGAACAAAGGAAGATTGAAGAGGCTGCTAAACTTCTTTGCTGGGAGAAGATATCTGAGAAGGGAGAGACTGCTATTTGGCAGAAAAGAAAGGATAGTGCCTCATGCCGTTCTGCACAAGAAAATTCTGCAGCCAAAGTTTGTAAACCTTCTGATCCAGATAGTGTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAACAAAATGGAAATGTGCATAACACCAAACAATGGTAATGGTGGAGACGAGAGTCTAAAGCCATTCCCTGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577673" ref_strand="-" ref_description="SGN-E577673 [LE15BF08]">
      <seq>ggttatgaatgttatgccaacaatagctgagaagaatactttgggagttgtattcgaacggggactgattggtatctatcatgactggtgtgaagcattttctacatacccaaggacatatgatctcattcatgctaatggccttttcagtttatataaggacaagtgtgactttcaagacattctcttagagatggaccgtattttgcgtccagaaggagctgtcattctaagagacaatgtagatgtactgatcaaggtgaagaagataataggaggcatgaggtggaacttcaaattgatggatcatgaggacggtccccttgttcccgaaaaaatactggttgctgtcaaacaatattggactctgggtgataccaactccacatcctcacaatgagatgccaccgaagatgttgtctgaccatatgaactcgtatggatcaggaagaccaacatcttatgaatacaaaatccatggttatgcaagacgtttcacccctaggaattttgatcgagcagggtcccttgacaggtgactccacggcacatctttagtcttgatggatccataaattataccagatgatttagcgtttataactgtcttcattttcttctctgttccatgtctcgttagataatgactctaaaaactgagctacatgggattattatgaagctttttgaaagtcctttataaacatttcttccctcgatatatagactctgtaatgtgttgtttaattaaagtggaaatttgatctagttgatttctgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="117644" stop="120388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117944" g_stop="118030" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118031" i_stop="118850" i_length="820">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118851" g_stop="118928" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="165" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118929" i_stop="119466" i_length="538">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119467" g_stop="120080" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="779" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="780" polyA_stop="800"/>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E577673" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577673" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="117944" e_stop="118030"/>
          <exon e_start="118851" e_stop="118928"/>
          <exon e_start="119467" e_stop="120080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTATGAATGTTATGCCAACAATAGCTGAGAAGAATACTTTGGGAGTTGTATTCGAACGGGGACTGATTGGTATCTATCATGACTGGTACGTACTAATAGGGTATGAATGATCTATAGTTCTGATATTGAGATGATGATGTAGTTATTGGTGTCTCCTTATAATCTATCTTTTTAGGAATTACTCTCGTTGTCTCCCTCATAATCTGACTTTTTAGGAATTCAGTCCGTGTTTACTCTTGTCATGCAATTCCAGTCTCTGTTTACTGGTGGTCCTTCTCTTTCTTCAAAATTTTCATTATAGCTTTTTACTCTTGCATTTCTTTCAGACTGATTCTGAAAAATGTTTTTCTTGAGACAAAGGGTCTATCAAAAACAGTCTTTCTACCCCACAAAGGTCTGAATACACCCCACCCTCCCCACACCCCACTTGTGGGACTCTACTGGGTATGTTGTTATTGTTGATTTAACAGACATAGGACCATATGATAGAAACTCTCCTTTCCCCTGGTTCAATGTGTTTTGTTTACATGCTGGAGCTAAGATCAAGACTTTCACCCTAGTAAATGTCTAAATTTGTTAAAAATAGATGACTATGTCATTTCGTTTTTGACGAAATTCTCTATTATGAGTCCATGAAAATGTTTCACAAATGCACCTAAGATCCATATATACAAAAGTAATTTTCTCATTTGTTTCTATCAAAACGTACTCATGCTTTATTAAAATAGCAAAAAGGATGTCAAGAAAATGCAGTATGCTGTTTGAGAAAATAGCGTGTATCAAATTTATCTTTTTTTTTGTTCACAAGGAAGATACTAGTGTTATGTTTTACTTTATTTCTATTTATTCTCTTCCTTATGTAAGAGAAAGCTATCCTCTGATCATATAGTTATCTTCTGATTCAGGTGTGAAGCATTTTCTACATACCCAAGGACATATGATCTCATTCATGCTAATGGCCTTTTCAGTTTATATAAGGACAAGTAAGTTTTTATCTTCGCTATTTATTTATATTGCTAATTTACTTAGTATGTTCTTCATTTAGATAAAGAGCTTAATAGCACGGTGGTATTGCAGCTCCTTTATTGAAGGTCCTATTGTTGGCCGTGCCTAGTTGCTAATTAAGTAAAAAGGTCTAAATAATTGTGATATGATAAGAGCAAAGGTAGCTTAAGTAAATATACACTGATAGTAGATGATCATACACTTAAAATTTTAGGATAGTAACCTTCTCAGTATATGGTATAATGACTGATATTTGAAGTACCGACAGAAGTTTGCGTGTGTTGTGGCTAAATCCACCATCATTTCTCCTTTTTGCTGCTGTGACTTAATATGCTGTTATTCGTAACTGCACTGTTCTTGTTGAAATAGAAATGCCAGCTCGTCACTCTGGCAACTCATATCTCCCCCGTCTACTGATCCCCAGCCAGGAAAAGAAAAAAATACCCAGTTAAAGGGTGCTACAGGAAGAAAAATAATTGGTATCATTGACTAAATTAGCATTTTCTAATTTTATAGGTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGAACTTCAAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTCAAACAATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCATATGAACTCGTATGGATCAGGAAGACCAACATCTTATGAATACAAAATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGAAGCTTTTTGAAAGTCCTTTATAAACATTTCTTCCCTCGATATATAGACTCTGTAATGTGTTGTTTAATTAAAGTGGAAATTTGATCTAGTTGATTTCTG</genome_strand>
        <mrna_strand>GGTTATGAATGTTATGCCAACAATAGCTGAGAAGAATACTTTGGGAGTTGTATTCGAACGGGGACTGATTGGTATCTATCATGACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGCATTTTCTACATACCCAAGGACATATGATCTCATTCATGCTAATGGCCTTTTCAGTTTATATAAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGAACTTCAAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTCAAACAATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCATATGAACTCGTATGGATCAGGAAGACCAACATCTTATGAATACAAAATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGAAGCTTTTTGAAAGTCCTTTATAAACATTTCTTCCCTCGATATATAGACTCTGTAATGTGTTGTTTAATTAAAGTGGAAATTTGATCTAGTTGATTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291445" ref_strand="+" ref_description="SGN-E291445 [cLET-2-C20]">
      <seq>tggtatctatcatgactggtgtgaagcattttctacatacccaaggacatatgatctcattcatgctaatggccttttcagtttatataaggacaagtgtgactttcaagacattctcttagagatggaccgtattttgcgtccagaaggagctgtcattctaagagacaatgtagatgtactgatcaaggtgaagaagataataggaggcatgaggtggaacttcaaattgatggatcatgaggacggtccccttgttcccgaaaaaatactggttgctgtcaaacaatattggactctgggtgataccaactccacatcctcacaatgagatgccaccgaagatgttgtctgaccatatgaactcgtatggatcaggaagaccaacatcttatgaatacaaaatccatggttatgcaagacgtttcacccctaggaattttgatcgagcagggtcccttgacaggtgactccacggcacatctttagtcttgatggatccataaattataccagatgatttagcgtttataactgtcttcattttcttctctgttccatgtctcgntagataatgactctaaaaactgagctacatgggattattatgaagcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="117713" stop="120289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118013" g_stop="118030" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118031" i_stop="118850" i_length="820">
            <donor d_prob="0.960" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118851" g_stop="118928" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="96" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118929" i_stop="119466" i_length="538">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119467" g_stop="119989" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="619" r_length="523" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E291445" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118013" e_stop="118030"/>
          <exon e_start="118851" e_stop="118928"/>
          <exon e_start="119467" e_stop="119989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATCTATCATGACTGGTACGTACTAATAGGGTATGAATGATCTATAGTTCTGATATTGAGATGATGATGTAGTTATTGGTGTCTCCTTATAATCTATCTTTTTAGGAATTACTCTCGTTGTCTCCCTCATAATCTGACTTTTTAGGAATTCAGTCCGTGTTTACTCTTGTCATGCAATTCCAGTCTCTGTTTACTGGTGGTCCTTCTCTTTCTTCAAAATTTTCATTATAGCTTTTTACTCTTGCATTTCTTTCAGACTGATTCTGAAAAATGTTTTTCTTGAGACAAAGGGTCTATCAAAAACAGTCTTTCTACCCCACAAAGGTCTGAATACACCCCACCCTCCCCACACCCCACTTGTGGGACTCTACTGGGTATGTTGTTATTGTTGATTTAACAGACATAGGACCATATGATAGAAACTCTCCTTTCCCCTGGTTCAATGTGTTTTGTTTACATGCTGGAGCTAAGATCAAGACTTTCACCCTAGTAAATGTCTAAATTTGTTAAAAATAGATGACTATGTCATTTCGTTTTTGACGAAATTCTCTATTATGAGTCCATGAAAATGTTTCACAAATGCACCTAAGATCCATATATACAAAAGTAATTTTCTCATTTGTTTCTATCAAAACGTACTCATGCTTTATTAAAATAGCAAAAAGGATGTCAAGAAAATGCAGTATGCTGTTTGAGAAAATAGCGTGTATCAAATTTATCTTTTTTTTTGTTCACAAGGAAGATACTAGTGTTATGTTTTACTTTATTTCTATTTATTCTCTTCCTTATGTAAGAGAAAGCTATCCTCTGATCATATAGTTATCTTCTGATTCAGGTGTGAAGCATTTTCTACATACCCAAGGACATATGATCTCATTCATGCTAATGGCCTTTTCAGTTTATATAAGGACAAGTAAGTTTTTATCTTCGCTATTTATTTATATTGCTAATTTACTTAGTATGTTCTTCATTTAGATAAAGAGCTTAATAGCACGGTGGTATTGCAGCTCCTTTATTGAAGGTCCTATTGTTGGCCGTGCCTAGTTGCTAATTAAGTAAAAAGGTCTAAATAATTGTGATATGATAAGAGCAAAGGTAGCTTAAGTAAATATACACTGATAGTAGATGATCATACACTTAAAATTTTAGGATAGTAACCTTCTCAGTATATGGTATAATGACTGATATTTGAAGTACCGACAGAAGTTTGCGTGTGTTGTGGCTAAATCCACCATCATTTCTCCTTTTTGCTGCTGTGACTTAATATGCTGTTATTCGTAACTGCACTGTTCTTGTTGAAATAGAAATGCCAGCTCGTCACTCTGGCAACTCATATCTCCCCCGTCTACTGATCCCCAGCCAGGAAAAGAAAAAAATACCCAGTTAAAGGGTGCTACAGGAAGAAAAATAATTGGTATCATTGACTAAATTAGCATTTTCTAATTTTATAGGTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGAACTTCAAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTCAAACAATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCATATGAACTCGTATGGATCAGGAAGACCAACATCTTATGAATACAAAATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGAAGCTTTTT</genome_strand>
        <mrna_strand>TGGTATCTATCATGACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGCATTTTCTACATACCCAAGGACATATGATCTCATTCATGCTAATGGCCTTTTCAGTTTATATAAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGAACTTCAAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTCAAACAATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCATATGAACTCGTATGGATCAGGAAGACCAACATCTTATGAATACAAAATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGNTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGAAGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295546" ref_strand="+" ref_description="SGN-E295546 [cLET-23-J21]">
      <seq>tggtatctatcatgactggtgtgaagcattttctacatacccaaggacatatgatctcattcatgctaatggccttttcagtttatataaggacaagtgtgactttcaagacattctcttagagatggaccgtattttgcgtccagaaggagctgtcattctaagagacaatgtagatgtactgatcaaggtgaagaagataataggaggcatgaggtggaacttcaaattgatggatcatgaggacggtccccttgttcccgaaaaaatactggttgctgtcaaacaatattggactctgggtgataccaactccacatcctcacaatgagatgccaccgaagatgttgtctgaccatatgaactcgtatggatcatgaagaccaacatcttatgaatacaaaatccatggttatgcaagacgtttcacccctaggaatattgatcgagcagggtcccttgacaggtgactgcacggcacatctttagtcttgatggatccataaattatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="117713" stop="120183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118013" g_stop="118030" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118031" i_stop="118850" i_length="820">
            <donor d_prob="0.960" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118851" g_stop="118928" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="96" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118929" i_stop="119466" i_length="538">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119467" g_stop="119883" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="513" r_length="417" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E295546" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118013" e_stop="118030"/>
          <exon e_start="118851" e_stop="118928"/>
          <exon e_start="119467" e_stop="119883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATCTATCATGACTGGTACGTACTAATAGGGTATGAATGATCTATAGTTCTGATATTGAGATGATGATGTAGTTATTGGTGTCTCCTTATAATCTATCTTTTTAGGAATTACTCTCGTTGTCTCCCTCATAATCTGACTTTTTAGGAATTCAGTCCGTGTTTACTCTTGTCATGCAATTCCAGTCTCTGTTTACTGGTGGTCCTTCTCTTTCTTCAAAATTTTCATTATAGCTTTTTACTCTTGCATTTCTTTCAGACTGATTCTGAAAAATGTTTTTCTTGAGACAAAGGGTCTATCAAAAACAGTCTTTCTACCCCACAAAGGTCTGAATACACCCCACCCTCCCCACACCCCACTTGTGGGACTCTACTGGGTATGTTGTTATTGTTGATTTAACAGACATAGGACCATATGATAGAAACTCTCCTTTCCCCTGGTTCAATGTGTTTTGTTTACATGCTGGAGCTAAGATCAAGACTTTCACCCTAGTAAATGTCTAAATTTGTTAAAAATAGATGACTATGTCATTTCGTTTTTGACGAAATTCTCTATTATGAGTCCATGAAAATGTTTCACAAATGCACCTAAGATCCATATATACAAAAGTAATTTTCTCATTTGTTTCTATCAAAACGTACTCATGCTTTATTAAAATAGCAAAAAGGATGTCAAGAAAATGCAGTATGCTGTTTGAGAAAATAGCGTGTATCAAATTTATCTTTTTTTTTGTTCACAAGGAAGATACTAGTGTTATGTTTTACTTTATTTCTATTTATTCTCTTCCTTATGTAAGAGAAAGCTATCCTCTGATCATATAGTTATCTTCTGATTCAGGTGTGAAGCATTTTCTACATACCCAAGGACATATGATCTCATTCATGCTAATGGCCTTTTCAGTTTATATAAGGACAAGTAAGTTTTTATCTTCGCTATTTATTTATATTGCTAATTTACTTAGTATGTTCTTCATTTAGATAAAGAGCTTAATAGCACGGTGGTATTGCAGCTCCTTTATTGAAGGTCCTATTGTTGGCCGTGCCTAGTTGCTAATTAAGTAAAAAGGTCTAAATAATTGTGATATGATAAGAGCAAAGGTAGCTTAAGTAAATATACACTGATAGTAGATGATCATACACTTAAAATTTTAGGATAGTAACCTTCTCAGTATATGGTATAATGACTGATATTTGAAGTACCGACAGAAGTTTGCGTGTGTTGTGGCTAAATCCACCATCATTTCTCCTTTTTGCTGCTGTGACTTAATATGCTGTTATTCGTAACTGCACTGTTCTTGTTGAAATAGAAATGCCAGCTCGTCACTCTGGCAACTCATATCTCCCCCGTCTACTGATCCCCAGCCAGGAAAAGAAAAAAATACCCAGTTAAAGGGTGCTACAGGAAGAAAAATAATTGGTATCATTGACTAAATTAGCATTTTCTAATTTTATAGGTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGAACTTCAAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTCAAACAATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCATATGAACTCGTATGGATCAGGAAGACCAACATCTTATGAATACAAAATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATAC</genome_strand>
        <mrna_strand>TGGTATCTATCATGACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGCATTTTCTACATACCCAAGGACATATGATCTCATTCATGCTAATGGCCTTTTCAGTTTATATAAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGAACTTCAAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTCAAACAATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCATATGAACTCGTATGGATCATGAAGACCAACATCTTATGAATACAAAATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATATTGATCGAGCAGGGTCCCTTGACAGGTGACTGCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389465" ref_strand="+" ref_description="SGN-E389465 [TUS-4-B21]">
      <seq>tggtattgcagctcctttattgaaggtcctattgttggccgtgcctagttgctaattaagtaaaaaggtctaaataattgtgatatgataagagcaaaggtagcttaagtaaatatacactgatagtagatgatcatacacttaaaattttaggatagtaaccttctcagtatatggtataatgactgatatttgaagtaccgacagaagtttgcgtgtgttgtggctaaatccaccatcatttctcctttttgctgctgtgacttaatatgctgttattcgtaactgcactgttcttgttgaaatagaaatgccagctcgtcactctggcaactcatatctcccccgtctactgatccccagccaggaaaagaaaaaaatacccagttaaagggtgctacaggaagaaaaataattggtatcattgactaaattagcattttctaattttataggtgtgactttcaagacattctcttagagatggaccgtattttgcgtccagaaggagctgtcattctaagagacaatgtagatgtactgatcaaggtgaagaagataataggaggcatgaggtggaacttcaaattgatggatcatgaggacggtccccttgttcccgaaaaaatactggttgctgtcaaacatattggactctgggtgataccaactccacatcctcacaatgagatgccaccgaagatgttgtctgaccatatgaactcgtatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="118712" stop="120044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119012" g_stop="119744" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E389465" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119012" e_stop="119744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATTGCAGCTCCTTTATTGAAGGTCCTATTGTTGGCCGTGCCTAGTTGCTAATTAAGTAAAAAGGTCTAAATAATTGTGATATGATAAGAGCAAAGGTAGCTTAAGTAAATATACACTGATAGTAGATGATCATACACTTAAAATTTTAGGATAGTAACCTTCTCAGTATATGGTATAATGACTGATATTTGAAGTACCGACAGAAGTTTGCGTGTGTTGTGGCTAAATCCACCATCATTTCTCCTTTTTGCTGCTGTGACTTAATATGCTGTTATTCGTAACTGCACTGTTCTTGTTGAAATAGAAATGCCAGCTCGTCACTCTGGCAACTCATATCTCCCCCGTCTACTGATCCCCAGCCAGGAAAAGAAAAAAATACCCAGTTAAAGGGTGCTACAGGAAGAAAAATAATTGGTATCATTGACTAAATTAGCATTTTCTAATTTTATAGGTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGAACTTCAAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTCAAACAATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCATATGAACTCGTATGGA</genome_strand>
        <mrna_strand>TGGTATTGCAGCTCCTTTATTGAAGGTCCTATTGTTGGCCGTGCCTAGTTGCTAATTAAGTAAAAAGGTCTAAATAATTGTGATATGATAAGAGCAAAGGTAGCTTAAGTAAATATACACTGATAGTAGATGATCATACACTTAAAATTTTAGGATAGTAACCTTCTCAGTATATGGTATAATGACTGATATTTGAAGTACCGACAGAAGTTTGCGTGTGTTGTGGCTAAATCCACCATCATTTCTCCTTTTTGCTGCTGTGACTTAATATGCTGTTATTCGTAACTGCACTGTTCTTGTTGAAATAGAAATGCCAGCTCGTCACTCTGGCAACTCATATCTCCCCCGTCTACTGATCCCCAGCCAGGAAAAGAAAAAAATACCCAGTTAAAGGGTGCTACAGGAAGAAAAATAATTGGTATCATTGACTAAATTAGCATTTTCTAATTTTATAGGTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGAACTTCAAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTCAAAC-ATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCATATGAACTCGTATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550293" ref_strand="+" ref_description="SGN-E550293 [TUS-5-B33]">
      <seq>tggtattgcagctcctttattgaaggtcctattgttggccgtgcctagttgctaattaagtaaaaaggtctaaataattgtgatatgataagagcaaaggtagcttaagtaaatatacactgatagtagatgatcatacacttaaaattttaggatagtaaccttctcagtatatggtataatgactgatatttgaagtaccgacagaagtttgcgtgtgttgtggctaaatccaccatcatttctcctttttgctgctgtgacttaatatgctgttattcgtaactgcactgttcttgttgaaatagaaatgccagctcgtcactctggcaactcatatctcccccgtctactgatccccagccaggaaaagaaaaaaatacccagttaaagggtgctacaggaagaaaaataattggtatcattgactaaattagcattttctaattttataggtgtgactttcaagacattctcttagagatggaccgtattttgcgtccagaaggagctgtcattctaagagacaatgtagatgtactgatcaaggtgaagaagataataggaggcatgaggtgggacttncaattgatggatcatgaggacggtccccttgttcccgaaaaaatactggttgctgtncaacnatattggactctgggtgataccaactccacatcctcacaatgagatgccaccgaagatgttgtctgaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="118712" stop="120029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119012" g_stop="119729" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E550293" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119012" e_stop="119729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATTGCAGCTCCTTTATTGAAGGTCCTATTGTTGGCCGTGCCTAGTTGCTAATTAAGTAAAAAGGTCTAAATAATTGTGATATGATAAGAGCAAAGGTAGCTTAAGTAAATATACACTGATAGTAGATGATCATACACTTAAAATTTTAGGATAGTAACCTTCTCAGTATATGGTATAATGACTGATATTTGAAGTACCGACAGAAGTTTGCGTGTGTTGTGGCTAAATCCACCATCATTTCTCCTTTTTGCTGCTGTGACTTAATATGCTGTTATTCGTAACTGCACTGTTCTTGTTGAAATAGAAATGCCAGCTCGTCACTCTGGCAACTCATATCTCCCCCGTCTACTGATCCCCAGCCAGGAAAAGAAAAAAATACCCAGTTAAAGGGTGCTACAGGAAGAAAAATAATTGGTATCATTGACTAAATTAGCATTTTCTAATTTTATAGGTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGAACTTCAAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTCAAACAATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCAT</genome_strand>
        <mrna_strand>TGGTATTGCAGCTCCTTTATTGAAGGTCCTATTGTTGGCCGTGCCTAGTTGCTAATTAAGTAAAAAGGTCTAAATAATTGTGATATGATAAGAGCAAAGGTAGCTTAAGTAAATATACACTGATAGTAGATGATCATACACTTAAAATTTTAGGATAGTAACCTTCTCAGTATATGGTATAATGACTGATATTTGAAGTACCGACAGAAGTTTGCGTGTGTTGTGGCTAAATCCACCATCATTTCTCCTTTTTGCTGCTGTGACTTAATATGCTGTTATTCGTAACTGCACTGTTCTTGTTGAAATAGAAATGCCAGCTCGTCACTCTGGCAACTCATATCTCCCCCGTCTACTGATCCCCAGCCAGGAAAAGAAAAAAATACCCAGTTAAAGGGTGCTACAGGAAGAAAAATAATTGGTATCATTGACTAAATTAGCATTTTCTAATTTTATAGGTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGGACTTNCAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTNCAACNATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377471" ref_strand="+" ref_description="SGN-E377471 [TUS-20-F19]">
      <seq>ggtattgcagctcctttattgaaggtcctattgttggccgtgcctagttgctaattaagtaaaaaggtctaaataattgtgatatgataagagcaaaggtagcttaagtaaatatacactgatagtagatgatcatacacttaaaattttaggatagtaaccttctcagtatatggtataatgactgatatttgaagtaccgacagaagtttgcgtgtgttgtggctaaatccaccatcatttctcctttttgctgctgtgacttaatatgctgttattcgtaactgcactgttcttgttgaaatagaaatgccagctcgtcactctggcaactcatatctcccccgtctactgatccccagccaggaaaagaaaaaaatacccagttaaagggtgctacaggaagaaaaataattggtatcattgactaaattagcattttctaattttataggtgtgactttcaagacattctcttagagatggaccgtattttgcgtccagaaggagctgtcattctaagagacaatgtagatgtactgatcaaggtgaagaagataataggaggcatgaggtggaacttcaaattgatggatcatgaggacggtccccttgttcccgaaaaaatactggttgctgtcaaacaatattggactctgggtgataccaactccacatcctcacaatgagatgccaccgaagatgttgtctgaccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="118713" stop="120030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119013" g_stop="119730" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E377471" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119013" e_stop="119730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATTGCAGCTCCTTTATTGAAGGTCCTATTGTTGGCCGTGCCTAGTTGCTAATTAAGTAAAAAGGTCTAAATAATTGTGATATGATAAGAGCAAAGGTAGCTTAAGTAAATATACACTGATAGTAGATGATCATACACTTAAAATTTTAGGATAGTAACCTTCTCAGTATATGGTATAATGACTGATATTTGAAGTACCGACAGAAGTTTGCGTGTGTTGTGGCTAAATCCACCATCATTTCTCCTTTTTGCTGCTGTGACTTAATATGCTGTTATTCGTAACTGCACTGTTCTTGTTGAAATAGAAATGCCAGCTCGTCACTCTGGCAACTCATATCTCCCCCGTCTACTGATCCCCAGCCAGGAAAAGAAAAAAATACCCAGTTAAAGGGTGCTACAGGAAGAAAAATAATTGGTATCATTGACTAAATTAGCATTTTCTAATTTTATAGGTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGAACTTCAAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTCAAACAATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCATA</genome_strand>
        <mrna_strand>GGTATTGCAGCTCCTTTATTGAAGGTCCTATTGTTGGCCGTGCCTAGTTGCTAATTAAGTAAAAAGGTCTAAATAATTGTGATATGATAAGAGCAAAGGTAGCTTAAGTAAATATACACTGATAGTAGATGATCATACACTTAAAATTTTAGGATAGTAACCTTCTCAGTATATGGTATAATGACTGATATTTGAAGTACCGACAGAAGTTTGCGTGTGTTGTGGCTAAATCCACCATCATTTCTCCTTTTTGCTGCTGTGACTTAATATGCTGTTATTCGTAACTGCACTGTTCTTGTTGAAATAGAAATGCCAGCTCGTCACTCTGGCAACTCATATCTCCCCCGTCTACTGATCCCCAGCCAGGAAAAGAAAAAAATACCCAGTTAAAGGGTGCTACAGGAAGAAAAATAATTGGTATCATTGACTAAATTAGCATTTTCTAATTTTATAGGTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGAACTTCAAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTCAAACAATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233043" ref_strand="+" ref_description="SGN-E233043 [cLED-6-K5]">
      <seq>ggtattgcagctcctttattgaaggtcctattgttggccgtgcctagttgctaattaagtaaaaaggtctaaataattgtgatatgataagagcaaaggtagcttaagtaaatatacactgatagtagatgatcatacacttaaaattttaggatagtaaccttctcagtatatggtataatgactgatatttgaagtaccgacagaagtttgcgtgtgttgtggctaaatccaccatcatttctcctttttgctgctgtgacttaatatgctgttattcgtaactgcactgttcttgttgaaatagaaatgccagctcgtcactctggcaactcatatctcccccgtctactgatccccagccaggaaaagaaaaaaatacccagttaaagggtgctacaggaagaaaaataattggtatcattgactaaattagcattttctaattttataggtgtgactttcaagacattctcttagagatggaccgtatnttgcgtccagaaggagctgtcattctaagagacaatgtagatgtactgatcaaggtgaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="118713" stop="119869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119013" g_stop="119569" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E233043" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119013" e_stop="119569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATTGCAGCTCCTTTATTGAAGGTCCTATTGTTGGCCGTGCCTAGTTGCTAATTAAGTAAAAAGGTCTAAATAATTGTGATATGATAAGAGCAAAGGTAGCTTAAGTAAATATACACTGATAGTAGATGATCATACACTTAAAATTTTAGGATAGTAACCTTCTCAGTATATGGTATAATGACTGATATTTGAAGTACCGACAGAAGTTTGCGTGTGTTGTGGCTAAATCCACCATCATTTCTCCTTTTTGCTGCTGTGACTTAATATGCTGTTATTCGTAACTGCACTGTTCTTGTTGAAATAGAAATGCCAGCTCGTCACTCTGGCAACTCATATCTCCCCCGTCTACTGATCCCCAGCCAGGAAAAGAAAAAAATACCCAGTTAAAGGGTGCTACAGGAAGAAAAATAATTGGTATCATTGACTAAATTAGCATTTTCTAATTTTATAGGTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAG</genome_strand>
        <mrna_strand>GGTATTGCAGCTCCTTTATTGAAGGTCCTATTGTTGGCCGTGCCTAGTTGCTAATTAAGTAAAAAGGTCTAAATAATTGTGATATGATAAGAGCAAAGGTAGCTTAAGTAAATATACACTGATAGTAGATGATCATACACTTAAAATTTTAGGATAGTAACCTTCTCAGTATATGGTATAATGACTGATATTTGAAGTACCGACAGAAGTTTGCGTGTGTTGTGGCTAAATCCACCATCATTTCTCCTTTTTGCTGCTGTGACTTAATATGCTGTTATTCGTAACTGCACTGTTCTTGTTGAAATAGAAATGCCAGCTCGTCACTCTGGCAACTCATATCTCCCCCGTCTACTGATCCCCAGCCAGGAAAAGAAAAAAATACCCAGTTAAAGGGTGCTACAGGAAGAAAAATAATTGGTATCATTGACTAAATTAGCATTTTCTAATTTTATAGGTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATNTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389466" ref_strand="+" ref_description="SGN-E389466 [TUS-4-B21](-)">
      <seq>ccaggaaaagaaaaaaatacccagttaaagggtgctacaggaagaaaaataattggtatcattgactaaattagcattttctaattttataggtgtgactttcaagacattctcttagagatggaccgtattttgcgtccagaaggagctgtcattctaagagacaatgtagatgtactgatcaaggtgaagaagataataggaggcatgaggtggaacttcaaattgatggatcatgaggacggtccccttgttcccgaaaaaatactggttgctgtcaaacaatattggactctgggtgataccaactccacatcctcacaatgagatgccaccgaagatgttgtctgaccatatgaactcgtatggatcaggaagaccaacatcttatgaatacaaaatccatggttatgcaagacgtttcacccctaggaattttgatcgagcagggtcccttgacaggtgactccacggcacatctttagtcttgatggatccataaattataccagatgatttagcgtttataactgtcttcattttcttctctgttccatgtctcgttagataatgactctaaaaactgagctacatgggattattatgaagctttttgaaagtcctttataaacatttcttccctcgatatatagactctgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="119075" stop="120337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119375" g_stop="120037" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E389466" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119375" e_stop="120037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGAAAAGAAAAAAATACCCAGTTAAAGGGTGCTACAGGAAGAAAAATAATTGGTATCATTGACTAAATTAGCATTTTCTAATTTTATAGGTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGAACTTCAAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTCAAACAATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCATATGAACTCGTATGGATCAGGAAGACCAACATCTTATGAATACAAAATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGAAGCTTTTTGAAAGTCCTTTATAAACATTTCTTCCCTCGATATATAGACTCTGTAAT</genome_strand>
        <mrna_strand>CCAGGAAAAGAAAAAAATACCCAGTTAAAGGGTGCTACAGGAAGAAAAATAATTGGTATCATTGACTAAATTAGCATTTTCTAATTTTATAGGTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGAACTTCAAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTCAAACAATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCATATGAACTCGTATGGATCAGGAAGACCAACATCTTATGAATACAAAATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGAAGCTTTTTGAAAGTCCTTTATAAACATTTCTTCCCTCGATATATAGACTCTGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550091" ref_strand="+" ref_description="SGN-E550091 [TUS-5-B33](-)">
      <seq>ggaaaagaaaaaaatacccagttaaagggtgctacaggaagaaaaataattggtatcattgactaaattagcattttctaattttataggtgtgactttcaagacattctcttagagatggaccgtattttgcgtccagaaggagctgtcattctaagagacaatgtagatgtactgatcaaggtgaagaagataataggaggcatgaggtggaacttcaaattgatggatcatgaggacggtccccttgttcccgaaaaaatactggttgctgtcaaacaatattggactctgggtgataccaactccacatcctcacaatgagatgccaccgaagatgttgtctgaccatatgaactcgtatggatcaggaagaccaacatcttatgaatacaaaatccatggttatgcaagacgtttcacccctaggaattttgatcgagcagggtcccttgacaggtgactccacggcacatctttagtcttgatggatccataaattataccagatgatttagcgtttataactgtcttcattttcttctctgttccatgtctcgttagataatgactctaaaaactgagctacatgggattattatgaagctttttgaaagtcctttataaacatttcttccctcgatatatagactctgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="119078" stop="120336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119378" g_stop="120036" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E550091" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119378" e_stop="120036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGAAAAAAATACCCAGTTAAAGGGTGCTACAGGAAGAAAAATAATTGGTATCATTGACTAAATTAGCATTTTCTAATTTTATAGGTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGAACTTCAAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTCAAACAATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCATATGAACTCGTATGGATCAGGAAGACCAACATCTTATGAATACAAAATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGAAGCTTTTTGAAAGTCCTTTATAAACATTTCTTCCCTCGATATATAGACTCTGTAA</genome_strand>
        <mrna_strand>GGAAAAGAAAAAAATACCCAGTTAAAGGGTGCTACAGGAAGAAAAATAATTGGTATCATTGACTAAATTAGCATTTTCTAATTTTATAGGTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGAACTTCAAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTCAAACAATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCATATGAACTCGTATGGATCAGGAAGACCAACATCTTATGAATACAAAATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGAAGCTTTTTGAAAGTCCTTTATAAACATTTCTTCCCTCGATATATAGACTCTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616247" ref_strand="+" ref_description="SGN-E616247 [66054]">
      <seq>ttgctgtctgaccatatgaacttgtatggatcaggaagaccaacatcttatgaatggttatgcaagacattccaccactagaaattttgatcgagcagggtcccttgagaggagactccacggcatatctttagtcttgatggatccataaattataccagatgatttagcgtttataactgtcttctttttcttctctgttccatgtctcgttagataatgactctaaaaactgagcaacatgggattattatgaagcttttcgaaagtccttaggaacatttgttccctcgatatatagactctctaatgtgttgttcaattatagtggaatcttgatcttgttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="119416" stop="120374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119715" g_stop="120073" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="348" polyA_stop="391"/>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E616247" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119715" e_stop="120073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTGTCTGACCATATGAACTCGTATGGATCAGGAAGACCAACATCTTATGAATACAAAATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGAAGCTTTTTGAAAGTCCTTTATAAACATTTCTTCCCTCGATATATAGACTCTGTAATGTGTTGTTTAATTAAAGTGGAAATTTGATCTAGTTG</genome_strand>
        <mrna_strand>TTGCTGTCTGACCATATGAACTTGTATGGATCAGGAAGACCAACATCTTATG--------A---ATGGTTATGCAAGACATTCCACCACTAGAAATTTTGATCGAGCAGGGTCCCTTGAGAGGAGACTCCACGGCATATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCTTTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCAACATGGGATTATTATGAAGCTTTTCGAAAGTCC-TTAGGAACATTTGTTCCCTCGATATATAGACTCTCTAATGTGTTGTTCAATTATAGTGGAATCTTGATCTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229657" ref_strand="+" ref_description="SGN-E229657 [cLEL-4-N2](-)">
      <seq>gttgtctgaccatatgaactcgtatggatcaggaagaccaacatcttatgaatacaaaatccatggttatgcaagacgtttcacccctaggaattttgatcgagcagggtcccttgacaggtgactccacggcacatctttagtcttgatggatccataaattataccagatgatttagcgtttataactgtcttcattttcttctctgttccatgtctcgttagataatgactctaaaaactgagctacatgggattattatgaagctttttgaaagtcctttataaacatttcttccctcgatatatagactctgtaatgtgttgtttaattaaagtggaaatttgatctagttgatttctgatatgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="119417" stop="120388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119717" g_stop="120085" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="370" polyA_stop="389"/>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E229657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119717" e_stop="120085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTCTGACCATATGAACTCGTATGGATCAGGAAGACCAACATCTTATGAATACAAAATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGAAGCTTTTTGAAAGTCCTTTATAAACATTTCTTCCCTCGATATATAGACTCTGTAATGTGTTGTTTAATTAAAGTGGAAATTTGATCTAGTTGATTTCTGATATG</genome_strand>
        <mrna_strand>GTTGTCTGACCATATGAACTCGTATGGATCAGGAAGACCAACATCTTATGAATACAAAATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGAAGCTTTTTGAAAGTCCTTTATAAACATTTCTTCCCTCGATATATAGACTCTGTAATGTGTTGTTTAATTAAAGTGGAAATTTGATCTAGTTGATTTCTGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221117" ref_strand="+" ref_description="SGN-E221117 [cLEL-22-D9](-)">
      <seq>tggatcaggaagaccaacatcttatgaatacaaaatccatggttatgcaagacgtttcacccctaggaattttgatcgagcagggtcccttgacaggtgactccacggcacatctttagtcttgatggatccataaattataccagatgatttagcgtttataactgtcttcattttcttctctgttccatgtctcgttagataatgactctaaaacgtgagctacatgggattattatgaagctttttgaaagtcctttataaacatttcttccctcgatatatagactctgtaatgtgttgtttaattaaagtggaaatttgatctcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="119441" stop="120368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119741" g_stop="120069" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120070" i_stop="120120" i_length="51">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120121" g_stop="120140" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="349" r_length="20" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E221117" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119741" e_stop="120069"/>
          <exon e_start="120121" e_stop="120140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATCAGGAAGACCAACATCTTATGAATACAAAATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGAAGCTTTTTGAAAGTCCTTTATAAACATTTCTTCCCTCGATATATAGACTCTGTAATGTGTTGTTTAATTAAAGTGGAAATTTGATCTAGTTGATTTCTGATATGATATCTTGATTCAGTAATTGTTTTTTCTTCAATAGAATGAGAAAAGAGCAAAAAA</genome_strand>
        <mrna_strand>TGGATCAGGAAGACCAACATCTTATGAATACAAAATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAACGTGAGCTACATGGGATTATTATGAAGCTTTTTGAAAGTCCTTTATAAACATTTCTTCCCTCGATATATAGACTCTGTAATGTGTTGTTTAATTAAAGTGGAAATTTGATCTC...................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221259" ref_strand="+" ref_description="SGN-E221259 [cLEL-22-D9](-)">
      <seq>atccatggttatgcaagacgtttcacccctaggaattttgatcgagcagggtcccttgacaggtgactccacggcacatctttagtcttgatggatccataaattataccagatgatttagcgtttataactgtcttcattttcttctctgttccatgtctcgttagataatgactctaaaaactgagctacatgggattattatgaagctttttgaaagtcctttataaacatttcttccctcgatatatagactctgtaatgtgttgtttaattaaagtggaaatttgatctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="119475" stop="120369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119775" g_stop="120069" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120070" i_stop="120120" i_length="51">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120121" g_stop="120141" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="316" r_length="21" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E221259" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119775" e_stop="120069"/>
          <exon e_start="120121" e_stop="120141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGAAGCTTTTTGAAAGTCCTTTATAAACATTTCTTCCCTCGATATATAGACTCTGTAATGTGTTGTTTAATTAAAGTGGAAATTTGATCTAGTTGATTTCTGATATGATATCTTGATTCAGTAATTGTTTTTTCTTCAATAGAATGAGAAAAGAGCAAAAAAT</genome_strand>
        <mrna_strand>ATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGAAGCTTTTTGAAAGTCCTTTATAAACATTTCTTCCCTCGATATATAGACTCTGTAATGTGTTGTTTAATTAAAGTGGAAATTTGATCTA...................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229418" ref_strand="+" ref_description="SGN-E229418 [cLEL-4-N14](-)">
      <seq>tcacccctaggaattttgatcgagcagggtcccttgacaggtgactccacggcacatctttagtcttgatggatccataaattataccagatgatttagcgtttataactgtcttcattttcttctctgttccatgtctcgttagataatgactctaaaaactgagctacatgggattattatggagctttttgaaagtcctttataaacatttcttccctcgatatatagactctgtaatgtgttgtttaattcaaagtggccatttgatctagttgatttctaaaatgtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="119497" stop="120388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119797" g_stop="120085" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="292" polyA_stop="310"/>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E229418" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119797" e_stop="120085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGAAGCTTTTTGAAAGTCCTTTATAAACATTTCTTCCCTCGATATATAGACTCTGTAATGTGTTGTTTAATT-AAAGTGGAAATTTGATCTAGTTGATTTCTGATATG</genome_strand>
        <mrna_strand>TCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGGAGCTTTTTGAAAGTCCTTTATAAACATTTCTTCCCTCGATATATAGACTCTGTAATGTGTTGTTTAATTCAAAGTGGCCATTTGATCTAGTTGATTTCTAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241290" ref_strand="+" ref_description="SGN-E241290 [cLED-26-N11]">
      <seq>acaataggagctaatcatcaagatttgcacttcaagagaattgatgattcaggagtagttggattgaaatcagatgagcgtttcgtcgttcctgtttatgatcctaaaggtgggaatgggatacaaatgatcaaaaaggaaacagaagaagaggaatcaagaaagtcactagaagtgtttggcttttcaataacagagaaagaaagaagcaaaatgagtcttgagaagaacataggcatgttaacatgggatgcaattgttccgaaagctgaagaaatcgacattatcaacataggtgcaagttcaaatggaacctatgaagaagattacgcagaaagtgatgcaagttcagacttgtttgaaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="122142" stop="123108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122442" g_stop="122808" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E241290" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122442" e_stop="122808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATAGGAGCTAATCATCAAGATTTGCACTTCAAGAGAATTGATGATTCAGGAGTAGTTGGATTGAAATCAGATGAGCGTTTCGTCGTTCCTGTTTATGATCCTAAAGGTGGGAATGGGATACAAATGATCAAAAAGGAAACAGAAGAAGAGGAATCAAGAAAGTCACTAGAAGTGTTTGGCTTTTCAATAACAGAGAAAGAAAGAAGCAAAATGAGTCTTGAGAAGAACATAGGCATGTTAACATGGGATGCAATTGTTCCGAAAGCTGAAGAAATCGACATTATCAACATAGGTGCAAGTTCAAATGGAACCTATGAAGAAGATTACGCAGAAAGTGATGCAAGTTCAGACTTGTTTGAAATCG</genome_strand>
        <mrna_strand>ACAATAGGAGCTAATCATCAAGATTTGCACTTCAAGAGAATTGATGATTCAGGAGTAGTTGGATTGAAATCAGATGAGCGTTTCGTCGTTCCTGTTTATGATCCTAAAGGTGGGAATGGGATACAAATGATCAAAAAGGAAACAGAAGAAGAGGAATCAAGAAAGTCACTAGAAGTGTTTGGCTTTTCAATAACAGAGAAAGAAAGAAGCAAAATGAGTCTTGAGAAGAACATAGGCATGTTAACATGGGATGCAATTGTTCCGAAAGCTGAAGAAATCGACATTATCAACATAGGTGCAAGTTCAAATGGAACCTATGAAGAAGATTACGCAGAAAGTGATGCAAGTTCAGACTTGTTTGAAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304109" ref_strand="+" ref_description="SGN-E304109 [cLEX-6-P21]">
      <seq>agaactagactcgagtttttttttttttttttttttttttcatgattaaaaaaagttttcttattaaccttcaccaacaacttattacaggttcagttaatgggaaaaaacggaaagctaaaacacctccaaacatactttcttatatgtgtattcatcaactttggctaacattaccattttccttaacaccattatgtttttcgtttacactgacaacactcttagctgggtaagaagctgttacttctttctttccctcgcgatctttcttttctttctccttctaagccgccttcgctctttcttcttcctcagccttaagtttcgcttcctcttttgcagtttcgagagctttaatcaatctctctaaacaaatatctgcattttcctttgaagacttaggcatcaaatcctcagcattatcagcaggagtcatattagtttcctctaataaacgacgaatctgaggaaagtgaacatgagattcaacgacgtcaagatagttatgtgcaagaactttgaatgactcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="9285" stop="128112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127277" g_stop="127812" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E304109" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127277" e_stop="127812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGCAAAATATGGATTGTGATGCTAAAATTTGAGTGTTTCATGATTAAAAAAAGTTTTCTTATTAACCTTCACCAACAACTTATTACAAGTTCAGCTAATTGTAGAAAACAGAAAGCTAAAACACCTCCAAACATACTTTCTTATATGTGTATTCATCAACTTTTGCTAACATTACCATTTTCCTTAACACCATTATCTTTTTCGTTTACACTGTCAACACTCTTAGCTTCTTCAGTAGCTGTTACTTCTTTCTTTTCCTCGCGATCTTTCTCTTCTTTCTCCTTCTCAGCCGCCTTTGCTCTCTCTTCTTCCTCAGCCTTAAGTTTCGCTTCCTCTTTTGCAGTTTCGAGAGCTTTAATCAATCTCTCTAAACAAATATCTGCATTTTCCTTTGAAGACTTAGGCATCAAATTCTCAGCAATATCAGCAGGAGTCATATTAGTTTCCTCTAATAAACGACGAATCTGAGGAAAGTGAACATGAGATTCAACGACGTCAAGATAGTTATGTGCAAGAACTTTGAATGACTCAAA</genome_strand>
        <mrna_strand>AGAA-CTAGACTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTCATGATTAAAAAAAGTTTTCTTATTAACCTTCACCAACAACTTATTACAGGTTCAGTTAATGGGAAAAAACGGAAAGCTAAAACACCTCCAAACATACTTTCTTATATGTGTATTCATCAACTTTGGCTAACATTACCATTTTCCTTAACACCATTATGTTTTTCGTTTACACTGACAACACTCTTAGCTGGGTAAGAAGCTGTTACTTCTTTCTTTCCCTCGCGATCTTTCTTTTCTTTCTCCTTCTAAGCCGCCTTCGCTCTTTCTTCTTCCTCAGCCTTAAGTTTCGCTTCCTCTTTTGCAGTTTCGAGAGCTTTAATCAATCTCTCTAAACAAATATCTGCATTTTCCTTTGAAGACTTAGGCATCAAATCCTCAGCATTATCAGCAGGAGTCATATTAGTTTCCTCTAATAAACGACGAATCTGAGGAAAGTGAACATGAGATTCAACGACGTCAAGATAGTTATGTGCAAGAACTTTGAATGACTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356122" ref_strand="+" ref_description="SGN-E356122 [cTOS-20-C5]">
      <seq>taactttatcaggactattgaacttcattgatggtctatggtcagctattggcggtgaaaggctaatcgtcttcactacaaactacgtggagaagcttgatcctgctctaatccggagggggagaatggataaacatattgtcctatcatactgttgctttgagtcattcaaagttcttgcacataactatcttgacgtcgttgaatctcatgttcactttcctcagattcgtcgtttattagaggaaactaatatgactcctgctgatattgctgagaatttgatgcctaagtcttcaaaggaaaatgcagatatttgtttagagagattgattaaagctctcgaaactgcaaaagaggaagcgaaacttaaggctgaggaagaagagagagcaaaggcggctgagaaggagaaagaagagaaagatcgcgaggaaaagaaagaagtaacagctactgaagaagctaagagtgttgacagtgtaaacgaaaaagataatggtgttaaggaaaatggtaatgttagcaaaagttgatgaatacacatataagaaagtatgtttggaggtgttttagctttctgttttctacaattagctgaacttgtaataagttgttggtngaagttaataagaaaacttttttttatcatgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="128270" stop="9305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127970" g_stop="127302" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E356122" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127970" e_stop="127302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTTATCAGGACTATTGAACTTCATTGATGGTCTATGGTCAGCTATTGGCGGTGAAAGGCTAATCGTCTTCACTACAAACTACGTGGAGAAGCTTGATCCTGCTCTAATCCGGAGGGGGAGAATGGATAAACATATTGTCCTATCATACTGTTGCTTTGAGTCATTCAAAGTTCTTGCACATAACTATCTTGACGTCGTTGAATCTCATGTTCACTTTCCTCAGATTCGTCGTTTATTAGAGGAAACTAATATGACTCCTGCTGATATTGCTGAGAATTTGATGCCTAAGTCTTCAAAGGAAAATGCAGATATTTGTTTAGAGAGATTGATTAAAGCTCTCGAAACTGCAAAAGAGGAAGCGAAACTTAAGGCTGAGGAAGAAGAGAGAGCAAAGGCGGCTGAGAAGGAGAAAGAAGAGAAAGATCGCGAGGAAAAGAAAGAAGTAACAGCTACTGAAGAAGCTAAGAGTGTTGACAGTGTAAACGAAAAAGATAATGGTGTTAAGGAAAATGGTAATGTTAGCAAAAGTTGATGAATACACATATAAGAAAGTATGTTTGGAGGTGTTTTAGCTTTCTGTTTTCTACAATTAGCTGAACTTGTAATAAGTTGTTGGTGAAGGTTAATAAGAAAACTTTTTTTAATCATGAAACACTCAAATTTTA</genome_strand>
        <mrna_strand>TAACTTTATCAGGACTATTGAACTTCATTGATGGTCTATGGTCAGCTATTGGCGGTGAAAGGCTAATCGTCTTCACTACAAACTACGTGGAGAAGCTTGATCCTGCTCTAATCCGGAGGGGGAGAATGGATAAACATATTGTCCTATCATACTGTTGCTTTGAGTCATTCAAAGTTCTTGCACATAACTATCTTGACGTCGTTGAATCTCATGTTCACTTTCCTCAGATTCGTCGTTTATTAGAGGAAACTAATATGACTCCTGCTGATATTGCTGAGAATTTGATGCCTAAGTCTTCAAAGGAAAATGCAGATATTTGTTTAGAGAGATTGATTAAAGCTCTCGAAACTGCAAAAGAGGAAGCGAAACTTAAGGCTGAGGAAGAAGAGAGAGCAAAGGCGGCTGAGAAGGAGAAAGAAGAGAAAGATCGCGAGGAAAAGAAAGAAGTAACAGCTACTGAAGAAGCTAAGAGTGTTGACAGTGTAAACGAAAAAGATAATGGTGTTAAGGAAAATGGTAATGTTAGCAAAAGTTGATGAATACACATATAAGAAAGTATGTTTGGAGGTGTTTTAGCTTTCTGTTTTCTACAATTAGCTGAACTTGTAATAAGTTGTTGGTNGAAGTTAATAAGAAAACTTTTTTTTATCATGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349679" ref_strand="+" ref_description="SGN-E349679 [cTOS-3-M20]">
      <seq>ttgatcctgctctaatccggagggggagaatggataaacatattgtcctatcatactgttgctttgagtcattcaaagttcttgcacataactatcttgacgtcgttgaatctcatgttcactttcctcagattcgtcgtttattagaggaaactaatatgactcctgctgatattgctgagaatttgatgcctaagtcttcaaaggaaaatgcagatatttgtttagagagattgattaaagctctcgaaactgcaaaagaggaagcgaaacttaaggctgaggaagaagagagagcaaaggcggctgagaaggagaaagaagagaaagatcgcgaggaaaagaaagaagtaacagctactgaagaagctaagagtgttgacagtgtaaacgaaaaagataatggtgttaaggaaaatggtaatgttagcaaaagttgatgaatacacatataagaaagtatgtttggaggtgttttagctttctgttttctacaattagctgaacttgtaataagttgttggtgaaggttaataagaaaactttttttaatcatgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="128174" stop="9305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127874" g_stop="127302" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E349679" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127874" e_stop="127302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCCTGCTCTAATCCGGAGGGGGAGAATGGATAAACATATTGTCCTATCATACTGTTGCTTTGAGTCATTCAAAGTTCTTGCACATAACTATCTTGACGTCGTTGAATCTCATGTTCACTTTCCTCAGATTCGTCGTTTATTAGAGGAAACTAATATGACTCCTGCTGATATTGCTGAGAATTTGATGCCTAAGTCTTCAAAGGAAAATGCAGATATTTGTTTAGAGAGATTGATTAAAGCTCTCGAAACTGCAAAAGAGGAAGCGAAACTTAAGGCTGAGGAAGAAGAGAGAGCAAAGGCGGCTGAGAAGGAGAAAGAAGAGAAAGATCGCGAGGAAAAGAAAGAAGTAACAGCTACTGAAGAAGCTAAGAGTGTTGACAGTGTAAACGAAAAAGATAATGGTGTTAAGGAAAATGGTAATGTTAGCAAAAGTTGATGAATACACATATAAGAAAGTATGTTTGGAGGTGTTTTAGCTTTCTGTTTTCTACAATTAGCTGAACTTGTAATAAGTTGTTGGTGAAGGTTAATAAGAAAACTTTTTTTAATCATGAAACACTCAAATTTTA</genome_strand>
        <mrna_strand>TTGATCCTGCTCTAATCCGGAGGGGGAGAATGGATAAACATATTGTCCTATCATACTGTTGCTTTGAGTCATTCAAAGTTCTTGCACATAACTATCTTGACGTCGTTGAATCTCATGTTCACTTTCCTCAGATTCGTCGTTTATTAGAGGAAACTAATATGACTCCTGCTGATATTGCTGAGAATTTGATGCCTAAGTCTTCAAAGGAAAATGCAGATATTTGTTTAGAGAGATTGATTAAAGCTCTCGAAACTGCAAAAGAGGAAGCGAAACTTAAGGCTGAGGAAGAAGAGAGAGCAAAGGCGGCTGAGAAGGAGAAAGAAGAGAAAGATCGCGAGGAAAAGAAAGAAGTAACAGCTACTGAAGAAGCTAAGAGTGTTGACAGTGTAAACGAAAAAGATAATGGTGTTAAGGAAAATGGTAATGTTAGCAAAAGTTGATGAATACACATATAAGAAAGTATGTTTGGAGGTGTTTTAGCTTTCTGTTTTCTACAATTAGCTGAACTTGTAATAAGTTGTTGGTGAAGGTTAATAAGAAAACTTTTTTTAATCATGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201249" ref_strand="+" ref_description="SGN-E201249 [cLEC-10-M12]">
      <seq>tttttttttcatgattaaaaaaagttttcttattaaccttcaccaacaacttattacaagttcagctaattgtagaaaacagaaagctaaaacacctccaaacatactttcttatatgtgtattcatcaacttttgctaacattaccattttccttaacaccattatctttttcgtttacactgtcaacactcttagcttcttcagtagctgttacttctttcttttcctcgcgatctttctcttctttctccttctcagccgcctttgctctctcttcttcctcagccttaagtttcgcttcctcttttgcagtttcgagagctttaatcaatctctctaaacaaatatctgcattttcctttgaagacttaggcatcaaattctcagcaatatcagcaggagtcatattagtttcctctaataaacgacgaatctgaggaaagtgaacatgagattcaacgacgtcaagatagttatgtgcaagaactttgaatgactcaaagcaacagtatgataggacaatatgtttatccattctccccctccggattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="127013" stop="128163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127309" g_stop="127863" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E201249" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127309" e_stop="127863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTGTTTCATGATTAAAAAAAGTTTTCTTATTAACCTTCACCAACAACTTATTACAAGTTCAGCTAATTGTAGAAAACAGAAAGCTAAAACACCTCCAAACATACTTTCTTATATGTGTATTCATCAACTTTTGCTAACATTACCATTTTCCTTAACACCATTATCTTTTTCGTTTACACTGTCAACACTCTTAGCTTCTTCAGTAGCTGTTACTTCTTTCTTTTCCTCGCGATCTTTCTCTTCTTTCTCCTTCTCAGCCGCCTTTGCTCTCTCTTCTTCCTCAGCCTTAAGTTTCGCTTCCTCTTTTGCAGTTTCGAGAGCTTTAATCAATCTCTCTAAACAAATATCTGCATTTTCCTTTGAAGACTTAGGCATCAAATTCTCAGCAATATCAGCAGGAGTCATATTAGTTTCCTCTAATAAACGACGAATCTGAGGAAAGTGAACATGAGATTCAACGACGTCAAGATAGTTATGTGCAAGAACTTTGAATGACTCAAAGCAACAGTATGATAGGACAATATGTTTATCCATTCTCCCCCTCCGGATTAG</genome_strand>
        <mrna_strand>TTTTTTTTTCATGATTAAAAAAAGTTTTCTTATTAACCTTCACCAACAACTTATTACAAGTTCAGCTAATTGTAGAAAACAGAAAGCTAAAACACCTCCAAACATACTTTCTTATATGTGTATTCATCAACTTTTGCTAACATTACCATTTTCCTTAACACCATTATCTTTTTCGTTTACACTGTCAACACTCTTAGCTTCTTCAGTAGCTGTTACTTCTTTCTTTTCCTCGCGATCTTTCTCTTCTTTCTCCTTCTCAGCCGCCTTTGCTCTCTCTTCTTCCTCAGCCTTAAGTTTCGCTTCCTCTTTTGCAGTTTCGAGAGCTTTAATCAATCTCTCTAAACAAATATCTGCATTTTCCTTTGAAGACTTAGGCATCAAATTCTCAGCAATATCAGCAGGAGTCATATTAGTTTCCTCTAATAAACGACGAATCTGAGGAAAGTGAACATGAGATTCAACGACGTCAAGATAGTTATGTGCAAGAACTTTGAATGACTCAAAGCAACAGTATGATAGGACAATATGTTTATCCATTCTCCCCCTCCGGATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350657" ref_strand="+" ref_description="SGN-E350657 [cTOS-7-K11]">
      <seq>taactttatcaggactattgaacttcattgatggtctatggtcagctattggcggtgaaaggctaatcgtcttcactacaaactacgtggagaagcttgatcctgctctaatccggagggggagaatggataaacatattgtcctatcatactgttgctttgagtcattcaaagttcttgcacataactatcttgacgtcgttgaatctcatgttcactttcctcagattcgtcgtttattagaggaaactaatatgactcctgctgatattgctgagaatttgatgcctaagtcttcaaaggaaaatgcagatatttgtttagagagattgattaaagctctcgaaactgcaaaagaggaagcgaaacttaaggctgaggaagaagagagagcaaaggcggctgagaaggagaaagaagagaaagatcgcgaggaaaagaaagaagtaacagctactgaagaagctaagagtgttgacagtgtaaacgaaaaagataatggtgttaagggaaatggtaatgttagcaaaagttgatgaatacacatataagaaagtatgtttggaggtgttttagctttttctgtttctacaattagctgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="128270" stop="127067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127970" g_stop="127367" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E350657" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127970" e_stop="127367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTTATCAGGACTATTGAACTTCATTGATGGTCTATGGTCAGCTATTGGCGGTGAAAGGCTAATCGTCTTCACTACAAACTACGTGGAGAAGCTTGATCCTGCTCTAATCCGGAGGGGGAGAATGGATAAACATATTGTCCTATCATACTGTTGCTTTGAGTCATTCAAAGTTCTTGCACATAACTATCTTGACGTCGTTGAATCTCATGTTCACTTTCCTCAGATTCGTCGTTTATTAGAGGAAACTAATATGACTCCTGCTGATATTGCTGAGAATTTGATGCCTAAGTCTTCAAAGGAAAATGCAGATATTTGTTTAGAGAGATTGATTAAAGCTCTCGAAACTGCAAAAGAGGAAGCGAAACTTAAGGCTGAGGAAGAAGAGAGAGCAAAGGCGGCTGAGAAGGAGAAAGAAGAGAAAGATCGCGAGGAAAAGAAAGAAGTAACAGCTACTGAAGAAGCTAAGAGTGTTGACAGTGTAAACGAAAAAGATAATGGTGTTAAGGAAAATGGTAATGTTAGCAAAAGTTGATGAATACACATATAAGAAAGTATGTTTGGAGGTGTTTTAGCTTTCTGT-TTTCTACAATTAGCTGAACT</genome_strand>
        <mrna_strand>TAACTTTATCAGGACTATTGAACTTCATTGATGGTCTATGGTCAGCTATTGGCGGTGAAAGGCTAATCGTCTTCACTACAAACTACGTGGAGAAGCTTGATCCTGCTCTAATCCGGAGGGGGAGAATGGATAAACATATTGTCCTATCATACTGTTGCTTTGAGTCATTCAAAGTTCTTGCACATAACTATCTTGACGTCGTTGAATCTCATGTTCACTTTCCTCAGATTCGTCGTTTATTAGAGGAAACTAATATGACTCCTGCTGATATTGCTGAGAATTTGATGCCTAAGTCTTCAAAGGAAAATGCAGATATTTGTTTAGAGAGATTGATTAAAGCTCTCGAAACTGCAAAAGAGGAAGCGAAACTTAAGGCTGAGGAAGAAGAGAGAGCAAAGGCGGCTGAGAAGGAGAAAGAAGAGAAAGATCGCGAGGAAAAGAAAGAAGTAACAGCTACTGAAGAAGCTAAGAGTGTTGACAGTGTAAACGAAAAAGATAATGGTGTTAAGGGAAATGGTAATGTTAGCAAAAGTTGATGAATACACATATAAGAAAGTATGTTTGGAGGTGTTTTAGCTTTTTCTGTTTCTACAATTAGCTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353084" ref_strand="+" ref_description="SGN-E353084 [cTOS-14-B14]">
      <seq>tctaatccggagggggagaatggataaacatattgtcctatcatactgttgctttgagtcattcaaagttcttgcacataactatcttgacgtcgttgaatctcatgttcactttcctcagattcgtcgtttattagaggaaactaatatgactcctgctgatattgctgagaatttgatgcctaagtcttcaaaggaaaatgcagatatttgtttagagagattgattaaagctctcgaaactgcaaaagaggaagcgaaacttaaggctgaggaagaagagagagcaaaggcggctgagaaggagaaagaagagaaagatcgcgaggaaaagaaagaagtaacagctactgaagaagctaagagtgttgacagtgtaaacgaaaaagataatggtgttaaggaaaatggtaatgttagcaaaagttgatgaatacacatataagaaagtatgtttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="128164" stop="127106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127864" g_stop="127406" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E353084" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127864" e_stop="127406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATCCGGAGGGGGAGAATGGATAAACATATTGTCCTATCATACTGTTGCTTTGAGTCATTCAAAGTTCTTGCACATAACTATCTTGACGTCGTTGAATCTCATGTTCACTTTCCTCAGATTCGTCGTTTATTAGAGGAAACTAATATGACTCCTGCTGATATTGCTGAGAATTTGATGCCTAAGTCTTCAAAGGAAAATGCAGATATTTGTTTAGAGAGATTGATTAAAGCTCTCGAAACTGCAAAAGAGGAAGCGAAACTTAAGGCTGAGGAAGAAGAGAGAGCAAAGGCGGCTGAGAAGGAGAAAGAAGAGAAAGATCGCGAGGAAAAGAAAGAAGTAACAGCTACTGAAGAAGCTAAGAGTGTTGACAGTGTAAACGAAAAAGATAATGGTGTTAAGGAAAATGGTAATGTTAGCAAAAGTTGATGAATACACATATAAGAAAGTATGTTTGG</genome_strand>
        <mrna_strand>TCTAATCCGGAGGGGGAGAATGGATAAACATATTGTCCTATCATACTGTTGCTTTGAGTCATTCAAAGTTCTTGCACATAACTATCTTGACGTCGTTGAATCTCATGTTCACTTTCCTCAGATTCGTCGTTTATTAGAGGAAACTAATATGACTCCTGCTGATATTGCTGAGAATTTGATGCCTAAGTCTTCAAAGGAAAATGCAGATATTTGTTTAGAGAGATTGATTAAAGCTCTCGAAACTGCAAAAGAGGAAGCGAAACTTAAGGCTGAGGAAGAAGAGAGAGCAAAGGCGGCTGAGAAGGAGAAAGAAGAGAAAGATCGCGAGGAAAAGAAAGAAGTAACAGCTACTGAAGAAGCTAAGAGTGTTGACAGTGTAAACGAAAAAGATAATGGTGTTAAGGAAAATGGTAATGTTAGCAAAAGTTGATGAATACACATATAAGAAAGTATGTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601470" ref_strand="+" ref_description="SGN-E601470 [54510]">
      <seq>cgagctaagaaaacttctaatagacactacaggtaaatctattattgtgattgaagacattgattgctcccttgaccttacaggtcaacgagagacgaataagaagaagaaagaagaggaagataaaggaaaaaatgaggaagatgccatcaagggagaaaatgaaaaaaggaggagaggtgaaagaaaagcaaagtgaggtaactttatctggacttttgaacttcattgatggtctatggtcagctattggcggtgaaaggcttatcgtctttactaccaactatgtggagaagcttgatcctgctctaattaggagggggaggatggataaacatattgtcctatcctattgttgctttgagtcattcaaagttcttgcacataactatcttgacgtcgttgaatctcatgttcactttcctgagattcgtcgtttattggaggaaactaatatgactcctgctgatattgctgagaatttgatgcctaagtcttcaaaggaaaatgcagacacttgtttggagagattgattaaagctcttgaaactgcaaaagaggaagcgaaattgaaggctgaggaagaagagagagcaaaggcggctgaaaaggagaaggaagagaaagatcgcgaggaaaagaaagaagtaacagatactgaagaagctaagaatactgacggtgtaaacgaaaaaagataattgtgttaagggacaaatggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="128470" stop="127153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128170" g_stop="127455" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E601470" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128170" e_stop="127455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCTAAGAAAACTCCTGATAGATACAACAGGTAAATCTATTATTGTGATTGAAGACATAGATTGTTCCCTTGACCTAACAGGTCAACGAGAGACGAATAAGAAGAAGAAAGAAGAGGAAGATAAAGGAAAAACTGAGGAAGATGCCGTCAA-GGAGAAGATGAAAAAAGGCGGAGAGACGAAAGAAAAGCAAAGTGAGGTAACTTTATCAGGACTATTGAACTTCATTGATGGTCTATGGTCAGCTATTGGCGGTGAAAGGCTAATCGTCTTCACTACAAACTACGTGGAGAAGCTTGATCCTGCTCTAATCCGGAGGGGGAGAATGGATAAACATATTGTCCTATCATACTGTTGCTTTGAGTCATTCAAAGTTCTTGCACATAACTATCTTGACGTCGTTGAATCTCATGTTCACTTTCCTCAGATTCGTCGTTTATTAGAGGAAACTAATATGACTCCTGCTGATATTGCTGAGAATTTGATGCCTAAGTCTTCAAAGGAAAATGCAGATATTTGTTTAGAGAGATTGATTAAAGCTCTCGAAACTGCAAAAGAGGAAGCGAAACTTAAGGCTGAGGAAGAAGAGAGAGCAAAGGCGGCTGAGAAGGAGAAAGAAGAGAAAGATCGCGAGGAAAAGAAAGAAGTAACAGCTACTGAAGAAGCTAAGAGTGTTGACAGTGTAAACG-AAAAAGATAATGGTGTTAAGGAAAATG</genome_strand>
        <mrna_strand>CGAGCTAAGAAAACTTCTAATAGACACTACAGGTAAATCTATTATTGTGATTGAAGACATTGATTGCTCCCTTGACCTTACAGGTCAACGAGAGACGAATAAGAAGAAGAAAGAAGAGGAAGATAAAGGAAAAAATGAGGAAGATGCCATCAAGGGAGAAAATGAAAAAAGGAGGAGAGGTGAAAGAAAAGCAAAGTGAGGTAACTTTATCTGGACTTTTGAACTTCATTGATGGTCTATGGTCAGCTATTGGCGGTGAAAGGCTTATCGTCTTTACTACCAACTATGTGGAGAAGCTTGATCCTGCTCTAATTAGGAGGGGGAGGATGGATAAACATATTGTCCTATCCTATTGTTGCTTTGAGTCATTCAAAGTTCTTGCACATAACTATCTTGACGTCGTTGAATCTCATGTTCACTTTCCTGAGATTCGTCGTTTATTGGAGGAAACTAATATGACTCCTGCTGATATTGCTGAGAATTTGATGCCTAAGTCTTCAAAGGAAAATGCAGACACTTGTTTGGAGAGATTGATTAAAGCTCTTGAAACTGCAAAAGAGGAAGCGAAATTGAAGGCTGAGGAAGAAGAGAGAGCAAAGGCGGCTGAAAAGGAGAAGGAAGAGAAAGATCGCGAGGAAAAGAAAGAAGTAACAGATACTGAAGAAGCTAAGAATACTGACGGTGTAAACGAAAAAAGATAATTGTGTTAAGGGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355195" ref_strand="+" ref_description="SGN-E355195 [cTOS-18-F2]">
      <seq>taactttatcaggactattgaacttcattgatggtctatggtcagctattggcggtgaaaggctaatcgtcttcactacaaactacgtggagaagcttgatcctgctctaatccggagggggagaatggataaacatattgtcctatcatactgttgctttgagtcattcaaagttcttgcacataactatcttgacgtcgttgaatctcatgttcactttcctcagattcgtcgtttattagaggaaactaatatgactcctgctgatattgctgagaatttgatgcctaagtcttcaaaggaaaatgcagatatttgtttagagagattgattaaagctctcgaaactgcaaaagaagaagcgaaacttaaggctgaagaagaagagagaacaaaggcggctgagaaggagaaagaagagaaagatcgcgaggaaaagaaagaagtaaccgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="128270" stop="127213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127970" g_stop="127513" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E355195" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127970" e_stop="127513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTTATCAGGACTATTGAACTTCATTGATGGTCTATGGTCAGCTATTGGCGGTGAAAGGCTAATCGTCTTCACTACAAACTACGTGGAGAAGCTTGATCCTGCTCTAATCCGGAGGGGGAGAATGGATAAACATATTGTCCTATCATACTGTTGCTTTGAGTCATTCAAAGTTCTTGCACATAACTATCTTGACGTCGTTGAATCTCATGTTCACTTTCCTCAGATTCGTCGTTTATTAGAGGAAACTAATATGACTCCTGCTGATATTGCTGAGAATTTGATGCCTAAGTCTTCAAAGGAAAATGCAGATATTTGTTTAGAGAGATTGATTAAAGCTCTCGAAACTGCAAAAGAGGAAGCGAAACTTAAGGCTGAGGAAGAAGAGAGAGCAAAGGCGGCTGAGAAGGAGAAAGAAGAGAAAGATCGCGAGGAAAAGAAAGAAGTAACAGCTACT</genome_strand>
        <mrna_strand>TAACTTTATCAGGACTATTGAACTTCATTGATGGTCTATGGTCAGCTATTGGCGGTGAAAGGCTAATCGTCTTCACTACAAACTACGTGGAGAAGCTTGATCCTGCTCTAATCCGGAGGGGGAGAATGGATAAACATATTGTCCTATCATACTGTTGCTTTGAGTCATTCAAAGTTCTTGCACATAACTATCTTGACGTCGTTGAATCTCATGTTCACTTTCCTCAGATTCGTCGTTTATTAGAGGAAACTAATATGACTCCTGCTGATATTGCTGAGAATTTGATGCCTAAGTCTTCAAAGGAAAATGCAGATATTTGTTTAGAGAGATTGATTAAAGCTCTCGAAACTGCAAAAGAAGAAGCGAAACTTAAGGCTGAAGAAGAAGAGAGAACAAAGGCGGCTGAGAAGGAGAAAGAAGAGAAAGATCGCGAGGAAAAGAAAGAAGTAACCGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351597" ref_strand="+" ref_description="SGN-E351597 [cTOS-12-D6]">
      <seq>taactttatcaggactattgaacttcattgatggtctatggtcagctattggcggtgaaaggctaatcgtcttcactacaaactacgtggagaagcttgatcctgctctaatccggagggggagaatggataaacatattgtcctatcatactgttgctttgagtcattcaaagttcttgcacataactatcttgacgtcgttgaatctcatgttcactttnncctcagattcgtcgtttattagaggaaactaatatgactcctgctgatattgctgagaatttgatgcctaagtcttcaaaggaaaatgcagatatttgtttagagagattgattanagctcntcgaaactgcaaaagaggaagcgaaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="128270" stop="127299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127970" g_stop="127599" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E351597" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127970" e_stop="127599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTTATCAGGACTATTGAACTTCATTGATGGTCTATGGTCAGCTATTGGCGGTGAAAGGCTAATCGTCTTCACTACAAACTACGTGGAGAAGCTTGATCCTGCTCTAATCCGGAGGGGGAGAATGGATAAACATATTGTCCTATCATACTGTTGCTTTGAGTCATTCAAAGTTCTTGCACATAACTATCTTGACGTCGTTGAATCTCATGTTCACTTT--CCTCAGATTCGTCGTTTATTAGAGGAAACTAATATGACTCCTGCTGATATTGCTGAGAATTTGATGCCTAAGTCTTCAAAGGAAAATGCAGATATTTGTTTAGAGAGATTGATTAAAGCTC-TCGAAACTGCAAAAGAGGAAGCGAAACTTA</genome_strand>
        <mrna_strand>TAACTTTATCAGGACTATTGAACTTCATTGATGGTCTATGGTCAGCTATTGGCGGTGAAAGGCTAATCGTCTTCACTACAAACTACGTGGAGAAGCTTGATCCTGCTCTAATCCGGAGGGGGAGAATGGATAAACATATTGTCCTATCATACTGTTGCTTTGAGTCATTCAAAGTTCTTGCACATAACTATCTTGACGTCGTTGAATCTCATGTTCACTTTNNCCTCAGATTCGTCGTTTATTAGAGGAAACTAATATGACTCCTGCTGATATTGCTGAGAATTTGATGCCTAAGTCTTCAAAGGAAAATGCAGATATTTGTTTAGAGAGATTGATTANAGCTCNTCGAAACTGCAAAAGAGGAAGCGAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357675" ref_strand="+" ref_description="SGN-E357675 [cTOS-24-K12]">
      <seq>aaaactcctgatagatacaacaggtaaatctattattgtgattgaagacatagattgttcccttgacctaacaggtcaacgagagacgaataagaagaagaaagaagaggaagataaaggaaaaactgaggaagatgccgtcaaggagaagatgaaaaaaggcggagagacgaaagaaaagcaaagtgaggtaactttatcaggactattgaacttcattgatggtctatggtcagctattggcggtgaaaggctaatcgtcttcactacaaactacgtggagaagcttgatcctgctctaatccggagggggagaatggataaacatattgtcctatcatactgttgctttgagtcattcaaagttcttgcacataactatcttgacgtcgttgaatctcatgttcactttcctcagattcgtcgtttattagaggaaactaatatgactcctgctgatattgctgagaatttgatgcctaagtcttcaaaggaaaatgcagatatttgtttagagagattgattaaagctctcgaaactgcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="128461" stop="127314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128161" g_stop="127614" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E357675" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128161" e_stop="127614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTCCTGATAGATACAACAGGTAAATCTATTATTGTGATTGAAGACATAGATTGTTCCCTTGACCTAACAGGTCAACGAGAGACGAATAAGAAGAAGAAAGAAGAGGAAGATAAAGGAAAAACTGAGGAAGATGCCGTCAAGGAGAAGATGAAAAAAGGCGGAGAGACGAAAGAAAAGCAAAGTGAGGTAACTTTATCAGGACTATTGAACTTCATTGATGGTCTATGGTCAGCTATTGGCGGTGAAAGGCTAATCGTCTTCACTACAAACTACGTGGAGAAGCTTGATCCTGCTCTAATCCGGAGGGGGAGAATGGATAAACATATTGTCCTATCATACTGTTGCTTTGAGTCATTCAAAGTTCTTGCACATAACTATCTTGACGTCGTTGAATCTCATGTTCACTTTCCTCAGATTCGTCGTTTATTAGAGGAAACTAATATGACTCCTGCTGATATTGCTGAGAATTTGATGCCTAAGTCTTCAAAGGAAAATGCAGATATTTGTTTAGAGAGATTGATTAAAGCTCTCGAAACTGCAAAAG</genome_strand>
        <mrna_strand>AAAACTCCTGATAGATACAACAGGTAAATCTATTATTGTGATTGAAGACATAGATTGTTCCCTTGACCTAACAGGTCAACGAGAGACGAATAAGAAGAAGAAAGAAGAGGAAGATAAAGGAAAAACTGAGGAAGATGCCGTCAAGGAGAAGATGAAAAAAGGCGGAGAGACGAAAGAAAAGCAAAGTGAGGTAACTTTATCAGGACTATTGAACTTCATTGATGGTCTATGGTCAGCTATTGGCGGTGAAAGGCTAATCGTCTTCACTACAAACTACGTGGAGAAGCTTGATCCTGCTCTAATCCGGAGGGGGAGAATGGATAAACATATTGTCCTATCATACTGTTGCTTTGAGTCATTCAAAGTTCTTGCACATAACTATCTTGACGTCGTTGAATCTCATGTTCACTTTCCTCAGATTCGTCGTTTATTAGAGGAAACTAATATGACTCCTGCTGATATTGCTGAGAATTTGATGCCTAAGTCTTCAAAGGAAAATGCAGATATTTGTTTAGAGAGATTGATTAAAGCTCTCGAAACTGCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458163" ref_strand="+" ref_description="SGN-E458163 [cPRO-4-J12]">
      <seq>gaaacatttagcaagtcaaaagactattatgcaaagattggtaaggcgtggaagcgtggttatcttctttatggtcctccaggaaccggtaaatctagcatgattgctgctatggctaatttcttgaagtatgatatctatgatcttgagctgacatcggttaaggacaataccgagctaagaaaacttctaatagacactacaggtaaatctattattgtgattgaagacattgattgctcccttgaccttacaggtcaacgagagacgaataagaagaagaaagaagaggaagataaaggaaaaaatgaggaagatgccatcaaggagaaaatgaaaaaaggaggagaggtgaaagaaaagcaaagtgaggtaactttatctggacttttgaacttcattgatggtctatggtcagctattggcggtgaaaggcttatcgtctttactaccaactatgtggagaagcttgatcctgctctaattaggagggggaggatggataaacatattgtcctatcctattgttgctttgagtcattcaaagttcttgcacataactatcttgacgtcgttgaatctcatgttcactttcctgagattcgtcgtttattggaggaaactaatatgactcctgctgatattgctgagaatttgatgcctaagtcttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="128643" stop="127371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128343" g_stop="127671" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E458163" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128343" e_stop="127671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACATTTAGCAAGTCAAAAGACTATTACGCAAAGATTGGTAAGGCGTGGAAGCGTGGTTATCTTCTTTATGGTCCTCCAGGAACCGGTAAATCTAGCATGATTGCTGCTATGGCTAATTACTTGAAGTATGACGTCTATGATCTTGAGCTGACATCGGTTAAGGACAATACCGAGCTAAGAAAACTCCTGATAGATACAACAGGTAAATCTATTATTGTGATTGAAGACATAGATTGTTCCCTTGACCTAACAGGTCAACGAGAGACGAATAAGAAGAAGAAAGAAGAGGAAGATAAAGGAAAAACTGAGGAAGATGCCGTCAAGGAGAAGATGAAAAAAGGCGGAGAGACGAAAGAAAAGCAAAGTGAGGTAACTTTATCAGGACTATTGAACTTCATTGATGGTCTATGGTCAGCTATTGGCGGTGAAAGGCTAATCGTCTTCACTACAAACTACGTGGAGAAGCTTGATCCTGCTCTAATCCGGAGGGGGAGAATGGATAAACATATTGTCCTATCATACTGTTGCTTTGAGTCATTCAAAGTTCTTGCACATAACTATCTTGACGTCGTTGAATCTCATGTTCACTTTCCTCAGATTCGTCGTTTATTAGAGGAAACTAATATGACTCCTGCTGATATTGCTGAGAATTTGATGCCTAAGTCTTCAA</genome_strand>
        <mrna_strand>GAAACATTTAGCAAGTCAAAAGACTATTATGCAAAGATTGGTAAGGCGTGGAAGCGTGGTTATCTTCTTTATGGTCCTCCAGGAACCGGTAAATCTAGCATGATTGCTGCTATGGCTAATTTCTTGAAGTATGATATCTATGATCTTGAGCTGACATCGGTTAAGGACAATACCGAGCTAAGAAAACTTCTAATAGACACTACAGGTAAATCTATTATTGTGATTGAAGACATTGATTGCTCCCTTGACCTTACAGGTCAACGAGAGACGAATAAGAAGAAGAAAGAAGAGGAAGATAAAGGAAAAAATGAGGAAGATGCCATCAAGGAGAAAATGAAAAAAGGAGGAGAGGTGAAAGAAAAGCAAAGTGAGGTAACTTTATCTGGACTTTTGAACTTCATTGATGGTCTATGGTCAGCTATTGGCGGTGAAAGGCTTATCGTCTTTACTACCAACTATGTGGAGAAGCTTGATCCTGCTCTAATTAGGAGGGGGAGGATGGATAAACATATTGTCCTATCCTATTGTTGCTTTGAGTCATTCAAAGTTCTTGCACATAACTATCTTGACGTCGTTGAATCTCATGTTCACTTTCCTGAGATTCGTCGTTTATTGGAGGAAACTAATATGACTCCTGCTGATATTGCTGAGAATTTGATGCCTAAGTCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576194" ref_strand="+" ref_description="SGN-E576194 [59374]">
      <seq>caaaaaccagccagcagacagacaatatctttttatagggaggatgagaagaggtatttcaagctaaaatttcacagaaagaatcgcgaccttatcacaaattcatacttgaagtatgtgttggatgaaggaaaggcgatatctgtgaaagaacgacagcgaaagctgtacacaaacaataagggagatggaggtggttatagatacaggggaggaaggatgtggagtggagtagtatttgagcatccgtcaacatttgatactctagctatggatccaaacaagaagcaagagattatagatgatctcgaaacatttagcaagtcaaaagactactatgcaaagattggcaaggcgtggaagcgtggttatcttctttatggtcctccaggaaccggtaaatctagcatgattgctgctatggctaatttcttgaagtatgacgtctatgatcttgagctgacatcggttaaggacaataccgagctaagaaaactgctgatagatacaacaggtaaatctattattgtgattgaagatatagattgttcccttgaccttacaggtcaacgagagacgaataagaagaagaaagaagaggaggataaaggaaaaactgaggaagatgccgtcaaggagaagatgaaaaacggaggagaggttgaaagaaaagcaagtgaggtaacttatctggacttttgaactacattggatgtctatggtcacaggctattggcgggtgaaaggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="128951" stop="127693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128652" g_stop="127927" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E576194" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128652" e_stop="127927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACCAGCGAGCAGGCAGACAATATCTTTGTATAAGGAGGATGAGAAGAGATATTTCAAGCTAAAATTTCACAAAAAGAATCGCGACCTTGTCACAAATTCATACTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAACGACAGAGAAAGCTGTACACGAACAATAAGGGAGATGGAGGTGGTTATAGATACAGGGGAGGGAGGATGTGGAGTGGAGTAGTATTCGAGCATCCGTCAACATTTGATACTCTAGCTATGGATCCAAACAAGAAGCAAGAGATCATAGATGATCTCGAAACATTTAGCAAGTCAAAAGACTATTACGCAAAGATTGGTAAGGCGTGGAAGCGTGGTTATCTTCTTTATGGTCCTCCAGGAACCGGTAAATCTAGCATGATTGCTGCTATGGCTAATTACTTGAAGTATGACGTCTATGATCTTGAGCTGACATCGGTTAAGGACAATACCGAGCTAAGAAAACTCCTGATAGATACAACAGGTAAATCTATTATTGTGATTGAAGACATAGATTGTTCCCTTGACCTAACAGGTCAACGAGAGACGAATAAGAAGAAGAAAGAAGAGGAAGATAAAGGAAAAACTGAGGAAGATGCCGTCAAGGAGAAGATGAAAAAAGGCGGAGA-GACGAAAGAAAAGCAAAGTGAGGTAACTTTATCAGGACTATTGAACTTCATTGATGGTCTATGGTCA</genome_strand>
        <mrna_strand>CAAAAACCAGCCAGCAGACAGACAATATCTTTTTATAGGGAGGATGAGAAGAGGTATTTCAAGCTAAAATTTCACAGAAAGAATCGCGACCTTATCACAAATTCATACTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAACGACAGCGAAAGCTGTACACAAACAATAAGGGAGATGGAGGTGGTTATAGATACAGGGGAGGAAGGATGTGGAGTGGAGTAGTATTTGAGCATCCGTCAACATTTGATACTCTAGCTATGGATCCAAACAAGAAGCAAGAGATTATAGATGATCTCGAAACATTTAGCAAGTCAAAAGACTACTATGCAAAGATTGGCAAGGCGTGGAAGCGTGGTTATCTTCTTTATGGTCCTCCAGGAACCGGTAAATCTAGCATGATTGCTGCTATGGCTAATTTCTTGAAGTATGACGTCTATGATCTTGAGCTGACATCGGTTAAGGACAATACCGAGCTAAGAAAACTGCTGATAGATACAACAGGTAAATCTATTATTGTGATTGAAGATATAGATTGTTCCCTTGACCTTACAGGTCAACGAGAGACGAATAAGAAGAAGAAAGAAGAGGAGGATAAAGGAAAAACTGAGGAAGATGCCGTCAAGGAGAAGATGAAAAACGGAGGAGAGGTTGAAAGAAAAGC-AAGTGAGGTAAC-TTATCTGGACTTTTGAACTACATTGGATGTCTATGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351717" ref_strand="+" ref_description="SGN-E351717 [cTOS-8-B19]">
      <seq>catgattgctgctatggctaattacttgaagtatgacgtctatgatcttgagctgacatcggttaaggacaataccgagctaagaaaactcctgatagatacaacaggtaaatctattattgtgattgaagacatagattgttcccttgacctaacaggtcaacgagagacgaataagaagaagaaagaagaggaagataaaggaaaaactgaggaagatgccgtcaaggagaagatgaaaaaagggcggagagacgaaagaaaagcaaagtgaggtaactttatcaggactattgaacttcattgatggtctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="128545" stop="127631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128245" g_stop="127931" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E351717" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128245" e_stop="127931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGATTGCTGCTATGGCTAATTACTTGAAGTATGACGTCTATGATCTTGAGCTGACATCGGTTAAGGACAATACCGAGCTAAGAAAACTCCTGATAGATACAACAGGTAAATCTATTATTGTGATTGAAGACATAGATTGTTCCCTTGACCTAACAGGTCAACGAGAGACGAATAAGAAGAAGAAAGAAGAGGAAGATAAAGGAAAAACTGAGGAAGATGCCGTCAAGGAGAAGATGAAAAAA-GGCGGAGAGACGAAAGAAAAGCAAAGTGAGGTAACTTTATCAGGACTATTGAACTTCATTGATGGTCTATG</genome_strand>
        <mrna_strand>CATGATTGCTGCTATGGCTAATTACTTGAAGTATGACGTCTATGATCTTGAGCTGACATCGGTTAAGGACAATACCGAGCTAAGAAAACTCCTGATAGATACAACAGGTAAATCTATTATTGTGATTGAAGACATAGATTGTTCCCTTGACCTAACAGGTCAACGAGAGACGAATAAGAAGAAGAAAGAAGAGGAAGATAAAGGAAAAACTGAGGAAGATGCCGTCAAGGAGAAGATGAAAAAAGGGCGGAGAGACGAAAGAAAAGCAAAGTGAGGTAACTTTATCAGGACTATTGAACTTCATTGATGGTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572431" ref_strand="+" ref_description="SGN-E572431 [31584]">
      <seq>atttgagcatccgtcaacatttgatactctagctatggatccaaacaagaagcaagagattatagatgatctcgaaacatttagcaagtcaaaagactattatgcaaagattggtaaggcgtggaagcgtggttatcttctttatggtcctccaggaaccggtaaatctagcatgattgctgctatggctaatttcttgaagtatgatatctatgatcttgagctgacatcggttaaggacaataccgagctaagaaaacttctaatagacactacaggtaaatctattattgtgattgaagacattgattgctcccttgaccttacaggtcaacgagagacgaataagaagaagaaagaagaggaagataaaggaaaaaatgaggaagatgccatcaaggagaaaatgaaaaaaggaggagaggtgaaagaaaagcaaagtgaggtaactttatctggacttttgaacttcattgatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="128716" stop="127636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128416" g_stop="127936" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E572431" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128416" e_stop="127936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGAGCATCCGTCAACATTTGATACTCTAGCTATGGATCCAAACAAGAAGCAAGAGATCATAGATGATCTCGAAACATTTAGCAAGTCAAAAGACTATTACGCAAAGATTGGTAAGGCGTGGAAGCGTGGTTATCTTCTTTATGGTCCTCCAGGAACCGGTAAATCTAGCATGATTGCTGCTATGGCTAATTACTTGAAGTATGACGTCTATGATCTTGAGCTGACATCGGTTAAGGACAATACCGAGCTAAGAAAACTCCTGATAGATACAACAGGTAAATCTATTATTGTGATTGAAGACATAGATTGTTCCCTTGACCTAACAGGTCAACGAGAGACGAATAAGAAGAAGAAAGAAGAGGAAGATAAAGGAAAAACTGAGGAAGATGCCGTCAAGGAGAAGATGAAAAAAGGCGGAGAGACGAAAGAAAAGCAAAGTGAGGTAACTTTATCAGGACTATTGAACTTCATTGATGGT</genome_strand>
        <mrna_strand>ATTTGAGCATCCGTCAACATTTGATACTCTAGCTATGGATCCAAACAAGAAGCAAGAGATTATAGATGATCTCGAAACATTTAGCAAGTCAAAAGACTATTATGCAAAGATTGGTAAGGCGTGGAAGCGTGGTTATCTTCTTTATGGTCCTCCAGGAACCGGTAAATCTAGCATGATTGCTGCTATGGCTAATTTCTTGAAGTATGATATCTATGATCTTGAGCTGACATCGGTTAAGGACAATACCGAGCTAAGAAAACTTCTAATAGACACTACAGGTAAATCTATTATTGTGATTGAAGACATTGATTGCTCCCTTGACCTTACAGGTCAACGAGAGACGAATAAGAAGAAGAAAGAAGAGGAAGATAAAGGAAAAAATGAGGAAGATGCCATCAAGGAGAAAATGAAAAAAGGAGGAGAGGTGAAAGAAAAGCAAAGTGAGGTAACTTTATCTGGACTTTTGAACTTCATTGATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457002" ref_strand="+" ref_description="SGN-E457002 [cPRO-2-G11]">
      <seq>agataatatctcttcatagggaggatgagaagaggtatttcaagctaaaatttcacaaaaagaatcgcgaccttatcacaaattcatacttgaagtatgtgttggatgaaggaaaggcgatatctgtgaaagaacgacagcgaaagctgtacacaaacaataagggagatggaggtggttatagatacaggggaggaaggatgtggagtggagtagtatttgagcatccgtcaacatttgatactctagctatggatccaaacaagaagcaagagattatagatgatctcgaaacatttagcaagtcaaaagactactatgcaaagattggcaaggcgtggaagcgtggttatcttctttatggacctccaagaaccggtaaatctagcatgattgctgctatggctaatctcttgaagtatgacgtctatgatcttgagctgacatcggttaacgacaataccgagctaagaaaactgctgatagatacaacaggtaaatctattattgtgattgacgatatagattgttcccttgaccttacaggtcaacgagagacgaataagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="128933" stop="127766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128633" g_stop="128066" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E457002" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128633" e_stop="128066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAATATCTTTGTATAAGGAGGATGAGAAGAGATATTTCAAGCTAAAATTTCACAAAAAGAATCGCGACCTTGTCACAAATTCATACTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAACGACAGAGAAAGCTGTACACGAACAATAAGGGAGATGGAGGTGGTTATAGATACAGGGGAGGGAGGATGTGGAGTGGAGTAGTATTCGAGCATCCGTCAACATTTGATACTCTAGCTATGGATCCAAACAAGAAGCAAGAGATCATAGATGATCTCGAAACATTTAGCAAGTCAAAAGACTATTACGCAAAGATTGGTAAGGCGTGGAAGCGTGGTTATCTTCTTTATGGTCCTCCAGGAACCGGTAAATCTAGCATGATTGCTGCTATGGCTAATTACTTGAAGTATGACGTCTATGATCTTGAGCTGACATCGGTTAAGGACAATACCGAGCTAAGAAAACTCCTGATAGATACAACAGGTAAATCTATTATTGTGATTGAAGACATAGATTGTTCCCTTGACCTAACAGGTCAACGAGAGACGAATAAGAA</genome_strand>
        <mrna_strand>AGATAATATCTCTTCATAGGGAGGATGAGAAGAGGTATTTCAAGCTAAAATTTCACAAAAAGAATCGCGACCTTATCACAAATTCATACTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAACGACAGCGAAAGCTGTACACAAACAATAAGGGAGATGGAGGTGGTTATAGATACAGGGGAGGAAGGATGTGGAGTGGAGTAGTATTTGAGCATCCGTCAACATTTGATACTCTAGCTATGGATCCAAACAAGAAGCAAGAGATTATAGATGATCTCGAAACATTTAGCAAGTCAAAAGACTACTATGCAAAGATTGGCAAGGCGTGGAAGCGTGGTTATCTTCTTTATGGACCTCCAAGAACCGGTAAATCTAGCATGATTGCTGCTATGGCTAATCTCTTGAAGTATGACGTCTATGATCTTGAGCTGACATCGGTTAACGACAATACCGAGCTAAGAAAACTGCTGATAGATACAACAGGTAAATCTATTATTGTGATTGACGATATAGATTGTTCCCTTGACCTTACAGGTCAACGAGAGACGAATAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209760" ref_strand="+" ref_description="SGN-E209760 [cLEC-52-O8]">
      <seq>taaactcgtgaactatttctatccttatatgcacattatcttttatgaacttgaaactgaagggtggtttgagcggagcaaagcttacgtatcgattgaaaggtacctaagcaagagctcgagcacacaagctaagcgtctcaaagccaattcggtgaaggatggtcaatcgcttgtcctaaccatggatgatcatgaggagataacggatgaatataaaggcgagaaggtttggtggatttcgagcaaaaaaccagcgagcaggcagacaatatctttgtataaggaggatgagaagagatatttcaagctaaaatttcacaaaaagaatcgcgaccttgtcacaaattcatacttgaagtatgtgttggatgaaggaaaggcgatatctgtgaaagaacgacagagaaagctgtacacgaacaataagggagatggaggtggttatagatacaggggagggaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="129199" stop="128131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128899" g_stop="128431" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E209760" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128899" e_stop="128431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTCGTGAACTATTTCTATCCTTATATGCACATTATCTTTTATGAACTTGAAACTGAAGGGTGGTTTGAGCGGAGCAAAGCTTACGTATCGATTGAAAGGTACCTAAGCAAGAGCTCGAGCACACAAGCTAAGCGTCTCAAAGCCAATTCGGTGAAGGATGGTCAATCGCTTGTCCTAACCATGGATGATCATGAGGAGATAACGGATGAATATAAAGGCGAGAAGGTTTGGTGGATTTCGAGCAAAAAACCAGCGAGCAGGCAGACAATATCTTTGTATAAGGAGGATGAGAAGAGATATTTCAAGCTAAAATTTCACAAAAAGAATCGCGACCTTGTCACAAATTCATACTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAACGACAGAGAAAGCTGTACACGAACAATAAGGGAGATGGAGGTGGTTATAGATACAGGGGAGGGAGGATG</genome_strand>
        <mrna_strand>TAAACTCGTGAACTATTTCTATCCTTATATGCACATTATCTTTTATGAACTTGAAACTGAAGGGTGGTTTGAGCGGAGCAAAGCTTACGTATCGATTGAAAGGTACCTAAGCAAGAGCTCGAGCACACAAGCTAAGCGTCTCAAAGCCAATTCGGTGAAGGATGGTCAATCGCTTGTCCTAACCATGGATGATCATGAGGAGATAACGGATGAATATAAAGGCGAGAAGGTTTGGTGGATTTCGAGCAAAAAACCAGCGAGCAGGCAGACAATATCTTTGTATAAGGAGGATGAGAAGAGATATTTCAAGCTAAAATTTCACAAAAAGAATCGCGACCTTGTCACAAATTCATACTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAACGACAGAGAAAGCTGTACACGAACAATAAGGGAGATGGAGGTGGTTATAGATACAGGGGAGGGAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291106" ref_strand="+" ref_description="SGN-E291106 [cLET-8-M10]">
      <seq>tttggtggatttcgagcaaaaaaaccagcgagcaggcagacaatatctttgtataaggaggatgagaagagatatttcaagctaaaatttcacaaaaagaatcgcgaccttgtcacaaattcatacttgaagtatgtgttggatgaaggaaaggcgatatctgtgaaagaacgacagagaaagctgtacacgaacaataagggagatggaggtggttatagataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="128969" stop="128145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128669" g_stop="128445" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E291106" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128669" e_stop="128445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTGGATTTCGAGC-AAAAAACCAGCGAGCAGGCAGACAATATCTTTGTATAAGGAGGATGAGAAGAGATATTTCAAGCTAAAATTTCACAAAAAGAATCGCGACCTTGTCACAAATTCATACTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAACGACAGAGAAAGCTGTACACGAACAATAAGGGAGATGGAGGTGGTTATAGATACA</genome_strand>
        <mrna_strand>TTTGGTGGATTTCGAGCAAAAAAACCAGCGAGCAGGCAGACAATATCTTTGTATAAGGAGGATGAGAAGAGATATTTCAAGCTAAAATTTCACAAAAAGAATCGCGACCTTGTCACAAATTCATACTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAACGACAGAGAAAGCTGTACACGAACAATAAGGGAGATGGAGGTGGTTATAGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444226" ref_strand="+" ref_description="SGN-E444226 [cSTA-42-K17]">
      <seq>aggtacccttagcaagaactcgagcactcaggctaagcgtctcaaagccaaccgcggtgaaggatggtcaatcgcttgttctaaccatggatgatcatgaggagataatcgatgaatataaaggcgagaaggtttggtggatttcgagccaaaaaccagccagcagacagataatatctcttcatagggaggatgagaagaggtatttcaagctaaaatttcacaaaaagaatcgcgaccttatcaccaaattcataccttgaagtatgtgttggatgaaggaaaggcgatatctgtgaaagaaccacagcgaaagctgtaccccaaccataagggagatggaggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="129099" stop="128157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128799" g_stop="128457" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E444226" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128799" e_stop="128457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTA-CCTAAGCAAGAGCTCGAGCACACAAGCTAAGCGTCTCAAAGCCAA-TTCGGTGAAGGATGGTCAATCGCTTGTCCTAACCATGGATGATCATGAGGAGATAACGGATGAATATAAAGGCGAGAAGGTTTGGTGGATTTCGAGCAAAAAACCAGCGAGCAGGCAGACAATATCTTTGTATAAGGAGGATGAGAAGAGATATTTCAAGCTAAAATTTCACAAAAAGAATCGCGACCTTGTCA-CAAATTCATA-CTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAACGACAGAGAAAGCTGTACACGAACAATAAGGGAGATGGAGGTG</genome_strand>
        <mrna_strand>AGGTACCCTTAGCAAGAACTCGAGCACTCAGGCTAAGCGTCTCAAAGCCAACCGCGGTGAAGGATGGTCAATCGCTTGTTCTAACCATGGATGATCATGAGGAGATAATCGATGAATATAAAGGCGAGAAGGTTTGGTGGATTTCGAGCCAAAAACCAGCCAGCAGACAGATAATATCTCTTCATAGGGAGGATGAGAAGAGGTATTTCAAGCTAAAATTTCACAAAAAGAATCGCGACCTTATCACCAAATTCATACCTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAACCACAGCGAAAGCTGTACCCCAACCATAAGGGAGATGGAGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201905" ref_strand="+" ref_description="SGN-E201905 [cLEC-18-K23]">
      <seq>gatgatgcaagatctatggactcaattgggtcctaccattgcagccatcatgttcacctggaccatgtaccagaactacttccctcacgaacttcgcggtcatattaggaggtataccgataaactcgtgaactatttctatccttatatgcacattatcttttatgaacttgaaactgaagggtggtttgagcggagcaaagcttacgtatcgattgaaaggtacctaagcaagagctcgagcacacaagctaagcgtctcaaagccaattcggtgaaggatggtcaatcgcttgtcctaaccatggatgatcatgaggagataacggatgaatataaaggcgagaaggtttggtggatttcgagcaaaaaaccagcgagcaggcagacaatatctttgtataaggaggatgagaagagatatttcaagctaaaatttcacaaaaagaatcgcgaccttgtcacaaattcatacttgaagtatgtgttggatgaaggaaaggcgatatctgtgaaagaacgacagagaaagctgttcacgaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="129319" stop="128173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129019" g_stop="128473" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E201905" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129019" e_stop="128473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATGCAAGATCTATGGACTCAATTGGGTCCTACCATTGCAGCCATCATGTTCACCTGGACCATGTACCAGAACTACTTCCCTCACGAACTTCGCGGTCATATTAGGAGGTATACCGATAAACTCGTGAACTATTTCTATCCTTATATGCACATTATCTTTTATGAACTTGAAACTGAAGGGTGGTTTGAGCGGAGCAAAGCTTACGTATCGATTGAAAGGTACCTAAGCAAGAGCTCGAGCACACAAGCTAAGCGTCTCAAAGCCAATTCGGTGAAGGATGGTCAATCGCTTGTCCTAACCATGGATGATCATGAGGAGATAACGGATGAATATAAAGGCGAGAAGGTTTGGTGGATTTCGAGCAAAAAACCAGCGAGCAGGCAGACAATATCTTTGTATAAGGAGGATGAGAAGAGATATTTCAAGCTAAAATTTCACAAAAAGAATCGCGACCTTGTCACAAATTCATACTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAACGACAGAGAAAGCTGTACACGAACAAT</genome_strand>
        <mrna_strand>GATGATGCAAGATCTATGGACTCAATTGGGTCCTACCATTGCAGCCATCATGTTCACCTGGACCATGTACCAGAACTACTTCCCTCACGAACTTCGCGGTCATATTAGGAGGTATACCGATAAACTCGTGAACTATTTCTATCCTTATATGCACATTATCTTTTATGAACTTGAAACTGAAGGGTGGTTTGAGCGGAGCAAAGCTTACGTATCGATTGAAAGGTACCTAAGCAAGAGCTCGAGCACACAAGCTAAGCGTCTCAAAGCCAATTCGGTGAAGGATGGTCAATCGCTTGTCCTAACCATGGATGATCATGAGGAGATAACGGATGAATATAAAGGCGAGAAGGTTTGGTGGATTTCGAGCAAAAAACCAGCGAGCAGGCAGACAATATCTTTGTATAAGGAGGATGAGAAGAGATATTTCAAGCTAAAATTTCACAAAAAGAATCGCGACCTTGTCACAAATTCATACTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAACGACAGAGAAAGCTGTTCACGAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442109" ref_strand="+" ref_description="SGN-E442109 [cSTA-32-A7]">
      <seq>cttcaagatgatgcaagatgtttggactcagttgggtccaaccattgcagcaatcatgttcacctggaccatgtaccagaactactttcctcacgaacttcgtggtcatattaggaggtataccgataaactcgttagctatttctatccttatatgcacattatcttttatgaacttgaaactgaagggtggtttgagaggagcaaagcttatgtagcaattgaaaggtaccttagcaagaactcgagcacacaagctaagcgtctcaaagccaacgcggtgaaggatggtcaatctcttgtcctaaccatggatgatcatgaggagataaccgatgaatataaaggcgagaaggtttggtggatttcgagccaaaagctagccagcagacagataatatctttaaatagggaggatgagaagagatatttcaagctaaaatttcacaaaaagaatcgcgacctcatcacaaattcatacttgaagtatgtgttggatgaaggaaaggcgatatctgtgaaagagcgacagagaaagctgtacacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="129325" stop="128177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129025" g_stop="128477" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E442109" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129025" e_stop="128477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAGATGATGCAAGATCTATGGACTCAATTGGGTCCTACCATTGCAGCCATCATGTTCACCTGGACCATGTACCAGAACTACTTCCCTCACGAACTTCGCGGTCATATTAGGAGGTATACCGATAAACTCGTGAACTATTTCTATCCTTATATGCACATTATCTTTTATGAACTTGAAACTGAAGGGTGGTTTGAGCGGAGCAAAGCTTACGTATCGATTGAAAGGTACCTAAGCAAGAGCTCGAGCACACAAGCTAAGCGTCTCAAAGCCAATTCGGTGAAGGATGGTCAATCGCTTGTCCTAACCATGGATGATCATGAGGAGATAACGGATGAATATAAAGGCGAGAAGGTTTGGTGGATTTCGAGCAAAAAACCAGCGAGCAGGCAGACAATATCTTTGTATAAGGAGGATGAGAAGAGATATTTCAAGCTAAAATTTCACAAAAAGAATCGCGACCTTGTCACAAATTCATACTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAACGACAGAGAAAGCTGTACACGAA</genome_strand>
        <mrna_strand>CTTCAAGATGATGCAAGATGTTTGGACTCAGTTGGGTCCAACCATTGCAGCAATCATGTTCACCTGGACCATGTACCAGAACTACTTTCCTCACGAACTTCGTGGTCATATTAGGAGGTATACCGATAAACTCGTTAGCTATTTCTATCCTTATATGCACATTATCTTTTATGAACTTGAAACTGAAGGGTGGTTTGAGAGGAGCAAAGCTTATGTAGCAATTGAAAGGTACCTTAGCAAGAACTCGAGCACACAAGCTAAGCGTCTCAAAGCCAACGCGGTGAAGGATGGTCAATCTCTTGTCCTAACCATGGATGATCATGAGGAGATAACCGATGAATATAAAGGCGAGAAGGTTTGGTGGATTTCGAGCCAAAAGCTAGCCAGCAGACAGATAATATCTTTAAATAGGGAGGATGAGAAGAGATATTTCAAGCTAAAATTTCACAAAAAGAATCGCGACCTCATCACAAATTCATACTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAGCGACAGAGAAAGCTGTACACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337683" ref_strand="+" ref_description="SGN-E337683 [cTOE-17-L17]">
      <seq>ttgaatactccaattaacttcaagatgatgcaagatctatggactcaattgggtcctaccattgcagccatcatgttcacctggaccatgtaccagaactacttccctcacgaacttcgcggtcatattaggaggtataccgataaactcgtgaactatttctatccttatatgcacattatcttttatgaacttgaaactgaagggtggtttgagcggagcaaagcttacgtatcgattgaaaggtacctaagcaagagctcgagcacacaagctaagcgtctcaaagccaattcggtgaaggatggtcaatcgcttgtcctaaccatggatgatcatgaggagataacggatgaatataaaggcgagaaggtttggtggatttcgagcaaaaaaccagcgagcaggcagacaatatctttgtataaggaggatgagaagagatatttcaagctaaaatttcacaaaaagaatcgcgaccttgtcacaaattcatacttgaagtatgtgttggatgaaggaaaggcgatatctgtgaaagaacgacagagaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="129342" stop="128186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129042" g_stop="128486" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E337683" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129042" e_stop="128486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATACTCCAATTAACTTCAAGATGATGCAAGATCTATGGACTCAATTGGGTCCTACCATTGCAGCCATCATGTTCACCTGGACCATGTACCAGAACTACTTCCCTCACGAACTTCGCGGTCATATTAGGAGGTATACCGATAAACTCGTGAACTATTTCTATCCTTATATGCACATTATCTTTTATGAACTTGAAACTGAAGGGTGGTTTGAGCGGAGCAAAGCTTACGTATCGATTGAAAGGTACCTAAGCAAGAGCTCGAGCACACAAGCTAAGCGTCTCAAAGCCAATTCGGTGAAGGATGGTCAATCGCTTGTCCTAACCATGGATGATCATGAGGAGATAACGGATGAATATAAAGGCGAGAAGGTTTGGTGGATTTCGAGCAAAAAACCAGCGAGCAGGCAGACAATATCTTTGTATAAGGAGGATGAGAAGAGATATTTCAAGCTAAAATTTCACAAAAAGAATCGCGACCTTGTCACAAATTCATACTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAACGACAGAGAAAGCT</genome_strand>
        <mrna_strand>TTGAATACTCCAATTAACTTCAAGATGATGCAAGATCTATGGACTCAATTGGGTCCTACCATTGCAGCCATCATGTTCACCTGGACCATGTACCAGAACTACTTCCCTCACGAACTTCGCGGTCATATTAGGAGGTATACCGATAAACTCGTGAACTATTTCTATCCTTATATGCACATTATCTTTTATGAACTTGAAACTGAAGGGTGGTTTGAGCGGAGCAAAGCTTACGTATCGATTGAAAGGTACCTAAGCAAGAGCTCGAGCACACAAGCTAAGCGTCTCAAAGCCAATTCGGTGAAGGATGGTCAATCGCTTGTCCTAACCATGGATGATCATGAGGAGATAACGGATGAATATAAAGGCGAGAAGGTTTGGTGGATTTCGAGCAAAAAACCAGCGAGCAGGCAGACAATATCTTTGTATAAGGAGGATGAGAAGAGATATTTCAAGCTAAAATTTCACAAAAAGAATCGCGACCTTGTCACAAATTCATACTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAACGACAGAGAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206456" ref_strand="+" ref_description="SGN-E206456 [cLEC-23-E14]">
      <seq>gaatactccaattaacttcaagatgatgcaagatctatggactcaattgggtcctaccattgcagccatcatgttcacctggaccatgtaccagaactacttccctcacgaacttcgcggtcatattaggaggtataccgataaactcgtgaactatttctatccttatatgcacattatcttttatgaacttgaaactgaagggtggtttgagcggagcaaagcttacgtatcgattgaaaggtacctaagcaagagctcgagcacacaagctaagcgtctcaaagccaattcggtgaaggatggtcaatcgcttgtcctaaccatggatgatcatgaggagataacggatgaatataaaggcgagaaggtttggtggatttcgagcaaaaaaccagcgagcaggcagacaatatctttgtataaggaggatgagaagagatatttcaagctaaaatttcacaaaaagaatcgcgaccttgtcacaaattcatacttgaagtatgtgttggatgaaggaaaggcgatatctgtgaaagaacgacagagaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="129340" stop="128187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129040" g_stop="128487" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E206456" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129040" e_stop="128487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATACTCCAATTAACTTCAAGATGATGCAAGATCTATGGACTCAATTGGGTCCTACCATTGCAGCCATCATGTTCACCTGGACCATGTACCAGAACTACTTCCCTCACGAACTTCGCGGTCATATTAGGAGGTATACCGATAAACTCGTGAACTATTTCTATCCTTATATGCACATTATCTTTTATGAACTTGAAACTGAAGGGTGGTTTGAGCGGAGCAAAGCTTACGTATCGATTGAAAGGTACCTAAGCAAGAGCTCGAGCACACAAGCTAAGCGTCTCAAAGCCAATTCGGTGAAGGATGGTCAATCGCTTGTCCTAACCATGGATGATCATGAGGAGATAACGGATGAATATAAAGGCGAGAAGGTTTGGTGGATTTCGAGCAAAAAACCAGCGAGCAGGCAGACAATATCTTTGTATAAGGAGGATGAGAAGAGATATTTCAAGCTAAAATTTCACAAAAAGAATCGCGACCTTGTCACAAATTCATACTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAACGACAGAGAAAGC</genome_strand>
        <mrna_strand>GAATACTCCAATTAACTTCAAGATGATGCAAGATCTATGGACTCAATTGGGTCCTACCATTGCAGCCATCATGTTCACCTGGACCATGTACCAGAACTACTTCCCTCACGAACTTCGCGGTCATATTAGGAGGTATACCGATAAACTCGTGAACTATTTCTATCCTTATATGCACATTATCTTTTATGAACTTGAAACTGAAGGGTGGTTTGAGCGGAGCAAAGCTTACGTATCGATTGAAAGGTACCTAAGCAAGAGCTCGAGCACACAAGCTAAGCGTCTCAAAGCCAATTCGGTGAAGGATGGTCAATCGCTTGTCCTAACCATGGATGATCATGAGGAGATAACGGATGAATATAAAGGCGAGAAGGTTTGGTGGATTTCGAGCAAAAAACCAGCGAGCAGGCAGACAATATCTTTGTATAAGGAGGATGAGAAGAGATATTTCAAGCTAAAATTTCACAAAAAGAATCGCGACCTTGTCACAAATTCATACTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAACGACAGAGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299605" ref_strand="+" ref_description="SGN-E299605 [cLEW-20-C10]">
      <seq>aagatgatgcaagatctatggactcaattgggtcctaccattgcagccatcatgttcacctggaccatgtaccagaactacttccctcacgaacttcgcggtcatattaggaggtataccgataaactcgtgaactatttctatccttatatgcacattatcttttatgaacttgaaactgaagggtggtttgagcggagcaaagcttacgtatcgattgaaaggtacctaagcaagagctcgagcacacaagctaagcgtctcaaagccaattcggtgaaggatggtcaatcgcttgtcctaaccatggatgatcatgaggagataacggatgaatataaaggcgagaaggtttggtggatttcgagcaaaaaaccagcgagcaggcagacaatatctttgtataaggaggatgagaagagatatttcaagctaaaatttcacaaaaagaatcgcgaccttgtcacaaattcatacttgaagtatgtgttggatgaaggaaaggcgatatctgtgaaagaacgacagagaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="129321" stop="128187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129021" g_stop="128487" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E299605" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129021" e_stop="128487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGATGCAAGATCTATGGACTCAATTGGGTCCTACCATTGCAGCCATCATGTTCACCTGGACCATGTACCAGAACTACTTCCCTCACGAACTTCGCGGTCATATTAGGAGGTATACCGATAAACTCGTGAACTATTTCTATCCTTATATGCACATTATCTTTTATGAACTTGAAACTGAAGGGTGGTTTGAGCGGAGCAAAGCTTACGTATCGATTGAAAGGTACCTAAGCAAGAGCTCGAGCACACAAGCTAAGCGTCTCAAAGCCAATTCGGTGAAGGATGGTCAATCGCTTGTCCTAACCATGGATGATCATGAGGAGATAACGGATGAATATAAAGGCGAGAAGGTTTGGTGGATTTCGAGCAAAAAACCAGCGAGCAGGCAGACAATATCTTTGTATAAGGAGGATGAGAAGAGATATTTCAAGCTAAAATTTCACAAAAAGAATCGCGACCTTGTCACAAATTCATACTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAACGACAGAGAAAGC</genome_strand>
        <mrna_strand>AAGATGATGCAAGATCTATGGACTCAATTGGGTCCTACCATTGCAGCCATCATGTTCACCTGGACCATGTACCAGAACTACTTCCCTCACGAACTTCGCGGTCATATTAGGAGGTATACCGATAAACTCGTGAACTATTTCTATCCTTATATGCACATTATCTTTTATGAACTTGAAACTGAAGGGTGGTTTGAGCGGAGCAAAGCTTACGTATCGATTGAAAGGTACCTAAGCAAGAGCTCGAGCACACAAGCTAAGCGTCTCAAAGCCAATTCGGTGAAGGATGGTCAATCGCTTGTCCTAACCATGGATGATCATGAGGAGATAACGGATGAATATAAAGGCGAGAAGGTTTGGTGGATTTCGAGCAAAAAACCAGCGAGCAGGCAGACAATATCTTTGTATAAGGAGGATGAGAAGAGATATTTCAAGCTAAAATTTCACAAAAAGAATCGCGACCTTGTCACAAATTCATACTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAACGACAGAGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204099" ref_strand="+" ref_description="SGN-E204099 [cLEC-27-C3]">
      <seq>ttaacttcaagatgatgcaagatctatggactcaattgggtcctaccattgcagccatcatgttcacctggaccatgtaccagaactacttccctcacgaacttcgcggtcatattaggaggtataccgataaactcgtgaactatttctatccttatatgcacattatcttttatgaacttgaaactgaagggtggtttgagcggagcaaagcttacgtatcgattgaaaggtacctaagcaagagctcgagcacacaagctaagcgtctcaaagccaattcggtgaaggatggtcaatcgcttgtcctaaccatggatgatcatgaggagataacggatgaatataaaggcgagaaggtttggtggatttcgagcaaaaaaccagcgagcaggcagacaatatctttgtataaggaggatgagaagagatatttcaagctaaaatttcacaaaaagaatcgcgaccttgtcacaaattcatacttgaagtatgtgttggatgaaggaaaggcgatatctgtgaaagaacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="129329" stop="128196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129029" g_stop="128496" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E204099" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129029" e_stop="128496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACTTCAAGATGATGCAAGATCTATGGACTCAATTGGGTCCTACCATTGCAGCCATCATGTTCACCTGGACCATGTACCAGAACTACTTCCCTCACGAACTTCGCGGTCATATTAGGAGGTATACCGATAAACTCGTGAACTATTTCTATCCTTATATGCACATTATCTTTTATGAACTTGAAACTGAAGGGTGGTTTGAGCGGAGCAAAGCTTACGTATCGATTGAAAGGTACCTAAGCAAGAGCTCGAGCACACAAGCTAAGCGTCTCAAAGCCAATTCGGTGAAGGATGGTCAATCGCTTGTCCTAACCATGGATGATCATGAGGAGATAACGGATGAATATAAAGGCGAGAAGGTTTGGTGGATTTCGAGCAAAAAACCAGCGAGCAGGCAGACAATATCTTTGTATAAGGAGGATGAGAAGAGATATTTCAAGCTAAAATTTCACAAAAAGAATCGCGACCTTGTCACAAATTCATACTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAACGAC</genome_strand>
        <mrna_strand>TTAACTTCAAGATGATGCAAGATCTATGGACTCAATTGGGTCCTACCATTGCAGCCATCATGTTCACCTGGACCATGTACCAGAACTACTTCCCTCACGAACTTCGCGGTCATATTAGGAGGTATACCGATAAACTCGTGAACTATTTCTATCCTTATATGCACATTATCTTTTATGAACTTGAAACTGAAGGGTGGTTTGAGCGGAGCAAAGCTTACGTATCGATTGAAAGGTACCTAAGCAAGAGCTCGAGCACACAAGCTAAGCGTCTCAAAGCCAATTCGGTGAAGGATGGTCAATCGCTTGTCCTAACCATGGATGATCATGAGGAGATAACGGATGAATATAAAGGCGAGAAGGTTTGGTGGATTTCGAGCAAAAAACCAGCGAGCAGGCAGACAATATCTTTGTATAAGGAGGATGAGAAGAGATATTTCAAGCTAAAATTTCACAAAAAGAATCGCGACCTTGTCACAAATTCATACTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAACGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461198" ref_strand="+" ref_description="SGN-E461198 [cPRO-7-J9]">
      <seq>caagatgatgcaagatgtttggactcagttgggtccaaccattgcagcaatcatgttcatctggaccatgtaccagaactactttcctcacgaacttcgtggtcatattaggaggtataccaataaactcgttagctatttctatccttatatgcacattatcttttatgaacttgaaactgaagggtggtttgagaggagcaaagcttatgtagcaattgaaaggtaccttagcaagaactcgagcacacaagctaagcgtctcaaagccaacgcggtgaaggatggtcaatctcttgtcctaaccatggatgatcatgaggagataaccgatgaatataaaggcgagaaggtttggtggatttctagccaaaaaccagcccgcagacagacaatatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="129322" stop="128321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129022" g_stop="128620" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E461198" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129022" e_stop="128620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATGATGCAAGATCTATGGACTCAATTGGGTCCTACCATTGCAGCCATCATGTTCACCTGGACCATGTACCAGAACTACTTCCCTCACGAACTTCGCGGTCATATTAGGAGGTATACCGATAAACTCGTGAACTATTTCTATCCTTATATGCACATTATCTTTTATGAACTTGAAACTGAAGGGTGGTTTGAGCGGAGCAAAGCTTACGTATCGATTGAAAGGTACCTAAGCAAGAGCTCGAGCACACAAGCTAAGCGTCTCAAAGCCAATTCGGTGAAGGATGGTCAATCGCTTGTCCTAACCATGGATGATCATGAGGAGATAACGGATGAATATAAAGGCGAGAAGGTTTGGTGGATTTCGAGCAAAAAACCAGCGAGCAGGCAGACAATATCTTTG</genome_strand>
        <mrna_strand>CAAGATGATGCAAGATGTTTGGACTCAGTTGGGTCCAACCATTGCAGCAATCATGTTCATCTGGACCATGTACCAGAACTACTTTCCTCACGAACTTCGTGGTCATATTAGGAGGTATACCAATAAACTCGTTAGCTATTTCTATCCTTATATGCACATTATCTTTTATGAACTTGAAACTGAAGGGTGGTTTGAGAGGAGCAAAGCTTATGTAGCAATTGAAAGGTACCTTAGCAAGAACTCGAGCACACAAGCTAAGCGTCTCAAAGCCAACGCGGTGAAGGATGGTCAATCTCTTGTCCTAACCATGGATGATCATGAGGAGATAACCGATGAATATAAAGGCGAGAAGGTTTGGTGGATTTCTAGCCAAAAACCAGCCCGCAGACAGACAATATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414731" ref_strand="+" ref_description="SGN-E414731 [STM-20-E7]">
      <seq>caacctttttaagaattcaaggcacacaatgtatttcagtaatcttttatatctgcctgcagttgaatatacgagatatcagatccgagacaatgtttaaaaaggaaactattattcgaccctattcctttctcaaacctcgaaaccaacaccagttatacaacaatatatgcagaaccctttaactatatattctatacaaactaaatgagtaactaagcatttgaataaggcaaaaattgcagtggtacatactctatgacaaacatgtactaacagtattgtcaatgttccttgcaatctttaacaggcttagcttcaaaacctccttccggtctcctctcaagttcatatggcatgtaagtaccaagtatcctatcccacgtcacaaagaaaggctgtgaatagttatacttggtcccataaagctggtgatggatatcatggtaagcggagttgtttttaaagaagatatggaagagatttccgggcaaccatagtccgcaatgatcatcaactgtcttgatcgtagcaaatgagaaaaagaagatggaggtacgtggtgacatgccagagacaaggaaagctagagccccaccgattgtgtcaagaatcagaccctccnaaagggtggttgtacaaagctccaaatgcatacggaaacaattagccggtgatgttgagcatggatatgtttgtacaagaacttgttttggtgcatgtaccgatgcataaaatattgccaagtatctaacatcaacatggcaacaagtaactgtctgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="132798" stop="134177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133090" g_stop="133877" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="785" r_length="785" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E414731" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133090" e_stop="133877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGAACTAAAGAATTAAAGGCACACAATGTATTTCAGTAATCATTTATCTCTCTGCCTGCAGTTGAATATACCAGATATCAGATCTTGAGACAATGTTTAAAAAGGAAACTATTATTCGACCCTATTCCTTTCTCAAACCTCGAAACCAACATCAGTTATACAACAATATATGCAGAACCCTTTTAACTATATACTCTATACAAATTAAATGAGTAAACTAAGCATTAGAATAATGCAAAAATTGCAGTGGTACATACTCTATGACAAACATGTACTAACAGTATTGTCAATGTTCCTTGCAATCTTTAACAGGCTTAGCTTCAAAACCTCCTTCTGGTCTCCTCTCAAGTTCATATGGCATGTAGGTACCAAGTATCCTATCCCACGTCACAAAGAAAGGCTGTGAATAGTTATACTTGGTCCCGTAAAGCTGGTGATGGATATCATGGTAAGCGGAGTTGTTTTTAAAGAAGATATGGAAGAGATTTCCGGGCAACCATAGCCCGCAGTGATCATCAACCGTCTTGATCGTAGCAAATGAGAAAAAGAAGATGGAGGTACGTGGTGACATCCCGGAGACAAGGAAAGCTAGAGCCCCGCCGATTGTGTCAAGAATCAGACCCTCC-AAAGGGTGGTTGTACAAAGCTCCAAATGCATACGG-AACAATTAGCCGGTGATGTTGAGCATGGATATGTTTGTACAAGAACTTGTTTTGGTGCATGTACCGATGCATAAAATATTGCCAAGTATCTAACATCAACATGCCAACAAATAACTGTCTGCCA</genome_strand>
        <mrna_strand>CAACCTTTTTAAGAATTCAAGGCACACAATGTATTTCAGTAATC-TTT-TATATCTGCCTGCAGTTGAATATACGAGATATCAGATC-CGAGACAATGTTTAAAAAGGAAACTATTATTCGACCCTATTCCTTTCTCAAACCTCGAAACCAACACCAGTTATACAACAATATATGCAGAACCC-TTTAACTATATATTCTATACAAACTAAATGAGT-AACTAAGCATTTGAATAAGGCAAAAATTGCAGTGGTACATACTCTATGACAAACATGTACTAACAGTATTGTCAATGTTCCTTGCAATCTTTAACAGGCTTAGCTTCAAAACCTCCTTCCGGTCTCCTCTCAAGTTCATATGGCATGTAAGTACCAAGTATCCTATCCCACGTCACAAAGAAAGGCTGTGAATAGTTATACTTGGTCCCATAAAGCTGGTGATGGATATCATGGTAAGCGGAGTTGTTTTTAAAGAAGATATGGAAGAGATTTCCGGGCAACCATAGTCCGCAATGATCATCAACTGTCTTGATCGTAGCAAATGAGAAAAAGAAGATGGAGGTACGTGGTGACATGCCAGAGACAAGGAAAGCTAGAGCCCCACCGATTGTGTCAAGAATCAGACCCTCCNAAAGGGTGGTTGTACAAAGCTCCAAATGCATACGGAAACAATTAGCCGGTGATGTTGAGCATGGATATGTTTGTACAAGAACTTGTTTTGGTGCATGTACCGATGCATAAAATATTGCCAAGTATCTAACATCAACATGGCAACAAGTAACTGTCTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209747" ref_strand="-" ref_description="SGN-E209747 [cLEC-52-K2]">
      <seq>ggttgcccggaaatctcttccatatcttctttaaaaacaactccgcttgccatgatatccatcaccagcttttcgggagcaagtataactattcacagcctttctttgtgacgtgggataggatacttggtacctacatgccatatgaacttgagaggagaccagaaggaggttttgaagctaagcctgttaaagattgcaaggaacattgtcaatactgttagcacatgtttgtcatagagtatgtaccgcggcaatttttgcattattataacggttagtttactcatttaatttgtatagagtatatagttaaaagggttctgcatatattgttgaataactgatgttggtttcgaggtttgagaaaggaatagggtcgaataatagtttcccttttaaacattgtctcaagatctgatatctgggatattcaactgcaggcagagagataaatgattggtgaaatgcattgtgtgcctttaattctttgtaacaaaaagaaaaaaaaaataaaaaccgagactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="133890" stop="132786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133590" g_stop="133098" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="519"/>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E209747" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209747" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="133590" e_stop="133098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGCCCGGAAATCTCTTCCATATCTTCTTTAAAAACAACTCCGCTTACCATGATATCCATCACCAGCTTTACGGGACCAAGTATAACTATTCACAGCCTTTCTTTGTGACGTGGGATAGGATACTTGGTACCTACATGCCATATGAACTTGAGAGGAGACCAGAAGGAGGTTTTGAAGCTAAGCCTGTTAAAGATTGCAAGGAACATTGACAATACTGTTAGTACATGTTTGTCATAGAGTATGTACCACTGCAATTTTTGCATTATTCTAATGCTTAGTTTACTCATTTAATTTGTATAGAGTATATAGTTAAAAGGGTTCTGCATATATTGTTGTATAACTGATGTTGGTTTCGAGGTTTGAGAAAGGAATAGGGTCGAATAATAGTTTCCTTTTTAAACATTGTCTCAAGATCTGATATCTGGTATATTCAACTGCAGGCAGAGAGATAAATGATTACTGAAATACATTGTGTGCCTTTAATTCTTTA</genome_strand>
        <mrna_strand>GGTTGCCCGGAAATCTCTTCCATATCTTCTTTAAAAACAACTCCGCTTGCCATGATATCCATCACCAGCTTTTCGGGAGCAAGTATAACTATTCACAGCCTTTCTTTGTGACGTGGGATAGGATACTTGGTACCTACATGCCATATGAACTTGAGAGGAGACCAGAAGGAGGTTTTGAAGCTAAGCCTGTTAAAGATTGCAAGGAACATTGTCAATACTGTTAGCACATGTTTGTCATAGAGTATGTACCGCGGCAATTTTTGCATTATTATAACGGTTAGTTTACTCATTTAATTTGTATAGAGTATATAGTTAAAAGGGTTCTGCATATATTGTTGAATAACTGATGTTGGTTTCGAGGTTTGAGAAAGGAATAGGGTCGAATAATAGTTTCCCTTTTAAACATTGTCTCAAGATCTGATATCTGGGATATTCAACTGCAGGCAGAGAGATAAATGATTGGTGAAATGCATTGTGTGCCTTTAATTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414588" ref_strand="+" ref_description="SGN-E414588 [STM-19-F6]">
      <seq>ccctttttttcagtaatattttatctctgcctgcagttgaatataccagatatcagatctgagacaatgtttaaaaaggaaactattattcgaccctattcctttctcaaacctcgaaaccaacaccagttatacaacaatatatgcagaaccctttaactatatactctatacaaattaaatgagtaactaagcatttgaagaagacaaaaattgcagaggtacatactctatgacaaacatgtactaacagtattgtcaatgttccttgcaatctttaacaggcttagcttcaaaacctccttccggtctcctctcaagttcatgtggcatgtaagtaccaagtatcctatcccatgtcacaaagaaaggctgtgaatagttatacttggtcccataaagctggtgatggatatcatggtaagcggagttgtttttaaagaagatatggaagagatttctgggcaaccatagtccgcaatgatcatcaaccgtcttgatcgtagcaaatgagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="+" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="132819" stop="133938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133116" g_stop="133638" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="+" ref_id="SGN-E414588" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133116" e_stop="133638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGTATTTCAGTAATCATTTATCTCTCTGCCTGCAGTTGAATATACCAGATATCAGATCTTGAGACAATGTTTAAAAAGGAAACTATTATTCGACCCTATTCCTTTCTCAAACCTCGAAACCAACATCAGTTATACAACAATATATGCAGAACCCTTTTAACTATATACTCTATACAAATTAAATGAGTAAACTAAGCATTAGAATAATGCAAAAATTGCAGTGGTACATACTCTATGACAAACATGTACTAACAGTATTGTCAATGTTCCTTGCAATCTTTAACAGGCTTAGCTTCAAAACCTCCTTCTGGTCTCCTCTCAAGTTCATATGGCATGTAGGTACCAAGTATCCTATCCCACGTCACAAAGAAAGGCTGTGAATAGTTATACTTGGTCCCGTAAAGCTGGTGATGGATATCATGGTAAGCGGAGTTGTTTTTAAAGAAGATATGGAAGAGATTTCCGGGCAACCATAGCCCGCAGTGATCATCAACCGTCTTGATCGTAGCAAATGAGAAAA</genome_strand>
        <mrna_strand>CCCTTTTTTTCAGTAAT-ATTT-TATCTCTGCCTGCAGTTGAATATACCAGATATCAGATC-TGAGACAATGTTTAAAAAGGAAACTATTATTCGACCCTATTCCTTTCTCAAACCTCGAAACCAACACCAGTTATACAACAATATATGCAGAACCC-TTTAACTATATACTCTATACAAATTAAATGAGT-AACTAAGCATTTGAAGAAGACAAAAATTGCAGAGGTACATACTCTATGACAAACATGTACTAACAGTATTGTCAATGTTCCTTGCAATCTTTAACAGGCTTAGCTTCAAAACCTCCTTCCGGTCTCCTCTCAAGTTCATGTGGCATGTAAGTACCAAGTATCCTATCCCATGTCACAAAGAAAGGCTGTGAATAGTTATACTTGGTCCCATAAAGCTGGTGATGGATATCATGGTAAGCGGAGTTGTTTTTAAAGAAGATATGGAAGAGATTTCTGGGCAACCATAGTCCGCAATGATCATCAACCGTCTTGATCGTAGCAAATGAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606795" ref_strand="+" ref_description="SGN-E606795 [22746]">
      <seq>gctttctttgtgacgtgggatatgatacttggtacttacatgccgtatgaacttgagaaggagacccggcaaggaggttttgaagctaagcctgttaaagattgcaaggaacattgacaatactgttagtacatgtttgtcatagagtatgtaccactgcaatttttgccttattcaaattcttagttactcatttaatttgtatatagtatatagttaaagggttctgcataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="133791" stop="132959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133492" g_stop="133256" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E606795" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E606795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133492" e_stop="133256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCTTTGTGACGTGGGATAGGATACTTGGTACCTACATGCCATATGAACTTGAG-AGGAGA-CCAG-AAGGAGGTTTTGAAGCTAAGCCTGTTAAAGATTGCAAGGAACATTGACAATACTGTTAGTACATGTTTGTCATAGAGTATGTACCACTGCAATTTTTGCATTATTCTAATGCTTAGTTTACTCATTTAATTTGTATAGAGTATATAGTTAAAAGGGTTCTGCATATATTG</genome_strand>
        <mrna_strand>GCTTTCTTTGTGACGTGGGATATGATACTTGGTACTTACATGCCGTATGAACTTGAGAAGGAGACCCGGCAAGGAGGTTTTGAAGCTAAGCCTGTTAAAGATTGCAAGGAACATTGACAATACTGTTAGTACATGTTTGTCATAGAGTATGTACCACTGCAATTTTTGCCTTATTCAAATTCTTAG-TTACTCATTTAATTTGTATATAGTATATAGTT-AAAGGGTTCTGCATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607240" ref_strand="+" ref_description="SGN-E607240 [23201]">
      <seq>ttgacacaatcggtggggctctagctttccttgtctctggcatgtcaccacgtacctccatcttctttttctcatttgctacgatcaaagacagttgatgatcattgcggactatggttgcccggaaatctcttccatatcttctttaaaaacaactccgcttaccatgatatccatcaccagctttatgggaccaagtataactattcacagcctttctttgtgacgtgggataggatacttggtacttacatgccatatgaacttgagaggagaccgcaaggaggttttgaagctaagcctgttaaagattgcaaggaacattgacaatactgttagtacatgtttgtcatagagtatgtaccactgcaattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="134004" stop="133029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133704" g_stop="133329" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E607240" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E607240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133704" e_stop="133329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACACAATCGGCGGGGCTCTAGCTTTCCTTGTCTCCGGGATGTCACCACGTACCTCCATCTTCTTTTTCTCATTTGCTACGATC-AAGACGGTTGATGATCACTGCGGGCTATGGTTGCCCGGAAATCTCTTCCATATCTTCTTTAAAAACAACTCCGCTTACCATGATATCCATCACCAGCTTTACGGGACCAAGTATAACTATTCACAGCCTTTCTTTGTGACGTGGGATAGGATACTTGGTACCTACATGCCATATGAACTTGAGAGGAGACCAGAAGGAGGTTTTGAAGCTAAGCCTGTTAAAGATTGCAAGGAACATTGACAATACTGTTAGTACATGTTTGTCATAGAGTATGTACCACTGCAATTTTT</genome_strand>
        <mrna_strand>TTGACACAATCGGTGGGGCTCTAGCTTTCCTTGTCTCTGGCATGTCACCACGTACCTCCATCTTCTTTTTCTCATTTGCTACGATCAAAGACAGTTGATGATCATTGCGGACTATGGTTGCCCGGAAATCTCTTCCATATCTTCTTTAAAAACAACTCCGCTTACCATGATATCCATCACCAGCTTTATGGGACCAAGTATAACTATTCACAGCCTTTCTTTGTGACGTGGGATAGGATACTTGGTACTTACATGCCATATGAACTTGAGAGGAGACCGCAAGGAGGTTTTGAAGCTAAGCCTGTTAAAGATTGCAAGGAACATTGACAATACTGTTAGTACATGTTTGTCATAGAGTATGTACCACTGCAATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434238" ref_strand="+" ref_description="SGN-E434238 [STM-59-L11]">
      <seq>gaataatatccactctgaaaaattcattatttttgttaaattttttctgaattttttttgctgtttgaaattccttccaattctatttggaagagaatttcaatcaaaccatatatctcgactcttctctttccctacaaaccctaatttcaattttatacaaagtttgaatcttttacagagtttcaaagaaatctcagtttttcttttattgggtattttatttgttttccttttaaggctactttgaaaaagatagtgattttcttttcctttttaagggtaattttcaaaaaaagatttaaaaaggaacaattttgtttcttttctgggttttttcaattaagggtaatttcaagaaggtataaaggagggatcttggtaatattttggtgaggattttgtatttttgagatggtgggtagtgtgaatattgatcatcaggggaagggaggatatgtgtcagatgaagttttgggaacatttttaccaatagttgtgtattgggtatattcaggattgtatttgatgtttgggaatatggataattataggttgcattctaagaaagatgaggatgaaaagaatttggtgtcaaaaaaagaagttgttaaaggtgttcttctccaacagattgttcaggctgctgttgctaccgttctctttgcggtcacaggagatgatggtgaatctggtggggatcgacacacttcaatctttgttcttggcagacagttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="137372" stop="133564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137073" g_stop="136401" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136400" i_stop="133934" i_length="2467">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133933" g_stop="133864" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="739" r_length="70" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E434238" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137073" e_stop="136401"/>
          <exon e_start="133933" e_stop="133864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAATATCCTCTCTGAAAAATTGATTATTTTTGTTAAATTTTTTCTGAATTTTGTTTTTTTTTTGCTGTTTGAAATTCCTTCCAATTCTATTTGGAAGAGAATTTCAATCAAACCATATATCTCCACTGTTCTCTTTCTCTACAAACCCTAATTTCAATTTTATACAAAGTTTGAATCTTTTACAAAGTTTCAAAGAAATCTCAGTTTTTCTTTTATTGGGTA-TTTGTTTGTTTTCTTTTTAAGGGCAATTTTGAAAAAGATAGTGATTTTCTTTTTCCTTTTAAGGGTAATTTTCAAAAAAAAAAAAAAAGATTTAAAAAGGAACAAATTTTGTTTCTTTATTGGGTTTTTTCAATTAAGGGTGATTTCAAGAAGGTATAAAGGAAGGATCTTGGTAATA----------G--TTTGTATTTTTGAGATGGTGGGTAGTGTGAATATTGATCAACAGGGGAAGGGAGGATATGTGTCAGATGAAGTTTTGGGAACATTTATACCAATAGTTGTGTATTGGGTATATTCAGGATTGTATTTAATGCTTGGGAATATGGATAATTATAGGTTGCATTCTAAGAAAGATGAGGATGAGAAGAATTTGGTGTCAAAAAAAGAGGTTGTTAAAGGTGTTCTTCTCCAACAGATTGTTCAGGCTGCTGTTGCTACGGTTCTTTTCGCGGTTAGTTACTTTGATCATCTCTAGTTGCTGCAATTTGATTTGGAGGTTATTATGCATCATGATGAATTGGATTCATATAGTTTACTATTGAGGTGAAGATTGTATTGATGTATTGTTATGCATATGCTTGTTTGGTCTTCTTTGCTCATAATGATATTTATATGGTTAACTATTGAGGATATGTTGATATGATAACTTGTTATGCATATGTTTGTTTGGTCTAGTTTTAATGAATCATAATGACATAGAGGATTTATATGGTTAACTATTGAGGCCTAGTTGATATTGATAACTTATTATGCATATGCTTGTTTGGTCTTCTTTTTATGCATCATAATGATACAGAGGATTTATATGGTTAGCTATTGAGGCTTAGATAATATTGATAACTTATTATGACATATGCTTGTTTGGTGAACCGTAATGATACATGAGATTAATATGGTTGACTATTGAGGCTTGGTTGATATTGATAACTTATTATGCATATGCTTGTTTGGTTTTGTTTTTATTGGAATGAAATGCTTATATCTGGTGCCGGCTTAAGGTTTAGAAATCATTTGATTTACGAGTGTATGATTTTGTTGACGGTATGTGCAATTTATAAGTGGATGTTGTGTATTACAACACGGGGTGAGTCATATGATTTTGTCAACGGTATATGCAACTCATAATTGGATGTTGTGTATTACCAAAGCGTGGCGAGTCATGGATAGGGGAATATTTATGGATACGATGGCGGTGTAATAATAGTTCTTTTGTCCGAATTGGCACTGCTAGGCAAATGTTGTTGGATCTTAAATTGAATATCATTTTGTTGTTAGGCTGATGAAAAACATTTTGAGTTGTATTCATTGACTTGAGGGAGGAGCTTTTTTATGCTTGTGTGTGAGATCCTAGAATCCATCTGATAGATGGATGGTAAAATTGTTCTACCTTAGTCCTTAACATTTTCTTAATATTTATTTATATACATTTTTGGTTGAGGAGTCATTTGTCAGAGGAACTATGATACAATAGTTTATTTGGATGTTAATTTATAGCTTACTTGTTTTACCTACCATTTAGATAAATCCTTCATGCACAGAATAAACAAATTCAATTGAAGTACAAGAGCAAAAAGTATAACTTCTTTTGTAGGTCAATCACAAAGTTCAAGGTTACTTATGTAGAGTGTTTTATATCTATATAGTATAATTTATGTTGTGAAGTGTCTCAAAATCTCTTGAACCTAAAAAGTGATAGTCGATAGTTATCTGAATAGAAGGTCATCTTTTAACTTTATATGATATATTTTTGATAAGGAAGTTTATATGAAATGCTGAAGCTTGCAGGTTTGATTTCTCTGAGTGGTAGGAAAATAGGAGTTCCGTAAAAGTTAGATGCAGACTGTTGAACCTCAGTTTTGAGTCATTTGATTTTATAAAGAAAGGTTGACTTTGAAGTTCTTCTAGGAAAAATAGGTTGCCAAAGCGGCTCAATACGGCATTGTTTTGATCTTGGCTGTTGATGCTGATGTTGGGGATGAGACTACTGCACGTCTCATATAGAAACTGTCTACAAGGATGTCGAGCCTACCCTAAGAATAAGCTTTTATTGGCTTAATCTGCCTTTACAAAAGAAAATGGGGAATCATTGCTCTTCTTTTGCATTTCGTTGTCTACCTTCTTCTTGGTGTCCATCTGTCCTGCAAAGTTAGTTGACGGAAGCTTAATAGTTGAGAAGAGGAGGCCAAACTGTTGCCTCCCAATAGAGCTTTCTACTGTGCTACTTCACATATGTTTGGAATTATGGAAAGACTAAAGTAAGCTGTGAGATGATCTTTTCAACTGCAATATGTGAGCTTGGATATGTTGAGGGATAGATTCGTTGTTCTAACCTGCAAAGAAGAGATAAAAGAAAACAATGCGGTCTTGTCTTTCCTTTGGCTTGTGTTGATATGTGTAGGCTGTAGCCCAATTTGCAAAGTTTAGCCTAAGTCATATCTATCCCCTTAAAAATTCTACTTCAAACTTATTTTATTTGTTGACACTTCTCTTTATGGGTGGTCATTAGTTGGGTCTCTTGAGTCTTGACTCAACTAATGCACTGGTTTGGTTCCCTTTCACTTTGGTTAGTTGGCTTATGATTCTGGGACCCACAAATTAGCACTTGCCTTATCATTTATGACAGCAGAAATGTAAGCTTTTCTGATCCCAATAGGAAAATAGATAAGTTTAGCTTATACCGAATACAATTTATCTCCGATCAATGAGCTAAAAGTTGTACACCTTTTGTATGTTCTGATAAGTTTAAGTATATATCATGAGTAATTGTACTTTTCATATTTGTTTTATCTACTTTTAGTATCTTGTTTCAATCATGAACGGTGAACCTGATTTTCATATTCTTGTTCCATATCATGTCAATTATTATGTTTGTATTTTGACTAATTCTTGGTGTCTGATTATCTACTAATATGGAGCAGGTCACGGGAGATGATGGTGAATCTGGTGGGGATCAACACGCTTCGATCTTTGTTCTTGGCAGACAGTTAT</genome_strand>
        <mrna_strand>GAATAATATCCACTCTGAAAAATTCATTATTTTTGTTAAATTTTTTCTGAA-------TTTTTTTTGCTGTTTGAAATTCCTTCCAATTCTATTTGGAAGAGAATTTCAATCAAACCATATATCTCGACTCTTCTCTTTCCCTACAAACCCTAATTTCAATTTTATACAAAGTTTGAATCTTTTACAGAGTTTCAAAGAAATCTCAGTTTTTCTTTTATTGGGTATTTTATTTGTTTTCCTTTTAA-GGCTACTTTGAAAAAGATAGTGATTTTCTTTTCCTTTTTAAGGGTAATTTTC--------AAAAAAAGATTTAAAAAGGAAC-AATTTTGTTTCTTTTCTGGGTTTTTTCAATTAAGGGTAATTTCAAGAAGGTATAAAGGAGGGATCTTGGTAATATTTTGGTGAGGATTTTGTATTTTTGAGATGGTGGGTAGTGTGAATATTGATCATCAGGGGAAGGGAGGATATGTGTCAGATGAAGTTTTGGGAACATTTTTACCAATAGTTGTGTATTGGGTATATTCAGGATTGTATTTGATGTTTGGGAATATGGATAATTATAGGTTGCATTCTAAGAAAGATGAGGATGAAAAGAATTTGGTGTCAAAAAAAGAAGTTGTTAAAGGTGTTCTTCTCCAACAGATTGTTCAGGCTGCTGTTGCTACCGTTCTCTTTGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACAGGAGATGATGGTGAATCTGGTGGGGATCGACACACTTCAATCTTTGTTCTTGGCAGACAGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355839" ref_strand="+" ref_description="SGN-E355839 [cLHT-12-A23]">
      <seq>gcaaaacaataatatcctctctgaaaaattgattatttttgttaaattttttctgaattttgtttttttttgctgtttgaaattccttccaattctatttggaagagaatttcaatcaaaaccatatatctccactgttctctttctctacaaaccctaatttcaattttatacaaagtttgaatcttttacagagtttcaaagaaatctcagtttttcttttattgggtatttatttgttttccttttaagattattttgaaaaagatagtgattttctttttccttttaagggtaatttaaaaaaaaaaagatttaaaaaggaacaaattttgtttctttattgggttttttcaattaagggtgatgtcaagaaggtataaaggaaggatcttggtgatattttgtatttttgagatggtgggtagtgtgaatattgatcaacaggggaagggaggatatgtgtcanatgaagttttgggaacatttataccaatagttgtgtattgggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="137379" stop="136260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137079" g_stop="136560" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E355839" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137079" e_stop="136560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAACAATAATATCCTCTCTGAAAAATTGATTATTTTTGTTAAATTTTTTCTGAATTTTGTTTTTTTTTTGCTGTTTGAAATTCCTTCCAATTCTATTTGGAAGAGAATTTCAATC-AAACCATATATCTCCACTGTTCTCTTTCTCTACAAACCCTAATTTCAATTTTATACAAAGTTTGAATCTTTTACAAAGTTTCAAAGAAATCTCAGTTTTTCTTTTATTGGGTATTTGTTTGTTTTCTTTTTAAGGGCAATTTTGAAAAAGATAGTGATTTTCTTTTTCCTTTTAAGGGTAATTTTCAAAAAAAAAAAAAAAGATTTAAAAAGGAACAAATTTTGTTTCTTTATTGGGTTTTTTCAATTAAGGGTGATTTCAAGAAGGTATAAAGGAAGGATCTTGGTAATAGTTTGTATTTTTGAGATGGTGGGTAGTGTGAATATTGATCAACAGGGGAAGGGAGGATATGTGTCAGATGAAGTTTTGGGAACATTTATACCAATAGTTGTGTATTGGGTA</genome_strand>
        <mrna_strand>GCAAAACAATAATATCCTCTCTGAAAAATTGATTATTTTTGTTAAATTTTTTCTGAATTTTGTTTTTTTTT-GCTGTTTGAAATTCCTTCCAATTCTATTTGGAAGAGAATTTCAATCAAAACCATATATCTCCACTGTTCTCTTTCTCTACAAACCCTAATTTCAATTTTATACAAAGTTTGAATCTTTTACAGAGTTTCAAAGAAATCTCAGTTTTTCTTTTATTGGGTATTTATTTGTTTTCCTTTTAA-GATTATTTTGAAAAAGATAGTGATTTTCTTTTTCCTTTTAAGGGTAA-TTT-----AAAAAAAAAAAGATTTAAAAAGGAACAAATTTTGTTTCTTTATTGGGTTTTTTCAATTAAGGGTGATGTCAAGAAGGTATAAAGGAAGGATCTTGGTGATATTTTGTATTTTTGAGATGGTGGGTAGTGTGAATATTGATCAACAGGGGAAGGGAGGATATGTGTCANATGAAGTTTTGGGAACATTTATACCAATAGTTGTGTATTGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379420" ref_strand="+" ref_description="SGN-E379420 [TUS-3-H20](-)">
      <seq>gttttttttttgctgtttgaaattccttccaattctatttggaagagaatttcaatcaaaccatatatctccactgttctctttctctacaaaccctaatttcaattttatacaaagtttgaatcttttacaaagtttcaaagaaatctcagtttttcttttattggatatttgtttgttttcttatctagggcaatatgaaaaagatagtgatttcttttccttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="137318" stop="136491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137018" g_stop="136789" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E379420" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137018" e_stop="136789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTTTTTGCTGTTTGAAATTCCTTCCAATTCTATTTGGAAGAGAATTTCAATCAAACCATATATCTCCACTGTTCTCTTTCTCTACAAACCCTAATTTCAATTTTATACAAAGTTTGAATCTTTTACAAAGTTTCAAAGAAATCTCAGTTTTTCTTTTATTGGGTATTTGTTTGTTTTCTTTTTAAGGGCAATTTTGAAAAAGATAGTGATTTTCTTTTTCCTTTT</genome_strand>
        <mrna_strand>GTTTTTTTTTTGCTGTTTGAAATTCCTTCCAATTCTATTTGGAAGAGAATTTCAATCAAACCATATATCTCCACTGTTCTCTTTCTCTACAAACCCTAATTTCAATTTTATACAAAGTTTGAATCTTTTACAAAGTTTCAAAGAAATCTCAGTTTTTCTTTTATTGGATATTTGTTTGTTTTCTTATCTAGGGCAA-TATGAAAAAGATAGTGA-TTTC-TTTTCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687902" ref_strand="+" ref_description="SGN-E687902 [T3_tus_81_J07]">
      <seq>ctttccgacatcgcccgaaagctcggtctcactgagaccaaacatctggttcgcaaagcggccgagctccgacgactcgccgatgtacagttcgattcctccgccattggcgttggggagatctgcaaggctattatttgcttagagattgctgcttctaggatggatgtggtgtttgatcgtcaggcagcgatnaaattgagtgggatgtcggagaaggcttacaacagatcattcacttcaatgcagaatggaattggagtgaaaaacaagcttgatattagagaattggcaattcagtttgggtgtatcaggctcattccttttgttcaaaaaggtctatcattatacaaagaccggtttcgtacatccttgccaccttctagaagggcaagtgctgatttcagtcgacctgtgttcactgctgctgcgttctatctgtgtgcaaaaaggcacaagctcaaggttgataaaatgaagctaattgaactttgtggaacatcagaacctgaatttgctagtgtttctacctcaatgaatgatctttgttttgatgtttttgggacatcanaggagaaaaaggatcccaagacagtgaaggggaaccgagaactgctcgatgcattacctgaaaaaaggagggttgaagacggtggctattcatccgaggatgatnattcatcagcttacaagaagcgtanacgcatggatgaacatgcttatcaggaatggaaatctactgtcctctcatcaaaaaaccaaagcggccaaaaagctcctaaacaaaccaaacaagccccgcgggacttcatgaagaaagttcctgaaactaaagtccaagcaacataagtctccattgtccttcaattagacaaattttgggtgatttatcaaacagtggacactaaatgattgggcaaaaactcccttttggtttattggtacctaagttacctttttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="142769" stop="139299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142469" g_stop="142356" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142355" i_stop="142263" i_length="93">
            <donor d_prob="0.346" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142262" g_stop="142216" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="161" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142215" i_stop="141632" i_length="584">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141631" g_stop="141527" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="266" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141526" i_stop="141395" i_length="132">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141394" g_stop="141314" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="347" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="141313" i_stop="141036" i_length="278">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="141035" g_stop="140924" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="459" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140923" i_stop="140820" i_length="104">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140819" g_stop="140757" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="522" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140756" i_stop="140621" i_length="136">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="140620" g_stop="140533" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="610" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="140532" i_stop="140419" i_length="114">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="140418" g_stop="140351" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="678" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="140350" i_stop="139995" i_length="356">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="139994" g_stop="139898" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="775" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="139897" i_stop="139796" i_length="102">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="139795" g_stop="139600" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="776" r_stop="969" r_length="194" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E687902" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>971</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142469" e_stop="142356"/>
          <exon e_start="142262" e_stop="142216"/>
          <exon e_start="141631" e_stop="141527"/>
          <exon e_start="141394" e_stop="141314"/>
          <exon e_start="141035" e_stop="140924"/>
          <exon e_start="140819" e_stop="140757"/>
          <exon e_start="140620" e_stop="140533"/>
          <exon e_start="140418" e_stop="140351"/>
          <exon e_start="139994" e_stop="139898"/>
          <exon e_start="139795" e_stop="139600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCCGACATCGCCCGAAAGCTCGGTCTCACTGAGACCAAACATCTGGTTCGCAAAGCGGCCGAGCTCCGACGACTCGCCGATGTACAGTTCGATTCCTCCGCCATTGGCGTTGTAAGTAACGATATGATGGATTGGTTGCTGGGAATTGAGGTTTATTTGATTAGAATTGGATGGGATTGAATTTTGATTGATTTTTCTTTGTAGGGGGAGATCTGCAAGGCTATTATTTGCTTAGAGATTGCTGCTTCTAGGTATAATTTCAGTTTTTTTTCTTCTCTGATTGTTTGGGTGAATTCTGTTCCAAGTTGTATTAGGGTTGAAGTGTAACGATCAGTTAATTATGGGTATGCCAAATTTGTTTGGGTTGGTTATATGAATCTGCTATTTCATTTTTGGATAGATATAAATTGGGCGTATGCAGAGTCGGGTTATTAAATGGGTTGATTTGGATGTCAATTTGTAGTACTGATGAATCAAGTAACTGGGTTATATAGATTTCGTTATATCTGATATCTATTTCATTTATATACTAAATAATTGTGAATGTAGAAATAGCCTCTTGTAGAAATGTAGTGTAAGGCTGCGTGCAGTAGGCAACTGTAAGTTGTGTCCTTCTATGTAGTATAAGGCTGCGTGCAGTAGGCAATTGTAAGTTGTGTCCTTCTATGTAGTGTAAGGCTGCGTGCAGTAGGCAATTGTAAGTTGTGTCCTTCTCCGGACTGCCAAATAGCTGGAGGTCTAGTGCATCTAGACAAAATTACTGATGCCACTGTAAGATGTGGGATATGAGTGACATTTGTCTATGATTTGTAATATGTTCTGGTGATAAATGTAGGATGGATGTGGTGTTTGATCGTCAGGCAGCGATAAAATTGAGTGGGATGTCGGAGAAGGCTTACAACAGATCATTCACTTCAATGCAGAATGGAATTGGAGTGAAGTCAGTTCTTGAGCTTTTGTTTCACTGTACATTTTCCTTTTTGTGAATCTGTACATGCCTTTTGGAGGCAAATCGTGCTTTGTTAGATGTTAGATTCTTGCTGATGTGAAAAGTTTTTTTAAAACTTTGCAGAAACAAGCTTGATATTAGAGAATTGGCAATTCAGTTTGGGTGTATCAGGCTCATTCCTTTTGTTCAAAAAGGTCTATCATTGTAAGTTTGATCATCTACTTTGAACTCATGATCTTACATATTTGTTGTTTTGATTGTCCTGCCTATGATGTTTGTTTGGTCTTGTGTTTGAGAGCCTAATTGGACAAGAATAAGCTGCTTTTGTATTTTTTTTAAGGGATTTGGTTTCGCATGTTTGTGACCTATCTGTGCCTGTTTTTTCTATATTTCAGCATGCTAGAGTTTCTAGTTTTGATGGGGTTATACAAATAGTTAAGAGAGTTCTTAAGTAGGTTCTGATGATTATAATTCCTTTCCAGATACAAAGACCGGTTTCGTACATCCTTGCCACCTTCTAGAAGGGCAAGTGCTGATTTCAGTCGACCTGTGTTCACTGCTGCTGCGTTCTATCTGTGTGCAAAAAGGCACAAGGTTTGTTCAATCTACTCCTCAAGCATTGTTAGTCCTGCTGTGGTTGTAGCAGCATGATAGTTTGGAATGAACTGGCTCACAGTTTTCTTGTTCTGTGTTTGCAGCTCAAGGTTGATAAAATGAAGCTAATTGAACTTTGTGGAACATCAGAACCTGAATTTGCTAGTGTAAGGCCTTTGCTCCTTTAGTTCCTTGTTTCTTTTTCATTGTTATTATCATCAAATTGTTTCTTTACTTCAGCTATCAGTTCCCTGTACTATGGACTATGGTTCTAATATTTTTATGTGGATTGAAATGATGCAGGTTTCTACCTCAATGAATGATCTTTGTTTTGATGTTTTTGGGACATCAAAGGAGAAAAAGGATCCCAAGACAGTGAAGGGGAACCGAGGTAACACATGTTGATTGATCAAGTTCCTCACTTTATTACAAGCAAAATGTGGTTCAGTGTTTTTCAATACACATATGATGATACATACTTTAACATAGTGATTTGCATATGCAGAACTGCTCGATGCATTACCTGAAAAAAGGAGGGTTGAAGACGGTGGCTATTCATCCGAGGATGATAATGTAAATGAGAAGCTCTCTCTCTTGAATTTTGCTACTATTTAATGATGCCATAACACTAATTAACATAAGTAAGGAACACAGAAACACTCAACTCAGATATAAACACCTGTTTATGTATATGTTAACCATAGAAGATATGGCAAGCCACATTGATGCTTATTTGAACCCCTAGATTAGAAAAAAAATTATGATGAATTTGACTGGTTACTGGCTCATCTTGAAGTAAATTATCATTGAATGGAAGTTATAATCTCTGCAAATCTTTGTGCTCGAGTTATATAGTCAATTAAAGTTCTTACAAGTTACATCTCAGTTTGTGTTGTTTCTTGCTGATTTTGAAACCTTCCATTTTGCAGTCATCAGCTTACAAGAAGCGTAAACGCATGGATGAACATGCTTATCAGGAATGGAAATCTACTGTCCTCTCATCAAAAAACCAAAGCGGCCAAAAAGGTAACATAAATGAATACTTGATCCATAACTAAGAGTTCCATGAACATTTAGTAGTTACATTAGCTTATGTGCTGATGCAAAATTGTCTGTTTATTCTTGTAGCTCCTAAACAAACCAAACAAGCCCGGCTGGACTTCATGAAGAAAGTTCCTGAAACTAAAGTCCAAGCAACATAAGTCTCCATTGTCCTTCAATTAGACAAATTTTGGTTGATTTTATCAAACAGTGGACACTAAATGATTGGGCAGAAACTTCCTTTTGGTTTATTGGTACCATAGTTTACCTTTTTTAAAAAAAA</genome_strand>
        <mrna_strand>CTTTCCGACATCGCCCGAAAGCTCGGTCTCACTGAGACCAAACATCTGGTTCGCAAAGCGGCCGAGCTCCGACGACTCGCCGATGTACAGTTCGATTCCTCCGCCATTGGCGTT.............................................................................................GGGGAGATCTGCAAGGCTATTATTTGCTTAGAGATTGCTGCTTCTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGATGTGGTGTTTGATCGTCAGGCAGCGATNAAATTGAGTGGGATGTCGGAGAAGGCTTACAACAGATCATTCACTTCAATGCAGAATGGAATTGGAGTGAA....................................................................................................................................AAACAAGCTTGATATTAGAGAATTGGCAATTCAGTTTGGGTGTATCAGGCTCATTCCTTTTGTTCAAAAAGGTCTATCATT......................................................................................................................................................................................................................................................................................ATACAAAGACCGGTTTCGTACATCCTTGCCACCTTCTAGAAGGGCAAGTGCTGATTTCAGTCGACCTGTGTTCACTGCTGCTGCGTTCTATCTGTGTGCAAAAAGGCACAAG........................................................................................................CTCAAGGTTGATAAAATGAAGCTAATTGAACTTTGTGGAACATCAGAACCTGAATTTGCTAGT........................................................................................................................................GTTTCTACCTCAATGAATGATCTTTGTTTTGATGTTTTTGGGACATCANAGGAGAAAAAGGATCCCAAGACAGTGAAGGGGAACCGAG..................................................................................................................AACTGCTCGATGCATTACCTGAAAAAAGGAGGGTTGAAGACGGTGGCTATTCATCCGAGGATGATNAT....................................................................................................................................................................................................................................................................................................................................................................TCATCAGCTTACAAGAAGCGTANACGCATGGATGAACATGCTTATCAGGAATGGAAATCTACTGTCCTCTCATCAAAAAACCAAAGCGGCCAAAAAG......................................................................................................CTCCTAAACAAACCAAACAAGCCCCGCGGGACTTCATGAAGAAAGTTCCTGAAACTAAAGTCCAAGCAACATAAGTCTCCATTGTCCTTCAATTAGACAAATTTTGGGTGA-TTTATCAAACAGTGGACACTAAATGATTGGGCAAAAACTCCCTTTTGGTTTATTGGTACC-TAAGTTACCTTTTTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705222" ref_strand="+" ref_description="SGN-E705222 [FA26CA09]">
      <seq>aacaaatggatctttccgacatcgcccgaaagctcggtctcactgagaccaaacatctggttcgcaaagcggccgagctccgacgactcgccgatgtacagttcgattcctccgccattggcgttggggagatctgcaaggctattatttgcttagagattgctgcttctaggatggatgtggtgtttgatcgtcaggcagcgataaaattgagtgggatgtcggagaaggcttacaacagatcattcacttcaatgcagaatggaattggagtgaaaaacaagcttgatattagagaattggcaattcagtttgggtgtatcaggctcattccttttgttcaaaaaggtctatcattatacaaagaccggtttcgtacatccttgccaccttctagaagggcaagtgctgatttcagtcgacctgtgttcactgctgctgcgttctatctgtgtgcaaaaaggcacaagctcaaggttgataaaatgaagctaattgaactttgtggaacatcagaacctgaatttgctagtgtttctacctcaatgaatgatctttgttttgatgtttttgggacatcaaaggagaaaaaggatcccaagacagtgaaggggaaccgagaactgctcgatgcattacctgaaaaaaggagggttgaagacggtggctattcatccgaggatgataattcatcagcttacaagaagcgtaaacgcatggatgaacatgcttatcaggaatggaaatctactgtcctctcatcaaaaaaccaaagcggccaaaaagctcctaaacaaaccaaacaagcccggctggacttcatgaagaaagttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="142780" stop="139447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142480" g_stop="142356" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142355" i_stop="142263" i_length="93">
            <donor d_prob="0.346" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142262" g_stop="142216" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="172" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142215" i_stop="141632" i_length="584">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141631" g_stop="141527" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="277" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141526" i_stop="141395" i_length="132">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141394" g_stop="141314" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="358" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="141313" i_stop="141036" i_length="278">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="141035" g_stop="140924" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="470" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140923" i_stop="140820" i_length="104">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140819" g_stop="140757" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="533" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140756" i_stop="140621" i_length="136">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="140620" g_stop="140533" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="621" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="140532" i_stop="140419" i_length="114">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="140418" g_stop="140351" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="689" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="140350" i_stop="139995" i_length="356">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="139994" g_stop="139898" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="786" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="139897" i_stop="139796" i_length="102">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="139795" g_stop="139747" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="787" r_stop="835" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E705222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142480" e_stop="142356"/>
          <exon e_start="142262" e_stop="142216"/>
          <exon e_start="141631" e_stop="141527"/>
          <exon e_start="141394" e_stop="141314"/>
          <exon e_start="141035" e_stop="140924"/>
          <exon e_start="140819" e_stop="140757"/>
          <exon e_start="140620" e_stop="140533"/>
          <exon e_start="140418" e_stop="140351"/>
          <exon e_start="139994" e_stop="139898"/>
          <exon e_start="139795" e_stop="139747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAATGGATCTTTCCGACATCGCCCGAAAGCTCGGTCTCACTGAGACCAAACATCTGGTTCGCAAAGCGGCCGAGCTCCGACGACTCGCCGATGTACAGTTCGATTCCTCCGCCATTGGCGTTGTAAGTAACGATATGATGGATTGGTTGCTGGGAATTGAGGTTTATTTGATTAGAATTGGATGGGATTGAATTTTGATTGATTTTTCTTTGTAGGGGGAGATCTGCAAGGCTATTATTTGCTTAGAGATTGCTGCTTCTAGGTATAATTTCAGTTTTTTTTCTTCTCTGATTGTTTGGGTGAATTCTGTTCCAAGTTGTATTAGGGTTGAAGTGTAACGATCAGTTAATTATGGGTATGCCAAATTTGTTTGGGTTGGTTATATGAATCTGCTATTTCATTTTTGGATAGATATAAATTGGGCGTATGCAGAGTCGGGTTATTAAATGGGTTGATTTGGATGTCAATTTGTAGTACTGATGAATCAAGTAACTGGGTTATATAGATTTCGTTATATCTGATATCTATTTCATTTATATACTAAATAATTGTGAATGTAGAAATAGCCTCTTGTAGAAATGTAGTGTAAGGCTGCGTGCAGTAGGCAACTGTAAGTTGTGTCCTTCTATGTAGTATAAGGCTGCGTGCAGTAGGCAATTGTAAGTTGTGTCCTTCTATGTAGTGTAAGGCTGCGTGCAGTAGGCAATTGTAAGTTGTGTCCTTCTCCGGACTGCCAAATAGCTGGAGGTCTAGTGCATCTAGACAAAATTACTGATGCCACTGTAAGATGTGGGATATGAGTGACATTTGTCTATGATTTGTAATATGTTCTGGTGATAAATGTAGGATGGATGTGGTGTTTGATCGTCAGGCAGCGATAAAATTGAGTGGGATGTCGGAGAAGGCTTACAACAGATCATTCACTTCAATGCAGAATGGAATTGGAGTGAAGTCAGTTCTTGAGCTTTTGTTTCACTGTACATTTTCCTTTTTGTGAATCTGTACATGCCTTTTGGAGGCAAATCGTGCTTTGTTAGATGTTAGATTCTTGCTGATGTGAAAAGTTTTTTTAAAACTTTGCAGAAACAAGCTTGATATTAGAGAATTGGCAATTCAGTTTGGGTGTATCAGGCTCATTCCTTTTGTTCAAAAAGGTCTATCATTGTAAGTTTGATCATCTACTTTGAACTCATGATCTTACATATTTGTTGTTTTGATTGTCCTGCCTATGATGTTTGTTTGGTCTTGTGTTTGAGAGCCTAATTGGACAAGAATAAGCTGCTTTTGTATTTTTTTTAAGGGATTTGGTTTCGCATGTTTGTGACCTATCTGTGCCTGTTTTTTCTATATTTCAGCATGCTAGAGTTTCTAGTTTTGATGGGGTTATACAAATAGTTAAGAGAGTTCTTAAGTAGGTTCTGATGATTATAATTCCTTTCCAGATACAAAGACCGGTTTCGTACATCCTTGCCACCTTCTAGAAGGGCAAGTGCTGATTTCAGTCGACCTGTGTTCACTGCTGCTGCGTTCTATCTGTGTGCAAAAAGGCACAAGGTTTGTTCAATCTACTCCTCAAGCATTGTTAGTCCTGCTGTGGTTGTAGCAGCATGATAGTTTGGAATGAACTGGCTCACAGTTTTCTTGTTCTGTGTTTGCAGCTCAAGGTTGATAAAATGAAGCTAATTGAACTTTGTGGAACATCAGAACCTGAATTTGCTAGTGTAAGGCCTTTGCTCCTTTAGTTCCTTGTTTCTTTTTCATTGTTATTATCATCAAATTGTTTCTTTACTTCAGCTATCAGTTCCCTGTACTATGGACTATGGTTCTAATATTTTTATGTGGATTGAAATGATGCAGGTTTCTACCTCAATGAATGATCTTTGTTTTGATGTTTTTGGGACATCAAAGGAGAAAAAGGATCCCAAGACAGTGAAGGGGAACCGAGGTAACACATGTTGATTGATCAAGTTCCTCACTTTATTACAAGCAAAATGTGGTTCAGTGTTTTTCAATACACATATGATGATACATACTTTAACATAGTGATTTGCATATGCAGAACTGCTCGATGCATTACCTGAAAAAAGGAGGGTTGAAGACGGTGGCTATTCATCCGAGGATGATAATGTAAATGAGAAGCTCTCTCTCTTGAATTTTGCTACTATTTAATGATGCCATAACACTAATTAACATAAGTAAGGAACACAGAAACACTCAACTCAGATATAAACACCTGTTTATGTATATGTTAACCATAGAAGATATGGCAAGCCACATTGATGCTTATTTGAACCCCTAGATTAGAAAAAAAATTATGATGAATTTGACTGGTTACTGGCTCATCTTGAAGTAAATTATCATTGAATGGAAGTTATAATCTCTGCAAATCTTTGTGCTCGAGTTATATAGTCAATTAAAGTTCTTACAAGTTACATCTCAGTTTGTGTTGTTTCTTGCTGATTTTGAAACCTTCCATTTTGCAGTCATCAGCTTACAAGAAGCGTAAACGCATGGATGAACATGCTTATCAGGAATGGAAATCTACTGTCCTCTCATCAAAAAACCAAAGCGGCCAAAAAGGTAACATAAATGAATACTTGATCCATAACTAAGAGTTCCATGAACATTTAGTAGTTACATTAGCTTATGTGCTGATGCAAAATTGTCTGTTTATTCTTGTAGCTCCTAAACAAACCAAACAAGCCCGGCTGGACTTCATGAAGAAAGTTCC</genome_strand>
        <mrna_strand>AACAAATGGATCTTTCCGACATCGCCCGAAAGCTCGGTCTCACTGAGACCAAACATCTGGTTCGCAAAGCGGCCGAGCTCCGACGACTCGCCGATGTACAGTTCGATTCCTCCGCCATTGGCGTT.............................................................................................GGGGAGATCTGCAAGGCTATTATTTGCTTAGAGATTGCTGCTTCTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGATGTGGTGTTTGATCGTCAGGCAGCGATAAAATTGAGTGGGATGTCGGAGAAGGCTTACAACAGATCATTCACTTCAATGCAGAATGGAATTGGAGTGAA....................................................................................................................................AAACAAGCTTGATATTAGAGAATTGGCAATTCAGTTTGGGTGTATCAGGCTCATTCCTTTTGTTCAAAAAGGTCTATCATT......................................................................................................................................................................................................................................................................................ATACAAAGACCGGTTTCGTACATCCTTGCCACCTTCTAGAAGGGCAAGTGCTGATTTCAGTCGACCTGTGTTCACTGCTGCTGCGTTCTATCTGTGTGCAAAAAGGCACAAG........................................................................................................CTCAAGGTTGATAAAATGAAGCTAATTGAACTTTGTGGAACATCAGAACCTGAATTTGCTAGT........................................................................................................................................GTTTCTACCTCAATGAATGATCTTTGTTTTGATGTTTTTGGGACATCAAAGGAGAAAAAGGATCCCAAGACAGTGAAGGGGAACCGAG..................................................................................................................AACTGCTCGATGCATTACCTGAAAAAAGGAGGGTTGAAGACGGTGGCTATTCATCCGAGGATGATAAT....................................................................................................................................................................................................................................................................................................................................................................TCATCAGCTTACAAGAAGCGTAAACGCATGGATGAACATGCTTATCAGGAATGGAAATCTACTGTCCTCTCATCAAAAAACCAAAGCGGCCAAAAAG......................................................................................................CTCCTAAACAAACCAAACAAGCCCGGCTGGACTTCATGAAGAAAGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327633" ref_strand="+" ref_description="SGN-E327633 [cTOC-20-P15]">
      <seq>tttccgacatcgcccgaaagctcggtctcactgagaccaaacatctggttcgcaaagcggccgagctccgacgactcgccgatgtacagttcgattcctccgccattggcgttggggagatctgcaaggctattatttgcttagagattgctgcttctaggatggatgtggtgtttgatcgtcaggcagcgataaaattgagtgggatgtcggagaaggcttacaacagatcattcacttcaatgcagaatggaattggagtgaaaaacaagcttgatattagagaattggcaattcagtttgggtgtatcaggctcattccttttgttcaaaaaggtctatcattatacaaagaccggtttcgtacatccttgccaccttctagaagggcaagtgctgatttcagtcgacctgtgttcactgctgctgcgttctatctgtgtgcaaaaaggcacaagctcaaggttgataaaatgaagctaattgaactttgtggaacatcagaacctgaatttgctagtgtttctacctcaatgaatgatctttgttttgatgtttttgggacatcaaaggagaaaaaggatcccaagacagtgaaggggaaccgagaactgctcgatgcattacctgaaaaaaggagggttgaagacggtggctattcatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="142768" stop="140063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142468" g_stop="142356" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142355" i_stop="142263" i_length="93">
            <donor d_prob="0.346" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142262" g_stop="142216" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="160" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142215" i_stop="141632" i_length="584">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141631" g_stop="141527" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="265" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141526" i_stop="141395" i_length="132">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141394" g_stop="141314" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="346" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="141313" i_stop="141036" i_length="278">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="141035" g_stop="140924" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="458" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140923" i_stop="140820" i_length="104">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140819" g_stop="140757" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="521" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140756" i_stop="140621" i_length="136">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="140620" g_stop="140533" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="609" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="140532" i_stop="140419" i_length="114">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="140418" g_stop="140363" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="665" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E327633" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142468" e_stop="142356"/>
          <exon e_start="142262" e_stop="142216"/>
          <exon e_start="141631" e_stop="141527"/>
          <exon e_start="141394" e_stop="141314"/>
          <exon e_start="141035" e_stop="140924"/>
          <exon e_start="140819" e_stop="140757"/>
          <exon e_start="140620" e_stop="140533"/>
          <exon e_start="140418" e_stop="140363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCGACATCGCCCGAAAGCTCGGTCTCACTGAGACCAAACATCTGGTTCGCAAAGCGGCCGAGCTCCGACGACTCGCCGATGTACAGTTCGATTCCTCCGCCATTGGCGTTGTAAGTAACGATATGATGGATTGGTTGCTGGGAATTGAGGTTTATTTGATTAGAATTGGATGGGATTGAATTTTGATTGATTTTTCTTTGTAGGGGGAGATCTGCAAGGCTATTATTTGCTTAGAGATTGCTGCTTCTAGGTATAATTTCAGTTTTTTTTCTTCTCTGATTGTTTGGGTGAATTCTGTTCCAAGTTGTATTAGGGTTGAAGTGTAACGATCAGTTAATTATGGGTATGCCAAATTTGTTTGGGTTGGTTATATGAATCTGCTATTTCATTTTTGGATAGATATAAATTGGGCGTATGCAGAGTCGGGTTATTAAATGGGTTGATTTGGATGTCAATTTGTAGTACTGATGAATCAAGTAACTGGGTTATATAGATTTCGTTATATCTGATATCTATTTCATTTATATACTAAATAATTGTGAATGTAGAAATAGCCTCTTGTAGAAATGTAGTGTAAGGCTGCGTGCAGTAGGCAACTGTAAGTTGTGTCCTTCTATGTAGTATAAGGCTGCGTGCAGTAGGCAATTGTAAGTTGTGTCCTTCTATGTAGTGTAAGGCTGCGTGCAGTAGGCAATTGTAAGTTGTGTCCTTCTCCGGACTGCCAAATAGCTGGAGGTCTAGTGCATCTAGACAAAATTACTGATGCCACTGTAAGATGTGGGATATGAGTGACATTTGTCTATGATTTGTAATATGTTCTGGTGATAAATGTAGGATGGATGTGGTGTTTGATCGTCAGGCAGCGATAAAATTGAGTGGGATGTCGGAGAAGGCTTACAACAGATCATTCACTTCAATGCAGAATGGAATTGGAGTGAAGTCAGTTCTTGAGCTTTTGTTTCACTGTACATTTTCCTTTTTGTGAATCTGTACATGCCTTTTGGAGGCAAATCGTGCTTTGTTAGATGTTAGATTCTTGCTGATGTGAAAAGTTTTTTTAAAACTTTGCAGAAACAAGCTTGATATTAGAGAATTGGCAATTCAGTTTGGGTGTATCAGGCTCATTCCTTTTGTTCAAAAAGGTCTATCATTGTAAGTTTGATCATCTACTTTGAACTCATGATCTTACATATTTGTTGTTTTGATTGTCCTGCCTATGATGTTTGTTTGGTCTTGTGTTTGAGAGCCTAATTGGACAAGAATAAGCTGCTTTTGTATTTTTTTTAAGGGATTTGGTTTCGCATGTTTGTGACCTATCTGTGCCTGTTTTTTCTATATTTCAGCATGCTAGAGTTTCTAGTTTTGATGGGGTTATACAAATAGTTAAGAGAGTTCTTAAGTAGGTTCTGATGATTATAATTCCTTTCCAGATACAAAGACCGGTTTCGTACATCCTTGCCACCTTCTAGAAGGGCAAGTGCTGATTTCAGTCGACCTGTGTTCACTGCTGCTGCGTTCTATCTGTGTGCAAAAAGGCACAAGGTTTGTTCAATCTACTCCTCAAGCATTGTTAGTCCTGCTGTGGTTGTAGCAGCATGATAGTTTGGAATGAACTGGCTCACAGTTTTCTTGTTCTGTGTTTGCAGCTCAAGGTTGATAAAATGAAGCTAATTGAACTTTGTGGAACATCAGAACCTGAATTTGCTAGTGTAAGGCCTTTGCTCCTTTAGTTCCTTGTTTCTTTTTCATTGTTATTATCATCAAATTGTTTCTTTACTTCAGCTATCAGTTCCCTGTACTATGGACTATGGTTCTAATATTTTTATGTGGATTGAAATGATGCAGGTTTCTACCTCAATGAATGATCTTTGTTTTGATGTTTTTGGGACATCAAAGGAGAAAAAGGATCCCAAGACAGTGAAGGGGAACCGAGGTAACACATGTTGATTGATCAAGTTCCTCACTTTATTACAAGCAAAATGTGGTTCAGTGTTTTTCAATACACATATGATGATACATACTTTAACATAGTGATTTGCATATGCAGAACTGCTCGATGCATTACCTGAAAAAAGGAGGGTTGAAGACGGTGGCTATTCATCC</genome_strand>
        <mrna_strand>TTTCCGACATCGCCCGAAAGCTCGGTCTCACTGAGACCAAACATCTGGTTCGCAAAGCGGCCGAGCTCCGACGACTCGCCGATGTACAGTTCGATTCCTCCGCCATTGGCGTT.............................................................................................GGGGAGATCTGCAAGGCTATTATTTGCTTAGAGATTGCTGCTTCTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGATGTGGTGTTTGATCGTCAGGCAGCGATAAAATTGAGTGGGATGTCGGAGAAGGCTTACAACAGATCATTCACTTCAATGCAGAATGGAATTGGAGTGAA....................................................................................................................................AAACAAGCTTGATATTAGAGAATTGGCAATTCAGTTTGGGTGTATCAGGCTCATTCCTTTTGTTCAAAAAGGTCTATCATT......................................................................................................................................................................................................................................................................................ATACAAAGACCGGTTTCGTACATCCTTGCCACCTTCTAGAAGGGCAAGTGCTGATTTCAGTCGACCTGTGTTCACTGCTGCTGCGTTCTATCTGTGTGCAAAAAGGCACAAG........................................................................................................CTCAAGGTTGATAAAATGAAGCTAATTGAACTTTGTGGAACATCAGAACCTGAATTTGCTAGT........................................................................................................................................GTTTCTACCTCAATGAATGATCTTTGTTTTGATGTTTTTGGGACATCAAAGGAGAAAAAGGATCCCAAGACAGTGAAGGGGAACCGAG..................................................................................................................AACTGCTCGATGCATTACCTGAAAAAAGGAGGGTTGAAGACGGTGGCTATTCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309647" ref_strand="+" ref_description="SGN-E309647 [cLEY-26-F22]">
      <seq>gccactagagcttgcaagtgcactctcaatcgaacgagaacccgttactgatcctgaaattcgtgtacaggcgctagaggctatttatttgctcatattacaggaagctggcagaagagcattttggtcagtgaatggtccccggatattgcaagtgggctatgcagacgaggatgatcctaaagcaatggaagcatatgagcgagctggctccttgctgattcaagagagcggcctcgatgaagaattaacagatacgtcttcgttagcagagacatcttcgtagacatcctactttcttgctggttttgattctacaatagcaacgagttccaacaatcaattagacaatctgcaggttgcttaagagtagtcaagctctatagaagtggaaggtccaaagtgtactttgaattattatattttttgggtttcttgtcgccgggttagttatgatcctcttaaaggttgttatatcaaggactcgggtgatgtattcccagaggttattgttattactggataatttaaggcccgcgatacgggtccaatataattttacattttacataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="144613" stop="46860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144313" g_stop="144211" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144210" i_stop="143673" i_length="538">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143672" g_stop="143559" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="217" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="143558" i_stop="143461" i_length="98">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143460" g_stop="143097" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="581" r_length="364" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E309647" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144313" e_stop="144211"/>
          <exon e_start="143672" e_stop="143559"/>
          <exon e_start="143460" e_stop="143097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACTAGAGCTTGCAAGTGCACTCTCAATCGAACGAGAACCCGTTACTGATCCTGAAATTCGTGTACAGGCGCTAGAGGCTATTTATTTGCTCATATTACAGGTATAGTCTGAACTTATTCTCTGTATGTGCTTCATTTGCTTATCTTAATCCTTACAGCTGTGATAATAAGCAGCACATCTTATAGCTTTTCAAGATCGGAGTCTATATCCAGCCACCTGAAATAGTAGCTCCTCTTCTTCTACATAGTTGATTATCTCAAAAGTGTTTTACTTTTAGATGTGTGGATAGAAGGAACTAGGCAGCTATCGTTCTGTGTAATGGAACCATTTAATCAAGCCATTCATCACTTTTTGGAACTTAAACTATAACCACACGCACAAAAAAAGTTTTTGACCAATTGTAGAGGATGGTTGTCCAAGAACAGCACTCTTTGTTTTTGGTCCATACAAGTTTATAAAGGAAATCTTGTGTGTATGAATTGATCATTTCTTCTACTCTGTCAGATCGCCAAATCATTGTACCATTAGTAGTTCACGAATCCCTTCTACTTGCTAGTTGCTGCGTTTGTCCTATCAAACAACAGATTTTATTGTCCGGGGAAGCTTTCCTCTGTATGATATGCTCGAATTGATTGTAGGAAGCTGGCAGAAGAGCATTTTGGTCAGTGAATGGTCCCCGGATATTGCAAGTGGGCTATGCAGACGAGGATGATCCTAAAGCAATGGAAGCATATGAGCGAGCTGGCTCCTTGGTATTTCCAAACTGCAGCCTATCATCCGTCAAGTCTCTTCTGTCATATGAAATATATCTTTTCACTGTCCTAACCTGAATTCTTCTGAATGTTAACAGCTGATTCAAGAGAGCGGCCTCGATGAAGAATTAACAGATACGTCTTCGTTAGCAGAGACATCTTCGTAGACATCCTACTTTCTTGCTGGTTTTGATTCTACAATAGCAACGAGTTCCAACAATCAATTAGACAATCTGCAGGTTGCTTAAGAGTAGTCAAGCTCTATAGAAGTGGAAGGTCCAAAGTGTACTTTGAATTATTATATTTTTTGGGTTTCTTGTCGCCGGGTTAGTTATGATCCTCTTAAAGGTTGTTATATCAAGGACTCGGGTGATGTATTCCCAGAGGTTATTGTTATTACTGGATAATTTAAGGCCCGCGATACGGGTCCAATATAATTTTACATTTTACATAAATTCACAA</genome_strand>
        <mrna_strand>GCCACTAGAGCTTGCAAGTGCACTCTCAATCGAACGAGAACCCGTTACTGATCCTGAAATTCGTGTACAGGCGCTAGAGGCTATTTATTTGCTCATATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGGCAGAAGAGCATTTTGGTCAGTGAATGGTCCCCGGATATTGCAAGTGGGCTATGCAGACGAGGATGATCCTAAAGCAATGGAAGCATATGAGCGAGCTGGCTCCTTG..................................................................................................CTGATTCAAGAGAGCGGCCTCGATGAAGAATTAACAGATACGTCTTCGTTAGCAGAGACATCTTCGTAGACATCCTACTTTCTTGCTGGTTTTGATTCTACAATAGCAACGAGTTCCAACAATCAATTAGACAATCTGCAGGTTGCTTAAGAGTAGTCAAGCTCTATAGAAGTGGAAGGTCCAAAGTGTACTTTGAATTATTATATTTTTTGGGTTTCTTGTCGCCGGGTTAGTTATGATCCTCTTAAAGGTTGTTATATCAAGGACTCGGGTGATGTATTCCCAGAGGTTATTGTTATTACTGGATAATTTAAGGCCCGCGATACGGGTCCAATATAATTTTACATTTTACATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247639" ref_strand="-" ref_description="SGN-E247639 [cLEF-42-N14]">
      <seq>ataaggtctatagtgaggaagacactcggaaaatgccactagagcttgcaagtgcactctcaatcgaacgagaacccgttactgatcctgaaattcgtgtacaggcgctagaggctatttatttgctcatattacaggaagctggcagaagagcattttggtcagtgaatggtccccggatattgcaagtgggctatgcagacgaggatgatcctaaagcaatggaagcatatgagcgagctggctccttgctgattcaagagagcggcctcgatgaagaattaacagatacgtcttcgttagcagagacatcttcgtagacatcctactttcttgctggttttgattctacaatagcaacgagttccaacaatcaattagacaatctgcaggttgcttaagagtagtcaagctctatagaagtggaaggtccaaagtgtactttgaattattatattttttgggtttcttgtcgccgggttagttatgatcctcttaaaggttgttatatcaaggactcgggtgatgtattcccagaggttattgttattactggataatttaaggcccgcgatacgggtccaatataattttacattttacataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="144644" stop="142804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144342" g_stop="144211" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="137" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144210" i_stop="143673" i_length="538">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143672" g_stop="143559" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="251" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="143558" i_stop="143461" i_length="98">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143460" g_stop="143099" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="613" r_length="362" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E247639" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247639" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="144342" e_stop="144211"/>
          <exon e_start="143672" e_stop="143559"/>
          <exon e_start="143460" e_stop="143099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTATAGTGAGGAAGACACTCGGAAAATGCCACTAGAGCTTGCAAGTGCACTCTCAATCGAACGAGAACCCGTTACTGATCCTGAAATTCGTGTACAGGCGCTAGAGGCTATTTATTTGCTCATATTACAGGTATAGTCTGAACTTATTCTCTGTATGTGCTTCATTTGCTTATCTTAATCCTTACAGCTGTGATAATAAGCAGCACATCTTATAGCTTTTCAAGATCGGAGTCTATATCCAGCCACCTGAAATAGTAGCTCCTCTTCTTCTACATAGTTGATTATCTCAAAAGTGTTTTACTTTTAGATGTGTGGATAGAAGGAACTAGGCAGCTATCGTTCTGTGTAATGGAACCATTTAATCAAGCCATTCATCACTTTTTGGAACTTAAACTATAACCACACGCACAAAAAAAGTTTTTGACCAATTGTAGAGGATGGTTGTCCAAGAACAGCACTCTTTGTTTTTGGTCCATACAAGTTTATAAAGGAAATCTTGTGTGTATGAATTGATCATTTCTTCTACTCTGTCAGATCGCCAAATCATTGTACCATTAGTAGTTCACGAATCCCTTCTACTTGCTAGTTGCTGCGTTTGTCCTATCAAACAACAGATTTTATTGTCCGGGGAAGCTTTCCTCTGTATGATATGCTCGAATTGATTGTAGGAAGCTGGCAGAAGAGCATTTTGGTCAGTGAATGGTCCCCGGATATTGCAAGTGGGCTATGCAGACGAGGATGATCCTAAAGCAATGGAAGCATATGAGCGAGCTGGCTCCTTGGTATTTCCAAACTGCAGCCTATCATCCGTCAAGTCTCTTCTGTCATATGAAATATATCTTTTCACTGTCCTAACCTGAATTCTTCTGAATGTTAACAGCTGATTCAAGAGAGCGGCCTCGATGAAGAATTAACAGATACGTCTTCGTTAGCAGAGACATCTTCGTAGACATCCTACTTTCTTGCTGGTTTTGATTCTACAATAGCAACGAGTTCCAACAATCAATTAGACAATCTGCAGGTTGCTTAAGAGTAGTCAAGCTCTATAGAAGTGGAAGGTCCAAAGTGTACTTTGAATTATTATATTTTTTGGGTTTCTTGTCGCCGGGTTAGTTATGATCCTCTTAAAGGTTGTTATATCAAGGACTCGGGTGATGTATTCCCAGAGGTTATTGTTATTACTGGATAATTTAAGGCCCGCGATACGGGTCCAATATAATTTTACATTTTACATAAATTCAC</genome_strand>
        <mrna_strand>GTCTATAGTGAGGAAGACACTCGGAAAATGCCACTAGAGCTTGCAAGTGCACTCTCAATCGAACGAGAACCCGTTACTGATCCTGAAATTCGTGTACAGGCGCTAGAGGCTATTTATTTGCTCATATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGGCAGAAGAGCATTTTGGTCAGTGAATGGTCCCCGGATATTGCAAGTGGGCTATGCAGACGAGGATGATCCTAAAGCAATGGAAGCATATGAGCGAGCTGGCTCCTTG..................................................................................................CTGATTCAAGAGAGCGGCCTCGATGAAGAATTAACAGATACGTCTTCGTTAGCAGAGACATCTTCGTAGACATCCTACTTTCTTGCTGGTTTTGATTCTACAATAGCAACGAGTTCCAACAATCAATTAGACAATCTGCAGGTTGCTTAAGAGTAGTCAAGCTCTATAGAAGTGGAAGGTCCAAAGTGTACTTTGAATTATTATATTTTTTGGGTTTCTTGTCGCCGGGTTAGTTATGATCCTCTTAAAGGTTGTTATATCAAGGACTCGGGTGATGTATTCCCAGAGGTTATTGTTATTACTGGATAATTTAAGGCCCGCGATACGGGTCCAATATAATTTTACATTTTACATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309760" ref_strand="+" ref_description="SGN-E309760 [cLEY-26-F10]">
      <seq>tttgtatgtgcactctcaatctaacgagaacccggtgctgatcctgaaattcgtgtacaggcgctagaggctatttatttgctcatattacaggaagctggcagaagagcattttggtcagtgaatggtccccggatattgcaagtgggctatgcagacgaggatgatcctaaagcaatggaagcatatgagcgagctggctccttgctgattcaagagagcggcctcgatgaagaattaacagatacgtcttcgttagcagagacatcttcgtagacatcctactttcttgctggttttgattctacaatagcaacgagttccaacaatcaattagacaatctgcaggttgcttaaaagtagtcaagctctatagaagtggaaggtccaaagtgtactttgaattatgatatttttagggtttgttgtcgccgggttaggtatgatcctcttaaaggttgttatatcaaagactcgggtgatgtattccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="144602" stop="142877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144303" g_stop="144211" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144210" i_stop="143673" i_length="538">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143672" g_stop="143559" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="207" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="143558" i_stop="143461" i_length="98">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143460" g_stop="143177" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="491" r_length="284" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E309760" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144303" e_stop="144211"/>
          <exon e_start="143672" e_stop="143559"/>
          <exon e_start="143460" e_stop="143177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCAAGTGCACTCTCAATCGAACGAGAACCCGTTACTGATCCTGAAATTCGTGTACAGGCGCTAGAGGCTATTTATTTGCTCATATTACAGGTATAGTCTGAACTTATTCTCTGTATGTGCTTCATTTGCTTATCTTAATCCTTACAGCTGTGATAATAAGCAGCACATCTTATAGCTTTTCAAGATCGGAGTCTATATCCAGCCACCTGAAATAGTAGCTCCTCTTCTTCTACATAGTTGATTATCTCAAAAGTGTTTTACTTTTAGATGTGTGGATAGAAGGAACTAGGCAGCTATCGTTCTGTGTAATGGAACCATTTAATCAAGCCATTCATCACTTTTTGGAACTTAAACTATAACCACACGCACAAAAAAAGTTTTTGACCAATTGTAGAGGATGGTTGTCCAAGAACAGCACTCTTTGTTTTTGGTCCATACAAGTTTATAAAGGAAATCTTGTGTGTATGAATTGATCATTTCTTCTACTCTGTCAGATCGCCAAATCATTGTACCATTAGTAGTTCACGAATCCCTTCTACTTGCTAGTTGCTGCGTTTGTCCTATCAAACAACAGATTTTATTGTCCGGGGAAGCTTTCCTCTGTATGATATGCTCGAATTGATTGTAGGAAGCTGGCAGAAGAGCATTTTGGTCAGTGAATGGTCCCCGGATATTGCAAGTGGGCTATGCAGACGAGGATGATCCTAAAGCAATGGAAGCATATGAGCGAGCTGGCTCCTTGGTATTTCCAAACTGCAGCCTATCATCCGTCAAGTCTCTTCTGTCATATGAAATATATCTTTTCACTGTCCTAACCTGAATTCTTCTGAATGTTAACAGCTGATTCAAGAGAGCGGCCTCGATGAAGAATTAACAGATACGTCTTCGTTAGCAGAGACATCTTCGTAGACATCCTACTTTCTTGCTGGTTTTGATTCTACAATAGCAACGAGTTCCAACAATCAATTAGACAATCTGCAGGTTGCTTAAGAGTAGTCAAGCTCTATAGAAGTGGAAGGTCCAAAGTGTACTTTGAATTATTATATTTTTTGGGTTTCTTGTCGCCGGGTTAGTTATGATCCTCTTAAAGGTTGTTATATCAAGGACTCGGGTGATGTATTCCC</genome_strand>
        <mrna_strand>TTTGTATGTGCACTCTCAATCTAACGAGAACCCGGTGCTGATCCTGAAATTCGTGTACAGGCGCTAGAGGCTATTTATTTGCTCATATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGGCAGAAGAGCATTTTGGTCAGTGAATGGTCCCCGGATATTGCAAGTGGGCTATGCAGACGAGGATGATCCTAAAGCAATGGAAGCATATGAGCGAGCTGGCTCCTTG..................................................................................................CTGATTCAAGAGAGCGGCCTCGATGAAGAATTAACAGATACGTCTTCGTTAGCAGAGACATCTTCGTAGACATCCTACTTTCTTGCTGGTTTTGATTCTACAATAGCAACGAGTTCCAACAATCAATTAGACAATCTGCAGGTTGCTTAAAAGTAGTCAAGCTCTATAGAAGTGGAAGGTCCAAAGTGTACTTTGAATTATGATATTTTTAGGGTTTGTTGTCGCCGGGTTAGGTATGATCCTCTTAAAGGTTGTTATATCAAAGACTCGGGTGATGTATTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618148" ref_strand="+" ref_description="SGN-E618148 [68823]">
      <seq>atgcatggcttatatgtcatgaaacttgtgagatcattttgttcgtcctcctgtgagggaaaagttgatccctttgaacatgtggcttctgtacttgtcaacatttctaagaaggaagatgggagaaagcttctgcttgatcaaaaacgatgcctactaaagcaaatagtccggaatgattctaagagcttgttgcgaaagagaggggtcgcaggaaccatccgcaactgctgctttgaagcggagaatcagctgcaaaatttgcttctgatttctgaattcttatggccagctctgctcctgcctgttgctggaaataaggtctatagtgaggaagacactaggaaaatgccactagagcttgcaagtgcactctcaatcgaacgagaacccgttactgatcctgaaattcgtgtacaggttctagaggctatttatttgctcatattacaggaagcaggcagaagagcattttggtcagtgaatggtccccggatattgcaagtgggctatgcagacgaggatgatcctaaagcaatggaagcatatgagcgagctggctccttgctgattcaagagagtggcctcgatgaagaattaacagagacatcttcgtagacatcctgctttcttgctggttttgatactgcgatagcaacgagttctaacaatcaatcagacaaactgcaggttgcttagagtattcaagcactaaagaagtgggaaggtccaaaatgtactttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="147462" stop="142966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147162" g_stop="147099" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="147098" i_stop="145774" i_length="1325">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145773" g_stop="145631" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="207" r_length="143" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145630" i_stop="145363" i_length="268">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.933" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145362" g_stop="145249" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="321" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145248" i_stop="144343" i_length="906">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144342" g_stop="144211" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="453" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="144210" i_stop="143673" i_length="538">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="143672" g_stop="143559" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="567" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="143558" i_stop="143461" i_length="98">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="143460" g_stop="143265" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="745" r_length="178" r_score="0.827"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E618148" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.024" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147162" e_stop="147099"/>
          <exon e_start="145773" e_stop="145631"/>
          <exon e_start="145362" e_stop="145249"/>
          <exon e_start="144342" e_stop="144211"/>
          <exon e_start="143672" e_stop="143559"/>
          <exon e_start="143460" e_stop="143265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCATGGTTTATATGTCATGAAACTTGTGAGATCATTTTGTTCGTCCTCCTGTGAGGGAAAAGGTATGTTCAATTATCGTTCTTTTTCCCTTTTATCCAGTTTGATTGTTTTGTGTGTTTAAGTGCTTTGATACTGTAGTTCCTGTCACTGTTATCAAGCACAAAAAAGCTCTAAGGTCCATTGGATCTTTAAGCGCAAATAAAGTGTGATTGAAAAAATGCACAAAGTGAGAAAAAAATACAAATATATATGTTAGTCTAAGACTAATAATTATAAGCATGAATAACAAATATATGAACAAGGAAATTCAACTTTTTTATGATAAAGTGAAATATCAATGTTTAGTGTCGTCTCTTTAGAAGAGGCTCATTGGCAAGGAAAAGTTTGTCCTAGAACCTTGATGACGTCACTGAAGCGCACATTAAGCTAGGTGAAGCGCTCAACACGTTTTGAGCCTCACTTCAGGGCTTAAGCGTGCCTTTGACTTGACAACTGGTCCATAGAACTAAGAGCGAAAATGAAACGACTACAGCTGAACTCAGATACGCCCCTGCTTAGCTTGTACAGAAAGTGAGAACCTGGAGGGTGCTTGTTTCGTGATCATTCATCCAAATTGGTTACTTGAACTAAATTGATTGCCTAGCTAGAGAACTCGACGTAAATTCACCTTAGTCAGCTCAAGATGGATAACAAATCTTAGTCAATCATTTGTTTTCTGAGAATGGTAAAATATCTAAGTCAACAAATCAGTGTTGTAAATTTTCATGGATTTCTTATCTACTTAAAGGATTGACTCAAAAACCTTGAAACCTGGAGCACAAGTTCTATCCGTAATTGGTCCACTGAGCATTAAATTTGTCCAGATGTGTGTCATGTGATTTTCTGTGTTTTATGAGAAAGGTGAATCCTCTATTGAGAAGCAAGAGACTTAGCAAACATTATGGGGAAGAAGAATCTTTTATGATTGAAGTACTTACTTCACTAAATTTTGGGTGCTATAAGACTCGGTTAGAAAATATTCGGCTGTGGATGAGCAATTATGTGTAAAGTCTGTCTGTTTTACGATAATACTAGTTGGATTCTGTCCTGGGTTTCAATCATGATAGAGCTTTTTCTCAGCATTTACTTGCTTAGGGGAAGTTAAAAGTGTAGCAAAATATATTATTTCAAGATTCTAGTACATGAAAAGTATCTTTTGGCATGTGATGTGTTGAAATGTCTGATCCTCTCATCGGAGAACTTACGTTGTTAGTGAAGACGTCCTAACTTGAATATATCTCCAAGATGATGCATGTTTAACTCAAACAAGAAATTATTGCCTTAACTTTCCGTATTATCTATTATCTTTGTCGTTATTACCACATATTTCCTTTTTCCTTGTGATCAGTTGATCCCTTTGAACATGTGGCTTCTGTACTTGTCAACATTTCTAAGAAGGAACATGGGAGAAAGCTTCTGCTTGATCAAAAACGATGCCTACTAAAGCAAATAGTCCGTAATGATTCTAAGAGCTTGTTACGAAAGAGAGGGGTATGTGGTAGGATATTTTCAGTTCAAGATGGCTATTTTCATGAATATATGGACTTCTGCTTTAAAGTTAATTATTTGAATTCAAAATGAAAAAAGGGAAATGTTTCAAATTCTGTCATCAAGCACCAATATATGTATTTAGTGCCTTCTAGAATGAGCAATTTGGCTTGATCCAGCTTTTTTATAGTATTGTTTAAAAGCTTTATTTTACAATCATGTAATAAGCAAAAGTTTAGCAGGAAAACTTGTGCACTGATTTTGGATACAGGTCGCAGGAACCATCCGCAACTGCTGCTTCGAAGCTGAGAATCAGCTGCAAAATTTGCTTCTGATTTCTGAATTCTTATGGCCAGCTCTGCTCCTGCCTGTTGCTGGAAATAAGGTGACTTTCACCTATTTAAGTTAGATGTCAATAATAATTCATTTATTTCTACAGTACACTTCAAATCTATCTGTAATTAGGACTTGAAAGAATGGATGTGTCTTTGCCTTTTACTGTCACATCACATTTCTTTGTTTCTGTTTCTTAGAACTTGTTAGAGACCTGTAAAGCTATTTTTTCCATCATCTCAAAGTCAGTATTATTATGCTCGATGGAGATCTATTATTTAATTGTTCTTCCTCTCTGATTGAAATACCTCAAGCAAGTGACGGAATAGATAAGTTCAACCAGATAATGTGAAATCCGAAAACTAAGAAATGTTGTTTGTGATCGAGAATTCACTCTGACCATCAGGTAAATGGTTCTTATTTTAATGGAATAGGAAAGCTCCCATCTTTGGTTAAGGACTGTCTACAAAGATTTCTTTCTACAAGTATACCGAGAGTTACTATGTGTATTCTTGATATCAGTGTGTCATTACTTAATGTACACAAAAGGGAATGGTTTGCTGACTGAGTGTGCTAAGCCTTAATCTGGTAACCTGAAGGCCTTAGAAGATCCATTTCAATAGAAAAACAAAGTTAGTGAGGAGCAAAGAGAATAAATTTCAAATGGGAATAAAGGTGCAGATGGCGCTGAGAATCATTTTTATTTGGTTCGCTGCTTGGTTAAAGGCTAAAAATGCTTAATTTAGATTTTCTATTAAGTTTCAAATATCTTCCATAACGGAACATTTCTTCTTTCTACCTTTTTGGAACTCTATATTATTTACTTTCTTGCTTTGTCTCCTTCCTAGTCATCTGTAGCTCGCTGTTACAAATATGTCAACTTTAATTTTCTTGTCTCAGTTCTTTATATTCCTTTCCATTTGAATTGAGTATTTTCTTCTGGGCCAACTTCTGACAGGTCTATAGTGAGGAAGACACTCGGAAAATGCCACTAGAGCTTGCAAGTGCACTCTCAATCGAACGAGAACCCGTTACTGATCCTGAAATTCGTGTACAGGCGCTAGAGGCTATTTATTTGCTCATATTACAGGTATAGTCTGAACTTATTCTCTGTATGTGCTTCATTTGCTTATCTTAATCCTTACAGCTGTGATAATAAGCAGCACATCTTATAGCTTTTCAAGATCGGAGTCTATATCCAGCCACCTGAAATAGTAGCTCCTCTTCTTCTACATAGTTGATTATCTCAAAAGTGTTTTACTTTTAGATGTGTGGATAGAAGGAACTAGGCAGCTATCGTTCTGTGTAATGGAACCATTTAATCAAGCCATTCATCACTTTTTGGAACTTAAACTATAACCACACGCACAAAAAAAGTTTTTGACCAATTGTAGAGGATGGTTGTCCAAGAACAGCACTCTTTGTTTTTGGTCCATACAAGTTTATAAAGGAAATCTTGTGTGTATGAATTGATCATTTCTTCTACTCTGTCAGATCGCCAAATCATTGTACCATTAGTAGTTCACGAATCCCTTCTACTTGCTAGTTGCTGCGTTTGTCCTATCAAACAACAGATTTTATTGTCCGGGGAAGCTTTCCTCTGTATGATATGCTCGAATTGATTGTAGGAAGCTGGCAGAAGAGCATTTTGGTCAGTGAATGGTCCCCGGATATTGCAAGTGGGCTATGCAGACGAGGATGATCCTAAAGCAATGGAAGCATATGAGCGAGCTGGCTCCTTGGTATTTCCAAACTGCAGCCTATCATCCGTCAAGTCTCTTCTGTCATATGAAATATATCTTTTCACTGTCCTAACCTGAATTCTTCTGAATGTTAACAGCTGATTCAAGAGAGCGGCCTCGATGAAGAATTAACAGATACGTCTTCGTTAGCAGAGACATCTTCGTAGACATCCTACTTTCTTGCTGGTTTTGATTCTACAATAGCAACGAGTTCCAACAATCAATTAGACAATCTGCAGGTTGCTTAAGAGTAGTCAAGCTCTATAGAAGT-GGAAGGTCCAAAGTGTACTTTGA</genome_strand>
        <mrna_strand>ATGCATGGCTTATATGTCATGAAACTTGTGAGATCATTTTGTTCGTCCTCCTGTGAGGGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCCCTTTGAACATGTGGCTTCTGTACTTGTCAACATTTCTAAGAAGGAAGATGGGAGAAAGCTTCTGCTTGATCAAAAACGATGCCTACTAAAGCAAATAGTCCGGAATGATTCTAAGAGCTTGTTGCGAAAGAGAGGG............................................................................................................................................................................................................................................................................GTCGCAGGAACCATCCGCAACTGCTGCTTTGAAGCGGAGAATCAGCTGCAAAATTTGCTTCTGATTTCTGAATTCTTATGGCCAGCTCTGCTCCTGCCTGTTGCTGGAAATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATAGTGAGGAAGACACTAGGAAAATGCCACTAGAGCTTGCAAGTGCACTCTCAATCGAACGAGAACCCGTTACTGATCCTGAAATTCGTGTACAGGTTCTAGAGGCTATTTATTTGCTCATATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCAGGCAGAAGAGCATTTTGGTCAGTGAATGGTCCCCGGATATTGCAAGTGGGCTATGCAGACGAGGATGATCCTAAAGCAATGGAAGCATATGAGCGAGCTGGCTCCTTG..................................................................................................CTGATTCAAGAGAGTGGCCTCGATGAAGAA-T------TA----------A-CAGAGACATCTTCGTAGACATCCTGCTTTCTTGCTGGTTTTGATACTGCGATAGCAACGAGTTCTAACAATCAATCAGACAAACTGCAGGTTGCTT-AGAGTATTCAAGCACTAAAGAAGTGGGAAGGTCCAAAATGTACTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728500" ref_strand="+" ref_description="SGN-E728500 [LA18AB06]">
      <seq>ggtttctgaacctgcggctcaagcactggtaaatctgtcacaaaagccagagttggcaggtaagatggttgagatgcatatggttaggacatcgatggaaaccctgtacaagcaagattgtgaaatcacaagtctgctgattatgctccttgttaatcttactcagctggatgctggtattgattctttgcttcagtctgcagatgagaagatgcatggtttatatgtcatgaaacttgtgagatcattttgttcgtcctcctgtgagggaaaagttgatccctttgaacatgtggcttctgtacttgtcaacatttctaagaaggaacatgggagaaagcttctgcttgatcaaaaacgatgcctactaaagcaaatagtccgtaatgattctaagagcttgttacgaaagagaggggtcgcaggaaccatccgcaactgctgcttcgaagctgagaatcagctgcaaaatttgcttctgatttctgaattcttatggccagctctgctcctgcctgttgctggaaataaggtctatagtgaggaagacactcggaaaatgccactagagcttgcaagtgcactctcaatcgaacgagaacccgttactgatcctgaaattcgtgtacaggcgctagaggctatttatttgctcatattacaggaagctggcagaagagcattttggtcagtgaatggtccccggatattgcaagtgggctatgcagacgaggatgatcctaaagcaatggaagcatatgagcgagctggctccttgctgattcaagagagcggcctcgatgaagaattancagatacgtcttcgttagcagagacatcttcgtagacatcctactttcttgctggttttgaatctacaatagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="148515" stop="143052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="148215" g_stop="148020" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="148019" i_stop="147178" i_length="842">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="147177" g_stop="147099" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="275" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="147098" i_stop="145774" i_length="1325">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145773" g_stop="145631" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="418" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145630" i_stop="145363" i_length="268">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="145362" g_stop="145249" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="532" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="145248" i_stop="144343" i_length="906">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144342" g_stop="144211" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="664" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144210" i_stop="143673" i_length="538">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="143672" g_stop="143559" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="778" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="143558" i_stop="143461" i_length="98">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="143460" g_stop="143352" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="887" r_length="109" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E728500" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="148215" e_stop="148020"/>
          <exon e_start="147177" e_stop="147099"/>
          <exon e_start="145773" e_stop="145631"/>
          <exon e_start="145362" e_stop="145249"/>
          <exon e_start="144342" e_stop="144211"/>
          <exon e_start="143672" e_stop="143559"/>
          <exon e_start="143460" e_stop="143352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCTGAACCTGCGGCTCAAGCACTGGTAAATCTGTCACAAAAGCCAGAGTTGGCAGGTAAGATGGTTGAGATGCATATGGTTAGGACATCGATGGAAACCCTGTACAAGCAAGATTGTGAAATCACAAGTCTGCTGATTATGCTCCTTGTTAATCTTACTCAGCTGGATGCTGGTATTGATTCTTTGCTTCAGGTTAATCTCATCCTTTTTTTTTCGCACCAACGCTTTAAATGCCTCTTTATTTTTTTATTTTTTATGAATTAAGGTCTTTCTTTAAAAAGGTACAAGTAGATGCAAAACTACAAAAGAAATGAAGTGCAAGATTATTAGCCCCTTTGGCCTTTACAATGTGTCAAACTAAAACTAGGGGCCCAACAAAGTGTGTCCGAACAATGTTCTAGTTAACTTAGTCCAACAAAAAAGATTAAGCAAACATCTGGCTTTGAGAGTATTGAGGTTCCACCAAACATCTTCGATCCCTTTCCCTCCACAACACCAAAACATAATTGCAGGGATCATCACCACATCTTCCTGATGGTCTTATCGACTCTCCTTAAGTTCTTCTTTACGGCAAGTTTAACTTTGAAGCTTCTAATATGTGTCATTATTCTTGTTTATATACTGTCATATAAGTTAAGAAATTGTGTTTTGTATCTTTTCTAATTGATCAATAACGGAGGAAAGTTTCCACACTTAATCTTCCCATTTGTAAATAGAATGGGACAACTTCGCAATTATTAGGTTTTGATTCTGCATTTCCCTCTTCTGTGGTCATTGAATGGCTGAAGAAAGAAATTAAAAAATGCCTGTACAGAAATTGAAGAAAATTTTGATGACTGAGACACTAGAGGAACAAGAAGAGTTCTATAGATATCTTAAAACACTTCTTACACTTTCTACCTGCTGTTAGGTTGTGGTCATTTGGTTCTCCACAATTAAAATGGCTAAGTTGAATACCGGTTTCTTTTACACCGTCATTAAAAAAATATTGGTTTCTTATGCTTATTATGCTGATTGCTTTCCGTGATTGGCAGTCTGCAGATGAGAAGATGCATGGTTTATATGTCATGAAACTTGTGAGATCATTTTGTTCGTCCTCCTGTGAGGGAAAAGGTATGTTCAATTATCGTTCTTTTTCCCTTTTATCCAGTTTGATTGTTTTGTGTGTTTAAGTGCTTTGATACTGTAGTTCCTGTCACTGTTATCAAGCACAAAAAAGCTCTAAGGTCCATTGGATCTTTAAGCGCAAATAAAGTGTGATTGAAAAAATGCACAAAGTGAGAAAAAAATACAAATATATATGTTAGTCTAAGACTAATAATTATAAGCATGAATAACAAATATATGAACAAGGAAATTCAACTTTTTTATGATAAAGTGAAATATCAATGTTTAGTGTCGTCTCTTTAGAAGAGGCTCATTGGCAAGGAAAAGTTTGTCCTAGAACCTTGATGACGTCACTGAAGCGCACATTAAGCTAGGTGAAGCGCTCAACACGTTTTGAGCCTCACTTCAGGGCTTAAGCGTGCCTTTGACTTGACAACTGGTCCATAGAACTAAGAGCGAAAATGAAACGACTACAGCTGAACTCAGATACGCCCCTGCTTAGCTTGTACAGAAAGTGAGAACCTGGAGGGTGCTTGTTTCGTGATCATTCATCCAAATTGGTTACTTGAACTAAATTGATTGCCTAGCTAGAGAACTCGACGTAAATTCACCTTAGTCAGCTCAAGATGGATAACAAATCTTAGTCAATCATTTGTTTTCTGAGAATGGTAAAATATCTAAGTCAACAAATCAGTGTTGTAAATTTTCATGGATTTCTTATCTACTTAAAGGATTGACTCAAAAACCTTGAAACCTGGAGCACAAGTTCTATCCGTAATTGGTCCACTGAGCATTAAATTTGTCCAGATGTGTGTCATGTGATTTTCTGTGTTTTATGAGAAAGGTGAATCCTCTATTGAGAAGCAAGAGACTTAGCAAACATTATGGGGAAGAAGAATCTTTTATGATTGAAGTACTTACTTCACTAAATTTTGGGTGCTATAAGACTCGGTTAGAAAATATTCGGCTGTGGATGAGCAATTATGTGTAAAGTCTGTCTGTTTTACGATAATACTAGTTGGATTCTGTCCTGGGTTTCAATCATGATAGAGCTTTTTCTCAGCATTTACTTGCTTAGGGGAAGTTAAAAGTGTAGCAAAATATATTATTTCAAGATTCTAGTACATGAAAAGTATCTTTTGGCATGTGATGTGTTGAAATGTCTGATCCTCTCATCGGAGAACTTACGTTGTTAGTGAAGACGTCCTAACTTGAATATATCTCCAAGATGATGCATGTTTAACTCAAACAAGAAATTATTGCCTTAACTTTCCGTATTATCTATTATCTTTGTCGTTATTACCACATATTTCCTTTTTCCTTGTGATCAGTTGATCCCTTTGAACATGTGGCTTCTGTACTTGTCAACATTTCTAAGAAGGAACATGGGAGAAAGCTTCTGCTTGATCAAAAACGATGCCTACTAAAGCAAATAGTCCGTAATGATTCTAAGAGCTTGTTACGAAAGAGAGGGGTATGTGGTAGGATATTTTCAGTTCAAGATGGCTATTTTCATGAATATATGGACTTCTGCTTTAAAGTTAATTATTTGAATTCAAAATGAAAAAAGGGAAATGTTTCAAATTCTGTCATCAAGCACCAATATATGTATTTAGTGCCTTCTAGAATGAGCAATTTGGCTTGATCCAGCTTTTTTATAGTATTGTTTAAAAGCTTTATTTTACAATCATGTAATAAGCAAAAGTTTAGCAGGAAAACTTGTGCACTGATTTTGGATACAGGTCGCAGGAACCATCCGCAACTGCTGCTTCGAAGCTGAGAATCAGCTGCAAAATTTGCTTCTGATTTCTGAATTCTTATGGCCAGCTCTGCTCCTGCCTGTTGCTGGAAATAAGGTGACTTTCACCTATTTAAGTTAGATGTCAATAATAATTCATTTATTTCTACAGTACACTTCAAATCTATCTGTAATTAGGACTTGAAAGAATGGATGTGTCTTTGCCTTTTACTGTCACATCACATTTCTTTGTTTCTGTTTCTTAGAACTTGTTAGAGACCTGTAAAGCTATTTTTTCCATCATCTCAAAGTCAGTATTATTATGCTCGATGGAGATCTATTATTTAATTGTTCTTCCTCTCTGATTGAAATACCTCAAGCAAGTGACGGAATAGATAAGTTCAACCAGATAATGTGAAATCCGAAAACTAAGAAATGTTGTTTGTGATCGAGAATTCACTCTGACCATCAGGTAAATGGTTCTTATTTTAATGGAATAGGAAAGCTCCCATCTTTGGTTAAGGACTGTCTACAAAGATTTCTTTCTACAAGTATACCGAGAGTTACTATGTGTATTCTTGATATCAGTGTGTCATTACTTAATGTACACAAAAGGGAATGGTTTGCTGACTGAGTGTGCTAAGCCTTAATCTGGTAACCTGAAGGCCTTAGAAGATCCATTTCAATAGAAAAACAAAGTTAGTGAGGAGCAAAGAGAATAAATTTCAAATGGGAATAAAGGTGCAGATGGCGCTGAGAATCATTTTTATTTGGTTCGCTGCTTGGTTAAAGGCTAAAAATGCTTAATTTAGATTTTCTATTAAGTTTCAAATATCTTCCATAACGGAACATTTCTTCTTTCTACCTTTTTGGAACTCTATATTATTTACTTTCTTGCTTTGTCTCCTTCCTAGTCATCTGTAGCTCGCTGTTACAAATATGTCAACTTTAATTTTCTTGTCTCAGTTCTTTATATTCCTTTCCATTTGAATTGAGTATTTTCTTCTGGGCCAACTTCTGACAGGTCTATAGTGAGGAAGACACTCGGAAAATGCCACTAGAGCTTGCAAGTGCACTCTCAATCGAACGAGAACCCGTTACTGATCCTGAAATTCGTGTACAGGCGCTAGAGGCTATTTATTTGCTCATATTACAGGTATAGTCTGAACTTATTCTCTGTATGTGCTTCATTTGCTTATCTTAATCCTTACAGCTGTGATAATAAGCAGCACATCTTATAGCTTTTCAAGATCGGAGTCTATATCCAGCCACCTGAAATAGTAGCTCCTCTTCTTCTACATAGTTGATTATCTCAAAAGTGTTTTACTTTTAGATGTGTGGATAGAAGGAACTAGGCAGCTATCGTTCTGTGTAATGGAACCATTTAATCAAGCCATTCATCACTTTTTGGAACTTAAACTATAACCACACGCACAAAAAAAGTTTTTGACCAATTGTAGAGGATGGTTGTCCAAGAACAGCACTCTTTGTTTTTGGTCCATACAAGTTTATAAAGGAAATCTTGTGTGTATGAATTGATCATTTCTTCTACTCTGTCAGATCGCCAAATCATTGTACCATTAGTAGTTCACGAATCCCTTCTACTTGCTAGTTGCTGCGTTTGTCCTATCAAACAACAGATTTTATTGTCCGGGGAAGCTTTCCTCTGTATGATATGCTCGAATTGATTGTAGGAAGCTGGCAGAAGAGCATTTTGGTCAGTGAATGGTCCCCGGATATTGCAAGTGGGCTATGCAGACGAGGATGATCCTAAAGCAATGGAAGCATATGAGCGAGCTGGCTCCTTGGTATTTCCAAACTGCAGCCTATCATCCGTCAAGTCTCTTCTGTCATATGAAATATATCTTTTCACTGTCCTAACCTGAATTCTTCTGAATGTTAACAGCTGATTCAAGAGAGCGGCCTCGATGAAGAATTAACAGATACGTCTTCGTTAGCAGAGACATCTTCGTAGACATCCTACTTTCTTGCTGGTTTTGATTCTACAATAGCAA</genome_strand>
        <mrna_strand>GGTTTCTGAACCTGCGGCTCAAGCACTGGTAAATCTGTCACAAAAGCCAGAGTTGGCAGGTAAGATGGTTGAGATGCATATGGTTAGGACATCGATGGAAACCCTGTACAAGCAAGATTGTGAAATCACAAGTCTGCTGATTATGCTCCTTGTTAATCTTACTCAGCTGGATGCTGGTATTGATTCTTTGCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAGATGAGAAGATGCATGGTTTATATGTCATGAAACTTGTGAGATCATTTTGTTCGTCCTCCTGTGAGGGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCCCTTTGAACATGTGGCTTCTGTACTTGTCAACATTTCTAAGAAGGAACATGGGAGAAAGCTTCTGCTTGATCAAAAACGATGCCTACTAAAGCAAATAGTCCGTAATGATTCTAAGAGCTTGTTACGAAAGAGAGGG............................................................................................................................................................................................................................................................................GTCGCAGGAACCATCCGCAACTGCTGCTTCGAAGCTGAGAATCAGCTGCAAAATTTGCTTCTGATTTCTGAATTCTTATGGCCAGCTCTGCTCCTGCCTGTTGCTGGAAATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATAGTGAGGAAGACACTCGGAAAATGCCACTAGAGCTTGCAAGTGCACTCTCAATCGAACGAGAACCCGTTACTGATCCTGAAATTCGTGTACAGGCGCTAGAGGCTATTTATTTGCTCATATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGGCAGAAGAGCATTTTGGTCAGTGAATGGTCCCCGGATATTGCAAGTGGGCTATGCAGACGAGGATGATCCTAAAGCAATGGAAGCATATGAGCGAGCTGGCTCCTTG..................................................................................................CTGATTCAAGAGAGCGGCCTCGATGAAGAATTANCAGATACGTCTTCGTTAGCAGAGACATCTTCGTAGACATCCTACTTTCTTGCTGGTTTTGAATCTACAATAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727198" ref_strand="+" ref_description="SGN-E727198 [LA14AB01]">
      <seq>catgtgcttggaatctcttggcaagtattctaacgtcgtgcttccttctctgtctcgccttcttggtgaaaaaaaggtggtttctgaacctgcggctcaagcactggtaaatctgtcacaaaagccagagttggcaggtaagatggttgagatgcatatggttaggacatcgatggaaaccctgtacaagcaagattgtgaaatcacaagtctgctgattatgctccttgttaatcttactcagctggatgctggtattgattctttgcttcagtctgcagatgagaagatgcatggtttatatgtcatgaaacttgtgagatcattttgttcgtcctcctgtgagggaaaagttgatccctttgaacatgtggcttctgtacttgtcaacatttctaagaaggaacatgggagaaagcttctgcttgatcaaaaacgatgcctactaaagcaaatagtccgtaatgattctaagagcttgttacgaaagagaggggtcgcaggaaccatccgcaactgctgcttcgaagctgagaatcagctgcaaaatttgcttctgatttctgaattcttatggccagctctgctcctgcctgttgctggaaataaggtctatagtgaggaagacactcggaaaatgccactagagcttgcaagtgcactctcaatcgaacgagaacccgttactgatcctgaaattcgtgtacaggcgctagaggctatttatttgctcatattacaggaagctggcagaagagcattttggtcagtgaatggtccccggatattgcaagtgggctatgcagacgaagatgatcctaaagcaatggaagcatatgagcgagctggctccttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="149546" stop="143257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149247" g_stop="149173" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="149172" i_stop="148218" i_length="955">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148217" g_stop="148020" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="274" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="148019" i_stop="147178" i_length="842">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="147177" g_stop="147099" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="353" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="147098" i_stop="145774" i_length="1325">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="145773" g_stop="145631" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="496" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="145630" i_stop="145363" i_length="268">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="145362" g_stop="145249" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="610" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="145248" i_stop="144343" i_length="906">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144342" g_stop="144211" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="742" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="144210" i_stop="143673" i_length="538">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="143672" g_stop="143559" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="856" r_length="114" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E727198" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149247" e_stop="149173"/>
          <exon e_start="148217" e_stop="148020"/>
          <exon e_start="147177" e_stop="147099"/>
          <exon e_start="145773" e_stop="145631"/>
          <exon e_start="145362" e_stop="145249"/>
          <exon e_start="144342" e_stop="144211"/>
          <exon e_start="143672" e_stop="143559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATG-GCTTGGAATCTCTTGGCAAGTATTCTAACGTCGTGCTTCCTTCTCTGTCTCGCCTTCTTGGTGAAAAAAAGGTACCAGTATCTTCTAAGATGTGTGATTACACCAATAAAGTTCATGTTATGGATGCTTTTTTGTTAAAACAAATTAACCCTTTTCTTCAGAGTTATAAGTAGCATTTCAACTTTTGGAAATCCCCCCACAACAGAAAATTCATAAATAAATATATTTTTTTTACTGTTACAATGACTGGATGTTTGCAATATTTTCTGTAACATTTAAAGAATCTTACCACGGTCAAAATAGATCAGATATTTGGAAGGAGGGATTAGTTCTTATCTGTGTAAACTTGAACTGGTGTTGTTCATATTGATAGTTGTGTACACTATGCCTAACCATCCATATACTAACATGGTGATAGAGCAATGATTTAGAAACTTCTATTTTCCCCTTTTTTTGAAGGAAAAAAAAAGACTTTTGAAAACACCAAAGTTCACTGTGCAAACACTAACTCACTGCTATAGAAATGATGTTTTAAATATGACTTTTGAAAGATAAGAAACAAGCATTACGTTATAGTACCGAAGTTCACTATGCAAAGTTAAACTCAATTTTTGCAAACACTTTATTACAATTTTTTTTAGAAAGACTATACCAAAAAATTAAACTGTGCACAAAACCTTTTTTTTTAAAAAATCATTCCTAACATAACGTTATGAGCTAGAACAAGACAAAGCTGAATGAGATCTCTTGAAAATATGAACCTTTCTGAATTGATGGATACACATATGGCATCACTTTCTTTCTTGTGAAGCCCTTGTTTTCGTTGCATACTATTTGTCCGAAAATTTGACAAATTTATTGTTGATTAATTCATACCATGACCATGGTTTGTCTTCCTGAGATCTTTTATCAAACTCAATTTATTGACATGTATGTAATATTTTTCGTGTATTGATACTTATACTATGCAGTAGCCTCCAGAAAGCCTTTTTAAATTCTTTTTTTTTTATCAACAATACCATTCAGGTGGTTTCTGAACCTGCGGCTCAAGCACTGGTAAATCTGTCACAAAAGCCAGAGTTGGCAGGTAAGATGGTTGAGATGCATATGGTTAGGACATCGATGGAAACCCTGTACAAGCAAGATTGTGAAATCACAAGTCTGCTGATTATGCTCCTTGTTAATCTTACTCAGCTGGATGCTGGTATTGATTCTTTGCTTCAGGTTAATCTCATCCTTTTTTTTTCGCACCAACGCTTTAAATGCCTCTTTATTTTTTTATTTTTTATGAATTAAGGTCTTTCTTTAAAAAGGTACAAGTAGATGCAAAACTACAAAAGAAATGAAGTGCAAGATTATTAGCCCCTTTGGCCTTTACAATGTGTCAAACTAAAACTAGGGGCCCAACAAAGTGTGTCCGAACAATGTTCTAGTTAACTTAGTCCAACAAAAAAGATTAAGCAAACATCTGGCTTTGAGAGTATTGAGGTTCCACCAAACATCTTCGATCCCTTTCCCTCCACAACACCAAAACATAATTGCAGGGATCATCACCACATCTTCCTGATGGTCTTATCGACTCTCCTTAAGTTCTTCTTTACGGCAAGTTTAACTTTGAAGCTTCTAATATGTGTCATTATTCTTGTTTATATACTGTCATATAAGTTAAGAAATTGTGTTTTGTATCTTTTCTAATTGATCAATAACGGAGGAAAGTTTCCACACTTAATCTTCCCATTTGTAAATAGAATGGGACAACTTCGCAATTATTAGGTTTTGATTCTGCATTTCCCTCTTCTGTGGTCATTGAATGGCTGAAGAAAGAAATTAAAAAATGCCTGTACAGAAATTGAAGAAAATTTTGATGACTGAGACACTAGAGGAACAAGAAGAGTTCTATAGATATCTTAAAACACTTCTTACACTTTCTACCTGCTGTTAGGTTGTGGTCATTTGGTTCTCCACAATTAAAATGGCTAAGTTGAATACCGGTTTCTTTTACACCGTCATTAAAAAAATATTGGTTTCTTATGCTTATTATGCTGATTGCTTTCCGTGATTGGCAGTCTGCAGATGAGAAGATGCATGGTTTATATGTCATGAAACTTGTGAGATCATTTTGTTCGTCCTCCTGTGAGGGAAAAGGTATGTTCAATTATCGTTCTTTTTCCCTTTTATCCAGTTTGATTGTTTTGTGTGTTTAAGTGCTTTGATACTGTAGTTCCTGTCACTGTTATCAAGCACAAAAAAGCTCTAAGGTCCATTGGATCTTTAAGCGCAAATAAAGTGTGATTGAAAAAATGCACAAAGTGAGAAAAAAATACAAATATATATGTTAGTCTAAGACTAATAATTATAAGCATGAATAACAAATATATGAACAAGGAAATTCAACTTTTTTATGATAAAGTGAAATATCAATGTTTAGTGTCGTCTCTTTAGAAGAGGCTCATTGGCAAGGAAAAGTTTGTCCTAGAACCTTGATGACGTCACTGAAGCGCACATTAAGCTAGGTGAAGCGCTCAACACGTTTTGAGCCTCACTTCAGGGCTTAAGCGTGCCTTTGACTTGACAACTGGTCCATAGAACTAAGAGCGAAAATGAAACGACTACAGCTGAACTCAGATACGCCCCTGCTTAGCTTGTACAGAAAGTGAGAACCTGGAGGGTGCTTGTTTCGTGATCATTCATCCAAATTGGTTACTTGAACTAAATTGATTGCCTAGCTAGAGAACTCGACGTAAATTCACCTTAGTCAGCTCAAGATGGATAACAAATCTTAGTCAATCATTTGTTTTCTGAGAATGGTAAAATATCTAAGTCAACAAATCAGTGTTGTAAATTTTCATGGATTTCTTATCTACTTAAAGGATTGACTCAAAAACCTTGAAACCTGGAGCACAAGTTCTATCCGTAATTGGTCCACTGAGCATTAAATTTGTCCAGATGTGTGTCATGTGATTTTCTGTGTTTTATGAGAAAGGTGAATCCTCTATTGAGAAGCAAGAGACTTAGCAAACATTATGGGGAAGAAGAATCTTTTATGATTGAAGTACTTACTTCACTAAATTTTGGGTGCTATAAGACTCGGTTAGAAAATATTCGGCTGTGGATGAGCAATTATGTGTAAAGTCTGTCTGTTTTACGATAATACTAGTTGGATTCTGTCCTGGGTTTCAATCATGATAGAGCTTTTTCTCAGCATTTACTTGCTTAGGGGAAGTTAAAAGTGTAGCAAAATATATTATTTCAAGATTCTAGTACATGAAAAGTATCTTTTGGCATGTGATGTGTTGAAATGTCTGATCCTCTCATCGGAGAACTTACGTTGTTAGTGAAGACGTCCTAACTTGAATATATCTCCAAGATGATGCATGTTTAACTCAAACAAGAAATTATTGCCTTAACTTTCCGTATTATCTATTATCTTTGTCGTTATTACCACATATTTCCTTTTTCCTTGTGATCAGTTGATCCCTTTGAACATGTGGCTTCTGTACTTGTCAACATTTCTAAGAAGGAACATGGGAGAAAGCTTCTGCTTGATCAAAAACGATGCCTACTAAAGCAAATAGTCCGTAATGATTCTAAGAGCTTGTTACGAAAGAGAGGGGTATGTGGTAGGATATTTTCAGTTCAAGATGGCTATTTTCATGAATATATGGACTTCTGCTTTAAAGTTAATTATTTGAATTCAAAATGAAAAAAGGGAAATGTTTCAAATTCTGTCATCAAGCACCAATATATGTATTTAGTGCCTTCTAGAATGAGCAATTTGGCTTGATCCAGCTTTTTTATAGTATTGTTTAAAAGCTTTATTTTACAATCATGTAATAAGCAAAAGTTTAGCAGGAAAACTTGTGCACTGATTTTGGATACAGGTCGCAGGAACCATCCGCAACTGCTGCTTCGAAGCTGAGAATCAGCTGCAAAATTTGCTTCTGATTTCTGAATTCTTATGGCCAGCTCTGCTCCTGCCTGTTGCTGGAAATAAGGTGACTTTCACCTATTTAAGTTAGATGTCAATAATAATTCATTTATTTCTACAGTACACTTCAAATCTATCTGTAATTAGGACTTGAAAGAATGGATGTGTCTTTGCCTTTTACTGTCACATCACATTTCTTTGTTTCTGTTTCTTAGAACTTGTTAGAGACCTGTAAAGCTATTTTTTCCATCATCTCAAAGTCAGTATTATTATGCTCGATGGAGATCTATTATTTAATTGTTCTTCCTCTCTGATTGAAATACCTCAAGCAAGTGACGGAATAGATAAGTTCAACCAGATAATGTGAAATCCGAAAACTAAGAAATGTTGTTTGTGATCGAGAATTCACTCTGACCATCAGGTAAATGGTTCTTATTTTAATGGAATAGGAAAGCTCCCATCTTTGGTTAAGGACTGTCTACAAAGATTTCTTTCTACAAGTATACCGAGAGTTACTATGTGTATTCTTGATATCAGTGTGTCATTACTTAATGTACACAAAAGGGAATGGTTTGCTGACTGAGTGTGCTAAGCCTTAATCTGGTAACCTGAAGGCCTTAGAAGATCCATTTCAATAGAAAAACAAAGTTAGTGAGGAGCAAAGAGAATAAATTTCAAATGGGAATAAAGGTGCAGATGGCGCTGAGAATCATTTTTATTTGGTTCGCTGCTTGGTTAAAGGCTAAAAATGCTTAATTTAGATTTTCTATTAAGTTTCAAATATCTTCCATAACGGAACATTTCTTCTTTCTACCTTTTTGGAACTCTATATTATTTACTTTCTTGCTTTGTCTCCTTCCTAGTCATCTGTAGCTCGCTGTTACAAATATGTCAACTTTAATTTTCTTGTCTCAGTTCTTTATATTCCTTTCCATTTGAATTGAGTATTTTCTTCTGGGCCAACTTCTGACAGGTCTATAGTGAGGAAGACACTCGGAAAATGCCACTAGAGCTTGCAAGTGCACTCTCAATCGAACGAGAACCCGTTACTGATCCTGAAATTCGTGTACAGGCGCTAGAGGCTATTTATTTGCTCATATTACAGGTATAGTCTGAACTTATTCTCTGTATGTGCTTCATTTGCTTATCTTAATCCTTACAGCTGTGATAATAAGCAGCACATCTTATAGCTTTTCAAGATCGGAGTCTATATCCAGCCACCTGAAATAGTAGCTCCTCTTCTTCTACATAGTTGATTATCTCAAAAGTGTTTTACTTTTAGATGTGTGGATAGAAGGAACTAGGCAGCTATCGTTCTGTGTAATGGAACCATTTAATCAAGCCATTCATCACTTTTTGGAACTTAAACTATAACCACACGCACAAAAAAAGTTTTTGACCAATTGTAGAGGATGGTTGTCCAAGAACAGCACTCTTTGTTTTTGGTCCATACAAGTTTATAAAGGAAATCTTGTGTGTATGAATTGATCATTTCTTCTACTCTGTCAGATCGCCAAATCATTGTACCATTAGTAGTTCACGAATCCCTTCTACTTGCTAGTTGCTGCGTTTGTCCTATCAAACAACAGATTTTATTGTCCGGGGAAGCTTTCCTCTGTATGATATGCTCGAATTGATTGTAGGAAGCTGGCAGAAGAGCATTTTGGTCAGTGAATGGTCCCCGGATATTGCAAGTGGGCTATGCAGACGAGGATGATCCTAAAGCAATGGAAGCATATGAGCGAGCTGGCTCCTTG</genome_strand>
        <mrna_strand>CATGTGCTTGGAATCTCTTGGCAAGTATTCTAACGTCGTGCTTCCTTCTCTGTCTCGCCTTCTTGGTGAAAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTCTGAACCTGCGGCTCAAGCACTGGTAAATCTGTCACAAAAGCCAGAGTTGGCAGGTAAGATGGTTGAGATGCATATGGTTAGGACATCGATGGAAACCCTGTACAAGCAAGATTGTGAAATCACAAGTCTGCTGATTATGCTCCTTGTTAATCTTACTCAGCTGGATGCTGGTATTGATTCTTTGCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAGATGAGAAGATGCATGGTTTATATGTCATGAAACTTGTGAGATCATTTTGTTCGTCCTCCTGTGAGGGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCCCTTTGAACATGTGGCTTCTGTACTTGTCAACATTTCTAAGAAGGAACATGGGAGAAAGCTTCTGCTTGATCAAAAACGATGCCTACTAAAGCAAATAGTCCGTAATGATTCTAAGAGCTTGTTACGAAAGAGAGGG............................................................................................................................................................................................................................................................................GTCGCAGGAACCATCCGCAACTGCTGCTTCGAAGCTGAGAATCAGCTGCAAAATTTGCTTCTGATTTCTGAATTCTTATGGCCAGCTCTGCTCCTGCCTGTTGCTGGAAATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATAGTGAGGAAGACACTCGGAAAATGCCACTAGAGCTTGCAAGTGCACTCTCAATCGAACGAGAACCCGTTACTGATCCTGAAATTCGTGTACAGGCGCTAGAGGCTATTTATTTGCTCATATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGGCAGAAGAGCATTTTGGTCAGTGAATGGTCCCCGGATATTGCAAGTGGGCTATGCAGACGAAGATGATCCTAAAGCAATGGAAGCATATGAGCGAGCTGGCTCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460937" ref_strand="+" ref_description="SGN-E460937 [cPRO-33-H6]">
      <seq>gtcgtgcttccctctctgtcttgccttcttggtgaaaaaaaggtggtttctgaacctgcggctcaagcactggtaaatctgtcacaaaagccagagttggcaggtaagatggttgagatgcatatggttaggacatcgatggagaccttgtacaagcaagattgtgaaatcacaagtctgctgattatgctccttgttaatctcacacagctggatgctggtattgattctttgcttcagtctgcagatgagaagatgcatggcttatatgtcatgaaacttgtgagatcattttgttcgtcctcctgtgagggaaaagttgatccctttgaacatgtggcttctgtacttgtcaacatttctaagaaggaagatgggagaaagcttctgcttgatcaaaaacgatgcctactaaagcaaatagtccggaatgattctaagagcttgttgcgaaagagaggggtcgcaggaaccatccgcaactgctgctttgaagcggagaatcagctgcaaaatttgcttctgatttctgaattcttatggccagctctgctcctgcctgttgctggaaataaggtctatagtgaggaagatactcggaaaatgccactagagcttgcaagtgcactctcaatcgaacgagaacccgttactgatcctgaaattcgtgtacaggcggtagaggctatttatttgctcatattacaggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="149514" stop="143908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149214" g_stop="149173" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="149172" i_stop="148218" i_length="955">
            <donor d_prob="0.957" d_score="0.95"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148217" g_stop="148020" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="240" r_length="198" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="148019" i_stop="147178" i_length="842">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="147177" g_stop="147099" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="319" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="147098" i_stop="145774" i_length="1325">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="145773" g_stop="145631" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="462" r_length="143" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="145630" i_stop="145363" i_length="268">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.933" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="145362" g_stop="145249" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="576" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="145248" i_stop="144343" i_length="906">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144342" g_stop="144211" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="708" r_length="132" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E460937" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149214" e_stop="149173"/>
          <exon e_start="148217" e_stop="148020"/>
          <exon e_start="147177" e_stop="147099"/>
          <exon e_start="145773" e_stop="145631"/>
          <exon e_start="145362" e_stop="145249"/>
          <exon e_start="144342" e_stop="144211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTGCTTCCTTCTCTGTCTCGCCTTCTTGGTGAAAAAAAGGTACCAGTATCTTCTAAGATGTGTGATTACACCAATAAAGTTCATGTTATGGATGCTTTTTTGTTAAAACAAATTAACCCTTTTCTTCAGAGTTATAAGTAGCATTTCAACTTTTGGAAATCCCCCCACAACAGAAAATTCATAAATAAATATATTTTTTTTACTGTTACAATGACTGGATGTTTGCAATATTTTCTGTAACATTTAAAGAATCTTACCACGGTCAAAATAGATCAGATATTTGGAAGGAGGGATTAGTTCTTATCTGTGTAAACTTGAACTGGTGTTGTTCATATTGATAGTTGTGTACACTATGCCTAACCATCCATATACTAACATGGTGATAGAGCAATGATTTAGAAACTTCTATTTTCCCCTTTTTTTGAAGGAAAAAAAAAGACTTTTGAAAACACCAAAGTTCACTGTGCAAACACTAACTCACTGCTATAGAAATGATGTTTTAAATATGACTTTTGAAAGATAAGAAACAAGCATTACGTTATAGTACCGAAGTTCACTATGCAAAGTTAAACTCAATTTTTGCAAACACTTTATTACAATTTTTTTTAGAAAGACTATACCAAAAAATTAAACTGTGCACAAAACCTTTTTTTTTAAAAAATCATTCCTAACATAACGTTATGAGCTAGAACAAGACAAAGCTGAATGAGATCTCTTGAAAATATGAACCTTTCTGAATTGATGGATACACATATGGCATCACTTTCTTTCTTGTGAAGCCCTTGTTTTCGTTGCATACTATTTGTCCGAAAATTTGACAAATTTATTGTTGATTAATTCATACCATGACCATGGTTTGTCTTCCTGAGATCTTTTATCAAACTCAATTTATTGACATGTATGTAATATTTTTCGTGTATTGATACTTATACTATGCAGTAGCCTCCAGAAAGCCTTTTTAAATTCTTTTTTTTTTATCAACAATACCATTCAGGTGGTTTCTGAACCTGCGGCTCAAGCACTGGTAAATCTGTCACAAAAGCCAGAGTTGGCAGGTAAGATGGTTGAGATGCATATGGTTAGGACATCGATGGAAACCCTGTACAAGCAAGATTGTGAAATCACAAGTCTGCTGATTATGCTCCTTGTTAATCTTACTCAGCTGGATGCTGGTATTGATTCTTTGCTTCAGGTTAATCTCATCCTTTTTTTTTCGCACCAACGCTTTAAATGCCTCTTTATTTTTTTATTTTTTATGAATTAAGGTCTTTCTTTAAAAAGGTACAAGTAGATGCAAAACTACAAAAGAAATGAAGTGCAAGATTATTAGCCCCTTTGGCCTTTACAATGTGTCAAACTAAAACTAGGGGCCCAACAAAGTGTGTCCGAACAATGTTCTAGTTAACTTAGTCCAACAAAAAAGATTAAGCAAACATCTGGCTTTGAGAGTATTGAGGTTCCACCAAACATCTTCGATCCCTTTCCCTCCACAACACCAAAACATAATTGCAGGGATCATCACCACATCTTCCTGATGGTCTTATCGACTCTCCTTAAGTTCTTCTTTACGGCAAGTTTAACTTTGAAGCTTCTAATATGTGTCATTATTCTTGTTTATATACTGTCATATAAGTTAAGAAATTGTGTTTTGTATCTTTTCTAATTGATCAATAACGGAGGAAAGTTTCCACACTTAATCTTCCCATTTGTAAATAGAATGGGACAACTTCGCAATTATTAGGTTTTGATTCTGCATTTCCCTCTTCTGTGGTCATTGAATGGCTGAAGAAAGAAATTAAAAAATGCCTGTACAGAAATTGAAGAAAATTTTGATGACTGAGACACTAGAGGAACAAGAAGAGTTCTATAGATATCTTAAAACACTTCTTACACTTTCTACCTGCTGTTAGGTTGTGGTCATTTGGTTCTCCACAATTAAAATGGCTAAGTTGAATACCGGTTTCTTTTACACCGTCATTAAAAAAATATTGGTTTCTTATGCTTATTATGCTGATTGCTTTCCGTGATTGGCAGTCTGCAGATGAGAAGATGCATGGTTTATATGTCATGAAACTTGTGAGATCATTTTGTTCGTCCTCCTGTGAGGGAAAAGGTATGTTCAATTATCGTTCTTTTTCCCTTTTATCCAGTTTGATTGTTTTGTGTGTTTAAGTGCTTTGATACTGTAGTTCCTGTCACTGTTATCAAGCACAAAAAAGCTCTAAGGTCCATTGGATCTTTAAGCGCAAATAAAGTGTGATTGAAAAAATGCACAAAGTGAGAAAAAAATACAAATATATATGTTAGTCTAAGACTAATAATTATAAGCATGAATAACAAATATATGAACAAGGAAATTCAACTTTTTTATGATAAAGTGAAATATCAATGTTTAGTGTCGTCTCTTTAGAAGAGGCTCATTGGCAAGGAAAAGTTTGTCCTAGAACCTTGATGACGTCACTGAAGCGCACATTAAGCTAGGTGAAGCGCTCAACACGTTTTGAGCCTCACTTCAGGGCTTAAGCGTGCCTTTGACTTGACAACTGGTCCATAGAACTAAGAGCGAAAATGAAACGACTACAGCTGAACTCAGATACGCCCCTGCTTAGCTTGTACAGAAAGTGAGAACCTGGAGGGTGCTTGTTTCGTGATCATTCATCCAAATTGGTTACTTGAACTAAATTGATTGCCTAGCTAGAGAACTCGACGTAAATTCACCTTAGTCAGCTCAAGATGGATAACAAATCTTAGTCAATCATTTGTTTTCTGAGAATGGTAAAATATCTAAGTCAACAAATCAGTGTTGTAAATTTTCATGGATTTCTTATCTACTTAAAGGATTGACTCAAAAACCTTGAAACCTGGAGCACAAGTTCTATCCGTAATTGGTCCACTGAGCATTAAATTTGTCCAGATGTGTGTCATGTGATTTTCTGTGTTTTATGAGAAAGGTGAATCCTCTATTGAGAAGCAAGAGACTTAGCAAACATTATGGGGAAGAAGAATCTTTTATGATTGAAGTACTTACTTCACTAAATTTTGGGTGCTATAAGACTCGGTTAGAAAATATTCGGCTGTGGATGAGCAATTATGTGTAAAGTCTGTCTGTTTTACGATAATACTAGTTGGATTCTGTCCTGGGTTTCAATCATGATAGAGCTTTTTCTCAGCATTTACTTGCTTAGGGGAAGTTAAAAGTGTAGCAAAATATATTATTTCAAGATTCTAGTACATGAAAAGTATCTTTTGGCATGTGATGTGTTGAAATGTCTGATCCTCTCATCGGAGAACTTACGTTGTTAGTGAAGACGTCCTAACTTGAATATATCTCCAAGATGATGCATGTTTAACTCAAACAAGAAATTATTGCCTTAACTTTCCGTATTATCTATTATCTTTGTCGTTATTACCACATATTTCCTTTTTCCTTGTGATCAGTTGATCCCTTTGAACATGTGGCTTCTGTACTTGTCAACATTTCTAAGAAGGAACATGGGAGAAAGCTTCTGCTTGATCAAAAACGATGCCTACTAAAGCAAATAGTCCGTAATGATTCTAAGAGCTTGTTACGAAAGAGAGGGGTATGTGGTAGGATATTTTCAGTTCAAGATGGCTATTTTCATGAATATATGGACTTCTGCTTTAAAGTTAATTATTTGAATTCAAAATGAAAAAAGGGAAATGTTTCAAATTCTGTCATCAAGCACCAATATATGTATTTAGTGCCTTCTAGAATGAGCAATTTGGCTTGATCCAGCTTTTTTATAGTATTGTTTAAAAGCTTTATTTTACAATCATGTAATAAGCAAAAGTTTAGCAGGAAAACTTGTGCACTGATTTTGGATACAGGTCGCAGGAACCATCCGCAACTGCTGCTTCGAAGCTGAGAATCAGCTGCAAAATTTGCTTCTGATTTCTGAATTCTTATGGCCAGCTCTGCTCCTGCCTGTTGCTGGAAATAAGGTGACTTTCACCTATTTAAGTTAGATGTCAATAATAATTCATTTATTTCTACAGTACACTTCAAATCTATCTGTAATTAGGACTTGAAAGAATGGATGTGTCTTTGCCTTTTACTGTCACATCACATTTCTTTGTTTCTGTTTCTTAGAACTTGTTAGAGACCTGTAAAGCTATTTTTTCCATCATCTCAAAGTCAGTATTATTATGCTCGATGGAGATCTATTATTTAATTGTTCTTCCTCTCTGATTGAAATACCTCAAGCAAGTGACGGAATAGATAAGTTCAACCAGATAATGTGAAATCCGAAAACTAAGAAATGTTGTTTGTGATCGAGAATTCACTCTGACCATCAGGTAAATGGTTCTTATTTTAATGGAATAGGAAAGCTCCCATCTTTGGTTAAGGACTGTCTACAAAGATTTCTTTCTACAAGTATACCGAGAGTTACTATGTGTATTCTTGATATCAGTGTGTCATTACTTAATGTACACAAAAGGGAATGGTTTGCTGACTGAGTGTGCTAAGCCTTAATCTGGTAACCTGAAGGCCTTAGAAGATCCATTTCAATAGAAAAACAAAGTTAGTGAGGAGCAAAGAGAATAAATTTCAAATGGGAATAAAGGTGCAGATGGCGCTGAGAATCATTTTTATTTGGTTCGCTGCTTGGTTAAAGGCTAAAAATGCTTAATTTAGATTTTCTATTAAGTTTCAAATATCTTCCATAACGGAACATTTCTTCTTTCTACCTTTTTGGAACTCTATATTATTTACTTTCTTGCTTTGTCTCCTTCCTAGTCATCTGTAGCTCGCTGTTACAAATATGTCAACTTTAATTTTCTTGTCTCAGTTCTTTATATTCCTTTCCATTTGAATTGAGTATTTTCTTCTGGGCCAACTTCTGACAGGTCTATAGTGAGGAAGACACTCGGAAAATGCCACTAGAGCTTGCAAGTGCACTCTCAATCGAACGAGAACCCGTTACTGATCCTGAAATTCGTGTACAGGCGCTAGAGGCTATTTATTTGCTCATATTACAG</genome_strand>
        <mrna_strand>GTCGTGCTTCCCTCTCTGTCTTGCCTTCTTGGTGAAAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTCTGAACCTGCGGCTCAAGCACTGGTAAATCTGTCACAAAAGCCAGAGTTGGCAGGTAAGATGGTTGAGATGCATATGGTTAGGACATCGATGGAGACCTTGTACAAGCAAGATTGTGAAATCACAAGTCTGCTGATTATGCTCCTTGTTAATCTCACACAGCTGGATGCTGGTATTGATTCTTTGCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAGATGAGAAGATGCATGGCTTATATGTCATGAAACTTGTGAGATCATTTTGTTCGTCCTCCTGTGAGGGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCCCTTTGAACATGTGGCTTCTGTACTTGTCAACATTTCTAAGAAGGAAGATGGGAGAAAGCTTCTGCTTGATCAAAAACGATGCCTACTAAAGCAAATAGTCCGGAATGATTCTAAGAGCTTGTTGCGAAAGAGAGGG............................................................................................................................................................................................................................................................................GTCGCAGGAACCATCCGCAACTGCTGCTTTGAAGCGGAGAATCAGCTGCAAAATTTGCTTCTGATTTCTGAATTCTTATGGCCAGCTCTGCTCCTGCCTGTTGCTGGAAATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATAGTGAGGAAGATACTCGGAAAATGCCACTAGAGCTTGCAAGTGCACTCTCAATCGAACGAGAACCCGTTACTGATCCTGAAATTCGTGTACAGGCGGTAGAGGCTATTTATTTGCTCATATTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727820" ref_strand="+" ref_description="SGN-E727820 [LA15DD04]">
      <seq>cgccaagtgaagaaggaagccattaaatcaaatggcgacggagctagaagaattgattgggtttctatcatccccttctcctccagtgaaaaaaatagcggttgatattgttcgtgattatactggttctgaggatggcttggaatctcttggcaagtattctaacgtcgtgcttccttctctgtctcgccttcttggtgaaaaaaaggtggtttctgaacctgcggctcaagcactggtaaatctgtcacaaaagccagagttggcaggtaagatggttgagatgcatatggttaggacatcgatggaaaccctgtacaagcaagattgtgaaatcacaagtctgctgattatgctccttgttaatcttactcagctggatgctggtattgattctttgcttcagtctgcagatgagaagatgcatggtttatatgtcatgaaacttgtgagatcattttgttcgtcctcctgtgagggaaaagttgatccctttgaacatgtggcttctgtacttgtcaacatttctaagaaggaacatgggagaaagcttctgcttgatcaaaaacgatgcctactaaagcaaatagtccgtaatgattctaagagcttgttacgaaagagaggggtcgcaggaaccatccgcaactgctgcttcgaagctgagaatcagctgcaaaatttgcttctgatttctgaattcttatggccagctctgctcctgcctgttgctggaaataaggtctatagtgaggaagacactcggaaaatgccactagagcttgcaagtgcactctcaatcgaacgagaacccgttactgatcctgaaattcgtgtacaggcgctagaggctaaatttgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="149595" stop="143920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149295" g_stop="149173" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="208" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="149172" i_stop="148218" i_length="955">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148217" g_stop="148020" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="406" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="148019" i_stop="147178" i_length="842">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="147177" g_stop="147099" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="485" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="147098" i_stop="145774" i_length="1325">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="145773" g_stop="145631" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="628" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="145630" i_stop="145363" i_length="268">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="145362" g_stop="145249" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="742" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="145248" i_stop="144343" i_length="906">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144342" g_stop="144220" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="863" r_length="121" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E727820" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149295" e_stop="149173"/>
          <exon e_start="148217" e_stop="148020"/>
          <exon e_start="147177" e_stop="147099"/>
          <exon e_start="145773" e_stop="145631"/>
          <exon e_start="145362" e_stop="145249"/>
          <exon e_start="144342" e_stop="144220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAAAAATAGCGGTTGATATTGTTCGTGATTATACTGGTTCTGAGGATGGCTTGGAATCTCTTGGCAAGTATTCTAACGTCGTGCTTCCTTCTCTGTCTCGCCTTCTTGGTGAAAAAAAGGTACCAGTATCTTCTAAGATGTGTGATTACACCAATAAAGTTCATGTTATGGATGCTTTTTTGTTAAAACAAATTAACCCTTTTCTTCAGAGTTATAAGTAGCATTTCAACTTTTGGAAATCCCCCCACAACAGAAAATTCATAAATAAATATATTTTTTTTACTGTTACAATGACTGGATGTTTGCAATATTTTCTGTAACATTTAAAGAATCTTACCACGGTCAAAATAGATCAGATATTTGGAAGGAGGGATTAGTTCTTATCTGTGTAAACTTGAACTGGTGTTGTTCATATTGATAGTTGTGTACACTATGCCTAACCATCCATATACTAACATGGTGATAGAGCAATGATTTAGAAACTTCTATTTTCCCCTTTTTTTGAAGGAAAAAAAAAGACTTTTGAAAACACCAAAGTTCACTGTGCAAACACTAACTCACTGCTATAGAAATGATGTTTTAAATATGACTTTTGAAAGATAAGAAACAAGCATTACGTTATAGTACCGAAGTTCACTATGCAAAGTTAAACTCAATTTTTGCAAACACTTTATTACAATTTTTTTTAGAAAGACTATACCAAAAAATTAAACTGTGCACAAAACCTTTTTTTTTAAAAAATCATTCCTAACATAACGTTATGAGCTAGAACAAGACAAAGCTGAATGAGATCTCTTGAAAATATGAACCTTTCTGAATTGATGGATACACATATGGCATCACTTTCTTTCTTGTGAAGCCCTTGTTTTCGTTGCATACTATTTGTCCGAAAATTTGACAAATTTATTGTTGATTAATTCATACCATGACCATGGTTTGTCTTCCTGAGATCTTTTATCAAACTCAATTTATTGACATGTATGTAATATTTTTCGTGTATTGATACTTATACTATGCAGTAGCCTCCAGAAAGCCTTTTTAAATTCTTTTTTTTTTATCAACAATACCATTCAGGTGGTTTCTGAACCTGCGGCTCAAGCACTGGTAAATCTGTCACAAAAGCCAGAGTTGGCAGGTAAGATGGTTGAGATGCATATGGTTAGGACATCGATGGAAACCCTGTACAAGCAAGATTGTGAAATCACAAGTCTGCTGATTATGCTCCTTGTTAATCTTACTCAGCTGGATGCTGGTATTGATTCTTTGCTTCAGGTTAATCTCATCCTTTTTTTTTCGCACCAACGCTTTAAATGCCTCTTTATTTTTTTATTTTTTATGAATTAAGGTCTTTCTTTAAAAAGGTACAAGTAGATGCAAAACTACAAAAGAAATGAAGTGCAAGATTATTAGCCCCTTTGGCCTTTACAATGTGTCAAACTAAAACTAGGGGCCCAACAAAGTGTGTCCGAACAATGTTCTAGTTAACTTAGTCCAACAAAAAAGATTAAGCAAACATCTGGCTTTGAGAGTATTGAGGTTCCACCAAACATCTTCGATCCCTTTCCCTCCACAACACCAAAACATAATTGCAGGGATCATCACCACATCTTCCTGATGGTCTTATCGACTCTCCTTAAGTTCTTCTTTACGGCAAGTTTAACTTTGAAGCTTCTAATATGTGTCATTATTCTTGTTTATATACTGTCATATAAGTTAAGAAATTGTGTTTTGTATCTTTTCTAATTGATCAATAACGGAGGAAAGTTTCCACACTTAATCTTCCCATTTGTAAATAGAATGGGACAACTTCGCAATTATTAGGTTTTGATTCTGCATTTCCCTCTTCTGTGGTCATTGAATGGCTGAAGAAAGAAATTAAAAAATGCCTGTACAGAAATTGAAGAAAATTTTGATGACTGAGACACTAGAGGAACAAGAAGAGTTCTATAGATATCTTAAAACACTTCTTACACTTTCTACCTGCTGTTAGGTTGTGGTCATTTGGTTCTCCACAATTAAAATGGCTAAGTTGAATACCGGTTTCTTTTACACCGTCATTAAAAAAATATTGGTTTCTTATGCTTATTATGCTGATTGCTTTCCGTGATTGGCAGTCTGCAGATGAGAAGATGCATGGTTTATATGTCATGAAACTTGTGAGATCATTTTGTTCGTCCTCCTGTGAGGGAAAAGGTATGTTCAATTATCGTTCTTTTTCCCTTTTATCCAGTTTGATTGTTTTGTGTGTTTAAGTGCTTTGATACTGTAGTTCCTGTCACTGTTATCAAGCACAAAAAAGCTCTAAGGTCCATTGGATCTTTAAGCGCAAATAAAGTGTGATTGAAAAAATGCACAAAGTGAGAAAAAAATACAAATATATATGTTAGTCTAAGACTAATAATTATAAGCATGAATAACAAATATATGAACAAGGAAATTCAACTTTTTTATGATAAAGTGAAATATCAATGTTTAGTGTCGTCTCTTTAGAAGAGGCTCATTGGCAAGGAAAAGTTTGTCCTAGAACCTTGATGACGTCACTGAAGCGCACATTAAGCTAGGTGAAGCGCTCAACACGTTTTGAGCCTCACTTCAGGGCTTAAGCGTGCCTTTGACTTGACAACTGGTCCATAGAACTAAGAGCGAAAATGAAACGACTACAGCTGAACTCAGATACGCCCCTGCTTAGCTTGTACAGAAAGTGAGAACCTGGAGGGTGCTTGTTTCGTGATCATTCATCCAAATTGGTTACTTGAACTAAATTGATTGCCTAGCTAGAGAACTCGACGTAAATTCACCTTAGTCAGCTCAAGATGGATAACAAATCTTAGTCAATCATTTGTTTTCTGAGAATGGTAAAATATCTAAGTCAACAAATCAGTGTTGTAAATTTTCATGGATTTCTTATCTACTTAAAGGATTGACTCAAAAACCTTGAAACCTGGAGCACAAGTTCTATCCGTAATTGGTCCACTGAGCATTAAATTTGTCCAGATGTGTGTCATGTGATTTTCTGTGTTTTATGAGAAAGGTGAATCCTCTATTGAGAAGCAAGAGACTTAGCAAACATTATGGGGAAGAAGAATCTTTTATGATTGAAGTACTTACTTCACTAAATTTTGGGTGCTATAAGACTCGGTTAGAAAATATTCGGCTGTGGATGAGCAATTATGTGTAAAGTCTGTCTGTTTTACGATAATACTAGTTGGATTCTGTCCTGGGTTTCAATCATGATAGAGCTTTTTCTCAGCATTTACTTGCTTAGGGGAAGTTAAAAGTGTAGCAAAATATATTATTTCAAGATTCTAGTACATGAAAAGTATCTTTTGGCATGTGATGTGTTGAAATGTCTGATCCTCTCATCGGAGAACTTACGTTGTTAGTGAAGACGTCCTAACTTGAATATATCTCCAAGATGATGCATGTTTAACTCAAACAAGAAATTATTGCCTTAACTTTCCGTATTATCTATTATCTTTGTCGTTATTACCACATATTTCCTTTTTCCTTGTGATCAGTTGATCCCTTTGAACATGTGGCTTCTGTACTTGTCAACATTTCTAAGAAGGAACATGGGAGAAAGCTTCTGCTTGATCAAAAACGATGCCTACTAAAGCAAATAGTCCGTAATGATTCTAAGAGCTTGTTACGAAAGAGAGGGGTATGTGGTAGGATATTTTCAGTTCAAGATGGCTATTTTCATGAATATATGGACTTCTGCTTTAAAGTTAATTATTTGAATTCAAAATGAAAAAAGGGAAATGTTTCAAATTCTGTCATCAAGCACCAATATATGTATTTAGTGCCTTCTAGAATGAGCAATTTGGCTTGATCCAGCTTTTTTATAGTATTGTTTAAAAGCTTTATTTTACAATCATGTAATAAGCAAAAGTTTAGCAGGAAAACTTGTGCACTGATTTTGGATACAGGTCGCAGGAACCATCCGCAACTGCTGCTTCGAAGCTGAGAATCAGCTGCAAAATTTGCTTCTGATTTCTGAATTCTTATGGCCAGCTCTGCTCCTGCCTGTTGCTGGAAATAAGGTGACTTTCACCTATTTAAGTTAGATGTCAATAATAATTCATTTATTTCTACAGTACACTTCAAATCTATCTGTAATTAGGACTTGAAAGAATGGATGTGTCTTTGCCTTTTACTGTCACATCACATTTCTTTGTTTCTGTTTCTTAGAACTTGTTAGAGACCTGTAAAGCTATTTTTTCCATCATCTCAAAGTCAGTATTATTATGCTCGATGGAGATCTATTATTTAATTGTTCTTCCTCTCTGATTGAAATACCTCAAGCAAGTGACGGAATAGATAAGTTCAACCAGATAATGTGAAATCCGAAAACTAAGAAATGTTGTTTGTGATCGAGAATTCACTCTGACCATCAGGTAAATGGTTCTTATTTTAATGGAATAGGAAAGCTCCCATCTTTGGTTAAGGACTGTCTACAAAGATTTCTTTCTACAAGTATACCGAGAGTTACTATGTGTATTCTTGATATCAGTGTGTCATTACTTAATGTACACAAAAGGGAATGGTTTGCTGACTGAGTGTGCTAAGCCTTAATCTGGTAACCTGAAGGCCTTAGAAGATCCATTTCAATAGAAAAACAAAGTTAGTGAGGAGCAAAGAGAATAAATTTCAAATGGGAATAAAGGTGCAGATGGCGCTGAGAATCATTTTTATTTGGTTCGCTGCTTGGTTAAAGGCTAAAAATGCTTAATTTAGATTTTCTATTAAGTTTCAAATATCTTCCATAACGGAACATTTCTTCTTTCTACCTTTTTGGAACTCTATATTATTTACTTTCTTGCTTTGTCTCCTTCCTAGTCATCTGTAGCTCGCTGTTACAAATATGTCAACTTTAATTTTCTTGTCTCAGTTCTTTATATTCCTTTCCATTTGAATTGAGTATTTTCTTCTGGGCCAACTTCTGACAGGTCTATAGTGAGGAAGACACTCGGAAAATGCCACTAGAGCTTGCAAGTGCACTCTCAATCGAACGAGAACCCGTTACTGATCCTGAAATTCGTGTACAGGCGCTAGAGGCTATTTATTTGCTC</genome_strand>
        <mrna_strand>GTGAAAAAAATAGCGGTTGATATTGTTCGTGATTATACTGGTTCTGAGGATGGCTTGGAATCTCTTGGCAAGTATTCTAACGTCGTGCTTCCTTCTCTGTCTCGCCTTCTTGGTGAAAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTCTGAACCTGCGGCTCAAGCACTGGTAAATCTGTCACAAAAGCCAGAGTTGGCAGGTAAGATGGTTGAGATGCATATGGTTAGGACATCGATGGAAACCCTGTACAAGCAAGATTGTGAAATCACAAGTCTGCTGATTATGCTCCTTGTTAATCTTACTCAGCTGGATGCTGGTATTGATTCTTTGCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAGATGAGAAGATGCATGGTTTATATGTCATGAAACTTGTGAGATCATTTTGTTCGTCCTCCTGTGAGGGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCCCTTTGAACATGTGGCTTCTGTACTTGTCAACATTTCTAAGAAGGAACATGGGAGAAAGCTTCTGCTTGATCAAAAACGATGCCTACTAAAGCAAATAGTCCGTAATGATTCTAAGAGCTTGTTACGAAAGAGAGGG............................................................................................................................................................................................................................................................................GTCGCAGGAACCATCCGCAACTGCTGCTTCGAAGCTGAGAATCAGCTGCAAAATTTGCTTCTGATTTCTGAATTCTTATGGCCAGCTCTGCTCCTGCCTGTTGCTGGAAATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATAGTGAGGAAGACACTCGGAAAATGCCACTAGAGCTTGCAAGTGCACTCTCAATCGAACGAGAACCCGTTACTGATCCTGAAATTCGTGTACAGGCGCTAGAGGCTA--AATTTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460448" ref_strand="+" ref_description="SGN-E460448 [cPRO-31-G16]">
      <seq>gtcgtgcttccctctctgtcttgccttcttggtgaaaaaaaggtggtttctgaacctgcggctcaagcactggtaaatctgtcacaaaagccagagttggcaggtaagatggttgagatgcatatggttaggacatcgatggagaccttgtacaagcaagattgtgaaatcacaagtctgctgattatgctccttgttaatctcacacagctggatgctggtattgattctttgcttcagtctgcagatgagaagatgcatggcttatatgtcatgaaacttgtgagatcattttgttcgtcctcctgtgagggaaaagttgatccctttgaacatgtggcttctgtacttgtcaacatttctaagaaggaagatgggagaaagcttctgcttgatcaaaaacgatgcctactaaagcaaatagtccggaatgattctaagagcttgttgcgaaagagaggggtcgcaggaaccatccgcaactgctgctttgaagcggagaatcagctgcaaaatttgcttctgatttctgaattcttatggccagctctgctcctgcctgttgctggaaataaggtctatagtgaggaagatactcggaaaatgccactagagcttgcaagtgcactctcaatcgaacgagaaaccgttactgatcctgaaattcgtgtacaggcggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="149514" stop="143939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149214" g_stop="149173" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="149172" i_stop="148218" i_length="955">
            <donor d_prob="0.957" d_score="0.95"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148217" g_stop="148020" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="240" r_length="198" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="148019" i_stop="147178" i_length="842">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="147177" g_stop="147099" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="319" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="147098" i_stop="145774" i_length="1325">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="145773" g_stop="145631" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="462" r_length="143" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="145630" i_stop="145363" i_length="268">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.933" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="145362" g_stop="145249" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="576" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="145248" i_stop="144343" i_length="906">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144342" g_stop="144239" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="680" r_length="104" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E460448" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149214" e_stop="149173"/>
          <exon e_start="148217" e_stop="148020"/>
          <exon e_start="147177" e_stop="147099"/>
          <exon e_start="145773" e_stop="145631"/>
          <exon e_start="145362" e_stop="145249"/>
          <exon e_start="144342" e_stop="144239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTGCTTCCTTCTCTGTCTCGCCTTCTTGGTGAAAAAAAGGTACCAGTATCTTCTAAGATGTGTGATTACACCAATAAAGTTCATGTTATGGATGCTTTTTTGTTAAAACAAATTAACCCTTTTCTTCAGAGTTATAAGTAGCATTTCAACTTTTGGAAATCCCCCCACAACAGAAAATTCATAAATAAATATATTTTTTTTACTGTTACAATGACTGGATGTTTGCAATATTTTCTGTAACATTTAAAGAATCTTACCACGGTCAAAATAGATCAGATATTTGGAAGGAGGGATTAGTTCTTATCTGTGTAAACTTGAACTGGTGTTGTTCATATTGATAGTTGTGTACACTATGCCTAACCATCCATATACTAACATGGTGATAGAGCAATGATTTAGAAACTTCTATTTTCCCCTTTTTTTGAAGGAAAAAAAAAGACTTTTGAAAACACCAAAGTTCACTGTGCAAACACTAACTCACTGCTATAGAAATGATGTTTTAAATATGACTTTTGAAAGATAAGAAACAAGCATTACGTTATAGTACCGAAGTTCACTATGCAAAGTTAAACTCAATTTTTGCAAACACTTTATTACAATTTTTTTTAGAAAGACTATACCAAAAAATTAAACTGTGCACAAAACCTTTTTTTTTAAAAAATCATTCCTAACATAACGTTATGAGCTAGAACAAGACAAAGCTGAATGAGATCTCTTGAAAATATGAACCTTTCTGAATTGATGGATACACATATGGCATCACTTTCTTTCTTGTGAAGCCCTTGTTTTCGTTGCATACTATTTGTCCGAAAATTTGACAAATTTATTGTTGATTAATTCATACCATGACCATGGTTTGTCTTCCTGAGATCTTTTATCAAACTCAATTTATTGACATGTATGTAATATTTTTCGTGTATTGATACTTATACTATGCAGTAGCCTCCAGAAAGCCTTTTTAAATTCTTTTTTTTTTATCAACAATACCATTCAGGTGGTTTCTGAACCTGCGGCTCAAGCACTGGTAAATCTGTCACAAAAGCCAGAGTTGGCAGGTAAGATGGTTGAGATGCATATGGTTAGGACATCGATGGAAACCCTGTACAAGCAAGATTGTGAAATCACAAGTCTGCTGATTATGCTCCTTGTTAATCTTACTCAGCTGGATGCTGGTATTGATTCTTTGCTTCAGGTTAATCTCATCCTTTTTTTTTCGCACCAACGCTTTAAATGCCTCTTTATTTTTTTATTTTTTATGAATTAAGGTCTTTCTTTAAAAAGGTACAAGTAGATGCAAAACTACAAAAGAAATGAAGTGCAAGATTATTAGCCCCTTTGGCCTTTACAATGTGTCAAACTAAAACTAGGGGCCCAACAAAGTGTGTCCGAACAATGTTCTAGTTAACTTAGTCCAACAAAAAAGATTAAGCAAACATCTGGCTTTGAGAGTATTGAGGTTCCACCAAACATCTTCGATCCCTTTCCCTCCACAACACCAAAACATAATTGCAGGGATCATCACCACATCTTCCTGATGGTCTTATCGACTCTCCTTAAGTTCTTCTTTACGGCAAGTTTAACTTTGAAGCTTCTAATATGTGTCATTATTCTTGTTTATATACTGTCATATAAGTTAAGAAATTGTGTTTTGTATCTTTTCTAATTGATCAATAACGGAGGAAAGTTTCCACACTTAATCTTCCCATTTGTAAATAGAATGGGACAACTTCGCAATTATTAGGTTTTGATTCTGCATTTCCCTCTTCTGTGGTCATTGAATGGCTGAAGAAAGAAATTAAAAAATGCCTGTACAGAAATTGAAGAAAATTTTGATGACTGAGACACTAGAGGAACAAGAAGAGTTCTATAGATATCTTAAAACACTTCTTACACTTTCTACCTGCTGTTAGGTTGTGGTCATTTGGTTCTCCACAATTAAAATGGCTAAGTTGAATACCGGTTTCTTTTACACCGTCATTAAAAAAATATTGGTTTCTTATGCTTATTATGCTGATTGCTTTCCGTGATTGGCAGTCTGCAGATGAGAAGATGCATGGTTTATATGTCATGAAACTTGTGAGATCATTTTGTTCGTCCTCCTGTGAGGGAAAAGGTATGTTCAATTATCGTTCTTTTTCCCTTTTATCCAGTTTGATTGTTTTGTGTGTTTAAGTGCTTTGATACTGTAGTTCCTGTCACTGTTATCAAGCACAAAAAAGCTCTAAGGTCCATTGGATCTTTAAGCGCAAATAAAGTGTGATTGAAAAAATGCACAAAGTGAGAAAAAAATACAAATATATATGTTAGTCTAAGACTAATAATTATAAGCATGAATAACAAATATATGAACAAGGAAATTCAACTTTTTTATGATAAAGTGAAATATCAATGTTTAGTGTCGTCTCTTTAGAAGAGGCTCATTGGCAAGGAAAAGTTTGTCCTAGAACCTTGATGACGTCACTGAAGCGCACATTAAGCTAGGTGAAGCGCTCAACACGTTTTGAGCCTCACTTCAGGGCTTAAGCGTGCCTTTGACTTGACAACTGGTCCATAGAACTAAGAGCGAAAATGAAACGACTACAGCTGAACTCAGATACGCCCCTGCTTAGCTTGTACAGAAAGTGAGAACCTGGAGGGTGCTTGTTTCGTGATCATTCATCCAAATTGGTTACTTGAACTAAATTGATTGCCTAGCTAGAGAACTCGACGTAAATTCACCTTAGTCAGCTCAAGATGGATAACAAATCTTAGTCAATCATTTGTTTTCTGAGAATGGTAAAATATCTAAGTCAACAAATCAGTGTTGTAAATTTTCATGGATTTCTTATCTACTTAAAGGATTGACTCAAAAACCTTGAAACCTGGAGCACAAGTTCTATCCGTAATTGGTCCACTGAGCATTAAATTTGTCCAGATGTGTGTCATGTGATTTTCTGTGTTTTATGAGAAAGGTGAATCCTCTATTGAGAAGCAAGAGACTTAGCAAACATTATGGGGAAGAAGAATCTTTTATGATTGAAGTACTTACTTCACTAAATTTTGGGTGCTATAAGACTCGGTTAGAAAATATTCGGCTGTGGATGAGCAATTATGTGTAAAGTCTGTCTGTTTTACGATAATACTAGTTGGATTCTGTCCTGGGTTTCAATCATGATAGAGCTTTTTCTCAGCATTTACTTGCTTAGGGGAAGTTAAAAGTGTAGCAAAATATATTATTTCAAGATTCTAGTACATGAAAAGTATCTTTTGGCATGTGATGTGTTGAAATGTCTGATCCTCTCATCGGAGAACTTACGTTGTTAGTGAAGACGTCCTAACTTGAATATATCTCCAAGATGATGCATGTTTAACTCAAACAAGAAATTATTGCCTTAACTTTCCGTATTATCTATTATCTTTGTCGTTATTACCACATATTTCCTTTTTCCTTGTGATCAGTTGATCCCTTTGAACATGTGGCTTCTGTACTTGTCAACATTTCTAAGAAGGAACATGGGAGAAAGCTTCTGCTTGATCAAAAACGATGCCTACTAAAGCAAATAGTCCGTAATGATTCTAAGAGCTTGTTACGAAAGAGAGGGGTATGTGGTAGGATATTTTCAGTTCAAGATGGCTATTTTCATGAATATATGGACTTCTGCTTTAAAGTTAATTATTTGAATTCAAAATGAAAAAAGGGAAATGTTTCAAATTCTGTCATCAAGCACCAATATATGTATTTAGTGCCTTCTAGAATGAGCAATTTGGCTTGATCCAGCTTTTTTATAGTATTGTTTAAAAGCTTTATTTTACAATCATGTAATAAGCAAAAGTTTAGCAGGAAAACTTGTGCACTGATTTTGGATACAGGTCGCAGGAACCATCCGCAACTGCTGCTTCGAAGCTGAGAATCAGCTGCAAAATTTGCTTCTGATTTCTGAATTCTTATGGCCAGCTCTGCTCCTGCCTGTTGCTGGAAATAAGGTGACTTTCACCTATTTAAGTTAGATGTCAATAATAATTCATTTATTTCTACAGTACACTTCAAATCTATCTGTAATTAGGACTTGAAAGAATGGATGTGTCTTTGCCTTTTACTGTCACATCACATTTCTTTGTTTCTGTTTCTTAGAACTTGTTAGAGACCTGTAAAGCTATTTTTTCCATCATCTCAAAGTCAGTATTATTATGCTCGATGGAGATCTATTATTTAATTGTTCTTCCTCTCTGATTGAAATACCTCAAGCAAGTGACGGAATAGATAAGTTCAACCAGATAATGTGAAATCCGAAAACTAAGAAATGTTGTTTGTGATCGAGAATTCACTCTGACCATCAGGTAAATGGTTCTTATTTTAATGGAATAGGAAAGCTCCCATCTTTGGTTAAGGACTGTCTACAAAGATTTCTTTCTACAAGTATACCGAGAGTTACTATGTGTATTCTTGATATCAGTGTGTCATTACTTAATGTACACAAAAGGGAATGGTTTGCTGACTGAGTGTGCTAAGCCTTAATCTGGTAACCTGAAGGCCTTAGAAGATCCATTTCAATAGAAAAACAAAGTTAGTGAGGAGCAAAGAGAATAAATTTCAAATGGGAATAAAGGTGCAGATGGCGCTGAGAATCATTTTTATTTGGTTCGCTGCTTGGTTAAAGGCTAAAAATGCTTAATTTAGATTTTCTATTAAGTTTCAAATATCTTCCATAACGGAACATTTCTTCTTTCTACCTTTTTGGAACTCTATATTATTTACTTTCTTGCTTTGTCTCCTTCCTAGTCATCTGTAGCTCGCTGTTACAAATATGTCAACTTTAATTTTCTTGTCTCAGTTCTTTATATTCCTTTCCATTTGAATTGAGTATTTTCTTCTGGGCCAACTTCTGACAGGTCTATAGTGAGGAAGACACTCGGAAAATGCCACTAGAGCTTGCAAGTGCACTCTCAATCGAACGAGAACCCGTTACTGATCCTGAAATTCGTGTACAGGCGCT</genome_strand>
        <mrna_strand>GTCGTGCTTCCCTCTCTGTCTTGCCTTCTTGGTGAAAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTCTGAACCTGCGGCTCAAGCACTGGTAAATCTGTCACAAAAGCCAGAGTTGGCAGGTAAGATGGTTGAGATGCATATGGTTAGGACATCGATGGAGACCTTGTACAAGCAAGATTGTGAAATCACAAGTCTGCTGATTATGCTCCTTGTTAATCTCACACAGCTGGATGCTGGTATTGATTCTTTGCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAGATGAGAAGATGCATGGCTTATATGTCATGAAACTTGTGAGATCATTTTGTTCGTCCTCCTGTGAGGGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCCCTTTGAACATGTGGCTTCTGTACTTGTCAACATTTCTAAGAAGGAAGATGGGAGAAAGCTTCTGCTTGATCAAAAACGATGCCTACTAAAGCAAATAGTCCGGAATGATTCTAAGAGCTTGTTGCGAAAGAGAGGG............................................................................................................................................................................................................................................................................GTCGCAGGAACCATCCGCAACTGCTGCTTTGAAGCGGAGAATCAGCTGCAAAATTTGCTTCTGATTTCTGAATTCTTATGGCCAGCTCTGCTCCTGCCTGTTGCTGGAAATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATAGTGAGGAAGATACTCGGAAAATGCCACTAGAGCTTGCAAGTGCACTCTCAATCGAACGAGAAACCGTTACTGATCCTGAAATTCGTGTACAGGCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453673" ref_strand="+" ref_description="SGN-E453673 [cSTS-20-D6]">
      <seq>ttctcctccagtgaaaaaaaagcggttgactattgttcgtgcttacacctggttctgaggactggcttggaatctcttggcaagtactctaacgtcgtgcttccctctctgtcttgccttcttggtgaaaaaaaggtggtttctgaacctgcggctcaagcactggtaaatctgtcacaaaagccagagttggcaggtaagatggttgagatgcatatggttaggacatcgatggagaccttgtacaagcaagattgtgaaatcacaagtctgctgattatgctccttgttaatctcacacagctggatgctggtattgattctttgcttcagtctgcagatgagaagatgcatggcttatatgtcatgaaacttgtgagatcattttgttcgtcctcctgtgagggaaaagttgatccctttgaacatgtggcttctgtacttgtcaacatttctaagaaggaagatgggagaaagcttctgcttgatcaaaaacgatgcctactaaagcaaatagtccggaatgattctaagagcttgttgcgaaagagaggggtcgcaggaaccatccgcaactgctgctttgaagcggagaatcagctgcaaaatttgcttctgatttctgaattcttatggccagctctgctcctgcctgttgctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="149595" stop="144954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149295" g_stop="149173" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="135" r_length="125" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="149172" i_stop="148218" i_length="955">
            <donor d_prob="0.957" d_score="0.94"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148217" g_stop="148020" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="333" r_length="198" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="148019" i_stop="147178" i_length="842">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="147177" g_stop="147099" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="412" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="147098" i_stop="145774" i_length="1325">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="145773" g_stop="145631" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="555" r_length="143" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="145630" i_stop="145363" i_length="268">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.933" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="145362" g_stop="145254" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="664" r_length="109" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E453673" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149295" e_stop="149173"/>
          <exon e_start="148217" e_stop="148020"/>
          <exon e_start="147177" e_stop="147099"/>
          <exon e_start="145773" e_stop="145631"/>
          <exon e_start="145362" e_stop="145254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAAAAATAGCGGTTGA-TATTGTTCGTGATTATA-CTGGTTCTGAGGA-TGGCTTGGAATCTCTTGGCAAGTATTCTAACGTCGTGCTTCCTTCTCTGTCTCGCCTTCTTGGTGAAAAAAAGGTACCAGTATCTTCTAAGATGTGTGATTACACCAATAAAGTTCATGTTATGGATGCTTTTTTGTTAAAACAAATTAACCCTTTTCTTCAGAGTTATAAGTAGCATTTCAACTTTTGGAAATCCCCCCACAACAGAAAATTCATAAATAAATATATTTTTTTTACTGTTACAATGACTGGATGTTTGCAATATTTTCTGTAACATTTAAAGAATCTTACCACGGTCAAAATAGATCAGATATTTGGAAGGAGGGATTAGTTCTTATCTGTGTAAACTTGAACTGGTGTTGTTCATATTGATAGTTGTGTACACTATGCCTAACCATCCATATACTAACATGGTGATAGAGCAATGATTTAGAAACTTCTATTTTCCCCTTTTTTTGAAGGAAAAAAAAAGACTTTTGAAAACACCAAAGTTCACTGTGCAAACACTAACTCACTGCTATAGAAATGATGTTTTAAATATGACTTTTGAAAGATAAGAAACAAGCATTACGTTATAGTACCGAAGTTCACTATGCAAAGTTAAACTCAATTTTTGCAAACACTTTATTACAATTTTTTTTAGAAAGACTATACCAAAAAATTAAACTGTGCACAAAACCTTTTTTTTTAAAAAATCATTCCTAACATAACGTTATGAGCTAGAACAAGACAAAGCTGAATGAGATCTCTTGAAAATATGAACCTTTCTGAATTGATGGATACACATATGGCATCACTTTCTTTCTTGTGAAGCCCTTGTTTTCGTTGCATACTATTTGTCCGAAAATTTGACAAATTTATTGTTGATTAATTCATACCATGACCATGGTTTGTCTTCCTGAGATCTTTTATCAAACTCAATTTATTGACATGTATGTAATATTTTTCGTGTATTGATACTTATACTATGCAGTAGCCTCCAGAAAGCCTTTTTAAATTCTTTTTTTTTTATCAACAATACCATTCAGGTGGTTTCTGAACCTGCGGCTCAAGCACTGGTAAATCTGTCACAAAAGCCAGAGTTGGCAGGTAAGATGGTTGAGATGCATATGGTTAGGACATCGATGGAAACCCTGTACAAGCAAGATTGTGAAATCACAAGTCTGCTGATTATGCTCCTTGTTAATCTTACTCAGCTGGATGCTGGTATTGATTCTTTGCTTCAGGTTAATCTCATCCTTTTTTTTTCGCACCAACGCTTTAAATGCCTCTTTATTTTTTTATTTTTTATGAATTAAGGTCTTTCTTTAAAAAGGTACAAGTAGATGCAAAACTACAAAAGAAATGAAGTGCAAGATTATTAGCCCCTTTGGCCTTTACAATGTGTCAAACTAAAACTAGGGGCCCAACAAAGTGTGTCCGAACAATGTTCTAGTTAACTTAGTCCAACAAAAAAGATTAAGCAAACATCTGGCTTTGAGAGTATTGAGGTTCCACCAAACATCTTCGATCCCTTTCCCTCCACAACACCAAAACATAATTGCAGGGATCATCACCACATCTTCCTGATGGTCTTATCGACTCTCCTTAAGTTCTTCTTTACGGCAAGTTTAACTTTGAAGCTTCTAATATGTGTCATTATTCTTGTTTATATACTGTCATATAAGTTAAGAAATTGTGTTTTGTATCTTTTCTAATTGATCAATAACGGAGGAAAGTTTCCACACTTAATCTTCCCATTTGTAAATAGAATGGGACAACTTCGCAATTATTAGGTTTTGATTCTGCATTTCCCTCTTCTGTGGTCATTGAATGGCTGAAGAAAGAAATTAAAAAATGCCTGTACAGAAATTGAAGAAAATTTTGATGACTGAGACACTAGAGGAACAAGAAGAGTTCTATAGATATCTTAAAACACTTCTTACACTTTCTACCTGCTGTTAGGTTGTGGTCATTTGGTTCTCCACAATTAAAATGGCTAAGTTGAATACCGGTTTCTTTTACACCGTCATTAAAAAAATATTGGTTTCTTATGCTTATTATGCTGATTGCTTTCCGTGATTGGCAGTCTGCAGATGAGAAGATGCATGGTTTATATGTCATGAAACTTGTGAGATCATTTTGTTCGTCCTCCTGTGAGGGAAAAGGTATGTTCAATTATCGTTCTTTTTCCCTTTTATCCAGTTTGATTGTTTTGTGTGTTTAAGTGCTTTGATACTGTAGTTCCTGTCACTGTTATCAAGCACAAAAAAGCTCTAAGGTCCATTGGATCTTTAAGCGCAAATAAAGTGTGATTGAAAAAATGCACAAAGTGAGAAAAAAATACAAATATATATGTTAGTCTAAGACTAATAATTATAAGCATGAATAACAAATATATGAACAAGGAAATTCAACTTTTTTATGATAAAGTGAAATATCAATGTTTAGTGTCGTCTCTTTAGAAGAGGCTCATTGGCAAGGAAAAGTTTGTCCTAGAACCTTGATGACGTCACTGAAGCGCACATTAAGCTAGGTGAAGCGCTCAACACGTTTTGAGCCTCACTTCAGGGCTTAAGCGTGCCTTTGACTTGACAACTGGTCCATAGAACTAAGAGCGAAAATGAAACGACTACAGCTGAACTCAGATACGCCCCTGCTTAGCTTGTACAGAAAGTGAGAACCTGGAGGGTGCTTGTTTCGTGATCATTCATCCAAATTGGTTACTTGAACTAAATTGATTGCCTAGCTAGAGAACTCGACGTAAATTCACCTTAGTCAGCTCAAGATGGATAACAAATCTTAGTCAATCATTTGTTTTCTGAGAATGGTAAAATATCTAAGTCAACAAATCAGTGTTGTAAATTTTCATGGATTTCTTATCTACTTAAAGGATTGACTCAAAAACCTTGAAACCTGGAGCACAAGTTCTATCCGTAATTGGTCCACTGAGCATTAAATTTGTCCAGATGTGTGTCATGTGATTTTCTGTGTTTTATGAGAAAGGTGAATCCTCTATTGAGAAGCAAGAGACTTAGCAAACATTATGGGGAAGAAGAATCTTTTATGATTGAAGTACTTACTTCACTAAATTTTGGGTGCTATAAGACTCGGTTAGAAAATATTCGGCTGTGGATGAGCAATTATGTGTAAAGTCTGTCTGTTTTACGATAATACTAGTTGGATTCTGTCCTGGGTTTCAATCATGATAGAGCTTTTTCTCAGCATTTACTTGCTTAGGGGAAGTTAAAAGTGTAGCAAAATATATTATTTCAAGATTCTAGTACATGAAAAGTATCTTTTGGCATGTGATGTGTTGAAATGTCTGATCCTCTCATCGGAGAACTTACGTTGTTAGTGAAGACGTCCTAACTTGAATATATCTCCAAGATGATGCATGTTTAACTCAAACAAGAAATTATTGCCTTAACTTTCCGTATTATCTATTATCTTTGTCGTTATTACCACATATTTCCTTTTTCCTTGTGATCAGTTGATCCCTTTGAACATGTGGCTTCTGTACTTGTCAACATTTCTAAGAAGGAACATGGGAGAAAGCTTCTGCTTGATCAAAAACGATGCCTACTAAAGCAAATAGTCCGTAATGATTCTAAGAGCTTGTTACGAAAGAGAGGGGTATGTGGTAGGATATTTTCAGTTCAAGATGGCTATTTTCATGAATATATGGACTTCTGCTTTAAAGTTAATTATTTGAATTCAAAATGAAAAAAGGGAAATGTTTCAAATTCTGTCATCAAGCACCAATATATGTATTTAGTGCCTTCTAGAATGAGCAATTTGGCTTGATCCAGCTTTTTTATAGTATTGTTTAAAAGCTTTATTTTACAATCATGTAATAAGCAAAAGTTTAGCAGGAAAACTTGTGCACTGATTTTGGATACAGGTCGCAGGAACCATCCGCAACTGCTGCTTCGAAGCTGAGAATCAGCTGCAAAATTTGCTTCTGATTTCTGAATTCTTATGGCCAGCTCTGCTCCTGCCTGTTGCTGGAA</genome_strand>
        <mrna_strand>GTGAAAAAAA-AGCGGTTGACTATTGTTCGTGCTTACACCTGGTTCTGAGGACTGGCTTGGAATCTCTTGGCAAGTACTCTAACGTCGTGCTTCCCTCTCTGTCTTGCCTTCTTGGTGAAAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTCTGAACCTGCGGCTCAAGCACTGGTAAATCTGTCACAAAAGCCAGAGTTGGCAGGTAAGATGGTTGAGATGCATATGGTTAGGACATCGATGGAGACCTTGTACAAGCAAGATTGTGAAATCACAAGTCTGCTGATTATGCTCCTTGTTAATCTCACACAGCTGGATGCTGGTATTGATTCTTTGCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAGATGAGAAGATGCATGGCTTATATGTCATGAAACTTGTGAGATCATTTTGTTCGTCCTCCTGTGAGGGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCCCTTTGAACATGTGGCTTCTGTACTTGTCAACATTTCTAAGAAGGAAGATGGGAGAAAGCTTCTGCTTGATCAAAAACGATGCCTACTAAAGCAAATAGTCCGGAATGATTCTAAGAGCTTGTTGCGAAAGAGAGGG............................................................................................................................................................................................................................................................................GTCGCAGGAACCATCCGCAACTGCTGCTTTGAAGCGGAGAATCAGCTGCAAAATTTGCTTCTGATTTCTGAATTCTTATGGCCAGCTCTGCTCCTGCCTGTTGCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459332" ref_strand="+" ref_description="SGN-E459332 [cPRO-27-F3]">
      <seq>gtcgtgcttccctctctgtcttgccttcttggtgaaaaaaaggtggtttctgaacctgcggctcaagcactggtaaatctgtcacaaaagccagagttggcaggtaagatggttgagatgcatatggttaggacatcgatggagaccttgtacaagcaagattgtgaaatcacaagtctgctgattatgctccttgttaatctcacacagctggatgctggtattgattctttgcttcagtctgcagatgagaagatgcatggcttatatgtcatgaaacttgtgagatcattttgttcgtcctcctgtgagggaaaagttgatccctttgaacatgtggcttctgtacttgtcaacatttctaagaaggaagatgggagaaagcttctgcttgatcaaaaacgatgcctactaaagcaaatagtccggaatgattctaagagcttgttgcgaaagagaggggtcgcaggaaccatccgcaactgctgctttgaagcggagaatcagctgcaaaatttgcttctgatttctgaattcttatggccagctctgctcctgcctgttgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="149514" stop="144956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149214" g_stop="149173" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="149172" i_stop="148218" i_length="955">
            <donor d_prob="0.957" d_score="0.95"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148217" g_stop="148020" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="240" r_length="198" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="148019" i_stop="147178" i_length="842">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="147177" g_stop="147099" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="319" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="147098" i_stop="145774" i_length="1325">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="145773" g_stop="145631" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="462" r_length="143" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="145630" i_stop="145363" i_length="268">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.933" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="145362" g_stop="145256" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="569" r_length="107" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E459332" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149214" e_stop="149173"/>
          <exon e_start="148217" e_stop="148020"/>
          <exon e_start="147177" e_stop="147099"/>
          <exon e_start="145773" e_stop="145631"/>
          <exon e_start="145362" e_stop="145256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTGCTTCCTTCTCTGTCTCGCCTTCTTGGTGAAAAAAAGGTACCAGTATCTTCTAAGATGTGTGATTACACCAATAAAGTTCATGTTATGGATGCTTTTTTGTTAAAACAAATTAACCCTTTTCTTCAGAGTTATAAGTAGCATTTCAACTTTTGGAAATCCCCCCACAACAGAAAATTCATAAATAAATATATTTTTTTTACTGTTACAATGACTGGATGTTTGCAATATTTTCTGTAACATTTAAAGAATCTTACCACGGTCAAAATAGATCAGATATTTGGAAGGAGGGATTAGTTCTTATCTGTGTAAACTTGAACTGGTGTTGTTCATATTGATAGTTGTGTACACTATGCCTAACCATCCATATACTAACATGGTGATAGAGCAATGATTTAGAAACTTCTATTTTCCCCTTTTTTTGAAGGAAAAAAAAAGACTTTTGAAAACACCAAAGTTCACTGTGCAAACACTAACTCACTGCTATAGAAATGATGTTTTAAATATGACTTTTGAAAGATAAGAAACAAGCATTACGTTATAGTACCGAAGTTCACTATGCAAAGTTAAACTCAATTTTTGCAAACACTTTATTACAATTTTTTTTAGAAAGACTATACCAAAAAATTAAACTGTGCACAAAACCTTTTTTTTTAAAAAATCATTCCTAACATAACGTTATGAGCTAGAACAAGACAAAGCTGAATGAGATCTCTTGAAAATATGAACCTTTCTGAATTGATGGATACACATATGGCATCACTTTCTTTCTTGTGAAGCCCTTGTTTTCGTTGCATACTATTTGTCCGAAAATTTGACAAATTTATTGTTGATTAATTCATACCATGACCATGGTTTGTCTTCCTGAGATCTTTTATCAAACTCAATTTATTGACATGTATGTAATATTTTTCGTGTATTGATACTTATACTATGCAGTAGCCTCCAGAAAGCCTTTTTAAATTCTTTTTTTTTTATCAACAATACCATTCAGGTGGTTTCTGAACCTGCGGCTCAAGCACTGGTAAATCTGTCACAAAAGCCAGAGTTGGCAGGTAAGATGGTTGAGATGCATATGGTTAGGACATCGATGGAAACCCTGTACAAGCAAGATTGTGAAATCACAAGTCTGCTGATTATGCTCCTTGTTAATCTTACTCAGCTGGATGCTGGTATTGATTCTTTGCTTCAGGTTAATCTCATCCTTTTTTTTTCGCACCAACGCTTTAAATGCCTCTTTATTTTTTTATTTTTTATGAATTAAGGTCTTTCTTTAAAAAGGTACAAGTAGATGCAAAACTACAAAAGAAATGAAGTGCAAGATTATTAGCCCCTTTGGCCTTTACAATGTGTCAAACTAAAACTAGGGGCCCAACAAAGTGTGTCCGAACAATGTTCTAGTTAACTTAGTCCAACAAAAAAGATTAAGCAAACATCTGGCTTTGAGAGTATTGAGGTTCCACCAAACATCTTCGATCCCTTTCCCTCCACAACACCAAAACATAATTGCAGGGATCATCACCACATCTTCCTGATGGTCTTATCGACTCTCCTTAAGTTCTTCTTTACGGCAAGTTTAACTTTGAAGCTTCTAATATGTGTCATTATTCTTGTTTATATACTGTCATATAAGTTAAGAAATTGTGTTTTGTATCTTTTCTAATTGATCAATAACGGAGGAAAGTTTCCACACTTAATCTTCCCATTTGTAAATAGAATGGGACAACTTCGCAATTATTAGGTTTTGATTCTGCATTTCCCTCTTCTGTGGTCATTGAATGGCTGAAGAAAGAAATTAAAAAATGCCTGTACAGAAATTGAAGAAAATTTTGATGACTGAGACACTAGAGGAACAAGAAGAGTTCTATAGATATCTTAAAACACTTCTTACACTTTCTACCTGCTGTTAGGTTGTGGTCATTTGGTTCTCCACAATTAAAATGGCTAAGTTGAATACCGGTTTCTTTTACACCGTCATTAAAAAAATATTGGTTTCTTATGCTTATTATGCTGATTGCTTTCCGTGATTGGCAGTCTGCAGATGAGAAGATGCATGGTTTATATGTCATGAAACTTGTGAGATCATTTTGTTCGTCCTCCTGTGAGGGAAAAGGTATGTTCAATTATCGTTCTTTTTCCCTTTTATCCAGTTTGATTGTTTTGTGTGTTTAAGTGCTTTGATACTGTAGTTCCTGTCACTGTTATCAAGCACAAAAAAGCTCTAAGGTCCATTGGATCTTTAAGCGCAAATAAAGTGTGATTGAAAAAATGCACAAAGTGAGAAAAAAATACAAATATATATGTTAGTCTAAGACTAATAATTATAAGCATGAATAACAAATATATGAACAAGGAAATTCAACTTTTTTATGATAAAGTGAAATATCAATGTTTAGTGTCGTCTCTTTAGAAGAGGCTCATTGGCAAGGAAAAGTTTGTCCTAGAACCTTGATGACGTCACTGAAGCGCACATTAAGCTAGGTGAAGCGCTCAACACGTTTTGAGCCTCACTTCAGGGCTTAAGCGTGCCTTTGACTTGACAACTGGTCCATAGAACTAAGAGCGAAAATGAAACGACTACAGCTGAACTCAGATACGCCCCTGCTTAGCTTGTACAGAAAGTGAGAACCTGGAGGGTGCTTGTTTCGTGATCATTCATCCAAATTGGTTACTTGAACTAAATTGATTGCCTAGCTAGAGAACTCGACGTAAATTCACCTTAGTCAGCTCAAGATGGATAACAAATCTTAGTCAATCATTTGTTTTCTGAGAATGGTAAAATATCTAAGTCAACAAATCAGTGTTGTAAATTTTCATGGATTTCTTATCTACTTAAAGGATTGACTCAAAAACCTTGAAACCTGGAGCACAAGTTCTATCCGTAATTGGTCCACTGAGCATTAAATTTGTCCAGATGTGTGTCATGTGATTTTCTGTGTTTTATGAGAAAGGTGAATCCTCTATTGAGAAGCAAGAGACTTAGCAAACATTATGGGGAAGAAGAATCTTTTATGATTGAAGTACTTACTTCACTAAATTTTGGGTGCTATAAGACTCGGTTAGAAAATATTCGGCTGTGGATGAGCAATTATGTGTAAAGTCTGTCTGTTTTACGATAATACTAGTTGGATTCTGTCCTGGGTTTCAATCATGATAGAGCTTTTTCTCAGCATTTACTTGCTTAGGGGAAGTTAAAAGTGTAGCAAAATATATTATTTCAAGATTCTAGTACATGAAAAGTATCTTTTGGCATGTGATGTGTTGAAATGTCTGATCCTCTCATCGGAGAACTTACGTTGTTAGTGAAGACGTCCTAACTTGAATATATCTCCAAGATGATGCATGTTTAACTCAAACAAGAAATTATTGCCTTAACTTTCCGTATTATCTATTATCTTTGTCGTTATTACCACATATTTCCTTTTTCCTTGTGATCAGTTGATCCCTTTGAACATGTGGCTTCTGTACTTGTCAACATTTCTAAGAAGGAACATGGGAGAAAGCTTCTGCTTGATCAAAAACGATGCCTACTAAAGCAAATAGTCCGTAATGATTCTAAGAGCTTGTTACGAAAGAGAGGGGTATGTGGTAGGATATTTTCAGTTCAAGATGGCTATTTTCATGAATATATGGACTTCTGCTTTAAAGTTAATTATTTGAATTCAAAATGAAAAAAGGGAAATGTTTCAAATTCTGTCATCAAGCACCAATATATGTATTTAGTGCCTTCTAGAATGAGCAATTTGGCTTGATCCAGCTTTTTTATAGTATTGTTTAAAAGCTTTATTTTACAATCATGTAATAAGCAAAAGTTTAGCAGGAAAACTTGTGCACTGATTTTGGATACAGGTCGCAGGAACCATCCGCAACTGCTGCTTCGAAGCTGAGAATCAGCTGCAAAATTTGCTTCTGATTTCTGAATTCTTATGGCCAGCTCTGCTCCTGCCTGTTGCTGG</genome_strand>
        <mrna_strand>GTCGTGCTTCCCTCTCTGTCTTGCCTTCTTGGTGAAAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTCTGAACCTGCGGCTCAAGCACTGGTAAATCTGTCACAAAAGCCAGAGTTGGCAGGTAAGATGGTTGAGATGCATATGGTTAGGACATCGATGGAGACCTTGTACAAGCAAGATTGTGAAATCACAAGTCTGCTGATTATGCTCCTTGTTAATCTCACACAGCTGGATGCTGGTATTGATTCTTTGCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAGATGAGAAGATGCATGGCTTATATGTCATGAAACTTGTGAGATCATTTTGTTCGTCCTCCTGTGAGGGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCCCTTTGAACATGTGGCTTCTGTACTTGTCAACATTTCTAAGAAGGAAGATGGGAGAAAGCTTCTGCTTGATCAAAAACGATGCCTACTAAAGCAAATAGTCCGGAATGATTCTAAGAGCTTGTTGCGAAAGAGAGGG............................................................................................................................................................................................................................................................................GTCGCAGGAACCATCCGCAACTGCTGCTTTGAAGCGGAGAATCAGCTGCAAAATTTGCTTCTGATTTCTGAATTCTTATGGCCAGCTCTGCTCCTGCCTGTTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728133" ref_strand="+" ref_description="SGN-E728133 [LA16DC06]">
      <seq>gccattaaatcaaatggcgacggagctagaagaattgattgggtttctatcatccccttctcctccagtgaaaaaaatagcggttgatattgttcgtgattatactggttctgaggatggcttggaatctcttggcaagtattctaacgtcgtgcttccttctctgtctcgccttcttggtgaaaaaaaggtggtttctgaacctgcggctcaagcactggtaaatctgtcacaaaagccagagttggcaggtaagatggttgagatgcatatggttaggacatcgatggaaaccctgtacaagcaagattgtgaaatcacaagtctgctgattatgctccttgttaatcttactcagctggatgctggtattgattctttgcttcagtctgcagatgagaagatgcatggtttatatgtcatgaaacttgtgagatcattttgttcgtcctcctgtgagggaaaagttgatccctttgaacatgtggcttctgtacttgtcaacatttctaagaaggaacatgggagaaagcttctgcttgatcaaaaacgatgcctactaaagcaaatagtccgtaatgattctaagagcttgttacgaaagagaggggtcgcaggaaccatccgcaactgctgcttcgaagctgagaatcagctgcaaaatttgcttctgatttctgaaattctatggccagctctgctcctgcctgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0145P19-pIKiN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0145P19.1" temp_strand="-" temp_description="C05HBa0145P19.1  AC209589.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0145P19 sequenced_by:iitg upload_account_name:india complete sequence">
        <position start="149595" stop="144959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149295" g_stop="149173" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="190" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="149172" i_stop="148218" i_length="955">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148217" g_stop="148020" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="388" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="148019" i_stop="147178" i_length="842">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="147177" g_stop="147099" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="467" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="147098" i_stop="145774" i_length="1325">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="145773" g_stop="145631" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="610" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="145630" i_stop="145363" i_length="268">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="145362" g_stop="145259" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="714" r_length="104" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0145P19.1" gen_strand="-" ref_id="SGN-E728133" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0145P19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149295" e_stop="149173"/>
          <exon e_start="148217" e_stop="148020"/>
          <exon e_start="147177" e_stop="147099"/>
          <exon e_start="145773" e_stop="145631"/>
          <exon e_start="145362" e_stop="145259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAAAAATAGCGGTTGATATTGTTCGTGATTATACTGGTTCTGAGGATGGCTTGGAATCTCTTGGCAAGTATTCTAACGTCGTGCTTCCTTCTCTGTCTCGCCTTCTTGGTGAAAAAAAGGTACCAGTATCTTCTAAGATGTGTGATTACACCAATAAAGTTCATGTTATGGATGCTTTTTTGTTAAAACAAATTAACCCTTTTCTTCAGAGTTATAAGTAGCATTTCAACTTTTGGAAATCCCCCCACAACAGAAAATTCATAAATAAATATATTTTTTTTACTGTTACAATGACTGGATGTTTGCAATATTTTCTGTAACATTTAAAGAATCTTACCACGGTCAAAATAGATCAGATATTTGGAAGGAGGGATTAGTTCTTATCTGTGTAAACTTGAACTGGTGTTGTTCATATTGATAGTTGTGTACACTATGCCTAACCATCCATATACTAACATGGTGATAGAGCAATGATTTAGAAACTTCTATTTTCCCCTTTTTTTGAAGGAAAAAAAAAGACTTTTGAAAACACCAAAGTTCACTGTGCAAACACTAACTCACTGCTATAGAAATGATGTTTTAAATATGACTTTTGAAAGATAAGAAACAAGCATTACGTTATAGTACCGAAGTTCACTATGCAAAGTTAAACTCAATTTTTGCAAACACTTTATTACAATTTTTTTTAGAAAGACTATACCAAAAAATTAAACTGTGCACAAAACCTTTTTTTTTAAAAAATCATTCCTAACATAACGTTATGAGCTAGAACAAGACAAAGCTGAATGAGATCTCTTGAAAATATGAACCTTTCTGAATTGATGGATACACATATGGCATCACTTTCTTTCTTGTGAAGCCCTTGTTTTCGTTGCATACTATTTGTCCGAAAATTTGACAAATTTATTGTTGATTAATTCATACCATGACCATGGTTTGTCTTCCTGAGATCTTTTATCAAACTCAATTTATTGACATGTATGTAATATTTTTCGTGTATTGATACTTATACTATGCAGTAGCCTCCAGAAAGCCTTTTTAAATTCTTTTTTTTTTATCAACAATACCATTCAGGTGGTTTCTGAACCTGCGGCTCAAGCACTGGTAAATCTGTCACAAAAGCCAGAGTTGGCAGGTAAGATGGTTGAGATGCATATGGTTAGGACATCGATGGAAACCCTGTACAAGCAAGATTGTGAAATCACAAGTCTGCTGATTATGCTCCTTGTTAATCTTACTCAGCTGGATGCTGGTATTGATTCTTTGCTTCAGGTTAATCTCATCCTTTTTTTTTCGCACCAACGCTTTAAATGCCTCTTTATTTTTTTATTTTTTATGAATTAAGGTCTTTCTTTAAAAAGGTACAAGTAGATGCAAAACTACAAAAGAAATGAAGTGCAAGATTATTAGCCCCTTTGGCCTTTACAATGTGTCAAACTAAAACTAGGGGCCCAACAAAGTGTGTCCGAACAATGTTCTAGTTAACTTAGTCCAACAAAAAAGATTAAGCAAACATCTGGCTTTGAGAGTATTGAGGTTCCACCAAACATCTTCGATCCCTTTCCCTCCACAACACCAAAACATAATTGCAGGGATCATCACCACATCTTCCTGATGGTCTTATCGACTCTCCTTAAGTTCTTCTTTACGGCAAGTTTAACTTTGAAGCTTCTAATATGTGTCATTATTCTTGTTTATATACTGTCATATAAGTTAAGAAATTGTGTTTTGTATCTTTTCTAATTGATCAATAACGGAGGAAAGTTTCCACACTTAATCTTCCCATTTGTAAATAGAATGGGACAACTTCGCAATTATTAGGTTTTGATTCTGCATTTCCCTCTTCTGTGGTCATTGAATGGCTGAAGAAAGAAATTAAAAAATGCCTGTACAGAAATTGAAGAAAATTTTGATGACTGAGACACTAGAGGAACAAGAAGAGTTCTATAGATATCTTAAAACACTTCTTACACTTTCTACCTGCTGTTAGGTTGTGGTCATTTGGTTCTCCACAATTAAAATGGCTAAGTTGAATACCGGTTTCTTTTACACCGTCATTAAAAAAATATTGGTTTCTTATGCTTATTATGCTGATTGCTTTCCGTGATTGGCAGTCTGCAGATGAGAAGATGCATGGTTTATATGTCATGAAACTTGTGAGATCATTTTGTTCGTCCTCCTGTGAGGGAAAAGGTATGTTCAATTATCGTTCTTTTTCCCTTTTATCCAGTTTGATTGTTTTGTGTGTTTAAGTGCTTTGATACTGTAGTTCCTGTCACTGTTATCAAGCACAAAAAAGCTCTAAGGTCCATTGGATCTTTAAGCGCAAATAAAGTGTGATTGAAAAAATGCACAAAGTGAGAAAAAAATACAAATATATATGTTAGTCTAAGACTAATAATTATAAGCATGAATAACAAATATATGAACAAGGAAATTCAACTTTTTTATGATAAAGTGAAATATCAATGTTTAGTGTCGTCTCTTTAGAAGAGGCTCATTGGCAAGGAAAAGTTTGTCCTAGAACCTTGATGACGTCACTGAAGCGCACATTAAGCTAGGTGAAGCGCTCAACACGTTTTGAGCCTCACTTCAGGGCTTAAGCGTGCCTTTGACTTGACAACTGGTCCATAGAACTAAGAGCGAAAATGAAACGACTACAGCTGAACTCAGATACGCCCCTGCTTAGCTTGTACAGAAAGTGAGAACCTGGAGGGTGCTTGTTTCGTGATCATTCATCCAAATTGGTTACTTGAACTAAATTGATTGCCTAGCTAGAGAACTCGACGTAAATTCACCTTAGTCAGCTCAAGATGGATAACAAATCTTAGTCAATCATTTGTTTTCTGAGAATGGTAAAATATCTAAGTCAACAAATCAGTGTTGTAAATTTTCATGGATTTCTTATCTACTTAAAGGATTGACTCAAAAACCTTGAAACCTGGAGCACAAGTTCTATCCGTAATTGGTCCACTGAGCATTAAATTTGTCCAGATGTGTGTCATGTGATTTTCTGTGTTTTATGAGAAAGGTGAATCCTCTATTGAGAAGCAAGAGACTTAGCAAACATTATGGGGAAGAAGAATCTTTTATGATTGAAGTACTTACTTCACTAAATTTTGGGTGCTATAAGACTCGGTTAGAAAATATTCGGCTGTGGATGAGCAATTATGTGTAAAGTCTGTCTGTTTTACGATAATACTAGTTGGATTCTGTCCTGGGTTTCAATCATGATAGAGCTTTTTCTCAGCATTTACTTGCTTAGGGGAAGTTAAAAGTGTAGCAAAATATATTATTTCAAGATTCTAGTACATGAAAAGTATCTTTTGGCATGTGATGTGTTGAAATGTCTGATCCTCTCATCGGAGAACTTACGTTGTTAGTGAAGACGTCCTAACTTGAATATATCTCCAAGATGATGCATGTTTAACTCAAACAAGAAATTATTGCCTTAACTTTCCGTATTATCTATTATCTTTGTCGTTATTACCACATATTTCCTTTTTCCTTGTGATCAGTTGATCCCTTTGAACATGTGGCTTCTGTACTTGTCAACATTTCTAAGAAGGAACATGGGAGAAAGCTTCTGCTTGATCAAAAACGATGCCTACTAAAGCAAATAGTCCGTAATGATTCTAAGAGCTTGTTACGAAAGAGAGGGGTATGTGGTAGGATATTTTCAGTTCAAGATGGCTATTTTCATGAATATATGGACTTCTGCTTTAAAGTTAATTATTTGAATTCAAAATGAAAAAAGGGAAATGTTTCAAATTCTGTCATCAAGCACCAATATATGTATTTAGTGCCTTCTAGAATGAGCAATTTGGCTTGATCCAGCTTTTTTATAGTATTGTTTAAAAGCTTTATTTTACAATCATGTAATAAGCAAAAGTTTAGCAGGAAAACTTGTGCACTGATTTTGGATACAGGTCGCAGGAACCATCCGCAACTGCTGCTTCGAAGCTGAGAATCAGCTGCAAAATTTGCTTCTGATTTCTGAATTCTTATGGCCAGCTCTGCTCCTGCCTGTTGC</genome_strand>
        <mrna_strand>GTGAAAAAAATAGCGGTTGATATTGTTCGTGATTATACTGGTTCTGAGGATGGCTTGGAATCTCTTGGCAAGTATTCTAACGTCGTGCTTCCTTCTCTGTCTCGCCTTCTTGGTGAAAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTCTGAACCTGCGGCTCAAGCACTGGTAAATCTGTCACAAAAGCCAGAGTTGGCAGGTAAGATGGTTGAGATGCATATGGTTAGGACATCGATGGAAACCCTGTACAAGCAAGATTGTGAAATCACAAGTCTGCTGATTATGCTCCTTGTTAATCTTACTCAGCTGGATGCTGGTATTGATTCTTTGCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAGATGAGAAGATGCATGGTTTATATGTCATGAAACTTGTGAGATCATTTTGTTCGTCCTCCTGTGAGGGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCCCTTTGAACATGTGGCTTCTGTACTTGTCAACATTTCTAAGAAGGAACATGGGAGAAAGCTTCTGCTTGATCAAAAACGATGCCTACTAAAGCAAATAGTCCGTAATGATTCTAAGAGCTTGTTACGAAAGAGAGGG............................................................................................................................................................................................................................................................................GTCGCAGGAACCATCCGCAACTGCTGCTTCGAAGCTGAGAATCAGCTGCAAAATTTGCTTCTGATTTCTGAAATTCTATGGCCAGCTCTGCTCCTGCCTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>188</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="12" PGL_stop="1259"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12" e_stop="178"/>
            <exon e_start="537" e_stop="1259"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.920" e_score="0.910"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="12" e_stop="178" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.920">
            <gDNA_intron_boundary i_start="179" i_stop="536" i_length="358"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="537" e_stop="1259" e_length="723"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12" stop="178"/>
              <exon start="537" stop="1090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12" stop="178"/>
              <exon start="537" stop="1046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51" stop="178"/>
              <exon start="537" stop="1259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688004" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGATCTTATGGCGGCTGGGAAAAGTTTTTGTGAAGAGGACTGGTCAAGTTTGAAAAGCAAATACCCCTCCCTTCAAGAGGAGGACTTGCATCGTTATTGCTTCTCTTCAGCGTATATATTGGCATTACTTCATGATAGTCTTGGAATTGCTTTGGATGATGATAG : GATTGGATATGCTAATCAAGTTGAAAACATTCCACTTGATTGGGCATTGGGAGCATTCATCTTGCAGAGCACAGCTGAGTTGGACAAAGAGCATTCTGGGTGGTTTGCAAATATGTTCAGTGAGGACTCTCTCATTTTGCTTCTCTTCTTTGCCTTTTTCATTTTGGTGATGTTCACCGCATGGTATGTGTCAAAGTGGAGAAAGCCACAATTGAAGACTGTGTATGATCTAGAGAAAGGAAAGTACATAGTCACACGTGTTGGTAGATGTTCATAGATTGTTTTATAGGAGTAGAAGCCATTTTCCTGCATCTGTGGATAAGGCGGAAGGACCAAAGTAGATCATCAACTACCTCATCCAAGAATCTCTGCACACTTTGTTGCTTGGTACCCCGAGCTAAAGATGCTATACTTAGGCGAAGTCAGATCAATCTTATGGGACTGTAGCTACCCAACTCAAGAAGGTGTCTCGGTCTCTATTTATTGTTATGAAGCAGAAAATCTTCCTGTAAGAATGTTATAGTCGGTATGAGGAAGCAGATATACTAGAAACTTAGAAGAGCTCGTCTTGTTTGGTTGCTCACCAAGTATACCATTTACACTATAGTCATTACTCATTAACATATTTCCTTCACAAAGTAGTTGCCTGTATCCATCCCCTGGAGGGGGGTTGGTGTAGAACTGAAGATTTCTCATGGGTGGTAAATAATTTGAATTTATTCT</gDNA_template>
            <first_frame> S  D  L  M  A  A  G  K  S  F  C  E  E  D  W  S  S  L  K  S  K  Y  P  S  L  Q  E  E  D  L  H  R  Y  C  F  S  S  A  Y  I  L  A  L  L  H  D  S  L  G  I  A  L  D  D  D  R :   I  G  Y  A  N  Q  V  E  N  I  P  L  D  W  A  L  G  A  F  I  L  Q  S  T  A  E  L  D  K  E  H  S  G  W  F  A  N  M  F  S  E  D  S  L  I  L  L  L  F  F  A  F  F  I  L  V  M  F  T  A  W  Y  V  S  K  W  R  K  P  Q  L  K  T  V  Y  D  L  E  K  G  K  Y  I  V  T  R  V  G  R  C  S  *  I  V  L  *  E  *  K  P  F  S  C  I  C  G  *  G  G  R  T  K  V  D  H  Q  L  P  H  P  R  I  S  A  H  F  V  A  W  Y  P  E  L  K  M  L  Y  L  G  E  V  R  S  I  L  W  D  C  S  Y  P  T  Q  E  G  V  S  V  S  I  Y  C  Y  E  A  E  N  L  P  V  R  M  L  *  S  V  *  G  S  R  Y  T  R  N  L  E  E  L  V  L  F  G  C  S  P  S  I  P  F  T  L  *  S  L  L  I  N  I  F  P  S  Q  S  S  C  L  Y  P  S  P  G  G  G  L  V  *  N  *  R  F  L  M  G  G  K  *  F  E  F  I   </first_frame>
            <second_frame>  L  I  L  W  R  L  G  K  V  F  V  K  R  T  G  Q  V  *  K  A  N  T  P  P  F  K  R  R  T  C  I  V  I  A  S  L  Q  R  I  Y  W  H  Y  F  M  I  V  L  E  L  L  W  M  M  I   : G  L  D  M  L  I  K  L  K  T  F  H  L  I  G  H  W  E  H  S  S  C  R  A  Q  L  S  W  T  K  S  I  L  G  G  L  Q  I  C  S  V  R  T  L  S  F  C  F  S  S  L  P  F  S  F  W  *  C  S  P  H  G  M  C  Q  S  G  E  S  H  N  *  R  L  C  M  I  *  R  K  E  S  T  *  S  H  V  L  V  D  V  H  R  L  F  Y  R  S  R  S  H  F  P  A  S  V  D  K  A  E  G  P  K  *  I  I  N  Y  L  I  Q  E  S  L  H  T  L  L  L  G  T  P  S  *  R  C  Y  T  *  A  K  S  D  Q  S  Y  G  T  V  A  T  Q  L  K  K  V  S  R  S  L  F  I  V  M  K  Q  K  I  F  L  *  E  C  Y  S  R  Y  E  E  A  D  I  L  E  T  *  K  S  S  S  C  L  V  A  H  Q  V  Y  H  L  H  Y  S  H  Y  S  L  T  Y  F  L  H  K  V  V  A  C  I  H  P  L  E  G  G  W  C  R  T  E  D  F  S  W  V  V  N  N  L  N  L  F  </second_frame>
            <third_frame>   *  S  Y  G  G  W  E  K  F  L  *  R  G  L  V  K  F  E  K  Q  I  P  L  P  S  R  G  G  L  A  S  L  L  L  L  F  S  V  Y  I  G  I  T  S  *  *  S  W  N  C  F  G  *  *  *  :  D  W  I  C  *  S  S  *  K  H  S  T  *  L  G  I  G  S  I  H  L  A  E  H  S  *  V  G  Q  R  A  F  W  V  V  C  K  Y  V  Q  *  G  L  S  H  F  A  S  L  L  C  L  F  H  F  G  D  V  H  R  M  V  C  V  K  V  E  K  A  T  I  E  D  C  V  *  S  R  E  R  K  V  H  S  H  T  C  W  *  M  F  I  D  C  F  I  G  V  E  A  I  F  L  H  L  W  I  R  R  K  D  Q  S  R  S  S  T  T  S  S  K  N  L  C  T  L  C  C  L  V  P  R  A  K  D  A  I  L  R  R  S  Q  I  N  L  M  G  L  *  L  P  N  S  R  R  C  L  G  L  Y  L  L  L  *  S  R  K  S  S  C  K  N  V  I  V  G  M  R  K  Q  I  Y  *  K  L  R  R  A  R  L  V  W  L  L  T  K  Y  T  I  Y  T  I  V  I  T  H  *  H  I  S  F  T  K  *  L  P  V  S  I  P  W  R  G  V  G  V  E  L  K  I  S  H  G  W  *  I  I  *  I  Y  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12" stop="178"/>
                    <exon start="537" stop="813"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDLMAAGKSFCEEDWSSLKSKYPSLQEEDLHRYCFSSAYILALLHDSLGIALDDDRIGYANQVENIPLDWALGAFILQSTAELDKEHSGWFANMFSEDSLILLLFFAFFILVMFTAWYVSKWRKPQLKTVYDLEKGKYIVTRVGRCS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="859" stop="1059"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGRTKVDHQLPHPRISAHFVAWYPELKMLYLGEVRSILWDCSYPTQEGVSVSIYCYEAENLPVRML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="1247" PGL_stop="572"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1247" e_stop="572"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="1247" e_stop="572" e_length="676"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1247" stop="572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605202" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTATTTACCACCCATGAGAAATCTTCAGTTCTACACCAACCCCCCTCCAGGGGATGGATACAGGCAACTACTTTGTGAAGGAAATATGTTAATGAGTAATGACTATAGTGTAAATGGTATACTTGGTGAGCAACCAAACAAGACGAGCTCTTCTAAGTTTCTAGTATATCTGCTTCCTCATACCGACTATAACATTCTTACAGGAAGATTTTCTGCTTCATAACAATAAATAGAGACCGAGACACCTTCTTGAGTTGGGTAGCTACAGTCCCATAAGATTGATCTGACTTCGCCTAAGTATAGCATCTTTAGCTCGGGGTACCAAGCAACAAAGTGTGCAGAGATTCTTGGATGAGGTAGTTGATGATCTACTTTGGTCCTTCCGCCTTATCCACAGATGCAGGAAAATGGCTTCTACTCCTATAAAACAATCTATGAACATCTACCAACACGTGTGACTATGTACTTTCCTTTCTCTAGATCATACACAGTCTTCAATTGTGGCTTTCTCCACTTTGACACATACCATGCGGTGAACATCACCAAAATGAAAAAGGCAAAGAAGAGAAGCAAAATGAGAGAGTCCTCACTGAACATATTTGCAAACCACCCAGAATGCTCTTTGTCCAACTCAGCTGTGCTCTGCAAGATGAATGCTCCCAATGCCCAATCAA</gDNA_template>
            <first_frame> N  Y  L  P  P  M  R  N  L  Q  F  Y  T  N  P  P  P  G  D  G  Y  R  Q  L  L  C  E  G  N  M  L  M  S  N  D  Y  S  V  N  G  I  L  G  E  Q  P  N  K  T  S  S  S  K  F  L  V  Y  L  L  P  H  T  D  Y  N  I  L  T  G  R  F  S  A  S  *  Q  *  I  E  T  E  T  P  S  *  V  G  *  L  Q  S  H  K  I  D  L  T  S  P  K  Y  S  I  F  S  S  G  Y  Q  A  T  K  C  A  E  I  L  G  *  G  S  *  *  S  T  L  V  L  P  P  Y  P  Q  M  Q  E  N  G  F  Y  S  Y  K  T  I  Y  E  H  L  P  T  R  V  T  M  Y  F  P  F  S  R  S  Y  T  V  F  N  C  G  F  L  H  F  D  T  Y  H  A  V  N  I  T  K  M  K  K  A  K  K  R  S  K  M  R  E  S  S  L  N  I  F  A  N  H  P  E  C  S  L  S  N  S  A  V  L  C  K  M  N  A  P  N  A  Q  S  </first_frame>
            <second_frame>  I  I  Y  H  P  *  E  I  F  S  S  T  P  T  P  L  Q  G  M  D  T  G  N  Y  F  V  K  E  I  C  *  *  V  M  T  I  V  *  M  V  Y  L  V  S  N  Q  T  R  R  A  L  L  S  F  *  Y  I  C  F  L  I  P  T  I  T  F  L  Q  E  D  F  L  L  H  N  N  K  *  R  P  R  H  L  L  E  L  G  S  Y  S  P  I  R  L  I  *  L  R  L  S  I  A  S  L  A  R  G  T  K  Q  Q  S  V  Q  R  F  L  D  E  V  V  D  D  L  L  W  S  F  R  L  I  H  R  C  R  K  M  A  S  T  P  I  K  Q  S  M  N  I  Y  Q  H  V  *  L  C  T  F  L  S  L  D  H  T  Q  S  S  I  V  A  F  S  T  L  T  H  T  M  R  *  T  S  P  K  *  K  R  Q  R  R  E  A  K  *  E  S  P  H  *  T  Y  L  Q  T  T  Q  N  A  L  C  P  T  Q  L  C  S  A  R  *  M  L  P  M  P  N  Q </second_frame>
            <third_frame>   L  F  T  T  H  E  K  S  S  V  L  H  Q  P  P  S  R  G  W  I  Q  A  T  T  L  *  R  K  Y  V  N  E  *  *  L  *  C  K  W  Y  T  W  *  A  T  K  Q  D  E  L  F  *  V  S  S  I  S  A  S  S  Y  R  L  *  H  S  Y  R  K  I  F  C  F  I  T  I  N  R  D  R  D  T  F  L  S  W  V  A  T  V  P  *  D  *  S  D  F  A  *  V  *  H  L  *  L  G  V  P  S  N  K  V  C  R  D  S  W  M  R  *  L  M  I  Y  F  G  P  S  A  L  S  T  D  A  G  K  W  L  L  L  L  *  N  N  L  *  T  S  T  N  T  C  D  Y  V  L  S  F  L  *  I  I  H  S  L  Q  L  W  L  S  P  L  *  H  I  P  C  G  E  H  H  Q  N  E  K  G  K  E  E  K  Q  N  E  R  V  L  T  E  H  I  C  K  P  P  R  M  L  F  V  Q  L  S  C  A  L  Q  D  E  C  S  Q  C  P  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="878" stop="573"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STLVLPPYPQMQENGFYSYKTIYEHLPTRVTMYFPFSRSYTVFNCGFLHFDTYHAVNITKMKKAKKRSKMRESSLNIFANHPECSLSNSAVLCKMNAPNAQS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1247" stop="1023"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYLPPMRNLQFYTNPPPGDGYRQLLCEGNMLMSNDYSVNGILGEQPNKTSSSKFLVYLLPHTDYNILTGRFSAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="2206" PGL_stop="9515"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2206" e_stop="2417"/>
            <exon e_start="2707" e_stop="2998"/>
            <exon e_start="3894" e_stop="3965"/>
            <exon e_start="4589" e_stop="4653"/>
            <exon e_start="5131" e_stop="5287"/>
            <exon e_start="5690" e_stop="5773"/>
            <exon e_start="5860" e_stop="5949"/>
            <exon e_start="6077" e_stop="6392"/>
            <exon e_start="9470" e_stop="9515"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.237" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="0.989"/>
          <exon-intron don_prob="0.000" acc_prob="0.448" e_score="0.997"/>
          <exon-only e_score="0.568"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2206" e_stop="2417" e_length="212"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2418" i_stop="2706" i_length="289"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2707" e_stop="2998" e_length="292"/>
          </exon>
          <intron i_serial="2" don_prob="0.933" acc_prob="0.998">
            <gDNA_intron_boundary i_start="2999" i_stop="3893" i_length="895"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3894" e_stop="3965" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="3966" i_stop="4588" i_length="623"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4589" e_stop="4653" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="4654" i_stop="5130" i_length="477"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5131" e_stop="5287" e_length="157"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="5288" i_stop="5689" i_length="402"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5690" e_stop="5773" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.237">
            <gDNA_intron_boundary i_start="5774" i_stop="5859" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="5860" e_stop="5949" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5950" i_stop="6076" i_length="127"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="6077" e_stop="6392" e_length="316"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.448">
            <gDNA_intron_boundary i_start="6393" i_stop="9469" i_length="3077"/>
          </intron>
          <exon e_serial="9" e_score="0.568">
            <gDNA_exon_boundary e_start="9470" e_stop="9515" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2206" stop="2417"/>
              <exon start="2707" stop="2882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2226" stop="2417"/>
              <exon start="2707" stop="2823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277745" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2264" stop="2417"/>
              <exon start="2707" stop="2998"/>
              <exon start="3894" stop="3965"/>
              <exon start="4589" stop="4653"/>
              <exon start="5131" stop="5287"/>
              <exon start="5690" stop="5771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2264" stop="2417"/>
              <exon start="2707" stop="2998"/>
              <exon start="3894" stop="3965"/>
              <exon start="4589" stop="4653"/>
              <exon start="5131" stop="5287"/>
              <exon start="5690" stop="5763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2273" stop="2417"/>
              <exon start="2707" stop="2847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2278" stop="2417"/>
              <exon start="2707" stop="2998"/>
              <exon start="3894" stop="3965"/>
              <exon start="4589" stop="4653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2928" stop="2998"/>
              <exon start="3894" stop="3965"/>
              <exon start="4589" stop="4653"/>
              <exon start="5131" stop="5287"/>
              <exon start="5690" stop="5773"/>
              <exon start="5860" stop="5949"/>
              <exon start="6077" stop="6234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3894" stop="3965"/>
              <exon start="4589" stop="4653"/>
              <exon start="5131" stop="5287"/>
              <exon start="5690" stop="5773"/>
              <exon start="5860" stop="5913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5142" stop="5287"/>
              <exon start="5690" stop="5773"/>
              <exon start="5860" stop="5949"/>
              <exon start="6077" stop="6392"/>
              <exon start="9470" stop="9513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375247" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5153" stop="5287"/>
              <exon start="5690" stop="5773"/>
              <exon start="5860" stop="5949"/>
              <exon start="6077" stop="6392"/>
              <exon start="9470" stop="9513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375192" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5215" stop="5287"/>
              <exon start="5690" stop="5773"/>
              <exon start="5860" stop="5949"/>
              <exon start="6077" stop="6392"/>
              <exon start="9470" stop="9513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252697" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5702" stop="5773"/>
              <exon start="5860" stop="5949"/>
              <exon start="6077" stop="6392"/>
              <exon start="9470" stop="9515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252365" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTTTTTTTAACAAGGAAGAAAGCTTAGACCAAAAAAGTGTAGAAAACAACAAACAAACCGCAATAGTTTGGTATTTTTTTCGGAAAAATCTAAGATAAATACTATAATTTAGCAAACACCCTTCAATTTGTTCCGCTATAAATCCGCAGAAATTTTTGGGTTTTTTTCTTTCTCTTTCCATTTGCTGAATTTCTTCATTTTCCCAG : GAATTGTGTTACTTTTTTTATCTGGGTTTTTACAATGGGAGATTGTTTGGTGGTGCATACGGATCGTATTGTGAAGGCTAATGGAGCTGAGATTATGGATGGGAAGAATCCTGAAATGGTAGGGTCTTCGTCGGCAATAGCTGTAGATGAGAAGAAGGTGCTGGAGGAGGAGGAGGAGGAGGAGGGTGATGAGGAGGTGCCGTTAATTGGTAGAGCAGAGTGCAGGATTTGCCAGGAGGAGGATTCTTTGGACAAGTTGGAGAGCCCATGTGCTTGCAGTGGAAGTCTCAAG : TACACACACCGAGCATGCGTTCAACACTGGTGCAATGAGAAGGGGGATATTACTTGTGAGATTTGCCATCAG : CAATACCAGCCTGGTTACACTGTTCCTCCTCGACCTGTGGCTGAGGAGACAATTATTGATATTGG : GGGAGGATGGCAAATCTCTGGTACCCCTTTGAATTTACATGATCCTCGCGTCTTGGCAATTGCAGAGGCTGAACGCCAACTTCTGGAAGCTGAATATGATGATTACAATTCTGCAAATGCAAGTGGTGCAGCTTTCTTTCGATCGGCTGCTTTAATT : TTGATGGCTCTTCTACTATTGCGCCATGCATTACCAATGACAGATACAGATGGAGATGATGAAGATCCAACTGCTTTCTTTTCG : CTTTTCTTACTCCGGGCAGTTGGCTTTCTTTTACCCTGCTACATCATGCTCTGGGCCATCAGCATCTTGCAGCAGCGCAGACAAAGAGAG : GAAGCTGCAGCATTGGCAGCAACACAATTTGCAGTTGTGTTACACTCTGGACAGCCGAGAAGTGTACAGTTTACCATAGCTTCAGCTGCACCAGCAACACCAGCAGCGCCTGCTTCAGTGGATAATGTTTAAACAACAAGATGATCGTGCTTGATCTCTTATTTTGAAGCTAAATACTGCCTTATGCTAGATTTGTTTGTCTGTTATCATATTTCATATATTATTATATGGGGAAGTTCGAAAATGAATTGTTGTATTACCATTTTGCCCCCCTTTACTGTTTTAAAAATTTGATTAAATATAAATATTTTTAATT : ACTAAAAAAGAAAAGCATAAAGAAACAGATTTCGCACAAGAAACCA</gDNA_template>
            <first_frame> F  F  F  F  L  T  R  K  K  A  *  T  K  K  V  *  K  T  T  N  K  P  Q  *  F  G  I  F  F  G  K  I  *  D  K  Y  Y  N  L  A  N  T  L  Q  F  V  P  L  *  I  R  R  N  F  W  V  F  F  F  L  F  P  F  A  E  F  L  H  F  P  R :   N  C  V  T  F  F  I  W  V  F  T  M  G  D  C  L  V  V  H  T  D  R  I  V  K  A  N  G  A  E  I  M  D  G  K  N  P  E  M  V  G  S  S  S  A  I  A  V  D  E  K  K  V  L  E  E  E  E  E  E  E  G  D  E  E  V  P  L  I  G  R  A  E  C  R  I  C  Q  E  E  D  S  L  D  K  L  E  S  P  C  A  C  S  G  S  L  K  :  Y  T  H  R  A  C  V  Q  H  W  C  N  E  K  G  D  I  T  C  E  I  C  H  Q  :  Q  Y  Q  P  G  Y  T  V  P  P  R  P  V  A  E  E  T  I  I  D  I  G :   G  G  W  Q  I  S  G  T  P  L  N  L  H  D  P  R  V  L  A  I  A  E  A  E  R  Q  L  L  E  A  E  Y  D  D  Y  N  S  A  N  A  S  G  A  A  F  F  R  S  A  A  L  I  :  L  M  A  L  L  L  L  R  H  A  L  P  M  T  D  T  D  G  D  D  E  D  P  T  A  F  F  S  :  L  F  L  L  R  A  V  G  F  L  L  P  C  Y  I  M  L  W  A  I  S  I  L  Q  Q  R  R  Q  R  E  :  E  A  A  A  L  A  A  T  Q  F  A  V  V  L  H  S  G  Q  P  R  S  V  Q  F  T  I  A  S  A  A  P  A  T  P  A  A  P  A  S  V  D  N  V  *  T  T  R  *  S  C  L  I  S  Y  F  E  A  K  Y  C  L  M  L  D  L  F  V  C  Y  H  I  S  Y  I  I  I  W  G  S  S  K  M  N  C  C  I  T  I  L  P  P  F  T  V  L  K  I  *  L  N  I  N  I  F  N   : Y  *  K  R  K  A  *  R  N  R  F  R  T  R  N   </first_frame>
            <second_frame>  F  F  F  F  *  Q  G  R  K  L  R  P  K  K  C  R  K  Q  Q  T  N  R  N  S  L  V  F  F  S  E  K  S  K  I  N  T  I  I  *  Q  T  P  F  N  L  F  R  Y  K  S  A  E  I  F  G  F  F  S  F  S  F  H  L  L  N  F  F  I  F  P   : G  I  V  L  L  F  L  S  G  F  L  Q  W  E  I  V  W  W  C  I  R  I  V  L  *  R  L  M  E  L  R  L  W  M  G  R  I  L  K  W  *  G  L  R  R  Q  *  L  *  M  R  R  R  C  W  R  R  R  R  R  R  R  V  M  R  R  C  R  *  L  V  E  Q  S  A  G  F  A  R  R  R  I  L  W  T  S  W  R  A  H  V  L  A  V  E  V  S  S :   T  H  T  E  H  A  F  N  T  G  A  M  R  R  G  I  L  L  V  R  F  A  I  S :   N  T  S  L  V  T  L  F  L  L  D  L  W  L  R  R  Q  L  L  I  L   : G  E  D  G  K  S  L  V  P  L  *  I  Y  M  I  L  A  S  W  Q  L  Q  R  L  N  A  N  F  W  K  L  N  M  M  I  T  I  L  Q  M  Q  V  V  Q  L  S  F  D  R  L  L  *  F :   *  W  L  F  Y  Y  C  A  M  H  Y  Q  *  Q  I  Q  M  E  M  M  K  I  Q  L  L  S  F  R :   F  S  Y  S  G  Q  L  A  F  F  Y  P  A  T  S  C  S  G  P  S  A  S  C  S  S  A  D  K  E  R :   K  L  Q  H  W  Q  Q  H  N  L  Q  L  C  Y  T  L  D  S  R  E  V  Y  S  L  P  *  L  Q  L  H  Q  Q  H  Q  Q  R  L  L  Q  W  I  M  F  K  Q  Q  D  D  R  A  *  S  L  I  L  K  L  N  T  A  L  C  *  I  C  L  S  V  I  I  F  H  I  L  L  Y  G  E  V  R  K  *  I  V  V  L  P  F  C  P  P  L  L  F  *  K  F  D  *  I  *  I  F  L  I  :  T  K  K  E  K  H  K  E  T  D  F  A  Q  E  T  </second_frame>
            <third_frame>   F  F  F  F  N  K  E  E  S  L  D  Q  K  S  V  E  N  N  K  Q  T  A  I  V  W  Y  F  F  R  K  N  L  R  *  I  L  *  F  S  K  H  P  S  I  C  S  A  I  N  P  Q  K  F  L  G  F  F  L  S  L  S  I  C  *  I  S  S  F  S  Q  :  E  L  C  Y  F  F  Y  L  G  F  Y  N  G  R  L  F  G  G  A  Y  G  S  Y  C  E  G  *  W  S  *  D  Y  G  W  E  E  S  *  N  G  R  V  F  V  G  N  S  C  R  *  E  E  G  A  G  G  G  G  G  G  G  G  *  *  G  G  A  V  N  W  *  S  R  V  Q  D  L  P  G  G  G  F  F  G  Q  V  G  E  P  M  C  L  Q  W  K  S  Q   : V  H  T  P  S  M  R  S  T  L  V  Q  *  E  G  G  Y  Y  L  *  D  L  P  S   : A  I  P  A  W  L  H  C  S  S  S  T  C  G  *  G  D  N  Y  *  Y  W  :  G  R  M  A  N  L  W  Y  P  F  E  F  T  *  S  S  R  L  G  N  C  R  G  *  T  P  T  S  G  S  *  I  *  *  L  Q  F  C  K  C  K  W  C  S  F  L  S  I  G  C  F  N   : F  D  G  S  S  T  I  A  P  C  I  T  N  D  R  Y  R  W  R  *  *  R  S  N  C  F  L  F   : A  F  L  T  P  G  S  W  L  S  F  T  L  L  H  H  A  L  G  H  Q  H  L  A  A  A  Q  T  K  R   : G  S  C  S  I  G  S  N  T  I  C  S  C  V  T  L  W  T  A  E  K  C  T  V  Y  H  S  F  S  C  T  S  N  T  S  S  A  C  F  S  G  *  C  L  N  N  K  M  I  V  L  D  L  L  F  *  S  *  I  L  P  Y  A  R  F  V  C  L  L  S  Y  F  I  Y  Y  Y  M  G  K  F  E  N  E  L  L  Y  Y  H  F  A  P  L  Y  C  F  K  N  L  I  K  Y  K  Y  F  *  L :   L  K  K  K  S  I  K  K  Q  I  S  H  K  K  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2353" stop="2417"/>
                    <exon start="2707" stop="2998"/>
                    <exon start="3894" stop="3965"/>
                    <exon start="4589" stop="4653"/>
                    <exon start="5131" stop="5287"/>
                    <exon start="5690" stop="5773"/>
                    <exon start="5860" stop="5949"/>
                    <exon start="6077" stop="6208"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>954</number_coding_nucleotides>
                  <number_encoded_amino_acids>318</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRRNFWVFFFLFPFAEFLHFPRNCVTFFIWVFTMGDCLVVHTDRIVKANGAEIMDGKNPEMVGSSSAIAVDEKKVLEEEEEEEGDEEVPLIGRAECRICQEEDSLDKLESPCACSGSLKYTHRACVQHWCNEKGDITCEICHQQYQPGYTVPPRPVAEETIIDIGGGWQISGTPLNLHDPRVLAIAEAERQLLEAEYDDYNSANASGAAFFRSAALILMALLLLRHALPMTDTDGDDEDPTAFFSLFLLRAVGFLLPCYIMLWAISILQQRRQREEAAALAATQFAVVLHSGQPRSVQFTIASAAPATPAAPASVDNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="14145" PGL_stop="12490"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14145" e_stop="13683"/>
            <exon e_start="13535" e_stop="13208"/>
            <exon e_start="13021" e_stop="13008"/>
            <exon e_start="12505" e_stop="12490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.204" e_score="0.902"/>
          <exon-intron don_prob="0.216" acc_prob="0.870" e_score="0.571"/>
          <exon-only e_score="0.688"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14145" e_stop="13683" e_length="463"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="13682" i_stop="13536" i_length="147"/>
          </intron>
          <exon e_serial="2" e_score="0.902">
            <gDNA_exon_boundary e_start="13535" e_stop="13208" e_length="328"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.204">
            <gDNA_intron_boundary i_start="13207" i_stop="13022" i_length="186"/>
          </intron>
          <exon e_serial="3" e_score="0.571">
            <gDNA_exon_boundary e_start="13021" e_stop="13008" e_length="14"/>
          </exon>
          <intron i_serial="3" don_prob="0.216" acc_prob="0.870">
            <gDNA_intron_boundary i_start="13007" i_stop="12506" i_length="502"/>
          </intron>
          <exon e_serial="4" e_score="0.688">
            <gDNA_exon_boundary e_start="12505" e_stop="12490" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14145" stop="13683"/>
              <exon start="13535" stop="13422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13701" stop="13683"/>
              <exon start="13535" stop="13208"/>
              <exon start="13021" stop="13008"/>
              <exon start="12505" stop="12490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436571" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACATGTAGAATCCCTACCATATCTTGTATTCATCTCCGCGTTGAGTCTCGAGAAATTGAAAGTATCCTACTTTATACTGGGCTCTCAACACTTATCAAACATTTCTCAGCTTCGGAAACTTCAAGAACTCGAACTGAATTTTGTTGAATTTGAGGGTGAAAAATGGGAAGTGAGGGAAGACGAGTTCGTTGAACTCAAAGTTTTGAAAATAGTGAACTGCTCCAGTTTTAGAGAATGGACTGTCTCCGATGATGCATTTTCTAACCTTCAACACATGTTTCTGCGTTGTTGTCAGTCACTTGTGGAGATCCCTTCTTGGTTCGCAGAAATTCATTCTCTAAAGTACATTGAGGTGGATAATTGCAATGGATCTGTTGTTGAATCAGCCAGGACTATCCAAAACACAAAAGTTGAAGATTATGATGTTGATTTGGAGCTCGTCATCAAGACTCATAATTCAG : ATGGTGTTACTGGAAGGTAACTGTAAGCTGCGTGGACATAAGGTTCTATCTAGTATATATGTTGGACACAACAATTATCTTAATTGGTTTACCAGACACGTCGATCAGTCTCCATCAGGTGGCTCCATGGCTCGGAGCGTGTGAACTGTACATGCTAAGCATTGAGAGAGTATGGGTATTTTCTGTTCATTCGTATAGGTGTGCTTTTCTGATTTTTCTGTAAGTTATTACATTTTAAACTCTTTTTAGGTGAATGATTTCACTCATTCCCCTTGTGTTCTTTTATGAACTAACTAAATTCTGTTATGTTATTGAGCTGAGTTTTTGT : TCCGCGAACTCAAA : CACAAAAGAAGCTTGA</gDNA_template>
            <first_frame> E  H  V  E  S  L  P  Y  L  V  F  I  S  A  L  S  L  E  K  L  K  V  S  Y  F  I  L  G  S  Q  H  L  S  N  I  S  Q  L  R  K  L  Q  E  L  E  L  N  F  V  E  F  E  G  E  K  W  E  V  R  E  D  E  F  V  E  L  K  V  L  K  I  V  N  C  S  S  F  R  E  W  T  V  S  D  D  A  F  S  N  L  Q  H  M  F  L  R  C  C  Q  S  L  V  E  I  P  S  W  F  A  E  I  H  S  L  K  Y  I  E  V  D  N  C  N  G  S  V  V  E  S  A  R  T  I  Q  N  T  K  V  E  D  Y  D  V  D  L  E  L  V  I  K  T  H  N  S   : D  G  V  T  G  R  *  L  *  A  A  W  T  *  G  S  I  *  Y  I  C  W  T  Q  Q  L  S  *  L  V  Y  Q  T  R  R  S  V  S  I  R  W  L  H  G  S  E  R  V  N  C  T  C  *  A  L  R  E  Y  G  Y  F  L  F  I  R  I  G  V  L  F  *  F  F  C  K  L  L  H  F  K  L  F  L  G  E  *  F  H  S  F  P  L  C  S  F  M  N  *  L  N  S  V  M  L  L  S  *  V  F  V :   P  R  T  Q   : T  Q  K  K  L   </first_frame>
            <second_frame>  N  M  *  N  P  Y  H  I  L  Y  S  S  P  R  *  V  S  R  N  *  K  Y  P  T  L  Y  W  A  L  N  T  Y  Q  T  F  L  S  F  G  N  F  K  N  S  N  *  I  L  L  N  L  R  V  K  N  G  K  *  G  K  T  S  S  L  N  S  K  F  *  K  *  *  T  A  P  V  L  E  N  G  L  S  P  M  M  H  F  L  T  F  N  T  C  F  C  V  V  V  S  H  L  W  R  S  L  L  G  S  Q  K  F  I  L  *  S  T  L  R  W  I  I  A  M  D  L  L  L  N  Q  P  G  L  S  K  T  Q  K  L  K  I  M  M  L  I  W  S  S  S  S  R  L  I  I  Q  :  M  V  L  L  E  G  N  C  K  L  R  G  H  K  V  L  S  S  I  Y  V  G  H  N  N  Y  L  N  W  F  T  R  H  V  D  Q  S  P  S  G  G  S  M  A  R  S  V  *  T  V  H  A  K  H  *  E  S  M  G  I  F  C  S  F  V  *  V  C  F  S  D  F  S  V  S  Y  Y  I  L  N  S  F  *  V  N  D  F  T  H  S  P  C  V  L  L  *  T  N  *  I  L  L  C  Y  *  A  E  F  L   : F  R  E  L  K  :  H  K  R  S  L  </second_frame>
            <third_frame>   T  C  R  I  P  T  I  S  C  I  H  L  R  V  E  S  R  E  I  E  S  I  L  L  Y  T  G  L  S  T  L  I  K  H  F  S  A  S  E  T  S  R  T  R  T  E  F  C  *  I  *  G  *  K  M  G  S  E  G  R  R  V  R  *  T  Q  S  F  E  N  S  E  L  L  Q  F  *  R  M  D  C  L  R  *  C  I  F  *  P  S  T  H  V  S  A  L  L  S  V  T  C  G  D  P  F  L  V  R  R  N  S  F  S  K  V  H  *  G  G  *  L  Q  W  I  C  C  *  I  S  Q  D  Y  P  K  H  K  S  *  R  L  *  C  *  F  G  A  R  H  Q  D  S  *  F  R :   W  C  Y  W  K  V  T  V  S  C  V  D  I  R  F  Y  L  V  Y  M  L  D  T  T  I  I  L  I  G  L  P  D  T  S  I  S  L  H  Q  V  A  P  W  L  G  A  C  E  L  Y  M  L  S  I  E  R  V  W  V  F  S  V  H  S  Y  R  C  A  F  L  I  F  L  *  V  I  T  F  *  T  L  F  R  *  M  I  S  L  I  P  L  V  F  F  Y  E  L  T  K  F  C  Y  V  I  E  L  S  F  C  :  S  A  N  S  N :   T  K  E  A  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14145" stop="13683"/>
                    <exon start="13535" stop="13516"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EHVESLPYLVFISALSLEKLKVSYFILGSQHLSNISQLRKLQELELNFVEFEGEKWEVREDEFVELKVLKIVNCSSFREWTVSDDAFSNLQHMFLRCCQSLVEIPSWFAEIHSLKYIEVDNCNGSVVESARTIQNTKVEDYDVDLELVIKTHNSDGVTGR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13687" stop="13683"/>
                    <exon start="13535" stop="13313"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRWCYWKVTVSCVDIRFYLVYMLDTTIILIGLPDTSISLHQVAPWLGACELYMLSIERVWVFSVHSYRCAFLIFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="15590" PGL_stop="15144"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15590" e_stop="15144"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="15590" e_stop="15144" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15590" stop="15144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436570" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCTCCTTGATGACATACCAAATGATAGCGCGTGGGATGATTTGGAATCTTGCTTCTATGATGCCAATAATGGAAGTAGAATTCTTCTAACAACGCGAAACTCTAATGTTGCCTACTATGCTAGATCAATTAGTCAACCCCTATATCTTCGCATGCTGAATGATGGTGAAAGTTGGACATTACTAAAAAAGAAAGTATTTGGTGAAGGATTCTGCTCCCCTCTCTTTGAAAAAGTTGGGCCCAAGATAGTACGAAAGTGTGGGGGGCTGCCTCTTTCAATTGTTTTTGTGGCCTCTATACTAGCTGGGATGGAGAGGACGGAACAATGTTGGAAGCAAGTGGCTAGGAGTTTAGGTACTGAAATAAGCTGTTACCCGGAGAACATTATAGAACAAAGTTATCAGAACTTGCCGTATCATTTAAAGTCCTGCTTTCTTTACTTTGGA</gDNA_template>
            <first_frame> I  L  L  D  D  I  P  N  D  S  A  W  D  D  L  E  S  C  F  Y  D  A  N  N  G  S  R  I  L  L  T  T  R  N  S  N  V  A  Y  Y  A  R  S  I  S  Q  P  L  Y  L  R  M  L  N  D  G  E  S  W  T  L  L  K  K  K  V  F  G  E  G  F  C  S  P  L  F  E  K  V  G  P  K  I  V  R  K  C  G  G  L  P  L  S  I  V  F  V  A  S  I  L  A  G  M  E  R  T  E  Q  C  W  K  Q  V  A  R  S  L  G  T  E  I  S  C  Y  P  E  N  I  I  E  Q  S  Y  Q  N  L  P  Y  H  L  K  S  C  F  L  Y  F  G </first_frame>
            <second_frame>  S  S  L  M  T  Y  Q  M  I  A  R  G  M  I  W  N  L  A  S  M  M  P  I  M  E  V  E  F  F  *  Q  R  E  T  L  M  L  P  T  M  L  D  Q  L  V  N  P  Y  I  F  A  C  *  M  M  V  K  V  G  H  Y  *  K  R  K  Y  L  V  K  D  S  A  P  L  S  L  K  K  L  G  P  R  *  Y  E  S  V  G  G  C  L  F  Q  L  F  L  W  P  L  Y  *  L  G  W  R  G  R  N  N  V  G  S  K  W  L  G  V  *  V  L  K  *  A  V  T  R  R  T  L  *  N  K  V  I  R  T  C  R  I  I  *  S  P  A  F  F  T  L   </second_frame>
            <third_frame>   P  P  *  *  H  T  K  *  *  R  V  G  *  F  G  I  L  L  L  *  C  Q  *  W  K  *  N  S  S  N  N  A  K  L  *  C  C  L  L  C  *  I  N  *  S  T  P  I  S  S  H  A  E  *  W  *  K  L  D  I  T  K  K  E  S  I  W  *  R  I  L  L  P  S  L  *  K  S  W  A  Q  D  S  T  K  V  W  G  A  A  S  F  N  C  F  C  G  L  Y  T  S  W  D  G  E  D  G  T  M  L  E  A  S  G  *  E  F  R  Y  *  N  K  L  L  P  G  E  H  Y  R  T  K  L  S  E  L  A  V  S  F  K  V  L  L  S  L  L  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15590" stop="15144"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILLDDIPNDSAWDDLESCFYDANNGSRILLTTRNSNVAYYARSISQPLYLRMLNDGESWTLLKKKVFGEGFCSPLFEKVGPKIVRKCGGLPLSIVFVASILAGMERTEQCWKQVARSLGTEISCYPENIIEQSYQNLPYHLKSCFLYFG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="25214" PGL_stop="24346"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25214" e_stop="24694"/>
            <exon e_start="24546" e_stop="24346"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.995" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="25214" e_stop="24694" e_length="521"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.995">
            <gDNA_intron_boundary i_start="24693" i_stop="24547" i_length="147"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24546" e_stop="24346" e_length="201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25214" stop="24694"/>
              <exon start="24546" stop="24346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542031" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAGCAAACTTAATAAGCTTGAAATGCTCAAGATTTCTTCTGGTGAACAATTGACCTGGATCAATGATTTGAACATCCCAAGAAACTTGAAGAAGTTGACACTGTCCTATTTCCGGATAGATCTTAATGAAGTCGCAACCCTTTCAAATCTTGAGGTACTCAAGCTGCTAGAAGTTACCATTAGATCCAATGTATGGGAAGTGAACGATGAGCAGTTCCTTCGACTCAGAATCTTGAAACTAGAAAATCCTTCTTTTTCAAGATGGTATGCCTCAGATGATGCCTTTCCATGCCTTGAACGCTTGGAACTGAAAAGATGCCAGCACCTCAAGAACATCCCTTATTGTTTTGAGCATTCTTCGTCCCTGAAATCGCTTAAGATTATATCCTGCAATGACATGCTTGCCAATTCAGTCATGCAAACCAAAGAATCATCAAAGTATTTGCACGGAGCTTCTGGTTTCGAGGTCTTCATCCACTAGTATAACAGTAACAACTCAACTCTCAAATTGGTTATCAG : GTGAGTCTCGAGCTATTTGGAGCTAAACCATAGTTAAACGAGCAGGGAAACGACCAAACCAAGGAAATAAATATTCTGAAGTGTATTCAATGATCTGTTCATGATTAACTAATAATTGGAAATTATTATGCGATGATTGGACTATGAAACGATATTCATAGTAAAAATTATTATGCAATGATTTGTTCTATGTTGATCAAA</gDNA_template>
            <first_frame> F  S  K  L  N  K  L  E  M  L  K  I  S  S  G  E  Q  L  T  W  I  N  D  L  N  I  P  R  N  L  K  K  L  T  L  S  Y  F  R  I  D  L  N  E  V  A  T  L  S  N  L  E  V  L  K  L  L  E  V  T  I  R  S  N  V  W  E  V  N  D  E  Q  F  L  R  L  R  I  L  K  L  E  N  P  S  F  S  R  W  Y  A  S  D  D  A  F  P  C  L  E  R  L  E  L  K  R  C  Q  H  L  K  N  I  P  Y  C  F  E  H  S  S  S  L  K  S  L  K  I  I  S  C  N  D  M  L  A  N  S  V  M  Q  T  K  E  S  S  K  Y  L  H  G  A  S  G  F  E  V  F  I  H  *  Y  N  S  N  N  S  T  L  K  L  V  I  R :   *  V  S  S  Y  L  E  L  N  H  S  *  T  S  R  E  T  T  K  P  R  K  *  I  F  *  S  V  F  N  D  L  F  M  I  N  *  *  L  E  I  I  M  R  *  L  D  Y  E  T  I  F  I  V  K  I  I  M  Q  *  F  V  L  C  *  S   </first_frame>
            <second_frame>  L  A  N  L  I  S  L  K  C  S  R  F  L  L  V  N  N  *  P  G  S  M  I  *  T  S  Q  E  T  *  R  S  *  H  C  P  I  S  G  *  I  L  M  K  S  Q  P  F  Q  I  L  R  Y  S  S  C  *  K  L  P  L  D  P  M  Y  G  K  *  T  M  S  S  S  F  D  S  E  S  *  N  *  K  I  L  L  F  Q  D  G  M  P  Q  M  M  P  F  H  A  L  N  A  W  N  *  K  D  A  S  T  S  R  T  S  L  I  V  L  S  I  L  R  P  *  N  R  L  R  L  Y  P  A  M  T  C  L  P  I  Q  S  C  K  P  K  N  H  Q  S  I  C  T  E  L  L  V  S  R  S  S  S  T  S  I  T  V  T  T  Q  L  S  N  W  L  S   : G  E  S  R  A  I  W  S  *  T  I  V  K  R  A  G  K  R  P  N  Q  G  N  K  Y  S  E  V  Y  S  M  I  C  S  *  L  T  N  N  W  K  L  L  C  D  D  W  T  M  K  R  Y  S  *  *  K  L  L  C  N  D  L  F  Y  V  D  Q  </second_frame>
            <third_frame>   *  Q  T  *  *  A  *  N  A  Q  D  F  F  W  *  T  I  D  L  D  Q  *  F  E  H  P  K  K  L  E  E  V  D  T  V  L  F  P  D  R  S  *  *  S  R  N  P  F  K  S  *  G  T  Q  A  A  R  S  Y  H  *  I  Q  C  M  G  S  E  R  *  A  V  P  S  T  Q  N  L  E  T  R  K  S  F  F  F  K  M  V  C  L  R  *  C  L  S  M  P  *  T  L  G  T  E  K  M  P  A  P  Q  E  H  P  L  L  F  *  A  F  F  V  P  E  I  A  *  D  Y  I  L  Q  *  H  A  C  Q  F  S  H  A  N  Q  R  I  I  K  V  F  A  R  S  F  W  F  R  G  L  H  P  L  V  *  Q  *  Q  L  N  S  Q  I  G  Y  Q  :  V  S  L  E  L  F  G  A  K  P  *  L  N  E  Q  G  N  D  Q  T  K  E  I  N  I  L  K  C  I  Q  *  S  V  H  D  *  L  I  I  G  N  Y  Y  A  M  I  G  L  *  N  D  I  H  S  K  N  Y  Y  A  M  I  C  S  M  L  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25214" stop="24732"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSKLNKLEMLKISSGEQLTWINDLNIPRNLKKLTLSYFRIDLNEVATLSNLEVLKLLEVTIRSNVWEVNDEQFLRLRILKLENPSFSRWYASDDAFPCLERLELKRCQHLKNIPYCFEHSSSLKSLKIISCNDMLANSVMQTKESSKYLHGASGFEVFIH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="26373" PGL_stop="25600"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26373" e_stop="25886"/>
            <exon e_start="25803" e_stop="25600"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26373" e_stop="25886" e_length="488"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="25885" i_stop="25804" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25803" e_stop="25600" e_length="204"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26373" stop="25886"/>
              <exon start="25803" stop="25600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26372" stop="25886"/>
              <exon start="25803" stop="25786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGTTTTAGAGGATGTTGGAAGAAGCATAGCACAAAAGTGTCAAGGGCTGCCCCTATCAATTGTTCTGGTAGCAGGTGTTCTTGCAAGGATGCCGAAGGAAAGACATCGCTGGGAACAAGTGGCAACCAAATTAAGTGTAGATATTCAGGCTCACTTTGAACGTACCATGGAACTTAGCTATTGGTATTTACCACATCATTTGAGAAAATGCTTATTATATCTTGCAGTATTTTCGGAGGGCAGAGAGATTCAAGTCTCAAAGTTAACATGGTTATGGATATCAGAAGGTTTTGTGAAAACTCACTCGGAGAGGCTTCCGGAGGATATTGCAGATGATTACATGGAGAATCTTGTTGAGAGAAACCTAGTGATGGTTTCTAAAAGAAGTTTTGATGGTAAGATCAAGGCATGTCATATTCATGATCTGTTGCTTGAATTTTGCAGGAAGAAAGCCGAGTTGGAGAGTTTCGCACAGAGGATAAAAGG : GGACATATTTGACCTTTATCGAAAGACCAGGACTTCATGGCGTTTTTCCCTTCATTCTCGGTGTGATAATCTTACATTGTGTTCGTATTTCTCTAATCTGAAGTCTTTCCAATTCAGGGAGGTTAGAAATACTGCATTCTCTTCGATAGATCATGCATCAGACATTTTTAAAAGGTTCAGCTTTCTGAAGGTGTTAGATTTTGA</gDNA_template>
            <first_frame> L  V  L  E  D  V  G  R  S  I  A  Q  K  C  Q  G  L  P  L  S  I  V  L  V  A  G  V  L  A  R  M  P  K  E  R  H  R  W  E  Q  V  A  T  K  L  S  V  D  I  Q  A  H  F  E  R  T  M  E  L  S  Y  W  Y  L  P  H  H  L  R  K  C  L  L  Y  L  A  V  F  S  E  G  R  E  I  Q  V  S  K  L  T  W  L  W  I  S  E  G  F  V  K  T  H  S  E  R  L  P  E  D  I  A  D  D  Y  M  E  N  L  V  E  R  N  L  V  M  V  S  K  R  S  F  D  G  K  I  K  A  C  H  I  H  D  L  L  L  E  F  C  R  K  K  A  E  L  E  S  F  A  Q  R  I  K  G :   D  I  F  D  L  Y  R  K  T  R  T  S  W  R  F  S  L  H  S  R  C  D  N  L  T  L  C  S  Y  F  S  N  L  K  S  F  Q  F  R  E  V  R  N  T  A  F  S  S  I  D  H  A  S  D  I  F  K  R  F  S  F  L  K  V  L  D  F   </first_frame>
            <second_frame>  W  F  *  R  M  L  E  E  A  *  H  K  S  V  K  G  C  P  Y  Q  L  F  W  *  Q  V  F  L  Q  G  C  R  R  K  D  I  A  G  N  K  W  Q  P  N  *  V  *  I  F  R  L  T  L  N  V  P  W  N  L  A  I  G  I  Y  H  I  I  *  E  N  A  Y  Y  I  L  Q  Y  F  R  R  A  E  R  F  K  S  Q  S  *  H  G  Y  G  Y  Q  K  V  L  *  K  L  T  R  R  G  F  R  R  I  L  Q  M  I  T  W  R  I  L  L  R  E  T  *  *  W  F  L  K  E  V  L  M  V  R  S  R  H  V  I  F  M  I  C  C  L  N  F  A  G  R  K  P  S  W  R  V  S  H  R  G  *  K   : G  T  Y  L  T  F  I  E  R  P  G  L  H  G  V  F  P  F  I  L  G  V  I  I  L  H  C  V  R  I  S  L  I  *  S  L  S  N  S  G  R  L  E  I  L  H  S  L  R  *  I  M  H  Q  T  F  L  K  G  S  A  F  *  R  C  *  I  L  </second_frame>
            <third_frame>   G  F  R  G  C  W  K  K  H  S  T  K  V  S  R  A  A  P  I  N  C  S  G  S  R  C  S  C  K  D  A  E  G  K  T  S  L  G  T  S  G  N  Q  I  K  C  R  Y  S  G  S  L  *  T  Y  H  G  T  *  L  L  V  F  T  T  S  F  E  K  M  L  I  I  S  C  S  I  F  G  G  Q  R  D  S  S  L  K  V  N  M  V  M  D  I  R  R  F  C  E  N  S  L  G  E  A  S  G  G  Y  C  R  *  L  H  G  E  S  C  *  E  K  P  S  D  G  F  *  K  K  F  *  W  *  D  Q  G  M  S  Y  S  *  S  V  A  *  I  L  Q  E  E  S  R  V  G  E  F  R  T  E  D  K  R  :  G  H  I  *  P  L  S  K  D  Q  D  F  M  A  F  F  P  S  F  S  V  *  *  S  Y  I  V  F  V  F  L  *  S  E  V  F  P  I  Q  G  G  *  K  Y  C  I  L  F  D  R  S  C  I  R  H  F  *  K  V  Q  L  S  E  G  V  R  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26373" stop="25886"/>
                    <exon start="25803" stop="25602"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVLEDVGRSIAQKCQGLPLSIVLVAGVLARMPKERHRWEQVATKLSVDIQAHFERTMELSYWYLPHHLRKCLLYLAVFSEGREIQVSKLTWLWISEGFVKTHSERLPEDIADDYMENLVERNLVMVSKRSFDGKIKACHIHDLLLEFCRKKAELESFAQRIKGDIFDLYRKTRTSWRFSLHSRCDNLTLCSYFSNLKSFQFREVRNTAFSSIDHASDIFKRFSFLKVLDF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="36553" PGL_stop="37114"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36553" e_stop="37114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36553" e_stop="37114" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36553" stop="36996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36634" stop="37114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267821" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATGGTCCATCAACCACCGCAAAAGCCATCACCGAAACCGAAATCGCGGCGGAGTTCTCACACCACGACCTCACCATAGCCCGAATCAACAACGGCAGTTTCGGGTCATGCCCGAAATCCATAATCTCCGCTCAACAACAATGGCAGCTTCAATTCCTTCAACAACCCGATTACTTCTACTTCAACACCTTGAAACCCTCGATGCTTAAATCCCGTGCCTTAGTAAAATCCTTAGTCAACGCCGCCGACGTCGAGGAAATCTCCATCGTCGATAACGCCACAACCGCCGCCGCAATCGTTCTCCAATACATAACCTGGTCTTTCTTCACCTCCGATTTCCGTCCCGGCGACGCCGCCGTTATGCTCCACTACGCTTATGGCTCCGTTAAAAGTTCAGTTCAGGCGTACGTTGCACGAGCTGGAGGAAAGGTAATTGAGGTACATTTACCTTTTCCGTTGAATTCGAATGAAGAAATTGTTACTGAATTTGATAAAGCTCTTAAAATGGGGAAAATGAATGGGGGAAAAATTAGATTAGCTGTGATTGATCATATTACTTCA</gDNA_template>
            <first_frame> K  W  S  I  N  H  R  K  S  H  H  R  N  R  N  R  G  G  V  L  T  P  R  P  H  H  S  P  N  Q  Q  R  Q  F  R  V  M  P  E  I  H  N  L  R  S  T  T  M  A  A  S  I  P  S  T  T  R  L  L  L  L  Q  H  L  E  T  L  D  A  *  I  P  C  L  S  K  I  L  S  Q  R  R  R  R  R  G  N  L  H  R  R  *  R  H  N  R  R  R  N  R  S  P  I  H  N  L  V  F  L  H  L  R  F  P  S  R  R  R  R  R  Y  A  P  L  R  L  W  L  R  *  K  F  S  S  G  V  R  C  T  S  W  R  K  G  N  *  G  T  F  T  F  S  V  E  F  E  *  R  N  C  Y  *  I  *  *  S  S  *  N  G  E  N  E  W  G  K  N  *  I  S  C  D  *  S  Y  Y  F  </first_frame>
            <second_frame>  N  G  P  S  T  T  A  K  A  I  T  E  T  E  I  A  A  E  F  S  H  H  D  L  T  I  A  R  I  N  N  G  S  F  G  S  C  P  K  S  I  I  S  A  Q  Q  Q  W  Q  L  Q  F  L  Q  Q  P  D  Y  F  Y  F  N  T  L  K  P  S  M  L  K  S  R  A  L  V  K  S  L  V  N  A  A  D  V  E  E  I  S  I  V  D  N  A  T  T  A  A  A  I  V  L  Q  Y  I  T  W  S  F  F  T  S  D  F  R  P  G  D  A  A  V  M  L  H  Y  A  Y  G  S  V  K  S  S  V  Q  A  Y  V  A  R  A  G  G  K  V  I  E  V  H  L  P  F  P  L  N  S  N  E  E  I  V  T  E  F  D  K  A  L  K  M  G  K  M  N  G  G  K  I  R  L  A  V  I  D  H  I  T  S </second_frame>
            <third_frame>   M  V  H  Q  P  P  Q  K  P  S  P  K  P  K  S  R  R  S  S  H  T  T  T  S  P  *  P  E  S  T  T  A  V  S  G  H  A  R  N  P  *  S  P  L  N  N  N  G  S  F  N  S  F  N  N  P  I  T  S  T  S  T  P  *  N  P  R  C  L  N  P  V  P  *  *  N  P  *  S  T  P  P  T  S  R  K  S  P  S  S  I  T  P  Q  P  P  P  Q  S  F  S  N  T  *  P  G  L  S  S  P  P  I  S  V  P  A  T  P  P  L  C  S  T  T  L  M  A  P  L  K  V  Q  F  R  R  T  L  H  E  L  E  E  R  *  L  R  Y  I  Y  L  F  R  *  I  R  M  K  K  L  L  L  N  L  I  K  L  L  K  W  G  K  *  M  G  E  K  L  D  *  L  *  L  I  I  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36554" stop="37114"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGPSTTAKAITETEIAAEFSHHDLTIARINNGSFGSCPKSIISAQQQWQLQFLQQPDYFYFNTLKPSMLKSRALVKSLVNAADVEEISIVDNATTAAAIVLQYITWSFFTSDFRPGDAAVMLHYAYGSVKSSVQAYVARAGGKVIEVHLPFPLNSNEEIVTEFDKALKMGKMNGGKIRLAVIDHITS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="56514" PGL_stop="57344"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56514" e_stop="56722"/>
            <exon e_start="56809" e_stop="57344"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="0.976"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="56514" e_stop="56722" e_length="209"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56723" i_stop="56808" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="56809" e_stop="57344" e_length="536"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56514" stop="56722"/>
              <exon start="56809" stop="57344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736950" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAAGAATACTATATTTGTGTTCTCTTTTTCTTTACTTGTATACATGGGAAAATCATGAGTCCCAAGAAAATCTTTTTGCTCAAAAGCCACTTTAATAAAAATGTTTTTGAGTCAATTTATGTGCAGAACAATGACTTGGTTTTTCACTTCTATTTGGGGTTTCTTGTGTTGGTTTGTTTCCAAGATTTGCTTTTTCTTAGAGAACAG : GAGGGTTGTTGATGAAAATGATGAAATGGACTGTAAAAATCGGAAAAGATTAGATTTTGATGAGAAGGGTGTGGAAAAAGAGAGTTCTTTTTTGGTTCAGAGTAAGTATGAGTATATATCTGGTAAAGATTCTTTTGGTTTTATAGAGAAATCAGAAGCTAAAAGTTTTTTAGTTGAAGAAATGTTTGTGAATTTTAATGAAGGAGAAGGGGTTGTAGAAAAAGAGATTGATAAAAATTCTGATGATAAATTGTTTTATTTCTCTTTTTTCAAAAATGGAAGTGTTTATCAAGAAAAATCAGAGCTTTTTGATGAAAAAAATGCTAATGATCAAGAAAAGTTGGAATTTTTAGATGAAAAGGGAGATAATCTTTGTTTTGAGGAGATTTTGAGGAAAAATGATGAAGTTTTTAGTGATATTGAAACACGGGATTCAGAGGATATGTGTTATGAAATTCAATTGCTTCCTGAGAATGAGTCTTTAATTCGAAATTCGATTCGAGGGTCTGAGGGTCTTGGAGATGAATTATGTTCTA</gDNA_template>
            <first_frame> I  K  N  T  I  F  V  F  S  F  S  L  L  V  Y  M  G  K  S  *  V  P  R  K  S  F  C  S  K  A  T  L  I  K  M  F  L  S  Q  F  M  C  R  T  M  T  W  F  F  T  S  I  W  G  F  L  C  W  F  V  S  K  I  C  F  F  L  E  N  R :   R  V  V  D  E  N  D  E  M  D  C  K  N  R  K  R  L  D  F  D  E  K  G  V  E  K  E  S  S  F  L  V  Q  S  K  Y  E  Y  I  S  G  K  D  S  F  G  F  I  E  K  S  E  A  K  S  F  L  V  E  E  M  F  V  N  F  N  E  G  E  G  V  V  E  K  E  I  D  K  N  S  D  D  K  L  F  Y  F  S  F  F  K  N  G  S  V  Y  Q  E  K  S  E  L  F  D  E  K  N  A  N  D  Q  E  K  L  E  F  L  D  E  K  G  D  N  L  C  F  E  E  I  L  R  K  N  D  E  V  F  S  D  I  E  T  R  D  S  E  D  M  C  Y  E  I  Q  L  L  P  E  N  E  S  L  I  R  N  S  I  R  G  S  E  G  L  G  D  E  L  C  S  </first_frame>
            <second_frame>  L  R  I  L  Y  L  C  S  L  F  L  Y  L  Y  T  W  E  N  H  E  S  Q  E  N  L  F  A  Q  K  P  L  *  *  K  C  F  *  V  N  L  C  A  E  Q  *  L  G  F  S  L  L  F  G  V  S  C  V  G  L  F  P  R  F  A  F  S  *  R  T   : G  G  L  L  M  K  M  M  K  W  T  V  K  I  G  K  D  *  I  L  M  R  R  V  W  K  K  R  V  L  F  W  F  R  V  S  M  S  I  Y  L  V  K  I  L  L  V  L  *  R  N  Q  K  L  K  V  F  *  L  K  K  C  L  *  I  L  M  K  E  K  G  L  *  K  K  R  L  I  K  I  L  M  I  N  C  F  I  S  L  F  S  K  M  E  V  F  I  K  K  N  Q  S  F  L  M  K  K  M  L  M  I  K  K  S  W  N  F  *  M  K  R  E  I  I  F  V  L  R  R  F  *  G  K  M  M  K  F  L  V  I  L  K  H  G  I  Q  R  I  C  V  M  K  F  N  C  F  L  R  M  S  L  *  F  E  I  R  F  E  G  L  R  V  L  E  M  N  Y  V  L </second_frame>
            <third_frame>   *  E  Y  Y  I  C  V  L  F  F  F  T  C  I  H  G  K  I  M  S  P  K  K  I  F  L  L  K  S  H  F  N  K  N  V  F  E  S  I  Y  V  Q  N  N  D  L  V  F  H  F  Y  L  G  F  L  V  L  V  C  F  Q  D  L  L  F  L  R  E  Q  :  E  G  C  *  *  K  *  *  N  G  L  *  K  S  E  K  I  R  F  *  *  E  G  C  G  K  R  E  F  F  F  G  S  E  *  V  *  V  Y  I  W  *  R  F  F  W  F  Y  R  E  I  R  S  *  K  F  F  S  *  R  N  V  C  E  F  *  *  R  R  R  G  C  R  K  R  D  *  *  K  F  *  *  *  I  V  L  F  L  F  F  Q  K  W  K  C  L  S  R  K  I  R  A  F  *  *  K  K  C  *  *  S  R  K  V  G  I  F  R  *  K  G  R  *  S  L  F  *  G  D  F  E  E  K  *  *  S  F  *  *  Y  *  N  T  G  F  R  G  Y  V  L  *  N  S  I  A  S  *  E  *  V  F  N  S  K  F  D  S  R  V  *  G  S  W  R  *  I  M  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56574" stop="56722"/>
                    <exon start="56809" stop="57343"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPRKSFCSKATLIKMFLSQFMCRTMTWFFTSIWGFLCWFVSKICFFLENRRVVDENDEMDCKNRKRLDFDEKGVEKESSFLVQSKYEYISGKDSFGFIEKSEAKSFLVEEMFVNFNEGEGVVEKEIDKNSDDKLFYFSFFKNGSVYQEKSELFDEKNANDQEKLEFLDEKGDNLCFEEILRKNDEVFSDIETRDSEDMCYEIQLLPENESLIRNSIRGSEGLGDELCS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="57570" PGL_stop="60760"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57570" e_stop="58358"/>
            <exon e_start="59399" e_stop="59812"/>
            <exon e_start="59885" e_stop="60009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.969" e_score="0.999"/>
          <exon-intron don_prob="0.982" acc_prob="0.526" e_score="0.949"/>
          <exon-only e_score="0.808"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="57570" e_stop="58358" e_length="789"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.969">
            <gDNA_intron_boundary i_start="58359" i_stop="59398" i_length="1040"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="59399" e_stop="59812" e_length="414"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.526">
            <gDNA_intron_boundary i_start="59813" i_stop="59884" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="0.808">
            <gDNA_exon_boundary e_start="59885" e_stop="60009" e_length="125"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57570" stop="58272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57571" stop="58017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58253" stop="58358"/>
              <exon start="59399" stop="59812"/>
              <exon start="59885" stop="60009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561896" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCGAGTCGAAAATCATGGGATATCGATGATTTTGCTTCTCAAAATGTTGACAGAGTAGAGGAAACAGATGTGAATGGTGAGGAAATGAAGTTAATGGATGATATTCAAGAATCACCAGATCATAATTCGAGTCGAAACTCATTGTACATGGATGGTTTTGCTTCTCAAAATGTTGACGGAGTTGAAGAAACAAATGTGAACTATGAGGACTTGAAGTTAATGGATGATTTTCAAGATTCTCCGAATCATAATTCGAGTCGAAAATCATGGGATACAGATGGTTTTGCTTCTCAAAATGTTGACAGAGTTGAGGAAACAGATGTGAACTATGAGGAAATGGATGATTTTCAAGATTCTCCAAATCATCATTCGAATCGAAAATCATGGGAAATGGATGGTTTTGCTTCTCAAAATGTTGATATAGTTGAGGAAACAGATGTGAACTATGAGGAAATGGATGATTTTCAAGAATCACCAGATCATAATTCGAGTCGAAAATTATGGGATACTGATTCAGATTCGGATGACGATGATGATATCTTGTTAGAACATCAGAATTTAGTCAGGCAAATGAAAATGGAAATGAAAAATTCAAGAATCACAGGTCTGCCTACTATATCAGAAGATTATGAATCTCCTAAAGTAGTAGAAGATATGAAGCCATTGAAAATTGATGAAAAAATTGGATACAAATATTGTATCGAAGAAATTCAGAAATTTTACAAGAGCTATGCTGAAAAGATGAAAAAATTGGACATCTTGAATTACCAGACATTGAATGCTATCA : GTTTTCTTCAGCTTAAGGATTCCGAAGGGTTTATGTCGAGCAAAAAAACGTCAATGTCGATAGCCAAAGCCTTTGCTTTACCAAGCTTCTTGGCAAACAAACAAAGGAAGATCTTTGCTGATCCTGCACAAAAATCCATTTGTGAAATGAATAGAGACTTGGAAATAGTATATGTTGGGCAAATTTGCCTATCATGGGAAATTCTCTATTGGCAATATGGTAAAGCTAAGGACTTGCTTGAACATGATCCACATGAGTATCACACATATAACCAAGTTGCCGGAGAATATCAGCAATTTCAAGTACTTTTACAAAGATTTGTCGAGGATGAGCCATTTCAAGGACCACGAGTCCAATATTATGTCAGGAAGAGGTGCATTCTCCGTAGCTTTCTTCAAGTCCCGAGCATTAGAG : CAGATGATCGTTTTAAGGGTAAGAAGGGAGGACGAGAAGAGGAAAAGGATGTCATTTCCATAATGAAATTGGGCGACGTTATTAAGGAGACGATGCAAGTTTTCTGGGAGTTTCTTCGTGCTGAT</gDNA_template>
            <first_frame> I  R  V  E  N  H  G  I  S  M  I  L  L  L  K  M  L  T  E  *  R  K  Q  M  *  M  V  R  K  *  S  *  W  M  I  F  K  N  H  Q  I  I  I  R  V  E  T  H  C  T  W  M  V  L  L  L  K  M  L  T  E  L  K  K  Q  M  *  T  M  R  T  *  S  *  W  M  I  F  K  I  L  R  I  I  I  R  V  E  N  H  G  I  Q  M  V  L  L  L  K  M  L  T  E  L  R  K  Q  M  *  T  M  R  K  W  M  I  F  K  I  L  Q  I  I  I  R  I  E  N  H  G  K  W  M  V  L  L  L  K  M  L  I  *  L  R  K  Q  M  *  T  M  R  K  W  M  I  F  K  N  H  Q  I  I  I  R  V  E  N  Y  G  I  L  I  Q  I  R  M  T  M  M  I  S  C  *  N  I  R  I  *  S  G  K  *  K  W  K  *  K  I  Q  E  S  Q  V  C  L  L  Y  Q  K  I  M  N  L  L  K  *  *  K  I  *  S  H  *  K  L  M  K  K  L  D  T  N  I  V  S  K  K  F  R  N  F  T  R  A  M  L  K  R  *  K  N  W  T  S  *  I  T  R  H  *  M  L  S  :  V  F  F  S  L  R  I  P  K  G  L  C  R  A  K  K  R  Q  C  R  *  P  K  P  L  L  Y  Q  A  S  W  Q  T  N  K  G  R  S  L  L  I  L  H  K  N  P  F  V  K  *  I  E  T  W  K  *  Y  M  L  G  K  F  A  Y  H  G  K  F  S  I  G  N  M  V  K  L  R  T  C  L  N  M  I  H  M  S  I  T  H  I  T  K  L  P  E  N  I  S  N  F  K  Y  F  Y  K  D  L  S  R  M  S  H  F  K  D  H  E  S  N  I  M  S  G  R  G  A  F  S  V  A  F  F  K  S  R  A  L  E  :  Q  M  I  V  L  R  V  R  R  E  D  E  K  R  K  R  M  S  F  P  *  *  N  W  A  T  L  L  R  R  R  C  K  F  S  G  S  F  F  V  L   </first_frame>
            <second_frame>  F  E  S  K  I  M  G  Y  R  *  F  C  F  S  K  C  *  Q  S  R  G  N  R  C  E  W  *  G  N  E  V  N  G  *  Y  S  R  I  T  R  S  *  F  E  S  K  L  I  V  H  G  W  F  C  F  S  K  C  *  R  S  *  R  N  K  C  E  L  *  G  L  E  V  N  G  *  F  S  R  F  S  E  S  *  F  E  S  K  I  M  G  Y  R  W  F  C  F  S  K  C  *  Q  S  *  G  N  R  C  E  L  *  G  N  G  *  F  S  R  F  S  K  S  S  F  E  S  K  I  M  G  N  G  W  F  C  F  S  K  C  *  Y  S  *  G  N  R  C  E  L  *  G  N  G  *  F  S  R  I  T  R  S  *  F  E  S  K  I  M  G  Y  *  F  R  F  G  *  R  *  *  Y  L  V  R  T  S  E  F  S  Q  A  N  E  N  G  N  E  K  F  K  N  H  R  S  A  Y  Y  I  R  R  L  *  I  S  *  S  S  R  R  Y  E  A  I  E  N  *  *  K  N  W  I  Q  I  L  Y  R  R  N  S  E  I  L  Q  E  L  C  *  K  D  E  K  I  G  H  L  E  L  P  D  I  E  C  Y  Q :   F  S  S  A  *  G  F  R  R  V  Y  V  E  Q  K  N  V  N  V  D  S  Q  S  L  C  F  T  K  L  L  G  K  Q  T  K  E  D  L  C  *  S  C  T  K  I  H  L  *  N  E  *  R  L  G  N  S  I  C  W  A  N  L  P  I  M  G  N  S  L  L  A  I  W  *  S  *  G  L  A  *  T  *  S  T  *  V  S  H  I  *  P  S  C  R  R  I  S  A  I  S  S  T  F  T  K  I  C  R  G  *  A  I  S  R  T  T  S  P  I  L  C  Q  E  E  V  H  S  P  *  L  S  S  S  P  E  H  *  S :   R  *  S  F  *  G  *  E  G  R  T  R  R  G  K  G  C  H  F  H  N  E  I  G  R  R  Y  *  G  D  D  A  S  F  L  G  V  S  S  C  *  </second_frame>
            <third_frame>   S  S  R  K  S  W  D  I  D  D  F  A  S  Q  N  V  D  R  V  E  E  T  D  V  N  G  E  E  M  K  L  M  D  D  I  Q  E  S  P  D  H  N  S  S  R  N  S  L  Y  M  D  G  F  A  S  Q  N  V  D  G  V  E  E  T  N  V  N  Y  E  D  L  K  L  M  D  D  F  Q  D  S  P  N  H  N  S  S  R  K  S  W  D  T  D  G  F  A  S  Q  N  V  D  R  V  E  E  T  D  V  N  Y  E  E  M  D  D  F  Q  D  S  P  N  H  H  S  N  R  K  S  W  E  M  D  G  F  A  S  Q  N  V  D  I  V  E  E  T  D  V  N  Y  E  E  M  D  D  F  Q  E  S  P  D  H  N  S  S  R  K  L  W  D  T  D  S  D  S  D  D  D  D  D  I  L  L  E  H  Q  N  L  V  R  Q  M  K  M  E  M  K  N  S  R  I  T  G  L  P  T  I  S  E  D  Y  E  S  P  K  V  V  E  D  M  K  P  L  K  I  D  E  K  I  G  Y  K  Y  C  I  E  E  I  Q  K  F  Y  K  S  Y  A  E  K  M  K  K  L  D  I  L  N  Y  Q  T  L  N  A  I   : S  F  L  Q  L  K  D  S  E  G  F  M  S  S  K  K  T  S  M  S  I  A  K  A  F  A  L  P  S  F  L  A  N  K  Q  R  K  I  F  A  D  P  A  Q  K  S  I  C  E  M  N  R  D  L  E  I  V  Y  V  G  Q  I  C  L  S  W  E  I  L  Y  W  Q  Y  G  K  A  K  D  L  L  E  H  D  P  H  E  Y  H  T  Y  N  Q  V  A  G  E  Y  Q  Q  F  Q  V  L  L  Q  R  F  V  E  D  E  P  F  Q  G  P  R  V  Q  Y  Y  V  R  K  R  C  I  L  R  S  F  L  Q  V  P  S  I  R   : A  D  D  R  F  K  G  K  K  G  G  R  E  E  E  K  D  V  I  S  I  M  K  L  G  D  V  I  K  E  T  M  Q  V  F  W  E  F  L  R  A  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57572" stop="58358"/>
                    <exon start="59399" stop="59812"/>
                    <exon start="59885" stop="60009"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1326</number_coding_nucleotides>
                  <number_encoded_amino_acids>442</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSRKSWDIDDFASQNVDRVEETDVNGEEMKLMDDIQESPDHNSSRNSLYMDGFASQNVDGVEETNVNYEDLKLMDDFQDSPNHNSSRKSWDTDGFASQNVDRVEETDVNYEEMDDFQDSPNHHSNRKSWEMDGFASQNVDIVEETDVNYEEMDDFQESPDHNSSRKLWDTDSDSDDDDDILLEHQNLVRQMKMEMKNSRITGLPTISEDYESPKVVEDMKPLKIDEKIGYKYCIEEIQKFYKSYAEKMKKLDILNYQTLNAISFLQLKDSEGFMSSKKTSMSIAKAFALPSFLANKQRKIFADPAQKSICEMNRDLEIVYVGQICLSWEILYWQYGKAKDLLEHDPHEYHTYNQVAGEYQQFQVLLQRFVEDEPFQGPRVQYYVRKRCILRSFLQVPSIRADDRFKGKKGGREEEKDVISIMKLGDVIKETMQVFWEFLRAD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="59793" e_stop="59812"/>
            <exon e_start="59888" e_stop="60108"/>
            <exon e_start="60284" e_stop="60760"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.383" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59793" e_stop="59812" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.383">
            <gDNA_intron_boundary i_start="59813" i_stop="59887" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59888" e_stop="60108" e_length="221"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="60109" i_stop="60283" i_length="175"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="60284" e_stop="60760" e_length="477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59793" stop="59812"/>
              <exon start="59888" stop="60108"/>
              <exon start="60284" stop="60760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395333" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAGTCCCGAGCATTAGAG : ATGATCGTTTTAAGGGTAAGAAGGGAGGACGAGAAGAGGAAAAGGATGTCATTTCCATAATGAAATTGGGCGACGTTATTAAGGAGACGATGCAAGTTTTCTGGGAGTTTCTTCGTGCTGATAAACGTGAAGCTAATTTGGCCTTAAAGGGTGTTCAAGGAACTCAAATGGACAATGCAGAAATCGAGCTTTTTATGAATGTCAAACTAGACCTTCAAAAG : AAGGAGAGGAAGTTGAAAGATGTACAAAGAAGTGGCAATTGCATAGTGAAGAAGTTCCAAAAACAACAAGAACGTCGATTGAGTCCTTCATTATTCGCGTCACTCGTGGAGCTAAAGTTGGTATCAAGAGTGCTAAGTTTACCAAGATTAAGGAGAGATCATTTGGTTTGGTGCCAGAGGAAACTAAGCAATATCAATGTTGCAGGGAGAAAAGTTAGCATGGAACAATCTTTTTCACTTTTTCCATGTTAAGTATTAGTGATTAGTATATGTCTAGTTTTTCATAATGCTAGTGAAGATCTTCTTAGGACTATAGTTCTAAGCTACGTTGTTCGGACTCTTCAAAAATGTCACCGAATGCATGTCAGATTCTCTAAAAGTAGTGTATTTTTGGAGAACCTGACACGGGTGCGACATCAAAAGTGAAAGAGTCCGCACAACTTAGGTTCTAGGCTATGTTAGTACCCAAAAAAAAAA</gDNA_template>
            <first_frame> S  S  P  E  H  *  R :   *  S  F  *  G  *  E  G  R  T  R  R  G  K  G  C  H  F  H  N  E  I  G  R  R  Y  *  G  D  D  A  S  F  L  G  V  S  S  C  *  *  T  *  S  *  F  G  L  K  G  C  S  R  N  S  N  G  Q  C  R  N  R  A  F  Y  E  C  Q  T  R  P  S  K   : E  G  E  E  V  E  R  C  T  K  K  W  Q  L  H  S  E  E  V  P  K  T  T  R  T  S  I  E  S  F  I  I  R  V  T  R  G  A  K  V  G  I  K  S  A  K  F  T  K  I  K  E  R  S  F  G  L  V  P  E  E  T  K  Q  Y  Q  C  C  R  E  K  S  *  H  G  T  I  F  F  T  F  S  M  L  S  I  S  D  *  Y  M  S  S  F  S  *  C  *  *  R  S  S  *  D  Y  S  S  K  L  R  C  S  D  S  S  K  M  S  P  N  A  C  Q  I  L  *  K  *  C  I  F  G  E  P  D  T  G  A  T  S  K  V  K  E  S  A  Q  L  R  F  *  A  M  L  V  P  K  K  K  </first_frame>
            <second_frame>  Q  V  P  S  I  R   : D  D  R  F  K  G  K  K  G  G  R  E  E  E  K  D  V  I  S  I  M  K  L  G  D  V  I  K  E  T  M  Q  V  F  W  E  F  L  R  A  D  K  R  E  A  N  L  A  L  K  G  V  Q  G  T  Q  M  D  N  A  E  I  E  L  F  M  N  V  K  L  D  L  Q  K  :  K  E  R  K  L  K  D  V  Q  R  S  G  N  C  I  V  K  K  F  Q  K  Q  Q  E  R  R  L  S  P  S  L  F  A  S  L  V  E  L  K  L  V  S  R  V  L  S  L  P  R  L  R  R  D  H  L  V  W  C  Q  R  K  L  S  N  I  N  V  A  G  R  K  V  S  M  E  Q  S  F  S  L  F  P  C  *  V  L  V  I  S  I  C  L  V  F  H  N  A  S  E  D  L  L  R  T  I  V  L  S  Y  V  V  R  T  L  Q  K  C  H  R  M  H  V  R  F  S  K  S  S  V  F  L  E  N  L  T  R  V  R  H  Q  K  *  K  S  P  H  N  L  G  S  R  L  C  *  Y  P  K  K  K </second_frame>
            <third_frame>   K  S  R  A  L  E  :  M  I  V  L  R  V  R  R  E  D  E  K  R  K  R  M  S  F  P  *  *  N  W  A  T  L  L  R  R  R  C  K  F  S  G  S  F  F  V  L  I  N  V  K  L  I  W  P  *  R  V  F  K  E  L  K  W  T  M  Q  K  S  S  F  L  *  M  S  N  *  T  F  K  R :   R  R  G  S  *  K  M  Y  K  E  V  A  I  A  *  *  R  S  S  K  N  N  K  N  V  D  *  V  L  H  Y  S  R  H  S  W  S  *  S  W  Y  Q  E  C  *  V  Y  Q  D  *  G  E  I  I  W  F  G  A  R  G  N  *  A  I  S  M  L  Q  G  E  K  L  A  W  N  N  L  F  H  F  F  H  V  K  Y  *  *  L  V  Y  V  *  F  F  I  M  L  V  K  I  F  L  G  L  *  F  *  A  T  L  F  G  L  F  K  N  V  T  E  C  M  S  D  S  L  K  V  V  Y  F  W  R  T  *  H  G  C  D  I  K  S  E  R  V  R  T  T  *  V  L  G  Y  V  S  T  Q  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59794" stop="59812"/>
                    <exon start="59888" stop="60108"/>
                    <exon start="60284" stop="60535"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVPSIRDDRFKGKKGGREEEKDVISIMKLGDVIKETMQVFWEFLRADKREANLALKGVQGTQMDNAEIELFMNVKLDLQKKERKLKDVQRSGNCIVKKFQKQQERRLSPSLFASLVELKLVSRVLSLPRLRRDHLVWCQRKLSNINVAGRKVSMEQSFSLFPC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="59693" e_stop="60108"/>
            <exon e_start="60284" e_stop="60749"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="0.998"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="59693" e_stop="60108" e_length="416"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="60109" i_stop="60283" i_length="175"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="60284" e_stop="60749" e_length="466"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59693" stop="60108"/>
              <exon start="60284" stop="60749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737249" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTCAAGTACTTTTACAAAGATTTGTCGAGGATGAGCCATTTCAAGGACCACGAGTCCAATATTATGTCAGGAAGAGGTGCATTCTCCGTAGCTTTCTTCAAGTCCCGAGCATTAGAGGTATGCATTTTTTCGTTGAGTTGTTAAAATACCTAGACTCATAGTAACGAGAGGAATACTTTGACTGTCTAGCAGATGATCGTTTTAAGGGTAAGAAGGGAGGACGAGAAGAGGAAAAGGATGTCATTTCCATAATGAAATTGGGCGACGTTATTAAGGAGACGATGCAAGTTTTCTGGGAGTTTCTTCGTGCTGATAAACGTGAAGCTAATTTGGCCTTAAAGGGTGTTCAAGGAACTCAAATGGACAATGCAGAAATCGAGCTTTTTATGAATGTCAAACTAGACCTTCAAAAG : AAGGAGAGGAAGTTGAAAGATGTACAAAGAAGTGGCAATTGCATAGTGAAGAAGTTCCAAAAACAACAAGAACGTCGATTGAGTCCTTCATTATTCGCGTCACTCGTGGAGCTAAAGTTGGTATCAAGAGTGCTAAGTTTACCAAGATTAAGGAGAGATCATTTGGTTTGGTGCCAGAGGAAACTAAGCAATATCAATGTTGCAGGGAGAAAAGTTAGCATGGAACAATCTTTTTCACTTTTTCCATGTTAAGTATTAGTGATTAGTATATGTCTAGTTTTTCATAATGCTAGTGAAGATCTTCTTAGGACTATAGTTCTAAGCTACGTTGTTCGGACTCTTCAAAAATGTCACCGAATGCATGTCAGATTCTCTAAAAGTAGTGTATTTTTGGAGAACCTGACACGGGTGCGACATCAAAAGTGAAAGAGTCCGCACAACTTAGGTTCTAGGCTATGTTAGTACC</gDNA_template>
            <first_frame> N  F  K  Y  F  Y  K  D  L  S  R  M  S  H  F  K  D  H  E  S  N  I  M  S  G  R  G  A  F  S  V  A  F  F  K  S  R  A  L  E  V  C  I  F  S  L  S  C  *  N  T  *  T  H  S  N  E  R  N  T  L  T  V  *  Q  M  I  V  L  R  V  R  R  E  D  E  K  R  K  R  M  S  F  P  *  *  N  W  A  T  L  L  R  R  R  C  K  F  S  G  S  F  F  V  L  I  N  V  K  L  I  W  P  *  R  V  F  K  E  L  K  W  T  M  Q  K  S  S  F  L  *  M  S  N  *  T  F  K  R :   R  R  G  S  *  K  M  Y  K  E  V  A  I  A  *  *  R  S  S  K  N  N  K  N  V  D  *  V  L  H  Y  S  R  H  S  W  S  *  S  W  Y  Q  E  C  *  V  Y  Q  D  *  G  E  I  I  W  F  G  A  R  G  N  *  A  I  S  M  L  Q  G  E  K  L  A  W  N  N  L  F  H  F  F  H  V  K  Y  *  *  L  V  Y  V  *  F  F  I  M  L  V  K  I  F  L  G  L  *  F  *  A  T  L  F  G  L  F  K  N  V  T  E  C  M  S  D  S  L  K  V  V  Y  F  W  R  T  *  H  G  C  D  I  K  S  E  R  V  R  T  T  *  V  L  G  Y  V  S  T </first_frame>
            <second_frame>  I  S  S  T  F  T  K  I  C  R  G  *  A  I  S  R  T  T  S  P  I  L  C  Q  E  E  V  H  S  P  *  L  S  S  S  P  E  H  *  R  Y  A  F  F  R  *  V  V  K  I  P  R  L  I  V  T  R  G  I  L  *  L  S  S  R  *  S  F  *  G  *  E  G  R  T  R  R  G  K  G  C  H  F  H  N  E  I  G  R  R  Y  *  G  D  D  A  S  F  L  G  V  S  S  C  *  *  T  *  S  *  F  G  L  K  G  C  S  R  N  S  N  G  Q  C  R  N  R  A  F  Y  E  C  Q  T  R  P  S  K   : E  G  E  E  V  E  R  C  T  K  K  W  Q  L  H  S  E  E  V  P  K  T  T  R  T  S  I  E  S  F  I  I  R  V  T  R  G  A  K  V  G  I  K  S  A  K  F  T  K  I  K  E  R  S  F  G  L  V  P  E  E  T  K  Q  Y  Q  C  C  R  E  K  S  *  H  G  T  I  F  F  T  F  S  M  L  S  I  S  D  *  Y  M  S  S  F  S  *  C  *  *  R  S  S  *  D  Y  S  S  K  L  R  C  S  D  S  S  K  M  S  P  N  A  C  Q  I  L  *  K  *  C  I  F  G  E  P  D  T  G  A  T  S  K  V  K  E  S  A  Q  L  R  F  *  A  M  L  V   </second_frame>
            <third_frame>   F  Q  V  L  L  Q  R  F  V  E  D  E  P  F  Q  G  P  R  V  Q  Y  Y  V  R  K  R  C  I  L  R  S  F  L  Q  V  P  S  I  R  G  M  H  F  F  V  E  L  L  K  Y  L  D  S  *  *  R  E  E  Y  F  D  C  L  A  D  D  R  F  K  G  K  K  G  G  R  E  E  E  K  D  V  I  S  I  M  K  L  G  D  V  I  K  E  T  M  Q  V  F  W  E  F  L  R  A  D  K  R  E  A  N  L  A  L  K  G  V  Q  G  T  Q  M  D  N  A  E  I  E  L  F  M  N  V  K  L  D  L  Q  K  :  K  E  R  K  L  K  D  V  Q  R  S  G  N  C  I  V  K  K  F  Q  K  Q  Q  E  R  R  L  S  P  S  L  F  A  S  L  V  E  L  K  L  V  S  R  V  L  S  L  P  R  L  R  R  D  H  L  V  W  C  Q  R  K  L  S  N  I  N  V  A  G  R  K  V  S  M  E  Q  S  F  S  L  F  P  C  *  V  L  V  I  S  I  C  L  V  F  H  N  A  S  E  D  L  L  R  T  I  V  L  S  Y  V  V  R  T  L  Q  K  C  H  R  M  H  V  R  F  S  K  S  S  V  F  L  E  N  L  T  R  V  R  H  Q  K  *  K  S  P  H  N  L  G  S  R  L  C  *  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59860" stop="60108"/>
                    <exon start="60284" stop="60535"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REEYFDCLADDRFKGKKGGREEEKDVISIMKLGDVIKETMQVFWEFLRADKREANLALKGVQGTQMDNAEIELFMNVKLDLQKKERKLKDVQRSGNCIVKKFQKQQERRLSPSLFASLVELKLVSRVLSLPRLRRDHLVWCQRKLSNINVAGRKVSMEQSFSLFPC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="63814" PGL_stop="66562"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63814" e_stop="63944"/>
            <exon e_start="64125" e_stop="64204"/>
            <exon e_start="65928" e_stop="66037"/>
            <exon e_start="66126" e_stop="66562"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63814" e_stop="63944" e_length="131"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63945" i_stop="64124" i_length="180"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64125" e_stop="64204" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.977">
            <gDNA_intron_boundary i_start="64205" i_stop="65927" i_length="1723"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65928" e_stop="66037" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.986">
            <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="0.979">
            <gDNA_exon_boundary e_start="66126" e_stop="66562" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63814" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63817" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63817" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63817" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63817" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63818" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63819" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63819" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63819" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63820" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63821" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63826" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63827" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63827" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63827" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63830" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63831" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63831" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63832" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63834" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63834" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63856" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63856" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63895" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63907" stop="63944"/>
              <exon start="64125" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64154" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64172" stop="64204"/>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419355" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65931" stop="66037"/>
              <exon start="66126" stop="66468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65938" stop="66037"/>
              <exon start="66126" stop="66451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279171" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65939" stop="66037"/>
              <exon start="66126" stop="66491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65980" stop="66037"/>
              <exon start="66126" stop="66450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66026" stop="66037"/>
              <exon start="66126" stop="66482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66200" stop="66482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTTCAGCCTCTAAAAACCAGAGAGTAGAGTAACAGAGCCGCCGTCAAAAATGGTGCAACGGCTTACTTACCGTAAACGGCATAGCTATGCAACCAAGTCGAACCAACATAGGGTTGTGAAAACCCCAG : GTGGAAAGCTGATTTACCAGACTACGAAGAAGAGGGCTAATGGACCTAAGTGCCCTGTAACTGGAAAGAGAATTCAAGGG : ATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAG : GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTATTCGTTCCAGTTTTGATTCTTAAATCAGTTTATACTTGAATCTGAGTTTGTTTTGATACATTTTCAATCTCTATGAATCAATGTTTTACATCTGTTAATACTG</gDNA_template>
            <first_frame> L  L  Q  P  L  K  T  R  E  *  S  N  R  A  A  V  K  N  G  A  T  A  Y  L  P  *  T  A  *  L  C  N  Q  V  E  P  T  *  G  C  E  N  P  R :   W  K  A  D  L  P  D  Y  E  E  E  G  *  W  T  *  V  P  C  N  W  K  E  N  S  R   : D  S  T  L  E  T  C  *  V  Q  E  I  Q  V  I  *  E  Q  E  D  C  E  P  C  L  W  W  C  V  V  R  Q  C  C  T  *  K  :  D  H  Q  S  L  F  G  *  R  T  K  D  R  E  E  G  F  E  D  P  E  S  Q  G  K  A  S  I  Q  E  L  S  L  E  S  S  M  M  S  *  E  E  F  L  I  L  Q  V  S  R  K  S  *  L  Y  F  D  F  W  S  *  D  L  Y  V  A  G  F  S  L  K  Y  D  I  G  G  L  S  S  V  C  R  N  I  R  S  P  R  Y  L  Y  F  L  V  L  N  I  *  T  C  Y  G  Y  L  Q  L  L  F  N  *  A  I  R  S  S  F  D  S  *  I  S  L  Y  L  N  L  S  L  F  *  Y  I  F  N  L  Y  E  S  M  F  Y  I  C  *  Y   </first_frame>
            <second_frame>  F  F  S  L  *  K  P  E  S  R  V  T  E  P  P  S  K  M  V  Q  R  L  T  Y  R  K  R  H  S  Y  A  T  K  S  N  Q  H  R  V  V  K  T  P   : G  G  K  L  I  Y  Q  T  T  K  K  R  A  N  G  P  K  C  P  V  T  G  K  R  I  Q  G  :  I  P  H  L  R  P  A  E  Y  K  R  S  R  L  S  R  N  R  R  T  V  N  R  A  Y  G  G  V  L  S  G  S  A  V  R  E  R :   I  I  R  A  F  L  V  E  E  Q  K  I  V  K  K  V  L  K  I  Q  K  A  K  E  K  L  A  S  K  S  *  A  L  N  P  R  *  C  R  E  R  S  F  *  Y  C  R  F  L  G  N  H  D  C  I  L  I  F  G  L  E  I  C  M  L  L  V  F  R  *  N  T  I  L  E  V  F  L  Q  F  V  E  I  S  V  L  L  G  I  S  I  F  L  F  *  I  F  K  L  V  M  D  I  C  N  F  Y  S  I  R  L  F  V  P  V  L  I  L  K  S  V  Y  T  *  I  *  V  C  F  D  T  F  S  I  S  M  N  Q  C  F  T  S  V  N  T  </second_frame>
            <third_frame>   S  S  A  S  K  N  Q  R  V  E  *  Q  S  R  R  Q  K  W  C  N  G  L  L  T  V  N  G  I  A  M  Q  P  S  R  T  N  I  G  L  *  K  P  Q  :  V  E  S  *  F  T  R  L  R  R  R  G  L  M  D  L  S  A  L  *  L  E  R  E  F  K  G :   F  H  T  *  D  L  L  S  T  R  D  P  G  Y  L  G  T  G  G  L  *  T  V  L  M  V  V  C  C  P  A  V  L  Y  V  K   : G  S  S  E  P  F  W  L  K  N  K  R  S  *  R  R  F  *  R  S  R  K  P  R  K  S  *  H  P  R  A  K  P  *  I  L  D  D  V  V  R  G  V  S  D  T  A  G  F  *  E  I  M  T  V  F  *  F  L  V  L  R  F  V  C  C  W  F  F  V  K  I  R  Y  W  R  S  F  F  S  L  S  K  Y  P  F  S  *  V  S  L  F  S  C  S  E  Y  L  N  L  L  W  I  F  A  T  S  I  Q  L  G  Y  S  F  Q  F  *  F  L  N  Q  F  I  L  E  S  E  F  V  L  I  H  F  Q  S  L  *  I  N  V  L  H  L  L  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63830" stop="63944"/>
                    <exon start="64125" stop="64204"/>
                    <exon start="65928" stop="66037"/>
                    <exon start="66126" stop="66219"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPESRVTEPPSKMVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRANGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="65927" e_stop="66037"/>
            <exon e_start="66126" e_stop="66491"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65927" e_stop="66037" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.986">
            <gDNA_intron_boundary i_start="66038" i_stop="66125" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="66126" e_stop="66491" e_length="366"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65927" stop="66037"/>
              <exon start="66126" stop="66444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65928" stop="66037"/>
              <exon start="66126" stop="66450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65931" stop="66037"/>
              <exon start="66126" stop="66468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65938" stop="66037"/>
              <exon start="66126" stop="66451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279171" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65939" stop="66037"/>
              <exon start="66126" stop="66491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65980" stop="66037"/>
              <exon start="66126" stop="66450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66026" stop="66037"/>
              <exon start="66126" stop="66482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66200" stop="66482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAG : GATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTATTCGTTCCAGTTTTGATTCTTAAATCAGTTTA</gDNA_template>
            <first_frame> D  S  T  L  E  T  C  *  V  Q  E  I  Q  V  I  *  E  Q  E  D  C  E  P  C  L  W  W  C  V  V  R  Q  C  C  T  *  K  :  D  H  Q  S  L  F  G  *  R  T  K  D  R  E  E  G  F  E  D  P  E  S  Q  G  K  A  S  I  Q  E  L  S  L  E  S  S  M  M  S  *  E  E  F  L  I  L  Q  V  S  R  K  S  *  L  Y  F  D  F  W  S  *  D  L  Y  V  A  G  F  S  L  K  Y  D  I  G  G  L  S  S  V  C  R  N  I  R  S  P  R  Y  L  Y  F  L  V  L  N  I  *  T  C  Y  G  Y  L  Q  L  L  F  N  *  A  I  R  S  S  F  D  S  *  I  S  L </first_frame>
            <second_frame>  I  P  H  L  R  P  A  E  Y  K  R  S  R  L  S  R  N  R  R  T  V  N  R  A  Y  G  G  V  L  S  G  S  A  V  R  E  R :   I  I  R  A  F  L  V  E  E  Q  K  I  V  K  K  V  L  K  I  Q  K  A  K  E  K  L  A  S  K  S  *  A  L  N  P  R  *  C  R  E  R  S  F  *  Y  C  R  F  L  G  N  H  D  C  I  L  I  F  G  L  E  I  C  M  L  L  V  F  R  *  N  T  I  L  E  V  F  L  Q  F  V  E  I  S  V  L  L  G  I  S  I  F  L  F  *  I  F  K  L  V  M  D  I  C  N  F  Y  S  I  R  L  F  V  P  V  L  I  L  K  S  V   </second_frame>
            <third_frame>   F  H  T  *  D  L  L  S  T  R  D  P  G  Y  L  G  T  G  G  L  *  T  V  L  M  V  V  C  C  P  A  V  L  Y  V  K   : G  S  S  E  P  F  W  L  K  N  K  R  S  *  R  R  F  *  R  S  R  K  P  R  K  S  *  H  P  R  A  K  P  *  I  L  D  D  V  V  R  G  V  S  D  T  A  G  F  *  E  I  M  T  V  F  *  F  L  V  L  R  F  V  C  C  W  F  F  V  K  I  R  Y  W  R  S  F  F  S  L  S  K  Y  P  F  S  *  V  S  L  F  S  C  S  E  Y  L  N  L  L  W  I  F  A  T  S  I  Q  L  G  Y  S  F  Q  F  *  F  L  N  Q  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65928" stop="66037"/>
                    <exon start="66126" stop="66219"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="65142" e_stop="65762"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65142" e_stop="65762" e_length="621"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65142" stop="65762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65142" stop="65637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65142" stop="65532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236312" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGTTATCTTTGTGACTCCTGATAACATGATTTAACTATATGACATCTTATTTAACATGCAGTTTTTCAATATAGAGAAATGGATGAAGTTATCCCTCTATTGTGCAAAATATACTCATTTTACTTTATCCTTTATATTTTGGTGCCATCATACCCTTGCCGTTGAGCTCTAGCATAGACAGAGTGCATTCCACTTCCACCTTTGAAATTACTTTGGTATAAAGGTTGAAATTTCGCCTCTATACTTGCTATTGTTTTAAAATACCCTCTATTATACTTCAAGTTGGAACCTAATAGGCTGCAAATCCGAGACAATTTGCTTGCACAAGTGTATGATAACCTCATCAAGCTGTGCCTGATTATCAATGTTATACAAAAAAGTGTATGAGTCCCAAGTATAACAAAGGGTAAAGCGTTTTTGGTCAACTTCCCTTTATTAAATGTATTATGCCTAAATGCATCTCAATTTATTTTTATGTACTTCTACAATATCATCAGTGTAACATTTTCTAATGGTTTGAGGCAGATTACTTCCTCATCAACTAACAGATGTTCTCTGTAGCTATCAGTGCATCTCAAAAAAAAAATTTCATGTACCTAGAATATTATCAGTGTAACAT</gDNA_template>
            <first_frame> *  V  I  F  V  T  P  D  N  M  I  *  L  Y  D  I  L  F  N  M  Q  F  F  N  I  E  K  W  M  K  L  S  L  Y  C  A  K  Y  T  H  F  T  L  S  F  I  F  W  C  H  H  T  L  A  V  E  L  *  H  R  Q  S  A  F  H  F  H  L  *  N  Y  F  G  I  K  V  E  I  S  P  L  Y  L  L  L  F  *  N  T  L  Y  Y  T  S  S  W  N  L  I  G  C  K  S  E  T  I  C  L  H  K  C  M  I  T  S  S  S  C  A  *  L  S  M  L  Y  K  K  V  Y  E  S  Q  V  *  Q  R  V  K  R  F  W  S  T  S  L  Y  *  M  Y  Y  A  *  M  H  L  N  L  F  L  C  T  S  T  I  S  S  V  *  H  F  L  M  V  *  G  R  L  L  P  H  Q  L  T  D  V  L  C  S  Y  Q  C  I  S  K  K  K  F  H  V  P  R  I  L  S  V  *  H </first_frame>
            <second_frame>  R  L  S  L  *  L  L  I  T  *  F  N  Y  M  T  S  Y  L  T  C  S  F  S  I  *  R  N  G  *  S  Y  P  S  I  V  Q  N  I  L  I  L  L  Y  P  L  Y  F  G  A  I  I  P  L  P  L  S  S  S  I  D  R  V  H  S  T  S  T  F  E  I  T  L  V  *  R  L  K  F  R  L  Y  T  C  Y  C  F  K  I  P  S  I  I  L  Q  V  G  T  *  *  A  A  N  P  R  Q  F  A  C  T  S  V  *  *  P  H  Q  A  V  P  D  Y  Q  C  Y  T  K  K  C  M  S  P  K  Y  N  K  G  *  S  V  F  G  Q  L  P  F  I  K  C  I  M  P  K  C  I  S  I  Y  F  Y  V  L  L  Q  Y  H  Q  C  N  I  F  *  W  F  E  A  D  Y  F  L  I  N  *  Q  M  F  S  V  A  I  S  A  S  Q  K  K  N  F  M  Y  L  E  Y  Y  Q  C  N   </second_frame>
            <third_frame>   G  Y  L  C  D  S  *  *  H  D  L  T  I  *  H  L  I  *  H  A  V  F  Q  Y  R  E  M  D  E  V  I  P  L  L  C  K  I  Y  S  F  Y  F  I  L  Y  I  L  V  P  S  Y  P  C  R  *  A  L  A  *  T  E  C  I  P  L  P  P  L  K  L  L  W  Y  K  G  *  N  F  A  S  I  L  A  I  V  L  K  Y  P  L  L  Y  F  K  L  E  P  N  R  L  Q  I  R  D  N  L  L  A  Q  V  Y  D  N  L  I  K  L  C  L  I  I  N  V  I  Q  K  S  V  *  V  P  S  I  T  K  G  K  A  F  L  V  N  F  P  L  L  N  V  L  C  L  N  A  S  Q  F  I  F  M  Y  F  Y  N  I  I  S  V  T  F  S  N  G  L  R  Q  I  T  S  S  S  T  N  R  C  S  L  *  L  S  V  H  L  K  K  K  I  S  C  T  *  N  I  I  S  V  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0145P19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="65807" e_stop="66519"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="65807" e_stop="66519" e_length="713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65807" stop="66519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66200" stop="66482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTCTCTGTAGCTATCAGCAGTTAATATTTTAAACATGAATGCAAATGCCTACTGCTTTTGATTGTATAGTTGTTTTAGGAGTCATCATTTCAATGGCTTAAAGACTTCTCTTTTTGCAGATTCCACACTTGAGACCTGCTGAGTACAAGAGATCCAGGTTATCTAGGAACAGGAGGACTGTGAACCGTGCTTATGGTGGTGTGTTGTCCGGCAGTGCTGTACGTGAAAGGTATAGTTTTGGTCCACTAGAGTGTTCTCAAACCGTTTAAACAAAATTAGTGTTCTTCCAACTCACTAGATGTTTTCTTGTACAACAGGATCATCAGAGCCTTTTTGGTTGAAGAACAAAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAAGCCAAGGAAAAGCTAGCATCCAAGAGCTAAGCCTTGAATCCTCGATGATGTCGTGAGAGGAGTTTCTGATACTGCAGGTTTCTAGGAAATCATGACTGTATTTTGATTTTTGGTCTTGAGATTTGTATGTTGCTGGTTTTTCGTTAAAATACGATATTGGAGGTCTTTCTTCAGTTTGTCGAAATATCCGTTCTCCTAGGTATCTCTATTTTCTTGTTCTGAATATTTAAACTTGTTATGGATATTTGCAACTTCTATTCAATTAGGCTATTCGTTCCAGTTTTGATTCTTAAATCAGTTTATACTTGAATCTGAGTTTGTTTTGATACA</gDNA_template>
            <first_frame> C  S  L  *  L  S  A  V  N  I  L  N  M  N  A  N  A  Y  C  F  *  L  Y  S  C  F  R  S  H  H  F  N  G  L  K  T  S  L  F  A  D  S  T  L  E  T  C  *  V  Q  E  I  Q  V  I  *  E  Q  E  D  C  E  P  C  L  W  W  C  V  V  R  Q  C  C  T  *  K  V  *  F  W  S  T  R  V  F  S  N  R  L  N  K  I  S  V  L  P  T  H  *  M  F  S  C  T  T  G  S  S  E  P  F  W  L  K  N  K  R  S  *  R  R  F  *  R  S  R  K  P  R  K  S  *  H  P  R  A  K  P  *  I  L  D  D  V  V  R  G  V  S  D  T  A  G  F  *  E  I  M  T  V  F  *  F  L  V  L  R  F  V  C  C  W  F  F  V  K  I  R  Y  W  R  S  F  F  S  L  S  K  Y  P  F  S  *  V  S  L  F  S  C  S  E  Y  L  N  L  L  W  I  F  A  T  S  I  Q  L  G  Y  S  F  Q  F  *  F  L  N  Q  F  I  L  E  S  E  F  V  L  I   </first_frame>
            <second_frame>  V  L  C  S  Y  Q  Q  L  I  F  *  T  *  M  Q  M  P  T  A  F  D  C  I  V  V  L  G  V  I  I  S  M  A  *  R  L  L  F  L  Q  I  P  H  L  R  P  A  E  Y  K  R  S  R  L  S  R  N  R  R  T  V  N  R  A  Y  G  G  V  L  S  G  S  A  V  R  E  R  Y  S  F  G  P  L  E  C  S  Q  T  V  *  T  K  L  V  F  F  Q  L  T  R  C  F  L  V  Q  Q  D  H  Q  S  L  F  G  *  R  T  K  D  R  E  E  G  F  E  D  P  E  S  Q  G  K  A  S  I  Q  E  L  S  L  E  S  S  M  M  S  *  E  E  F  L  I  L  Q  V  S  R  K  S  *  L  Y  F  D  F  W  S  *  D  L  Y  V  A  G  F  S  L  K  Y  D  I  G  G  L  S  S  V  C  R  N  I  R  S  P  R  Y  L  Y  F  L  V  L  N  I  *  T  C  Y  G  Y  L  Q  L  L  F  N  *  A  I  R  S  S  F  D  S  *  I  S  L  Y  L  N  L  S  L  F  *  Y  </second_frame>
            <third_frame>   F  S  V  A  I  S  S  *  Y  F  K  H  E  C  K  C  L  L  L  L  I  V  *  L  F  *  E  S  S  F  Q  W  L  K  D  F  S  F  C  R  F  H  T  *  D  L  L  S  T  R  D  P  G  Y  L  G  T  G  G  L  *  T  V  L  M  V  V  C  C  P  A  V  L  Y  V  K  G  I  V  L  V  H  *  S  V  L  K  P  F  K  Q  N  *  C  S  S  N  S  L  D  V  F  L  Y  N  R  I  I  R  A  F  L  V  E  E  Q  K  I  V  K  K  V  L  K  I  Q  K  A  K  E  K  L  A  S  K  S  *  A  L  N  P  R  *  C  R  E  R  S  F  *  Y  C  R  F  L  G  N  H  D  C  I  L  I  F  G  L  E  I  C  M  L  L  V  F  R  *  N  T  I  L  E  V  F  L  Q  F  V  E  I  S  V  L  L  G  I  S  I  F  L  F  *  I  F  K  L  V  M  D  I  C  N  F  Y  S  I  R  L  F  V  P  V  L  I  L  K  S  V  Y  T  *  I  *  V  C  F  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0145P19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="71249" PGL_stop="70181"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71249" e_stop="70903"/>
            <exon e_start="70411" e_stop="70181"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="0.914"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="71249" e_stop="70903" e_length="347"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="70902" i_stop="70412" i_length="491"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="70411" e_stop="70181" e_length="231"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71249" stop="70903"/>
              <exon start="70411" stop="70181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTATAAACTTTTCTTCTTCAACAACAACAACAACAATATTAGGGTTTCATCAATAGTTATAAGTTTTACTTAAACAAGTTTTGTTTTTGTTTAGTAAAAAAAGGTTGTGTAAGGTAGGTAGGTGTATTAGGGTTTGTTCTATTGGTCTTTTAGGGTTTTTTAATGGAAGAAAGAAATGATAAAGAGAAAAATATGGATGAAGTGATGCTTCCAGGGTTTAGGTTTCATCCAACTGATGAAGAATTAGTAGGGTTTTATCTAAGGAGGAAAGTTCAACAAAAACCAATATCTATTGAACTTATCAAGCAACTTGATATCTATAAATATGATCCATGGGATCTACCAA : AGTTGGCAGCAGTGGGAGAAAAAGAATGGTATTTTTATTGTCCAAGGGATAGAAAATATAGAAATAGTGCAAGACCAAATAGAGTAACTGGAGCTGGTTTTTGGAAAGCAACAGGTACTGATAGGCCAATTTATTCATCTGAAGGATCAAAATGTATTGGATTGAAAAAATCACTTGTTTTCTACAAAGGAAGAGCTGCAAAAGGGATTAAAACTGATTGGATGATGCATG</gDNA_template>
            <first_frame> L  I  N  F  S  S  S  T  T  T  T  T  I  L  G  F  H  Q  *  L  *  V  L  L  K  Q  V  L  F  L  F  S  K  K  R  L  C  K  V  G  R  C  I  R  V  C  S  I  G  L  L  G  F  F  N  G  R  K  K  *  *  R  E  K  Y  G  *  S  D  A  S  R  V  *  V  S  S  N  *  *  R  I  S  R  V  L  S  K  E  E  S  S  T  K  T  N  I  Y  *  T  Y  Q  A  T  *  Y  L  *  I  *  S  M  G  S  T  K :   V  G  S  S  G  R  K  R  M  V  F  L  L  S  K  G  *  K  I  *  K  *  C  K  T  K  *  S  N  W  S  W  F  L  E  S  N  R  Y  *  *  A  N  L  F  I  *  R  I  K  M  Y  W  I  E  K  I  T  C  F  L  Q  R  K  S  C  K  R  D  *  N  *  L  D  D  A   </first_frame>
            <second_frame>  L  *  T  F  L  L  Q  Q  Q  Q  Q  Q  Y  *  G  F  I  N  S  Y  K  F  Y  L  N  K  F  C  F  C  L  V  K  K  G  C  V  R  *  V  G  V  L  G  F  V  L  L  V  F  *  G  F  L  M  E  E  R  N  D  K  E  K  N  M  D  E  V  M  L  P  G  F  R  F  H  P  T  D  E  E  L  V  G  F  Y  L  R  R  K  V  Q  Q  K  P  I  S  I  E  L  I  K  Q  L  D  I  Y  K  Y  D  P  W  D  L  P   : K  L  A  A  V  G  E  K  E  W  Y  F  Y  C  P  R  D  R  K  Y  R  N  S  A  R  P  N  R  V  T  G  A  G  F  W  K  A  T  G  T  D  R  P  I  Y  S  S  E  G  S  K  C  I  G  L  K  K  S  L  V  F  Y  K  G  R  A  A  K  G  I  K  T  D  W  M  M  H  </second_frame>
            <third_frame>   Y  K  L  F  F  F  N  N  N  N  N  N  I  R  V  S  S  I  V  I  S  F  T  *  T  S  F  V  F  V  *  *  K  K  V  V  *  G  R  *  V  Y  *  G  L  F  Y  W  S  F  R  V  F  *  W  K  K  E  M  I  K  R  K  I  W  M  K  *  C  F  Q  G  L  G  F  I  Q  L  M  K  N  *  *  G  F  I  *  G  G  K  F  N  K  N  Q  Y  L  L  N  L  S  S  N  L  I  S  I  N  M  I  H  G  I  Y  Q  :  S  W  Q  Q  W  E  K  K  N  G  I  F  I  V  Q  G  I  E  N  I  E  I  V  Q  D  Q  I  E  *  L  E  L  V  F  G  K  Q  Q  V  L  I  G  Q  F  I  H  L  K  D  Q  N  V  L  D  *  K  N  H  L  F  S  T  K  E  E  L  Q  K  G  L  K  L  I  G  *  C  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71095" stop="70903"/>
                    <exon start="70411" stop="70182"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFLMEERNDKEKNMDEVMLPGFRFHPTDEELVGFYLRRKVQQKPISIELIKQLDIYKYDPWDLPKLAAVGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGIKTDWMMH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="96026" PGL_stop="104854"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96026" e_stop="96153"/>
            <exon e_start="97443" e_stop="98014"/>
            <exon e_start="100713" e_stop="102577"/>
            <exon e_start="103213" e_stop="103363"/>
            <exon e_start="103833" e_stop="104854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.754" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.977" e_score="0.999"/>
          <exon-intron don_prob="0.983" acc_prob="0.888" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96026" e_stop="96153" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="0.754" acc_prob="0.982">
            <gDNA_intron_boundary i_start="96154" i_stop="97442" i_length="1289"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97443" e_stop="98014" e_length="572"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.884">
            <gDNA_intron_boundary i_start="98015" i_stop="100712" i_length="2698"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="100713" e_stop="102577" e_length="1865"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.977">
            <gDNA_intron_boundary i_start="102578" i_stop="103212" i_length="635"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="103213" e_stop="103363" e_length="151"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.888">
            <gDNA_intron_boundary i_start="103364" i_stop="103832" i_length="469"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="103833" e_stop="104854" e_length="1022"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96026" stop="96153"/>
              <exon start="97443" stop="98014"/>
              <exon start="100713" stop="102577"/>
              <exon start="103213" stop="103363"/>
              <exon start="103833" stop="104847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96099" stop="96153"/>
              <exon start="97443" stop="98014"/>
              <exon start="100713" stop="100787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96099" stop="96153"/>
              <exon start="97443" stop="97997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100978" stop="101739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102150" stop="102577"/>
              <exon start="103213" stop="103353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102280" stop="102577"/>
              <exon start="103213" stop="103363"/>
              <exon start="103833" stop="104057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102287" stop="102577"/>
              <exon start="103213" stop="103363"/>
              <exon start="103833" stop="104045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102379" stop="102577"/>
              <exon start="103213" stop="103363"/>
              <exon start="103833" stop="104347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102379" stop="102577"/>
              <exon start="103213" stop="103363"/>
              <exon start="103833" stop="104346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102440" stop="102577"/>
              <exon start="103213" stop="103363"/>
              <exon start="103833" stop="104053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102443" stop="102577"/>
              <exon start="103213" stop="103363"/>
              <exon start="103833" stop="104232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102443" stop="102577"/>
              <exon start="103213" stop="103363"/>
              <exon start="103833" stop="103973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102446" stop="102577"/>
              <exon start="103213" stop="103363"/>
              <exon start="103833" stop="104040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102470" stop="102577"/>
              <exon start="103213" stop="103363"/>
              <exon start="103833" stop="103982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102493" stop="102577"/>
              <exon start="103213" stop="103363"/>
              <exon start="103833" stop="104205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102493" stop="102577"/>
              <exon start="103213" stop="103363"/>
              <exon start="103833" stop="104194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102501" stop="102577"/>
              <exon start="103213" stop="103363"/>
              <exon start="103833" stop="104285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103283" stop="103363"/>
              <exon start="103833" stop="104292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103321" stop="103363"/>
              <exon start="103833" stop="104220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103877" stop="104343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103918" stop="104540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104141" stop="104833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104150" stop="104535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104304" stop="104833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104477" stop="104854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATATTCTTTACTTACTTCACCAGGGATTGACTCATCACTCCCCTCAAGTCTTTGTGTGTTGTGATAATAAATTTGGTTGTGCTTCAGTTTCAGTCACTACTGCTGGGTAGTTTTTATTTTGCATA : ACTTCAGGGGGTATTCCAGTTGGTGTTAGCATTTGAAAGTCGAACTGCACTTGGAATTTGGCTACATGGGAAAGACAATTCAGGTTTTCGGATTCCCTTATCTTCTCTCTGCGGAAGTGGTTAAGTCATTCTTAGAGAAATATACAGGATATGGAACTGTATGTGCATTGGAGGTTAAACAGTCCAAAGGAGGATCTAGAGCATTTGCCAAAGTTCAATTTGCCGACAACATAAGTGCTGACAAAATCATCACTTTGGCTAATAACAGGCTGTATTTTGGCTCTTCTTATTTGAAGGCTTGGGAAATGAAAACTGATATTGTCCAACTGCGGGCATATGTGGATCAGATGGATGGCATAACTTTGAATTTCGGATGTCAGATATCAGATGACAAGTTTGCAGTGTTGGGAAGTACAGAAGTTTCAATTCAATTTGGCATTGGATTGAAGAAATTTTTTTTCTTTTTATCTAGTGGTTCAGCTGACTATAAACTTCAGCTTTCATATGAAAATATATGGCAGGTTGTGCTCCATCGTCCATATGGTCAAAATGCTCAGTTTCTCCTCATACAG : TTATTTGGTGCTCCTCGGATCTATAAGAGACTTGAAAACTCCTGTTATAGCTTCTTTAAGGAAACTCCTGATGATCAGTGGGTGAGGACAACAGATTTCCCTCCATCTTGGATAGGGCTATCTTCTAGCTTATGTTTGCAGTTCCGTAGGGGTGTTCGTCTTCCAAATTTCGAGGAAAGTTTTTTCCACTATGCAGAACGTGAAAACAATATTACTTTACAGACTGGTTTCACCTTTTTCGTCTCTCAAAAATCGGCTCTGGTTCCCAATGTCCAGCCTCCGGAAGGAATTTCAATTCCCTACAAGATTTTGTTCAAAATTAGTTCTTTGGTACAGCATGGATGCATACCTGGGCCAGCATTAAATGTCTACTTTTTCCGATTAGTTGATCCTCGAAGGAGAAATGTGGCATGCATTGAGCATGCCTTAGAGAAACTGTACTATATAAAGGAGTGCTGTTATGATCCGGTGAGGTGGCTCACTGAGCAGTATGATGGGTATCTCAAGGGTAGACAACCTCCAAAATCTCCGTCCATCACTTTAGATGATGGGTTGGTGTATGTAAGAAGGGTCCTAGTAACACCATGCAAAGTTTATTTTTGTGGTCCAGAGGTTAATGTTTCCAATCGGGTTCTCCGCAATTATTCTGAAGACATAGATAACTTTCTTCGTGTTTCTTTTGTTGATGAGGAGTGGGAGAAACTGTATTCTACAGACTTATTACCAAAAGCAAGTACTGGAAGTGGTGTCAGGACAAACATCTATGAGAGGATCTTATCAACTCTGCGGAAAGGCTTTGTAATTGGTGATAAAAAATTTGAATTTCTTGCATTTTCATCGAGCCAGTTGCGGGATAATTCAGTGTGGATGTTTGCATCAAGACCTGGCCTTACTGCAAATGATATAAGAGCTTGGATGGGTGATTTTTCGCAGATCAAGAATGTCGCAAAATATGCTGCCAGACTTGGTCAATCTTTTGGTTCCTCCAGAGAGACTTTGAGTGTTCTTAGGCATGAGATTGAAGTTATTCCCGATGTAAAGGTTCATGGAACCAGCTATGTCTTTTCTGATGGAATTGGTAAAATATCTGGTGACTTTGCTCATAGAGTTGCCTCAAAATGTGGCCTTCAATATACCCCATCTGCTTTCCAGATTCGTTATGGTGGATATAAAGGTGTTGTGGGTGTTGATCCGGATTCATCAATGAAGTTGTCTTTGAGAAAGAGCATGTCGAAATATGAATCAGACAACATAAAGTTAGATGTCCTTGGATGGAGCAAATATCAGCCTTGTTATCTTAATCGTCAACTGATTACTCTCTTGTCTACACTTGGAGTGAAAGATGAAGTTCTCGAACAGAAGCAAAAGGAAGCTGTAGATCAGCTTGATGCTATCTTGCATGATTCTTTGAAGGCACAGGAGGCTTTGGAATTGATGTCTCCTGGAGAGAACACTAATATTCTCAAGGCAATGCTAAACTGTGGTTATAAGCCTGATGCTGAGCCCTTTCTTTCAATGATGTTGCAAACCTTCCGCGCATCCAAGTTGCTCGATTTGCGGACTAGATCAAGAATATTTATTCCAAATGGAAGAACAATGATGGGATGTTTGGATGAATCCAGAACCTTGGAATATGGTCAGGTGTTTGTTCAGTTTACTGGTGCTGGACATGGAGAGTTTTCTGACGATTTACATCCATTTAATAACAGCAGATCCACCAACAGTAATTTCATTCTGAAGGGAAATGTGGTTGTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAAGGCTGTAAATGTTCGAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCTCAGAAAGGAAAAAG : ACCTCATCCGAATGAATGTTCTGGGAGTGATTTGGATGGGGATATCTACTTTGTTTGCTGGGATCAAGACATGATCCCGCCAAGGCAAGTCCAGCCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGACCATGATGTCACAATTGAG : GAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGGACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAACAGAGGCTGAAATACTTAGTGGTGGCATTATGAAGGCATCAAAAACTTTTGACCGCAGAAAAGATGCTGAGGCCATTAGTGTTGCTGTGAGGGCCTTGAGGAAGGAGGCAAGAGCCTGGTTCAAGAGGCGTAATGATATAGATGACATGTTACCAAAGGCTTCGGCTTGGTACCACGTTACATATCATCCTACATATTGGGGTTGCTACAATCAGGGGTTGAAAAGAGCTCATTTCATTAGCTTTCCCTGGTGTGTTTATGACCAGCTAATCCAGATTAAGAAGGACAAAGCACGTAACAGGCCAGTTCTCAACTTGTCATCTCTCAGGGCTCAACTGAGTCACAGATTAGTGTTGAAATGAGATTCCAGTCGAGCGTTAAGCTGATATATATATAATGTAATAGGGTGTGATCATAAGAAAACTGTTATGCATTGTTGACTACCTTTTGTCTTTAAAACTGCATGAAGCTGCAACATATATGCAGTACTCTAAGAAACAGATGTACAGCTAAGTACTAATATGTATGTGATTTGAGTTTCATCTTTCTTCTAAACATGGTT</gDNA_template>
            <first_frame> E  I  F  F  T  Y  F  T  R  D  *  L  I  T  P  L  K  S  L  C  V  V  I  I  N  L  V  V  L  Q  F  Q  S  L  L  L  G  S  F  Y  F  A  * :   L  Q  G  V  F  Q  L  V  L  A  F  E  S  R  T  A  L  G  I  W  L  H  G  K  D  N  S  G  F  R  I  P  L  S  S  L  C  G  S  G  *  V  I  L  R  E  I  Y  R  I  W  N  C  M  C  I  G  G  *  T  V  Q  R  R  I  *  S  I  C  Q  S  S  I  C  R  Q  H  K  C  *  Q  N  H  H  F  G  *  *  Q  A  V  F  W  L  F  L  F  E  G  L  G  N  E  N  *  Y  C  P  T  A  G  I  C  G  S  D  G  W  H  N  F  E  F  R  M  S  D  I  R  *  Q  V  C  S  V  G  K  Y  R  S  F  N  S  I  W  H  W  I  E  E  I  F  F  L  F  I  *  W  F  S  *  L  *  T  S  A  F  I  *  K  Y  M  A  G  C  A  P  S  S  I  W  S  K  C  S  V  S  P  H  T   : V  I  W  C  S  S  D  L  *  E  T  *  K  L  L  L  *  L  L  *  G  N  S  *  *  S  V  G  E  D  N  R  F  P  S  I  L  D  R  A  I  F  *  L  M  F  A  V  P  *  G  C  S  S  S  K  F  R  G  K  F  F  P  L  C  R  T  *  K  Q  Y  Y  F  T  D  W  F  H  L  F  R  L  S  K  I  G  S  G  S  Q  C  P  A  S  G  R  N  F  N  S  L  Q  D  F  V  Q  N  *  F  F  G  T  A  W  M  H  T  W  A  S  I  K  C  L  L  F  P  I  S  *  S  S  K  E  K  C  G  M  H  *  A  C  L  R  E  T  V  L  Y  K  G  V  L  L  *  S  G  E  V  A  H  *  A  V  *  W  V  S  Q  G  *  T  T  S  K  I  S  V  H  H  F  R  *  W  V  G  V  C  K  K  G  P  S  N  T  M  Q  S  L  F  L  W  S  R  G  *  C  F  Q  S  G  S  P  Q  L  F  *  R  H  R  *  L  S  S  C  F  F  C  *  *  G  V  G  E  T  V  F  Y  R  L  I  T  K  S  K  Y  W  K  W  C  Q  D  K  H  L  *  E  D  L  I  N  S  A  E  R  L  C  N  W  *  *  K  I  *  I  S  C  I  F  I  E  P  V  A  G  *  F  S  V  D  V  C  I  K  T  W  P  Y  C  K  *  Y  K  S  L  D  G  *  F  F  A  D  Q  E  C  R  K  I  C  C  Q  T  W  S  I  F  W  F  L  Q  R  D  F  E  C  S  *  A  *  D  *  S  Y  S  R  C  K  G  S  W  N  Q  L  C  L  F  *  W  N  W  *  N  I  W  *  L  C  S  *  S  C  L  K  M  W  P  S  I  Y  P  I  C  F  P  D  S  L  W  W  I  *  R  C  C  G  C  *  S  G  F  I  N  E  V  V  F  E  K  E  H  V  E  I  *  I  R  Q  H  K  V  R  C  P  W  M  E  Q  I  S  A  L  L  S  *  S  S  T  D  Y  S  L  V  Y  T  W  S  E  R  *  S  S  R  T  E  A  K  G  S  C  R  S  A  *  C  Y  L  A  *  F  F  E  G  T  G  G  F  G  I  D  V  S  W  R  E  H  *  Y  S  Q  G  N  A  K  L  W  L  *  A  *  C  *  A  L  S  F  N  D  V  A  N  L  P  R  I  Q  V  A  R  F  A  D  *  I  K  N  I  Y  S  K  W  K  N  N  D  G  M  F  G  *  I  Q  N  L  G  I  W  S  G  V  C  S  V  Y  W  C  W  T  W  R  V  F  *  R  F  T  S  I  *  *  Q  Q  I  H  Q  Q  *  F  H  S  E  G  K  C  G  C  C  K  K  S  M  L  A  S  W  *  Y  S  C  F  K  G  C  K  C  S  S  A  A  P  H  G  R  L  C  C  I  P  S  E  R  K  K  :  T  S  S  E  *  M  F  W  E  *  F  G  W  G  Y  L  L  C  L  L  G  S  R  H  D  P  A  K  A  S  P  A  D  G  I  S  S  S  T  Q  H  T  V  G  P  *  C  H  N  *   : G  S  *  R  V  L  H  Q  L  Y  C  E  *  Q  F  G  N  H  S  K  C  P  C  R  I  C  R  Q  R  T  *  Y  G  H  E  *  S  M  Q  K  T  C  *  A  L  F  N  C  S  G  L  S  K  D  W  C  S  R  *  N  T  I  S  V  A  P  *  R  I  P  R  L  H  G  *  A  G  Q  D  Q  L  Y  L  R  K  S  Y  W  K  A  F  Q  E  S  E  G  Q  S  T  S  G  *  L  Y  R  D  L  H  K  R  C  C  K  E  I  I  *  C  *  Y  G  S  *  W  I  *  R  L  H  *  R  S  F  *  L  Q  N  *  I  *  Q  Q  A  G  *  F  N  G  L  L  W  H  K  N  R  G  *  N  T  *  W  W  H  Y  E  G  I  K  N  F  *  P  Q  K  R  C  *  G  H  *  C  C  C  E  G  L  E  E  G  G  K  S  L  V  Q  E  A  *  *  Y  R  *  H  V  T  K  G  F  G  L  V  P  R  Y  I  S  S  Y  I  L  G  L  L  Q  S  G  V  E  K  S  S  F  H  *  L  S  L  V  C  L  *  P  A  N  P  D  *  E  G  Q  S  T  *  Q  A  S  S  Q  L  V  I  S  Q  G  S  T  E  S  Q  I  S  V  E  M  R  F  Q  S  S  V  K  L  I  Y  I  *  C  N  R  V  *  S  *  E  N  C  Y  A  L  L  T  T  F  C  L  *  N  C  M  K  L  Q  H  I  C  S  T  L  R  N  R  C  T  A  K  Y  *  Y  V  C  D  L  S  F  I  F  L  L  N  M  V </first_frame>
            <second_frame>  K  Y  S  L  L  T  S  P  G  I  D  S  S  L  P  S  S  L  C  V  L  *  *  *  I  W  L  C  F  S  F  S  H  Y  C  W  V  V  F  I  L  H   : N  F  R  G  Y  S  S  W  C  *  H  L  K  V  E  L  H  L  E  F  G  Y  M  G  K  T  I  Q  V  F  G  F  P  Y  L  L  S  A  E  V  V  K  S  F  L  E  K  Y  T  G  Y  G  T  V  C  A  L  E  V  K  Q  S  K  G  G  S  R  A  F  A  K  V  Q  F  A  D  N  I  S  A  D  K  I  I  T  L  A  N  N  R  L  Y  F  G  S  S  Y  L  K  A  W  E  M  K  T  D  I  V  Q  L  R  A  Y  V  D  Q  M  D  G  I  T  L  N  F  G  C  Q  I  S  D  D  K  F  A  V  L  G  S  T  E  V  S  I  Q  F  G  I  G  L  K  K  F  F  F  F  L  S  S  G  S  A  D  Y  K  L  Q  L  S  Y  E  N  I  W  Q  V  V  L  H  R  P  Y  G  Q  N  A  Q  F  L  L  I  Q  :  L  F  G  A  P  R  I  Y  K  R  L  E  N  S  C  Y  S  F  F  K  E  T  P  D  D  Q  W  V  R  T  T  D  F  P  P  S  W  I  G  L  S  S  S  L  C  L  Q  F  R  R  G  V  R  L  P  N  F  E  E  S  F  F  H  Y  A  E  R  E  N  N  I  T  L  Q  T  G  F  T  F  F  V  S  Q  K  S  A  L  V  P  N  V  Q  P  P  E  G  I  S  I  P  Y  K  I  L  F  K  I  S  S  L  V  Q  H  G  C  I  P  G  P  A  L  N  V  Y  F  F  R  L  V  D  P  R  R  R  N  V  A  C  I  E  H  A  L  E  K  L  Y  Y  I  K  E  C  C  Y  D  P  V  R  W  L  T  E  Q  Y  D  G  Y  L  K  G  R  Q  P  P  K  S  P  S  I  T  L  D  D  G  L  V  Y  V  R  R  V  L  V  T  P  C  K  V  Y  F  C  G  P  E  V  N  V  S  N  R  V  L  R  N  Y  S  E  D  I  D  N  F  L  R  V  S  F  V  D  E  E  W  E  K  L  Y  S  T  D  L  L  P  K  A  S  T  G  S  G  V  R  T  N  I  Y  E  R  I  L  S  T  L  R  K  G  F  V  I  G  D  K  K  F  E  F  L  A  F  S  S  S  Q  L  R  D  N  S  V  W  M  F  A  S  R  P  G  L  T  A  N  D  I  R  A  W  M  G  D  F  S  Q  I  K  N  V  A  K  Y  A  A  R  L  G  Q  S  F  G  S  S  R  E  T  L  S  V  L  R  H  E  I  E  V  I  P  D  V  K  V  H  G  T  S  Y  V  F  S  D  G  I  G  K  I  S  G  D  F  A  H  R  V  A  S  K  C  G  L  Q  Y  T  P  S  A  F  Q  I  R  Y  G  G  Y  K  G  V  V  G  V  D  P  D  S  S  M  K  L  S  L  R  K  S  M  S  K  Y  E  S  D  N  I  K  L  D  V  L  G  W  S  K  Y  Q  P  C  Y  L  N  R  Q  L  I  T  L  L  S  T  L  G  V  K  D  E  V  L  E  Q  K  Q  K  E  A  V  D  Q  L  D  A  I  L  H  D  S  L  K  A  Q  E  A  L  E  L  M  S  P  G  E  N  T  N  I  L  K  A  M  L  N  C  G  Y  K  P  D  A  E  P  F  L  S  M  M  L  Q  T  F  R  A  S  K  L  L  D  L  R  T  R  S  R  I  F  I  P  N  G  R  T  M  M  G  C  L  D  E  S  R  T  L  E  Y  G  Q  V  F  V  Q  F  T  G  A  G  H  G  E  F  S  D  D  L  H  P  F  N  N  S  R  S  T  N  S  N  F  I  L  K  G  N  V  V  V  A  K  N  P  C  L  H  P  G  D  I  R  V  L  K  A  V  N  V  R  A  L  H  H  M  V  D  C  V  V  F  P  Q  K  G  K  R :   P  H  P  N  E  C  S  G  S  D  L  D  G  D  I  Y  F  V  C  W  D  Q  D  M  I  P  P  R  Q  V  Q  P  M  E  Y  P  P  A  P  S  I  Q  L  D  H  D  V  T  I  E  :  E  V  E  E  Y  F  T  N  Y  I  V  N  D  S  L  G  I  I  A  N  A  H  V  V  F  A  D  R  E  P  D  M  A  M  S  D  P  C  K  K  L  A  E  L  F  S  I  A  V  D  F  P  K  T  G  V  P  A  E  I  P  S  Q  L  R  P  K  E  Y  P  D  F  M  D  K  P  D  K  T  S  Y  I  S  E  R  V  I  G  K  L  F  R  K  V  K  D  K  A  P  Q  A  S  S  I  A  T  F  T  R  D  V  A  R  R  S  Y  D  A  D  M  E  V  D  G  F  E  D  Y  I  D  E  A  F  D  Y  K  T  E  Y  D  N  K  L  G  N  L  M  D  Y  Y  G  I  K  T  E  A  E  I  L  S  G  G  I  M  K  A  S  K  T  F  D  R  R  K  D  A  E  A  I  S  V  A  V  R  A  L  R  K  E  A  R  A  W  F  K  R  R  N  D  I  D  D  M  L  P  K  A  S  A  W  Y  H  V  T  Y  H  P  T  Y  W  G  C  Y  N  Q  G  L  K  R  A  H  F  I  S  F  P  W  C  V  Y  D  Q  L  I  Q  I  K  K  D  K  A  R  N  R  P  V  L  N  L  S  S  L  R  A  Q  L  S  H  R  L  V  L  K  *  D  S  S  R  A  L  S  *  Y  I  Y  N  V  I  G  C  D  H  K  K  T  V  M  H  C  *  L  P  F  V  F  K  T  A  *  S  C  N  I  Y  A  V  L  *  E  T  D  V  Q  L  S  T  N  M  Y  V  I  *  V  S  S  F  F  *  T  W   </second_frame>
            <third_frame>   N  I  L  Y  L  L  H  Q  G  L  T  H  H  S  P  Q  V  F  V  C  C  D  N  K  F  G  C  A  S  V  S  V  T  T  A  G  *  F  L  F  C  I  :  T  S  G  G  I  P  V  G  V  S  I  *  K  S  N  C  T  W  N  L  A  T  W  E  R  Q  F  R  F  S  D  S  L  I  F  S  L  R  K  W  L  S  H  S  *  R  N  I  Q  D  M  E  L  Y  V  H  W  R  L  N  S  P  K  E  D  L  E  H  L  P  K  F  N  L  P  T  T  *  V  L  T  K  S  S  L  W  L  I  T  G  C  I  L  A  L  L  I  *  R  L  G  K  *  K  L  I  L  S  N  C  G  H  M  W  I  R  W  M  A  *  L  *  I  S  D  V  R  Y  Q  M  T  S  L  Q  C  W  E  V  Q  K  F  Q  F  N  L  A  L  D  *  R  N  F  F  S  F  Y  L  V  V  Q  L  T  I  N  F  S  F  H  M  K  I  Y  G  R  L  C  S  I  V  H  M  V  K  M  L  S  F  S  S  Y  S :   Y  L  V  L  L  G  S  I  R  D  L  K  T  P  V  I  A  S  L  R  K  L  L  M  I  S  G  *  G  Q  Q  I  S  L  H  L  G  *  G  Y  L  L  A  Y  V  C  S  S  V  G  V  F  V  F  Q  I  S  R  K  V  F  S  T  M  Q  N  V  K  T  I  L  L  Y  R  L  V  S  P  F  S  S  L  K  N  R  L  W  F  P  M  S  S  L  R  K  E  F  Q  F  P  T  R  F  C  S  K  L  V  L  W  Y  S  M  D  A  Y  L  G  Q  H  *  M  S  T  F  S  D  *  L  I  L  E  G  E  M  W  H  A  L  S  M  P  *  R  N  C  T  I  *  R  S  A  V  M  I  R  *  G  G  S  L  S  S  M  M  G  I  S  R  V  D  N  L  Q  N  L  R  P  S  L  *  M  M  G  W  C  M  *  E  G  S  *  *  H  H  A  K  F  I  F  V  V  Q  R  L  M  F  P  I  G  F  S  A  I  I  L  K  T  *  I  T  F  F  V  F  L  L  L  M  R  S  G  R  N  C  I  L  Q  T  Y  Y  Q  K  Q  V  L  E  V  V  S  G  Q  T  S  M  R  G  S  Y  Q  L  C  G  K  A  L  *  L  V  I  K  N  L  N  F  L  H  F  H  R  A  S  C  G  I  I  Q  C  G  C  L  H  Q  D  L  A  L  L  Q  M  I  *  E  L  G  W  V  I  F  R  R  S  R  M  S  Q  N  M  L  P  D  L  V  N  L  L  V  P  P  E  R  L  *  V  F  L  G  M  R  L  K  L  F  P  M  *  R  F  M  E  P  A  M  S  F  L  M  E  L  V  K  Y  L  V  T  L  L  I  E  L  P  Q  N  V  A  F  N  I  P  H  L  L  S  R  F  V  M  V  D  I  K  V  L  W  V  L  I  R  I  H  Q  *  S  C  L  *  E  R  A  C  R  N  M  N  Q  T  T  *  S  *  M  S  L  D  G  A  N  I  S  L  V  I  L  I  V  N  *  L  L  S  C  L  H  L  E  *  K  M  K  F  S  N  R  S  K  R  K  L  *  I  S  L  M  L  S  C  M  I  L  *  R  H  R  R  L  W  N  *  C  L  L  E  R  T  L  I  F  S  R  Q  C  *  T  V  V  I  S  L  M  L  S  P  F  F  Q  *  C  C  K  P  S  A  H  P  S  C  S  I  C  G  L  D  Q  E  Y  L  F  Q  M  E  E  Q  *  W  D  V  W  M  N  P  E  P  W  N  M  V  R  C  L  F  S  L  L  V  L  D  M  E  S  F  L  T  I  Y  I  H  L  I  T  A  D  P  P  T  V  I  S  F  *  R  E  M  W  L  L  Q  K  I  H  A  C  I  L  V  I  F  V  F  *  R  L  *  M  F  E  R  C  T  T  W  *  I  V  L  Y  S  L  R  K  E  K   : D  L  I  R  M  N  V  L  G  V  I  W  M  G  I  S  T  L  F  A  G  I  K  T  *  S  R  Q  G  K  S  S  R  W  N  I  L  Q  H  P  A  Y  S  W  T  M  M  S  Q  L  R :   K  L  K  S  T  S  P  T  I  L  *  M  T  V  W  E  S  *  Q  M  P  M  S  Y  L  Q  T  E  N  L  I  W  P  *  V  I  H  A  K  N  L  L  S  S  F  Q  L  Q  W  T  F  Q  R  L  V  F  P  L  K  Y  H  L  S  C  A  L  K  N  T  Q  T  S  W  I  S  R  T  R  P  A  I  S  Q  K  E  L  L  E  S  F  S  G  K  *  R  T  K  H  L  R  L  A  L  S  R  P  S  Q  E  M  L  Q  G  D  H  M  M  L  I  W  K  L  M  D  L  K  I  T  L  T  K  L  L  T  T  K  L  N  M  T  T  S  W  V  I  *  W  T  T  M  A  *  K  Q  R  L  K  Y  L  V  V  A  L  *  R  H  Q  K  L  L  T  A  E  K  M  L  R  P  L  V  L  L  *  G  P  *  G  R  R  Q  E  P  G  S  R  G  V  M  I  *  M  T  C  Y  Q  R  L  R  L  G  T  T  L  H  I  I  L  H  I  G  V  A  T  I  R  G  *  K  E  L  I  S  L  A  F  P  G  V  F  M  T  S  *  S  R  L  R  R  T  K  H  V  T  G  Q  F  S  T  C  H  L  S  G  L  N  *  V  T  D  *  C  *  N  E  I  P  V  E  R  *  A  D  I  Y  I  M  *  *  G  V  I  I  R  K  L  L  C  I  V  D  Y  L  L  S  L  K  L  H  E  A  A  T  Y  M  Q  Y  S  K  K  Q  M  Y  S  *  V  L  I  C  M  *  F  E  F  H  L  S  S  K  H  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97472" stop="98014"/>
                    <exon start="100713" stop="102577"/>
                    <exon start="103213" stop="103363"/>
                    <exon start="103833" stop="104654"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>3378</number_coding_nucleotides>
                  <number_encoded_amino_acids>1126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLKVELHLEFGYMGKTIQVFGFPYLLSAEVVKSFLEKYTGYGTVCALEVKQSKGGSRAFAKVQFADNISADKIITLANNRLYFGSSYLKAWEMKTDIVQLRAYVDQMDGITLNFGCQISDDKFAVLGSTEVSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENSCYSFFKETPDDQWVRTTDFPPSWIGLSSSLCLQFRRGVRLPNFEESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPRRRNVACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGSGVRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVHGTSYVFSDGIGKISGDFAHRVASKCGLQYTPSAFQIRYGGYKGVVGVDPDSSMKLSLRKSMSKYESDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLHPFNNSRSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAPQASSIATFTRDVARRSYDADMEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAISVAVRALRKEARAWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRAHFISFPWCVYDQLIQIKKDKARNRPVLNLSSLRAQLSHRLVLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="103808" e_stop="104854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="103808" e_stop="104854" e_length="1047"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103808" stop="104325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103877" stop="104343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103918" stop="104540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104141" stop="104833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104150" stop="104535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104304" stop="104833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104477" stop="104854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTTCACCTGTCTACCTACTGCAGGAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCAAAGACTGGTGTTCCCGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAAGCCGGACAAGACCAGCTATATCTCAGAAAGAGTTATTGGAAAGCTTTTCAGGAAAGTGAAGGACAAAGCACCTCAGGCTAGCTCTATCGCGACCTTCACAAGAGATGTTGCAAGGAGATCATATGATGCTGATATGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAACAGAGGCTGAAATACTTAGTGGTGGCATTATGAAGGCATCAAAAACTTTTGACCGCAGAAAAGATGCTGAGGCCATTAGTGTTGCTGTGAGGGCCTTGAGGAAGGAGGCAAGAGCCTGGTTCAAGAGGCGTAATGATATAGATGACATGTTACCAAAGGCTTCGGCTTGGTACCACGTTACATATCATCCTACATATTGGGGTTGCTACAATCAGGGGTTGAAAAGAGCTCATTTCATTAGCTTTCCCTGGTGTGTTTATGACCAGCTAATCCAGATTAAGAAGGACAAAGCACGTAACAGGCCAGTTCTCAACTTGTCATCTCTCAGGGCTCAACTGAGTCACAGATTAGTGTTGAAATGAGATTCCAGTCGAGCGTTAAGCTGATATATATATAATGTAATAGGGTGTGATCATAAGAAAACTGTTATGCATTGTTGACTACCTTTTGTCTTTAAAACTGCATGAAGCTGCAACATATATGCAGTACTCTAAGAAACAGATGTACAGCTAAGTACTAATATGTATGTGATTTGAGTTTCATCTTTCTTCTAAACATGGTT</gDNA_template>
            <first_frame> P  F  T  C  L  P  T  A  G  S  *  R  V  L  H  Q  L  Y  C  E  *  Q  F  G  N  H  S  K  C  P  C  R  I  C  R  Q  R  T  *  Y  G  H  E  *  S  M  Q  K  T  C  *  A  L  F  N  C  S  G  L  S  K  D  W  C  S  R  *  N  T  I  S  V  A  P  *  R  I  P  R  L  H  G  *  A  G  Q  D  Q  L  Y  L  R  K  S  Y  W  K  A  F  Q  E  S  E  G  Q  S  T  S  G  *  L  Y  R  D  L  H  K  R  C  C  K  E  I  I  *  C  *  Y  G  S  *  W  I  *  R  L  H  *  R  S  F  *  L  Q  N  *  I  *  Q  Q  A  G  *  F  N  G  L  L  W  H  K  N  R  G  *  N  T  *  W  W  H  Y  E  G  I  K  N  F  *  P  Q  K  R  C  *  G  H  *  C  C  C  E  G  L  E  E  G  G  K  S  L  V  Q  E  A  *  *  Y  R  *  H  V  T  K  G  F  G  L  V  P  R  Y  I  S  S  Y  I  L  G  L  L  Q  S  G  V  E  K  S  S  F  H  *  L  S  L  V  C  L  *  P  A  N  P  D  *  E  G  Q  S  T  *  Q  A  S  S  Q  L  V  I  S  Q  G  S  T  E  S  Q  I  S  V  E  M  R  F  Q  S  S  V  K  L  I  Y  I  *  C  N  R  V  *  S  *  E  N  C  Y  A  L  L  T  T  F  C  L  *  N  C  M  K  L  Q  H  I  C  S  T  L  R  N  R  C  T  A  K  Y  *  Y  V  C  D  L  S  F  I  F  L  L  N  M  V </first_frame>
            <second_frame>  L  S  P  V  Y  L  L  Q  E  V  E  E  Y  F  T  N  Y  I  V  N  D  S  L  G  I  I  A  N  A  H  V  V  F  A  D  R  E  P  D  M  A  M  S  D  P  C  K  K  L  A  E  L  F  S  I  A  V  D  F  P  K  T  G  V  P  A  E  I  P  S  Q  L  R  P  K  E  Y  P  D  F  M  D  K  P  D  K  T  S  Y  I  S  E  R  V  I  G  K  L  F  R  K  V  K  D  K  A  P  Q  A  S  S  I  A  T  F  T  R  D  V  A  R  R  S  Y  D  A  D  M  E  V  D  G  F  E  D  Y  I  D  E  A  F  D  Y  K  T  E  Y  D  N  K  L  G  N  L  M  D  Y  Y  G  I  K  T  E  A  E  I  L  S  G  G  I  M  K  A  S  K  T  F  D  R  R  K  D  A  E  A  I  S  V  A  V  R  A  L  R  K  E  A  R  A  W  F  K  R  R  N  D  I  D  D  M  L  P  K  A  S  A  W  Y  H  V  T  Y  H  P  T  Y  W  G  C  Y  N  Q  G  L  K  R  A  H  F  I  S  F  P  W  C  V  Y  D  Q  L  I  Q  I  K  K  D  K  A  R  N  R  P  V  L  N  L  S  S  L  R  A  Q  L  S  H  R  L  V  L  K  *  D  S  S  R  A  L  S  *  Y  I  Y  N  V  I  G  C  D  H  K  K  T  V  M  H  C  *  L  P  F  V  F  K  T  A  *  S  C  N  I  Y  A  V  L  *  E  T  D  V  Q  L  S  T  N  M  Y  V  I  *  V  S  S  F  F  *  T  W   </second_frame>
            <third_frame>   F  H  L  S  T  Y  C  R  K  L  K  S  T  S  P  T  I  L  *  M  T  V  W  E  S  *  Q  M  P  M  S  Y  L  Q  T  E  N  L  I  W  P  *  V  I  H  A  K  N  L  L  S  S  F  Q  L  Q  W  T  F  Q  R  L  V  F  P  L  K  Y  H  L  S  C  A  L  K  N  T  Q  T  S  W  I  S  R  T  R  P  A  I  S  Q  K  E  L  L  E  S  F  S  G  K  *  R  T  K  H  L  R  L  A  L  S  R  P  S  Q  E  M  L  Q  G  D  H  M  M  L  I  W  K  L  M  D  L  K  I  T  L  T  K  L  L  T  T  K  L  N  M  T  T  S  W  V  I  *  W  T  T  M  A  *  K  Q  R  L  K  Y  L  V  V  A  L  *  R  H  Q  K  L  L  T  A  E  K  M  L  R  P  L  V  L  L  *  G  P  *  G  R  R  Q  E  P  G  S  R  G  V  M  I  *  M  T  C  Y  Q  R  L  R  L  G  T  T  L  H  I  I  L  H  I  G  V  A  T  I  R  G  *  K  E  L  I  S  L  A  F  P  G  V  F  M  T  S  *  S  R  L  R  R  T  K  H  V  T  G  Q  F  S  T  C  H  L  S  G  L  N  *  V  T  D  *  C  *  N  E  I  P  V  E  R  *  A  D  I  Y  I  M  *  *  G  V  I  I  R  K  L  L  C  I  V  D  Y  L  L  S  L  K  L  H  E  A  A  T  Y  M  Q  Y  S  K  K  Q  M  Y  S  *  V  L  I  C  M  *  F  E  F  H  L  S  S  K  H  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103809" stop="104654"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSPVYLLQEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAPQASSIATFTRDVARRSYDADMEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAISVAVRALRKEARAWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRAHFISFPWCVYDQLIQIKKDKARNRPVLNLSSLRAQLSHRLVLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="104856" PGL_stop="104413"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104856" e_stop="104413"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="104856" e_stop="104413" e_length="444"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104856" stop="104413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411293" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAACCATGTTTAGAAGAAAGATGAAACTCAAATCACATACATATTAGTACTTAGCTGTACATCTGTTTCTTAGAGTACTGCATATATGTTGCAGCTTCATGCAGTTTTAAAGACAAAAGGTAGTCAACAATGCATAACAGTTTTCTTATGATCACACCCTATTACATTATATATATATCAGCTTAACGCTCGACTGGAATCTCATTTCAACACTAATCTGTGACTCAGTTGAGCCCTGAGAGATGACAAGTTGAGAACTGGCCTGTTACGTGCTTTGTCCTTCTTAATCTGGATTAGCTGGTCATAAACACACCAGGGAAAGCTAATGAAATGAGCTCTTTTCAACCCCTGATTGTAGCAACCCCAATATGTAGGATGATATGTAACGTGGTACCAAGCCGAAGCCTTTGGTAACATGTCATCTATATCATTACGCCTCTTGA</gDNA_template>
            <first_frame> *  T  M  F  R  R  K  M  K  L  K  S  H  T  Y  *  Y  L  A  V  H  L  F  L  R  V  L  H  I  C  C  S  F  M  Q  F  *  R  Q  K  V  V  N  N  A  *  Q  F  S  Y  D  H  T  L  L  H  Y  I  Y  I  S  L  T  L  D  W  N  L  I  S  T  L  I  C  D  S  V  E  P  *  E  M  T  S  *  E  L  A  C  Y  V  L  C  P  S  *  S  G  L  A  G  H  K  H  T  R  E  S  *  *  N  E  L  F  S  T  P  D  C  S  N  P  N  M  *  D  D  M  *  R  G  T  K  P  K  P  L  V  T  C  H  L  Y  H  Y  A  S  * </first_frame>
            <second_frame>  E  P  C  L  E  E  R  *  N  S  N  H  I  H  I  S  T  *  L  Y  I  C  F  L  E  Y  C  I  Y  V  A  A  S  C  S  F  K  D  K  R  *  S  T  M  H  N  S  F  L  M  I  T  P  Y  Y  I  I  Y  I  S  A  *  R  S  T  G  I  S  F  Q  H  *  S  V  T  Q  L  S  P  E  R  *  Q  V  E  N  W  P  V  T  C  F  V  L  L  N  L  D  *  L  V  I  N  T  P  G  K  A  N  E  M  S  S  F  Q  P  L  I  V  A  T  P  I  C  R  M  I  C  N  V  V  P  S  R  S  L  W  *  H  V  I  Y  I  I  T  P  L   </second_frame>
            <third_frame>   N  H  V  *  K  K  D  E  T  Q  I  T  Y  I  L  V  L  S  C  T  S  V  S  *  S  T  A  Y  M  L  Q  L  H  A  V  L  K  T  K  G  S  Q  Q  C  I  T  V  F  L  *  S  H  P  I  T  L  Y  I  Y  Q  L  N  A  R  L  E  S  H  F  N  T  N  L  *  L  S  *  A  L  R  D  D  K  L  R  T  G  L  L  R  A  L  S  F  L  I  W  I  S  W  S  *  T  H  Q  G  K  L  M  K  *  A  L  F  N  P  *  L  *  Q  P  Q  Y  V  G  *  Y  V  T  W  Y  Q  A  E  A  F  G  N  M  S  S  I  S  L  R  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0145P19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="108888" PGL_stop="105289"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108888" e_stop="108672"/>
            <exon e_start="108475" e_stop="108384"/>
            <exon e_start="107953" e_stop="107846"/>
            <exon e_start="107764" e_stop="107682"/>
            <exon e_start="107552" e_stop="107419"/>
            <exon e_start="107275" e_stop="107226"/>
            <exon e_start="107077" e_stop="106985"/>
            <exon e_start="106169" e_stop="106078"/>
            <exon e_start="105688" e_stop="105660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.918" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.513" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.814" e_score="1.000"/>
          <exon-intron don_prob="0.720" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.698" acc_prob="0.956" e_score="0.957"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108888" e_stop="108672" e_length="217"/>
          </exon>
          <intron i_serial="1" don_prob="0.918" acc_prob="1.000">
            <gDNA_intron_boundary i_start="108671" i_stop="108476" i_length="196"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108475" e_stop="108384" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108383" i_stop="107954" i_length="430"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107953" e_stop="107846" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.513" acc_prob="0.980">
            <gDNA_intron_boundary i_start="107845" i_stop="107765" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="107764" e_stop="107682" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.814">
            <gDNA_intron_boundary i_start="107681" i_stop="107553" i_length="129"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="107552" e_stop="107419" e_length="134"/>
          </exon>
          <intron i_serial="5" don_prob="0.720" acc_prob="0.989">
            <gDNA_intron_boundary i_start="107418" i_stop="107276" i_length="143"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="107275" e_stop="107226" e_length="50"/>
          </exon>
          <intron i_serial="6" don_prob="0.923" acc_prob="0.995">
            <gDNA_intron_boundary i_start="107225" i_stop="107078" i_length="148"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="107077" e_stop="106985" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.952" acc_prob="0.999">
            <gDNA_intron_boundary i_start="106984" i_stop="106170" i_length="815"/>
          </intron>
          <exon e_serial="8" e_score="0.957">
            <gDNA_exon_boundary e_start="106169" e_stop="106078" e_length="92"/>
          </exon>
          <intron i_serial="8" don_prob="0.698" acc_prob="0.956">
            <gDNA_intron_boundary i_start="106077" i_stop="105689" i_length="389"/>
          </intron>
          <exon e_serial="9" e_score="0.931">
            <gDNA_exon_boundary e_start="105688" e_stop="105660" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108888" stop="108672"/>
              <exon start="108475" stop="108384"/>
              <exon start="107953" stop="107846"/>
              <exon start="107764" stop="107682"/>
              <exon start="107552" stop="107419"/>
              <exon start="107275" stop="107226"/>
              <exon start="107077" stop="106985"/>
              <exon start="106169" stop="106078"/>
              <exon start="105688" stop="105660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108887" stop="108672"/>
              <exon start="108475" stop="108384"/>
              <exon start="107953" stop="107846"/>
              <exon start="107764" stop="107682"/>
              <exon start="107552" stop="107419"/>
              <exon start="107275" stop="107226"/>
              <exon start="107077" stop="106985"/>
              <exon start="106169" stop="106110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108868" stop="108672"/>
              <exon start="108475" stop="108384"/>
              <exon start="107953" stop="107846"/>
              <exon start="107764" stop="107682"/>
              <exon start="107552" stop="107467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108854" stop="108672"/>
              <exon start="108475" stop="108384"/>
              <exon start="107953" stop="107846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358748" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTAAAGAATGGCTGGCAATTTATGTATAACTCTCACTCAATCTTCACCCTTTTCACCAAAACTTTATTATTCATCAAAACCCCTTCTTCAGAAATCACATAGAATCTCTATTGCCCCATTTCTCAAATTTCAAGATTCAGCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAA : GGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAG : TTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGC : TATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATG : ATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTAGCAATGTCTGCTTTCAATGGTGAGCCGCCACAAAGAGAG : ACTGATGCGCTTGCTCGGTTACTCCCATTGATAGGCTCCTCAAGTATCAG : CACTGCTTCTCTGCTGGGCATTACCGGTGTACTTGCTCCAATTCTCGAGGAGACTGTGTTTAGAGGATTTTTTATGGTCTCTCTGACTAAGTG : GGTACCTACACCGCTTGCAGCGGTTATTAGTGGTGCTGTATTTGCTCTTGCACATCTCACTCCTGGACAATTTCCTCAGTTGTTTGTTCTTG : GGACTGCTCTGGGTTTTTCTTATGCTCAA</gDNA_template>
            <first_frame> L  L  K  N  G  W  Q  F  M  Y  N  S  H  S  I  F  T  L  F  T  K  T  L  L  F  I  K  T  P  S  S  E  I  T  *  N  L  Y  C  P  I  S  Q  I  S  R  F  S  S  *  S  R  F  Y  K  R  V  H  Y  Y  M  F  F  *  S  Q  K  W  S  W  L  *   : R  R  W  T  *  L  A  N  F  E  T  L  G  C  A  M  E  L  A  N  C  F  T  F  F  T  C  M  W  I  K  :  F  C  F  D  R  T  N  R  G  S  V  N  T  L  C  R  T  *  C  R  S  I  E  L  G  R  E  G  *  N  F  V  R  *  S  S  :  Y  N  N  C  S  C  A  N  S  P  L  C  S  H  Q  V  I  S  T  T  S  *  *  H  I  S  L  * :   S  E  G  T  F  Q  S  P  E  R  M  A  F  V  G  W  N  W  S  R  G  S  N  R  C  N  C  F  N  R  S  S  N  V  C  F  Q  W  *  A  A  T  K  R   : D  *  C  A  C  S  V  T  P  I  D  R  L  L  K  Y  Q  :  H  C  F  S  A  G  H  Y  R  C  T  C  S  N  S  R  G  D  C  V  *  R  I  F  Y  G  L  S  D  *  V  :  G  T  Y  T  A  C  S  G  Y  *  W  C  C  I  C  S  C  T  S  H  S  W  T  I  S  S  V  V  C  S  W :   D  C  S  G  F  F  L  C  S  </first_frame>
            <second_frame>  F  *  R  M  A  G  N  L  C  I  T  L  T  Q  S  S  P  F  S  P  K  L  Y  Y  S  S  K  P  L  L  Q  K  S  H  R  I  S  I  A  P  F  L  K  F  Q  D  S  A  P  S  Q  G  S  T  R  G  F  T  T  I  C  F  S  S  P  R  N  G  P  G  Y  K  :  G  G  G  P  D  W  P  I  L  R  R  W  D  V  P  W  N  W  Q  T  V  S  L  S  S  L  A  C  G  L  S :   F  V  L  T  G  L  I  E  A  A  S  I  P  Y  V  G  L  D  V  E  A  L  S  L  D  E  K  A  E  I  L  F  A  D  Q  A :   I  T  T  A  V  V  L  I  V  L  Y  A  L  T  K  S  S  Q  P  L  P  D  D  I  Y  R  Y   : D  L  K  E  P  F  N  L  Q  R  G  W  L  L  W  A  G  I  G  L  G  G  A  I  G  A  I  A  L  T  G  V  A  M  S  A  F  N  G  E  P  P  Q  R  E  :  T  D  A  L  A  R  L  L  P  L  I  G  S  S  S  I  S :   T  A  S  L  L  G  I  T  G  V  L  A  P  I  L  E  E  T  V  F  R  G  F  F  M  V  S  L  T  K  W :   V  P  T  P  L  A  A  V  I  S  G  A  V  F  A  L  A  H  L  T  P  G  Q  F  P  Q  L  F  V  L   : G  T  A  L  G  F  S  Y  A  Q </second_frame>
            <third_frame>   F  K  E  W  L  A  I  Y  V  *  L  S  L  N  L  H  P  F  H  Q  N  F  I  I  H  Q  N  P  F  F  R  N  H  I  E  S  L  L  P  H  F  S  N  F  K  I  Q  L  L  V  K  V  L  Q  E  G  S  L  L  Y  V  F  L  V  P  E  M  V  L  V  I  K :   E  V  D  L  I  G  Q  F  *  D  A  G  M  C  H  G  I  G  K  L  F  H  F  L  H  L  H  V  D  *   : V  L  F  *  Q  D  *  S  R  Q  R  Q  Y  P  M  *  D  L  M  *  K  H  *  A  W  T  R  R  L  K  F  C  S  L  I  K   : L  *  Q  L  Q  L  C  *  *  S  F  M  L  S  P  S  H  L  N  H  F  L  M  T  Y  I  V  M  :  I  *  R  N  L  S  I  S  R  E  D  G  F  C  G  L  E  L  V  *  G  E  Q  *  V  Q  L  L  *  Q  E  *  Q  C  L  L  S  M  V  S  R  H  K  E  R :   L  M  R  L  L  G  Y  S  H  *  *  A  P  Q  V  S   : A  L  L  L  C  W  A  L  P  V  Y  L  L  Q  F  S  R  R  L  C  L  E  D  F  L  W  S  L  *  L  S   : G  Y  L  H  R  L  Q  R  L  L  V  V  L  Y  L  L  L  H  I  S  L  L  D  N  F  L  S  C  L  F  L  :  G  L  L  W  V  F  L  M  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108881" stop="108672"/>
                    <exon start="108475" stop="108384"/>
                    <exon start="107953" stop="107846"/>
                    <exon start="107764" stop="107682"/>
                    <exon start="107552" stop="107419"/>
                    <exon start="107275" stop="107226"/>
                    <exon start="107077" stop="106985"/>
                    <exon start="106169" stop="106078"/>
                    <exon start="105688" stop="105660"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMAGNLCITLTQSSPFSPKLYYSSKPLLQKSHRISIAPFLKFQDSAPSQGSTRGFTTICFSSPRNGPGYKGGGPDWPILRRWDVPWNWQTVSLSSLACGLSFVLTGLIEAASIPYVGLDVEALSLDEKAEILFADQAITTAVVLIVLYALTKSSQPLPDDIYRYDLKEPFNLQRGWLLWAGIGLGGAIGAIALTGVAMSAFNGEPPQRETDALARLLPLIGSSSISTASLLGITGVLAPILEETVFRGFFMVSLTKWVPTPLAAVISGAVFALAHLTPGQFPQLFVLGTALGFSYAQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="108887" e_stop="108672"/>
            <exon e_start="108475" e_stop="108384"/>
            <exon e_start="107953" e_stop="107846"/>
            <exon e_start="107764" e_stop="107682"/>
            <exon e_start="107552" e_stop="107419"/>
            <exon e_start="107275" e_stop="107226"/>
            <exon e_start="107077" e_stop="106985"/>
            <exon e_start="106169" e_stop="105520"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.918" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.513" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.814" e_score="1.000"/>
          <exon-intron don_prob="0.720" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108887" e_stop="108672" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.918" acc_prob="1.000">
            <gDNA_intron_boundary i_start="108671" i_stop="108476" i_length="196"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108475" e_stop="108384" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108383" i_stop="107954" i_length="430"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107953" e_stop="107846" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.513" acc_prob="0.980">
            <gDNA_intron_boundary i_start="107845" i_stop="107765" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="107764" e_stop="107682" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.814">
            <gDNA_intron_boundary i_start="107681" i_stop="107553" i_length="129"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="107552" e_stop="107419" e_length="134"/>
          </exon>
          <intron i_serial="5" don_prob="0.720" acc_prob="0.989">
            <gDNA_intron_boundary i_start="107418" i_stop="107276" i_length="143"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="107275" e_stop="107226" e_length="50"/>
          </exon>
          <intron i_serial="6" don_prob="0.923" acc_prob="0.995">
            <gDNA_intron_boundary i_start="107225" i_stop="107078" i_length="148"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="107077" e_stop="106985" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.952" acc_prob="0.999">
            <gDNA_intron_boundary i_start="106984" i_stop="106170" i_length="815"/>
          </intron>
          <exon e_serial="8" e_score="0.989">
            <gDNA_exon_boundary e_start="106169" e_stop="105520" e_length="650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108887" stop="108672"/>
              <exon start="108475" stop="108384"/>
              <exon start="107953" stop="107846"/>
              <exon start="107764" stop="107682"/>
              <exon start="107552" stop="107419"/>
              <exon start="107275" stop="107226"/>
              <exon start="107077" stop="106985"/>
              <exon start="106169" stop="106110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108868" stop="108672"/>
              <exon start="108475" stop="108384"/>
              <exon start="107953" stop="107846"/>
              <exon start="107764" stop="107682"/>
              <exon start="107552" stop="107467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108854" stop="108672"/>
              <exon start="108475" stop="108384"/>
              <exon start="107953" stop="107846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107545" stop="107419"/>
              <exon start="107275" stop="107226"/>
              <exon start="107077" stop="106985"/>
              <exon start="106169" stop="105520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703501" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTAAAGAATGGCTGGCAATTTATGTATAACTCTCACTCAATCTTCACCCTTTTCACCAAAACTTTATTATTCATCAAAACCCCTTCTTCAGAAATCACATAGAATCTCTATTGCCCCATTTCTCAAATTTCAAGATTCAGCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAA : GGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAG : TTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGC : TATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATG : ATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTAGCAATGTCTGCTTTCAATGGTGAGCCGCCACAAAGAGAG : ACTGATGCGCTTGCTCGGTTACTCCCATTGATAGGCTCCTCAAGTATCAG : CACTGCTTCTCTGCTGGGCATTACCGGTGTACTTGCTCCAATTCTCGAGGAGACTGTGTTTAGAGGATTTTTTATGGTCTCTCTGACTAAGTG : GGTACCTACACCGCTTGCAGCGGTTATTAGTGGTGCTGTATTTGCTCTTGCACATCTCACTCCTGGACAATTTCCTCAGTTGTTTGTTCTTGGTATTGCTTCCATTTTCTTAAATGTATACGACACTGAACGAAAGTAGAGGAAAAGCAGAAATTACAAAAAGGAATAACATAATTGGGTTTTACTTCTGAAAGTTCTCAAAAAGATCTATTTATGAAGGAGAAAATAGTTATAGTAAGAATTGATTTTACCTTGTAAGACATGATCAACAACTTTCTGTAGTTTTTGAGCTTTTATTCAATTTTAGAGGAATGAAATGAATTCAAACATGGTAAAAATGGATACAAAGGGTTCATGTAGTGTACCTCTACTAGTTTGGAATTGAAGCACCGTTGAGGCAAATACTTAAATTGATTCTACCCTTTCTTATAGTGCATTTTTCTTCATGTTTAATCTGAGCTGAAAAATGACATGCTTTCAGGGACTGCTCTGGGTTTTTCTTATGCTCAAACGCGAAACCTCCTAACCCCAATCACAATTCATGCTTTATGGAACTCTGGTGTTATTTTGCTTCTTACCTTCCTTCAGGTAATCTGTTCCTCATTGTCATTTAAAGCATGGCAACAGTATTTGTTGCCATGTTGCTTTCT</gDNA_template>
            <first_frame> F  *  R  M  A  G  N  L  C  I  T  L  T  Q  S  S  P  F  S  P  K  L  Y  Y  S  S  K  P  L  L  Q  K  S  H  R  I  S  I  A  P  F  L  K  F  Q  D  S  A  P  S  Q  G  S  T  R  G  F  T  T  I  C  F  S  S  P  R  N  G  P  G  Y  K  :  G  G  G  P  D  W  P  I  L  R  R  W  D  V  P  W  N  W  Q  T  V  S  L  S  S  L  A  C  G  L  S :   F  V  L  T  G  L  I  E  A  A  S  I  P  Y  V  G  L  D  V  E  A  L  S  L  D  E  K  A  E  I  L  F  A  D  Q  A :   I  T  T  A  V  V  L  I  V  L  Y  A  L  T  K  S  S  Q  P  L  P  D  D  I  Y  R  Y   : D  L  K  E  P  F  N  L  Q  R  G  W  L  L  W  A  G  I  G  L  G  G  A  I  G  A  I  A  L  T  G  V  A  M  S  A  F  N  G  E  P  P  Q  R  E  :  T  D  A  L  A  R  L  L  P  L  I  G  S  S  S  I  S :   T  A  S  L  L  G  I  T  G  V  L  A  P  I  L  E  E  T  V  F  R  G  F  F  M  V  S  L  T  K  W :   V  P  T  P  L  A  A  V  I  S  G  A  V  F  A  L  A  H  L  T  P  G  Q  F  P  Q  L  F  V  L  G  I  A  S  I  F  L  N  V  Y  D  T  E  R  K  *  R  K  S  R  N  Y  K  K  E  *  H  N  W  V  L  L  L  K  V  L  K  K  I  Y  L  *  R  R  K  *  L  *  *  E  L  I  L  P  C  K  T  *  S  T  T  F  C  S  F  *  A  F  I  Q  F  *  R  N  E  M  N  S  N  M  V  K  M  D  T  K  G  S  C  S  V  P  L  L  V  W  N  *  S  T  V  E  A  N  T  *  I  D  S  T  L  S  Y  S  A  F  F  F  M  F  N  L  S  *  K  M  T  C  F  Q  G  L  L  W  V  F  L  M  L  K  R  E  T  S  *  P  Q  S  Q  F  M  L  Y  G  T  L  V  L  F  C  F  L  P  S  F  R  *  S  V  P  H  C  H  L  K  H  G  N  S  I  C  C  H  V  A  F  </first_frame>
            <second_frame>  F  K  E  W  L  A  I  Y  V  *  L  S  L  N  L  H  P  F  H  Q  N  F  I  I  H  Q  N  P  F  F  R  N  H  I  E  S  L  L  P  H  F  S  N  F  K  I  Q  L  L  V  K  V  L  Q  E  G  S  L  L  Y  V  F  L  V  P  E  M  V  L  V  I  K :   E  V  D  L  I  G  Q  F  *  D  A  G  M  C  H  G  I  G  K  L  F  H  F  L  H  L  H  V  D  *   : V  L  F  *  Q  D  *  S  R  Q  R  Q  Y  P  M  *  D  L  M  *  K  H  *  A  W  T  R  R  L  K  F  C  S  L  I  K   : L  *  Q  L  Q  L  C  *  *  S  F  M  L  S  P  S  H  L  N  H  F  L  M  T  Y  I  V  M  :  I  *  R  N  L  S  I  S  R  E  D  G  F  C  G  L  E  L  V  *  G  E  Q  *  V  Q  L  L  *  Q  E  *  Q  C  L  L  S  M  V  S  R  H  K  E  R :   L  M  R  L  L  G  Y  S  H  *  *  A  P  Q  V  S   : A  L  L  L  C  W  A  L  P  V  Y  L  L  Q  F  S  R  R  L  C  L  E  D  F  L  W  S  L  *  L  S   : G  Y  L  H  R  L  Q  R  L  L  V  V  L  Y  L  L  L  H  I  S  L  L  D  N  F  L  S  C  L  F  L  V  L  L  P  F  S  *  M  Y  T  T  L  N  E  S  R  G  K  A  E  I  T  K  R  N  N  I  I  G  F  Y  F  *  K  F  S  K  R  S  I  Y  E  G  E  N  S  Y  S  K  N  *  F  Y  L  V  R  H  D  Q  Q  L  S  V  V  F  E  L  L  F  N  F  R  G  M  K  *  I  Q  T  W  *  K  W  I  Q  R  V  H  V  V  Y  L  Y  *  F  G  I  E  A  P  L  R  Q  I  L  K  L  I  L  P  F  L  I  V  H  F  S  S  C  L  I  *  A  E  K  *  H  A  F  R  D  C  S  G  F  F  L  C  S  N  A  K  P  P  N  P  N  H  N  S  C  F  M  E  L  W  C  Y  F  A  S  Y  L  P  S  G  N  L  F  L  I  V  I  *  S  M  A  T  V  F  V  A  M  L  L  S </second_frame>
            <third_frame>   L  K  N  G  W  Q  F  M  Y  N  S  H  S  I  F  T  L  F  T  K  T  L  L  F  I  K  T  P  S  S  E  I  T  *  N  L  Y  C  P  I  S  Q  I  S  R  F  S  S  *  S  R  F  Y  K  R  V  H  Y  Y  M  F  F  *  S  Q  K  W  S  W  L  *   : R  R  W  T  *  L  A  N  F  E  T  L  G  C  A  M  E  L  A  N  C  F  T  F  F  T  C  M  W  I  K  :  F  C  F  D  R  T  N  R  G  S  V  N  T  L  C  R  T  *  C  R  S  I  E  L  G  R  E  G  *  N  F  V  R  *  S  S  :  Y  N  N  C  S  C  A  N  S  P  L  C  S  H  Q  V  I  S  T  T  S  *  *  H  I  S  L  * :   S  E  G  T  F  Q  S  P  E  R  M  A  F  V  G  W  N  W  S  R  G  S  N  R  C  N  C  F  N  R  S  S  N  V  C  F  Q  W  *  A  A  T  K  R   : D  *  C  A  C  S  V  T  P  I  D  R  L  L  K  Y  Q  :  H  C  F  S  A  G  H  Y  R  C  T  C  S  N  S  R  G  D  C  V  *  R  I  F  Y  G  L  S  D  *  V  :  G  T  Y  T  A  C  S  G  Y  *  W  C  C  I  C  S  C  T  S  H  S  W  T  I  S  S  V  V  C  S  W  Y  C  F  H  F  L  K  C  I  R  H  *  T  K  V  E  E  K  Q  K  L  Q  K  G  I  T  *  L  G  F  T  S  E  S  S  Q  K  D  L  F  M  K  E  K  I  V  I  V  R  I  D  F  T  L  *  D  M  I  N  N  F  L  *  F  L  S  F  Y  S  I  L  E  E  *  N  E  F  K  H  G  K  N  G  Y  K  G  F  M  *  C  T  S  T  S  L  E  L  K  H  R  *  G  K  Y  L  N  *  F  Y  P  F  L  *  C  I  F  L  H  V  *  S  E  L  K  N  D  M  L  S  G  T  A  L  G  F  S  Y  A  Q  T  R  N  L  L  T  P  I  T  I  H  A  L  W  N  S  G  V  I  L  L  L  T  F  L  Q  V  I  C  S  S  L  S  F  K  A  W  Q  Q  Y  L  L  P  C  C  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108881" stop="108672"/>
                    <exon start="108475" stop="108384"/>
                    <exon start="107953" stop="107846"/>
                    <exon start="107764" stop="107682"/>
                    <exon start="107552" stop="107419"/>
                    <exon start="107275" stop="107226"/>
                    <exon start="107077" stop="106985"/>
                    <exon start="106169" stop="106031"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>906</number_coding_nucleotides>
                  <number_encoded_amino_acids>302</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMAGNLCITLTQSSPFSPKLYYSSKPLLQKSHRISIAPFLKFQDSAPSQGSTRGFTTICFSSPRNGPGYKGGGPDWPILRRWDVPWNWQTVSLSSLACGLSFVLTGLIEAASIPYVGLDVEALSLDEKAEILFADQAITTAVVLIVLYALTKSSQPLPDDIYRYDLKEPFNLQRGWLLWAGIGLGGAIGAIALTGVAMSAFNGEPPQRETDALARLLPLIGSSSISTASLLGITGVLAPILEETVFRGFFMVSLTKWVPTPLAAVISGAVFALAHLTPGQFPQLFVLGIASIFLNVYDTERK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105716" stop="105522"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SELKNDMLSGTALGFSYAQTRNLLTPITIHALWNSGVILLLTFLQVICSSLSFKAWQQYLLPCCF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="108854" e_stop="108672"/>
            <exon e_start="108475" e_stop="108384"/>
            <exon e_start="107953" e_stop="107682"/>
            <exon e_start="107552" e_stop="107419"/>
            <exon e_start="107275" e_stop="107226"/>
            <exon e_start="107077" e_stop="106985"/>
            <exon e_start="106169" e_stop="105520"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.918" acc_prob="1.000" e_score="0.989"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.814" e_score="0.871"/>
          <exon-intron don_prob="0.720" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="108854" e_stop="108672" e_length="183"/>
          </exon>
          <intron i_serial="1" don_prob="0.918" acc_prob="1.000">
            <gDNA_intron_boundary i_start="108671" i_stop="108476" i_length="196"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108475" e_stop="108384" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108383" i_stop="107954" i_length="430"/>
          </intron>
          <exon e_serial="3" e_score="0.871">
            <gDNA_exon_boundary e_start="107953" e_stop="107682" e_length="272"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.814">
            <gDNA_intron_boundary i_start="107681" i_stop="107553" i_length="129"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="107552" e_stop="107419" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.720" acc_prob="0.989">
            <gDNA_intron_boundary i_start="107418" i_stop="107276" i_length="143"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="107275" e_stop="107226" e_length="50"/>
          </exon>
          <intron i_serial="5" don_prob="0.923" acc_prob="0.995">
            <gDNA_intron_boundary i_start="107225" i_stop="107078" i_length="148"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="107077" e_stop="106985" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.952" acc_prob="0.999">
            <gDNA_intron_boundary i_start="106984" i_stop="106170" i_length="815"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="106169" e_stop="105520" e_length="650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108854" stop="108672"/>
              <exon start="108475" stop="108384"/>
              <exon start="107953" stop="107846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107890" stop="107682"/>
              <exon start="107552" stop="107419"/>
              <exon start="107275" stop="107226"/>
              <exon start="107077" stop="107072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107545" stop="107419"/>
              <exon start="107275" stop="107226"/>
              <exon start="107077" stop="106985"/>
              <exon start="106169" stop="105520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703501" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCACTCAATCTTCACCCTTTTCACCAAAACTTTATTATTCATCAAAACCCCTTCTTCAGAAATCACATAGAATCTCTATTGCCCCATTTCTCAAATTTCAAGATTCAGCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAA : GGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAG : TTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGCGTATGGACAGTCATTTTAGCATTGTTTCCATATTGTGTCGAATCTTGATGATTCTGATGTTTCGTGTATTTCTTTTTTCAGTATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATG : ATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTAGCAATGTCTGCTTTCAATGGTGAGCCGCCACAAAGAGAG : ACTGATGCGCTTGCTCGGTTACTCCCATTGATAGGCTCCTCAAGTATCAG : CACTGCTTCTCTGCTGGGCATTACCGGTGTACTTGCTCCAATTCTCGAGGAGACTGTGTTTAGAGGATTTTTTATGGTCTCTCTGACTAAGTG : GGTACCTACACCGCTTGCAGCGGTTATTAGTGGTGCTGTATTTGCTCTTGCACATCTCACTCCTGGACAATTTCCTCAGTTGTTTGTTCTTGGTATTGCTTCCATTTTCTTAAATGTATACGACACTGAACGAAAGTAGAGGAAAAGCAGAAATTACAAAAAGGAATAACATAATTGGGTTTTACTTCTGAAAGTTCTCAAAAAGATCTATTTATGAAGGAGAAAATAGTTATAGTAAGAATTGATTTTACCTTGTAAGACATGATCAACAACTTTCTGTAGTTTTTGAGCTTTTATTCAATTTTAGAGGAATGAAATGAATTCAAACATGGTAAAAATGGATACAAAGGGTTCATGTAGTGTACCTCTACTAGTTTGGAATTGAAGCACCGTTGAGGCAAATACTTAAATTGATTCTACCCTTTCTTATAGTGCATTTTTCTTCATGTTTAATCTGAGCTGAAAAATGACATGCTTTCAGGGACTGCTCTGGGTTTTTCTTATGCTCAAACGCGAAACCTCCTAACCCCAATCACAATTCATGCTTTATGGAACTCTGGTGTTATTTTGCTTCTTACCTTCCTTCAGGTAATCTGTTCCTCATTGTCATTTAAAGCATGGCAACAGTATTTGTTGCCATGTTGCTTTCT</gDNA_template>
            <first_frame> L  T  Q  S  S  P  F  S  P  K  L  Y  Y  S  S  K  P  L  L  Q  K  S  H  R  I  S  I  A  P  F  L  K  F  Q  D  S  A  P  S  Q  G  S  T  R  G  F  T  T  I  C  F  S  S  P  R  N  G  P  G  Y  K  :  G  G  G  P  D  W  P  I  L  R  R  W  D  V  P  W  N  W  Q  T  V  S  L  S  S  L  A  C  G  L  S :   F  V  L  T  G  L  I  E  A  A  S  I  P  Y  V  G  L  D  V  E  A  L  S  L  D  E  K  A  E  I  L  F  A  D  Q  A  Y  G  Q  S  F  *  H  C  F  H  I  V  S  N  L  D  D  S  D  V  S  C  I  S  F  F  S  I  T  T  A  V  V  L  I  V  L  Y  A  L  T  K  S  S  Q  P  L  P  D  D  I  Y  R  Y   : D  L  K  E  P  F  N  L  Q  R  G  W  L  L  W  A  G  I  G  L  G  G  A  I  G  A  I  A  L  T  G  V  A  M  S  A  F  N  G  E  P  P  Q  R  E  :  T  D  A  L  A  R  L  L  P  L  I  G  S  S  S  I  S :   T  A  S  L  L  G  I  T  G  V  L  A  P  I  L  E  E  T  V  F  R  G  F  F  M  V  S  L  T  K  W :   V  P  T  P  L  A  A  V  I  S  G  A  V  F  A  L  A  H  L  T  P  G  Q  F  P  Q  L  F  V  L  G  I  A  S  I  F  L  N  V  Y  D  T  E  R  K  *  R  K  S  R  N  Y  K  K  E  *  H  N  W  V  L  L  L  K  V  L  K  K  I  Y  L  *  R  R  K  *  L  *  *  E  L  I  L  P  C  K  T  *  S  T  T  F  C  S  F  *  A  F  I  Q  F  *  R  N  E  M  N  S  N  M  V  K  M  D  T  K  G  S  C  S  V  P  L  L  V  W  N  *  S  T  V  E  A  N  T  *  I  D  S  T  L  S  Y  S  A  F  F  F  M  F  N  L  S  *  K  M  T  C  F  Q  G  L  L  W  V  F  L  M  L  K  R  E  T  S  *  P  Q  S  Q  F  M  L  Y  G  T  L  V  L  F  C  F  L  P  S  F  R  *  S  V  P  H  C  H  L  K  H  G  N  S  I  C  C  H  V  A  F  </first_frame>
            <second_frame>  S  L  N  L  H  P  F  H  Q  N  F  I  I  H  Q  N  P  F  F  R  N  H  I  E  S  L  L  P  H  F  S  N  F  K  I  Q  L  L  V  K  V  L  Q  E  G  S  L  L  Y  V  F  L  V  P  E  M  V  L  V  I  K :   E  V  D  L  I  G  Q  F  *  D  A  G  M  C  H  G  I  G  K  L  F  H  F  L  H  L  H  V  D  *   : V  L  F  *  Q  D  *  S  R  Q  R  Q  Y  P  M  *  D  L  M  *  K  H  *  A  W  T  R  R  L  K  F  C  S  L  I  K  R  M  D  S  H  F  S  I  V  S  I  L  C  R  I  L  M  I  L  M  F  R  V  F  L  F  S  V  *  Q  L  Q  L  C  *  *  S  F  M  L  S  P  S  H  L  N  H  F  L  M  T  Y  I  V  M  :  I  *  R  N  L  S  I  S  R  E  D  G  F  C  G  L  E  L  V  *  G  E  Q  *  V  Q  L  L  *  Q  E  *  Q  C  L  L  S  M  V  S  R  H  K  E  R :   L  M  R  L  L  G  Y  S  H  *  *  A  P  Q  V  S   : A  L  L  L  C  W  A  L  P  V  Y  L  L  Q  F  S  R  R  L  C  L  E  D  F  L  W  S  L  *  L  S   : G  Y  L  H  R  L  Q  R  L  L  V  V  L  Y  L  L  L  H  I  S  L  L  D  N  F  L  S  C  L  F  L  V  L  L  P  F  S  *  M  Y  T  T  L  N  E  S  R  G  K  A  E  I  T  K  R  N  N  I  I  G  F  Y  F  *  K  F  S  K  R  S  I  Y  E  G  E  N  S  Y  S  K  N  *  F  Y  L  V  R  H  D  Q  Q  L  S  V  V  F  E  L  L  F  N  F  R  G  M  K  *  I  Q  T  W  *  K  W  I  Q  R  V  H  V  V  Y  L  Y  *  F  G  I  E  A  P  L  R  Q  I  L  K  L  I  L  P  F  L  I  V  H  F  S  S  C  L  I  *  A  E  K  *  H  A  F  R  D  C  S  G  F  F  L  C  S  N  A  K  P  P  N  P  N  H  N  S  C  F  M  E  L  W  C  Y  F  A  S  Y  L  P  S  G  N  L  F  L  I  V  I  *  S  M  A  T  V  F  V  A  M  L  L  S </second_frame>
            <third_frame>   H  S  I  F  T  L  F  T  K  T  L  L  F  I  K  T  P  S  S  E  I  T  *  N  L  Y  C  P  I  S  Q  I  S  R  F  S  S  *  S  R  F  Y  K  R  V  H  Y  Y  M  F  F  *  S  Q  K  W  S  W  L  *   : R  R  W  T  *  L  A  N  F  E  T  L  G  C  A  M  E  L  A  N  C  F  T  F  F  T  C  M  W  I  K  :  F  C  F  D  R  T  N  R  G  S  V  N  T  L  C  R  T  *  C  R  S  I  E  L  G  R  E  G  *  N  F  V  R  *  S  S  V  W  T  V  I  L  A  L  F  P  Y  C  V  E  S  *  *  F  *  C  F  V  Y  F  F  F  Q  Y  N  N  C  S  C  A  N  S  P  L  C  S  H  Q  V  I  S  T  T  S  *  *  H  I  S  L  * :   S  E  G  T  F  Q  S  P  E  R  M  A  F  V  G  W  N  W  S  R  G  S  N  R  C  N  C  F  N  R  S  S  N  V  C  F  Q  W  *  A  A  T  K  R   : D  *  C  A  C  S  V  T  P  I  D  R  L  L  K  Y  Q  :  H  C  F  S  A  G  H  Y  R  C  T  C  S  N  S  R  G  D  C  V  *  R  I  F  Y  G  L  S  D  *  V  :  G  T  Y  T  A  C  S  G  Y  *  W  C  C  I  C  S  C  T  S  H  S  W  T  I  S  S  V  V  C  S  W  Y  C  F  H  F  L  K  C  I  R  H  *  T  K  V  E  E  K  Q  K  L  Q  K  G  I  T  *  L  G  F  T  S  E  S  S  Q  K  D  L  F  M  K  E  K  I  V  I  V  R  I  D  F  T  L  *  D  M  I  N  N  F  L  *  F  L  S  F  Y  S  I  L  E  E  *  N  E  F  K  H  G  K  N  G  Y  K  G  F  M  *  C  T  S  T  S  L  E  L  K  H  R  *  G  K  Y  L  N  *  F  Y  P  F  L  *  C  I  F  L  H  V  *  S  E  L  K  N  D  M  L  S  G  T  A  L  G  F  S  Y  A  Q  T  R  N  L  L  T  P  I  T  I  H  A  L  W  N  S  G  V  I  L  L  L  T  F  L  Q  V  I  C  S  S  L  S  F  K  A  W  Q  Q  Y  L  L  P  C  C  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107826" stop="107682"/>
                    <exon start="107552" stop="107419"/>
                    <exon start="107275" stop="107226"/>
                    <exon start="107077" stop="106985"/>
                    <exon start="106169" stop="106031"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HCFHIVSNLDDSDVSCISFFSITTAVVLIVLYALTKSSQPLPDDIYRYDLKEPFNLQRGWLLWAGIGLGGAIGAIALTGVAMSAFNGEPPQRETDALARLLPLIGSSSISTASLLGITGVLAPILEETVFRGFFMVSLTKWVPTPLAAVISGAVFALAHLTPGQFPQLFVLGIASIFLNVYDTERK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108854" stop="108672"/>
                    <exon start="108475" stop="108384"/>
                    <exon start="107953" stop="107827"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTQSSPFSPKLYYSSKPLLQKSHRISIAPFLKFQDSAPSQGSTRGFTTICFSSPRNGPGYKGGGPDWPILRRWDVPWNWQTVSLSSLACGLSFVLTGLIEAASIPYVGLDVEALSLDEKAEILFADQAYGQSF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105716" stop="105522"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SELKNDMLSGTALGFSYAQTRNLLTPITIHALWNSGVILLLTFLQVICSSLSFKAWQQYLLPCCF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="108869" e_stop="108672"/>
            <exon e_start="108475" e_stop="108384"/>
            <exon e_start="107957" e_stop="107846"/>
            <exon e_start="107764" e_stop="107682"/>
            <exon e_start="107552" e_stop="107419"/>
            <exon e_start="107275" e_stop="107226"/>
            <exon e_start="107077" e_stop="106985"/>
            <exon e_start="106169" e_stop="105520"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.918" acc_prob="1.000" e_score="0.864"/>
          <exon-intron don_prob="0.000" acc_prob="0.564" e_score="0.989"/>
          <exon-intron don_prob="0.513" acc_prob="0.980" e_score="0.955"/>
          <exon-intron don_prob="0.990" acc_prob="0.814" e_score="0.988"/>
          <exon-intron don_prob="0.720" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.864">
            <gDNA_exon_boundary e_start="108869" e_stop="108672" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="0.918" acc_prob="1.000">
            <gDNA_intron_boundary i_start="108671" i_stop="108476" i_length="196"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="108475" e_stop="108384" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.564">
            <gDNA_intron_boundary i_start="108383" i_stop="107958" i_length="426"/>
          </intron>
          <exon e_serial="3" e_score="0.955">
            <gDNA_exon_boundary e_start="107957" e_stop="107846" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.513" acc_prob="0.980">
            <gDNA_intron_boundary i_start="107845" i_stop="107765" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="107764" e_stop="107682" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.814">
            <gDNA_intron_boundary i_start="107681" i_stop="107553" i_length="129"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="107552" e_stop="107419" e_length="134"/>
          </exon>
          <intron i_serial="5" don_prob="0.720" acc_prob="0.989">
            <gDNA_intron_boundary i_start="107418" i_stop="107276" i_length="143"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="107275" e_stop="107226" e_length="50"/>
          </exon>
          <intron i_serial="6" don_prob="0.923" acc_prob="0.995">
            <gDNA_intron_boundary i_start="107225" i_stop="107078" i_length="148"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="107077" e_stop="106985" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.952" acc_prob="0.999">
            <gDNA_intron_boundary i_start="106984" i_stop="106170" i_length="815"/>
          </intron>
          <exon e_serial="8" e_score="0.989">
            <gDNA_exon_boundary e_start="106169" e_stop="105520" e_length="650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108869" stop="108672"/>
              <exon start="108475" stop="108384"/>
              <exon start="107957" stop="107846"/>
              <exon start="107764" stop="107682"/>
              <exon start="107552" stop="107471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108471" stop="108384"/>
              <exon start="107957" stop="107846"/>
              <exon start="107764" stop="107682"/>
              <exon start="107552" stop="107434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107545" stop="107419"/>
              <exon start="107275" stop="107226"/>
              <exon start="107077" stop="106985"/>
              <exon start="106169" stop="105520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703501" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTATGTATAACTCTCACTCAATCTTCACCCTTTTCACCAAAACTTTATTATTCATCAAAACCCCTTCTTCAGAAATCACATAGAATCTCTATTGCCCCATTTCTCAAATTTCAAGATTCAGCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAA : GGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAG : GCAGTTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGC : TATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATG : ATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTAGCAATGTCTGCTTTCAATGGTGAGCCGCCACAAAGAGAG : ACTGATGCGCTTGCTCGGTTACTCCCATTGATAGGCTCCTCAAGTATCAG : CACTGCTTCTCTGCTGGGCATTACCGGTGTACTTGCTCCAATTCTCGAGGAGACTGTGTTTAGAGGATTTTTTATGGTCTCTCTGACTAAGTG : GGTACCTACACCGCTTGCAGCGGTTATTAGTGGTGCTGTATTTGCTCTTGCACATCTCACTCCTGGACAATTTCCTCAGTTGTTTGTTCTTGGTATTGCTTCCATTTTCTTAAATGTATACGACACTGAACGAAAGTAGAGGAAAAGCAGAAATTACAAAAAGGAATAACATAATTGGGTTTTACTTCTGAAAGTTCTCAAAAAGATCTATTTATGAAGGAGAAAATAGTTATAGTAAGAATTGATTTTACCTTGTAAGACATGATCAACAACTTTCTGTAGTTTTTGAGCTTTTATTCAATTTTAGAGGAATGAAATGAATTCAAACATGGTAAAAATGGATACAAAGGGTTCATGTAGTGTACCTCTACTAGTTTGGAATTGAAGCACCGTTGAGGCAAATACTTAAATTGATTCTACCCTTTCTTATAGTGCATTTTTCTTCATGTTTAATCTGAGCTGAAAAATGACATGCTTTCAGGGACTGCTCTGGGTTTTTCTTATGCTCAAACGCGAAACCTCCTAACCCCAATCACAATTCATGCTTTATGGAACTCTGGTGTTATTTTGCTTCTTACCTTCCTTCAGGTAATCTGTTCCTCATTGTCATTTAAAGCATGGCAACAGTATTTGTTGCCATGTTGCTTTCT</gDNA_template>
            <first_frame> N  L  C  I  T  L  T  Q  S  S  P  F  S  P  K  L  Y  Y  S  S  K  P  L  L  Q  K  S  H  R  I  S  I  A  P  F  L  K  F  Q  D  S  A  P  S  Q  G  S  T  R  G  F  T  T  I  C  F  S  S  P  R  N  G  P  G  Y  K  :  G  G  G  P  D  W  P  I  L  R  R  W  D  V  P  W  N  W  Q  T  V  S  L  S  S  L  A  C  G  L  R :   Q  F  C  F  D  R  T  N  R  G  S  V  N  T  L  C  R  T  *  C  R  S  I  E  L  G  R  E  G  *  N  F  V  R  *  S  S  :  Y  N  N  C  S  C  A  N  S  P  L  C  S  H  Q  V  I  S  T  T  S  *  *  H  I  S  L  * :   S  E  G  T  F  Q  S  P  E  R  M  A  F  V  G  W  N  W  S  R  G  S  N  R  C  N  C  F  N  R  S  S  N  V  C  F  Q  W  *  A  A  T  K  R   : D  *  C  A  C  S  V  T  P  I  D  R  L  L  K  Y  Q  :  H  C  F  S  A  G  H  Y  R  C  T  C  S  N  S  R  G  D  C  V  *  R  I  F  Y  G  L  S  D  *  V  :  G  T  Y  T  A  C  S  G  Y  *  W  C  C  I  C  S  C  T  S  H  S  W  T  I  S  S  V  V  C  S  W  Y  C  F  H  F  L  K  C  I  R  H  *  T  K  V  E  E  K  Q  K  L  Q  K  G  I  T  *  L  G  F  T  S  E  S  S  Q  K  D  L  F  M  K  E  K  I  V  I  V  R  I  D  F  T  L  *  D  M  I  N  N  F  L  *  F  L  S  F  Y  S  I  L  E  E  *  N  E  F  K  H  G  K  N  G  Y  K  G  F  M  *  C  T  S  T  S  L  E  L  K  H  R  *  G  K  Y  L  N  *  F  Y  P  F  L  *  C  I  F  L  H  V  *  S  E  L  K  N  D  M  L  S  G  T  A  L  G  F  S  Y  A  Q  T  R  N  L  L  T  P  I  T  I  H  A  L  W  N  S  G  V  I  L  L  L  T  F  L  Q  V  I  C  S  S  L  S  F  K  A  W  Q  Q  Y  L  L  P  C  C  F   </first_frame>
            <second_frame>  I  Y  V  *  L  S  L  N  L  H  P  F  H  Q  N  F  I  I  H  Q  N  P  F  F  R  N  H  I  E  S  L  L  P  H  F  S  N  F  K  I  Q  L  L  V  K  V  L  Q  E  G  S  L  L  Y  V  F  L  V  P  E  M  V  L  V  I  K :   E  V  D  L  I  G  Q  F  *  D  A  G  M  C  H  G  I  G  K  L  F  H  F  L  H  L  H  V  D  *   : G  S  F  V  L  T  G  L  I  E  A  A  S  I  P  Y  V  G  L  D  V  E  A  L  S  L  D  E  K  A  E  I  L  F  A  D  Q  A :   I  T  T  A  V  V  L  I  V  L  Y  A  L  T  K  S  S  Q  P  L  P  D  D  I  Y  R  Y   : D  L  K  E  P  F  N  L  Q  R  G  W  L  L  W  A  G  I  G  L  G  G  A  I  G  A  I  A  L  T  G  V  A  M  S  A  F  N  G  E  P  P  Q  R  E  :  T  D  A  L  A  R  L  L  P  L  I  G  S  S  S  I  S :   T  A  S  L  L  G  I  T  G  V  L  A  P  I  L  E  E  T  V  F  R  G  F  F  M  V  S  L  T  K  W :   V  P  T  P  L  A  A  V  I  S  G  A  V  F  A  L  A  H  L  T  P  G  Q  F  P  Q  L  F  V  L  G  I  A  S  I  F  L  N  V  Y  D  T  E  R  K  *  R  K  S  R  N  Y  K  K  E  *  H  N  W  V  L  L  L  K  V  L  K  K  I  Y  L  *  R  R  K  *  L  *  *  E  L  I  L  P  C  K  T  *  S  T  T  F  C  S  F  *  A  F  I  Q  F  *  R  N  E  M  N  S  N  M  V  K  M  D  T  K  G  S  C  S  V  P  L  L  V  W  N  *  S  T  V  E  A  N  T  *  I  D  S  T  L  S  Y  S  A  F  F  F  M  F  N  L  S  *  K  M  T  C  F  Q  G  L  L  W  V  F  L  M  L  K  R  E  T  S  *  P  Q  S  Q  F  M  L  Y  G  T  L  V  L  F  C  F  L  P  S  F  R  *  S  V  P  H  C  H  L  K  H  G  N  S  I  C  C  H  V  A  F  </second_frame>
            <third_frame>   F  M  Y  N  S  H  S  I  F  T  L  F  T  K  T  L  L  F  I  K  T  P  S  S  E  I  T  *  N  L  Y  C  P  I  S  Q  I  S  R  F  S  S  *  S  R  F  Y  K  R  V  H  Y  Y  M  F  F  *  S  Q  K  W  S  W  L  *   : R  R  W  T  *  L  A  N  F  E  T  L  G  C  A  M  E  L  A  N  C  F  T  F  F  T  C  M  W  I  K  :  A  V  L  F  *  Q  D  *  S  R  Q  R  Q  Y  P  M  *  D  L  M  *  K  H  *  A  W  T  R  R  L  K  F  C  S  L  I  K   : L  *  Q  L  Q  L  C  *  *  S  F  M  L  S  P  S  H  L  N  H  F  L  M  T  Y  I  V  M  :  I  *  R  N  L  S  I  S  R  E  D  G  F  C  G  L  E  L  V  *  G  E  Q  *  V  Q  L  L  *  Q  E  *  Q  C  L  L  S  M  V  S  R  H  K  E  R :   L  M  R  L  L  G  Y  S  H  *  *  A  P  Q  V  S   : A  L  L  L  C  W  A  L  P  V  Y  L  L  Q  F  S  R  R  L  C  L  E  D  F  L  W  S  L  *  L  S   : G  Y  L  H  R  L  Q  R  L  L  V  V  L  Y  L  L  L  H  I  S  L  L  D  N  F  L  S  C  L  F  L  V  L  L  P  F  S  *  M  Y  T  T  L  N  E  S  R  G  K  A  E  I  T  K  R  N  N  I  I  G  F  Y  F  *  K  F  S  K  R  S  I  Y  E  G  E  N  S  Y  S  K  N  *  F  Y  L  V  R  H  D  Q  Q  L  S  V  V  F  E  L  L  F  N  F  R  G  M  K  *  I  Q  T  W  *  K  W  I  Q  R  V  H  V  V  Y  L  Y  *  F  G  I  E  A  P  L  R  Q  I  L  K  L  I  L  P  F  L  I  V  H  F  S  S  C  L  I  *  A  E  K  *  H  A  F  R  D  C  S  G  F  F  L  C  S  N  A  K  P  P  N  P  N  H  N  S  C  F  M  E  L  W  C  Y  F  A  S  Y  L  P  S  G  N  L  F  L  I  V  I  *  S  M  A  T  V  F  V  A  M  L  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108384" stop="107846"/>
                    <exon start="107764" stop="107682"/>
                    <exon start="107552" stop="107419"/>
                    <exon start="107275" stop="107226"/>
                    <exon start="107077" stop="106985"/>
                    <exon start="106169" stop="106031"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSFVLTGLIEAASIPYVGLDVEALSLDEKAEILFADQAITTAVVLIVLYALTKSSQPLPDDIYRYDLKEPFNLQRGWLLWAGIGLGGAIGAIALTGVAMSAFNGEPPQRETDALARLLPLIGSSSISTASLLGITGVLAPILEETVFRGFFMVSLTKWVPTPLAAVISGAVFALAHLTPGQFPQLFVLGIASIFLNVYDTERK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108856" stop="108672"/>
                    <exon start="108475" stop="108448"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSLNLHPFHQNFIIHQNPFFRNHIESLLPHFSNFKIQLLVKVLQEGSLLYVFLVPEMVLVIKEVDLIGQF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105716" stop="105522"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SELKNDMLSGTALGFSYAQTRNLLTPITIHALWNSGVILLLTFLQVICSSLSFKAWQQYLLPCCF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="108416" e_stop="108388"/>
            <exon e_start="107957" e_stop="107846"/>
            <exon e_start="107764" e_stop="107682"/>
            <exon e_start="107552" e_stop="107419"/>
            <exon e_start="107275" e_stop="107226"/>
            <exon e_start="107077" e_stop="106985"/>
            <exon e_start="106169" e_stop="105520"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.564" e_score="0.931"/>
          <exon-intron don_prob="0.513" acc_prob="0.980" e_score="0.920"/>
          <exon-intron don_prob="0.990" acc_prob="0.814" e_score="0.988"/>
          <exon-intron don_prob="0.720" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="108416" e_stop="108388" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.564">
            <gDNA_intron_boundary i_start="108387" i_stop="107958" i_length="430"/>
          </intron>
          <exon e_serial="2" e_score="0.920">
            <gDNA_exon_boundary e_start="107957" e_stop="107846" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.513" acc_prob="0.980">
            <gDNA_intron_boundary i_start="107845" i_stop="107765" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="107764" e_stop="107682" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.814">
            <gDNA_intron_boundary i_start="107681" i_stop="107553" i_length="129"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="107552" e_stop="107419" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.720" acc_prob="0.989">
            <gDNA_intron_boundary i_start="107418" i_stop="107276" i_length="143"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="107275" e_stop="107226" e_length="50"/>
          </exon>
          <intron i_serial="5" don_prob="0.923" acc_prob="0.995">
            <gDNA_intron_boundary i_start="107225" i_stop="107078" i_length="148"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="107077" e_stop="106985" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.952" acc_prob="0.999">
            <gDNA_intron_boundary i_start="106984" i_stop="106170" i_length="815"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="106169" e_stop="105520" e_length="650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108416" stop="108388"/>
              <exon start="107957" stop="107846"/>
              <exon start="107764" stop="107682"/>
              <exon start="107552" stop="107419"/>
              <exon start="107275" stop="107226"/>
              <exon start="107077" stop="106985"/>
              <exon start="106169" stop="106078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107545" stop="107419"/>
              <exon start="107275" stop="107226"/>
              <exon start="107077" stop="106985"/>
              <exon start="106169" stop="105520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703501" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTTCACTTTCTTCACTTGCATGTGGAT : GCAGTTTTGTTTTGACAGGACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGC : TATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATG : ATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTAGCAATGTCTGCTTTCAATGGTGAGCCGCCACAAAGAGAG : ACTGATGCGCTTGCTCGGTTACTCCCATTGATAGGCTCCTCAAGTATCAG : CACTGCTTCTCTGCTGGGCATTACCGGTGTACTTGCTCCAATTCTCGAGGAGACTGTGTTTAGAGGATTTTTTATGGTCTCTCTGACTAAGTG : GGTACCTACACCGCTTGCAGCGGTTATTAGTGGTGCTGTATTTGCTCTTGCACATCTCACTCCTGGACAATTTCCTCAGTTGTTTGTTCTTGGTATTGCTTCCATTTTCTTAAATGTATACGACACTGAACGAAAGTAGAGGAAAAGCAGAAATTACAAAAAGGAATAACATAATTGGGTTTTACTTCTGAAAGTTCTCAAAAAGATCTATTTATGAAGGAGAAAATAGTTATAGTAAGAATTGATTTTACCTTGTAAGACATGATCAACAACTTTCTGTAGTTTTTGAGCTTTTATTCAATTTTAGAGGAATGAAATGAATTCAAACATGGTAAAAATGGATACAAAGGGTTCATGTAGTGTACCTCTACTAGTTTGGAATTGAAGCACCGTTGAGGCAAATACTTAAATTGATTCTACCCTTTCTTATAGTGCATTTTTCTTCATGTTTAATCTGAGCTGAAAAATGACATGCTTTCAGGGACTGCTCTGGGTTTTTCTTATGCTCAAACGCGAAACCTCCTAACCCCAATCACAATTCATGCTTTATGGAACTCTGGTGTTATTTTGCTTCTTACCTTCCTTCAGGTAATCTGTTCCTCATTGTCATTTAAAGCATGGCAACAGTATTTGTTGCCATGTTGCTTTCT</gDNA_template>
            <first_frame> C  F  T  F  F  T  C  M  W  M :   Q  F  C  F  D  R  T  N  R  G  S  V  N  T  L  C  R  T  *  C  R  S  I  E  L  G  R  E  G  *  N  F  V  R  *  S  S  :  Y  N  N  C  S  C  A  N  S  P  L  C  S  H  Q  V  I  S  T  T  S  *  *  H  I  S  L  * :   S  E  G  T  F  Q  S  P  E  R  M  A  F  V  G  W  N  W  S  R  G  S  N  R  C  N  C  F  N  R  S  S  N  V  C  F  Q  W  *  A  A  T  K  R   : D  *  C  A  C  S  V  T  P  I  D  R  L  L  K  Y  Q  :  H  C  F  S  A  G  H  Y  R  C  T  C  S  N  S  R  G  D  C  V  *  R  I  F  Y  G  L  S  D  *  V  :  G  T  Y  T  A  C  S  G  Y  *  W  C  C  I  C  S  C  T  S  H  S  W  T  I  S  S  V  V  C  S  W  Y  C  F  H  F  L  K  C  I  R  H  *  T  K  V  E  E  K  Q  K  L  Q  K  G  I  T  *  L  G  F  T  S  E  S  S  Q  K  D  L  F  M  K  E  K  I  V  I  V  R  I  D  F  T  L  *  D  M  I  N  N  F  L  *  F  L  S  F  Y  S  I  L  E  E  *  N  E  F  K  H  G  K  N  G  Y  K  G  F  M  *  C  T  S  T  S  L  E  L  K  H  R  *  G  K  Y  L  N  *  F  Y  P  F  L  *  C  I  F  L  H  V  *  S  E  L  K  N  D  M  L  S  G  T  A  L  G  F  S  Y  A  Q  T  R  N  L  L  T  P  I  T  I  H  A  L  W  N  S  G  V  I  L  L  L  T  F  L  Q  V  I  C  S  S  L  S  F  K  A  W  Q  Q  Y  L  L  P  C  C  F   </first_frame>
            <second_frame>  V  S  L  S  S  L  A  C  G   : C  S  F  V  L  T  G  L  I  E  A  A  S  I  P  Y  V  G  L  D  V  E  A  L  S  L  D  E  K  A  E  I  L  F  A  D  Q  A :   I  T  T  A  V  V  L  I  V  L  Y  A  L  T  K  S  S  Q  P  L  P  D  D  I  Y  R  Y   : D  L  K  E  P  F  N  L  Q  R  G  W  L  L  W  A  G  I  G  L  G  G  A  I  G  A  I  A  L  T  G  V  A  M  S  A  F  N  G  E  P  P  Q  R  E  :  T  D  A  L  A  R  L  L  P  L  I  G  S  S  S  I  S :   T  A  S  L  L  G  I  T  G  V  L  A  P  I  L  E  E  T  V  F  R  G  F  F  M  V  S  L  T  K  W :   V  P  T  P  L  A  A  V  I  S  G  A  V  F  A  L  A  H  L  T  P  G  Q  F  P  Q  L  F  V  L  G  I  A  S  I  F  L  N  V  Y  D  T  E  R  K  *  R  K  S  R  N  Y  K  K  E  *  H  N  W  V  L  L  L  K  V  L  K  K  I  Y  L  *  R  R  K  *  L  *  *  E  L  I  L  P  C  K  T  *  S  T  T  F  C  S  F  *  A  F  I  Q  F  *  R  N  E  M  N  S  N  M  V  K  M  D  T  K  G  S  C  S  V  P  L  L  V  W  N  *  S  T  V  E  A  N  T  *  I  D  S  T  L  S  Y  S  A  F  F  F  M  F  N  L  S  *  K  M  T  C  F  Q  G  L  L  W  V  F  L  M  L  K  R  E  T  S  *  P  Q  S  Q  F  M  L  Y  G  T  L  V  L  F  C  F  L  P  S  F  R  *  S  V  P  H  C  H  L  K  H  G  N  S  I  C  C  H  V  A  F  </second_frame>
            <third_frame>   F  H  F  L  H  L  H  V  D  :  A  V  L  F  *  Q  D  *  S  R  Q  R  Q  Y  P  M  *  D  L  M  *  K  H  *  A  W  T  R  R  L  K  F  C  S  L  I  K   : L  *  Q  L  Q  L  C  *  *  S  F  M  L  S  P  S  H  L  N  H  F  L  M  T  Y  I  V  M  :  I  *  R  N  L  S  I  S  R  E  D  G  F  C  G  L  E  L  V  *  G  E  Q  *  V  Q  L  L  *  Q  E  *  Q  C  L  L  S  M  V  S  R  H  K  E  R :   L  M  R  L  L  G  Y  S  H  *  *  A  P  Q  V  S   : A  L  L  L  C  W  A  L  P  V  Y  L  L  Q  F  S  R  R  L  C  L  E  D  F  L  W  S  L  *  L  S   : G  Y  L  H  R  L  Q  R  L  L  V  V  L  Y  L  L  L  H  I  S  L  L  D  N  F  L  S  C  L  F  L  V  L  L  P  F  S  *  M  Y  T  T  L  N  E  S  R  G  K  A  E  I  T  K  R  N  N  I  I  G  F  Y  F  *  K  F  S  K  R  S  I  Y  E  G  E  N  S  Y  S  K  N  *  F  Y  L  V  R  H  D  Q  Q  L  S  V  V  F  E  L  L  F  N  F  R  G  M  K  *  I  Q  T  W  *  K  W  I  Q  R  V  H  V  V  Y  L  Y  *  F  G  I  E  A  P  L  R  Q  I  L  K  L  I  L  P  F  L  I  V  H  F  S  S  C  L  I  *  A  E  K  *  H  A  F  R  D  C  S  G  F  F  L  C  S  N  A  K  P  P  N  P  N  H  N  S  C  F  M  E  L  W  C  Y  F  A  S  Y  L  P  S  G  N  L  F  L  I  V  I  *  S  M  A  T  V  F  V  A  M  L  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108415" stop="108388"/>
                    <exon start="107957" stop="107846"/>
                    <exon start="107764" stop="107682"/>
                    <exon start="107552" stop="107419"/>
                    <exon start="107275" stop="107226"/>
                    <exon start="107077" stop="106985"/>
                    <exon start="106169" stop="106031"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSLSSLACGCSFVLTGLIEAASIPYVGLDVEALSLDEKAEILFADQAITTAVVLIVLYALTKSSQPLPDDIYRYDLKEPFNLQRGWLLWAGIGLGGAIGAIALTGVAMSAFNGEPPQRETDALARLLPLIGSSSISTASLLGITGVLAPILEETVFRGFFMVSLTKWVPTPLAAVISGAVFALAHLTPGQFPQLFVLGIASIFLNVYDTERK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105716" stop="105522"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SELKNDMLSGTALGFSYAQTRNLLTPITIHALWNSGVILLLTFLQVICSSLSFKAWQQYLLPCCF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="108802" e_stop="108672"/>
            <exon e_start="108475" e_stop="108384"/>
            <exon e_start="107939" e_stop="107846"/>
            <exon e_start="107764" e_stop="107682"/>
            <exon e_start="107552" e_stop="107419"/>
            <exon e_start="107275" e_stop="107226"/>
            <exon e_start="107077" e_stop="106985"/>
            <exon e_start="106169" e_stop="106078"/>
            <exon e_start="105688" e_stop="105582"/>
            <exon e_start="105471" e_stop="105289"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.918" acc_prob="1.000" e_score="0.939"/>
          <exon-intron don_prob="0.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.513" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.814" e_score="1.000"/>
          <exon-intron don_prob="0.720" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.698" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="108802" e_stop="108672" e_length="131"/>
          </exon>
          <intron i_serial="1" don_prob="0.918" acc_prob="1.000">
            <gDNA_intron_boundary i_start="108671" i_stop="108476" i_length="196"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108475" e_stop="108384" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="108383" i_stop="107940" i_length="444"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107939" e_stop="107846" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="0.513" acc_prob="0.980">
            <gDNA_intron_boundary i_start="107845" i_stop="107765" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="107764" e_stop="107682" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.814">
            <gDNA_intron_boundary i_start="107681" i_stop="107553" i_length="129"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="107552" e_stop="107419" e_length="134"/>
          </exon>
          <intron i_serial="5" don_prob="0.720" acc_prob="0.989">
            <gDNA_intron_boundary i_start="107418" i_stop="107276" i_length="143"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="107275" e_stop="107226" e_length="50"/>
          </exon>
          <intron i_serial="6" don_prob="0.923" acc_prob="0.995">
            <gDNA_intron_boundary i_start="107225" i_stop="107078" i_length="148"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="107077" e_stop="106985" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.952" acc_prob="0.999">
            <gDNA_intron_boundary i_start="106984" i_stop="106170" i_length="815"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="106169" e_stop="106078" e_length="92"/>
          </exon>
          <intron i_serial="8" don_prob="0.698" acc_prob="0.956">
            <gDNA_intron_boundary i_start="106077" i_stop="105689" i_length="389"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="105688" e_stop="105582" e_length="107"/>
          </exon>
          <intron i_serial="9" don_prob="0.931" acc_prob="0.992">
            <gDNA_intron_boundary i_start="105581" i_stop="105472" i_length="110"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="105471" e_stop="105289" e_length="183"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108802" stop="108672"/>
              <exon start="108475" stop="108384"/>
              <exon start="107939" stop="107846"/>
              <exon start="107764" stop="107682"/>
              <exon start="107552" stop="107500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108429" stop="108384"/>
              <exon start="107939" stop="107846"/>
              <exon start="107764" stop="107682"/>
              <exon start="107552" stop="107419"/>
              <exon start="107275" stop="107226"/>
              <exon start="107077" stop="106985"/>
              <exon start="106169" stop="106078"/>
              <exon start="105688" stop="105582"/>
              <exon start="105471" stop="105289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702933" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTCAGAAATCACATAGAATCTCTATTGCCCCATTTCTCAAATTTCAAGATTCAGCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAA : GGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAG : GACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGC : TATAACAACTGCAGTTGTGCTAATAGTCCTTTATGCTCTCACCAAGTCATCTCAACCACTTCCTGATGACATATATCGTTATG : ATCTGAAGGAACCTTTCAATCTCCAGAGAGGATGGCTTTTGTGGGCTGGAATTGGTCTAGGGGGAGCAATAGGTGCAATTGCTTTAACAGGAGTAGCAATGTCTGCTTTCAATGGTGAGCCGCCACAAAGAGAG : ACTGATGCGCTTGCTCGGTTACTCCCATTGATAGGCTCCTCAAGTATCAG : CACTGCTTCTCTGCTGGGCATTACCGGTGTACTTGCTCCAATTCTCGAGGAGACTGTGTTTAGAGGATTTTTTATGGTCTCTCTGACTAAGTG : GGTACCTACACCGCTTGCAGCGGTTATTAGTGGTGCTGTATTTGCTCTTGCACATCTCACTCCTGGACAATTTCCTCAGTTGTTTGTTCTTG : GGACTGCTCTGGGTTTTTCTTATGCTCAAACGCGAAACCTCCTAACCCCAATCACAATTCATGCTTTATGGAACTCTGGTGTTATTTTGCTTCTTACCTTCCTTCAG : CTCCAAGGATATGATATCAGGGAAATAATACAAGGAACTTGACTTGGGCACCATAATTCTCTGGACAAAGTCGTCTTCATCAGCTTGTCGCAGTTGCTGAACGTAGGAACGAATCTGGTTTTATTTTCTGTAATTTAGGCCAAATGCTGGTTGGAGCTTGCAAGTAATGTGGGAAGCCGAAAA</gDNA_template>
            <first_frame> F  F  R  N  H  I  E  S  L  L  P  H  F  S  N  F  K  I  Q  L  L  V  K  V  L  Q  E  G  S  L  L  Y  V  F  L  V  P  E  M  V  L  V  I  K :   E  V  D  L  I  G  Q  F  *  D  A  G  M  C  H  G  I  G  K  L  F  H  F  L  H  L  H  V  D  *   : G  L  I  E  A  A  S  I  P  Y  V  G  L  D  V  E  A  L  S  L  D  E  K  A  E  I  L  F  A  D  Q  A :   I  T  T  A  V  V  L  I  V  L  Y  A  L  T  K  S  S  Q  P  L  P  D  D  I  Y  R  Y   : D  L  K  E  P  F  N  L  Q  R  G  W  L  L  W  A  G  I  G  L  G  G  A  I  G  A  I  A  L  T  G  V  A  M  S  A  F  N  G  E  P  P  Q  R  E  :  T  D  A  L  A  R  L  L  P  L  I  G  S  S  S  I  S :   T  A  S  L  L  G  I  T  G  V  L  A  P  I  L  E  E  T  V  F  R  G  F  F  M  V  S  L  T  K  W :   V  P  T  P  L  A  A  V  I  S  G  A  V  F  A  L  A  H  L  T  P  G  Q  F  P  Q  L  F  V  L   : G  T  A  L  G  F  S  Y  A  Q  T  R  N  L  L  T  P  I  T  I  H  A  L  W  N  S  G  V  I  L  L  L  T  F  L  Q  :  L  Q  G  Y  D  I  R  E  I  I  Q  G  T  *  L  G  H  H  N  S  L  D  K  V  V  F  I  S  L  S  Q  L  L  N  V  G  T  N  L  V  L  F  S  V  I  *  A  K  C  W  L  E  L  A  S  N  V  G  S  R  K </first_frame>
            <second_frame>  S  S  E  I  T  *  N  L  Y  C  P  I  S  Q  I  S  R  F  S  S  *  S  R  F  Y  K  R  V  H  Y  Y  M  F  F  *  S  Q  K  W  S  W  L  *   : R  R  W  T  *  L  A  N  F  E  T  L  G  C  A  M  E  L  A  N  C  F  T  F  F  T  C  M  W  I  K  :  D  *  S  R  Q  R  Q  Y  P  M  *  D  L  M  *  K  H  *  A  W  T  R  R  L  K  F  C  S  L  I  K   : L  *  Q  L  Q  L  C  *  *  S  F  M  L  S  P  S  H  L  N  H  F  L  M  T  Y  I  V  M  :  I  *  R  N  L  S  I  S  R  E  D  G  F  C  G  L  E  L  V  *  G  E  Q  *  V  Q  L  L  *  Q  E  *  Q  C  L  L  S  M  V  S  R  H  K  E  R :   L  M  R  L  L  G  Y  S  H  *  *  A  P  Q  V  S   : A  L  L  L  C  W  A  L  P  V  Y  L  L  Q  F  S  R  R  L  C  L  E  D  F  L  W  S  L  *  L  S   : G  Y  L  H  R  L  Q  R  L  L  V  V  L  Y  L  L  L  H  I  S  L  L  D  N  F  L  S  C  L  F  L  :  G  L  L  W  V  F  L  M  L  K  R  E  T  S  *  P  Q  S  Q  F  M  L  Y  G  T  L  V  L  F  C  F  L  P  S  F  S :   S  K  D  M  I  S  G  K  *  Y  K  E  L  D  L  G  T  I  I  L  W  T  K  S  S  S  S  A  C  R  S  C  *  T  *  E  R  I  W  F  Y  F  L  *  F  R  P  N  A  G  W  S  L  Q  V  M  W  E  A  E   </second_frame>
            <third_frame>   L  Q  K  S  H  R  I  S  I  A  P  F  L  K  F  Q  D  S  A  P  S  Q  G  S  T  R  G  F  T  T  I  C  F  S  S  P  R  N  G  P  G  Y  K  :  G  G  G  P  D  W  P  I  L  R  R  W  D  V  P  W  N  W  Q  T  V  S  L  S  S  L  A  C  G  L  R :   T  N  R  G  S  V  N  T  L  C  R  T  *  C  R  S  I  E  L  G  R  E  G  *  N  F  V  R  *  S  S  :  Y  N  N  C  S  C  A  N  S  P  L  C  S  H  Q  V  I  S  T  T  S  *  *  H  I  S  L  * :   S  E  G  T  F  Q  S  P  E  R  M  A  F  V  G  W  N  W  S  R  G  S  N  R  C  N  C  F  N  R  S  S  N  V  C  F  Q  W  *  A  A  T  K  R   : D  *  C  A  C  S  V  T  P  I  D  R  L  L  K  Y  Q  :  H  C  F  S  A  G  H  Y  R  C  T  C  S  N  S  R  G  D  C  V  *  R  I  F  Y  G  L  S  D  *  V  :  G  T  Y  T  A  C  S  G  Y  *  W  C  C  I  C  S  C  T  S  H  S  W  T  I  S  S  V  V  C  S  W :   D  C  S  G  F  F  L  C  S  N  A  K  P  P  N  P  N  H  N  S  C  F  M  E  L  W  C  Y  F  A  S  Y  L  P  S   : A  P  R  I  *  Y  Q  G  N  N  T  R  N  L  T  W  A  P  *  F  S  G  Q  S  R  L  H  Q  L  V  A  V  A  E  R  R  N  E  S  G  F  I  F  C  N  L  G  Q  M  L  V  G  A  C  K  *  C  G  K  P  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108384" stop="107846"/>
                    <exon start="107764" stop="107682"/>
                    <exon start="107552" stop="107419"/>
                    <exon start="107275" stop="107226"/>
                    <exon start="107077" stop="106985"/>
                    <exon start="106169" stop="106078"/>
                    <exon start="105688" stop="105582"/>
                    <exon start="105471" stop="105430"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLIEAASIPYVGLDVEALSLDEKAEILFADQAITTAVVLIVLYALTKSSQPLPDDIYRYDLKEPFNLQRGWLLWAGIGLGGAIGAIALTGVAMSAFNGEPPQRETDALARLLPLIGSSSISTASLLGITGVLAPILEETVFRGFFMVSLTKWVPTPLAAVISGAVFALAHLTPGQFPQLFVLGTALGFSYAQTRNLLTPITIHALWNSGVILLLTFLQLQGYDIREIIQGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="108884" e_stop="108672"/>
            <exon e_start="108475" e_stop="108384"/>
            <exon e_start="107939" e_stop="107846"/>
            <exon e_start="107623" e_stop="107548"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.918" acc_prob="1.000" e_score="0.869"/>
          <exon-intron don_prob="0.000" acc_prob="0.983" e_score="0.989"/>
          <exon-intron don_prob="0.513" acc_prob="0.000" e_score="0.926"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.869">
            <gDNA_exon_boundary e_start="108884" e_stop="108672" e_length="213"/>
          </exon>
          <intron i_serial="1" don_prob="0.918" acc_prob="1.000">
            <gDNA_intron_boundary i_start="108671" i_stop="108476" i_length="196"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="108475" e_stop="108384" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="108383" i_stop="107940" i_length="444"/>
          </intron>
          <exon e_serial="3" e_score="0.926">
            <gDNA_exon_boundary e_start="107939" e_stop="107846" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="0.513" acc_prob="0.000">
            <gDNA_intron_boundary i_start="107845" i_stop="107624" i_length="222"/>
          </intron>
          <exon e_serial="4" e_score="0.974">
            <gDNA_exon_boundary e_start="107623" e_stop="107548" e_length="76"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108884" stop="108672"/>
              <exon start="108475" stop="108384"/>
              <exon start="107939" stop="107846"/>
              <exon start="107623" stop="107548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469133" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAGAATGGCTGGCAATTTATGTATAACTCTCACTCAATCTTCACCCTTTTCACCAAAACTTTATTATTCATCAAAACCCCTTCTTCAGAAATCACATAGAATCTCTATTGCCCCATTTCTCAAATTTCAAGATTCAGCTCCTAGTCAAGGTTCTACAAGAGGGTTCACTACTATATGTTTTTCTAGTCCCAGAAATGGTCCTGGTTATAAA : GGAGGTGGACCTGATTGGCCAATTTTGAGACGCTGGGATGTGCCATGGAATTGGCAAACTGTTTCACTTTCTTCACTTGCATGTGGATTAAG : GACTAATCGAGGCAGCGTCAATACCCTATGTAGGACTTGATGTAGAAGCATTGAGCTTGGACGAGAAGGCTGAAATTTTGTTCGCTGATCAAGC : AAAACTGGATTGCAGTTTCCTCTACTCTAAAAGATTACAGTGTGGTTGATTATGATCTGTTAGTATTCCAGATCTG</gDNA_template>
            <first_frame> *  R  M  A  G  N  L  C  I  T  L  T  Q  S  S  P  F  S  P  K  L  Y  Y  S  S  K  P  L  L  Q  K  S  H  R  I  S  I  A  P  F  L  K  F  Q  D  S  A  P  S  Q  G  S  T  R  G  F  T  T  I  C  F  S  S  P  R  N  G  P  G  Y  K  :  G  G  G  P  D  W  P  I  L  R  R  W  D  V  P  W  N  W  Q  T  V  S  L  S  S  L  A  C  G  L  R :   T  N  R  G  S  V  N  T  L  C  R  T  *  C  R  S  I  E  L  G  R  E  G  *  N  F  V  R  *  S  S  :  K  T  G  L  Q  F  P  L  L  *  K  I  T  V  W  L  I  M  I  C  *  Y  S  R  S  </first_frame>
            <second_frame>  K  E  W  L  A  I  Y  V  *  L  S  L  N  L  H  P  F  H  Q  N  F  I  I  H  Q  N  P  F  F  R  N  H  I  E  S  L  L  P  H  F  S  N  F  K  I  Q  L  L  V  K  V  L  Q  E  G  S  L  L  Y  V  F  L  V  P  E  M  V  L  V  I  K :   E  V  D  L  I  G  Q  F  *  D  A  G  M  C  H  G  I  G  K  L  F  H  F  L  H  L  H  V  D  *   : G  L  I  E  A  A  S  I  P  Y  V  G  L  D  V  E  A  L  S  L  D  E  K  A  E  I  L  F  A  D  Q  A :   K  L  D  C  S  F  L  Y  S  K  R  L  Q  C  G  *  L  *  S  V  S  I  P  D  L </second_frame>
            <third_frame>   K  N  G  W  Q  F  M  Y  N  S  H  S  I  F  T  L  F  T  K  T  L  L  F  I  K  T  P  S  S  E  I  T  *  N  L  Y  C  P  I  S  Q  I  S  R  F  S  S  *  S  R  F  Y  K  R  V  H  Y  Y  M  F  F  *  S  Q  K  W  S  W  L  *   : R  R  W  T  *  L  A  N  F  E  T  L  G  C  A  M  E  L  A  N  C  F  T  F  F  T  C  M  W  I  K  :  D  *  S  R  Q  R  Q  Y  P  M  *  D  L  M  *  K  H  *  A  W  T  R  R  L  K  F  C  S  L  I  K   : Q  N  W  I  A  V  S  S  T  L  K  D  Y  S  V  V  D  Y  D  L  L  V  F  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108881" stop="108672"/>
                    <exon start="108475" stop="108384"/>
                    <exon start="107939" stop="107900"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMAGNLCITLTQSSPFSPKLYYSSKPLLQKSHRISIAPFLKFQDSAPSQGSTRGFTTICFSSPRNGPGYKGGGPDWPILRRWDVPWNWQTVSLSSLACGLRTNRGSVNTLCRT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="113821" PGL_stop="120141"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113821" e_stop="114142"/>
            <exon e_start="115094" e_stop="115745"/>
            <exon e_start="115862" e_stop="116072"/>
            <exon e_start="116217" e_stop="116511"/>
            <exon e_start="117656" e_stop="118030"/>
            <exon e_start="118851" e_stop="118928"/>
            <exon e_start="119467" e_stop="120085"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.669" acc_prob="0.993" e_score="0.950"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="0.989"/>
          <exon-intron don_prob="0.991" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.966" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="113821" e_stop="114142" e_length="322"/>
          </exon>
          <intron i_serial="1" don_prob="0.669" acc_prob="0.993">
            <gDNA_intron_boundary i_start="114143" i_stop="115093" i_length="951"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="115094" e_stop="115745" e_length="652"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="115746" i_stop="115861" i_length="116"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115862" e_stop="116072" e_length="211"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.994">
            <gDNA_intron_boundary i_start="116073" i_stop="116216" i_length="144"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116217" e_stop="116511" e_length="295"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.994">
            <gDNA_intron_boundary i_start="116512" i_stop="117655" i_length="1144"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="117656" e_stop="118030" e_length="375"/>
          </exon>
          <intron i_serial="5" don_prob="0.960" acc_prob="0.966">
            <gDNA_intron_boundary i_start="118031" i_stop="118850" i_length="820"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="118851" e_stop="118928" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.974">
            <gDNA_intron_boundary i_start="118929" i_stop="119466" i_length="538"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="119467" e_stop="120085" e_length="619"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113821" stop="114142"/>
              <exon start="115094" stop="115477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113824" stop="114142"/>
              <exon start="115094" stop="115138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113828" stop="114142"/>
              <exon start="115094" stop="115200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113828" stop="114142"/>
              <exon start="115094" stop="115198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113835" stop="114142"/>
              <exon start="115094" stop="115488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113849" stop="114142"/>
              <exon start="115094" stop="115308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114116" stop="114142"/>
              <exon start="115094" stop="115745"/>
              <exon start="115862" stop="115910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115473" stop="115745"/>
              <exon start="115862" stop="116072"/>
              <exon start="116217" stop="116232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115622" stop="115745"/>
              <exon start="115862" stop="116072"/>
              <exon start="116217" stop="116511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115660" stop="115745"/>
              <exon start="115862" stop="116072"/>
              <exon start="116217" stop="116448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115725" stop="115745"/>
              <exon start="115862" stop="116072"/>
              <exon start="116217" stop="116511"/>
              <exon start="117656" stop="117945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115946" stop="116072"/>
              <exon start="116217" stop="116511"/>
              <exon start="117656" stop="117731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115970" stop="116072"/>
              <exon start="116217" stop="116511"/>
              <exon start="117656" stop="117733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117944" stop="118030"/>
              <exon start="118851" stop="118928"/>
              <exon start="119467" stop="120080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577673" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118013" stop="118030"/>
              <exon start="118851" stop="118928"/>
              <exon start="119467" stop="119989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118013" stop="118030"/>
              <exon start="118851" stop="118928"/>
              <exon start="119467" stop="119883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119715" stop="120073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119717" stop="120085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119797" stop="120085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229418" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACAACCAAACCCGAGTTTTCACTTTCTTCAAAGTACTACCATTTTTTCCCGTCTTTGTATGATAGATAGAGAGAAGGAGACGTGTGATTTTGATGTATTTGGTTAAAAAAATCGTCAAGAAACGATTTTTATGAATTAAAGTTTGGATTTTTGAAGTGGGGTTTGTGTTAAATTTGTTTCTTGATTAATTTTTTTTGGAATTTTTTAAGGACTGGACCCATAACCCATTGCTGTCTGTTGATAAAGGAAAAGAAATAAAGGGGAAAGAAGAGATTTTGGAGATCATTTAAGGAATTGTTGGAATATTTTCATGCCATTG : GGCTGCAATGGCGGGCAAAAACTCAGGGGATAATAGGACTAGGACTTCTGTATCAATATTTATAATAGCTGGTCTATGCTGCTTCTTCTATTTACTTGGAGCATGGCAAAGAAGTGGTTTTGGGAAAGGAGATAGTATAGCAGTGGCTGTCACCAAGACTGCTGGTGAGAATTGCGATGTACTACCAAATCTCAATTTTGAAACTCGTCATGCTGGCGAAGCAGGTGGTACTGATGAGTCGGAAGAAGTCGAGGAACTTAAGCCATGTGATCCTCAGTACACTGATTATACACCATGTCAAGATCAAAAGCGTGCTATGACTTTCCCAAGGGAAAATATGAACTACCGAGAAAGGCATTGTCCACCTCAAGAAGAGAAGTTACATTGCCTTATTCCAGCACCTAAGGGATATGTTACCCCATTTCCGTGGCCAAAAAGTCGGGATTATGTTCCCTATGCCAATGCTCCATATAAGAGCTTGACTGTTGAGAAAGCTATTCAGAATTGGGTTCAATATGAGGGTAATGTGTTTAGGTTCCCAGGAGGAGGGACACAATTCCCTCAAGGAGCAGATAAGTATATTGATCAGCTTGCTTCAGTCGTCCCAATCGAGAATGGGACAGTTCGGACTGCTTTGGACACTGGTTGTGGG : GTTGCAAGTTGGGGTGCTTATCTTTGGAAAAGGAATGTCATAGCAATGTCATTTGCCCCAAGAGACTCACATGAAGCTCAGGTTCAGTTTGCTCTGGAAAGGGGTGTGCCTGCTGTTATTGGTGTACTAGGAACAATCAAAATGCCATATCCATCTAAAGCCTTTGATATGGCCCATTGTTCTCGTTGTCTAATCCCATGGGGAGCTGCTG : ATGGAATCCTCATGATGGAAGTTGACCGAGTTCTTAGACCTGGAGGCTACTGGGTGCTTTCTGGACCTCCTATCAACTGGAAGGTCAATTTTAAGGCCTGGCAACGCCCCAAGGAGGATCTTGAGGAAGAACAAAGGAAGATTGAAGAGGCTGCTAAACTTCTTTGCTGGGAGAAGATATCTGAGAAGGGAGAGACTGCTATTTGGCAGAAAAGAAAGGATAGTGCCTCATGCCGTTCTGCACAAGAAAATTCTGCAGCCAAAGTTTGTAAACCTTCTGATCCAGATAGTGTCTG : GTACAACAAAATGGAAATGTGCATAACACCAAACAATGGTAATGGTGGAGACGAGAGTCTAAAGCCATTCCCTGAGAGACTTTATGCTGTTCCTCCAAGAATTGCCAATGGATTAGTTTCTGGAGTGTCTGTTGAGAAATATCAAGAAGACAGCAAGAAATGGAAGAAACACGTAAGTGCTTATAAGAAGATCAACAAACTCCTGGACACTGGAAGGTACCGCAACATTATGGACATGAATGCTGGACTAGGAGGTTTTGCAGCAGCACTTCACGATCCCAAGTTTTGGGTTATGAATGTTATGCCAACAATAGCTGAGAAGAATACTTTGGGAGTTGTATTCGAACGGGGACTGATTGGTATCTATCATGACTG : GTGTGAAGCATTTTCTACATACCCAAGGACATATGATCTCATTCATGCTAATGGCCTTTTCAGTTTATATAAGGACAA : GTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGAACTTCAAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTCAAACAATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCATATGAACTCGTATGGATCAGGAAGACCAACATCTTATGAATACAAAATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGAAGCTTTTTGAAAGTCCTTTATAAACATTTCTTCCCTCGATATATAGACTCTGTAATGTGTTGTTTAATTAAAGTGGAAATTTGATCTAGTTGATTTCTGATATG</gDNA_template>
            <first_frame> K  T  T  K  P  E  F  S  L  S  S  K  Y  Y  H  F  F  P  S  L  Y  D  R  *  R  E  G  D  V  *  F  *  C  I  W  L  K  K  S  S  R  N  D  F  Y  E  L  K  F  G  F  L  K  W  G  L  C  *  I  C  F  L  I  N  F  F  W  N  F  L  R  T  G  P  I  T  H  C  C  L  L  I  K  E  K  K  *  R  G  K  K  R  F  W  R  S  F  K  E  L  L  E  Y  F  H  A  I   : G  L  Q  W  R  A  K  T  Q  G  I  I  G  L  G  L  L  Y  Q  Y  L  *  *  L  V  Y  A  A  S  S  I  Y  L  E  H  G  K  E  V  V  L  G  K  E  I  V  *  Q  W  L  S  P  R  L  L  V  R  I  A  M  Y  Y  Q  I  S  I  L  K  L  V  M  L  A  K  Q  V  V  L  M  S  R  K  K  S  R  N  L  S  H  V  I  L  S  T  L  I  I  H  H  V  K  I  K  S  V  L  *  L  S  Q  G  K  I  *  T  T  E  K  G  I  V  H  L  K  K  R  S  Y  I  A  L  F  Q  H  L  R  D  M  L  P  H  F  R  G  Q  K  V  G  I  M  F  P  M  P  M  L  H  I  R  A  *  L  L  R  K  L  F  R  I  G  F  N  M  R  V  M  C  L  G  S  Q  E  E  G  H  N  S  L  K  E  Q  I  S  I  L  I  S  L  L  Q  S  S  Q  S  R  M  G  Q  F  G  L  L  W  T  L  V  V  G :   L  Q  V  G  V  L  I  F  G  K  G  M  S  *  Q  C  H  L  P  Q  E  T  H  M  K  L  R  F  S  L  L  W  K  G  V  C  L  L  L  L  V  Y  *  E  Q  S  K  C  H  I  H  L  K  P  L  I  W  P  I  V  L  V  V  *  S  H  G  E  L  L  :  M  E  S  S  *  W  K  L  T  E  F  L  D  L  E  A  T  G  C  F  L  D  L  L  S  T  G  R  S  I  L  R  P  G  N  A  P  R  R  I  L  R  K  N  K  G  R  L  K  R  L  L  N  F  F  A  G  R  R  Y  L  R  R  E  R  L  L  F  G  R  K  E  R  I  V  P  H  A  V  L  H  K  K  I  L  Q  P  K  F  V  N  L  L  I  Q  I  V  S   : G  T  T  K  W  K  C  A  *  H  Q  T  M  V  M  V  E  T  R  V  *  S  H  S  L  R  D  F  M  L  F  L  Q  E  L  P  M  D  *  F  L  E  C  L  L  R  N  I  K  K  T  A  R  N  G  R  N  T  *  V  L  I  R  R  S  T  N  S  W  T  L  E  G  T  A  T  L  W  T  *  M  L  D  *  E  V  L  Q  Q  H  F  T  I  P  S  F  G  L  *  M  L  C  Q  Q  *  L  R  R  I  L  W  E  L  Y  S  N  G  D  *  L  V  S  I  M  T   : G  V  K  H  F  L  H  T  Q  G  H  M  I  S  F  M  L  M  A  F  S  V  Y  I  R  T   : S  V  T  F  K  T  F  S  *  R  W  T  V  F  C  V  Q  K  E  L  S  F  *  E  T  M  *  M  Y  *  S  R  *  R  R  *  *  E  A  *  G  G  T  S  N  *  W  I  M  R  T  V  P  L  F  P  K  K  Y  W  L  L  S  N  N  I  G  L  W  V  I  P  T  P  H  P  H  N  E  M  P  P  K  M  L  S  D  H  M  N  S  Y  G  S  G  R  P  T  S  Y  E  Y  K  I  H  G  Y  A  R  R  F  T  P  R  N  F  D  R  A  G  S  L  D  R  *  L  H  G  T  S  L  V  L  M  D  P  *  I  I  P  D  D  L  A  F  I  T  V  F  I  F  F  S  V  P  C  L  V  R  *  *  L  *  K  L  S  Y  M  G  L  L  *  S  F  L  K  V  L  Y  K  H  F  F  P  R  Y  I  D  S  V  M  C  C  L  I  K  V  E  I  *  S  S  *  F  L  I   </first_frame>
            <second_frame>  K  Q  P  N  P  S  F  H  F  L  Q  S  T  T  I  F  S  R  L  C  M  I  D  R  E  K  E  T  C  D  F  D  V  F  G  *  K  N  R  Q  E  T  I  F  M  N  *  S  L  D  F  *  S  G  V  C  V  K  F  V  S  *  L  I  F  F  G  I  F  *  G  L  D  P  *  P  I  A  V  C  *  *  R  K  R  N  K  G  E  R  R  D  F  G  D  H  L  R  N  C  W  N  I  F  M  P  L  :  G  C  N  G  G  Q  K  L  R  G  *  *  D  *  D  F  C  I  N  I  Y  N  S  W  S  M  L  L  L  L  F  T  W  S  M  A  K  K  W  F  W  E  R  R  *  Y  S  S  G  C  H  Q  D  C  W  *  E  L  R  C  T  T  K  S  Q  F  *  N  S  S  C  W  R  S  R  W  Y  *  *  V  G  R  S  R  G  T  *  A  M  *  S  S  V  H  *  L  Y  T  M  S  R  S  K  A  C  Y  D  F  P  K  G  K  Y  E  L  P  R  K  A  L  S  T  S  R  R  E  V  T  L  P  Y  S  S  T  *  G  I  C  Y  P  I  S  V  A  K  K  S  G  L  C  S  L  C  Q  C  S  I  *  E  L  D  C  *  E  S  Y  S  E  L  G  S  I  *  G  *  C  V  *  V  P  R  R  R  D  T  I  P  S  R  S  R  *  V  Y  *  S  A  C  F  S  R  P  N  R  E  W  D  S  S  D  C  F  G  H  W  L  W   : G  C  K  L  G  C  L  S  L  E  K  E  C  H  S  N  V  I  C  P  K  R  L  T  *  S  S  G  S  V  C  S  G  K  G  C  A  C  C  Y  W  C  T  R  N  N  Q  N  A  I  S  I  *  S  L  *  Y  G  P  L  F  S  L  S  N  P  M  G  S  C  * :   W  N  P  H  D  G  S  *  P  S  S  *  T  W  R  L  L  G  A  F  W  T  S  Y  Q  L  E  G  Q  F  *  G  L  A  T  P  Q  G  G  S  *  G  R  T  K  E  D  *  R  G  C  *  T  S  L  L  G  E  D  I  *  E  G  R  D  C  Y  L  A  E  K  K  G  *  C  L  M  P  F  C  T  R  K  F  C  S  Q  S  L  *  T  F  *  S  R  *  C  L  :  V  Q  Q  N  G  N  V  H  N  T  K  Q  W  *  W  W  R  R  E  S  K  A  I  P  *  E  T  L  C  C  S  S  K  N  C  Q  W  I  S  F  W  S  V  C  *  E  I  S  R  R  Q  Q  E  M  E  E  T  R  K  C  L  *  E  D  Q  Q  T  P  G  H  W  K  V  P  Q  H  Y  G  H  E  C  W  T  R  R  F  C  S  S  T  S  R  S  Q  V  L  G  Y  E  C  Y  A  N  N  S  *  E  E  Y  F  G  S  C  I  R  T  G  T  D  W  Y  L  S  *  L  :  V  *  S  I  F  Y  I  P  K  D  I  *  S  H  S  C  *  W  P  F  Q  F  I  *  G  Q  :  V  *  L  S  R  H  S  L  R  D  G  P  Y  F  A  S  R  R  S  C  H  S  K  R  Q  C  R  C  T  D  Q  G  E  E  D  N  R  R  H  E  V  E  L  Q  I  D  G  S  *  G  R  S  P  C  S  R  K  N  T  G  C  C  Q  T  I  L  D  S  G  *  Y  Q  L  H  I  L  T  M  R  C  H  R  R  C  C  L  T  I  *  T  R  M  D  Q  E  D  Q  H  L  M  N  T  K  S  M  V  M  Q  D  V  S  P  L  G  I  L  I  E  Q  G  P  L  T  G  D  S  T  A  H  L  *  S  *  W  I  H  K  L  Y  Q  M  I  *  R  L  *  L  S  S  F  S  S  L  F  H  V  S  L  D  N  D  S  K  N  *  A  T  W  D  Y  Y  E  A  F  *  K  S  F  I  N  I  S  S  L  D  I  *  T  L  *  C  V  V  *  L  K  W  K  F  D  L  V  D  F  *  Y  </second_frame>
            <third_frame>   N  N  Q  T  R  V  F  T  F  F  K  V  L  P  F  F  P  V  F  V  *  *  I  E  R  R  R  R  V  I  L  M  Y  L  V  K  K  I  V  K  K  R  F  L  *  I  K  V  W  I  F  E  V  G  F  V  L  N  L  F  L  D  *  F  F  L  E  F  F  K  D  W  T  H  N  P  L  L  S  V  D  K  G  K  E  I  K  G  K  E  E  I  L  E  I  I  *  G  I  V  G  I  F  S  C  H  W :   A  A  M  A  G  K  N  S  G  D  N  R  T  R  T  S  V  S  I  F  I  I  A  G  L  C  C  F  F  Y  L  L  G  A  W  Q  R  S  G  F  G  K  G  D  S  I  A  V  A  V  T  K  T  A  G  E  N  C  D  V  L  P  N  L  N  F  E  T  R  H  A  G  E  A  G  G  T  D  E  S  E  E  V  E  E  L  K  P  C  D  P  Q  Y  T  D  Y  T  P  C  Q  D  Q  K  R  A  M  T  F  P  R  E  N  M  N  Y  R  E  R  H  C  P  P  Q  E  E  K  L  H  C  L  I  P  A  P  K  G  Y  V  T  P  F  P  W  P  K  S  R  D  Y  V  P  Y  A  N  A  P  Y  K  S  L  T  V  E  K  A  I  Q  N  W  V  Q  Y  E  G  N  V  F  R  F  P  G  G  G  T  Q  F  P  Q  G  A  D  K  Y  I  D  Q  L  A  S  V  V  P  I  E  N  G  T  V  R  T  A  L  D  T  G  C  G  :  V  A  S  W  G  A  Y  L  W  K  R  N  V  I  A  M  S  F  A  P  R  D  S  H  E  A  Q  V  Q  F  A  L  E  R  G  V  P  A  V  I  G  V  L  G  T  I  K  M  P  Y  P  S  K  A  F  D  M  A  H  C  S  R  C  L  I  P  W  G  A  A   : D  G  I  L  M  M  E  V  D  R  V  L  R  P  G  G  Y  W  V  L  S  G  P  P  I  N  W  K  V  N  F  K  A  W  Q  R  P  K  E  D  L  E  E  E  Q  R  K  I  E  E  A  A  K  L  L  C  W  E  K  I  S  E  K  G  E  T  A  I  W  Q  K  R  K  D  S  A  S  C  R  S  A  Q  E  N  S  A  A  K  V  C  K  P  S  D  P  D  S  V  W :   Y  N  K  M  E  M  C  I  T  P  N  N  G  N  G  G  D  E  S  L  K  P  F  P  E  R  L  Y  A  V  P  P  R  I  A  N  G  L  V  S  G  V  S  V  E  K  Y  Q  E  D  S  K  K  W  K  K  H  V  S  A  Y  K  K  I  N  K  L  L  D  T  G  R  Y  R  N  I  M  D  M  N  A  G  L  G  G  F  A  A  A  L  H  D  P  K  F  W  V  M  N  V  M  P  T  I  A  E  K  N  T  L  G  V  V  F  E  R  G  L  I  G  I  Y  H  D  W :   C  E  A  F  S  T  Y  P  R  T  Y  D  L  I  H  A  N  G  L  F  S  L  Y  K  D  K :   C  D  F  Q  D  I  L  L  E  M  D  R  I  L  R  P  E  G  A  V  I  L  R  D  N  V  D  V  L  I  K  V  K  K  I  I  G  G  M  R  W  N  F  K  L  M  D  H  E  D  G  P  L  V  P  E  K  I  L  V  A  V  K  Q  Y  W  T  L  G  D  T  N  S  T  S  S  Q  *  D  A  T  E  D  V  V  *  P  Y  E  L  V  W  I  R  K  T  N  I  L  *  I  Q  N  P  W  L  C  K  T  F  H  P  *  E  F  *  S  S  R  V  P  *  Q  V  T  P  R  H  I  F  S  L  D  G  S  I  N  Y  T  R  *  F  S  V  Y  N  C  L  H  F  L  L  C  S  M  S  R  *  I  M  T  L  K  T  E  L  H  G  I  I  M  K  L  F  E  S  P  L  *  T  F  L  P  S  I  Y  R  L  C  N  V  L  F  N  *  S  G  N  L  I  *  L  I  S  D  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114114" stop="114142"/>
                    <exon start="115094" stop="115745"/>
                    <exon start="115862" stop="116072"/>
                    <exon start="116217" stop="116511"/>
                    <exon start="117656" stop="118030"/>
                    <exon start="118851" stop="118928"/>
                    <exon start="119467" stop="119701"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1872</number_coding_nucleotides>
                  <number_encoded_amino_acids>624</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIVGIFSCHWAAMAGKNSGDNRTRTSVSIFIIAGLCCFFYLLGAWQRSGFGKGDSIAVAVTKTAGENCDVLPNLNFETRHAGEAGGTDESEEVEELKPCDPQYTDYTPCQDQKRAMTFPRENMNYRERHCPPQEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWVQYEGNVFRFPGGGTQFPQGADKYIDQLASVVPIENGTVRTALDTGCGVASWGAYLWKRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYPSKAFDMAHCSRCLIPWGAADGILMMEVDRVLRPGGYWVLSGPPINWKVNFKAWQRPKEDLEEEQRKIEEAAKLLCWEKISEKGETAIWQKRKDSASCRSAQENSAAKVCKPSDPDSVWYNKMEMCITPNNGNGGDESLKPFPERLYAVPPRIANGLVSGVSVEKYQEDSKKWKKHVSAYKKINKLLDTGRYRNIMDMNAGLGGFAAALHDPKFWVMNVMPTIAEKNTLGVVFERGLIGIYHDWCEAFSTYPRTYDLIHANGLFSLYKDKCDFQDILLEMDRILRPEGAVILRDNVDVLIKVKKIIGGMRWNFKLMDHEDGPLVPEKILVAVKQYWTLGDTNSTSSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="113821" e_stop="114142"/>
            <exon e_start="115094" e_stop="115745"/>
            <exon e_start="115862" e_stop="116072"/>
            <exon e_start="116217" e_stop="116511"/>
            <exon e_start="117656" e_stop="118030"/>
            <exon e_start="118851" e_stop="118928"/>
            <exon e_start="119467" e_stop="120006"/>
            <exon e_start="120121" e_stop="120132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.669" acc_prob="0.993" e_score="0.950"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.966" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="0.998"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="113821" e_stop="114142" e_length="322"/>
          </exon>
          <intron i_serial="1" don_prob="0.669" acc_prob="0.993">
            <gDNA_intron_boundary i_start="114143" i_stop="115093" i_length="951"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115094" e_stop="115745" e_length="652"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="115746" i_stop="115861" i_length="116"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115862" e_stop="116072" e_length="211"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.994">
            <gDNA_intron_boundary i_start="116073" i_stop="116216" i_length="144"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116217" e_stop="116511" e_length="295"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.994">
            <gDNA_intron_boundary i_start="116512" i_stop="117655" i_length="1144"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="117656" e_stop="118030" e_length="375"/>
          </exon>
          <intron i_serial="5" don_prob="0.960" acc_prob="0.966">
            <gDNA_intron_boundary i_start="118031" i_stop="118850" i_length="820"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="118851" e_stop="118928" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.974">
            <gDNA_intron_boundary i_start="118929" i_stop="119466" i_length="538"/>
          </intron>
          <exon e_serial="7" e_score="0.998">
            <gDNA_exon_boundary e_start="119467" e_stop="120006" e_length="540"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="120007" i_stop="120120" i_length="114"/>
          </intron>
          <exon e_serial="8" e_score="0.667">
            <gDNA_exon_boundary e_start="120121" e_stop="120132" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113821" stop="114142"/>
              <exon start="115094" stop="115477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113824" stop="114142"/>
              <exon start="115094" stop="115138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113828" stop="114142"/>
              <exon start="115094" stop="115200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113828" stop="114142"/>
              <exon start="115094" stop="115198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113835" stop="114142"/>
              <exon start="115094" stop="115488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113849" stop="114142"/>
              <exon start="115094" stop="115308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114107" stop="114142"/>
              <exon start="115094" stop="115745"/>
              <exon start="115862" stop="116072"/>
              <exon start="116217" stop="116511"/>
              <exon start="117656" stop="118030"/>
              <exon start="118851" stop="118928"/>
              <exon start="119467" stop="120006"/>
              <exon start="120121" stop="120132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114116" stop="114142"/>
              <exon start="115094" stop="115745"/>
              <exon start="115862" stop="115910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115473" stop="115745"/>
              <exon start="115862" stop="116072"/>
              <exon start="116217" stop="116232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115622" stop="115745"/>
              <exon start="115862" stop="116072"/>
              <exon start="116217" stop="116511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115660" stop="115745"/>
              <exon start="115862" stop="116072"/>
              <exon start="116217" stop="116448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115725" stop="115745"/>
              <exon start="115862" stop="116072"/>
              <exon start="116217" stop="116511"/>
              <exon start="117656" stop="117945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115946" stop="116072"/>
              <exon start="116217" stop="116511"/>
              <exon start="117656" stop="117731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115970" stop="116072"/>
              <exon start="116217" stop="116511"/>
              <exon start="117656" stop="117733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118013" stop="118030"/>
              <exon start="118851" stop="118928"/>
              <exon start="119467" stop="119989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118013" stop="118030"/>
              <exon start="118851" stop="118928"/>
              <exon start="119467" stop="119883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295546" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACAACCAAACCCGAGTTTTCACTTTCTTCAAAGTACTACCATTTTTTCCCGTCTTTGTATGATAGATAGAGAGAAGGAGACGTGTGATTTTGATGTATTTGGTTAAAAAAATCGTCAAGAAACGATTTTTATGAATTAAAGTTTGGATTTTTGAAGTGGGGTTTGTGTTAAATTTGTTTCTTGATTAATTTTTTTTGGAATTTTTTAAGGACTGGACCCATAACCCATTGCTGTCTGTTGATAAAGGAAAAGAAATAAAGGGGAAAGAAGAGATTTTGGAGATCATTTAAGGAATTGTTGGAATATTTTCATGCCATTG : GGCTGCAATGGCGGGCAAAAACTCAGGGGATAATAGGACTAGGACTTCTGTATCAATATTTATAATAGCTGGTCTATGCTGCTTCTTCTATTTACTTGGAGCATGGCAAAGAAGTGGTTTTGGGAAAGGAGATAGTATAGCAGTGGCTGTCACCAAGACTGCTGGTGAGAATTGCGATGTACTACCAAATCTCAATTTTGAAACTCGTCATGCTGGCGAAGCAGGTGGTACTGATGAGTCGGAAGAAGTCGAGGAACTTAAGCCATGTGATCCTCAGTACACTGATTATACACCATGTCAAGATCAAAAGCGTGCTATGACTTTCCCAAGGGAAAATATGAACTACCGAGAAAGGCATTGTCCACCTCAAGAAGAGAAGTTACATTGCCTTATTCCAGCACCTAAGGGATATGTTACCCCATTTCCGTGGCCAAAAAGTCGGGATTATGTTCCCTATGCCAATGCTCCATATAAGAGCTTGACTGTTGAGAAAGCTATTCAGAATTGGGTTCAATATGAGGGTAATGTGTTTAGGTTCCCAGGAGGAGGGACACAATTCCCTCAAGGAGCAGATAAGTATATTGATCAGCTTGCTTCAGTCGTCCCAATCGAGAATGGGACAGTTCGGACTGCTTTGGACACTGGTTGTGGG : GTTGCAAGTTGGGGTGCTTATCTTTGGAAAAGGAATGTCATAGCAATGTCATTTGCCCCAAGAGACTCACATGAAGCTCAGGTTCAGTTTGCTCTGGAAAGGGGTGTGCCTGCTGTTATTGGTGTACTAGGAACAATCAAAATGCCATATCCATCTAAAGCCTTTGATATGGCCCATTGTTCTCGTTGTCTAATCCCATGGGGAGCTGCTG : ATGGAATCCTCATGATGGAAGTTGACCGAGTTCTTAGACCTGGAGGCTACTGGGTGCTTTCTGGACCTCCTATCAACTGGAAGGTCAATTTTAAGGCCTGGCAACGCCCCAAGGAGGATCTTGAGGAAGAACAAAGGAAGATTGAAGAGGCTGCTAAACTTCTTTGCTGGGAGAAGATATCTGAGAAGGGAGAGACTGCTATTTGGCAGAAAAGAAAGGATAGTGCCTCATGCCGTTCTGCACAAGAAAATTCTGCAGCCAAAGTTTGTAAACCTTCTGATCCAGATAGTGTCTG : GTACAACAAAATGGAAATGTGCATAACACCAAACAATGGTAATGGTGGAGACGAGAGTCTAAAGCCATTCCCTGAGAGACTTTATGCTGTTCCTCCAAGAATTGCCAATGGATTAGTTTCTGGAGTGTCTGTTGAGAAATATCAAGAAGACAGCAAGAAATGGAAGAAACACGTAAGTGCTTATAAGAAGATCAACAAACTCCTGGACACTGGAAGGTACCGCAACATTATGGACATGAATGCTGGACTAGGAGGTTTTGCAGCAGCACTTCACGATCCCAAGTTTTGGGTTATGAATGTTATGCCAACAATAGCTGAGAAGAATACTTTGGGAGTTGTATTCGAACGGGGACTGATTGGTATCTATCATGACTG : GTGTGAAGCATTTTCTACATACCCAAGGACATATGATCTCATTCATGCTAATGGCCTTTTCAGTTTATATAAGGACAA : GTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGAACTTCAAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTCAAACAATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCATATGAACTCGTATGGATCAGGAAGACCAACATCTTATGAATACAAAATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGAAGCTTTTTGAAAGTCCTTTATAAAC : AATGAGAAAAGA</gDNA_template>
            <first_frame> K  T  T  K  P  E  F  S  L  S  S  K  Y  Y  H  F  F  P  S  L  Y  D  R  *  R  E  G  D  V  *  F  *  C  I  W  L  K  K  S  S  R  N  D  F  Y  E  L  K  F  G  F  L  K  W  G  L  C  *  I  C  F  L  I  N  F  F  W  N  F  L  R  T  G  P  I  T  H  C  C  L  L  I  K  E  K  K  *  R  G  K  K  R  F  W  R  S  F  K  E  L  L  E  Y  F  H  A  I   : G  L  Q  W  R  A  K  T  Q  G  I  I  G  L  G  L  L  Y  Q  Y  L  *  *  L  V  Y  A  A  S  S  I  Y  L  E  H  G  K  E  V  V  L  G  K  E  I  V  *  Q  W  L  S  P  R  L  L  V  R  I  A  M  Y  Y  Q  I  S  I  L  K  L  V  M  L  A  K  Q  V  V  L  M  S  R  K  K  S  R  N  L  S  H  V  I  L  S  T  L  I  I  H  H  V  K  I  K  S  V  L  *  L  S  Q  G  K  I  *  T  T  E  K  G  I  V  H  L  K  K  R  S  Y  I  A  L  F  Q  H  L  R  D  M  L  P  H  F  R  G  Q  K  V  G  I  M  F  P  M  P  M  L  H  I  R  A  *  L  L  R  K  L  F  R  I  G  F  N  M  R  V  M  C  L  G  S  Q  E  E  G  H  N  S  L  K  E  Q  I  S  I  L  I  S  L  L  Q  S  S  Q  S  R  M  G  Q  F  G  L  L  W  T  L  V  V  G :   L  Q  V  G  V  L  I  F  G  K  G  M  S  *  Q  C  H  L  P  Q  E  T  H  M  K  L  R  F  S  L  L  W  K  G  V  C  L  L  L  L  V  Y  *  E  Q  S  K  C  H  I  H  L  K  P  L  I  W  P  I  V  L  V  V  *  S  H  G  E  L  L  :  M  E  S  S  *  W  K  L  T  E  F  L  D  L  E  A  T  G  C  F  L  D  L  L  S  T  G  R  S  I  L  R  P  G  N  A  P  R  R  I  L  R  K  N  K  G  R  L  K  R  L  L  N  F  F  A  G  R  R  Y  L  R  R  E  R  L  L  F  G  R  K  E  R  I  V  P  H  A  V  L  H  K  K  I  L  Q  P  K  F  V  N  L  L  I  Q  I  V  S   : G  T  T  K  W  K  C  A  *  H  Q  T  M  V  M  V  E  T  R  V  *  S  H  S  L  R  D  F  M  L  F  L  Q  E  L  P  M  D  *  F  L  E  C  L  L  R  N  I  K  K  T  A  R  N  G  R  N  T  *  V  L  I  R  R  S  T  N  S  W  T  L  E  G  T  A  T  L  W  T  *  M  L  D  *  E  V  L  Q  Q  H  F  T  I  P  S  F  G  L  *  M  L  C  Q  Q  *  L  R  R  I  L  W  E  L  Y  S  N  G  D  *  L  V  S  I  M  T   : G  V  K  H  F  L  H  T  Q  G  H  M  I  S  F  M  L  M  A  F  S  V  Y  I  R  T   : S  V  T  F  K  T  F  S  *  R  W  T  V  F  C  V  Q  K  E  L  S  F  *  E  T  M  *  M  Y  *  S  R  *  R  R  *  *  E  A  *  G  G  T  S  N  *  W  I  M  R  T  V  P  L  F  P  K  K  Y  W  L  L  S  N  N  I  G  L  W  V  I  P  T  P  H  P  H  N  E  M  P  P  K  M  L  S  D  H  M  N  S  Y  G  S  G  R  P  T  S  Y  E  Y  K  I  H  G  Y  A  R  R  F  T  P  R  N  F  D  R  A  G  S  L  D  R  *  L  H  G  T  S  L  V  L  M  D  P  *  I  I  P  D  D  L  A  F  I  T  V  F  I  F  F  S  V  P  C  L  V  R  *  *  L  *  K  L  S  Y  M  G  L  L  *  S  F  L  K  V  L  Y  K   : Q  *  E  K  </first_frame>
            <second_frame>  K  Q  P  N  P  S  F  H  F  L  Q  S  T  T  I  F  S  R  L  C  M  I  D  R  E  K  E  T  C  D  F  D  V  F  G  *  K  N  R  Q  E  T  I  F  M  N  *  S  L  D  F  *  S  G  V  C  V  K  F  V  S  *  L  I  F  F  G  I  F  *  G  L  D  P  *  P  I  A  V  C  *  *  R  K  R  N  K  G  E  R  R  D  F  G  D  H  L  R  N  C  W  N  I  F  M  P  L  :  G  C  N  G  G  Q  K  L  R  G  *  *  D  *  D  F  C  I  N  I  Y  N  S  W  S  M  L  L  L  L  F  T  W  S  M  A  K  K  W  F  W  E  R  R  *  Y  S  S  G  C  H  Q  D  C  W  *  E  L  R  C  T  T  K  S  Q  F  *  N  S  S  C  W  R  S  R  W  Y  *  *  V  G  R  S  R  G  T  *  A  M  *  S  S  V  H  *  L  Y  T  M  S  R  S  K  A  C  Y  D  F  P  K  G  K  Y  E  L  P  R  K  A  L  S  T  S  R  R  E  V  T  L  P  Y  S  S  T  *  G  I  C  Y  P  I  S  V  A  K  K  S  G  L  C  S  L  C  Q  C  S  I  *  E  L  D  C  *  E  S  Y  S  E  L  G  S  I  *  G  *  C  V  *  V  P  R  R  R  D  T  I  P  S  R  S  R  *  V  Y  *  S  A  C  F  S  R  P  N  R  E  W  D  S  S  D  C  F  G  H  W  L  W   : G  C  K  L  G  C  L  S  L  E  K  E  C  H  S  N  V  I  C  P  K  R  L  T  *  S  S  G  S  V  C  S  G  K  G  C  A  C  C  Y  W  C  T  R  N  N  Q  N  A  I  S  I  *  S  L  *  Y  G  P  L  F  S  L  S  N  P  M  G  S  C  * :   W  N  P  H  D  G  S  *  P  S  S  *  T  W  R  L  L  G  A  F  W  T  S  Y  Q  L  E  G  Q  F  *  G  L  A  T  P  Q  G  G  S  *  G  R  T  K  E  D  *  R  G  C  *  T  S  L  L  G  E  D  I  *  E  G  R  D  C  Y  L  A  E  K  K  G  *  C  L  M  P  F  C  T  R  K  F  C  S  Q  S  L  *  T  F  *  S  R  *  C  L  :  V  Q  Q  N  G  N  V  H  N  T  K  Q  W  *  W  W  R  R  E  S  K  A  I  P  *  E  T  L  C  C  S  S  K  N  C  Q  W  I  S  F  W  S  V  C  *  E  I  S  R  R  Q  Q  E  M  E  E  T  R  K  C  L  *  E  D  Q  Q  T  P  G  H  W  K  V  P  Q  H  Y  G  H  E  C  W  T  R  R  F  C  S  S  T  S  R  S  Q  V  L  G  Y  E  C  Y  A  N  N  S  *  E  E  Y  F  G  S  C  I  R  T  G  T  D  W  Y  L  S  *  L  :  V  *  S  I  F  Y  I  P  K  D  I  *  S  H  S  C  *  W  P  F  Q  F  I  *  G  Q  :  V  *  L  S  R  H  S  L  R  D  G  P  Y  F  A  S  R  R  S  C  H  S  K  R  Q  C  R  C  T  D  Q  G  E  E  D  N  R  R  H  E  V  E  L  Q  I  D  G  S  *  G  R  S  P  C  S  R  K  N  T  G  C  C  Q  T  I  L  D  S  G  *  Y  Q  L  H  I  L  T  M  R  C  H  R  R  C  C  L  T  I  *  T  R  M  D  Q  E  D  Q  H  L  M  N  T  K  S  M  V  M  Q  D  V  S  P  L  G  I  L  I  E  Q  G  P  L  T  G  D  S  T  A  H  L  *  S  *  W  I  H  K  L  Y  Q  M  I  *  R  L  *  L  S  S  F  S  S  L  F  H  V  S  L  D  N  D  S  K  N  *  A  T  W  D  Y  Y  E  A  F  *  K  S  F  I  N  :  N  E  K  R </second_frame>
            <third_frame>   N  N  Q  T  R  V  F  T  F  F  K  V  L  P  F  F  P  V  F  V  *  *  I  E  R  R  R  R  V  I  L  M  Y  L  V  K  K  I  V  K  K  R  F  L  *  I  K  V  W  I  F  E  V  G  F  V  L  N  L  F  L  D  *  F  F  L  E  F  F  K  D  W  T  H  N  P  L  L  S  V  D  K  G  K  E  I  K  G  K  E  E  I  L  E  I  I  *  G  I  V  G  I  F  S  C  H  W :   A  A  M  A  G  K  N  S  G  D  N  R  T  R  T  S  V  S  I  F  I  I  A  G  L  C  C  F  F  Y  L  L  G  A  W  Q  R  S  G  F  G  K  G  D  S  I  A  V  A  V  T  K  T  A  G  E  N  C  D  V  L  P  N  L  N  F  E  T  R  H  A  G  E  A  G  G  T  D  E  S  E  E  V  E  E  L  K  P  C  D  P  Q  Y  T  D  Y  T  P  C  Q  D  Q  K  R  A  M  T  F  P  R  E  N  M  N  Y  R  E  R  H  C  P  P  Q  E  E  K  L  H  C  L  I  P  A  P  K  G  Y  V  T  P  F  P  W  P  K  S  R  D  Y  V  P  Y  A  N  A  P  Y  K  S  L  T  V  E  K  A  I  Q  N  W  V  Q  Y  E  G  N  V  F  R  F  P  G  G  G  T  Q  F  P  Q  G  A  D  K  Y  I  D  Q  L  A  S  V  V  P  I  E  N  G  T  V  R  T  A  L  D  T  G  C  G  :  V  A  S  W  G  A  Y  L  W  K  R  N  V  I  A  M  S  F  A  P  R  D  S  H  E  A  Q  V  Q  F  A  L  E  R  G  V  P  A  V  I  G  V  L  G  T  I  K  M  P  Y  P  S  K  A  F  D  M  A  H  C  S  R  C  L  I  P  W  G  A  A   : D  G  I  L  M  M  E  V  D  R  V  L  R  P  G  G  Y  W  V  L  S  G  P  P  I  N  W  K  V  N  F  K  A  W  Q  R  P  K  E  D  L  E  E  E  Q  R  K  I  E  E  A  A  K  L  L  C  W  E  K  I  S  E  K  G  E  T  A  I  W  Q  K  R  K  D  S  A  S  C  R  S  A  Q  E  N  S  A  A  K  V  C  K  P  S  D  P  D  S  V  W :   Y  N  K  M  E  M  C  I  T  P  N  N  G  N  G  G  D  E  S  L  K  P  F  P  E  R  L  Y  A  V  P  P  R  I  A  N  G  L  V  S  G  V  S  V  E  K  Y  Q  E  D  S  K  K  W  K  K  H  V  S  A  Y  K  K  I  N  K  L  L  D  T  G  R  Y  R  N  I  M  D  M  N  A  G  L  G  G  F  A  A  A  L  H  D  P  K  F  W  V  M  N  V  M  P  T  I  A  E  K  N  T  L  G  V  V  F  E  R  G  L  I  G  I  Y  H  D  W :   C  E  A  F  S  T  Y  P  R  T  Y  D  L  I  H  A  N  G  L  F  S  L  Y  K  D  K :   C  D  F  Q  D  I  L  L  E  M  D  R  I  L  R  P  E  G  A  V  I  L  R  D  N  V  D  V  L  I  K  V  K  K  I  I  G  G  M  R  W  N  F  K  L  M  D  H  E  D  G  P  L  V  P  E  K  I  L  V  A  V  K  Q  Y  W  T  L  G  D  T  N  S  T  S  S  Q  *  D  A  T  E  D  V  V  *  P  Y  E  L  V  W  I  R  K  T  N  I  L  *  I  Q  N  P  W  L  C  K  T  F  H  P  *  E  F  *  S  S  R  V  P  *  Q  V  T  P  R  H  I  F  S  L  D  G  S  I  N  Y  T  R  *  F  S  V  Y  N  C  L  H  F  L  L  C  S  M  S  R  *  I  M  T  L  K  T  E  L  H  G  I  I  M  K  L  F  E  S  P  L  *  T :   M  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114114" stop="114142"/>
                    <exon start="115094" stop="115745"/>
                    <exon start="115862" stop="116072"/>
                    <exon start="116217" stop="116511"/>
                    <exon start="117656" stop="118030"/>
                    <exon start="118851" stop="118928"/>
                    <exon start="119467" stop="119701"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1872</number_coding_nucleotides>
                  <number_encoded_amino_acids>624</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIVGIFSCHWAAMAGKNSGDNRTRTSVSIFIIAGLCCFFYLLGAWQRSGFGKGDSIAVAVTKTAGENCDVLPNLNFETRHAGEAGGTDESEEVEELKPCDPQYTDYTPCQDQKRAMTFPRENMNYRERHCPPQEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWVQYEGNVFRFPGGGTQFPQGADKYIDQLASVVPIENGTVRTALDTGCGVASWGAYLWKRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYPSKAFDMAHCSRCLIPWGAADGILMMEVDRVLRPGGYWVLSGPPINWKVNFKAWQRPKEDLEEEQRKIEEAAKLLCWEKISEKGETAIWQKRKDSASCRSAQENSAAKVCKPSDPDSVWYNKMEMCITPNNGNGGDESLKPFPERLYAVPPRIANGLVSGVSVEKYQEDSKKWKKHVSAYKKINKLLDTGRYRNIMDMNAGLGGFAAALHDPKFWVMNVMPTIAEKNTLGVVFERGLIGIYHDWCEAFSTYPRTYDLIHANGLFSLYKDKCDFQDILLEMDRILRPEGAVILRDNVDVLIKVKKIIGGMRWNFKLMDHEDGPLVPEKILVAVKQYWTLGDTNSTSSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="114152" e_stop="114244"/>
            <exon e_start="115094" e_stop="115745"/>
            <exon e_start="115862" e_stop="116072"/>
            <exon e_start="116217" e_stop="116511"/>
            <exon e_start="117656" e_stop="118030"/>
            <exon e_start="118851" e_stop="118928"/>
            <exon e_start="119467" e_stop="120085"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.966" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114152" e_stop="114244" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="114245" i_stop="115093" i_length="849"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115094" e_stop="115745" e_length="652"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="115746" i_stop="115861" i_length="116"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115862" e_stop="116072" e_length="211"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.994">
            <gDNA_intron_boundary i_start="116073" i_stop="116216" i_length="144"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116217" e_stop="116511" e_length="295"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.994">
            <gDNA_intron_boundary i_start="116512" i_stop="117655" i_length="1144"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="117656" e_stop="118030" e_length="375"/>
          </exon>
          <intron i_serial="5" don_prob="0.960" acc_prob="0.966">
            <gDNA_intron_boundary i_start="118031" i_stop="118850" i_length="820"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="118851" e_stop="118928" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.974">
            <gDNA_intron_boundary i_start="118929" i_stop="119466" i_length="538"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="119467" e_stop="120085" e_length="619"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114152" stop="114244"/>
              <exon start="115094" stop="115745"/>
              <exon start="115862" stop="115918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114153" stop="114244"/>
              <exon start="115094" stop="115625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115473" stop="115745"/>
              <exon start="115862" stop="116072"/>
              <exon start="116217" stop="116232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115622" stop="115745"/>
              <exon start="115862" stop="116072"/>
              <exon start="116217" stop="116511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115660" stop="115745"/>
              <exon start="115862" stop="116072"/>
              <exon start="116217" stop="116448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115725" stop="115745"/>
              <exon start="115862" stop="116072"/>
              <exon start="116217" stop="116511"/>
              <exon start="117656" stop="117945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115946" stop="116072"/>
              <exon start="116217" stop="116511"/>
              <exon start="117656" stop="117731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115970" stop="116072"/>
              <exon start="116217" stop="116511"/>
              <exon start="117656" stop="117733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117944" stop="118030"/>
              <exon start="118851" stop="118928"/>
              <exon start="119467" stop="120080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577673" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118013" stop="118030"/>
              <exon start="118851" stop="118928"/>
              <exon start="119467" stop="119989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118013" stop="118030"/>
              <exon start="118851" stop="118928"/>
              <exon start="119467" stop="119883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119715" stop="120073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119717" stop="120085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119797" stop="120085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229418" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTGAATCATGTGTTAGCTGTGATCTGTTTATTTAATCATTGGAACTTTGTGATTTGGATTTGATTTCTTGTTTAGTTGATTCATTTGACAG : GGCTGCAATGGCGGGCAAAAACTCAGGGGATAATAGGACTAGGACTTCTGTATCAATATTTATAATAGCTGGTCTATGCTGCTTCTTCTATTTACTTGGAGCATGGCAAAGAAGTGGTTTTGGGAAAGGAGATAGTATAGCAGTGGCTGTCACCAAGACTGCTGGTGAGAATTGCGATGTACTACCAAATCTCAATTTTGAAACTCGTCATGCTGGCGAAGCAGGTGGTACTGATGAGTCGGAAGAAGTCGAGGAACTTAAGCCATGTGATCCTCAGTACACTGATTATACACCATGTCAAGATCAAAAGCGTGCTATGACTTTCCCAAGGGAAAATATGAACTACCGAGAAAGGCATTGTCCACCTCAAGAAGAGAAGTTACATTGCCTTATTCCAGCACCTAAGGGATATGTTACCCCATTTCCGTGGCCAAAAAGTCGGGATTATGTTCCCTATGCCAATGCTCCATATAAGAGCTTGACTGTTGAGAAAGCTATTCAGAATTGGGTTCAATATGAGGGTAATGTGTTTAGGTTCCCAGGAGGAGGGACACAATTCCCTCAAGGAGCAGATAAGTATATTGATCAGCTTGCTTCAGTCGTCCCAATCGAGAATGGGACAGTTCGGACTGCTTTGGACACTGGTTGTGGG : GTTGCAAGTTGGGGTGCTTATCTTTGGAAAAGGAATGTCATAGCAATGTCATTTGCCCCAAGAGACTCACATGAAGCTCAGGTTCAGTTTGCTCTGGAAAGGGGTGTGCCTGCTGTTATTGGTGTACTAGGAACAATCAAAATGCCATATCCATCTAAAGCCTTTGATATGGCCCATTGTTCTCGTTGTCTAATCCCATGGGGAGCTGCTG : ATGGAATCCTCATGATGGAAGTTGACCGAGTTCTTAGACCTGGAGGCTACTGGGTGCTTTCTGGACCTCCTATCAACTGGAAGGTCAATTTTAAGGCCTGGCAACGCCCCAAGGAGGATCTTGAGGAAGAACAAAGGAAGATTGAAGAGGCTGCTAAACTTCTTTGCTGGGAGAAGATATCTGAGAAGGGAGAGACTGCTATTTGGCAGAAAAGAAAGGATAGTGCCTCATGCCGTTCTGCACAAGAAAATTCTGCAGCCAAAGTTTGTAAACCTTCTGATCCAGATAGTGTCTG : GTACAACAAAATGGAAATGTGCATAACACCAAACAATGGTAATGGTGGAGACGAGAGTCTAAAGCCATTCCCTGAGAGACTTTATGCTGTTCCTCCAAGAATTGCCAATGGATTAGTTTCTGGAGTGTCTGTTGAGAAATATCAAGAAGACAGCAAGAAATGGAAGAAACACGTAAGTGCTTATAAGAAGATCAACAAACTCCTGGACACTGGAAGGTACCGCAACATTATGGACATGAATGCTGGACTAGGAGGTTTTGCAGCAGCACTTCACGATCCCAAGTTTTGGGTTATGAATGTTATGCCAACAATAGCTGAGAAGAATACTTTGGGAGTTGTATTCGAACGGGGACTGATTGGTATCTATCATGACTG : GTGTGAAGCATTTTCTACATACCCAAGGACATATGATCTCATTCATGCTAATGGCCTTTTCAGTTTATATAAGGACAA : GTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGAACTTCAAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTCAAACAATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCATATGAACTCGTATGGATCAGGAAGACCAACATCTTATGAATACAAAATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGAAGCTTTTTGAAAGTCCTTTATAAACATTTCTTCCCTCGATATATAGACTCTGTAATGTGTTGTTTAATTAAAGTGGAAATTTGATCTAGTTGATTTCTGATATG</gDNA_template>
            <first_frame> S  *  I  M  C  *  L  *  S  V  Y  L  I  I  G  T  L  *  F  G  F  D  F  L  F  S  *  F  I  *  Q  :  G  C  N  G  G  Q  K  L  R  G  *  *  D  *  D  F  C  I  N  I  Y  N  S  W  S  M  L  L  L  L  F  T  W  S  M  A  K  K  W  F  W  E  R  R  *  Y  S  S  G  C  H  Q  D  C  W  *  E  L  R  C  T  T  K  S  Q  F  *  N  S  S  C  W  R  S  R  W  Y  *  *  V  G  R  S  R  G  T  *  A  M  *  S  S  V  H  *  L  Y  T  M  S  R  S  K  A  C  Y  D  F  P  K  G  K  Y  E  L  P  R  K  A  L  S  T  S  R  R  E  V  T  L  P  Y  S  S  T  *  G  I  C  Y  P  I  S  V  A  K  K  S  G  L  C  S  L  C  Q  C  S  I  *  E  L  D  C  *  E  S  Y  S  E  L  G  S  I  *  G  *  C  V  *  V  P  R  R  R  D  T  I  P  S  R  S  R  *  V  Y  *  S  A  C  F  S  R  P  N  R  E  W  D  S  S  D  C  F  G  H  W  L  W   : G  C  K  L  G  C  L  S  L  E  K  E  C  H  S  N  V  I  C  P  K  R  L  T  *  S  S  G  S  V  C  S  G  K  G  C  A  C  C  Y  W  C  T  R  N  N  Q  N  A  I  S  I  *  S  L  *  Y  G  P  L  F  S  L  S  N  P  M  G  S  C  * :   W  N  P  H  D  G  S  *  P  S  S  *  T  W  R  L  L  G  A  F  W  T  S  Y  Q  L  E  G  Q  F  *  G  L  A  T  P  Q  G  G  S  *  G  R  T  K  E  D  *  R  G  C  *  T  S  L  L  G  E  D  I  *  E  G  R  D  C  Y  L  A  E  K  K  G  *  C  L  M  P  F  C  T  R  K  F  C  S  Q  S  L  *  T  F  *  S  R  *  C  L  :  V  Q  Q  N  G  N  V  H  N  T  K  Q  W  *  W  W  R  R  E  S  K  A  I  P  *  E  T  L  C  C  S  S  K  N  C  Q  W  I  S  F  W  S  V  C  *  E  I  S  R  R  Q  Q  E  M  E  E  T  R  K  C  L  *  E  D  Q  Q  T  P  G  H  W  K  V  P  Q  H  Y  G  H  E  C  W  T  R  R  F  C  S  S  T  S  R  S  Q  V  L  G  Y  E  C  Y  A  N  N  S  *  E  E  Y  F  G  S  C  I  R  T  G  T  D  W  Y  L  S  *  L  :  V  *  S  I  F  Y  I  P  K  D  I  *  S  H  S  C  *  W  P  F  Q  F  I  *  G  Q  :  V  *  L  S  R  H  S  L  R  D  G  P  Y  F  A  S  R  R  S  C  H  S  K  R  Q  C  R  C  T  D  Q  G  E  E  D  N  R  R  H  E  V  E  L  Q  I  D  G  S  *  G  R  S  P  C  S  R  K  N  T  G  C  C  Q  T  I  L  D  S  G  *  Y  Q  L  H  I  L  T  M  R  C  H  R  R  C  C  L  T  I  *  T  R  M  D  Q  E  D  Q  H  L  M  N  T  K  S  M  V  M  Q  D  V  S  P  L  G  I  L  I  E  Q  G  P  L  T  G  D  S  T  A  H  L  *  S  *  W  I  H  K  L  Y  Q  M  I  *  R  L  *  L  S  S  F  S  S  L  F  H  V  S  L  D  N  D  S  K  N  *  A  T  W  D  Y  Y  E  A  F  *  K  S  F  I  N  I  S  S  L  D  I  *  T  L  *  C  V  V  *  L  K  W  K  F  D  L  V  D  F  *  Y  </first_frame>
            <second_frame>  L  E  S  C  V  S  C  D  L  F  I  *  S  L  E  L  C  D  L  D  L  I  S  C  L  V  D  S  F  D  R :   A  A  M  A  G  K  N  S  G  D  N  R  T  R  T  S  V  S  I  F  I  I  A  G  L  C  C  F  F  Y  L  L  G  A  W  Q  R  S  G  F  G  K  G  D  S  I  A  V  A  V  T  K  T  A  G  E  N  C  D  V  L  P  N  L  N  F  E  T  R  H  A  G  E  A  G  G  T  D  E  S  E  E  V  E  E  L  K  P  C  D  P  Q  Y  T  D  Y  T  P  C  Q  D  Q  K  R  A  M  T  F  P  R  E  N  M  N  Y  R  E  R  H  C  P  P  Q  E  E  K  L  H  C  L  I  P  A  P  K  G  Y  V  T  P  F  P  W  P  K  S  R  D  Y  V  P  Y  A  N  A  P  Y  K  S  L  T  V  E  K  A  I  Q  N  W  V  Q  Y  E  G  N  V  F  R  F  P  G  G  G  T  Q  F  P  Q  G  A  D  K  Y  I  D  Q  L  A  S  V  V  P  I  E  N  G  T  V  R  T  A  L  D  T  G  C  G  :  V  A  S  W  G  A  Y  L  W  K  R  N  V  I  A  M  S  F  A  P  R  D  S  H  E  A  Q  V  Q  F  A  L  E  R  G  V  P  A  V  I  G  V  L  G  T  I  K  M  P  Y  P  S  K  A  F  D  M  A  H  C  S  R  C  L  I  P  W  G  A  A   : D  G  I  L  M  M  E  V  D  R  V  L  R  P  G  G  Y  W  V  L  S  G  P  P  I  N  W  K  V  N  F  K  A  W  Q  R  P  K  E  D  L  E  E  E  Q  R  K  I  E  E  A  A  K  L  L  C  W  E  K  I  S  E  K  G  E  T  A  I  W  Q  K  R  K  D  S  A  S  C  R  S  A  Q  E  N  S  A  A  K  V  C  K  P  S  D  P  D  S  V  W :   Y  N  K  M  E  M  C  I  T  P  N  N  G  N  G  G  D  E  S  L  K  P  F  P  E  R  L  Y  A  V  P  P  R  I  A  N  G  L  V  S  G  V  S  V  E  K  Y  Q  E  D  S  K  K  W  K  K  H  V  S  A  Y  K  K  I  N  K  L  L  D  T  G  R  Y  R  N  I  M  D  M  N  A  G  L  G  G  F  A  A  A  L  H  D  P  K  F  W  V  M  N  V  M  P  T  I  A  E  K  N  T  L  G  V  V  F  E  R  G  L  I  G  I  Y  H  D  W :   C  E  A  F  S  T  Y  P  R  T  Y  D  L  I  H  A  N  G  L  F  S  L  Y  K  D  K :   C  D  F  Q  D  I  L  L  E  M  D  R  I  L  R  P  E  G  A  V  I  L  R  D  N  V  D  V  L  I  K  V  K  K  I  I  G  G  M  R  W  N  F  K  L  M  D  H  E  D  G  P  L  V  P  E  K  I  L  V  A  V  K  Q  Y  W  T  L  G  D  T  N  S  T  S  S  Q  *  D  A  T  E  D  V  V  *  P  Y  E  L  V  W  I  R  K  T  N  I  L  *  I  Q  N  P  W  L  C  K  T  F  H  P  *  E  F  *  S  S  R  V  P  *  Q  V  T  P  R  H  I  F  S  L  D  G  S  I  N  Y  T  R  *  F  S  V  Y  N  C  L  H  F  L  L  C  S  M  S  R  *  I  M  T  L  K  T  E  L  H  G  I  I  M  K  L  F  E  S  P  L  *  T  F  L  P  S  I  Y  R  L  C  N  V  L  F  N  *  S  G  N  L  I  *  L  I  S  D  M </second_frame>
            <third_frame>   L  N  H  V  L  A  V  I  C  L  F  N  H  W  N  F  V  I  W  I  *  F  L  V  *  L  I  H  L  T   : G  L  Q  W  R  A  K  T  Q  G  I  I  G  L  G  L  L  Y  Q  Y  L  *  *  L  V  Y  A  A  S  S  I  Y  L  E  H  G  K  E  V  V  L  G  K  E  I  V  *  Q  W  L  S  P  R  L  L  V  R  I  A  M  Y  Y  Q  I  S  I  L  K  L  V  M  L  A  K  Q  V  V  L  M  S  R  K  K  S  R  N  L  S  H  V  I  L  S  T  L  I  I  H  H  V  K  I  K  S  V  L  *  L  S  Q  G  K  I  *  T  T  E  K  G  I  V  H  L  K  K  R  S  Y  I  A  L  F  Q  H  L  R  D  M  L  P  H  F  R  G  Q  K  V  G  I  M  F  P  M  P  M  L  H  I  R  A  *  L  L  R  K  L  F  R  I  G  F  N  M  R  V  M  C  L  G  S  Q  E  E  G  H  N  S  L  K  E  Q  I  S  I  L  I  S  L  L  Q  S  S  Q  S  R  M  G  Q  F  G  L  L  W  T  L  V  V  G :   L  Q  V  G  V  L  I  F  G  K  G  M  S  *  Q  C  H  L  P  Q  E  T  H  M  K  L  R  F  S  L  L  W  K  G  V  C  L  L  L  L  V  Y  *  E  Q  S  K  C  H  I  H  L  K  P  L  I  W  P  I  V  L  V  V  *  S  H  G  E  L  L  :  M  E  S  S  *  W  K  L  T  E  F  L  D  L  E  A  T  G  C  F  L  D  L  L  S  T  G  R  S  I  L  R  P  G  N  A  P  R  R  I  L  R  K  N  K  G  R  L  K  R  L  L  N  F  F  A  G  R  R  Y  L  R  R  E  R  L  L  F  G  R  K  E  R  I  V  P  H  A  V  L  H  K  K  I  L  Q  P  K  F  V  N  L  L  I  Q  I  V  S   : G  T  T  K  W  K  C  A  *  H  Q  T  M  V  M  V  E  T  R  V  *  S  H  S  L  R  D  F  M  L  F  L  Q  E  L  P  M  D  *  F  L  E  C  L  L  R  N  I  K  K  T  A  R  N  G  R  N  T  *  V  L  I  R  R  S  T  N  S  W  T  L  E  G  T  A  T  L  W  T  *  M  L  D  *  E  V  L  Q  Q  H  F  T  I  P  S  F  G  L  *  M  L  C  Q  Q  *  L  R  R  I  L  W  E  L  Y  S  N  G  D  *  L  V  S  I  M  T   : G  V  K  H  F  L  H  T  Q  G  H  M  I  S  F  M  L  M  A  F  S  V  Y  I  R  T   : S  V  T  F  K  T  F  S  *  R  W  T  V  F  C  V  Q  K  E  L  S  F  *  E  T  M  *  M  Y  *  S  R  *  R  R  *  *  E  A  *  G  G  T  S  N  *  W  I  M  R  T  V  P  L  F  P  K  K  Y  W  L  L  S  N  N  I  G  L  W  V  I  P  T  P  H  P  H  N  E  M  P  P  K  M  L  S  D  H  M  N  S  Y  G  S  G  R  P  T  S  Y  E  Y  K  I  H  G  Y  A  R  R  F  T  P  R  N  F  D  R  A  G  S  L  D  R  *  L  H  G  T  S  L  V  L  M  D  P  *  I  I  P  D  D  L  A  F  I  T  V  F  I  F  F  S  V  P  C  L  V  R  *  *  L  *  K  L  S  Y  M  G  L  L  *  S  F  L  K  V  L  Y  K  H  F  F  P  R  Y  I  D  S  V  M  C  C  L  I  K  V  E  I  *  S  S  *  F  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114189" stop="114244"/>
                    <exon start="115094" stop="115745"/>
                    <exon start="115862" stop="116072"/>
                    <exon start="116217" stop="116511"/>
                    <exon start="117656" stop="118030"/>
                    <exon start="118851" stop="118928"/>
                    <exon start="119467" stop="119701"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1899</number_coding_nucleotides>
                  <number_encoded_amino_acids>633</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLELCDLDLISCLVDSFDRAAMAGKNSGDNRTRTSVSIFIIAGLCCFFYLLGAWQRSGFGKGDSIAVAVTKTAGENCDVLPNLNFETRHAGEAGGTDESEEVEELKPCDPQYTDYTPCQDQKRAMTFPRENMNYRERHCPPQEEKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWVQYEGNVFRFPGGGTQFPQGADKYIDQLASVVPIENGTVRTALDTGCGVASWGAYLWKRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKMPYPSKAFDMAHCSRCLIPWGAADGILMMEVDRVLRPGGYWVLSGPPINWKVNFKAWQRPKEDLEEEQRKIEEAAKLLCWEKISEKGETAIWQKRKDSASCRSAQENSAAKVCKPSDPDSVWYNKMEMCITPNNGNGGDESLKPFPERLYAVPPRIANGLVSGVSVEKYQEDSKKWKKHVSAYKKINKLLDTGRYRNIMDMNAGLGGFAAALHDPKFWVMNVMPTIAEKNTLGVVFERGLIGIYHDWCEAFSTYPRTYDLIHANGLFSLYKDKCDFQDILLEMDRILRPEGAVILRDNVDVLIKVKKIIGGMRWNFKLMDHEDGPLVPEKILVAVKQYWTLGDTNSTSSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="119012" e_stop="120085"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119012" e_stop="120085" e_length="1074"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119012" stop="119744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119012" stop="119729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119013" stop="119730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119013" stop="119569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119375" stop="120037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119378" stop="120036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119715" stop="120073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119717" stop="120085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119797" stop="120085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229418" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTATTGCAGCTCCTTTATTGAAGGTCCTATTGTTGGCCGTGCCTAGTTGCTAATTAAGTAAAAAGGTCTAAATAATTGTGATATGATAAGAGCAAAGGTAGCTTAAGTAAATATACACTGATAGTAGATGATCATACACTTAAAATTTTAGGATAGTAACCTTCTCAGTATATGGTATAATGACTGATATTTGAAGTACCGACAGAAGTTTGCGTGTGTTGTGGCTAAATCCACCATCATTTCTCCTTTTTGCTGCTGTGACTTAATATGCTGTTATTCGTAACTGCACTGTTCTTGTTGAAATAGAAATGCCAGCTCGTCACTCTGGCAACTCATATCTCCCCCGTCTACTGATCCCCAGCCAGGAAAAGAAAAAAATACCCAGTTAAAGGGTGCTACAGGAAGAAAAATAATTGGTATCATTGACTAAATTAGCATTTTCTAATTTTATAGGTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGAACTTCAAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTCAAACAATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCATATGAACTCGTATGGATCAGGAAGACCAACATCTTATGAATACAAAATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGAAGCTTTTTGAAAGTCCTTTATAAACATTTCTTCCCTCGATATATAGACTCTGTAATGTGTTGTTTAATTAAAGTGGAAATTTGATCTAGTTGATTTCTGATATG</gDNA_template>
            <first_frame> W  Y  C  S  S  F  I  E  G  P  I  V  G  R  A  *  L  L  I  K  *  K  G  L  N  N  C  D  M  I  R  A  K  V  A  *  V  N  I  H  *  *  *  M  I  I  H  L  K  F  *  D  S  N  L  L  S  I  W  Y  N  D  *  Y  L  K  Y  R  Q  K  F  A  C  V  V  A  K  S  T  I  I  S  P  F  C  C  C  D  L  I  C  C  Y  S  *  L  H  C  S  C  *  N  R  N  A  S  S  S  L  W  Q  L  I  S  P  P  S  T  D  P  Q  P  G  K  E  K  N  T  Q  L  K  G  A  T  G  R  K  I  I  G  I  I  D  *  I  S  I  F  *  F  Y  R  C  D  F  Q  D  I  L  L  E  M  D  R  I  L  R  P  E  G  A  V  I  L  R  D  N  V  D  V  L  I  K  V  K  K  I  I  G  G  M  R  W  N  F  K  L  M  D  H  E  D  G  P  L  V  P  E  K  I  L  V  A  V  K  Q  Y  W  T  L  G  D  T  N  S  T  S  S  Q  *  D  A  T  E  D  V  V  *  P  Y  E  L  V  W  I  R  K  T  N  I  L  *  I  Q  N  P  W  L  C  K  T  F  H  P  *  E  F  *  S  S  R  V  P  *  Q  V  T  P  R  H  I  F  S  L  D  G  S  I  N  Y  T  R  *  F  S  V  Y  N  C  L  H  F  L  L  C  S  M  S  R  *  I  M  T  L  K  T  E  L  H  G  I  I  M  K  L  F  E  S  P  L  *  T  F  L  P  S  I  Y  R  L  C  N  V  L  F  N  *  S  G  N  L  I  *  L  I  S  D  M </first_frame>
            <second_frame>  G  I  A  A  P  L  L  K  V  L  L  L  A  V  P  S  C  *  L  S  K  K  V  *  I  I  V  I  *  *  E  Q  R  *  L  K  *  I  Y  T  D  S  R  *  S  Y  T  *  N  F  R  I  V  T  F  S  V  Y  G  I  M  T  D  I  *  S  T  D  R  S  L  R  V  L  W  L  N  P  P  S  F  L  L  F  A  A  V  T  *  Y  A  V  I  R  N  C  T  V  L  V  E  I  E  M  P  A  R  H  S  G  N  S  Y  L  P  R  L  L  I  P  S  Q  E  K  K  K  I  P  S  *  R  V  L  Q  E  E  K  *  L  V  S  L  T  K  L  A  F  S  N  F  I  G  V  T  F  K  T  F  S  *  R  W  T  V  F  C  V  Q  K  E  L  S  F  *  E  T  M  *  M  Y  *  S  R  *  R  R  *  *  E  A  *  G  G  T  S  N  *  W  I  M  R  T  V  P  L  F  P  K  K  Y  W  L  L  S  N  N  I  G  L  W  V  I  P  T  P  H  P  H  N  E  M  P  P  K  M  L  S  D  H  M  N  S  Y  G  S  G  R  P  T  S  Y  E  Y  K  I  H  G  Y  A  R  R  F  T  P  R  N  F  D  R  A  G  S  L  D  R  *  L  H  G  T  S  L  V  L  M  D  P  *  I  I  P  D  D  L  A  F  I  T  V  F  I  F  F  S  V  P  C  L  V  R  *  *  L  *  K  L  S  Y  M  G  L  L  *  S  F  L  K  V  L  Y  K  H  F  F  P  R  Y  I  D  S  V  M  C  C  L  I  K  V  E  I  *  S  S  *  F  L  I   </second_frame>
            <third_frame>   V  L  Q  L  L  Y  *  R  S  Y  C  W  P  C  L  V  A  N  *  V  K  R  S  K  *  L  *  Y  D  K  S  K  G  S  L  S  K  Y  T  L  I  V  D  D  H  T  L  K  I  L  G  *  *  P  S  Q  Y  M  V  *  *  L  I  F  E  V  P  T  E  V  C  V  C  C  G  *  I  H  H  H  F  S  F  L  L  L  *  L  N  M  L  L  F  V  T  A  L  F  L  L  K  *  K  C  Q  L  V  T  L  A  T  H  I  S  P  V  Y  *  S  P  A  R  K  R  K  K  Y  P  V  K  G  C  Y  R  K  K  N  N  W  Y  H  *  L  N  *  H  F  L  I  L  *  V  *  L  S  R  H  S  L  R  D  G  P  Y  F  A  S  R  R  S  C  H  S  K  R  Q  C  R  C  T  D  Q  G  E  E  D  N  R  R  H  E  V  E  L  Q  I  D  G  S  *  G  R  S  P  C  S  R  K  N  T  G  C  C  Q  T  I  L  D  S  G  *  Y  Q  L  H  I  L  T  M  R  C  H  R  R  C  C  L  T  I  *  T  R  M  D  Q  E  D  Q  H  L  M  N  T  K  S  M  V  M  Q  D  V  S  P  L  G  I  L  I  E  Q  G  P  L  T  G  D  S  T  A  H  L  *  S  *  W  I  H  K  L  Y  Q  M  I  *  R  L  *  L  S  S  F  S  S  L  F  H  V  S  L  D  N  D  S  K  N  *  A  T  W  D  Y  Y  E  A  F  *  K  S  F  I  N  I  S  S  L  D  I  *  T  L  *  C  V  V  *  L  K  W  K  F  D  L  V  D  F  *  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119459" stop="119701"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYRCDFQDILLEMDRILRPEGAVILRDNVDVLIKVKKIIGGMRWNFKLMDHEDGPLVPEKILVAVKQYWTLGDTNSTSSQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119604" stop="119840"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WIMRTVPLFPKKYWLLSNNIGLWVIPTPHPHNEMPPKMLSDHMNSYGSGRPTSYEYKIHGYARRFTPRNFDRAGSLDR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="119012" e_stop="120069"/>
            <exon e_start="120121" e_stop="120141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119012" e_stop="120069" e_length="1058"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="120070" i_stop="120120" i_length="51"/>
          </intron>
          <exon e_serial="2" e_score="0.700">
            <gDNA_exon_boundary e_start="120121" e_stop="120141" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119012" stop="119744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119012" stop="119729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119013" stop="119730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119013" stop="119569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119375" stop="120037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119378" stop="120036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119741" stop="120069"/>
              <exon start="120121" stop="120140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119775" stop="120069"/>
              <exon start="120121" stop="120141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221259" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTATTGCAGCTCCTTTATTGAAGGTCCTATTGTTGGCCGTGCCTAGTTGCTAATTAAGTAAAAAGGTCTAAATAATTGTGATATGATAAGAGCAAAGGTAGCTTAAGTAAATATACACTGATAGTAGATGATCATACACTTAAAATTTTAGGATAGTAACCTTCTCAGTATATGGTATAATGACTGATATTTGAAGTACCGACAGAAGTTTGCGTGTGTTGTGGCTAAATCCACCATCATTTCTCCTTTTTGCTGCTGTGACTTAATATGCTGTTATTCGTAACTGCACTGTTCTTGTTGAAATAGAAATGCCAGCTCGTCACTCTGGCAACTCATATCTCCCCCGTCTACTGATCCCCAGCCAGGAAAAGAAAAAAATACCCAGTTAAAGGGTGCTACAGGAAGAAAAATAATTGGTATCATTGACTAAATTAGCATTTTCTAATTTTATAGGTGTGACTTTCAAGACATTCTCTTAGAGATGGACCGTATTTTGCGTCCAGAAGGAGCTGTCATTCTAAGAGACAATGTAGATGTACTGATCAAGGTGAAGAAGATAATAGGAGGCATGAGGTGGAACTTCAAATTGATGGATCATGAGGACGGTCCCCTTGTTCCCGAAAAAATACTGGTTGCTGTCAAACAATATTGGACTCTGGGTGATACCAACTCCACATCCTCACAATGAGATGCCACCGAAGATGTTGTCTGACCATATGAACTCGTATGGATCAGGAAGACCAACATCTTATGAATACAAAATCCATGGTTATGCAAGACGTTTCACCCCTAGGAATTTTGATCGAGCAGGGTCCCTTGACAGGTGACTCCACGGCACATCTTTAGTCTTGATGGATCCATAAATTATACCAGATGATTTAGCGTTTATAACTGTCTTCATTTTCTTCTCTGTTCCATGTCTCGTTAGATAATGACTCTAAAAACTGAGCTACATGGGATTATTATGAAGCTTTTTGAAAGTCCTTTATAAACATTTCTTCCCTCGATATATAGACTCTGTAATGTGTTGTTTAATTAAAGTGGAAATTTGATCTA : AATGAGAAAAGAGCAAAAAAT</gDNA_template>
            <first_frame> W  Y  C  S  S  F  I  E  G  P  I  V  G  R  A  *  L  L  I  K  *  K  G  L  N  N  C  D  M  I  R  A  K  V  A  *  V  N  I  H  *  *  *  M  I  I  H  L  K  F  *  D  S  N  L  L  S  I  W  Y  N  D  *  Y  L  K  Y  R  Q  K  F  A  C  V  V  A  K  S  T  I  I  S  P  F  C  C  C  D  L  I  C  C  Y  S  *  L  H  C  S  C  *  N  R  N  A  S  S  S  L  W  Q  L  I  S  P  P  S  T  D  P  Q  P  G  K  E  K  N  T  Q  L  K  G  A  T  G  R  K  I  I  G  I  I  D  *  I  S  I  F  *  F  Y  R  C  D  F  Q  D  I  L  L  E  M  D  R  I  L  R  P  E  G  A  V  I  L  R  D  N  V  D  V  L  I  K  V  K  K  I  I  G  G  M  R  W  N  F  K  L  M  D  H  E  D  G  P  L  V  P  E  K  I  L  V  A  V  K  Q  Y  W  T  L  G  D  T  N  S  T  S  S  Q  *  D  A  T  E  D  V  V  *  P  Y  E  L  V  W  I  R  K  T  N  I  L  *  I  Q  N  P  W  L  C  K  T  F  H  P  *  E  F  *  S  S  R  V  P  *  Q  V  T  P  R  H  I  F  S  L  D  G  S  I  N  Y  T  R  *  F  S  V  Y  N  C  L  H  F  L  L  C  S  M  S  R  *  I  M  T  L  K  T  E  L  H  G  I  I  M  K  L  F  E  S  P  L  *  T  F  L  P  S  I  Y  R  L  C  N  V  L  F  N  *  S  G  N  L  I  * :   M  R  K  E  Q  K   </first_frame>
            <second_frame>  G  I  A  A  P  L  L  K  V  L  L  L  A  V  P  S  C  *  L  S  K  K  V  *  I  I  V  I  *  *  E  Q  R  *  L  K  *  I  Y  T  D  S  R  *  S  Y  T  *  N  F  R  I  V  T  F  S  V  Y  G  I  M  T  D  I  *  S  T  D  R  S  L  R  V  L  W  L  N  P  P  S  F  L  L  F  A  A  V  T  *  Y  A  V  I  R  N  C  T  V  L  V  E  I  E  M  P  A  R  H  S  G  N  S  Y  L  P  R  L  L  I  P  S  Q  E  K  K  K  I  P  S  *  R  V  L  Q  E  E  K  *  L  V  S  L  T  K  L  A  F  S  N  F  I  G  V  T  F  K  T  F  S  *  R  W  T  V  F  C  V  Q  K  E  L  S  F  *  E  T  M  *  M  Y  *  S  R  *  R  R  *  *  E  A  *  G  G  T  S  N  *  W  I  M  R  T  V  P  L  F  P  K  K  Y  W  L  L  S  N  N  I  G  L  W  V  I  P  T  P  H  P  H  N  E  M  P  P  K  M  L  S  D  H  M  N  S  Y  G  S  G  R  P  T  S  Y  E  Y  K  I  H  G  Y  A  R  R  F  T  P  R  N  F  D  R  A  G  S  L  D  R  *  L  H  G  T  S  L  V  L  M  D  P  *  I  I  P  D  D  L  A  F  I  T  V  F  I  F  F  S  V  P  C  L  V  R  *  *  L  *  K  L  S  Y  M  G  L  L  *  S  F  L  K  V  L  Y  K  H  F  F  P  R  Y  I  D  S  V  M  C  C  L  I  K  V  E  I  *  S   : K  *  E  K  S  K  K  </second_frame>
            <third_frame>   V  L  Q  L  L  Y  *  R  S  Y  C  W  P  C  L  V  A  N  *  V  K  R  S  K  *  L  *  Y  D  K  S  K  G  S  L  S  K  Y  T  L  I  V  D  D  H  T  L  K  I  L  G  *  *  P  S  Q  Y  M  V  *  *  L  I  F  E  V  P  T  E  V  C  V  C  C  G  *  I  H  H  H  F  S  F  L  L  L  *  L  N  M  L  L  F  V  T  A  L  F  L  L  K  *  K  C  Q  L  V  T  L  A  T  H  I  S  P  V  Y  *  S  P  A  R  K  R  K  K  Y  P  V  K  G  C  Y  R  K  K  N  N  W  Y  H  *  L  N  *  H  F  L  I  L  *  V  *  L  S  R  H  S  L  R  D  G  P  Y  F  A  S  R  R  S  C  H  S  K  R  Q  C  R  C  T  D  Q  G  E  E  D  N  R  R  H  E  V  E  L  Q  I  D  G  S  *  G  R  S  P  C  S  R  K  N  T  G  C  C  Q  T  I  L  D  S  G  *  Y  Q  L  H  I  L  T  M  R  C  H  R  R  C  C  L  T  I  *  T  R  M  D  Q  E  D  Q  H  L  M  N  T  K  S  M  V  M  Q  D  V  S  P  L  G  I  L  I  E  Q  G  P  L  T  G  D  S  T  A  H  L  *  S  *  W  I  H  K  L  Y  Q  M  I  *  R  L  *  L  S  S  F  S  S  L  F  H  V  S  L  D  N  D  S  K  N  *  A  T  W  D  Y  Y  E  A  F  *  K  S  F  I  N  I  S  S  L  D  I  *  T  L  *  C  V  V  *  L  K  W  K  F  D  L  :  N  E  K  R  A  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119459" stop="119701"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYRCDFQDILLEMDRILRPEGAVILRDNVDVLIKVKKIIGGMRWNFKLMDHEDGPLVPEKILVAVKQYWTLGDTNSTSSQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119604" stop="119840"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WIMRTVPLFPKKYWLLSNNIGLWVIPTPHPHNEMPPKMLSDHMNSYGSGRPTSYEYKIHGYARRFTPRNFDRAGSLDR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="122442" PGL_stop="122808"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122442" e_stop="122808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122442" e_stop="122808" e_length="367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122442" stop="122808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241290" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAATAGGAGCTAATCATCAAGATTTGCACTTCAAGAGAATTGATGATTCAGGAGTAGTTGGATTGAAATCAGATGAGCGTTTCGTCGTTCCTGTTTATGATCCTAAAGGTGGGAATGGGATACAAATGATCAAAAAGGAAACAGAAGAAGAGGAATCAAGAAAGTCACTAGAAGTGTTTGGCTTTTCAATAACAGAGAAAGAAAGAAGCAAAATGAGTCTTGAGAAGAACATAGGCATGTTAACATGGGATGCAATTGTTCCGAAAGCTGAAGAAATCGACATTATCAACATAGGTGCAAGTTCAAATGGAACCTATGAAGAAGATTACGCAGAAAGTGATGCAAGTTCAGACTTGTTTGAAATCG</gDNA_template>
            <first_frame> T  I  G  A  N  H  Q  D  L  H  F  K  R  I  D  D  S  G  V  V  G  L  K  S  D  E  R  F  V  V  P  V  Y  D  P  K  G  G  N  G  I  Q  M  I  K  K  E  T  E  E  E  E  S  R  K  S  L  E  V  F  G  F  S  I  T  E  K  E  R  S  K  M  S  L  E  K  N  I  G  M  L  T  W  D  A  I  V  P  K  A  E  E  I  D  I  I  N  I  G  A  S  S  N  G  T  Y  E  E  D  Y  A  E  S  D  A  S  S  D  L  F  E  I  </first_frame>
            <second_frame>  Q  *  E  L  I  I  K  I  C  T  S  R  E  L  M  I  Q  E  *  L  D  *  N  Q  M  S  V  S  S  F  L  F  M  I  L  K  V  G  M  G  Y  K  *  S  K  R  K  Q  K  K  R  N  Q  E  S  H  *  K  C  L  A  F  Q  *  Q  R  K  K  E  A  K  *  V  L  R  R  T  *  A  C  *  H  G  M  Q  L  F  R  K  L  K  K  S  T  L  S  T  *  V  Q  V  Q  M  E  P  M  K  K  I  T  Q  K  V  M  Q  V  Q  T  C  L  K  S </second_frame>
            <third_frame>   N  R  S  *  S  S  R  F  A  L  Q  E  N  *  *  F  R  S  S  W  I  E  I  R  *  A  F  R  R  S  C  L  *  S  *  R  W  E  W  D  T  N  D  Q  K  G  N  R  R  R  G  I  K  K  V  T  R  S  V  W  L  F  N  N  R  E  R  K  K  Q  N  E  S  *  E  E  H  R  H  V  N  M  G  C  N  C  S  E  S  *  R  N  R  H  Y  Q  H  R  C  K  F  K  W  N  L  *  R  R  L  R  R  K  *  C  K  F  R  L  V  *  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122442" stop="122807"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIGANHQDLHFKRIDDSGVVGLKSDERFVVPVYDPKGGNGIQMIKKETEEEESRKSLEVFGFSITEKERSKMSLEKNIGMLTWDAIVPKAEEIDIINIGASSNGTYEEDYAESDASSDLFEI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="127277" PGL_stop="127863"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127277" e_stop="127863"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="127277" e_stop="127863" e_length="587"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127277" stop="127812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127309" stop="127863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201249" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGGCAAAATATGGATTGTGATGCTAAAATTTGAGTGTTTCATGATTAAAAAAAGTTTTCTTATTAACCTTCACCAACAACTTATTACAAGTTCAGCTAATTGTAGAAAACAGAAAGCTAAAACACCTCCAAACATACTTTCTTATATGTGTATTCATCAACTTTTGCTAACATTACCATTTTCCTTAACACCATTATCTTTTTCGTTTACACTGTCAACACTCTTAGCTTCTTCAGTAGCTGTTACTTCTTTCTTTTCCTCGCGATCTTTCTCTTCTTTCTCCTTCTCAGCCGCCTTTGCTCTCTCTTCTTCCTCAGCCTTAAGTTTCGCTTCCTCTTTTGCAGTTTCGAGAGCTTTAATCAATCTCTCTAAACAAATATCTGCATTTTCCTTTGAAGACTTAGGCATCAAATTCTCAGCAATATCAGCAGGAGTCATATTAGTTTCCTCTAATAAACGACGAATCTGAGGAAAGTGAACATGAGATTCAACGACGTCAAGATAGTTATGTGCAAGAACTTTGAATGACTCAAAGCAACAGTATGATAGGACAATATGTTTATCCATTCTCCCCCTCCGGATTAG</gDNA_template>
            <first_frame> R  G  K  I  W  I  V  M  L  K  F  E  C  F  M  I  K  K  S  F  L  I  N  L  H  Q  Q  L  I  T  S  S  A  N  C  R  K  Q  K  A  K  T  P  P  N  I  L  S  Y  M  C  I  H  Q  L  L  L  T  L  P  F  S  L  T  P  L  S  F  S  F  T  L  S  T  L  L  A  S  S  V  A  V  T  S  F  F  S  S  R  S  F  S  S  F  S  F  S  A  A  F  A  L  S  S  S  S  A  L  S  F  A  S  S  F  A  V  S  R  A  L  I  N  L  S  K  Q  I  S  A  F  S  F  E  D  L  G  I  K  F  S  A  I  S  A  G  V  I  L  V  S  S  N  K  R  R  I  *  G  K  *  T  *  D  S  T  T  S  R  *  L  C  A  R  T  L  N  D  S  K  Q  Q  Y  D  R  T  I  C  L  S  I  L  P  L  R  I   </first_frame>
            <second_frame>  E  A  K  Y  G  L  *  C  *  N  L  S  V  S  *  L  K  K  V  F  L  L  T  F  T  N  N  L  L  Q  V  Q  L  I  V  E  N  R  K  L  K  H  L  Q  T  Y  F  L  I  C  V  F  I  N  F  C  *  H  Y  H  F  P  *  H  H  Y  L  F  R  L  H  C  Q  H  S  *  L  L  Q  *  L  L  L  L  S  F  P  R  D  L  S  L  L  S  P  S  Q  P  P  L  L  S  L  L  P  Q  P  *  V  S  L  P  L  L  Q  F  R  E  L  *  S  I  S  L  N  K  Y  L  H  F  P  L  K  T  *  A  S  N  S  Q  Q  Y  Q  Q  E  S  Y  *  F  P  L  I  N  D  E  S  E  E  S  E  H  E  I  Q  R  R  Q  D  S  Y  V  Q  E  L  *  M  T  Q  S  N  S  M  I  G  Q  Y  V  Y  P  F  S  P  S  G  L  </second_frame>
            <third_frame>   R  Q  N  M  D  C  D  A  K  I  *  V  F  H  D  *  K  K  F  S  Y  *  P  S  P  T  T  Y  Y  K  F  S  *  L  *  K  T  E  S  *  N  T  S  K  H  T  F  L  Y  V  Y  S  S  T  F  A  N  I  T  I  F  L  N  T  I  I  F  F  V  Y  T  V  N  T  L  S  F  F  S  S  C  Y  F  F  L  F  L  A  I  F  L  F  F  L  L  L  S  R  L  C  S  L  F  F  L  S  L  K  F  R  F  L  F  C  S  F  E  S  F  N  Q  S  L  *  T  N  I  C  I  F  L  *  R  L  R  H  Q  I  L  S  N  I  S  R  S  H  I  S  F  L  *  *  T  T  N  L  R  K  V  N  M  R  F  N  D  V  K  I  V  M  C  K  N  F  E  *  L  K  A  T  V  *  *  D  N  M  F  I  H  S  P  P  P  D  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127277" stop="127747"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGKIWIVMLKFECFMIKKSFLINLHQQLITSSANCRKQKAKTPPNILSYMCIHQLLLTLPFSLTPLSFSFTLSTLLASSVAVTSFFSSRSFSSFSFSAAFALSSSSALSFASSFAVSRALINLSKQISAFSFEDLGIKFSAISAGVILVSSNKRRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="129042" PGL_stop="127302"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="129042" e_stop="127302"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="129042" e_stop="127302" e_length="1741"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129042" stop="128486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129040" stop="128487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129029" stop="128496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129025" stop="128477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129022" stop="128620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129021" stop="128487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129019" stop="128473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128899" stop="128431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128799" stop="128457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128669" stop="128445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128652" stop="127927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128633" stop="128066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128416" stop="127936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128343" stop="127671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128245" stop="127931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128170" stop="127455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128161" stop="127614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127970" stop="127302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127970" stop="127367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127970" stop="127513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127970" stop="127599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127874" stop="127302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127864" stop="127406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353084" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAATACTCCAATTAACTTCAAGATGATGCAAGATCTATGGACTCAATTGGGTCCTACCATTGCAGCCATCATGTTCACCTGGACCATGTACCAGAACTACTTCCCTCACGAACTTCGCGGTCATATTAGGAGGTATACCGATAAACTCGTGAACTATTTCTATCCTTATATGCACATTATCTTTTATGAACTTGAAACTGAAGGGTGGTTTGAGCGGAGCAAAGCTTACGTATCGATTGAAAGGTACCTAAGCAAGAGCTCGAGCACACAAGCTAAGCGTCTCAAAGCCAATTCGGTGAAGGATGGTCAATCGCTTGTCCTAACCATGGATGATCATGAGGAGATAACGGATGAATATAAAGGCGAGAAGGTTTGGTGGATTTCGAGCAAAAAACCAGCGAGCAGGCAGACAATATCTTTGTATAAGGAGGATGAGAAGAGATATTTCAAGCTAAAATTTCACAAAAAGAATCGCGACCTTGTCACAAATTCATACTTGAAGTATGTGTTGGATGAAGGAAAGGCGATATCTGTGAAAGAACGACAGAGAAAGCTGTACACGAACAATAAGGGAGATGGAGGTGGTTATAGATACAGGGGAGGGAGGATGTGGAGTGGAGTAGTATTCGAGCATCCGTCAACATTTGATACTCTAGCTATGGATCCAAACAAGAAGCAAGAGATCATAGATGATCTCGAAACATTTAGCAAGTCAAAAGACTATTACGCAAAGATTGGTAAGGCGTGGAAGCGTGGTTATCTTCTTTATGGTCCTCCAGGAACCGGTAAATCTAGCATGATTGCTGCTATGGCTAATTACTTGAAGTATGACGTCTATGATCTTGAGCTGACATCGGTTAAGGACAATACCGAGCTAAGAAAACTCCTGATAGATACAACAGGTAAATCTATTATTGTGATTGAAGACATAGATTGTTCCCTTGACCTAACAGGTCAACGAGAGACGAATAAGAAGAAGAAAGAAGAGGAAGATAAAGGAAAAACTGAGGAAGATGCCGTCAAGGAGAAGATGAAAAAAGGCGGAGAGACGAAAGAAAAGCAAAGTGAGGTAACTTTATCAGGACTATTGAACTTCATTGATGGTCTATGGTCAGCTATTGGCGGTGAAAGGCTAATCGTCTTCACTACAAACTACGTGGAGAAGCTTGATCCTGCTCTAATCCGGAGGGGGAGAATGGATAAACATATTGTCCTATCATACTGTTGCTTTGAGTCATTCAAAGTTCTTGCACATAACTATCTTGACGTCGTTGAATCTCATGTTCACTTTCCTCAGATTCGTCGTTTATTAGAGGAAACTAATATGACTCCTGCTGATATTGCTGAGAATTTGATGCCTAAGTCTTCAAAGGAAAATGCAGATATTTGTTTAGAGAGATTGATTAAAGCTCTCGAAACTGCAAAAGAGGAAGCGAAACTTAAGGCTGAGGAAGAAGAGAGAGCAAAGGCGGCTGAGAAGGAGAAAGAAGAGAAAGATCGCGAGGAAAAGAAAGAAGTAACAGCTACTGAAGAAGCTAAGAGTGTTGACAGTGTAAACGAAAAAGATAATGGTGTTAAGGAAAATGGTAATGTTAGCAAAAGTTGATGAATACACATATAAGAAAGTATGTTTGGAGGTGTTTTAGCTTTCTGTTTTCTACAATTAGCTGAACTTGTAATAAGTTGTTGGTGAAGGTTAATAAGAAAACTTTTTTTAATCATGAAACACTCAAATTTTA</gDNA_template>
            <first_frame> L  N  T  P  I  N  F  K  M  M  Q  D  L  W  T  Q  L  G  P  T  I  A  A  I  M  F  T  W  T  M  Y  Q  N  Y  F  P  H  E  L  R  G  H  I  R  R  Y  T  D  K  L  V  N  Y  F  Y  P  Y  M  H  I  I  F  Y  E  L  E  T  E  G  W  F  E  R  S  K  A  Y  V  S  I  E  R  Y  L  S  K  S  S  S  T  Q  A  K  R  L  K  A  N  S  V  K  D  G  Q  S  L  V  L  T  M  D  D  H  E  E  I  T  D  E  Y  K  G  E  K  V  W  W  I  S  S  K  K  P  A  S  R  Q  T  I  S  L  Y  K  E  D  E  K  R  Y  F  K  L  K  F  H  K  K  N  R  D  L  V  T  N  S  Y  L  K  Y  V  L  D  E  G  K  A  I  S  V  K  E  R  Q  R  K  L  Y  T  N  N  K  G  D  G  G  G  Y  R  Y  R  G  G  R  M  W  S  G  V  V  F  E  H  P  S  T  F  D  T  L  A  M  D  P  N  K  K  Q  E  I  I  D  D  L  E  T  F  S  K  S  K  D  Y  Y  A  K  I  G  K  A  W  K  R  G  Y  L  L  Y  G  P  P  G  T  G  K  S  S  M  I  A  A  M  A  N  Y  L  K  Y  D  V  Y  D  L  E  L  T  S  V  K  D  N  T  E  L  R  K  L  L  I  D  T  T  G  K  S  I  I  V  I  E  D  I  D  C  S  L  D  L  T  G  Q  R  E  T  N  K  K  K  K  E  E  E  D  K  G  K  T  E  E  D  A  V  K  E  K  M  K  K  G  G  E  T  K  E  K  Q  S  E  V  T  L  S  G  L  L  N  F  I  D  G  L  W  S  A  I  G  G  E  R  L  I  V  F  T  T  N  Y  V  E  K  L  D  P  A  L  I  R  R  G  R  M  D  K  H  I  V  L  S  Y  C  C  F  E  S  F  K  V  L  A  H  N  Y  L  D  V  V  E  S  H  V  H  F  P  Q  I  R  R  L  L  E  E  T  N  M  T  P  A  D  I  A  E  N  L  M  P  K  S  S  K  E  N  A  D  I  C  L  E  R  L  I  K  A  L  E  T  A  K  E  E  A  K  L  K  A  E  E  E  E  R  A  K  A  A  E  K  E  K  E  E  K  D  R  E  E  K  K  E  V  T  A  T  E  E  A  K  S  V  D  S  V  N  E  K  D  N  G  V  K  E  N  G  N  V  S  K  S  *  *  I  H  I  *  E  S  M  F  G  G  V  L  A  F  C  F  L  Q  L  A  E  L  V  I  S  C  W  *  R  L  I  R  K  L  F  L  I  M  K  H  S  N  F  </first_frame>
            <second_frame>  *  I  L  Q  L  T  S  R  *  C  K  I  Y  G  L  N  W  V  L  P  L  Q  P  S  C  S  P  G  P  C  T  R  T  T  S  L  T  N  F  A  V  I  L  G  G  I  P  I  N  S  *  T  I  S  I  L  I  C  T  L  S  F  M  N  L  K  L  K  G  G  L  S  G  A  K  L  T  Y  R  L  K  G  T  *  A  R  A  R  A  H  K  L  S  V  S  K  P  I  R  *  R  M  V  N  R  L  S  *  P  W  M  I  M  R  R  *  R  M  N  I  K  A  R  R  F  G  G  F  R  A  K  N  Q  R  A  G  R  Q  Y  L  C  I  R  R  M  R  R  D  I  S  S  *  N  F  T  K  R  I  A  T  L  S  Q  I  H  T  *  S  M  C  W  M  K  E  R  R  Y  L  *  K  N  D  R  E  S  C  T  R  T  I  R  E  M  E  V  V  I  D  T  G  E  G  G  C  G  V  E  *  Y  S  S  I  R  Q  H  L  I  L  *  L  W  I  Q  T  R  S  K  R  S  *  M  I  S  K  H  L  A  S  Q  K  T  I  T  Q  R  L  V  R  R  G  S  V  V  I  F  F  M  V  L  Q  E  P  V  N  L  A  *  L  L  L  W  L  I  T  *  S  M  T  S  M  I  L  S  *  H  R  L  R  T  I  P  S  *  E  N  S  *  *  I  Q  Q  V  N  L  L  L  *  L  K  T  *  I  V  P  L  T  *  Q  V  N  E  R  R  I  R  R  R  K  K  R  K  I  K  E  K  L  R  K  M  P  S  R  R  R  *  K  K  A  E  R  R  K  K  S  K  V  R  *  L  Y  Q  D  Y  *  T  S  L  M  V  Y  G  Q  L  L  A  V  K  G  *  S  S  S  L  Q  T  T  W  R  S  L  I  L  L  *  S  G  G  G  E  W  I  N  I  L  S  Y  H  T  V  A  L  S  H  S  K  F  L  H  I  T  I  L  T  S  L  N  L  M  F  T  F  L  R  F  V  V  Y  *  R  K  L  I  *  L  L  L  I  L  L  R  I  *  C  L  S  L  Q  R  K  M  Q  I  F  V  *  R  D  *  L  K  L  S  K  L  Q  K  R  K  R  N  L  R  L  R  K  K  R  E  Q  R  R  L  R  R  R  K  K  R  K  I  A  R  K  R  K  K  *  Q  L  L  K  K  L  R  V  L  T  V  *  T  K  K  I  M  V  L  R  K  M  V  M  L  A  K  V  D  E  Y  T  Y  K  K  V  C  L  E  V  F  *  L  S  V  F  Y  N  *  L  N  L  *  *  V  V  G  E  G  *  *  E  N  F  F  *  S  *  N  T  Q  I  L </second_frame>
            <third_frame>   E  Y  S  N  *  L  Q  D  D  A  R  S  M  D  S  I  G  S  Y  H  C  S  H  H  V  H  L  D  H  V  P  E  L  L  P  S  R  T  S  R  S  Y  *  E  V  Y  R  *  T  R  E  L  F  L  S  L  Y  A  H  Y  L  L  *  T  *  N  *  R  V  V  *  A  E  Q  S  L  R  I  D  *  K  V  P  K  Q  E  L  E  H  T  S  *  A  S  Q  S  Q  F  G  E  G  W  S  I  A  C  P  N  H  G  *  S  *  G  D  N  G  *  I  *  R  R  E  G  L  V  D  F  E  Q  K  T  S  E  Q  A  D  N  I  F  V  *  G  G  *  E  E  I  F  Q  A  K  I  S  Q  K  E  S  R  P  C  H  K  F  I  L  E  V  C  V  G  *  R  K  G  D  I  C  E  R  T  T  E  K  A  V  H  E  Q  *  G  R  W  R  W  L  *  I  Q  G  R  E  D  V  E  W  S  S  I  R  A  S  V  N  I  *  Y  S  S  Y  G  S  K  Q  E  A  R  D  H  R  *  S  R  N  I  *  Q  V  K  R  L  L  R  K  D  W  *  G  V  E  A  W  L  S  S  L  W  S  S  R  N  R  *  I  *  H  D  C  C  Y  G  *  L  L  E  V  *  R  L  *  S  *  A  D  I  G  *  G  Q  Y  R  A  K  K  T  P  D  R  Y  N  R  *  I  Y  Y  C  D  *  R  H  R  L  F  P  *  P  N  R  S  T  R  D  E  *  E  E  E  R  R  G  R  *  R  K  N  *  G  R  C  R  Q  G  E  D  E  K  R  R  R  D  E  R  K  A  K  *  G  N  F  I  R  T  I  E  L  H  *  W  S  M  V  S  Y  W  R  *  K  A  N  R  L  H  Y  K  L  R  G  E  A  *  S  C  S  N  P  E  G  E  N  G  *  T  Y  C  P  I  I  L  L  L  *  V  I  Q  S  S  C  T  *  L  S  *  R  R  *  I  S  C  S  L  S  S  D  S  S  F  I  R  G  N  *  Y  D  S  C  *  Y  C  *  E  F  D  A  *  V  F  K  G  K  C  R  Y  L  F  R  E  I  D  *  S  S  R  N  C  K  R  G  S  E  T  *  G  *  G  R  R  E  S  K  G  G  *  E  G  E  R  R  E  R  S  R  G  K  E  R  S  N  S  Y  *  R  S  *  E  C  *  Q  C  K  R  K  R  *  W  C  *  G  K  W  *  C  *  Q  K  L  M  N  T  H  I  R  K  Y  V  W  R  C  F  S  F  L  F  S  T  I  S  *  T  C  N  K  L  L  V  K  V  N  K  K  T  F  F  N  H  E  T  L  K  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129042" stop="127435"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1605</number_coding_nucleotides>
                  <number_encoded_amino_acids>535</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNTPINFKMMQDLWTQLGPTIAAIMFTWTMYQNYFPHELRGHIRRYTDKLVNYFYPYMHIIFYELETEGWFERSKAYVSIERYLSKSSSTQAKRLKANSVKDGQSLVLTMDDHEEITDEYKGEKVWWISSKKPASRQTISLYKEDEKRYFKLKFHKKNRDLVTNSYLKYVLDEGKAISVKERQRKLYTNNKGDGGGYRYRGGRMWSGVVFEHPSTFDTLAMDPNKKQEIIDDLETFSKSKDYYAKIGKAWKRGYLLYGPPGTGKSSMIAAMANYLKYDVYDLELTSVKDNTELRKLLIDTTGKSIIVIEDIDCSLDLTGQRETNKKKKEEEDKGKTEEDAVKEKMKKGGETKEKQSEVTLSGLLNFIDGLWSAIGGERLIVFTTNYVEKLDPALIRRGRMDKHIVLSYCCFESFKVLAHNYLDVVESHVHFPQIRRLLEETNMTPADIAENLMPKSSKENADICLERLIKALETAKEEAKLKAEEEERAKAAEKEKEEKDREEKKEVTATEEAKSVDSVNEKDNGVKENGNVSKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="133090" PGL_stop="133877"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133090" e_stop="133877"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="133090" e_stop="133877" e_length="788"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133090" stop="133877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133116" stop="133638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414588" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGGAACTAAAGAATTAAAGGCACACAATGTATTTCAGTAATCATTTATCTCTCTGCCTGCAGTTGAATATACCAGATATCAGATCTTGAGACAATGTTTAAAAAGGAAACTATTATTCGACCCTATTCCTTTCTCAAACCTCGAAACCAACATCAGTTATACAACAATATATGCAGAACCCTTTTAACTATATACTCTATACAAATTAAATGAGTAAACTAAGCATTAGAATAATGCAAAAATTGCAGTGGTACATACTCTATGACAAACATGTACTAACAGTATTGTCAATGTTCCTTGCAATCTTTAACAGGCTTAGCTTCAAAACCTCCTTCTGGTCTCCTCTCAAGTTCATATGGCATGTAGGTACCAAGTATCCTATCCCACGTCACAAAGAAAGGCTGTGAATAGTTATACTTGGTCCCGTAAAGCTGGTGATGGATATCATGGTAAGCGGAGTTGTTTTTAAAGAAGATATGGAAGAGATTTCCGGGCAACCATAGCCCGCAGTGATCATCAACCGTCTTGATCGTAGCAAATGAGAAAAAGAAGATGGAGGTACGTGGTGACATCCCGGAGACAAGGAAAGCTAGAGCCCCGCCGATTGTGTCAAGAATCAGACCCTCCAAAGGGTGGTTGTACAAAGCTCCAAATGCATACGGAACAATTAGCCGGTGATGTTGAGCATGGATATGTTTGTACAAGAACTTGTTTTGGTGCATGTACCGATGCATAAAATATTGCCAAGTATCTAACATCAACATGCCAACAAATAACTGTCTGCCA</gDNA_template>
            <first_frame> L  G  T  K  E  L  K  A  H  N  V  F  Q  *  S  F  I  S  L  P  A  V  E  Y  T  R  Y  Q  I  L  R  Q  C  L  K  R  K  L  L  F  D  P  I  P  F  S  N  L  E  T  N  I  S  Y  T  T  I  Y  A  E  P  F  *  L  Y  T  L  Y  K  L  N  E  *  T  K  H  *  N  N  A  K  I  A  V  V  H  T  L  *  Q  T  C  T  N  S  I  V  N  V  P  C  N  L  *  Q  A  *  L  Q  N  L  L  L  V  S  S  Q  V  H  M  A  C  R  Y  Q  V  S  Y  P  T  S  Q  R  K  A  V  N  S  Y  T  W  S  R  K  A  G  D  G  Y  H  G  K  R  S  C  F  *  R  R  Y  G  R  D  F  R  A  T  I  A  R  S  D  H  Q  P  S  *  S  *  Q  M  R  K  R  R  W  R  Y  V  V  T  S  R  R  Q  G  K  L  E  P  R  R  L  C  Q  E  S  D  P  P  K  G  G  C  T  K  L  Q  M  H  T  E  Q  L  A  G  D  V  E  H  G  Y  V  C  T  R  T  C  F  G  A  C  T  D  A  *  N  I  A  K  Y  L  T  S  T  C  Q  Q  I  T  V  C   </first_frame>
            <second_frame>  L  E  L  K  N  *  R  H  T  M  Y  F  S  N  H  L  S  L  C  L  Q  L  N  I  P  D  I  R  S  *  D  N  V  *  K  G  N  Y  Y  S  T  L  F  L  S  Q  T  S  K  P  T  S  V  I  Q  Q  Y  M  Q  N  P  F  N  Y  I  L  Y  T  N  *  M  S  K  L  S  I  R  I  M  Q  K  L  Q  W  Y  I  L  Y  D  K  H  V  L  T  V  L  S  M  F  L  A  I  F  N  R  L  S  F  K  T  S  F  W  S  P  L  K  F  I  W  H  V  G  T  K  Y  P  I  P  R  H  K  E  R  L  *  I  V  I  L  G  P  V  K  L  V  M  D  I  M  V  S  G  V  V  F  K  E  D  M  E  E  I  S  G  Q  P  *  P  A  V  I  I  N  R  L  D  R  S  K  *  E  K  E  D  G  G  T  W  *  H  P  G  D  K  E  S  *  S  P  A  D  C  V  K  N  Q  T  L  Q  R  V  V  V  Q  S  S  K  C  I  R  N  N  *  P  V  M  L  S  M  D  M  F  V  Q  E  L  V  L  V  H  V  P  M  H  K  I  L  P  S  I  *  H  Q  H  A  N  K  *  L  S  A  </second_frame>
            <third_frame>   W  N  *  R  I  K  G  T  Q  C  I  S  V  I  I  Y  L  S  A  C  S  *  I  Y  Q  I  S  D  L  E  T  M  F  K  K  E  T  I  I  R  P  Y  S  F  L  K  P  R  N  Q  H  Q  L  Y  N  N  I  C  R  T  L  L  T  I  Y  S  I  Q  I  K  *  V  N  *  A  L  E  *  C  K  N  C  S  G  T  Y  S  M  T  N  M  Y  *  Q  Y  C  Q  C  S  L  Q  S  L  T  G  L  A  S  K  P  P  S  G  L  L  S  S  S  Y  G  M  *  V  P  S  I  L  S  H  V  T  K  K  G  C  E  *  L  Y  L  V  P  *  S  W  *  W  I  S  W  *  A  E  L  F  L  K  K  I  W  K  R  F  P  G  N  H  S  P  Q  *  S  S  T  V  L  I  V  A  N  E  K  K  K  M  E  V  R  G  D  I  P  E  T  R  K  A  R  A  P  P  I  V  S  R  I  R  P  S  K  G  W  L  Y  K  A  P  N  A  Y  G  T  I  S  R  *  C  *  A  W  I  C  L  Y  K  N  L  F  W  C  M  Y  R  C  I  K  Y  C  Q  V  S  N  I  N  M  P  T  N  N  C  L  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133627" stop="133827"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMRKRRWRYVVTSRRQGKLEPRRLCQESDPPKGGCTKLQMHTEQLAGDVEHGYVCTRTCFGACTDA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133301" stop="133498"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSKLSIRIMQKLQWYILYDKHVLTVLSMFLAIFNRLSFKTSFWSPLKFIWHVGTKYPIPRHKERL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="133704" PGL_stop="133098"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133704" e_stop="133098"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="133704" e_stop="133098" e_length="607"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133704" stop="133329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133590" stop="133098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209747" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133492" stop="133256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606795" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGACACAATCGGCGGGGCTCTAGCTTTCCTTGTCTCCGGGATGTCACCACGTACCTCCATCTTCTTTTTCTCATTTGCTACGATCAAGACGGTTGATGATCACTGCGGGCTATGGTTGCCCGGAAATCTCTTCCATATCTTCTTTAAAAACAACTCCGCTTACCATGATATCCATCACCAGCTTTACGGGACCAAGTATAACTATTCACAGCCTTTCTTTGTGACGTGGGATAGGATACTTGGTACCTACATGCCATATGAACTTGAGAGGAGACCAGAAGGAGGTTTTGAAGCTAAGCCTGTTAAAGATTGCAAGGAACATTGACAATACTGTTAGTACATGTTTGTCATAGAGTATGTACCACTGCAATTTTTGCATTATTCTAATGCTTAGTTTACTCATTTAATTTGTATAGAGTATATAGTTAAAAGGGTTCTGCATATATTGTTGTATAACTGATGTTGGTTTCGAGGTTTGAGAAAGGAATAGGGTCGAATAATAGTTTCCTTTTTAAACATTGTCTCAAGATCTGATATCTGGTATATTCAACTGCAGGCAGAGAGATAAATGATTACTGAAATACATTGTGTGCCTTTAATTCTTTA</gDNA_template>
            <first_frame> L  T  Q  S  A  G  L  *  L  S  L  S  P  G  C  H  H  V  P  P  S  S  F  S  H  L  L  R  S  R  R  L  M  I  T  A  G  Y  G  C  P  E  I  S  S  I  S  S  L  K  T  T  P  L  T  M  I  S  I  T  S  F  T  G  P  S  I  T  I  H  S  L  S  L  *  R  G  I  G  Y  L  V  P  T  C  H  M  N  L  R  G  D  Q  K  E  V  L  K  L  S  L  L  K  I  A  R  N  I  D  N  T  V  S  T  C  L  S  *  S  M  Y  H  C  N  F  C  I  I  L  M  L  S  L  L  I  *  F  V  *  S  I  *  L  K  G  F  C  I  Y  C  C  I  T  D  V  G  F  E  V  *  E  R  N  R  V  E  *  *  F  P  F  *  T  L  S  Q  D  L  I  S  G  I  F  N  C  R  Q  R  D  K  *  L  L  K  Y  I  V  C  L  *  F  F  </first_frame>
            <second_frame>  *  H  N  R  R  G  S  S  F  P  C  L  R  D  V  T  T  Y  L  H  L  L  F  L  I  C  Y  D  Q  D  G  *  *  S  L  R  A  M  V  A  R  K  S  L  P  Y  L  L  *  K  Q  L  R  L  P  *  Y  P  S  P  A  L  R  D  Q  V  *  L  F  T  A  F  L  C  D  V  G  *  D  T  W  Y  L  H  A  I  *  T  *  E  E  T  R  R  R  F  *  S  *  A  C  *  R  L  Q  G  T  L  T  I  L  L  V  H  V  C  H  R  V  C  T  T  A  I  F  A  L  F  *  C  L  V  Y  S  F  N  L  Y  R  V  Y  S  *  K  G  S  A  Y  I  V  V  *  L  M  L  V  S  R  F  E  K  G  I  G  S  N  N  S  F  L  F  K  H  C  L  K  I  *  Y  L  V  Y  S  T  A  G  R  E  I  N  D  Y  *  N  T  L  C  A  F  N  S  L </second_frame>
            <third_frame>   D  T  I  G  G  A  L  A  F  L  V  S  G  M  S  P  R  T  S  I  F  F  F  S  F  A  T  I  K  T  V  D  D  H  C  G  L  W  L  P  G  N  L  F  H  I  F  F  K  N  N  S  A  Y  H  D  I  H  H  Q  L  Y  G  T  K  Y  N  Y  S  Q  P  F  F  V  T  W  D  R  I  L  G  T  Y  M  P  Y  E  L  E  R  R  P  E  G  G  F  E  A  K  P  V  K  D  C  K  E  H  *  Q  Y  C  *  Y  M  F  V  I  E  Y  V  P  L  Q  F  L  H  Y  S  N  A  *  F  T  H  L  I  C  I  E  Y  I  V  K  R  V  L  H  I  L  L  Y  N  *  C  W  F  R  G  L  R  K  E  *  G  R  I  I  V  S  F  L  N  I  V  S  R  S  D  I  W  Y  I  Q  L  Q  A  E  R  *  M  I  T  E  I  H  C  V  P  L  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133702" stop="133379"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTIGGALAFLVSGMSPRTSIFFFSFATIKTVDDHCGLWLPGNLFHIFFKNNSAYHDIHHQLYGTKYNYSQPFFVTWDRILGTYMPYELERRPEGGFEAKPVKDCKEH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="137079" PGL_stop="133864"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="137079" e_stop="136401"/>
            <exon e_start="133933" e_stop="133864"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.995" e_score="0.897"/>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.897">
            <gDNA_exon_boundary e_start="137079" e_stop="136401" e_length="679"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.995">
            <gDNA_intron_boundary i_start="136400" i_stop="133934" i_length="2467"/>
          </intron>
          <exon e_serial="2" e_score="0.943">
            <gDNA_exon_boundary e_start="133933" e_stop="133864" e_length="70"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137079" stop="136560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137073" stop="136401"/>
              <exon start="133933" stop="133864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137018" stop="136789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379420" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAAACAATAATATCCTCTCTGAAAAATTGATTATTTTTGTTAAATTTTTTCTGAATTTTGTTTTTTTTTTGCTGTTTGAAATTCCTTCCAATTCTATTTGGAAGAGAATTTCAATCAAACCATATATCTCCACTGTTCTCTTTCTCTACAAACCCTAATTTCAATTTTATACAAAGTTTGAATCTTTTACAAAGTTTCAAAGAAATCTCAGTTTTTCTTTTATTGGGTATTTGTTTGTTTTCTTTTTAAGGGCAATTTTGAAAAAGATAGTGATTTTCTTTTTCCTTTTAAGGGTAATTTTCAAAAAAAAAAAAAAAGATTTAAAAAGGAACAAATTTTGTTTCTTTATTGGGTTTTTTCAATTAAGGGTGATTTCAAGAAGGTATAAAGGAAGGATCTTGGTAATAGTTTGTATTTTTGAGATGGTGGGTAGTGTGAATATTGATCAACAGGGGAAGGGAGGATATGTGTCAGATGAAGTTTTGGGAACATTTATACCAATAGTTGTGTATTGGGTATATTCAGGATTGTATTTAATGCTTGGGAATATGGATAATTATAGGTTGCATTCTAAGAAAGATGAGGATGAGAAGAATTTGGTGTCAAAAAAAGAGGTTGTTAAAGGTGTTCTTCTCCAACAGATTGTTCAGGCTGCTGTTGCTACGGTTCTTTTCGCG : GTCACGGGAGATGATGGTGAATCTGGTGGGGATCAACACGCTTCGATCTTTGTTCTTGGCAGACAGTTAT</gDNA_template>
            <first_frame> A  K  Q  *  Y  P  L  *  K  I  D  Y  F  C  *  I  F  S  E  F  C  F  F  F  A  V  *  N  S  F  Q  F  Y  L  E  E  N  F  N  Q  T  I  Y  L  H  C  S  L  S  L  Q  T  L  I  S  I  L  Y  K  V  *  I  F  Y  K  V  S  K  K  S  Q  F  F  F  Y  W  V  F  V  C  F  L  F  K  G  N  F  E  K  D  S  D  F  L  F  P  F  K  G  N  F  Q  K  K  K  K  R  F  K  K  E  Q  I  L  F  L  Y  W  V  F  S  I  K  G  D  F  K  K  V  *  R  K  D  L  G  N  S  L  Y  F  *  D  G  G  *  C  E  Y  *  S  T  G  E  G  R  I  C  V  R  *  S  F  G  N  I  Y  T  N  S  C  V  L  G  I  F  R  I  V  F  N  A  W  E  Y  G  *  L  *  V  A  F  *  E  R  *  G  *  E  E  F  G  V  K  K  R  G  C  *  R  C  S  S  P  T  D  C  S  G  C  C  C  Y  G  S  F  R   : G  H  G  R  *  W  *  I  W  W  G  S  T  R  F  D  L  C  S  W  Q  T  V   </first_frame>
            <second_frame>  Q  N  N  N  I  L  S  E  K  L  I  I  F  V  K  F  F  L  N  F  V  F  F  L  L  F  E  I  P  S  N  S  I  W  K  R  I  S  I  K  P  Y  I  S  T  V  L  F  L  Y  K  P  *  F  Q  F  Y  T  K  F  E  S  F  T  K  F  Q  R  N  L  S  F  S  F  I  G  Y  L  F  V  F  F  L  R  A  I  L  K  K  I  V  I  F  F  F  L  L  R  V  I  F  K  K  K  K  K  D  L  K  R  N  K  F  C  F  F  I  G  F  F  Q  L  R  V  I  S  R  R  Y  K  G  R  I  L  V  I  V  C  I  F  E  M  V  G  S  V  N  I  D  Q  Q  G  K  G  G  Y  V  S  D  E  V  L  G  T  F  I  P  I  V  V  Y  W  V  Y  S  G  L  Y  L  M  L  G  N  M  D  N  Y  R  L  H  S  K  K  D  E  D  E  K  N  L  V  S  K  K  E  V  V  K  G  V  L  L  Q  Q  I  V  Q  A  A  V  A  T  V  L  F  A  :  V  T  G  D  D  G  E  S  G  G  D  Q  H  A  S  I  F  V  L  G  R  Q  L  </second_frame>
            <third_frame>   K  T  I  I  S  S  L  K  N  *  L  F  L  L  N  F  F  *  I  L  F  F  F  C  C  L  K  F  L  P  I  L  F  G  R  E  F  Q  S  N  H  I  S  P  L  F  S  F  S  T  N  P  N  F  N  F  I  Q  S  L  N  L  L  Q  S  F  K  E  I  S  V  F  L  L  L  G  I  C  L  F  S  F  *  G  Q  F  *  K  R  *  *  F  S  F  S  F  *  G  *  F  S  K  K  K  K  K  I  *  K  G  T  N  F  V  S  L  L  G  F  F  N  *  G  *  F  Q  E  G  I  K  E  G  S  W  *  *  F  V  F  L  R  W  W  V  V  *  I  L  I  N  R  G  R  E  D  M  C  Q  M  K  F  W  E  H  L  Y  Q  *  L  C  I  G  Y  I  Q  D  C  I  *  C  L  G  I  W  I  I  I  G  C  I  L  R  K  M  R  M  R  R  I  W  C  Q  K  K  R  L  L  K  V  F  F  S  N  R  L  F  R  L  L  L  L  R  F  F  S  R :   S  R  E  M  M  V  N  L  V  G  I  N  T  L  R  S  L  F  L  A  D  S  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136919" stop="136401"/>
                    <exon start="133933" stop="133865"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQFYTKFESFTKFQRNLSFSFIGYLFVFFLRAILKKIVIFFFLLRVIFKKKKKDLKRNKFCFFIGFFQLRVISRRYKGRILVIVCIFEMVGSVNIDQQGKGGYVSDEVLGTFIPIVVYWVYSGLYLMLGNMDNYRLHSKKDEDEKNLVSKKEVVKGVLLQQIVQAAVATVLFAVTGDDGESGGDQHASIFVLGRQL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="142480" PGL_stop="139600"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="142480" e_stop="142356"/>
            <exon e_start="142262" e_stop="142216"/>
            <exon e_start="141631" e_stop="141527"/>
            <exon e_start="141394" e_stop="141314"/>
            <exon e_start="141035" e_stop="140924"/>
            <exon e_start="140819" e_stop="140757"/>
            <exon e_start="140620" e_stop="140533"/>
            <exon e_start="140418" e_stop="140351"/>
            <exon e_start="139994" e_stop="139898"/>
            <exon e_start="139795" e_stop="139600"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.346" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.836" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="142480" e_stop="142356" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.346" acc_prob="0.999">
            <gDNA_intron_boundary i_start="142355" i_stop="142263" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="142262" e_stop="142216" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="142215" i_stop="141632" i_length="584"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="141631" e_stop="141527" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.903" acc_prob="0.995">
            <gDNA_intron_boundary i_start="141526" i_stop="141395" i_length="132"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="141394" e_stop="141314" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.836">
            <gDNA_intron_boundary i_start="141313" i_stop="141036" i_length="278"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="141035" e_stop="140924" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.996">
            <gDNA_intron_boundary i_start="140923" i_stop="140820" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="140819" e_stop="140757" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.986">
            <gDNA_intron_boundary i_start="140756" i_stop="140621" i_length="136"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="140620" e_stop="140533" e_length="88"/>
          </exon>
          <intron i_serial="7" don_prob="0.922" acc_prob="0.997">
            <gDNA_intron_boundary i_start="140532" i_stop="140419" i_length="114"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="140418" e_stop="140351" e_length="68"/>
          </exon>
          <intron i_serial="8" don_prob="0.923" acc_prob="0.997">
            <gDNA_intron_boundary i_start="140350" i_stop="139995" i_length="356"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="139994" e_stop="139898" e_length="97"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="139897" i_stop="139796" i_length="102"/>
          </intron>
          <exon e_serial="10" e_score="0.949">
            <gDNA_exon_boundary e_start="139795" e_stop="139600" e_length="196"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142480" stop="142356"/>
              <exon start="142262" stop="142216"/>
              <exon start="141631" stop="141527"/>
              <exon start="141394" stop="141314"/>
              <exon start="141035" stop="140924"/>
              <exon start="140819" stop="140757"/>
              <exon start="140620" stop="140533"/>
              <exon start="140418" stop="140351"/>
              <exon start="139994" stop="139898"/>
              <exon start="139795" stop="139747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142469" stop="142356"/>
              <exon start="142262" stop="142216"/>
              <exon start="141631" stop="141527"/>
              <exon start="141394" stop="141314"/>
              <exon start="141035" stop="140924"/>
              <exon start="140819" stop="140757"/>
              <exon start="140620" stop="140533"/>
              <exon start="140418" stop="140351"/>
              <exon start="139994" stop="139898"/>
              <exon start="139795" stop="139600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142468" stop="142356"/>
              <exon start="142262" stop="142216"/>
              <exon start="141631" stop="141527"/>
              <exon start="141394" stop="141314"/>
              <exon start="141035" stop="140924"/>
              <exon start="140819" stop="140757"/>
              <exon start="140620" stop="140533"/>
              <exon start="140418" stop="140363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327633" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAAATGGATCTTTCCGACATCGCCCGAAAGCTCGGTCTCACTGAGACCAAACATCTGGTTCGCAAAGCGGCCGAGCTCCGACGACTCGCCGATGTACAGTTCGATTCCTCCGCCATTGGCGTT : GGGGAGATCTGCAAGGCTATTATTTGCTTAGAGATTGCTGCTTCTAG : GATGGATGTGGTGTTTGATCGTCAGGCAGCGATAAAATTGAGTGGGATGTCGGAGAAGGCTTACAACAGATCATTCACTTCAATGCAGAATGGAATTGGAGTGAA : AAACAAGCTTGATATTAGAGAATTGGCAATTCAGTTTGGGTGTATCAGGCTCATTCCTTTTGTTCAAAAAGGTCTATCATT : ATACAAAGACCGGTTTCGTACATCCTTGCCACCTTCTAGAAGGGCAAGTGCTGATTTCAGTCGACCTGTGTTCACTGCTGCTGCGTTCTATCTGTGTGCAAAAAGGCACAAG : CTCAAGGTTGATAAAATGAAGCTAATTGAACTTTGTGGAACATCAGAACCTGAATTTGCTAGT : GTTTCTACCTCAATGAATGATCTTTGTTTTGATGTTTTTGGGACATCAAAGGAGAAAAAGGATCCCAAGACAGTGAAGGGGAACCGAG : AACTGCTCGATGCATTACCTGAAAAAAGGAGGGTTGAAGACGGTGGCTATTCATCCGAGGATGATAAT : TCATCAGCTTACAAGAAGCGTAAACGCATGGATGAACATGCTTATCAGGAATGGAAATCTACTGTCCTCTCATCAAAAAACCAAAGCGGCCAAAAAG : CTCCTAAACAAACCAAACAAGCCCGGCTGGACTTCATGAAGAAAGTTCCTGAAACTAAAGTCCAAGCAACATAAGTCTCCATTGTCCTTCAATTAGACAAATTTTGGTTGATTTTATCAAACAGTGGACACTAAATGATTGGGCAGAAACTTCCTTTTGGTTTATTGGTACCATAGTTTACCTTTTTTAAAAAAAA</gDNA_template>
            <first_frame> N  K  W  I  F  P  T  S  P  E  S  S  V  S  L  R  P  N  I  W  F  A  K  R  P  S  S  D  D  S  P  M  Y  S  S  I  P  P  P  L  A  L :   G  R  S  A  R  L  L  F  A  *  R  L  L  L  L   : G  W  M  W  C  L  I  V  R  Q  R  *  N  *  V  G  C  R  R  R  L  T  T  D  H  S  L  Q  C  R  M  E  L  E  *   : K  T  S  L  I  L  E  N  W  Q  F  S  L  G  V  S  G  S  F  L  L  F  K  K  V  Y  H   : Y  T  K  T  G  F  V  H  P  C  H  L  L  E  G  Q  V  L  I  S  V  D  L  C  S  L  L  L  R  S  I  C  V  Q  K  G  T  S :   S  R  L  I  K  *  S  *  L  N  F  V  E  H  Q  N  L  N  L  L  V :   F  L  P  Q  *  M  I  F  V  L  M  F  L  G  H  Q  R  R  K  R  I  P  R  Q  *  R  G  T  E  :  N  C  S  M  H  Y  L  K  K  G  G  L  K  T  V  A  I  H  P  R  M  I  I :   H  Q  L  T  R  S  V  N  A  W  M  N  M  L  I  R  N  G  N  L  L  S  S  H  Q  K  T  K  A  A  K  K  :  L  L  N  K  P  N  K  P  G  W  T  S  *  R  K  F  L  K  L  K  S  K  Q  H  K  S  P  L  S  F  N  *  T  N  F  G  *  F  Y  Q  T  V  D  T  K  *  L  G  R  N  F  L  L  V  Y  W  Y  H  S  L  P  F  L  K  K  </first_frame>
            <second_frame>  T  N  G  S  F  R  H  R  P  K  A  R  S  H  *  D  Q  T  S  G  S  Q  S  G  R  A  P  T  T  R  R  C  T  V  R  F  L  R  H  W  R   : W  G  D  L  Q  G  Y  Y  L  L  R  D  C  C  F  *  :  D  G  C  G  V  *  S  S  G  S  D  K  I  E  W  D  V  G  E  G  L  Q  Q  I  I  H  F  N  A  E  W  N  W  S  E  :  K  Q  A  *  Y  *  R  I  G  N  S  V  W  V  Y  Q  A  H  S  F  C  S  K  R  S  I  I  :  I  Q  R  P  V  S  Y  I  L  A  T  F  *  K  G  K  C  *  F  Q  S  T  C  V  H  C  C  C  V  L  S  V  C  K  K  A  Q   : A  Q  G  *  *  N  E  A  N  *  T  L  W  N  I  R  T  *  I  C  *   : C  F  Y  L  N  E  *  S  L  F  *  C  F  W  D  I  K  G  E  K  G  S  Q  D  S  E  G  E  P  R :   T  A  R  C  I  T  *  K  K  E  G  *  R  R  W  L  F  I  R  G  *  *   : F  I  S  L  Q  E  A  *  T  H  G  *  T  C  L  S  G  M  E  I  Y  C  P  L  I  K  K  P  K  R  P  K  S :   S  *  T  N  Q  T  S  P  A  G  L  H  E  E  S  S  *  N  *  S  P  S  N  I  S  L  H  C  P  S  I  R  Q  I  L  V  D  F  I  K  Q  W  T  L  N  D  W  A  E  T  S  F  W  F  I  G  T  I  V  Y  L  F  *  K  K </second_frame>
            <third_frame>   Q  M  D  L  S  D  I  A  R  K  L  G  L  T  E  T  K  H  L  V  R  K  A  A  E  L  R  R  L  A  D  V  Q  F  D  S  S  A  I  G  V  :  G  E  I  C  K  A  I  I  C  L  E  I  A  A  S  R :   M  D  V  V  F  D  R  Q  A  A  I  K  L  S  G  M  S  E  K  A  Y  N  R  S  F  T  S  M  Q  N  G  I  G  V  K :   N  K  L  D  I  R  E  L  A  I  Q  F  G  C  I  R  L  I  P  F  V  Q  K  G  L  S  L :   Y  K  D  R  F  R  T  S  L  P  P  S  R  R  A  S  A  D  F  S  R  P  V  F  T  A  A  A  F  Y  L  C  A  K  R  H  K  :  L  K  V  D  K  M  K  L  I  E  L  C  G  T  S  E  P  E  F  A  S  :  V  S  T  S  M  N  D  L  C  F  D  V  F  G  T  S  K  E  K  K  D  P  K  T  V  K  G  N  R   : E  L  L  D  A  L  P  E  K  R  R  V  E  D  G  G  Y  S  S  E  D  D  N  :  S  S  A  Y  K  K  R  K  R  M  D  E  H  A  Y  Q  E  W  K  S  T  V  L  S  S  K  N  Q  S  G  Q  K   : A  P  K  Q  T  K  Q  A  R  L  D  F  M  K  K  V  P  E  T  K  V  Q  A  T  *  V  S  I  V  L  Q  L  D  K  F  W  L  I  L  S  N  S  G  H  *  M  I  G  Q  K  L  P  F  G  L  L  V  P  *  F  T  F  F  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="142478" stop="142356"/>
                    <exon start="142262" stop="142216"/>
                    <exon start="141631" stop="141527"/>
                    <exon start="141394" stop="141314"/>
                    <exon start="141035" stop="140924"/>
                    <exon start="140819" stop="140757"/>
                    <exon start="140620" stop="140533"/>
                    <exon start="140418" stop="140351"/>
                    <exon start="139994" stop="139898"/>
                    <exon start="139795" stop="139722"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMDLSDIARKLGLTETKHLVRKAAELRRLADVQFDSSAIGVGEICKAIICLEIAASRMDVVFDRQAAIKLSGMSEKAYNRSFTSMQNGIGVKNKLDIRELAIQFGCIRLIPFVQKGLSLYKDRFRTSLPPSRRASADFSRPVFTAAAFYLCAKRHKLKVDKMKLIELCGTSEPEFASVSTSMNDLCFDVFGTSKEKKDPKTVKGNRELLDALPEKRRVEDGGYSSEDDNSSAYKKRKRMDEHAYQEWKSTVLSSKNQSGQKAPKQTKQARLDFMKKVPETKVQAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="149295" PGL_stop="143097"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="149295" e_stop="149173"/>
            <exon e_start="148217" e_stop="148020"/>
            <exon e_start="147177" e_stop="147099"/>
            <exon e_start="145773" e_stop="145631"/>
            <exon e_start="145362" e_stop="145249"/>
            <exon e_start="144342" e_stop="144211"/>
            <exon e_start="143672" e_stop="143559"/>
            <exon e_start="143460" e_stop="143097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="149295" e_stop="149173" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="0.947">
            <gDNA_intron_boundary i_start="149172" i_stop="148218" i_length="955"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="148217" e_stop="148020" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="148019" i_stop="147178" i_length="842"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="147177" e_stop="147099" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.966">
            <gDNA_intron_boundary i_start="147098" i_stop="145774" i_length="1325"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="145773" e_stop="145631" e_length="143"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.933">
            <gDNA_intron_boundary i_start="145630" i_stop="145363" i_length="268"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="145362" e_stop="145249" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="145248" i_stop="144343" i_length="906"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="144342" e_stop="144211" e_length="132"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.972">
            <gDNA_intron_boundary i_start="144210" i_stop="143673" i_length="538"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="143672" e_stop="143559" e_length="114"/>
          </exon>
          <intron i_serial="7" don_prob="0.902" acc_prob="0.992">
            <gDNA_intron_boundary i_start="143558" i_stop="143461" i_length="98"/>
          </intron>
          <exon e_serial="8" e_score="0.989">
            <gDNA_exon_boundary e_start="143460" e_stop="143097" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149295" stop="149173"/>
              <exon start="148217" stop="148020"/>
              <exon start="147177" stop="147099"/>
              <exon start="145773" stop="145631"/>
              <exon start="145362" stop="145249"/>
              <exon start="144342" stop="144220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149295" stop="149173"/>
              <exon start="148217" stop="148020"/>
              <exon start="147177" stop="147099"/>
              <exon start="145773" stop="145631"/>
              <exon start="145362" stop="145254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149295" stop="149173"/>
              <exon start="148217" stop="148020"/>
              <exon start="147177" stop="147099"/>
              <exon start="145773" stop="145631"/>
              <exon start="145362" stop="145259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149247" stop="149173"/>
              <exon start="148217" stop="148020"/>
              <exon start="147177" stop="147099"/>
              <exon start="145773" stop="145631"/>
              <exon start="145362" stop="145249"/>
              <exon start="144342" stop="144211"/>
              <exon start="143672" stop="143559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149214" stop="149173"/>
              <exon start="148217" stop="148020"/>
              <exon start="147177" stop="147099"/>
              <exon start="145773" stop="145631"/>
              <exon start="145362" stop="145249"/>
              <exon start="144342" stop="144211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149214" stop="149173"/>
              <exon start="148217" stop="148020"/>
              <exon start="147177" stop="147099"/>
              <exon start="145773" stop="145631"/>
              <exon start="145362" stop="145249"/>
              <exon start="144342" stop="144239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149214" stop="149173"/>
              <exon start="148217" stop="148020"/>
              <exon start="147177" stop="147099"/>
              <exon start="145773" stop="145631"/>
              <exon start="145362" stop="145256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="148215" stop="148020"/>
              <exon start="147177" stop="147099"/>
              <exon start="145773" stop="145631"/>
              <exon start="145362" stop="145249"/>
              <exon start="144342" stop="144211"/>
              <exon start="143672" stop="143559"/>
              <exon start="143460" stop="143352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147162" stop="147099"/>
              <exon start="145773" stop="145631"/>
              <exon start="145362" stop="145249"/>
              <exon start="144342" stop="144211"/>
              <exon start="143672" stop="143559"/>
              <exon start="143460" stop="143265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144342" stop="144211"/>
              <exon start="143672" stop="143559"/>
              <exon start="143460" stop="143099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247639" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144313" stop="144211"/>
              <exon start="143672" stop="143559"/>
              <exon start="143460" stop="143097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144303" stop="144211"/>
              <exon start="143672" stop="143559"/>
              <exon start="143460" stop="143177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309760" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGAAAAAAATAGCGGTTGATATTGTTCGTGATTATACTGGTTCTGAGGATGGCTTGGAATCTCTTGGCAAGTATTCTAACGTCGTGCTTCCTTCTCTGTCTCGCCTTCTTGGTGAAAAAAAG : GTGGTTTCTGAACCTGCGGCTCAAGCACTGGTAAATCTGTCACAAAAGCCAGAGTTGGCAGGTAAGATGGTTGAGATGCATATGGTTAGGACATCGATGGAAACCCTGTACAAGCAAGATTGTGAAATCACAAGTCTGCTGATTATGCTCCTTGTTAATCTTACTCAGCTGGATGCTGGTATTGATTCTTTGCTTCAG : TCTGCAGATGAGAAGATGCATGGTTTATATGTCATGAAACTTGTGAGATCATTTTGTTCGTCCTCCTGTGAGGGAAAAG : TTGATCCCTTTGAACATGTGGCTTCTGTACTTGTCAACATTTCTAAGAAGGAACATGGGAGAAAGCTTCTGCTTGATCAAAAACGATGCCTACTAAAGCAAATAGTCCGTAATGATTCTAAGAGCTTGTTACGAAAGAGAGGG : GTCGCAGGAACCATCCGCAACTGCTGCTTCGAAGCTGAGAATCAGCTGCAAAATTTGCTTCTGATTTCTGAATTCTTATGGCCAGCTCTGCTCCTGCCTGTTGCTGGAAATAAG : GTCTATAGTGAGGAAGACACTCGGAAAATGCCACTAGAGCTTGCAAGTGCACTCTCAATCGAACGAGAACCCGTTACTGATCCTGAAATTCGTGTACAGGCGCTAGAGGCTATTTATTTGCTCATATTACAG : GAAGCTGGCAGAAGAGCATTTTGGTCAGTGAATGGTCCCCGGATATTGCAAGTGGGCTATGCAGACGAGGATGATCCTAAAGCAATGGAAGCATATGAGCGAGCTGGCTCCTTG : CTGATTCAAGAGAGCGGCCTCGATGAAGAATTAACAGATACGTCTTCGTTAGCAGAGACATCTTCGTAGACATCCTACTTTCTTGCTGGTTTTGATTCTACAATAGCAACGAGTTCCAACAATCAATTAGACAATCTGCAGGTTGCTTAAGAGTAGTCAAGCTCTATAGAAGTGGAAGGTCCAAAGTGTACTTTGAATTATTATATTTTTTGGGTTTCTTGTCGCCGGGTTAGTTATGATCCTCTTAAAGGTTGTTATATCAAGGACTCGGGTGATGTATTCCCAGAGGTTATTGTTATTACTGGATAATTTAAGGCCCGCGATACGGGTCCAATATAATTTTACATTTTACATAAATTCACAA</gDNA_template>
            <first_frame> V  K  K  I  A  V  D  I  V  R  D  Y  T  G  S  E  D  G  L  E  S  L  G  K  Y  S  N  V  V  L  P  S  L  S  R  L  L  G  E  K  K  :  V  V  S  E  P  A  A  Q  A  L  V  N  L  S  Q  K  P  E  L  A  G  K  M  V  E  M  H  M  V  R  T  S  M  E  T  L  Y  K  Q  D  C  E  I  T  S  L  L  I  M  L  L  V  N  L  T  Q  L  D  A  G  I  D  S  L  L  Q  :  S  A  D  E  K  M  H  G  L  Y  V  M  K  L  V  R  S  F  C  S  S  S  C  E  G  K   : V  D  P  F  E  H  V  A  S  V  L  V  N  I  S  K  K  E  H  G  R  K  L  L  L  D  Q  K  R  C  L  L  K  Q  I  V  R  N  D  S  K  S  L  L  R  K  R  G  :  V  A  G  T  I  R  N  C  C  F  E  A  E  N  Q  L  Q  N  L  L  L  I  S  E  F  L  W  P  A  L  L  L  P  V  A  G  N  K  :  V  Y  S  E  E  D  T  R  K  M  P  L  E  L  A  S  A  L  S  I  E  R  E  P  V  T  D  P  E  I  R  V  Q  A  L  E  A  I  Y  L  L  I  L  Q  :  E  A  G  R  R  A  F  W  S  V  N  G  P  R  I  L  Q  V  G  Y  A  D  E  D  D  P  K  A  M  E  A  Y  E  R  A  G  S  L  :  L  I  Q  E  S  G  L  D  E  E  L  T  D  T  S  S  L  A  E  T  S  S  *  T  S  Y  F  L  A  G  F  D  S  T  I  A  T  S  S  N  N  Q  L  D  N  L  Q  V  A  *  E  *  S  S  S  I  E  V  E  G  P  K  C  T  L  N  Y  Y  I  F  W  V  S  C  R  R  V  S  Y  D  P  L  K  G  C  Y  I  K  D  S  G  D  V  F  P  E  V  I  V  I  T  G  *  F  K  A  R  D  T  G  P  I  *  F  Y  I  L  H  K  F  T  </first_frame>
            <second_frame>  *  K  K  *  R  L  I  L  F  V  I  I  L  V  L  R  M  A  W  N  L  L  A  S  I  L  T  S  C  F  L  L  C  L  A  F  L  V  K  K  R :   W  F  L  N  L  R  L  K  H  W  *  I  C  H  K  S  Q  S  W  Q  V  R  W  L  R  C  I  W  L  G  H  R  W  K  P  C  T  S  K  I  V  K  S  Q  V  C  *  L  C  S  L  L  I  L  L  S  W  M  L  V  L  I  L  C  F  S :   L  Q  M  R  R  C  M  V  Y  M  S  *  N  L  *  D  H  F  V  R  P  P  V  R  E  K  :  L  I  P  L  N  M  W  L  L  Y  L  S  T  F  L  R  R  N  M  G  E  S  F  C  L  I  K  N  D  A  Y  *  S  K  *  S  V  M  I  L  R  A  C  Y  E  R  E  G :   S  Q  E  P  S  A  T  A  A  S  K  L  R  I  S  C  K  I  C  F  *  F  L  N  S  Y  G  Q  L  C  S  C  L  L  L  E  I  R :   S  I  V  R  K  T  L  G  K  C  H  *  S  L  Q  V  H  S  Q  S  N  E  N  P  L  L  I  L  K  F  V  Y  R  R  *  R  L  F  I  C  S  Y  Y  R :   K  L  A  E  E  H  F  G  Q  *  M  V  P  G  Y  C  K  W  A  M  Q  T  R  M  I  L  K  Q  W  K  H  M  S  E  L  A  P  C :   *  F  K  R  A  A  S  M  K  N  *  Q  I  R  L  R  *  Q  R  H  L  R  R  H  P  T  F  L  L  V  L  I  L  Q  *  Q  R  V  P  T  I  N  *  T  I  C  R  L  L  K  S  S  Q  A  L  *  K  W  K  V  Q  S  V  L  *  I  I  I  F  F  G  F  L  V  A  G  L  V  M  I  L  L  K  V  V  I  S  R  T  R  V  M  Y  S  Q  R  L  L  L  L  L  D  N  L  R  P  A  I  R  V  Q  Y  N  F  T  F  Y  I  N  S  Q </second_frame>
            <third_frame>   E  K  N  S  G  *  Y  C  S  *  L  Y  W  F  *  G  W  L  G  I  S  W  Q  V  F  *  R  R  A  S  F  S  V  S  P  S  W  *  K  K   : G  G  F  *  T  C  G  S  S  T  G  K  S  V  T  K  A  R  V  G  R  *  D  G  *  D  A  Y  G  *  D  I  D  G  N  P  V  Q  A  R  L  *  N  H  K  S  A  D  Y  A  P  C  *  S  Y  S  A  G  C  W  Y  *  F  F  A  S   : V  C  R  *  E  D  A  W  F  I  C  H  E  T  C  E  I  I  L  F  V  L  L  *  G  K  S :   *  S  L  *  T  C  G  F  C  T  C  Q  H  F  *  E  G  T  W  E  K  A  S  A  *  S  K  T  M  P  T  K  A  N  S  P  *  *  F  *  E  L  V  T  K  E  R   : G  R  R  N  H  P  Q  L  L  L  R  S  *  E  S  A  A  K  F  A  S  D  F  *  I  L  M  A  S  S  A  P  A  C  C  W  K  *   : G  L  *  *  G  R  H  S  E  N  A  T  R  A  C  K  C  T  L  N  R  T  R  T  R  Y  *  S  *  N  S  C  T  G  A  R  G  Y  L  F  A  H  I  T   : G  S  W  Q  K  S  I  L  V  S  E  W  S  P  D  I  A  S  G  L  C  R  R  G  *  S  *  S  N  G  S  I  *  A  S  W  L  L   : A  D  S  R  E  R  P  R  *  R  I  N  R  Y  V  F  V  S  R  D  I  F  V  D  I  L  L  S  C  W  F  *  F  Y  N  S  N  E  F  Q  Q  S  I  R  Q  S  A  G  C  L  R  V  V  K  L  Y  R  S  G  R  S  K  V  Y  F  E  L  L  Y  F  L  G  F  L  S  P  G  *  L  *  S  S  *  R  L  L  Y  Q  G  L  G  *  C  I  P  R  G  Y  C  Y  Y  W  I  I  *  G  P  R  Y  G  S  N  I  I  L  H  F  T  *  I  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0145P19.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="149295" stop="149173"/>
                    <exon start="148217" stop="148020"/>
                    <exon start="147177" stop="147099"/>
                    <exon start="145773" stop="145631"/>
                    <exon start="145362" stop="145249"/>
                    <exon start="144342" stop="144211"/>
                    <exon start="143672" stop="143559"/>
                    <exon start="143460" stop="143392"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>969</number_coding_nucleotides>
                  <number_encoded_amino_acids>323</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKKIAVDIVRDYTGSEDGLESLGKYSNVVLPSLSRLLGEKKVVSEPAAQALVNLSQKPELAGKMVEMHMVRTSMETLYKQDCEITSLLIMLLVNLTQLDAGIDSLLQSADEKMHGLYVMKLVRSFCSSSCEGKVDPFEHVASVLVNISKKEHGRKLLLDQKRCLLKQIVRNDSKSLLRKRGVAGTIRNCCFEAENQLQNLLLISEFLWPALLLPVAGNKVYSEEDTRKMPLELASALSIEREPVTDPEIRVQALEAIYLLILQEAGRRAFWSVNGPRILQVGYADEDDPKAMEAYERAGSLLIQESGLDEELTDTSSLAETSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 329 chains have been computed
$ 
$ memory statistics:
$ 1718848 bytes spliced alignments in total
$ 188 spliced alignments have been stored
$ 9142 bytes was the average size of a spliced alignment
$ 38848 bytes predicted gene locations in total
$ 24 predicted gene locations have been stored
$ 1618 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 370 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:49:39
-->
