<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:22:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235582" ref_strand="+" ref_description="SGN-E235582 [cLED-11-L22]">
      <seq>ccatgctggccagtccgatactcttcctcctcctcttcctgctgctgctgcatcgtctgggcaaaactacccagttggtagcccatcgtctaccgcagcacagacgaaacctcggatgcgatggacacccgagcttcacgaagtctttgtagaagctatcagtaagcttggtgggagcgaaaaagctacaccaaagggagtcttgaagctcatgaatgttgaaggcctaaccatctatcatgtcaaaagccacttacagaaatatagaactgccagatacaaaccagaatcctcggaaggaacaccggaaaagaagaccaccagtgtgacagagatgccatctttggacctgataacgaccatggggataacagaagcactaagaatgcagatggaagtccaaaagcagcttcacgaacaacttgagatccagagaaagttgcagttgcggatcgaagaacaaggtaaataccttgaaatgatgtttgagaagacaaaggacataggaaaagatctaaaggtatcatcatcatcaagaacagatgaacatccttcaccatccaataagatgaagcatacatctcccaacgactaatcagaagcactcgagaaagatcgtttgtggaactcaccagacaaaaaagctcatgaagatcatgactcagatgatagagacttgtgttgttcacctacatcgaaacgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="310" stop="3284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="610" g_stop="791" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="792" i_stop="899" i_length="108">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="900" g_stop="976" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="259" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="977" i_stop="1052" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1053" g_stop="1092" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="299" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1093" i_stop="1355" i_length="263">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1356" g_stop="1413" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="357" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1414" i_stop="1864" i_length="451">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1865" g_stop="1934" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="427" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1935" i_stop="2707" i_length="773">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2708" g_stop="2984" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="704" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E235582" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="610" e_stop="791"/>
          <exon e_start="900" e_stop="976"/>
          <exon e_start="1053" e_stop="1092"/>
          <exon e_start="1356" e_stop="1413"/>
          <exon e_start="1865" e_stop="1934"/>
          <exon e_start="2708" e_stop="2984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGCTGGCCAGTCCGATACTCTTCCTCCTCCTCTTCCTGCTGCTGCTGCATCGTCTGGGCAAAACTACCCAGTTGGTAGCCCATCGTCTACCGCAGCACAGACGAAACCTCGGATGCGATGGACACCCGAGCTTCACGAAGTCTTTGTAGAAGCTATCAGTAAGCTTGGTGGGAGCGAAAGTGCGTGACCTCTTTGTTTCTATGTTCTATTTCTCTTTTTAGCAGTTTGGATGAGTAAGAGTTAACGTTTAACATTATTATATTGGATTCACACATTTGACTTTACAGAAGCTACACCAAAGGGAGTCTTGAAGCTCATGAATGTTGAAGGCCTAACCATCTATCATGTCAAAAGCCACTTACAGGTATAATAAATCCTTCCCATTAACCTTTTCCGAGGTGACAATTTATTTACCTTATACATTTCATTTTGAATTTCAGAAATATAGAACTGCCAGATACAAACCAGAATCCTCGGAAGGTAGAAATTTCCTCTTTGATTAGCTGATAACTTTTGCATCCGTCAAGGACTCAGTATACATTTTGCTAAAACGAAAACATATGTGTTACATCTCCTCATACTTGTACTTCCTGCCTCTCTAGTTTCTTGTGCATGTGTCAAAGTGATCCCCAACTGTGAATAAAACTAGGGATCTTAAGTTAAATTTATTGATGGTCTGTTGGACTTCCCCACAGTTTTTGAGATGAGAAGATTGAAATTCACAGACTGTAATCTCATTGCAGGAACACCGGAAAAGAAGACCACCAGTGTGACAGAGATGCCATCTTTGGACCTGATAACGTAAGTCTTTGCTATAACACTATGCATATCTATTGATTATGCAGCTGTCACACTTCTTGGATATCTGTTCGCTATGGGGAATAAGCGTTAAACACAATATGATATGAGCAAAGTTTATTTGATTGTAAGAATGTGTAATTTTACAACTGCAGATATCACCCCCTCCCTGTCGTTTTATTTTAATTTAATTGACTTGCCAATAAATTAAAACTCAGTCCAAAGAACAAATGAAGATCATCGTTTACAAACTCGAAAACATGCAAGGTTTGTCCATGTCCCTCTGTTTGGGAGCATCTGATAGAAGGACCAAAAAGTGTAGCATAGGGAATTCTTGTGATAGCAGCTAAATTCTAATCTAATTCTGGTTGCAATTTCCGTTTCCTGGATGATATAGTTGAAGTCTTTTTTGTGGTGATTGATTGTTAAAACTATATTTGGATTTTGGTAATAGGACCATGGGGATAACAGAAGCACTAAGAATGCAGATGGAAGTCCAAAAGCAGCTTCACGAACAACTTGAGGTGCGCGTAAACGCTCAAAATCTCCACCATTACTCATGTATCTATTCTTGCTTTTCTTTCTCCTGTTTTCATTGTCAAATCAGAAGTCAAAAATCTCTGGATAATTGAGAATGTAATCTCAAAAATCCTGTGCGTTGTGCGTCTGTAAAGACACATATCCAAGTTTGTCACTATTTTAGCAACATCTCAATGTATAGTGTGAAATTATAATAGGGAGAGCACACCACATTAAACAACTTGCAACTCCACCAAATTGCAGATGACATGGTCACTCACTCCATTCAGTACCTTTTTCCGTTTTAGTTGATCCATCATCCATGGCATAAGTATCTGACAAAATATCTGTAGTGCTTATGTAGCGGGTAGTTAGAAGCTTTTCTGGGTAAAACTACTTGAATACAGAGACCCGAAGTTATTATCAGTAATTTCATGAAATGTCAAGTTTTAGGGAGTTACTGAAACAACATCAATTACCGCAGAACTGAAAAGAATTGATTTCCTCTCAACTTGGAGCCTGTGTTGCTCGAACTCTTCAAAAATGCCGAGGGGTGCATGTCGGATCTTCCAAAAGTAGTACATTTTTAGAGGATCCGACAGGGGTGAGGTTTTGGAAATTCCGAGCAACATAACTTGGAGCTGATTCCTTTATCATCTTTTCTCCATTTCCTGTTTCCTATTTGTGAGAGTTTTTGATTTCCTCTAATACTTTCTATGGTTATAAAAGAATAAAAATCTATCAAGTATAATTATAGTTTGAATATCCATTTCCTCAGATCCAGAGAAAGTTGCAGTTGCGGATCGAAGAACAAGGTAAATACCTTGAAATGATGTTTGAGAAGACAAAGGACATAGGAAAAGATCTAAAGGTATCATCATCATCAAGAACAGATGAACATCCTTCACCATCCAATAAGATGAAGCATACATCTCCCAACGACTAATCAGAAGCACTCGAGAAAGATCGTTTGTGGAACTCACCAGACAAAAAAGCTCATGAAGATCATGACTCAGATGATAGAGACTTGTGTTGTTCACCTACATCGAAACGAG</genome_strand>
        <mrna_strand>CCATGCTGGCCAGTCCGATACTCTTCCTCCTCCTCTTCCTGCTGCTGCTGCATCGTCTGGGCAAAACTACCCAGTTGGTAGCCCATCGTCTACCGCAGCACAGACGAAACCTCGGATGCGATGGACACCCGAGCTTCACGAAGTCTTTGTAGAAGCTATCAGTAAGCTTGGTGGGAGCGAAA............................................................................................................AAGCTACACCAAAGGGAGTCTTGAAGCTCATGAATGTTGAAGGCCTAACCATCTATCATGTCAAAAGCCACTTACAG............................................................................AAATATAGAACTGCCAGATACAAACCAGAATCCTCGGAAG.......................................................................................................................................................................................................................................................................GAACACCGGAAAAGAAGACCACCAGTGTGACAGAGATGCCATCTTTGGACCTGATAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCATGGGGATAACAGAAGCACTAAGAATGCAGATGGAAGTCCAAAAGCAGCTTCACGAACAACTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGAGAAAGTTGCAGTTGCGGATCGAAGAACAAGGTAAATACCTTGAAATGATGTTTGAGAAGACAAAGGACATAGGAAAAGATCTAAAGGTATCATCATCATCAAGAACAGATGAACATCCTTCACCATCCAATAAGATGAAGCATACATCTCCCAACGACTAATCAGAAGCACTCGAGAAAGATCGTTTGTGGAACTCACCAGACAAAAAAGCTCATGAAGATCATGACTCAGATGATAGAGACTTGTGTTGTTCACCTACATCGAAACGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238379" ref_strand="+" ref_description="SGN-E238379 [cLED-17-O24]">
      <seq>ccatgctggccagtccgatactcttcctcctcctcttcctgctgctgctgcatcgtctgggcaaaactacccagttggtagcccatcgtctaccgcagcacagacgaaacctcggatgcgatggacacccgagcttcacgaagtctttgtagaagctatcagtaagcttggtgggagcgaaaaagctacaccaaagggagtcttgaagctcatgaatgttgaaggcctaaccatctatcatgtcaaaagccacttacagaaatatagaactgccagatacaaaccagaatcctcggaaggaacaccggaaaagaagaccaccagtgtgacagagatgccatctttggacctgataacgaccatggggataacagaagcactaagaatgcagatggaagtccaaaagcagcttcacgaacaacttgagatccagagaaagttgcagttgcggatcgaagaacaaggtaaataccttgaaatgatgtttgagaagacaaaggacataggaaaagatctaaaggtatcatcatcatcaagaacagatgaacatccttcaccatccaataagatgaagcatacatctcccaacgactaatcagaagcactcgagaaagatcgtttgtggaactcaccagacaaaaaagctcatgaagatcatgactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="310" stop="3243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="610" g_stop="791" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="792" i_stop="899" i_length="108">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="900" g_stop="976" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="259" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="977" i_stop="1052" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1053" g_stop="1092" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="299" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1093" i_stop="1355" i_length="263">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1356" g_stop="1413" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="357" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1414" i_stop="1864" i_length="451">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1865" g_stop="1934" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="427" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1935" i_stop="2707" i_length="773">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2708" g_stop="2943" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="663" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E238379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="610" e_stop="791"/>
          <exon e_start="900" e_stop="976"/>
          <exon e_start="1053" e_stop="1092"/>
          <exon e_start="1356" e_stop="1413"/>
          <exon e_start="1865" e_stop="1934"/>
          <exon e_start="2708" e_stop="2943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGCTGGCCAGTCCGATACTCTTCCTCCTCCTCTTCCTGCTGCTGCTGCATCGTCTGGGCAAAACTACCCAGTTGGTAGCCCATCGTCTACCGCAGCACAGACGAAACCTCGGATGCGATGGACACCCGAGCTTCACGAAGTCTTTGTAGAAGCTATCAGTAAGCTTGGTGGGAGCGAAAGTGCGTGACCTCTTTGTTTCTATGTTCTATTTCTCTTTTTAGCAGTTTGGATGAGTAAGAGTTAACGTTTAACATTATTATATTGGATTCACACATTTGACTTTACAGAAGCTACACCAAAGGGAGTCTTGAAGCTCATGAATGTTGAAGGCCTAACCATCTATCATGTCAAAAGCCACTTACAGGTATAATAAATCCTTCCCATTAACCTTTTCCGAGGTGACAATTTATTTACCTTATACATTTCATTTTGAATTTCAGAAATATAGAACTGCCAGATACAAACCAGAATCCTCGGAAGGTAGAAATTTCCTCTTTGATTAGCTGATAACTTTTGCATCCGTCAAGGACTCAGTATACATTTTGCTAAAACGAAAACATATGTGTTACATCTCCTCATACTTGTACTTCCTGCCTCTCTAGTTTCTTGTGCATGTGTCAAAGTGATCCCCAACTGTGAATAAAACTAGGGATCTTAAGTTAAATTTATTGATGGTCTGTTGGACTTCCCCACAGTTTTTGAGATGAGAAGATTGAAATTCACAGACTGTAATCTCATTGCAGGAACACCGGAAAAGAAGACCACCAGTGTGACAGAGATGCCATCTTTGGACCTGATAACGTAAGTCTTTGCTATAACACTATGCATATCTATTGATTATGCAGCTGTCACACTTCTTGGATATCTGTTCGCTATGGGGAATAAGCGTTAAACACAATATGATATGAGCAAAGTTTATTTGATTGTAAGAATGTGTAATTTTACAACTGCAGATATCACCCCCTCCCTGTCGTTTTATTTTAATTTAATTGACTTGCCAATAAATTAAAACTCAGTCCAAAGAACAAATGAAGATCATCGTTTACAAACTCGAAAACATGCAAGGTTTGTCCATGTCCCTCTGTTTGGGAGCATCTGATAGAAGGACCAAAAAGTGTAGCATAGGGAATTCTTGTGATAGCAGCTAAATTCTAATCTAATTCTGGTTGCAATTTCCGTTTCCTGGATGATATAGTTGAAGTCTTTTTTGTGGTGATTGATTGTTAAAACTATATTTGGATTTTGGTAATAGGACCATGGGGATAACAGAAGCACTAAGAATGCAGATGGAAGTCCAAAAGCAGCTTCACGAACAACTTGAGGTGCGCGTAAACGCTCAAAATCTCCACCATTACTCATGTATCTATTCTTGCTTTTCTTTCTCCTGTTTTCATTGTCAAATCAGAAGTCAAAAATCTCTGGATAATTGAGAATGTAATCTCAAAAATCCTGTGCGTTGTGCGTCTGTAAAGACACATATCCAAGTTTGTCACTATTTTAGCAACATCTCAATGTATAGTGTGAAATTATAATAGGGAGAGCACACCACATTAAACAACTTGCAACTCCACCAAATTGCAGATGACATGGTCACTCACTCCATTCAGTACCTTTTTCCGTTTTAGTTGATCCATCATCCATGGCATAAGTATCTGACAAAATATCTGTAGTGCTTATGTAGCGGGTAGTTAGAAGCTTTTCTGGGTAAAACTACTTGAATACAGAGACCCGAAGTTATTATCAGTAATTTCATGAAATGTCAAGTTTTAGGGAGTTACTGAAACAACATCAATTACCGCAGAACTGAAAAGAATTGATTTCCTCTCAACTTGGAGCCTGTGTTGCTCGAACTCTTCAAAAATGCCGAGGGGTGCATGTCGGATCTTCCAAAAGTAGTACATTTTTAGAGGATCCGACAGGGGTGAGGTTTTGGAAATTCCGAGCAACATAACTTGGAGCTGATTCCTTTATCATCTTTTCTCCATTTCCTGTTTCCTATTTGTGAGAGTTTTTGATTTCCTCTAATACTTTCTATGGTTATAAAAGAATAAAAATCTATCAAGTATAATTATAGTTTGAATATCCATTTCCTCAGATCCAGAGAAAGTTGCAGTTGCGGATCGAAGAACAAGGTAAATACCTTGAAATGATGTTTGAGAAGACAAAGGACATAGGAAAAGATCTAAAGGTATCATCATCATCAAGAACAGATGAACATCCTTCACCATCCAATAAGATGAAGCATACATCTCCCAACGACTAATCAGAAGCACTCGAGAAAGATCGTTTGTGGAACTCACCAGACAAAAAAGCTCATGAAGATCATGACTC</genome_strand>
        <mrna_strand>CCATGCTGGCCAGTCCGATACTCTTCCTCCTCCTCTTCCTGCTGCTGCTGCATCGTCTGGGCAAAACTACCCAGTTGGTAGCCCATCGTCTACCGCAGCACAGACGAAACCTCGGATGCGATGGACACCCGAGCTTCACGAAGTCTTTGTAGAAGCTATCAGTAAGCTTGGTGGGAGCGAAA............................................................................................................AAGCTACACCAAAGGGAGTCTTGAAGCTCATGAATGTTGAAGGCCTAACCATCTATCATGTCAAAAGCCACTTACAG............................................................................AAATATAGAACTGCCAGATACAAACCAGAATCCTCGGAAG.......................................................................................................................................................................................................................................................................GAACACCGGAAAAGAAGACCACCAGTGTGACAGAGATGCCATCTTTGGACCTGATAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCATGGGGATAACAGAAGCACTAAGAATGCAGATGGAAGTCCAAAAGCAGCTTCACGAACAACTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGAGAAAGTTGCAGTTGCGGATCGAAGAACAAGGTAAATACCTTGAAATGATGTTTGAGAAGACAAAGGACATAGGAAAAGATCTAAAGGTATCATCATCATCAAGAACAGATGAACATCCTTCACCATCCAATAAGATGAAGCATACATCTCCCAACGACTAATCAGAAGCACTCGAGAAAGATCGTTTGTGGAACTCACCAGACAAAAAAGCTCATGAAGATCATGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233563" ref_strand="+" ref_description="SGN-E233563 [cLED-9-H11]">
      <seq>ccatgctggccagtccgatactcttcctcctcctcttcctgctgctgctgcatcgtctgggcaaaactacccagttggtagcccatcgtctaccgcagcacagacgaaacctcggatgcgatggacacccgagcttcacgaagtctttgtagaagctatcagtaagcttggtgggagcgaaaaagctacaccaaagggagtcttgaagctcatgaatgttgaaggcctaaccatctatcatgtcaaaagccacttacagaaatatagaactgccagatacaaaccagaatcctcggaaggaacaccggaaaagaagaccaccagtgtgacagagatgccatctttggacctgataacgaccatggggataacagaagcactaagaatgcagatggaagtccaaaagcagcttcacgaacaacttgagatccagagaaagttgcagttgcggatcgaagaacaaggtaaataccttgaaatgatgtttgagaagacaaaggacataggaaaagatctaaaggtatcatcatcatcaagaacagatgaacatccttcaccatccaataagatgaagcatacatctcccaacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="310" stop="3172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="610" g_stop="791" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="792" i_stop="899" i_length="108">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="900" g_stop="976" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="259" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="977" i_stop="1052" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1053" g_stop="1092" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="299" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1093" i_stop="1355" i_length="263">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1356" g_stop="1413" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="357" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1414" i_stop="1864" i_length="451">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1865" g_stop="1934" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="427" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1935" i_stop="2707" i_length="773">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2708" g_stop="2872" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="592" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E233563" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="610" e_stop="791"/>
          <exon e_start="900" e_stop="976"/>
          <exon e_start="1053" e_stop="1092"/>
          <exon e_start="1356" e_stop="1413"/>
          <exon e_start="1865" e_stop="1934"/>
          <exon e_start="2708" e_stop="2872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGCTGGCCAGTCCGATACTCTTCCTCCTCCTCTTCCTGCTGCTGCTGCATCGTCTGGGCAAAACTACCCAGTTGGTAGCCCATCGTCTACCGCAGCACAGACGAAACCTCGGATGCGATGGACACCCGAGCTTCACGAAGTCTTTGTAGAAGCTATCAGTAAGCTTGGTGGGAGCGAAAGTGCGTGACCTCTTTGTTTCTATGTTCTATTTCTCTTTTTAGCAGTTTGGATGAGTAAGAGTTAACGTTTAACATTATTATATTGGATTCACACATTTGACTTTACAGAAGCTACACCAAAGGGAGTCTTGAAGCTCATGAATGTTGAAGGCCTAACCATCTATCATGTCAAAAGCCACTTACAGGTATAATAAATCCTTCCCATTAACCTTTTCCGAGGTGACAATTTATTTACCTTATACATTTCATTTTGAATTTCAGAAATATAGAACTGCCAGATACAAACCAGAATCCTCGGAAGGTAGAAATTTCCTCTTTGATTAGCTGATAACTTTTGCATCCGTCAAGGACTCAGTATACATTTTGCTAAAACGAAAACATATGTGTTACATCTCCTCATACTTGTACTTCCTGCCTCTCTAGTTTCTTGTGCATGTGTCAAAGTGATCCCCAACTGTGAATAAAACTAGGGATCTTAAGTTAAATTTATTGATGGTCTGTTGGACTTCCCCACAGTTTTTGAGATGAGAAGATTGAAATTCACAGACTGTAATCTCATTGCAGGAACACCGGAAAAGAAGACCACCAGTGTGACAGAGATGCCATCTTTGGACCTGATAACGTAAGTCTTTGCTATAACACTATGCATATCTATTGATTATGCAGCTGTCACACTTCTTGGATATCTGTTCGCTATGGGGAATAAGCGTTAAACACAATATGATATGAGCAAAGTTTATTTGATTGTAAGAATGTGTAATTTTACAACTGCAGATATCACCCCCTCCCTGTCGTTTTATTTTAATTTAATTGACTTGCCAATAAATTAAAACTCAGTCCAAAGAACAAATGAAGATCATCGTTTACAAACTCGAAAACATGCAAGGTTTGTCCATGTCCCTCTGTTTGGGAGCATCTGATAGAAGGACCAAAAAGTGTAGCATAGGGAATTCTTGTGATAGCAGCTAAATTCTAATCTAATTCTGGTTGCAATTTCCGTTTCCTGGATGATATAGTTGAAGTCTTTTTTGTGGTGATTGATTGTTAAAACTATATTTGGATTTTGGTAATAGGACCATGGGGATAACAGAAGCACTAAGAATGCAGATGGAAGTCCAAAAGCAGCTTCACGAACAACTTGAGGTGCGCGTAAACGCTCAAAATCTCCACCATTACTCATGTATCTATTCTTGCTTTTCTTTCTCCTGTTTTCATTGTCAAATCAGAAGTCAAAAATCTCTGGATAATTGAGAATGTAATCTCAAAAATCCTGTGCGTTGTGCGTCTGTAAAGACACATATCCAAGTTTGTCACTATTTTAGCAACATCTCAATGTATAGTGTGAAATTATAATAGGGAGAGCACACCACATTAAACAACTTGCAACTCCACCAAATTGCAGATGACATGGTCACTCACTCCATTCAGTACCTTTTTCCGTTTTAGTTGATCCATCATCCATGGCATAAGTATCTGACAAAATATCTGTAGTGCTTATGTAGCGGGTAGTTAGAAGCTTTTCTGGGTAAAACTACTTGAATACAGAGACCCGAAGTTATTATCAGTAATTTCATGAAATGTCAAGTTTTAGGGAGTTACTGAAACAACATCAATTACCGCAGAACTGAAAAGAATTGATTTCCTCTCAACTTGGAGCCTGTGTTGCTCGAACTCTTCAAAAATGCCGAGGGGTGCATGTCGGATCTTCCAAAAGTAGTACATTTTTAGAGGATCCGACAGGGGTGAGGTTTTGGAAATTCCGAGCAACATAACTTGGAGCTGATTCCTTTATCATCTTTTCTCCATTTCCTGTTTCCTATTTGTGAGAGTTTTTGATTTCCTCTAATACTTTCTATGGTTATAAAAGAATAAAAATCTATCAAGTATAATTATAGTTTGAATATCCATTTCCTCAGATCCAGAGAAAGTTGCAGTTGCGGATCGAAGAACAAGGTAAATACCTTGAAATGATGTTTGAGAAGACAAAGGACATAGGAAAAGATCTAAAGGTATCATCATCATCAAGAACAGATGAACATCCTTCACCATCCAATAAGATGAAGCATACATCTCCCAACGAC</genome_strand>
        <mrna_strand>CCATGCTGGCCAGTCCGATACTCTTCCTCCTCCTCTTCCTGCTGCTGCTGCATCGTCTGGGCAAAACTACCCAGTTGGTAGCCCATCGTCTACCGCAGCACAGACGAAACCTCGGATGCGATGGACACCCGAGCTTCACGAAGTCTTTGTAGAAGCTATCAGTAAGCTTGGTGGGAGCGAAA............................................................................................................AAGCTACACCAAAGGGAGTCTTGAAGCTCATGAATGTTGAAGGCCTAACCATCTATCATGTCAAAAGCCACTTACAG............................................................................AAATATAGAACTGCCAGATACAAACCAGAATCCTCGGAAG.......................................................................................................................................................................................................................................................................GAACACCGGAAAAGAAGACCACCAGTGTGACAGAGATGCCATCTTTGGACCTGATAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCATGGGGATAACAGAAGCACTAAGAATGCAGATGGAAGTCCAAAAGCAGCTTCACGAACAACTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGAGAAAGTTGCAGTTGCGGATCGAAGAACAAGGTAAATACCTTGAAATGATGTTTGAGAAGACAAAGGACATAGGAAAAGATCTAAAGGTATCATCATCATCAAGAACAGATGAACATCCTTCACCATCCAATAAGATGAAGCATACATCTCCCAACGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235321" ref_strand="+" ref_description="SGN-E235321 [cLED-11-K8]">
      <seq>ccatgctggccagtccgatactcttcctcctcctcttcctgctgctgctgcatcgtctgggcaaaactacccagttggtagcccatcgtctaccgcagcacagacgaaacctcggatgcgatggacacccgagcttcacgaagtctttgtagaagctatcagtaagcttggtgggagcgaaaaagctacaccaaagggagtcttgaagctcatgaatgttgaaggcctaaccatctatcatgtcaaaagccacttacagaaatatagaactgccagatacaaaccagaatcctcggaaggaacaccggaaaagaagaccaccagtgtgacagagatgccatctttggacctgataacgaccatggggataacagaagcactaagaatgcagatggaagtccaaaagcagcttcacgaacaacttgagatccagagaaagttgcagttgcggatcgaagaacaaggtaaataccttgaaatgatgtttgagaagacaaaggacataggaaaagatctaaaggtatcatcatcatcaagaacagatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="310" stop="3129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="610" g_stop="791" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="792" i_stop="899" i_length="108">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="900" g_stop="976" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="259" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="977" i_stop="1052" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1053" g_stop="1092" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="299" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1093" i_stop="1355" i_length="263">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1356" g_stop="1413" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="357" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1414" i_stop="1864" i_length="451">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1865" g_stop="1934" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="427" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1935" i_stop="2707" i_length="773">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2708" g_stop="2829" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="549" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E235321" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="610" e_stop="791"/>
          <exon e_start="900" e_stop="976"/>
          <exon e_start="1053" e_stop="1092"/>
          <exon e_start="1356" e_stop="1413"/>
          <exon e_start="1865" e_stop="1934"/>
          <exon e_start="2708" e_stop="2829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGCTGGCCAGTCCGATACTCTTCCTCCTCCTCTTCCTGCTGCTGCTGCATCGTCTGGGCAAAACTACCCAGTTGGTAGCCCATCGTCTACCGCAGCACAGACGAAACCTCGGATGCGATGGACACCCGAGCTTCACGAAGTCTTTGTAGAAGCTATCAGTAAGCTTGGTGGGAGCGAAAGTGCGTGACCTCTTTGTTTCTATGTTCTATTTCTCTTTTTAGCAGTTTGGATGAGTAAGAGTTAACGTTTAACATTATTATATTGGATTCACACATTTGACTTTACAGAAGCTACACCAAAGGGAGTCTTGAAGCTCATGAATGTTGAAGGCCTAACCATCTATCATGTCAAAAGCCACTTACAGGTATAATAAATCCTTCCCATTAACCTTTTCCGAGGTGACAATTTATTTACCTTATACATTTCATTTTGAATTTCAGAAATATAGAACTGCCAGATACAAACCAGAATCCTCGGAAGGTAGAAATTTCCTCTTTGATTAGCTGATAACTTTTGCATCCGTCAAGGACTCAGTATACATTTTGCTAAAACGAAAACATATGTGTTACATCTCCTCATACTTGTACTTCCTGCCTCTCTAGTTTCTTGTGCATGTGTCAAAGTGATCCCCAACTGTGAATAAAACTAGGGATCTTAAGTTAAATTTATTGATGGTCTGTTGGACTTCCCCACAGTTTTTGAGATGAGAAGATTGAAATTCACAGACTGTAATCTCATTGCAGGAACACCGGAAAAGAAGACCACCAGTGTGACAGAGATGCCATCTTTGGACCTGATAACGTAAGTCTTTGCTATAACACTATGCATATCTATTGATTATGCAGCTGTCACACTTCTTGGATATCTGTTCGCTATGGGGAATAAGCGTTAAACACAATATGATATGAGCAAAGTTTATTTGATTGTAAGAATGTGTAATTTTACAACTGCAGATATCACCCCCTCCCTGTCGTTTTATTTTAATTTAATTGACTTGCCAATAAATTAAAACTCAGTCCAAAGAACAAATGAAGATCATCGTTTACAAACTCGAAAACATGCAAGGTTTGTCCATGTCCCTCTGTTTGGGAGCATCTGATAGAAGGACCAAAAAGTGTAGCATAGGGAATTCTTGTGATAGCAGCTAAATTCTAATCTAATTCTGGTTGCAATTTCCGTTTCCTGGATGATATAGTTGAAGTCTTTTTTGTGGTGATTGATTGTTAAAACTATATTTGGATTTTGGTAATAGGACCATGGGGATAACAGAAGCACTAAGAATGCAGATGGAAGTCCAAAAGCAGCTTCACGAACAACTTGAGGTGCGCGTAAACGCTCAAAATCTCCACCATTACTCATGTATCTATTCTTGCTTTTCTTTCTCCTGTTTTCATTGTCAAATCAGAAGTCAAAAATCTCTGGATAATTGAGAATGTAATCTCAAAAATCCTGTGCGTTGTGCGTCTGTAAAGACACATATCCAAGTTTGTCACTATTTTAGCAACATCTCAATGTATAGTGTGAAATTATAATAGGGAGAGCACACCACATTAAACAACTTGCAACTCCACCAAATTGCAGATGACATGGTCACTCACTCCATTCAGTACCTTTTTCCGTTTTAGTTGATCCATCATCCATGGCATAAGTATCTGACAAAATATCTGTAGTGCTTATGTAGCGGGTAGTTAGAAGCTTTTCTGGGTAAAACTACTTGAATACAGAGACCCGAAGTTATTATCAGTAATTTCATGAAATGTCAAGTTTTAGGGAGTTACTGAAACAACATCAATTACCGCAGAACTGAAAAGAATTGATTTCCTCTCAACTTGGAGCCTGTGTTGCTCGAACTCTTCAAAAATGCCGAGGGGTGCATGTCGGATCTTCCAAAAGTAGTACATTTTTAGAGGATCCGACAGGGGTGAGGTTTTGGAAATTCCGAGCAACATAACTTGGAGCTGATTCCTTTATCATCTTTTCTCCATTTCCTGTTTCCTATTTGTGAGAGTTTTTGATTTCCTCTAATACTTTCTATGGTTATAAAAGAATAAAAATCTATCAAGTATAATTATAGTTTGAATATCCATTTCCTCAGATCCAGAGAAAGTTGCAGTTGCGGATCGAAGAACAAGGTAAATACCTTGAAATGATGTTTGAGAAGACAAAGGACATAGGAAAAGATCTAAAGGTATCATCATCATCAAGAACAGATGAACA</genome_strand>
        <mrna_strand>CCATGCTGGCCAGTCCGATACTCTTCCTCCTCCTCTTCCTGCTGCTGCTGCATCGTCTGGGCAAAACTACCCAGTTGGTAGCCCATCGTCTACCGCAGCACAGACGAAACCTCGGATGCGATGGACACCCGAGCTTCACGAAGTCTTTGTAGAAGCTATCAGTAAGCTTGGTGGGAGCGAAA............................................................................................................AAGCTACACCAAAGGGAGTCTTGAAGCTCATGAATGTTGAAGGCCTAACCATCTATCATGTCAAAAGCCACTTACAG............................................................................AAATATAGAACTGCCAGATACAAACCAGAATCCTCGGAAG.......................................................................................................................................................................................................................................................................GAACACCGGAAAAGAAGACCACCAGTGTGACAGAGATGCCATCTTTGGACCTGATAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCATGGGGATAACAGAAGCACTAAGAATGCAGATGGAAGTCCAAAAGCAGCTTCACGAACAACTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGAGAAAGTTGCAGTTGCGGATCGAAGAACAAGGTAAATACCTTGAAATGATGTTTGAGAAGACAAAGGACATAGGAAAAGATCTAAAGGTATCATCATCATCAAGAACAGATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236056" ref_strand="+" ref_description="SGN-E236056 [cLED-16-N1]">
      <seq>ccatgctggccagtccgatactcttcctcctcctcttcctgctgctgctgcatcgtctgggcaaaactacccagttggtagcccatcgtctaccgcagcacagacgaaacctcggatgcgatggacacccgagcttcacgaagtctttgtagaagctatcagtaagcttggtgggagcgaaaaagctacaccaaagggagtcttgaagctcatgaatgttgaaggcctaaccatctatcatgtcaaaagccacttacagaaatatagaactgccagatacaaaccagaatcctcggaaggaacaccggaaaagaagaccaccagtgtgacagagatgccatctttggacctgataacgaccatggggataacagaagcactaagaatgcagatggaagtccaaaagcagcttcacgaacaacttgagatccagagaaagttgcagttgcggatcgaagaacaaggtaaataccttgaaatgatgtttgagaagacaaaggacataggaaaagatctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="310" stop="3098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="610" g_stop="791" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="792" i_stop="899" i_length="108">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="900" g_stop="976" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="259" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="977" i_stop="1052" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1053" g_stop="1092" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="299" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1093" i_stop="1355" i_length="263">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1356" g_stop="1413" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="357" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1414" i_stop="1864" i_length="451">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1865" g_stop="1934" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="427" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1935" i_stop="2707" i_length="773">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2708" g_stop="2798" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="518" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E236056" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="610" e_stop="791"/>
          <exon e_start="900" e_stop="976"/>
          <exon e_start="1053" e_stop="1092"/>
          <exon e_start="1356" e_stop="1413"/>
          <exon e_start="1865" e_stop="1934"/>
          <exon e_start="2708" e_stop="2798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGCTGGCCAGTCCGATACTCTTCCTCCTCCTCTTCCTGCTGCTGCTGCATCGTCTGGGCAAAACTACCCAGTTGGTAGCCCATCGTCTACCGCAGCACAGACGAAACCTCGGATGCGATGGACACCCGAGCTTCACGAAGTCTTTGTAGAAGCTATCAGTAAGCTTGGTGGGAGCGAAAGTGCGTGACCTCTTTGTTTCTATGTTCTATTTCTCTTTTTAGCAGTTTGGATGAGTAAGAGTTAACGTTTAACATTATTATATTGGATTCACACATTTGACTTTACAGAAGCTACACCAAAGGGAGTCTTGAAGCTCATGAATGTTGAAGGCCTAACCATCTATCATGTCAAAAGCCACTTACAGGTATAATAAATCCTTCCCATTAACCTTTTCCGAGGTGACAATTTATTTACCTTATACATTTCATTTTGAATTTCAGAAATATAGAACTGCCAGATACAAACCAGAATCCTCGGAAGGTAGAAATTTCCTCTTTGATTAGCTGATAACTTTTGCATCCGTCAAGGACTCAGTATACATTTTGCTAAAACGAAAACATATGTGTTACATCTCCTCATACTTGTACTTCCTGCCTCTCTAGTTTCTTGTGCATGTGTCAAAGTGATCCCCAACTGTGAATAAAACTAGGGATCTTAAGTTAAATTTATTGATGGTCTGTTGGACTTCCCCACAGTTTTTGAGATGAGAAGATTGAAATTCACAGACTGTAATCTCATTGCAGGAACACCGGAAAAGAAGACCACCAGTGTGACAGAGATGCCATCTTTGGACCTGATAACGTAAGTCTTTGCTATAACACTATGCATATCTATTGATTATGCAGCTGTCACACTTCTTGGATATCTGTTCGCTATGGGGAATAAGCGTTAAACACAATATGATATGAGCAAAGTTTATTTGATTGTAAGAATGTGTAATTTTACAACTGCAGATATCACCCCCTCCCTGTCGTTTTATTTTAATTTAATTGACTTGCCAATAAATTAAAACTCAGTCCAAAGAACAAATGAAGATCATCGTTTACAAACTCGAAAACATGCAAGGTTTGTCCATGTCCCTCTGTTTGGGAGCATCTGATAGAAGGACCAAAAAGTGTAGCATAGGGAATTCTTGTGATAGCAGCTAAATTCTAATCTAATTCTGGTTGCAATTTCCGTTTCCTGGATGATATAGTTGAAGTCTTTTTTGTGGTGATTGATTGTTAAAACTATATTTGGATTTTGGTAATAGGACCATGGGGATAACAGAAGCACTAAGAATGCAGATGGAAGTCCAAAAGCAGCTTCACGAACAACTTGAGGTGCGCGTAAACGCTCAAAATCTCCACCATTACTCATGTATCTATTCTTGCTTTTCTTTCTCCTGTTTTCATTGTCAAATCAGAAGTCAAAAATCTCTGGATAATTGAGAATGTAATCTCAAAAATCCTGTGCGTTGTGCGTCTGTAAAGACACATATCCAAGTTTGTCACTATTTTAGCAACATCTCAATGTATAGTGTGAAATTATAATAGGGAGAGCACACCACATTAAACAACTTGCAACTCCACCAAATTGCAGATGACATGGTCACTCACTCCATTCAGTACCTTTTTCCGTTTTAGTTGATCCATCATCCATGGCATAAGTATCTGACAAAATATCTGTAGTGCTTATGTAGCGGGTAGTTAGAAGCTTTTCTGGGTAAAACTACTTGAATACAGAGACCCGAAGTTATTATCAGTAATTTCATGAAATGTCAAGTTTTAGGGAGTTACTGAAACAACATCAATTACCGCAGAACTGAAAAGAATTGATTTCCTCTCAACTTGGAGCCTGTGTTGCTCGAACTCTTCAAAAATGCCGAGGGGTGCATGTCGGATCTTCCAAAAGTAGTACATTTTTAGAGGATCCGACAGGGGTGAGGTTTTGGAAATTCCGAGCAACATAACTTGGAGCTGATTCCTTTATCATCTTTTCTCCATTTCCTGTTTCCTATTTGTGAGAGTTTTTGATTTCCTCTAATACTTTCTATGGTTATAAAAGAATAAAAATCTATCAAGTATAATTATAGTTTGAATATCCATTTCCTCAGATCCAGAGAAAGTTGCAGTTGCGGATCGAAGAACAAGGTAAATACCTTGAAATGATGTTTGAGAAGACAAAGGACATAGGAAAAGATCTAA</genome_strand>
        <mrna_strand>CCATGCTGGCCAGTCCGATACTCTTCCTCCTCCTCTTCCTGCTGCTGCTGCATCGTCTGGGCAAAACTACCCAGTTGGTAGCCCATCGTCTACCGCAGCACAGACGAAACCTCGGATGCGATGGACACCCGAGCTTCACGAAGTCTTTGTAGAAGCTATCAGTAAGCTTGGTGGGAGCGAAA............................................................................................................AAGCTACACCAAAGGGAGTCTTGAAGCTCATGAATGTTGAAGGCCTAACCATCTATCATGTCAAAAGCCACTTACAG............................................................................AAATATAGAACTGCCAGATACAAACCAGAATCCTCGGAAG.......................................................................................................................................................................................................................................................................GAACACCGGAAAAGAAGACCACCAGTGTGACAGAGATGCCATCTTTGGACCTGATAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCATGGGGATAACAGAAGCACTAAGAATGCAGATGGAAGTCCAAAAGCAGCTTCACGAACAACTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGAGAAAGTTGCAGTTGCGGATCGAAGAACAAGGTAAATACCTTGAAATGATGTTTGAGAAGACAAAGGACATAGGAAAAGATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230939" ref_strand="+" ref_description="SGN-E230939 [cLED-5-A7]">
      <seq>ccatgctggccagtccgatactcttcctcctcctcttcctgctgctgctgcatcgtctgggcaaaactacccagttggtagcccatcgtctaccgcagcacagacgaaacctcggatgcgatggacacccgagcttcacgaagtctttgtagaagctatcagtaagcttggtgggagcgaaaaagctacaccaaagggagtcttgaagctcatgaatgttgaaggcctaaccatctatcatgtcaaaagccacttacagaaatatagaactgccagatacaaaccagaatcctcggaaggaacaccggaaaagaagaccaccagtgtgacagagatgccatctttggacctgataacgaccatggggataacagaagcactaagaatgcagatggaagtccaaaagcagcttcacgaacaacttgagatccagagaaagttgcagttgcggatcgaagaacaaggtaaataccttgaaatgatgtttgagaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="310" stop="3075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="610" g_stop="791" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="792" i_stop="899" i_length="108">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="900" g_stop="976" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="259" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="977" i_stop="1052" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1053" g_stop="1092" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="299" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1093" i_stop="1355" i_length="263">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1356" g_stop="1413" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="357" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1414" i_stop="1864" i_length="451">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1865" g_stop="1934" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="427" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1935" i_stop="2707" i_length="773">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2708" g_stop="2775" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="495" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E230939" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="610" e_stop="791"/>
          <exon e_start="900" e_stop="976"/>
          <exon e_start="1053" e_stop="1092"/>
          <exon e_start="1356" e_stop="1413"/>
          <exon e_start="1865" e_stop="1934"/>
          <exon e_start="2708" e_stop="2775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGCTGGCCAGTCCGATACTCTTCCTCCTCCTCTTCCTGCTGCTGCTGCATCGTCTGGGCAAAACTACCCAGTTGGTAGCCCATCGTCTACCGCAGCACAGACGAAACCTCGGATGCGATGGACACCCGAGCTTCACGAAGTCTTTGTAGAAGCTATCAGTAAGCTTGGTGGGAGCGAAAGTGCGTGACCTCTTTGTTTCTATGTTCTATTTCTCTTTTTAGCAGTTTGGATGAGTAAGAGTTAACGTTTAACATTATTATATTGGATTCACACATTTGACTTTACAGAAGCTACACCAAAGGGAGTCTTGAAGCTCATGAATGTTGAAGGCCTAACCATCTATCATGTCAAAAGCCACTTACAGGTATAATAAATCCTTCCCATTAACCTTTTCCGAGGTGACAATTTATTTACCTTATACATTTCATTTTGAATTTCAGAAATATAGAACTGCCAGATACAAACCAGAATCCTCGGAAGGTAGAAATTTCCTCTTTGATTAGCTGATAACTTTTGCATCCGTCAAGGACTCAGTATACATTTTGCTAAAACGAAAACATATGTGTTACATCTCCTCATACTTGTACTTCCTGCCTCTCTAGTTTCTTGTGCATGTGTCAAAGTGATCCCCAACTGTGAATAAAACTAGGGATCTTAAGTTAAATTTATTGATGGTCTGTTGGACTTCCCCACAGTTTTTGAGATGAGAAGATTGAAATTCACAGACTGTAATCTCATTGCAGGAACACCGGAAAAGAAGACCACCAGTGTGACAGAGATGCCATCTTTGGACCTGATAACGTAAGTCTTTGCTATAACACTATGCATATCTATTGATTATGCAGCTGTCACACTTCTTGGATATCTGTTCGCTATGGGGAATAAGCGTTAAACACAATATGATATGAGCAAAGTTTATTTGATTGTAAGAATGTGTAATTTTACAACTGCAGATATCACCCCCTCCCTGTCGTTTTATTTTAATTTAATTGACTTGCCAATAAATTAAAACTCAGTCCAAAGAACAAATGAAGATCATCGTTTACAAACTCGAAAACATGCAAGGTTTGTCCATGTCCCTCTGTTTGGGAGCATCTGATAGAAGGACCAAAAAGTGTAGCATAGGGAATTCTTGTGATAGCAGCTAAATTCTAATCTAATTCTGGTTGCAATTTCCGTTTCCTGGATGATATAGTTGAAGTCTTTTTTGTGGTGATTGATTGTTAAAACTATATTTGGATTTTGGTAATAGGACCATGGGGATAACAGAAGCACTAAGAATGCAGATGGAAGTCCAAAAGCAGCTTCACGAACAACTTGAGGTGCGCGTAAACGCTCAAAATCTCCACCATTACTCATGTATCTATTCTTGCTTTTCTTTCTCCTGTTTTCATTGTCAAATCAGAAGTCAAAAATCTCTGGATAATTGAGAATGTAATCTCAAAAATCCTGTGCGTTGTGCGTCTGTAAAGACACATATCCAAGTTTGTCACTATTTTAGCAACATCTCAATGTATAGTGTGAAATTATAATAGGGAGAGCACACCACATTAAACAACTTGCAACTCCACCAAATTGCAGATGACATGGTCACTCACTCCATTCAGTACCTTTTTCCGTTTTAGTTGATCCATCATCCATGGCATAAGTATCTGACAAAATATCTGTAGTGCTTATGTAGCGGGTAGTTAGAAGCTTTTCTGGGTAAAACTACTTGAATACAGAGACCCGAAGTTATTATCAGTAATTTCATGAAATGTCAAGTTTTAGGGAGTTACTGAAACAACATCAATTACCGCAGAACTGAAAAGAATTGATTTCCTCTCAACTTGGAGCCTGTGTTGCTCGAACTCTTCAAAAATGCCGAGGGGTGCATGTCGGATCTTCCAAAAGTAGTACATTTTTAGAGGATCCGACAGGGGTGAGGTTTTGGAAATTCCGAGCAACATAACTTGGAGCTGATTCCTTTATCATCTTTTCTCCATTTCCTGTTTCCTATTTGTGAGAGTTTTTGATTTCCTCTAATACTTTCTATGGTTATAAAAGAATAAAAATCTATCAAGTATAATTATAGTTTGAATATCCATTTCCTCAGATCCAGAGAAAGTTGCAGTTGCGGATCGAAGAACAAGGTAAATACCTTGAAATGATGTTTGAGAAGAC</genome_strand>
        <mrna_strand>CCATGCTGGCCAGTCCGATACTCTTCCTCCTCCTCTTCCTGCTGCTGCTGCATCGTCTGGGCAAAACTACCCAGTTGGTAGCCCATCGTCTACCGCAGCACAGACGAAACCTCGGATGCGATGGACACCCGAGCTTCACGAAGTCTTTGTAGAAGCTATCAGTAAGCTTGGTGGGAGCGAAA............................................................................................................AAGCTACACCAAAGGGAGTCTTGAAGCTCATGAATGTTGAAGGCCTAACCATCTATCATGTCAAAAGCCACTTACAG............................................................................AAATATAGAACTGCCAGATACAAACCAGAATCCTCGGAAG.......................................................................................................................................................................................................................................................................GAACACCGGAAAAGAAGACCACCAGTGTGACAGAGATGCCATCTTTGGACCTGATAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCATGGGGATAACAGAAGCACTAAGAATGCAGATGGAAGTCCAAAAGCAGCTTCACGAACAACTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGAGAAAGTTGCAGTTGCGGATCGAAGAACAAGGTAAATACCTTGAAATGATGTTTGAGAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239930" ref_strand="+" ref_description="SGN-E239930 [cLED-29-E24]">
      <seq>atgctgcccagtgcgatactcttactcctcctcttcctgctgatgctgcatcgtctgggcaaaactacccagttggtagcccatcgactaccgcagcacagacgaaacctcggatgcgatggacacccgagcttcacgaagtctttgtagaagctatcagtaagcttggtgggagcgaaaaagctacaccaaagggagtcttgaagctcatgaatgttgaaggcctaaccatctatcatgtcaaaagccacttacagaaatatagaactgccagatacaaaccagaatccttggaaggaacaccggaaaagaagaccaccagtgtgacagagatgccatctttggacctgattacgaccaatggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="312" stop="1714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="612" g_stop="791" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="792" i_stop="899" i_length="108">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="900" g_stop="976" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="257" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="977" i_stop="1052" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1053" g_stop="1092" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="297" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1093" i_stop="1355" i_length="263">
            <donor d_prob="0.894" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1356" g_stop="1413" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="355" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E239930" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="612" e_stop="791"/>
          <exon e_start="900" e_stop="976"/>
          <exon e_start="1053" e_stop="1092"/>
          <exon e_start="1356" e_stop="1413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGGCCAGTCCGATACTCTTCCTCCTCCTCTTCCTGCTGCTGCTGCATCGTCTGGGCAAAACTACCCAGTTGGTAGCCCATCGTCTACCGCAGCACAGACGAAACCTCGGATGCGATGGACACCCGAGCTTCACGAAGTCTTTGTAGAAGCTATCAGTAAGCTTGGTGGGAGCGAAAGTGCGTGACCTCTTTGTTTCTATGTTCTATTTCTCTTTTTAGCAGTTTGGATGAGTAAGAGTTAACGTTTAACATTATTATATTGGATTCACACATTTGACTTTACAGAAGCTACACCAAAGGGAGTCTTGAAGCTCATGAATGTTGAAGGCCTAACCATCTATCATGTCAAAAGCCACTTACAGGTATAATAAATCCTTCCCATTAACCTTTTCCGAGGTGACAATTTATTTACCTTATACATTTCATTTTGAATTTCAGAAATATAGAACTGCCAGATACAAACCAGAATCCTCGGAAGGTAGAAATTTCCTCTTTGATTAGCTGATAACTTTTGCATCCGTCAAGGACTCAGTATACATTTTGCTAAAACGAAAACATATGTGTTACATCTCCTCATACTTGTACTTCCTGCCTCTCTAGTTTCTTGTGCATGTGTCAAAGTGATCCCCAACTGTGAATAAAACTAGGGATCTTAAGTTAAATTTATTGATGGTCTGTTGGACTTCCCCACAGTTTTTGAGATGAGAAGATTGAAATTCACAGACTGTAATCTCATTGCAGGAACACCGGAAAAGAAGACCACCAGTGTGACAGAGATGCCATCTTTGGACCTGATAAC</genome_strand>
        <mrna_strand>ATGCTGCCCAGTGCGATACTCTTACTCCTCCTCTTCCTGCTGATGCTGCATCGTCTGGGCAAAACTACCCAGTTGGTAGCCCATCGACTACCGCAGCACAGACGAAACCTCGGATGCGATGGACACCCGAGCTTCACGAAGTCTTTGTAGAAGCTATCAGTAAGCTTGGTGGGAGCGAAA............................................................................................................AAGCTACACCAAAGGGAGTCTTGAAGCTCATGAATGTTGAAGGCCTAACCATCTATCATGTCAAAAGCCACTTACAG............................................................................AAATATAGAACTGCCAGATACAAACCAGAATCCTTGGAAG.......................................................................................................................................................................................................................................................................GAACACCGGAAAAGAAGACCACCAGTGTGACAGAGATGCCATCTTTGGACCTGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733122" ref_strand="+" ref_description="SGN-E733122 [LB04AB06]">
      <seq>ggtaaaactacccagttggtagcccatcgtctaccgcagcacagacgaaacctcggatgcgatggacacccgagcttcacgaagtctttgtagaagctatcagtaagcttggtgggagcgaaaaagctacaccaaagggagtcttgaagctcatgaatgttgaaggcctaaccatctatcatgtcaaaagccacttacagaaatatagaactgccagatacaaaccagaatcctcggaaggaacaccggaaaagaagaccaccagtgtgacagagatgccatctttggacctgataacgaccatggggataacagaagcactaagaatgcagatggaagtccaaaagcagcttcacgaacaacttgagatccagagaaagttgcagttgcggatcgaagaacaaggtaaataccttgaaatgatgtttgagaagacaaaggacataggaaaagatctaaaggtatcatcatcatcaagaacagatgaacatccttcaccatccaataagatgaagcatacatctcccaacgactaatcagaagcactcgagaaagatcgtttgtggaactcaccagacaaaaaagctcatgaagatcatgactcagatgatagagacttgtgttgttcacctacatcgaaacgagcaaaaacagaggaaatatcaggtcttcatgaatcttgacagactcatttgatatgtgaattgtctttgcaaaatgctgttgacttgatgaaagcttttggctaataattgtgtcatttttccttgtttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="369" stop="3414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="669" g_stop="791" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="792" i_stop="899" i_length="108">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="900" g_stop="976" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="200" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="977" i_stop="1052" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1053" g_stop="1092" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="240" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1093" i_stop="1355" i_length="263">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1356" g_stop="1413" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="298" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1414" i_stop="1864" i_length="451">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1865" g_stop="1934" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="368" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1935" i_stop="2707" i_length="773">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2708" g_stop="3113" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="774" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="775" polyA_stop="784"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E733122" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="669" e_stop="791"/>
          <exon e_start="900" e_stop="976"/>
          <exon e_start="1053" e_stop="1092"/>
          <exon e_start="1356" e_stop="1413"/>
          <exon e_start="1865" e_stop="1934"/>
          <exon e_start="2708" e_stop="3113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAAACTACCCAGTTGGTAGCCCATCGTCTACCGCAGCACAGACGAAACCTCGGATGCGATGGACACCCGAGCTTCACGAAGTCTTTGTAGAAGCTATCAGTAAGCTTGGTGGGAGCGAAAGTGCGTGACCTCTTTGTTTCTATGTTCTATTTCTCTTTTTAGCAGTTTGGATGAGTAAGAGTTAACGTTTAACATTATTATATTGGATTCACACATTTGACTTTACAGAAGCTACACCAAAGGGAGTCTTGAAGCTCATGAATGTTGAAGGCCTAACCATCTATCATGTCAAAAGCCACTTACAGGTATAATAAATCCTTCCCATTAACCTTTTCCGAGGTGACAATTTATTTACCTTATACATTTCATTTTGAATTTCAGAAATATAGAACTGCCAGATACAAACCAGAATCCTCGGAAGGTAGAAATTTCCTCTTTGATTAGCTGATAACTTTTGCATCCGTCAAGGACTCAGTATACATTTTGCTAAAACGAAAACATATGTGTTACATCTCCTCATACTTGTACTTCCTGCCTCTCTAGTTTCTTGTGCATGTGTCAAAGTGATCCCCAACTGTGAATAAAACTAGGGATCTTAAGTTAAATTTATTGATGGTCTGTTGGACTTCCCCACAGTTTTTGAGATGAGAAGATTGAAATTCACAGACTGTAATCTCATTGCAGGAACACCGGAAAAGAAGACCACCAGTGTGACAGAGATGCCATCTTTGGACCTGATAACGTAAGTCTTTGCTATAACACTATGCATATCTATTGATTATGCAGCTGTCACACTTCTTGGATATCTGTTCGCTATGGGGAATAAGCGTTAAACACAATATGATATGAGCAAAGTTTATTTGATTGTAAGAATGTGTAATTTTACAACTGCAGATATCACCCCCTCCCTGTCGTTTTATTTTAATTTAATTGACTTGCCAATAAATTAAAACTCAGTCCAAAGAACAAATGAAGATCATCGTTTACAAACTCGAAAACATGCAAGGTTTGTCCATGTCCCTCTGTTTGGGAGCATCTGATAGAAGGACCAAAAAGTGTAGCATAGGGAATTCTTGTGATAGCAGCTAAATTCTAATCTAATTCTGGTTGCAATTTCCGTTTCCTGGATGATATAGTTGAAGTCTTTTTTGTGGTGATTGATTGTTAAAACTATATTTGGATTTTGGTAATAGGACCATGGGGATAACAGAAGCACTAAGAATGCAGATGGAAGTCCAAAAGCAGCTTCACGAACAACTTGAGGTGCGCGTAAACGCTCAAAATCTCCACCATTACTCATGTATCTATTCTTGCTTTTCTTTCTCCTGTTTTCATTGTCAAATCAGAAGTCAAAAATCTCTGGATAATTGAGAATGTAATCTCAAAAATCCTGTGCGTTGTGCGTCTGTAAAGACACATATCCAAGTTTGTCACTATTTTAGCAACATCTCAATGTATAGTGTGAAATTATAATAGGGAGAGCACACCACATTAAACAACTTGCAACTCCACCAAATTGCAGATGACATGGTCACTCACTCCATTCAGTACCTTTTTCCGTTTTAGTTGATCCATCATCCATGGCATAAGTATCTGACAAAATATCTGTAGTGCTTATGTAGCGGGTAGTTAGAAGCTTTTCTGGGTAAAACTACTTGAATACAGAGACCCGAAGTTATTATCAGTAATTTCATGAAATGTCAAGTTTTAGGGAGTTACTGAAACAACATCAATTACCGCAGAACTGAAAAGAATTGATTTCCTCTCAACTTGGAGCCTGTGTTGCTCGAACTCTTCAAAAATGCCGAGGGGTGCATGTCGGATCTTCCAAAAGTAGTACATTTTTAGAGGATCCGACAGGGGTGAGGTTTTGGAAATTCCGAGCAACATAACTTGGAGCTGATTCCTTTATCATCTTTTCTCCATTTCCTGTTTCCTATTTGTGAGAGTTTTTGATTTCCTCTAATACTTTCTATGGTTATAAAAGAATAAAAATCTATCAAGTATAATTATAGTTTGAATATCCATTTCCTCAGATCCAGAGAAAGTTGCAGTTGCGGATCGAAGAACAAGGTAAATACCTTGAAATGATGTTTGAGAAGACAAAGGACATAGGAAAAGATCTAAAGGTATCATCATCATCAAGAACAGATGAACATCCTTCACCATCCAATAAGATGAAGCATACATCTCCCAACGACTAATCAGAAGCACTCGAGAAAGATCGTTTGTGGAACTCACCAGACAAAAAAGCTCATGAAGATCATGACTCAGATGATAGAGACTTGTGTTGTTCACCTACATCGAAACGAGCAAAAACAGAGGAAATATCAGGTCTTCATGAATCTTGACAGACTCATTTGATATGTGAATTGTCTTTGCAAAATGCTGTTGACTTGATGAAAGCTTTTGGCTAATAATTGTGTCATTTTTCCTTGTTTC</genome_strand>
        <mrna_strand>GGTAAAACTACCCAGTTGGTAGCCCATCGTCTACCGCAGCACAGACGAAACCTCGGATGCGATGGACACCCGAGCTTCACGAAGTCTTTGTAGAAGCTATCAGTAAGCTTGGTGGGAGCGAAA............................................................................................................AAGCTACACCAAAGGGAGTCTTGAAGCTCATGAATGTTGAAGGCCTAACCATCTATCATGTCAAAAGCCACTTACAG............................................................................AAATATAGAACTGCCAGATACAAACCAGAATCCTCGGAAG.......................................................................................................................................................................................................................................................................GAACACCGGAAAAGAAGACCACCAGTGTGACAGAGATGCCATCTTTGGACCTGATAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCATGGGGATAACAGAAGCACTAAGAATGCAGATGGAAGTCCAAAAGCAGCTTCACGAACAACTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGAGAAAGTTGCAGTTGCGGATCGAAGAACAAGGTAAATACCTTGAAATGATGTTTGAGAAGACAAAGGACATAGGAAAAGATCTAAAGGTATCATCATCATCAAGAACAGATGAACATCCTTCACCATCCAATAAGATGAAGCATACATCTCCCAACGACTAATCAGAAGCACTCGAGAAAGATCGTTTGTGGAACTCACCAGACAAAAAAGCTCATGAAGATCATGACTCAGATGATAGAGACTTGTGTTGTTCACCTACATCGAAACGAGCAAAAACAGAGGAAATATCAGGTCTTCATGAATCTTGACAGACTCATTTGATATGTGAATTGTCTTTGCAAAATGCTGTTGACTTGATGAAAGCTTTTGGCTAATAATTGTGTCATTTTTCCTTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337666" ref_strand="+" ref_description="SGN-E337666 [cTOE-17-F11]">
      <seq>cgagcttcacgaagtctttgtagaagctatcagtaagcttggtgggagcgaaagtgcgtgacctctttgtttctatgttctatttctctttttagcagtttggatgagtaagagttaacgtttaacattattatattggattcacacatttgactttacagaagctacaccaaagggagtcttgaagctcatgaatgttgaaggcctaaccatctatcatgtcaaaagccacttacaggtataataaatccttcccattaaccttttccgaggtgacaatttatttaccttatacatttcattttgaatttcagaaatatagaactgccagatacaaaccagaatcctcggaaggtagaaatttcctctttgattagctgataacttttgcatccgtcaaggactcagtatacattttgctaaaacgaaaacatatgtgttacatctcctcatacttgtacttcctgcctctctagtttcttgtgcatgtgtcaaagtgatccccaactgtgaataaaactagggatcttaagttaaatttattgatggtctgttggactttcccacagtttttgagatgagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="439" stop="1624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="739" g_stop="1324" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E337666" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="739" e_stop="1324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCTTCACGAAGTCTTTGTAGAAGCTATCAGTAAGCTTGGTGGGAGCGAAAGTGCGTGACCTCTTTGTTTCTATGTTCTATTTCTCTTTTTAGCAGTTTGGATGAGTAAGAGTTAACGTTTAACATTATTATATTGGATTCACACATTTGACTTTACAGAAGCTACACCAAAGGGAGTCTTGAAGCTCATGAATGTTGAAGGCCTAACCATCTATCATGTCAAAAGCCACTTACAGGTATAATAAATCCTTCCCATTAACCTTTTCCGAGGTGACAATTTATTTACCTTATACATTTCATTTTGAATTTCAGAAATATAGAACTGCCAGATACAAACCAGAATCCTCGGAAGGTAGAAATTTCCTCTTTGATTAGCTGATAACTTTTGCATCCGTCAAGGACTCAGTATACATTTTGCTAAAACGAAAACATATGTGTTACATCTCCTCATACTTGTACTTCCTGCCTCTCTAGTTTCTTGTGCATGTGTCAAAGTGATCCCCAACTGTGAATAAAACTAGGGATCTTAAGTTAAATTTATTGATGGTCTGTTGGACTTCCCCACAGTTTTTGAGATGAGAAGA</genome_strand>
        <mrna_strand>CGAGCTTCACGAAGTCTTTGTAGAAGCTATCAGTAAGCTTGGTGGGAGCGAAAGTGCGTGACCTCTTTGTTTCTATGTTCTATTTCTCTTTTTAGCAGTTTGGATGAGTAAGAGTTAACGTTTAACATTATTATATTGGATTCACACATTTGACTTTACAGAAGCTACACCAAAGGGAGTCTTGAAGCTCATGAATGTTGAAGGCCTAACCATCTATCATGTCAAAAGCCACTTACAGGTATAATAAATCCTTCCCATTAACCTTTTCCGAGGTGACAATTTATTTACCTTATACATTTCATTTTGAATTTCAGAAATATAGAACTGCCAGATACAAACCAGAATCCTCGGAAGGTAGAAATTTCCTCTTTGATTAGCTGATAACTTTTGCATCCGTCAAGGACTCAGTATACATTTTGCTAAAACGAAAACATATGTGTTACATCTCCTCATACTTGTACTTCCTGCCTCTCTAGTTTCTTGTGCATGTGTCAAAGTGATCCCCAACTGTGAATAAAACTAGGGATCTTAAGTTAAATTTATTGATGGTCTGTTGGACTTTCCCACAGTTTTTGAGATGAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321176" ref_strand="+" ref_description="SGN-E321176 [cTOB-13-N23]">
      <seq>tcggaaggaacaccggaaaagaagaccaccagtgtgacagagatgccatctttggacctgataacgaccatggggataacagaagcactaagaatgcagatggaagtccaaaagcagcttcacgaacaacttgagatccagagaaagttgcagttgcggatcgaagaacaaggtaaataccttgaaatgatgtttgagaagaaaaaggacataggaaaagatctaaaggtatcatcatcatcaagaacagatgaacatccttcaccatccaataagatgaagcatacatctcccaacgactaatcagaagcactcgagaaagaacgtttgtggaactcaccagacaaaaaagctcatgaagatcatgactcagatgatagagacttgtgttgttcacctacatcgaaacgagcaaaaacagaggaaatatcaggtcttcatgaatcttgacagactcatttgatatgtgaattgtctttgcaaaatgctgttgacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="1052" stop="3371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1086" g_stop="1092" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1093" i_stop="1355" i_length="263">
            <donor d_prob="0.894" d_score="0.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1356" g_stop="1413" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="65" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1414" i_stop="1864" i_length="451">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1865" g_stop="1934" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="135" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1935" i_stop="2707" i_length="773">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2708" g_stop="3071" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="499" r_length="364" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E321176" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1086" e_stop="1092"/>
          <exon e_start="1356" e_stop="1413"/>
          <exon e_start="1865" e_stop="1934"/>
          <exon e_start="2708" e_stop="3071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAAGGTAGAAATTTCCTCTTTGATTAGCTGATAACTTTTGCATCCGTCAAGGACTCAGTATACATTTTGCTAAAACGAAAACATATGTGTTACATCTCCTCATACTTGTACTTCCTGCCTCTCTAGTTTCTTGTGCATGTGTCAAAGTGATCCCCAACTGTGAATAAAACTAGGGATCTTAAGTTAAATTTATTGATGGTCTGTTGGACTTCCCCACAGTTTTTGAGATGAGAAGATTGAAATTCACAGACTGTAATCTCATTGCAGGAACACCGGAAAAGAAGACCACCAGTGTGACAGAGATGCCATCTTTGGACCTGATAACGTAAGTCTTTGCTATAACACTATGCATATCTATTGATTATGCAGCTGTCACACTTCTTGGATATCTGTTCGCTATGGGGAATAAGCGTTAAACACAATATGATATGAGCAAAGTTTATTTGATTGTAAGAATGTGTAATTTTACAACTGCAGATATCACCCCCTCCCTGTCGTTTTATTTTAATTTAATTGACTTGCCAATAAATTAAAACTCAGTCCAAAGAACAAATGAAGATCATCGTTTACAAACTCGAAAACATGCAAGGTTTGTCCATGTCCCTCTGTTTGGGAGCATCTGATAGAAGGACCAAAAAGTGTAGCATAGGGAATTCTTGTGATAGCAGCTAAATTCTAATCTAATTCTGGTTGCAATTTCCGTTTCCTGGATGATATAGTTGAAGTCTTTTTTGTGGTGATTGATTGTTAAAACTATATTTGGATTTTGGTAATAGGACCATGGGGATAACAGAAGCACTAAGAATGCAGATGGAAGTCCAAAAGCAGCTTCACGAACAACTTGAGGTGCGCGTAAACGCTCAAAATCTCCACCATTACTCATGTATCTATTCTTGCTTTTCTTTCTCCTGTTTTCATTGTCAAATCAGAAGTCAAAAATCTCTGGATAATTGAGAATGTAATCTCAAAAATCCTGTGCGTTGTGCGTCTGTAAAGACACATATCCAAGTTTGTCACTATTTTAGCAACATCTCAATGTATAGTGTGAAATTATAATAGGGAGAGCACACCACATTAAACAACTTGCAACTCCACCAAATTGCAGATGACATGGTCACTCACTCCATTCAGTACCTTTTTCCGTTTTAGTTGATCCATCATCCATGGCATAAGTATCTGACAAAATATCTGTAGTGCTTATGTAGCGGGTAGTTAGAAGCTTTTCTGGGTAAAACTACTTGAATACAGAGACCCGAAGTTATTATCAGTAATTTCATGAAATGTCAAGTTTTAGGGAGTTACTGAAACAACATCAATTACCGCAGAACTGAAAAGAATTGATTTCCTCTCAACTTGGAGCCTGTGTTGCTCGAACTCTTCAAAAATGCCGAGGGGTGCATGTCGGATCTTCCAAAAGTAGTACATTTTTAGAGGATCCGACAGGGGTGAGGTTTTGGAAATTCCGAGCAACATAACTTGGAGCTGATTCCTTTATCATCTTTTCTCCATTTCCTGTTTCCTATTTGTGAGAGTTTTTGATTTCCTCTAATACTTTCTATGGTTATAAAAGAATAAAAATCTATCAAGTATAATTATAGTTTGAATATCCATTTCCTCAGATCCAGAGAAAGTTGCAGTTGCGGATCGAAGAACAAGGTAAATACCTTGAAATGATGTTTGAGAAGACAAAGGACATAGGAAAAGATCTAAAGGTATCATCATCATCAAGAACAGATGAACATCCTTCACCATCCAATAAGATGAAGCATACATCTCCCAACGACTAATCAGAAGCACTCGAGAAAGATCGTTTGTGGAACTCACCAGACAAAAAAGCTCATGAAGATCATGACTCAGATGATAGAGACTTGTGTTGTTCACCTACATCGAAACGAGCAAAAACAGAGGAAATATCAGGTCTTCATGAATCTTGACAGACTCATTTGATATGTGAATTGTCTTTGCAAAATGCTGTTGACTTGA</genome_strand>
        <mrna_strand>TCGGAAG.......................................................................................................................................................................................................................................................................GAACACCGGAAAAGAAGACCACCAGTGTGACAGAGATGCCATCTTTGGACCTGATAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCATGGGGATAACAGAAGCACTAAGAATGCAGATGGAAGTCCAAAAGCAGCTTCACGAACAACTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGAGAAAGTTGCAGTTGCGGATCGAAGAACAAGGTAAATACCTTGAAATGATGTTTGAGAAGAAAAAGGACATAGGAAAAGATCTAAAGGTATCATCATCATCAAGAACAGATGAACATCCTTCACCATCCAATAAGATGAAGCATACATCTCCCAACGACTAATCAGAAGCACTCGAGAAAGAACGTTTGTGGAACTCACCAGACAAAAAAGCTCATGAAGATCATGACTCAGATGATAGAGACTTGTGTTGTTCACCTACATCGAAACGAGCAAAAACAGAGGAAATATCAGGTCTTCATGAATCTTGACAGACTCATTTGATATGTGAATTGTCTTTGCAAAATGCTGTTGACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547841" ref_strand="+" ref_description="SGN-E547841 [TUS-71-O22](-)">
      <seq>aagaaaagaagtatgtataactttgctccttgggatatcataagttgatgattatgccatgaacattgcttggggcaaattttgtcaaaatttttcactcattggcatatgaaactttgaaagttaaagggcaagactgaaaactaattttgtttctgaagtgatgttaaaagactatatatttgagtgctccaattacttttcttgaattcaacttgtttttcttgtcaacattcatttaatccaaataaattttcttttttacttgtgtttaaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="9014" stop="8131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8714" g_stop="8423" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E547841" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.028" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8714" e_stop="8423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAAAAAGTATGTATAACTTTGCTCCTTGGGATCTCACCATAAGTGGTAAGTTGATGATTATGCCATGAACATTGCTTGGGGCAAATTTTGTC-AAA-TTTTCACTCATTGGCATATGAAACTTTGAAAGTTAAAGGGCAAGACTGAAAACTAATTTTGTTTCTGAAGTGATGTTACAAGACTCTATATTTGAGTGCTCCCATTACTTTTCTTGAATTCAACTTGTTTTTCTTGTCAACATTCATTTAATCCAAATAAATTTTCTTTTTTACTTGTGTTTAGATGTTTGCA</genome_strand>
        <mrna_strand>AAGAAAAGAAGTATGTATAACTTTGCTCCTTGGGA--T-ATCAT-------AAGTTGATGATTATGCCATGAACATTGCTTGGGGCAAATTTTGTCAAAATTTTTCACTCATTGGCATATGAAACTTTGAAAGTTAAAGGGCAAGACTGAAAACTAATTTTGTTTCTGAAGTGATGTTAAAAGACTATATATTTGAGTGCTCCAATTACTTTTCTTGAATTCAACTTGTTTTTCTTGTCAACATTCATTTAATCCAAATAAATTTTCTTTTTTACTTGTGTTTAAAAAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547842" ref_strand="+" ref_description="SGN-E547842 [TUS-71-O22]">
      <seq>aagaaaagaagtatgtataactttgctccttgggatatcataagttgatgattatgccatgaacattgcttggggcaaattttgtcaaaatttttcactcattggcatatgaaactttgaaagttaaagggcaagactgaaaactaattttgtttctgaagtgatgttaaaagactatatatttgagtgctccaattacttttcttgaattcaacttgtttttcttgtcaacattcatttaatccaaataaattttcttttttacttgtgtttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="9014" stop="8131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8714" g_stop="8423" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E547842" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.028" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8714" e_stop="8423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAAAAAGTATGTATAACTTTGCTCCTTGGGATCTCACCATAAGTGGTAAGTTGATGATTATGCCATGAACATTGCTTGGGGCAAATTTTGTC-AAA-TTTTCACTCATTGGCATATGAAACTTTGAAAGTTAAAGGGCAAGACTGAAAACTAATTTTGTTTCTGAAGTGATGTTACAAGACTCTATATTTGAGTGCTCCCATTACTTTTCTTGAATTCAACTTGTTTTTCTTGTCAACATTCATTTAATCCAAATAAATTTTCTTTTTTACTTGTGTTTAGATGTTTGCA</genome_strand>
        <mrna_strand>AAGAAAAGAAGTATGTATAACTTTGCTCCTTGGGA--T-ATCAT-------AAGTTGATGATTATGCCATGAACATTGCTTGGGGCAAATTTTGTCAAAATTTTTCACTCATTGGCATATGAAACTTTGAAAGTTAAAGGGCAAGACTGAAAACTAATTTTGTTTCTGAAGTGATGTTAAAAGACTATATATTTGAGTGCTCCAATTACTTTTCTTGAATTCAACTTGTTTTTCTTGTCAACATTCATTTAATCCAAATAAATTTTCTTTTTTACTTGTGTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364266" ref_strand="+" ref_description="SGN-E364266 [cLPP-20-M3]">
      <seq>agaaaagaagtatgtataactttgctccttgggatatcataagttgatgattatgccatgaacattgcttggggcaaattttgtcaaaatttttcactcattggcatatgaaactttgaaagttaaagggcaagactgaaaactaattttgtttctgaagtgatgttaaaagactatatatttgagtgctccaattacttttcttgaattcaacttgtttttcttgtcaacattcatttaatccaaataaattttcttttttacttgtgtttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="9013" stop="8131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8713" g_stop="8423" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E364266" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.028" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8713" e_stop="8423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAAAGTATGTATAACTTTGCTCCTTGGGATCTCACCATAAGTGGTAAGTTGATGATTATGCCATGAACATTGCTTGGGGCAAATTTTGTC-AAA-TTTTCACTCATTGGCATATGAAACTTTGAAAGTTAAAGGGCAAGACTGAAAACTAATTTTGTTTCTGAAGTGATGTTACAAGACTCTATATTTGAGTGCTCCCATTACTTTTCTTGAATTCAACTTGTTTTTCTTGTCAACATTCATTTAATCCAAATAAATTTTCTTTTTTACTTGTGTTTAGATGTTTGCA</genome_strand>
        <mrna_strand>AGAAAAGAAGTATGTATAACTTTGCTCCTTGGGA--T-ATCAT-------AAGTTGATGATTATGCCATGAACATTGCTTGGGGCAAATTTTGTCAAAATTTTTCACTCATTGGCATATGAAACTTTGAAAGTTAAAGGGCAAGACTGAAAACTAATTTTGTTTCTGAAGTGATGTTAAAAGACTATATATTTGAGTGCTCCAATTACTTTTCTTGAATTCAACTTGTTTTTCTTGTCAACATTCATTTAATCCAAATAAATTTTCTTTTTTACTTGTGTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212312" ref_strand="+" ref_description="SGN-E212312 [cLEC-74-A19]">
      <seq>tatgcagattaactgtatgcatttctagatatatgcgcaaagtctggaactttttgcaagatttacagcatagggtctcaagctggggtgttgattgtgaaacaattggtgtttgattagtcttttgattgcttgatcatttgggttgcttgatatatgcacaagtacgggactttgacaagatttaggaataattgtgtttttgcaagtacttgattgcctagaccatttgggtgagttgataatagcagtatcatgcaaaggtatggtgacaagtacatggaaaaagtatgtatacccttgttggaagcctacattagataatgaaggtgaaaatagcagcagtagaggaggagaccctggcggaagtgttgatggattgtggtggtataaagatttggggcaccatgttaacggggagttctcgatggctgtaattcaagcgaataatatattggaggatcagagccagcttgaatcgggatcaatgagtttgtttgaatcaggtcctcagggcacctttgtangaatatatgatggccatgcangtgccgaagctgcccggtttataaaatggtcgcctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="14929" stop="13745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14629" g_stop="14045" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E212312" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14629" e_stop="14045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCAGATTAACTGTATGCATTTCTAGATATATGCGCAAAGTCTGGAACTTTTTGCAAGATTTACAGCATAGGGTCTCAAGCTGGGGTGTTGATTGTGAAACAATTGGTGTTTGATTAGTCTTTTGATTGCTTGATCATTTGGGTTGCTTGATATATGCACAAGTACGGGACTTTGACAAGATTTAGGAATAATTGTGTTTTTGCAAGTACTTGATTGCCTAGACCATTTGGGTGAGTTGATAATAGCAGTATCATGCAAAGGTATGGTGACAAGTACATGGAAAAAGTATGTATACCCTTGTTGGAAGCCTACATTAGATAATGAAGGTGAAAATAGCAGCAGTAGAGGAGGAGACCCTGGCGGAAGTGTTGATGGATTGTGGTGGTATAAAGATTTGGGGCACCATGTTAACGGGGAGTTCTCGATGGCTGTAATTCAAGCGAATAATATATTGGAGGATCAGAGCCAGCTTGAATCGGGATCAATGAGTTTGTTTGAATCAGGTCCTCAGGGCACCTTTGTAGGAATATATGATGGCCATGCAGGTGCCGAAGCTGCCCGGTTTAT-AAATGGTCGCCTTTT</genome_strand>
        <mrna_strand>TATGCAGATTAACTGTATGCATTTCTAGATATATGCGCAAAGTCTGGAACTTTTTGCAAGATTTACAGCATAGGGTCTCAAGCTGGGGTGTTGATTGTGAAACAATTGGTGTTTGATTAGTCTTTTGATTGCTTGATCATTTGGGTTGCTTGATATATGCACAAGTACGGGACTTTGACAAGATTTAGGAATAATTGTGTTTTTGCAAGTACTTGATTGCCTAGACCATTTGGGTGAGTTGATAATAGCAGTATCATGCAAAGGTATGGTGACAAGTACATGGAAAAAGTATGTATACCCTTGTTGGAAGCCTACATTAGATAATGAAGGTGAAAATAGCAGCAGTAGAGGAGGAGACCCTGGCGGAAGTGTTGATGGATTGTGGTGGTATAAAGATTTGGGGCACCATGTTAACGGGGAGTTCTCGATGGCTGTAATTCAAGCGAATAATATATTGGAGGATCAGAGCCAGCTTGAATCGGGATCAATGAGTTTGTTTGAATCAGGTCCTCAGGGCACCTTTGTANGAATATATGATGGCCATGCANGTGCCGAAGCTGCCCGGTTTATAAAATGGTCGCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335060" ref_strand="+" ref_description="SGN-E335060 [cTOE-9-D2]">
      <seq>tttttttttctctttgtcgcaagagaaaatccattcttttttactttgtcaaaatctgagttaaggggggtcttccattgcaacacctaattggaaatctctgatgcaaggctttgggtaaatattctatttagttagctaatgctttccgggtatgcagattaactgtatgcatttctagatatatgcgcaaagtctggaactttttgcaagaatttacagcatagggtctcaagctggggtgttgattgtgaaacaattggtgtttgattagtcttttgattgcttgatcatttgggttgcttgatatatgcacaagtaccgggactttgacaagatttaggaataattgtgtttttgcaagtacttgattgcctagaccatttgggtgagttgataatagcagtatcatgcaaaggtatggtgacaagtacatggaaaaagtatgtatacccttgttggaagcctacattagataatgaaggtgaaaatagcagcagtagaggaggagaccctggcggaagtgttgatggattgtnggtggtataaagatttggggcaccatgttaaccggggagttctcgatggcttgtaattcaagcgaataatatattgggaggatcagagccagcttgattcgggatcaaatgagtttgtttgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="16840" stop="13826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16540" g_stop="16431" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16430" i_stop="14673" i_length="1758">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14672" g_stop="14126" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="664" r_length="554" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E335060" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16540" e_stop="16431"/>
          <exon e_start="14672" e_stop="14126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTCTCTTTGTCGCAAGAGAAAATCCATTCTTTTTTATTTTGTCAAAATCTGAGTTAAGGGGGGTCTTCCATTGCCACACCTAATTGGAAATCTCTGATGCAAGGTATTCAATGTAATATCCAATCTTAATATTTGTATGTGCGATTCATTTTCTATATTTGATTTCTATATTGTGTATAATAATCTTGAAATTTGGAAACCCATTATTCATTTTAGTCGCAAATTGTTCATTTCTTGAGTCAAAATGCAATCTTTTGGATAATAATCATTTGCTTAGGTTGTTTTGTTTATGTTGATGTGCAAATTAATTGGTATCTGCATTGTGTATAATCCTGGAACCCCTTTTGTGTTCTAGTCTTTATTGTTGATTTAATTTGTCTGTAATGTAGTTTCTCTGTTTAGATTGTTGTTCTTGTTTATATGGGTATTCAGATTAATGATGTTTGCATTGTTTGATCTCTTTGAGCTGAGGGTCTATTTGGAAACAATGTCTATATCCCCACAAAGGTAAGGGATAAGGTCTGTGTACATCCTACCCTCTCCAGACCCCACTTTAGGGACTACACTGGGTATGTTGCTGCTGCTGCATTGTTTGGTCTCTATATTGTGTATCATAATCTTGAAATATGGAAACCCATTGTTTGTTTGTCTCAAATTGTTCATTTCTTGAGTCAAAATGCAATCTTTTGGATATAAGCATTTGCTGAGGTTGATCTTTTTTATGTTGTTGTGCAGATTAATTGGTCTTTGCATCGGTTGATTTCTGTATTGTGTATAATCATGAAACCTCTTTTGAGTTTAGTCTTAATGGTTGATTTAATTTGTCTGTAAAGTGTAATGTAGTTTCTCTGTTTAGATTGTTATTCTTGTTTATTTGGGTATTCAGATTAATGATGTTTATATTATTTGGTCTCTTTGAGTTGAGGGTCTATTGAAAACAACATCTCTACCCCCATAAATGTAGGAGGAAGGTCTGTATACATCCTACCCTTCTTAGACCCCACTTGTGGGATTACACTGGATATGTTGTTGTTGCATTGTTTGGTCTCTATATTGTGTATAATAATCTTGAAATTTGAAAATCCATTGTTCGGTTTAGTCTCAAAATGTTCATTTCTTGATTCAAAAATGCAATTTTTGGTATAAACATTTGCTTAGGTTGATCTAGTTTATGTTTTCGTGCAGATTATTGGCATCTGCCTTGGTTGATTTCTATTGCATAAAATCCTGAAATCCCTTATGTGTTTTAGTCTTAATTGTTGATTTATCTTGTCTGTAATGTAGTTCCTCTGTTTAGATTGTGGTTCTTGTTTATGTGGGTATTCAGATTAATGATGTTTGCATTGTATGGTCTATCAGAAACATCTCTACCCCACAAAGGTAGGGGAAAGGTCTGCGTACATCTTACCCTCCCCATACCCCACTTGTGGGACTACACTGGGTTTGCTCTTGCTGCATTGTTTGGTCTCTATATCGTGCATAATAATCTTGAAATTTGAAAACCCAGTGTTCGATTTAGTCTCAAATTGTTCATTTCTTGAGTCAAAATGCATTTTTTTTTATGGTACATTTTTTGGATATAAACATTTGCTTAGGTCGTTCTTGTTGATGTTTGTTGTGCAGATTAAATGAATTGGTTGATTTCTGCATTGTGTATAATCCTGAAACCCCTTTTATGTTTTATCTTAATTGTTGATTTAATTTGTCTGTAATGTAGTCTCTCTGTTAAATTGTTGTTCTTGTTTACGTGGGTATTCAGATTAATGATGTTTGCAATAGTTGGTCTCTATATTGTGCATAATCTTGAAATCCCATTAACTCTTTAGATTCAATTACTCATTTATTGTGTCTGTTAATGCAGGCTTTGGGTAAATATTCTATTTAGTTAGCTAATGCTTTCCGGGTATGCAGATTAACTGTATGCATTTCTAGATATATGCGCAAAGTCTGGAACTTTTTGCAAG-ATTTACAGCATAGGGTCTCAAGCTGGGGTGTTGATTGTGAAACAATTGGTGTTTGATTAGTCTTTTGATTGCTTGATCATTTGGGTTGCTTGATATATGCACAAGTA-CGGGACTTTGACAAGATTTAGGAATAATTGTGTTTTTGCAAGTACTTGATTGCCTAGACCATTTGGGTGAGTTGATAATAGCAGTATCATGCAAAGGTATGGTGACAAGTACATGGAAAAAGTATGTATACCCTTGTTGGAAGCCTACATTAGATAATGAAGGTGAAAATAGCAGCAGTAGAGGAGGAGACCCTGGCGGAAGTGTTGATGGATTGT-GGTGGTATAAAGATTTGGGGCACCATGTTAA-CGGGGAGTTCTCGATGGC-TGTAATTCAAGCGAATAATATATT-GGAGGATCAGAGCCAGCTTGAATCGGGATC-AATGAGTTTGTTTGAATC</genome_strand>
        <mrna_strand>TTTTTTTTTCTCTTTGTCGCAAGAGAAAATCCATTCTTTTTTACTTTGTCAAAATCTGAGTTAAGGGGGGTCTTCCATTGCAACACCTAATTGGAAATCTCTGATGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGGTAAATATTCTATTTAGTTAGCTAATGCTTTCCGGGTATGCAGATTAACTGTATGCATTTCTAGATATATGCGCAAAGTCTGGAACTTTTTGCAAGAATTTACAGCATAGGGTCTCAAGCTGGGGTGTTGATTGTGAAACAATTGGTGTTTGATTAGTCTTTTGATTGCTTGATCATTTGGGTTGCTTGATATATGCACAAGTACCGGGACTTTGACAAGATTTAGGAATAATTGTGTTTTTGCAAGTACTTGATTGCCTAGACCATTTGGGTGAGTTGATAATAGCAGTATCATGCAAAGGTATGGTGACAAGTACATGGAAAAAGTATGTATACCCTTGTTGGAAGCCTACATTAGATAATGAAGGTGAAAATAGCAGCAGTAGAGGAGGAGACCCTGGCGGAAGTGTTGATGGATTGTNGGTGGTATAAAGATTTGGGGCACCATGTTAACCGGGGAGTTCTCGATGGCTTGTAATTCAAGCGAATAATATATTGGGAGGATCAGAGCCAGCTTGATTCGGGATCAAATGAGTTTGTTTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390532" ref_strand="+" ref_description="SGN-E390532 [TUS-40-H1]">
      <seq>gttaaggggggtcttccattgccacacctaattggaaatctctgatgcaaggctttgggtaaatattctatttagttagctaatgctttccgggtatgcagattaactgtatgcatttctagatatatgcgcaaagtctggaactttttgcaagatttacagcatagggtctcaagctggggtgttgattgtgaaacaattggtgtttgattagtcttttgattgcttgatcatttgggttgcttgatatatgcacaagtacgggactttgacaagatttaggaataattgtgtttttgcaagtacttgattgcctagaccatttgggtgagttgataatagcagtatcatgcaaaggtatggtgacaagtacatggaaaaagtatgtatacccttgttggaagcctacattagataatgaacgtgaaaatagcagcagtagaggacgagaccctggcggaagtgttgatggattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="16781" stop="13948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16481" g_stop="16431" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16430" i_stop="14673" i_length="1758">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14672" g_stop="14246" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="478" r_length="427" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E390532" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16481" e_stop="16431"/>
          <exon e_start="14672" e_stop="14246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAGGGGGGTCTTCCATTGCCACACCTAATTGGAAATCTCTGATGCAAGGTATTCAATGTAATATCCAATCTTAATATTTGTATGTGCGATTCATTTTCTATATTTGATTTCTATATTGTGTATAATAATCTTGAAATTTGGAAACCCATTATTCATTTTAGTCGCAAATTGTTCATTTCTTGAGTCAAAATGCAATCTTTTGGATAATAATCATTTGCTTAGGTTGTTTTGTTTATGTTGATGTGCAAATTAATTGGTATCTGCATTGTGTATAATCCTGGAACCCCTTTTGTGTTCTAGTCTTTATTGTTGATTTAATTTGTCTGTAATGTAGTTTCTCTGTTTAGATTGTTGTTCTTGTTTATATGGGTATTCAGATTAATGATGTTTGCATTGTTTGATCTCTTTGAGCTGAGGGTCTATTTGGAAACAATGTCTATATCCCCACAAAGGTAAGGGATAAGGTCTGTGTACATCCTACCCTCTCCAGACCCCACTTTAGGGACTACACTGGGTATGTTGCTGCTGCTGCATTGTTTGGTCTCTATATTGTGTATCATAATCTTGAAATATGGAAACCCATTGTTTGTTTGTCTCAAATTGTTCATTTCTTGAGTCAAAATGCAATCTTTTGGATATAAGCATTTGCTGAGGTTGATCTTTTTTATGTTGTTGTGCAGATTAATTGGTCTTTGCATCGGTTGATTTCTGTATTGTGTATAATCATGAAACCTCTTTTGAGTTTAGTCTTAATGGTTGATTTAATTTGTCTGTAAAGTGTAATGTAGTTTCTCTGTTTAGATTGTTATTCTTGTTTATTTGGGTATTCAGATTAATGATGTTTATATTATTTGGTCTCTTTGAGTTGAGGGTCTATTGAAAACAACATCTCTACCCCCATAAATGTAGGAGGAAGGTCTGTATACATCCTACCCTTCTTAGACCCCACTTGTGGGATTACACTGGATATGTTGTTGTTGCATTGTTTGGTCTCTATATTGTGTATAATAATCTTGAAATTTGAAAATCCATTGTTCGGTTTAGTCTCAAAATGTTCATTTCTTGATTCAAAAATGCAATTTTTGGTATAAACATTTGCTTAGGTTGATCTAGTTTATGTTTTCGTGCAGATTATTGGCATCTGCCTTGGTTGATTTCTATTGCATAAAATCCTGAAATCCCTTATGTGTTTTAGTCTTAATTGTTGATTTATCTTGTCTGTAATGTAGTTCCTCTGTTTAGATTGTGGTTCTTGTTTATGTGGGTATTCAGATTAATGATGTTTGCATTGTATGGTCTATCAGAAACATCTCTACCCCACAAAGGTAGGGGAAAGGTCTGCGTACATCTTACCCTCCCCATACCCCACTTGTGGGACTACACTGGGTTTGCTCTTGCTGCATTGTTTGGTCTCTATATCGTGCATAATAATCTTGAAATTTGAAAACCCAGTGTTCGATTTAGTCTCAAATTGTTCATTTCTTGAGTCAAAATGCATTTTTTTTTATGGTACATTTTTTGGATATAAACATTTGCTTAGGTCGTTCTTGTTGATGTTTGTTGTGCAGATTAAATGAATTGGTTGATTTCTGCATTGTGTATAATCCTGAAACCCCTTTTATGTTTTATCTTAATTGTTGATTTAATTTGTCTGTAATGTAGTCTCTCTGTTAAATTGTTGTTCTTGTTTACGTGGGTATTCAGATTAATGATGTTTGCAATAGTTGGTCTCTATATTGTGCATAATCTTGAAATCCCATTAACTCTTTAGATTCAATTACTCATTTATTGTGTCTGTTAATGCAGGCTTTGGGTAAATATTCTATTTAGTTAGCTAATGCTTTCCGGGTATGCAGATTAACTGTATGCATTTCTAGATATATGCGCAAAGTCTGGAACTTTTTGCAAGATTTACAGCATAGGGTCTCAAGCTGGGGTGTTGATTGTGAAACAATTGGTGTTTGATTAGTCTTTTGATTGCTTGATCATTTGGGTTGCTTGATATATGCACAAGTACGGGACTTTGACAAGATTTAGGAATAATTGTGTTTTTGCAAGTACTTGATTGCCTAGACCATTTGGGTGAGTTGATAATAGCAGTATCATGCAAAGGTATGGTGACAAGTACATGGAAAAAGTATGTATACCCTTGTTGGAAGCCTACATTAGATAATGAAGGTGAAAATAGCAGCAGTAGAGGAGGAGACCCTGGCGGAAGTGTTGATGGATTGTG</genome_strand>
        <mrna_strand>GTTAAGGGGGGTCTTCCATTGCCACACCTAATTGGAAATCTCTGATGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGGTAAATATTCTATTTAGTTAGCTAATGCTTTCCGGGTATGCAGATTAACTGTATGCATTTCTAGATATATGCGCAAAGTCTGGAACTTTTTGCAAGATTTACAGCATAGGGTCTCAAGCTGGGGTGTTGATTGTGAAACAATTGGTGTTTGATTAGTCTTTTGATTGCTTGATCATTTGGGTTGCTTGATATATGCACAAGTACGGGACTTTGACAAGATTTAGGAATAATTGTGTTTTTGCAAGTACTTGATTGCCTAGACCATTTGGGTGAGTTGATAATAGCAGTATCATGCAAAGGTATGGTGACAAGTACATGGAAAAAGTATGTATACCCTTGTTGGAAGCCTACATTAGATAATGAACGTGAAAATAGCAGCAGTAGAGGACGAGACCCTGGCGGAAGTGTTGATGGATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329374" ref_strand="+" ref_description="SGN-E329374 [cTOD-2-E16]">
      <seq>ttaaagggggtcttccattgccacacctaattggaaatctctgatgcaaggctttgggtaaatattctatttagttagctaatgctttccgggtatgcagattaactgtatgcatttctagatatatgcgcaaagtctggaactttttgcaagatttacagcatagggtctcaagctggggtgttgattgtgaaacaattggtgtttgattagtcttttgattgcttgatcatttgggttgcttgatatatgcacaagtacgggactttgacaagatttaggaataattgtgtttttgcaagtacttgattgcctagaccatttgggtgagttgataatagcagtatcatgcaaaggtatggtgacaagtacatggaaaaagtatgtatacccttgttggaagcctacattagataatgaaggtgaaaatagcagcagtagaggaggagaccctggcggaagtgttgatggattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="16780" stop="13947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16480" g_stop="16431" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16430" i_stop="14673" i_length="1758">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14672" g_stop="14247" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="476" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E329374" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16480" e_stop="16431"/>
          <exon e_start="14672" e_stop="14247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGGGGGGTCTTCCATTGCCACACCTAATTGGAAATCTCTGATGCAAGGTATTCAATGTAATATCCAATCTTAATATTTGTATGTGCGATTCATTTTCTATATTTGATTTCTATATTGTGTATAATAATCTTGAAATTTGGAAACCCATTATTCATTTTAGTCGCAAATTGTTCATTTCTTGAGTCAAAATGCAATCTTTTGGATAATAATCATTTGCTTAGGTTGTTTTGTTTATGTTGATGTGCAAATTAATTGGTATCTGCATTGTGTATAATCCTGGAACCCCTTTTGTGTTCTAGTCTTTATTGTTGATTTAATTTGTCTGTAATGTAGTTTCTCTGTTTAGATTGTTGTTCTTGTTTATATGGGTATTCAGATTAATGATGTTTGCATTGTTTGATCTCTTTGAGCTGAGGGTCTATTTGGAAACAATGTCTATATCCCCACAAAGGTAAGGGATAAGGTCTGTGTACATCCTACCCTCTCCAGACCCCACTTTAGGGACTACACTGGGTATGTTGCTGCTGCTGCATTGTTTGGTCTCTATATTGTGTATCATAATCTTGAAATATGGAAACCCATTGTTTGTTTGTCTCAAATTGTTCATTTCTTGAGTCAAAATGCAATCTTTTGGATATAAGCATTTGCTGAGGTTGATCTTTTTTATGTTGTTGTGCAGATTAATTGGTCTTTGCATCGGTTGATTTCTGTATTGTGTATAATCATGAAACCTCTTTTGAGTTTAGTCTTAATGGTTGATTTAATTTGTCTGTAAAGTGTAATGTAGTTTCTCTGTTTAGATTGTTATTCTTGTTTATTTGGGTATTCAGATTAATGATGTTTATATTATTTGGTCTCTTTGAGTTGAGGGTCTATTGAAAACAACATCTCTACCCCCATAAATGTAGGAGGAAGGTCTGTATACATCCTACCCTTCTTAGACCCCACTTGTGGGATTACACTGGATATGTTGTTGTTGCATTGTTTGGTCTCTATATTGTGTATAATAATCTTGAAATTTGAAAATCCATTGTTCGGTTTAGTCTCAAAATGTTCATTTCTTGATTCAAAAATGCAATTTTTGGTATAAACATTTGCTTAGGTTGATCTAGTTTATGTTTTCGTGCAGATTATTGGCATCTGCCTTGGTTGATTTCTATTGCATAAAATCCTGAAATCCCTTATGTGTTTTAGTCTTAATTGTTGATTTATCTTGTCTGTAATGTAGTTCCTCTGTTTAGATTGTGGTTCTTGTTTATGTGGGTATTCAGATTAATGATGTTTGCATTGTATGGTCTATCAGAAACATCTCTACCCCACAAAGGTAGGGGAAAGGTCTGCGTACATCTTACCCTCCCCATACCCCACTTGTGGGACTACACTGGGTTTGCTCTTGCTGCATTGTTTGGTCTCTATATCGTGCATAATAATCTTGAAATTTGAAAACCCAGTGTTCGATTTAGTCTCAAATTGTTCATTTCTTGAGTCAAAATGCATTTTTTTTTATGGTACATTTTTTGGATATAAACATTTGCTTAGGTCGTTCTTGTTGATGTTTGTTGTGCAGATTAAATGAATTGGTTGATTTCTGCATTGTGTATAATCCTGAAACCCCTTTTATGTTTTATCTTAATTGTTGATTTAATTTGTCTGTAATGTAGTCTCTCTGTTAAATTGTTGTTCTTGTTTACGTGGGTATTCAGATTAATGATGTTTGCAATAGTTGGTCTCTATATTGTGCATAATCTTGAAATCCCATTAACTCTTTAGATTCAATTACTCATTTATTGTGTCTGTTAATGCAGGCTTTGGGTAAATATTCTATTTAGTTAGCTAATGCTTTCCGGGTATGCAGATTAACTGTATGCATTTCTAGATATATGCGCAAAGTCTGGAACTTTTTGCAAGATTTACAGCATAGGGTCTCAAGCTGGGGTGTTGATTGTGAAACAATTGGTGTTTGATTAGTCTTTTGATTGCTTGATCATTTGGGTTGCTTGATATATGCACAAGTACGGGACTTTGACAAGATTTAGGAATAATTGTGTTTTTGCAAGTACTTGATTGCCTAGACCATTTGGGTGAGTTGATAATAGCAGTATCATGCAAAGGTATGGTGACAAGTACATGGAAAAAGTATGTATACCCTTGTTGGAAGCCTACATTAGATAATGAAGGTGAAAATAGCAGCAGTAGAGGAGGAGACCCTGGCGGAAGTGTTGATGGATTGT</genome_strand>
        <mrna_strand>TTAAAGGGGGTCTTCCATTGCCACACCTAATTGGAAATCTCTGATGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGGTAAATATTCTATTTAGTTAGCTAATGCTTTCCGGGTATGCAGATTAACTGTATGCATTTCTAGATATATGCGCAAAGTCTGGAACTTTTTGCAAGATTTACAGCATAGGGTCTCAAGCTGGGGTGTTGATTGTGAAACAATTGGTGTTTGATTAGTCTTTTGATTGCTTGATCATTTGGGTTGCTTGATATATGCACAAGTACGGGACTTTGACAAGATTTAGGAATAATTGTGTTTTTGCAAGTACTTGATTGCCTAGACCATTTGGGTGAGTTGATAATAGCAGTATCATGCAAAGGTATGGTGACAAGTACATGGAAAAAGTATGTATACCCTTGTTGGAAGCCTACATTAGATAATGAAGGTGAAAATAGCAGCAGTAGAGGAGGAGACCCTGGCGGAAGTGTTGATGGATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331049" ref_strand="+" ref_description="SGN-E331049 [cTOD-6-O9]">
      <seq>cccacccccctctctctccctccttctatcacccttttccacattgtaaagaaacaattttttttctctttgtcgcaagagaaaatccattcttttttattttgtcaaaatctgagttaaggggggtcttccattgccacacctaattggaaatctctgatgcaaggctttgggtaaatattctatttagttagctaatgctttccgggtatgcagattaactgtatgcatttctagatatatgcgcaaagtctggaactttttgcaagatttacagcatagggtctcaagctggggtgttgattgtgaaacaattggtgtttgattagtcttttgattgcttgatcatttgggttgcttgatatatgcacaagtacgggactttgacaagatttaggaataattgtgtttttgcaagtacttgattgcctagaccatttgggtgagttgataatagcagtatcatgcaaaggtatggtgacaagtacatggaaaaagtatgtatacccttgttggaagcctacattagataatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="16897" stop="14003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16597" g_stop="16431" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16430" i_stop="14673" i_length="1758">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14672" g_stop="14303" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="536" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E331049" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16597" e_stop="16431"/>
          <exon e_start="14672" e_stop="14303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCCCCCTCTCTCTCCCTCCTTCTATCACCCTTTTCCACATTGTAAAGAAACAATTTTTTTTTCTCTTTGTCGCAAGAGAAAATCCATTCTTTTTTATTTTGTCAAAATCTGAGTTAAGGGGGGTCTTCCATTGCCACACCTAATTGGAAATCTCTGATGCAAGGTATTCAATGTAATATCCAATCTTAATATTTGTATGTGCGATTCATTTTCTATATTTGATTTCTATATTGTGTATAATAATCTTGAAATTTGGAAACCCATTATTCATTTTAGTCGCAAATTGTTCATTTCTTGAGTCAAAATGCAATCTTTTGGATAATAATCATTTGCTTAGGTTGTTTTGTTTATGTTGATGTGCAAATTAATTGGTATCTGCATTGTGTATAATCCTGGAACCCCTTTTGTGTTCTAGTCTTTATTGTTGATTTAATTTGTCTGTAATGTAGTTTCTCTGTTTAGATTGTTGTTCTTGTTTATATGGGTATTCAGATTAATGATGTTTGCATTGTTTGATCTCTTTGAGCTGAGGGTCTATTTGGAAACAATGTCTATATCCCCACAAAGGTAAGGGATAAGGTCTGTGTACATCCTACCCTCTCCAGACCCCACTTTAGGGACTACACTGGGTATGTTGCTGCTGCTGCATTGTTTGGTCTCTATATTGTGTATCATAATCTTGAAATATGGAAACCCATTGTTTGTTTGTCTCAAATTGTTCATTTCTTGAGTCAAAATGCAATCTTTTGGATATAAGCATTTGCTGAGGTTGATCTTTTTTATGTTGTTGTGCAGATTAATTGGTCTTTGCATCGGTTGATTTCTGTATTGTGTATAATCATGAAACCTCTTTTGAGTTTAGTCTTAATGGTTGATTTAATTTGTCTGTAAAGTGTAATGTAGTTTCTCTGTTTAGATTGTTATTCTTGTTTATTTGGGTATTCAGATTAATGATGTTTATATTATTTGGTCTCTTTGAGTTGAGGGTCTATTGAAAACAACATCTCTACCCCCATAAATGTAGGAGGAAGGTCTGTATACATCCTACCCTTCTTAGACCCCACTTGTGGGATTACACTGGATATGTTGTTGTTGCATTGTTTGGTCTCTATATTGTGTATAATAATCTTGAAATTTGAAAATCCATTGTTCGGTTTAGTCTCAAAATGTTCATTTCTTGATTCAAAAATGCAATTTTTGGTATAAACATTTGCTTAGGTTGATCTAGTTTATGTTTTCGTGCAGATTATTGGCATCTGCCTTGGTTGATTTCTATTGCATAAAATCCTGAAATCCCTTATGTGTTTTAGTCTTAATTGTTGATTTATCTTGTCTGTAATGTAGTTCCTCTGTTTAGATTGTGGTTCTTGTTTATGTGGGTATTCAGATTAATGATGTTTGCATTGTATGGTCTATCAGAAACATCTCTACCCCACAAAGGTAGGGGAAAGGTCTGCGTACATCTTACCCTCCCCATACCCCACTTGTGGGACTACACTGGGTTTGCTCTTGCTGCATTGTTTGGTCTCTATATCGTGCATAATAATCTTGAAATTTGAAAACCCAGTGTTCGATTTAGTCTCAAATTGTTCATTTCTTGAGTCAAAATGCATTTTTTTTTATGGTACATTTTTTGGATATAAACATTTGCTTAGGTCGTTCTTGTTGATGTTTGTTGTGCAGATTAAATGAATTGGTTGATTTCTGCATTGTGTATAATCCTGAAACCCCTTTTATGTTTTATCTTAATTGTTGATTTAATTTGTCTGTAATGTAGTCTCTCTGTTAAATTGTTGTTCTTGTTTACGTGGGTATTCAGATTAATGATGTTTGCAATAGTTGGTCTCTATATTGTGCATAATCTTGAAATCCCATTAACTCTTTAGATTCAATTACTCATTTATTGTGTCTGTTAATGCAGGCTTTGGGTAAATATTCTATTTAGTTAGCTAATGCTTTCCGGGTATGCAGATTAACTGTATGCATTTCTAGATATATGCGCAAAGTCTGGAACTTTTTGCAAGATTTACAGCATAGGGTCTCAAGCTGGGGTGTTGATTGTGAAACAATTGGTGTTTGATTAGTCTTTTGATTGCTTGATCATTTGGGTTGCTTGATATATGCACAAGTACGGGACTTTGACAAGATTTAGGAATAATTGTGTTTTTGCAAGTACTTGATTGCCTAGACCATTTGGGTGAGTTGATAATAGCAGTATCATGCAAAGGTATGGTGACAAGTACATGGAAAAAGTATGTATACCCTTGTTGGAAGCCTACATTAGATAATGA</genome_strand>
        <mrna_strand>CCCACCCCCCTCTCTCTCCCTCCTTCTATCACCCTTTTCCACATTGTAAAGAAACAA-TTTTTTTTCTCTTTGTCGCAAGAGAAAATCCATTCTTTTTTATTTTGTCAAAATCTGAGTTAAGGGGGGTCTTCCATTGCCACACCTAATTGGAAATCTCTGATGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGGTAAATATTCTATTTAGTTAGCTAATGCTTTCCGGGTATGCAGATTAACTGTATGCATTTCTAGATATATGCGCAAAGTCTGGAACTTTTTGCAAGATTTACAGCATAGGGTCTCAAGCTGGGGTGTTGATTGTGAAACAATTGGTGTTTGATTAGTCTTTTGATTGCTTGATCATTTGGGTTGCTTGATATATGCACAAGTACGGGACTTTGACAAGATTTAGGAATAATTGTGTTTTTGCAAGTACTTGATTGCCTAGACCATTTGGGTGAGTTGATAATAGCAGTATCATGCAAAGGTATGGTGACAAGTACATGGAAAAAGTATGTATACCCTTGTTGGAAGCCTACATTAGATAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402656" ref_strand="+" ref_description="SGN-E402656 [PPC-8-G20]">
      <seq>cgccagcgccattcattggcgtggcggagctaaagaaatgggccttgtatagggccttaattgcagagtttgtagcaactcttttgttactttacattggactgttaaccatatttggaaatgtgagtgaaagagcaaagaatgatgatccatgtagtggtgttgggcttcttggtattgcttggtcccctggtggcatggttttcattcttgtatattgtactgctggcatttctggtggtcatattaatccagcagtgacctttgggctattcctttcaaggaaaatatccctaataagagggctattgtacattatagttcaatacttgggagccagttgcggtgctgctctagtgaaggccatttataaatctaagtacgaaatctacggtggtggcgttaacttgatcgcgcccggctatactaagggcgttgcatggtccgcggagatgatcggaacttttgttcttgtttacacggttttatcggccactgactctaagaggaatgctagagactcacatgttcctgtgttggcacctctaccaattggatttgctgtgtttttggttcacttggccacaatcccaattactggcacagggatcaaccctgctagaagttttggagctgctgtcatctacaataaacatatagcatggaaagaccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="18802" stop="20776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19102" g_stop="19332" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.874"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19333" i_stop="19836" i_length="504">
            <donor d_prob="0.921" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19837" g_stop="20132" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="533" r_length="296" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20133" i_stop="20333" i_length="201">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20334" g_stop="20470" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="670" r_length="137" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E402656" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19102" e_stop="19332"/>
          <exon e_start="19837" e_stop="20132"/>
          <exon e_start="20334" e_stop="20470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCAGCGCCATTTATTGGCGCGGCGGAGCTAAAGAAATGGGCCTTGTATAGGGCCTTAATTGCAGAGTTTGTAGCAACTCTTTTGTTACTTTACATTGGACAGTTAACCATAATGGGATATAAGAGTGAAAGTG---A---TCATGATCCATGTGGTAGTGTTGGGCTTCTTGGTGTTGCTTGGGTCTTTGGTGGCATGGTTTTCATTCTTGTATATTGTACTGCTGGCATTTCTGGTGAGTTTTCTCTTATTTATTTTGATAGGGGTACTTAAATAAGCGAGCTGGATCAAATTTAAACGGGTTAAAATAGATCAAATCAACAAGTAGTAATAACGTGCGCTAGCTTCAATATCTTTTTTCAGATTTGAAATTGAAAAATAGTCATTATTATAGAATTTCAAATTTAACAAATAATGTCCTGAGTTTCATCGGTATATCATTCAAAATTTTATGATAATGTGTATTTATGAGCCAAAATTTTATGATAATGTGTATTTAAGTCCGCTTATTAGCATCATAGTATATATATACACTCTAATGATATTACAAATAGAGAAATAATGATTTAATGACTAGAAAAAGTGGACAATCTAATAAATAGTCGACCATAGATCCAACAAGGATAAATATATTACATAGACTCCAATTTGAGTAAACACTTCACCTAGTAGGTCCAATTTGTTAGTTTTCTTATTAATCTATACTTTATGATATTTTACTTTTTTGGGATTATTGTAGGTGGTCATATTAATCCAGCAGTGACCTTTGGGCTATTCCTTTCAAGGAAAATATCTTTAATAAGAGGCTTATTGTACATTGTAGTTCAATATTTGGGAGCCATTTGTGGTACTGCTCTAGTTAAGGCCATTTATAAATCTAAGTTCGAACTCTACGGTGGTGGCGTTAACTCGGTCAGCCCCGGCTATACTAGGGGCGTTGCATGGTCCGCGGAGATGATTGGAACATTTGTTCTTGTTTACACGGTTTTATCGGCCACTGACTCTAAGAGGAATGCTAGAGACTCACATGTTCCTGTAAGTATAATAGTTCATTTTGAGTTTAACCTCAATTATTATCGTTTAGTTAACCTATACATGTTTGATTGAACAACGTATCTCGATTAATCTTATGTTTGTATGTTATTAAATACTGACAAGATTAGAATAGAAATTTTCTGATTCAAATTCCGTAATCTGTTTGGTCAAACTTCTAAAATGTATATTATGTTATTGTAGGTGTTGGCCCCTCTACCAATTGGATTTGCTGTGTTTTTGGTCCACTTGGCCACAATCCCAATTACTGGCACAGGGATCAACCCTGCTAGAAGTCTTGGAGCTGCTGTCATCTACAATCAACAAATAGCATGGGAGGA</genome_strand>
        <mrna_strand>CGCCAGCGCCATTCATTGGCGTGGCGGAGCTAAAGAAATGGGCCTTGTATAGGGCCTTAATTGCAGAGTTTGTAGCAACTCTTTTGTTACTTTACATTGGACTGTTAACCATATTTGGAAATGTGAGTGAAAGAGCAAAGAATGATGATCCATGTAGTGGTGTTGGGCTTCTTGGTATTGCTTGGTCCCCTGGTGGCATGGTTTTCATTCTTGTATATTGTACTGCTGGCATTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCATATTAATCCAGCAGTGACCTTTGGGCTATTCCTTTCAAGGAAAATATCCCTAATAAGAGGGCTATTGTACATTATAGTTCAATACTTGGGAGCCAGTTGCGGTGCTGCTCTAGTGAAGGCCATTTATAAATCTAAGTACGAAATCTACGGTGGTGGCGTTAACTTGATCGCGCCCGGCTATACTAAGGGCGTTGCATGGTCCGCGGAGATGATCGGAACTTTTGTTCTTGTTTACACGGTTTTATCGGCCACTGACTCTAAGAGGAATGCTAGAGACTCACATGTTCCT.........................................................................................................................................................................................................GTGTTGGCACCTCTACCAATTGGATTTGCTGTGTTTTTGGTTCACTTGGCCACAATCCCAATTACTGGCACAGGGATCAACCCTGCTAGAAGTTTTGGAGCTGCTGTCATCTACAATAAACATATAGCATGGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E432923" ref_strand="+" ref_description="SGN-E432923 [STM-57-D2]">
      <seq>cgctagcgccattcattggcgtggcggagctaaagaaatgggccttgtatagggccttaattgcagagtttgtagcaactcttttgttactttacattggactgttaaccatatttggaaatgtgagtgaaagagcaaagaatgatgatccatgtagtggtgttgggcttcttggtattgcttggtcccctggtggcatggttttcattcttgtatattgtactgctggcatttctggtggtcatattaatccagcagtgacctttgggctattcctttcaaggaaaatatccctaataagagggctattgtacattatagttcaatacttgggagccagttgcggtgctgctctagtgaaggccatttataaatctaagtacgaaatctacggtggtggcgttaacttgatcgcgcccggctatactaagggcgttgcatggtccgcggagatgatcggaacttttgttcttgtttacacggttttatcggccactgactctaagaggaatgctagagactcacatgttcctgtgttggcacctctaccatttggatttggtgtgtttttggttcactttggcacaatcccaattactggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="18802" stop="20702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19102" g_stop="19332" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.870"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19333" i_stop="19836" i_length="504">
            <donor d_prob="0.921" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19837" g_stop="20132" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="533" r_length="296" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20133" i_stop="20333" i_length="201">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20334" g_stop="20402" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="602" r_length="69" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E432923" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19102" e_stop="19332"/>
          <exon e_start="19837" e_stop="20132"/>
          <exon e_start="20334" e_stop="20402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCAGCGCCATTTATTGGCGCGGCGGAGCTAAAGAAATGGGCCTTGTATAGGGCCTTAATTGCAGAGTTTGTAGCAACTCTTTTGTTACTTTACATTGGACAGTTAACCATAATGGGATATAAGAGTGAAAGTG---A---TCATGATCCATGTGGTAGTGTTGGGCTTCTTGGTGTTGCTTGGGTCTTTGGTGGCATGGTTTTCATTCTTGTATATTGTACTGCTGGCATTTCTGGTGAGTTTTCTCTTATTTATTTTGATAGGGGTACTTAAATAAGCGAGCTGGATCAAATTTAAACGGGTTAAAATAGATCAAATCAACAAGTAGTAATAACGTGCGCTAGCTTCAATATCTTTTTTCAGATTTGAAATTGAAAAATAGTCATTATTATAGAATTTCAAATTTAACAAATAATGTCCTGAGTTTCATCGGTATATCATTCAAAATTTTATGATAATGTGTATTTATGAGCCAAAATTTTATGATAATGTGTATTTAAGTCCGCTTATTAGCATCATAGTATATATATACACTCTAATGATATTACAAATAGAGAAATAATGATTTAATGACTAGAAAAAGTGGACAATCTAATAAATAGTCGACCATAGATCCAACAAGGATAAATATATTACATAGACTCCAATTTGAGTAAACACTTCACCTAGTAGGTCCAATTTGTTAGTTTTCTTATTAATCTATACTTTATGATATTTTACTTTTTTGGGATTATTGTAGGTGGTCATATTAATCCAGCAGTGACCTTTGGGCTATTCCTTTCAAGGAAAATATCTTTAATAAGAGGCTTATTGTACATTGTAGTTCAATATTTGGGAGCCATTTGTGGTACTGCTCTAGTTAAGGCCATTTATAAATCTAAGTTCGAACTCTACGGTGGTGGCGTTAACTCGGTCAGCCCCGGCTATACTAGGGGCGTTGCATGGTCCGCGGAGATGATTGGAACATTTGTTCTTGTTTACACGGTTTTATCGGCCACTGACTCTAAGAGGAATGCTAGAGACTCACATGTTCCTGTAAGTATAATAGTTCATTTTGAGTTTAACCTCAATTATTATCGTTTAGTTAACCTATACATGTTTGATTGAACAACGTATCTCGATTAATCTTATGTTTGTATGTTATTAAATACTGACAAGATTAGAATAGAAATTTTCTGATTCAAATTCCGTAATCTGTTTGGTCAAACTTCTAAAATGTATATTATGTTATTGTAGGTGTTGGCCCCTCTACCAATTGGATTTGCTGTGTTTTTGGTCCACTTGGCCACAATCCCAATTACTGGC</genome_strand>
        <mrna_strand>CGCTAGCGCCATTCATTGGCGTGGCGGAGCTAAAGAAATGGGCCTTGTATAGGGCCTTAATTGCAGAGTTTGTAGCAACTCTTTTGTTACTTTACATTGGACTGTTAACCATATTTGGAAATGTGAGTGAAAGAGCAAAGAATGATGATCCATGTAGTGGTGTTGGGCTTCTTGGTATTGCTTGGTCCCCTGGTGGCATGGTTTTCATTCTTGTATATTGTACTGCTGGCATTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCATATTAATCCAGCAGTGACCTTTGGGCTATTCCTTTCAAGGAAAATATCCCTAATAAGAGGGCTATTGTACATTATAGTTCAATACTTGGGAGCCAGTTGCGGTGCTGCTCTAGTGAAGGCCATTTATAAATCTAAGTACGAAATCTACGGTGGTGGCGTTAACTTGATCGCGCCCGGCTATACTAAGGGCGTTGCATGGTCCGCGGAGATGATCGGAACTTTTGTTCTTGTTTACACGGTTTTATCGGCCACTGACTCTAAGAGGAATGCTAGAGACTCACATGTTCCT.........................................................................................................................................................................................................GTGTTGGCACCTCTACCATTTGGATTTGGTGTGTTTTTGGTTCACTTTGGCACAATCCCAATTACTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E432924" ref_strand="-" ref_description="SGN-E432924 [STM-57-D2]">
      <seq>aaagagcaaagaatgatgatccatgtagtggtgttgggcttcttgttattgcttggtcccctggtggcatggttttcattcttgtatattgtactgctggcatttctggtggtcatattaatccagcagtgacctttgggctattcctttcaaggaaaatatccctaataagagggctattgtacattatagttcaatacttgggagccagttgcggtgctgctctagtgaaggccatttataaatctaagtacgaaatctacggtggtggcgttaacttgatcgcgcccggctatactaagggcgttgcatggtccgcggagatgatcggaacttttgttcttgtttacacggttttatcggccactgactctaagaggaatgctagagactcacatgttcctgtgttggcacctctaccaattggatttgctgtgtttttggttcacttggccacaatcccaattactggcacagggatcaaccctgctagaagttttggagctgctgtcatctacaataaacatatagcatggaaggaccttgggattttttctggaggacctttcacaggagcaattattgcagcaatctaccaactaatattgaggggatgtaaatggagataaatggtgcaacatatatttgctctacactacgtgttgtgagttaagaagtttagtttgtggaaacaatgttgatttgcattggtttcgattgcattaatcagctcaaaattgaatcttttgctagcaaaaaaaaaagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="18937" stop="21427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19223" g_stop="19332" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.873"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19333" i_stop="19836" i_length="504">
            <donor d_prob="0.921" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19837" g_stop="20132" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="404" r_length="296" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20133" i_stop="20333" i_length="201">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20334" g_stop="20475" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="545" r_length="141" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20476" i_stop="20914" i_length="439">
            <donor d_prob="0.938" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20915" g_stop="21126" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="755" r_length="210" r_score="0.901"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21127" i_stop="21364" i_length="238">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21365" g_stop="21379" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="756" r_stop="768" r_length="13" r_score="0.733"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E432924" ref_strand="-">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432924" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19223" e_stop="19332"/>
          <exon e_start="19837" e_stop="20132"/>
          <exon e_start="20334" e_stop="20475"/>
          <exon e_start="20915" e_stop="21126"/>
          <exon e_start="21365" e_stop="21379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAGTGAAAGTGATCATGATCCATGTGGTAGTGTTGGGCTTCTTGGTGTTGCTTGGGTCTTTGGTGGCATGGTTTTCATTCTTGTATATTGTACTGCTGGCATTTCTGGTGAGTTTTCTCTTATTTATTTTGATAGGGGTACTTAAATAAGCGAGCTGGATCAAATTTAAACGGGTTAAAATAGATCAAATCAACAAGTAGTAATAACGTGCGCTAGCTTCAATATCTTTTTTCAGATTTGAAATTGAAAAATAGTCATTATTATAGAATTTCAAATTTAACAAATAATGTCCTGAGTTTCATCGGTATATCATTCAAAATTTTATGATAATGTGTATTTATGAGCCAAAATTTTATGATAATGTGTATTTAAGTCCGCTTATTAGCATCATAGTATATATATACACTCTAATGATATTACAAATAGAGAAATAATGATTTAATGACTAGAAAAAGTGGACAATCTAATAAATAGTCGACCATAGATCCAACAAGGATAAATATATTACATAGACTCCAATTTGAGTAAACACTTCACCTAGTAGGTCCAATTTGTTAGTTTTCTTATTAATCTATACTTTATGATATTTTACTTTTTTGGGATTATTGTAGGTGGTCATATTAATCCAGCAGTGACCTTTGGGCTATTCCTTTCAAGGAAAATATCTTTAATAAGAGGCTTATTGTACATTGTAGTTCAATATTTGGGAGCCATTTGTGGTACTGCTCTAGTTAAGGCCATTTATAAATCTAAGTTCGAACTCTACGGTGGTGGCGTTAACTCGGTCAGCCCCGGCTATACTAGGGGCGTTGCATGGTCCGCGGAGATGATTGGAACATTTGTTCTTGTTTACACGGTTTTATCGGCCACTGACTCTAAGAGGAATGCTAGAGACTCACATGTTCCTGTAAGTATAATAGTTCATTTTGAGTTTAACCTCAATTATTATCGTTTAGTTAACCTATACATGTTTGATTGAACAACGTATCTCGATTAATCTTATGTTTGTATGTTATTAAATACTGACAAGATTAGAATAGAAATTTTCTGATTCAAATTCCGTAATCTGTTTGGTCAAACTTCTAAAATGTATATTATGTTATTGTAGGTGTTGGCCCCTCTACCAATTGGATTTGCTGTGTTTTTGGTCCACTTGGCCACAATCCCAATTACTGGCACAGGGATCAACCCTGCTAGAAGTCTTGGAGCTGCTGTCATCTACAATCAACAAATAGCATGGGAGGACCCTTGTAAGAATACACCCCCCCCCCCCCTTCTTTGATTTAGTAATAACAACGTAATGTGTGATGTGTGAGTCAGACTTATATTTTGAGCTTTAAAAGTTATGTGGAATCAGAATATGAACTTTATATGATATCGAATTAATGTACAAGGAATAACTAAGTTTATCGTAAATTTGAAATCATATTTGAAAGTCGCACGTCGAAAATAAAGTGTTACTGAATAAGGTGATTCTATATTCAGAGTTCGAAGACAATATTCTAATTAAAGACGAATCAATACTTAACATTCTATCTAGCCCTTATTAATTAATTGACTCTTCAATATAGATATCAGATAATTTAGTCAGGTATATAGCTTAAATATCAAATACTTTTTATACATAAATATTACTATCATATTGCAAATATTTTTTTATTTTTTAATATTTGATATTTTTTTTTACAGGGGATCTTTTCTGGAGGACCTTTCACAGGAGCACTTATTGCAGCAATCTACCAACTAATACTGAGGGGATGCAAATGGAGATAAGTGATGCAACATATATTTGCTCTAGAATATGTGTTTGTGATTTATGAAGTTTAGTTTGAGGAAACAATGTTTGATTTGTGTTTGTTTTGATTGCATTAATCAGTTCAAAATTGAATCTTTTGCAAACAATTTTTTTTACTTTTATAATACGTTCAGTATTAAATCGATGAGTTGAGCTAAATTTAGATAAATTAAAATAGTTGAATCAATAAATAGATGAACTGATATGAAATGAACCAAGTCAAAATGAGTTAAATAATGTTATTTTTCTTGACTTTTTTTTTGCTCTTCATATTCCTTTCTTTACTTTAGATAAAGCGATAAAAGAAATAAGTGATAAAAATTGTACATATGTATGTAATATAGAAAGAAGGAAAGAGA</genome_strand>
        <mrna_strand>AAAGAG-CAAAG-AATGATGATCCATGTAGTGGTGTTGGGCTTCTTGTTATTGCTTGGTCCCCTGGTGGCATGGTTTTCATTCTTGTATATTGTACTGCTGGCATTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCATATTAATCCAGCAGTGACCTTTGGGCTATTCCTTTCAAGGAAAATATCCCTAATAAGAGGGCTATTGTACATTATAGTTCAATACTTGGGAGCCAGTTGCGGTGCTGCTCTAGTGAAGGCCATTTATAAATCTAAGTACGAAATCTACGGTGGTGGCGTTAACTTGATCGCGCCCGGCTATACTAAGGGCGTTGCATGGTCCGCGGAGATGATCGGAACTTTTGTTCTTGTTTACACGGTTTTATCGGCCACTGACTCTAAGAGGAATGCTAGAGACTCACATGTTCCT.........................................................................................................................................................................................................GTGTTGGCACCTCTACCAATTGGATTTGCTGTGTTTTTGGTTCACTTGGCCACAATCCCAATTACTGGCACAGGGATCAACCCTGCTAGAAGTTTTGGAGCTGCTGTCATCTACAATAAACATATAGCATGGAAGGA-CCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTTTTTCTGGAGGACCTTTCACAGGAGCAATTATTGCAGCAATCTACCAACTAATATTGAGGGGATGTAAATGGAGATAAATGGTGCAACATATATTTGCTCTACACTACGTG-TTGTGAGTTAAGAAGTTTAGTTTGTGGAAACAATG-TTGATTTGCATTGGTTTCGATTGCATTAATCAGCTCAAAATTGAATCTTTTGCTAGCA..............................................................................................................................................................................................................................................AAA-AA-AAAAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371460" ref_strand="-" ref_description="SGN-E371460 [TUS-29-N4]">
      <seq>tttcaaaggaaaatatctttaataagaggcttattgtacattgtagttcaatatttgggagccatttgtggtactgctctagttaaggccatttataaatctaagttcgaactctacggtggtggcgttaactcggtcagccccggctatactaggggcgttgcatggtccgcggagatgattggaacatttgttcttgtttacacggttttatcggccactgactctaagaggaatgctagagactcacatgttcctgtgttggcccctctaccaattggatttgctgtgtttttggtccacttggccacaatcccaattactggcacagggatcaaccctgctagaagtcttggagctgctgtcatctacaatcaacaaatagcatgggaggaccttgggatcttttctggaggacctttcacaggagcacttattgcagcaatctaccaaataatactgaggggatgcaaatggagataagtgatgcaacatatatttgctctagaatatgtgtttgtgatttatgaagtttagtttgaggaaacaatgtttgatttgtgtttgttttgattgcattaatcagttcaaaattgaatcttttgcaaacaattttttttacttttataatacgttcagtattaaatcgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="19576" stop="37971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19876" g_stop="20132" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20133" i_stop="20333" i_length="201">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20334" g_stop="20475" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="399" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20476" i_stop="20914" i_length="439">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20915" g_stop="21164" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="649" r_length="250" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21165" i_stop="21310" i_length="146">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.412" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21311" g_stop="21328" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="667" r_length="18" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E371460" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371460" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19876" e_stop="20132"/>
          <exon e_start="20334" e_stop="20475"/>
          <exon e_start="20915" e_stop="21164"/>
          <exon e_start="21311" e_stop="21328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTC-AAGGAAAATATCTTTAATAAGAGGCTTATTGTACATTGTAGTTCAATATTTGGGAGCCATTTGTGGTACTGCTCTAGTTAAGGCCATTTATAAATCTAAGTTCGAACTCTACGGTGGTGGCGTTAACTCGGTCAGCCCCGGCTATACTAGGGGCGTTGCATGGTCCGCGGAGATGATTGGAACATTTGTTCTTGTTTACACGGTTTTATCGGCCACTGACTCTAAGAGGAATGCTAGAGACTCACATGTTCCTGTAAGTATAATAGTTCATTTTGAGTTTAACCTCAATTATTATCGTTTAGTTAACCTATACATGTTTGATTGAACAACGTATCTCGATTAATCTTATGTTTGTATGTTATTAAATACTGACAAGATTAGAATAGAAATTTTCTGATTCAAATTCCGTAATCTGTTTGGTCAAACTTCTAAAATGTATATTATGTTATTGTAGGTGTTGGCCCCTCTACCAATTGGATTTGCTGTGTTTTTGGTCCACTTGGCCACAATCCCAATTACTGGCACAGGGATCAACCCTGCTAGAAGTCTTGGAGCTGCTGTCATCTACAATCAACAAATAGCATGGGAGGACCCTTGTAAGAATACACCCCCCCCCCCCCTTCTTTGATTTAGTAATAACAACGTAATGTGTGATGTGTGAGTCAGACTTATATTTTGAGCTTTAAAAGTTATGTGGAATCAGAATATGAACTTTATATGATATCGAATTAATGTACAAGGAATAACTAAGTTTATCGTAAATTTGAAATCATATTTGAAAGTCGCACGTCGAAAATAAAGTGTTACTGAATAAGGTGATTCTATATTCAGAGTTCGAAGACAATATTCTAATTAAAGACGAATCAATACTTAACATTCTATCTAGCCCTTATTAATTAATTGACTCTTCAATATAGATATCAGATAATTTAGTCAGGTATATAGCTTAAATATCAAATACTTTTTATACATAAATATTACTATCATATTGCAAATATTTTTTTATTTTTTAATATTTGATATTTTTTTTTACAGGGGATCTTTTCTGGAGGACCTTTCACAGGAGCACTTATTGCAGCAATCTACCAACTAATACTGAGGGGATGCAAATGGAGATAAGTGATGCAACATATATTTGCTCTAGAATATGTGTTTGTGATTTATGAAGTTTAGTTTGAGGAAACAATGTTTGATTTGTGTTTGTTTTGATTGCATTAATCAGTTCAAAATTGAATCTTTTGCAAACAATTTTTTTTACTTTTATAATACGTTCAGTATTAAATCGATGAGTTGAGCTAAATTTAGATAAATTAAAATAGTTGAATCAATAAATAGATGAACTGATATGAAATGAACCAAGTCAAAATGAGTTAAATAATGTTATTTTTCTTGACTTTTTTTTTGCTCTTCATATTCCTTTCTTTACTTTAGATAAAGCGATAAAAGAAA</genome_strand>
        <mrna_strand>TTTCAAAGGAAAATATCTTTAATAAGAGGCTTATTGTACATTGTAGTTCAATATTTGGGAGCCATTTGTGGTACTGCTCTAGTTAAGGCCATTTATAAATCTAAGTTCGAACTCTACGGTGGTGGCGTTAACTCGGTCAGCCCCGGCTATACTAGGGGCGTTGCATGGTCCGCGGAGATGATTGGAACATTTGTTCTTGTTTACACGGTTTTATCGGCCACTGACTCTAAGAGGAATGCTAGAGACTCACATGTTCCT.........................................................................................................................................................................................................GTGTTGGCCCCTCTACCAATTGGATTTGCTGTGTTTTTGGTCCACTTGGCCACAATCCCAATTACTGGCACAGGGATCAACCCTGCTAGAAGTCTTGGAGCTGCTGTCATCTACAATCAACAAATAGCATGGGAGGA-CCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCTTTTCTGGAGGACCTTTCACAGGAGCACTTATTGCAGCAATCTACCAAATAATACTGAGGGGATGCAAATGGAGATAAGTGATGCAACATATATTTGCTCTAGAATATGTGTTTGTGATTTATGAAGTTTAGTTTGAGGAAACAATGTTTGATTTGTGTTTGTTTTGATTGCATTAATCAGTTCAAAATTGAATCTTTTGCAAACAATTTTTTTTACTTTTATAATACGTTCAGTATTAAATCG..................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280457" ref_strand="-" ref_description="SGN-E280457 [cLER-1-P4]">
      <seq>gactcacatgttcctgtgttggcccctctaccaattggatttgctgtgtttttggtccacttggccacaatcccaattactggcacagggatcaaccctgctagaagtcttggagctgctgtcatctacaatcaacaaatagcatgggaggaccttgggatcttttctggaggacctttcacaggagcacttattgcagcaatctaccaactaatactgaggggatgcaaatggagataagtgatgcaacatatatttgctctagaatatgtgtttgtgatttatgaagtttagtttgaggaaacaatgtttgatttgtgtttgttttgattgcattaatcagttcaaaattgaatcttttgcaaacaattttttttacttttataatacgttcagtattaaatcgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="20034" stop="37971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20118" g_stop="20132" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20133" i_stop="20333" i_length="201">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20334" g_stop="20475" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="156" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20476" i_stop="20914" i_length="439">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20915" g_stop="21164" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="406" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21165" i_stop="21310" i_length="146">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.412" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21311" g_stop="21328" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="424" r_length="18" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E280457" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280457" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20118" e_stop="20132"/>
          <exon e_start="20334" e_stop="20475"/>
          <exon e_start="20915" e_stop="21164"/>
          <exon e_start="21311" e_stop="21328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCACATGTTCCTGTAAGTATAATAGTTCATTTTGAGTTTAACCTCAATTATTATCGTTTAGTTAACCTATACATGTTTGATTGAACAACGTATCTCGATTAATCTTATGTTTGTATGTTATTAAATACTGACAAGATTAGAATAGAAATTTTCTGATTCAAATTCCGTAATCTGTTTGGTCAAACTTCTAAAATGTATATTATGTTATTGTAGGTGTTGGCCCCTCTACCAATTGGATTTGCTGTGTTTTTGGTCCACTTGGCCACAATCCCAATTACTGGCACAGGGATCAACCCTGCTAGAAGTCTTGGAGCTGCTGTCATCTACAATCAACAAATAGCATGGGAGGACCCTTGTAAGAATACACCCCCCCCCCCCCTTCTTTGATTTAGTAATAACAACGTAATGTGTGATGTGTGAGTCAGACTTATATTTTGAGCTTTAAAAGTTATGTGGAATCAGAATATGAACTTTATATGATATCGAATTAATGTACAAGGAATAACTAAGTTTATCGTAAATTTGAAATCATATTTGAAAGTCGCACGTCGAAAATAAAGTGTTACTGAATAAGGTGATTCTATATTCAGAGTTCGAAGACAATATTCTAATTAAAGACGAATCAATACTTAACATTCTATCTAGCCCTTATTAATTAATTGACTCTTCAATATAGATATCAGATAATTTAGTCAGGTATATAGCTTAAATATCAAATACTTTTTATACATAAATATTACTATCATATTGCAAATATTTTTTTATTTTTTAATATTTGATATTTTTTTTTACAGGGGATCTTTTCTGGAGGACCTTTCACAGGAGCACTTATTGCAGCAATCTACCAACTAATACTGAGGGGATGCAAATGGAGATAAGTGATGCAACATATATTTGCTCTAGAATATGTGTTTGTGATTTATGAAGTTTAGTTTGAGGAAACAATGTTTGATTTGTGTTTGTTTTGATTGCATTAATCAGTTCAAAATTGAATCTTTTGCAAACAATTTTTTTTACTTTTATAATACGTTCAGTATTAAATCGATGAGTTGAGCTAAATTTAGATAAATTAAAATAGTTGAATCAATAAATAGATGAACTGATATGAAATGAACCAAGTCAAAATGAGTTAAATAATGTTATTTTTCTTGACTTTTTTTTTGCTCTTCATATTCCTTTCTTTACTTTAGATAAAGCGATAAAAGAAA</genome_strand>
        <mrna_strand>GACTCACATGTTCCT.........................................................................................................................................................................................................GTGTTGGCCCCTCTACCAATTGGATTTGCTGTGTTTTTGGTCCACTTGGCCACAATCCCAATTACTGGCACAGGGATCAACCCTGCTAGAAGTCTTGGAGCTGCTGTCATCTACAATCAACAAATAGCATGGGAGGA-CCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCTTTTCTGGAGGACCTTTCACAGGAGCACTTATTGCAGCAATCTACCAACTAATACTGAGGGGATGCAAATGGAGATAAGTGATGCAACATATATTTGCTCTAGAATATGTGTTTGTGATTTATGAAGTTTAGTTTGAGGAAACAATGTTTGATTTGTGTTTGTTTTGATTGCATTAATCAGTTCAAAATTGAATCTTTTGCAAACAATTTTTTTTACTTTTATAATACGTTCAGTATTAAATCG..................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239087" ref_strand="+" ref_description="SGN-E239087 [cLEL-9-M17](-)">
      <seq>tatgagccattaatccatcggagaatccatgaccttgatgatcaatcgcacaaacgataaatccgtttttcgcgatgtgaacagctgtgagttgaacaaaccagctgattctccggtgaatccatggacgacacaaacgacgccgatgattttcgtcggaggaagtggggaccaccattgagtgaaaagctttaagcctcgtgaatttgtaatgaattcggagttgtgagttactgagtggtgagagtagaactcggattgactcagtgtgccgaacggactcaactcgttcgcttctgctactggatgcttcatttttgttttctcacggcggtgctgctataatgcgccgcggggggataggataggatataaccgaaatagggaacatgcaaacaacaagataacaaagaggattgggaaaaaatagtgtgattcgtcgtgtattgaatttatttttgttgttaaaaataaaataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="22817" stop="21733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22517" g_stop="22034" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E239087" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22517" e_stop="22034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAGCAATTAATCCATCGGAGAATCCATGACCTTGATGATCAATCGCACAAACGATAAATCCGTTTTTCGCGATGTGAACAGCTGTGAGTTGAACAAACCAGCTCGATTCTCCGGTGAATCCATGGACGACACAAACGACGCCGATGATTTTCGTCGGAGGAAGTGGGGACCACCATTGAGTGAAAAGCTTTAAGCCTCGTGAATTTGTAATGAATTCGGAGTTGTGAGTTACTGAGTGGTGAGAGTAGAACTCGGATTGACTCAGTGTGCCGAACGGACTCAACTCGTTCGCTTCTGCTACTGGATGCTTCATTTTTGTTTTCTCACGGCGGTGCTGCTATAATGCGCCGCGGGGGGATAGGATAGGATATAACCGAAATAGGGAACATGCAAACAACAAGATAACAAAGAGGATTGGGAAAAAATAGTGTGATTCGTCGTGTATTGAATTTATTTTTGTTGTTAAAAATAAAATAAAATA</genome_strand>
        <mrna_strand>TATGAGCCATTAATCCATCGGAGAATCCATGACCTTGATGATCAATCGCACAAACGATAAATCCGTTTTTCGCGATGTGAACAGCTGTGAGTTGAACAAACCAGCT-GATTCTCCGGTGAATCCATGGACGACACAAACGACGCCGATGATTTTCGTCGGAGGAAGTGGGGACCACCATTGAGTGAAAAGCTTTAAGCCTCGTGAATTTGTAATGAATTCGGAGTTGTGAGTTACTGAGTGGTGAGAGTAGAACTCGGATTGACTCAGTGTGCCGAACGGACTCAACTCGTTCGCTTCTGCTACTGGATGCTTCATTTTTGTTTTCTCACGGCGGTGCTGCTATAATGCGCCGCGGGGGGATAGGATAGGATATAACCGAAATAGGGAACATGCAAACAACAAGATAACAAAGAGGATTGGGAAAAAATAGTGTGATTCGTCGTGTATTGAATTTATTTTTGTTGTTAAAAATAAAATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238713" ref_strand="+" ref_description="SGN-E238713 [cLEL-9-M17](-)">
      <seq>gtttttcgcgatgtgaacagctgtgagttgaacaaaccagctcgattctccggtgaatccatggacgacacaaacgacgccgatgattttcgtcggaggaagtggggaccaccattgagtgaaaagctttaagcctcgtgaatttgtaatgaattcggagttgtgagttactgagtggtgagagtagaactcggattgactcagtgtgccgaacggactcaactcgttcgcttctgctactggatgcttcatttttgttttctcacggcggtgctgctataatgcgccgcggggggataggataggatataaccgaaatagggaacatgcaaacaacaagataacaaagaggattgggaaaaaatagtgtgattcgtcgtgtattgaatttatttttgttgttaaaaataaaataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="22753" stop="21733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22453" g_stop="22034" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E238713" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22453" e_stop="22034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTCGCGATGTGAACAGCTGTGAGTTGAACAAACCAGCTCGATTCTCCGGTGAATCCATGGACGACACAAACGACGCCGATGATTTTCGTCGGAGGAAGTGGGGACCACCATTGAGTGAAAAGCTTTAAGCCTCGTGAATTTGTAATGAATTCGGAGTTGTGAGTTACTGAGTGGTGAGAGTAGAACTCGGATTGACTCAGTGTGCCGAACGGACTCAACTCGTTCGCTTCTGCTACTGGATGCTTCATTTTTGTTTTCTCACGGCGGTGCTGCTATAATGCGCCGCGGGGGGATAGGATAGGATATAACCGAAATAGGGAACATGCAAACAACAAGATAACAAAGAGGATTGGGAAAAAATAGTGTGATTCGTCGTGTATTGAATTTATTTTTGTTGTTAAAAATAAAATAAAATA</genome_strand>
        <mrna_strand>GTTTTTCGCGATGTGAACAGCTGTGAGTTGAACAAACCAGCTCGATTCTCCGGTGAATCCATGGACGACACAAACGACGCCGATGATTTTCGTCGGAGGAAGTGGGGACCACCATTGAGTGAAAAGCTTTAAGCCTCGTGAATTTGTAATGAATTCGGAGTTGTGAGTTACTGAGTGGTGAGAGTAGAACTCGGATTGACTCAGTGTGCCGAACGGACTCAACTCGTTCGCTTCTGCTACTGGATGCTTCATTTTTGTTTTCTCACGGCGGTGCTGCTATAATGCGCCGCGGGGGGATAGGATAGGATATAACCGAAATAGGGAACATGCAAACAACAAGATAACAAAGAGGATTGGGAAAAAATAGTGTGATTCGTCGTGTATTGAATTTATTTTTGTTGTTAAAAATAAAATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619005" ref_strand="+" ref_description="SGN-E619005 [69690]">
      <seq>ccctatttcggttatatcatatcctatccccccgcggcgcattatagcaacaccgccgtgagaaaaaaaatgaagcatccagttgcagaagcgaacgagttgagtccgttcggctcactgagtcaatcggagttctactctcaccactcagtaactcacaactccgaattcattacaaattcacgaggcttaaagcttttcacgcaatggtggtccccacttcctcctgcgaaaatcatcggcgtcgtttgtgtcgtccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgccaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattggcttcttcgattcctttagggatctccatgttccgctgtctctgccgtcgtttctctatgctgaatccctcggcggtgctatcgcacttctaatcactctccgggaaggggattctactccccgccggccgtttgacggcgtcgttttgaatggagctatgtatgggattagcaataagttcaaaccaccatggcctttggaacatctacttggtatcgccgccgttttgattccgacttggcccgtggttcccactcgcggctcgttgccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="21831" stop="23127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22131" g_stop="22827" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E619005" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22131" e_stop="22827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTATTTCGGTTATATCCTATCCTATCCCCCCGCGGCGCATTATAGCAGCACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTGATTCCGACTTGGCCCGTGGTCCCCACTCGCGGCTCGTTGCCTTT</genome_strand>
        <mrna_strand>CCCTATTTCGGTTATATCATATCCTATCCCCCCGCGGCGCATTATAGCAACACCGCCGTGAG-AAA-AAAAATGAAGCATCCAGTTGCAGAAGCGAACGAGTTGAGTCCGTTCGGCTCACTGAGTCAATCGGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACGCAATGGTGGTCCCCACTTCCTCCTGCGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCCAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTGGCTTCTTCGATTCCTTTAGGGATCTCCATGTTCCGCTGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCACTTCTAATCACTCTCCGGGAAGGGGATTCTACTCCCCGCCGGCCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCACCATGGCCTTTGGAACATCTACTTGGTATCGCCGCCGTTTTGATTCCGACTTGGCCCGTGGTTCCCACTCGCGGCTCGTTGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470487" ref_strand="+" ref_description="SGN-E470487 [cSTB-18-M12]">
      <seq>cgaggttcggttatatcatatcctatccccccgcggcgcattatagcaacaccgccgtgagaaaaaaaatgaagcatccagttgcagaagcgaacgagttgagtccgttcggctcactgagtcaatcggagttctactctcaccactcagtaactcacaactccgaattcattacaaattcacgaggcttaaagcttttcacgcaatggtggtccccacttcctcctgcgaaaatcatcggcgtcgtttgtgtcgtccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgccaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattggcttcttcgattcctttagggatctccatgttccgctgtctctgccgtcgtttctctatgctgaatccctcggcggtgctatcgcacttctaatcactctccgggaaggggattctactccccgccggccgtttgacggcgtcgttttgaatggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="21837" stop="23010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22132" g_stop="22710" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E470487" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22132" e_stop="22710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATTTCGGTTATATCCTATCCTATCCCCCCGCGGCGCATTATAGCAGCACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGC</genome_strand>
        <mrna_strand>CGAGGTTCGGTTATATCATATCCTATCCCCCCGCGGCGCATTATAGCAACACCGCCGTGAG-AAA-AAAAATGAAGCATCCAGTTGCAGAAGCGAACGAGTTGAGTCCGTTCGGCTCACTGAGTCAATCGGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACGCAATGGTGGTCCCCACTTCCTCCTGCGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCCAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTGGCTTCTTCGATTCCTTTAGGGATCTCCATGTTCCGCTGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCACTTCTAATCACTCTCCGGGAAGGGGATTCTACTCCCCGCCGGCCGTTTGACGGCGTCGTTTTGAATGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412245" ref_strand="+" ref_description="SGN-E412245 [STM-16-A1]">
      <seq>ttcggttatatcatatcctatccccccgcggcgcattatagcaacaccgccgtgagaaaaaaaatgaagcatccagttgcagaagcgaacgagttgagtccgttcggctcactgagtcaatcggagttctactctcaccactcagtaactcacaactccgaattcattacaaattcacgaggcttaaagcttttcacgcaatggtggtccccacttcctcctgcgaaaatcatcggcgtcgtttgtgtcgtccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgccaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattggcttcttcgattcctttagggatctccatgttccgctgtctctgccgtcgtttctctatgctgaatccctcggcggtgctatcgcacttctaatcactctccgggaaggggattctactccccgccggccgtttgacggcgtcgttttgaatggagctatgtatgggattagcaataagttcaaaccaccatggcctttggaacatctacttggtatcgccgccgttttgattccgacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="21837" stop="23094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22137" g_stop="22794" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E412245" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22137" e_stop="22794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGTTATATCCTATCCTATCCCCCCGCGGCGCATTATAGCAGCACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTGATTCCGACTTG</genome_strand>
        <mrna_strand>TTCGGTTATATCATATCCTATCCCCCCGCGGCGCATTATAGCAACACCGCCGTGAG-AAA-AAAAATGAAGCATCCAGTTGCAGAAGCGAACGAGTTGAGTCCGTTCGGCTCACTGAGTCAATCGGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACGCAATGGTGGTCCCCACTTCCTCCTGCGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCCAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTGGCTTCTTCGATTCCTTTAGGGATCTCCATGTTCCGCTGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCACTTCTAATCACTCTCCGGGAAGGGGATTCTACTCCCCGCCGGCCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCACCATGGCCTTTGGAACATCTACTTGGTATCGCCGCCGTTTTGATTCCGACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474993" ref_strand="+" ref_description="SGN-E474993 [cSTB-38-L19]">
      <seq>ttcggttatatcatatcctatccccccgcggcgcattatagcaaccaccgccgtgagaaaaaaaatgaagcatccagttgcagaagcgaacgagttgagtccgttcggctcactgagtcaatcggagttctactctcaccactcagtaactcacaactccgaattcattacaaattcacgaggcttaaagcttttcacgcaatggtggtccccacttcctcctgcgaaaatcatcggcgtcgtttgtgtcgtccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgccaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattggcttcttcgattcctttagggatctccatgttccgctgtctctgccgtcgnttctctatgctgaatccctcggcggtgctatcgcacttctaatcactctccgggaaggggattctactccccgccggccgtttgacggcgtcgttttgaatggagctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="21837" stop="23014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22137" g_stop="22714" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E474993" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22137" e_stop="22714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGTTATATCCTATCCTATCCCCCCGCGGCGCATTATAGC-AGCACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATG</genome_strand>
        <mrna_strand>TTCGGTTATATCATATCCTATCCCCCCGCGGCGCATTATAGCAACCACCGCCGTGAG-AAA-AAAAATGAAGCATCCAGTTGCAGAAGCGAACGAGTTGAGTCCGTTCGGCTCACTGAGTCAATCGGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACGCAATGGTGGTCCCCACTTCCTCCTGCGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCCAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTGGCTTCTTCGATTCCTTTAGGGATCTCCATGTTCCGCTGTCTCTGCCGTCGNTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCACTTCTAATCACTCTCCGGGAAGGGGATTCTACTCCCCGCCGGCCGTTTGACGGCGTCGTTTTGAATGGAGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470463" ref_strand="+" ref_description="SGN-E470463 [cSTB-18-G22]">
      <seq>ttcggctctattttatgctaccctcccgcggcgcattataacagcaccgccgggagaagaaaaatgaatcttccggttgccgaagcgaacgagttgagtccgttcggctcactgagtcaatcggagttctactctcaccactcagtaactcacaactccgaattcattacaaattcacaaggcttaaagctttccacgcaatggtggtccccacttcctcctgcgaaaatcatcggcgtcgtttgtgtcgaccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgccaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattggcttcttcgattcctttagggatctccatgttccgctgtctctgccgtcgtttctctatgctgaatccctcggcggtgctatcgcaccttctaatcactctccgggaaggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="21837" stop="22966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22137" g_stop="22666" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E470463" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22137" e_stop="22666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGTTATATCCTATCCTATCCCCCCGCGGCGCATTATAGCAGCACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGC-GCTTCTAATCACTCTCCGGGAAGGCGAT</genome_strand>
        <mrna_strand>TTCGGCTCTATTTTATGCTACCCTCCCGCGGCGCATTATAACAGCACCGCCG-G-GAGAAGAAAAATGAATCTTCCGGTTGCCGAAGCGAACGAGTTGAGTCCGTTCGGCTCACTGAGTCAATCGGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACAAGGCTTAAAGCTTTCCACGCAATGGTGGTCCCCACTTCCTCCTGCGAAAATCATCGGCGTCGTTTGTGTCGACCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCCAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTGGCTTCTTCGATTCCTTTAGGGATCTCCATGTTCCGCTGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCACCTTCTAATCACTCTCCGGGAAGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391986" ref_strand="+" ref_description="SGN-E391986 [TUS-34-A19]">
      <seq>cgcattatagcagcaccgccgtgagaaaacaaaaatgaagcatccagtagcagaagcgaacgagttgagtccgttcggcacactgagtcaatccgagttctactctcaccactcagtaactcacaactccgaattcattacaaattcacgaggcttaaagcttttcactcaatggtggtccccacttcctccgacgaaaatcatcggcgtcgtttgtgtcgtccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgcgaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattagtttcttcgattcctttcgggatctccatgttccgccgtctctgccgtcgtttctctatgctgaatccctcggcggtgctatcgcgcttctaatcactctccgggaaggcgattctgctccccgccggtcgtttgacggcgtcgttttgaatggagctatgtatgggattagcaataagttcaaaccgccgtggcctctagaacatctacttggtatcgctgccgttttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="21868" stop="23086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22168" g_stop="22786" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E391986" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22168" e_stop="22786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATTATAGCAGCACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTGATT</genome_strand>
        <mrna_strand>CGCATTATAGCAGCACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392187" ref_strand="+" ref_description="SGN-E392187 [TUS-34-M9]">
      <seq>cgcattatagcagcaccgccgtgagaaaacaaaaatgaagcatccagtagcagaagcgaacgagttgagtccgttcggcacactgagtcaatccgagttctactctcaccactcagtaactcacaactccgaattcattacaaattcacgaggcttaaagcttttcactcaatggtggtccccacttcctccgacgaaaatcatcggcgtcgtttgtgtcgtccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgcgaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattagtttcttcgattcctttcgggatctccatgttccgccgtctctgccgtcgtttctctatgctgaatccctcggcggtgctatcgcgcttctaatcactctccgggaaggcgattctgctccccgccggtcgtttgacggcgtcgttttgaatggagctatgtatgggattagcaataagttcaaaccgccgtggcctctagaacatctacttggtatcgctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="21868" stop="23077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22168" g_stop="22777" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E392187" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22168" e_stop="22777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATTATAGCAGCACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCC</genome_strand>
        <mrna_strand>CGCATTATAGCAGCACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392156" ref_strand="+" ref_description="SGN-E392156 [TUS-34-G9]">
      <seq>cgcattatagcagcaccgccgtgagaaaacaaaaatgaagcatccagtagcagaagcgaacgagttgagtccgttcggcacactgagtcaatccgagttctactctcaccactcagtaactcacaactccgaattcattacaaattcacgaggcttaaagcttttcactcaatggtggtccccacttcctccgacgaaaatcatcggcgtcgtttgtgtcgtccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgcgaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattagtttcttcgattcctttcgggatctccatgttccgccgtctctgccgtcgtttctctatgctgaatccctcggcggtgctatcgcgcttctaatccctctccggaaaggcgattctgctccccgccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="21868" stop="22980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22168" g_stop="22680" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E392156" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22168" e_stop="22680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATTATAGCAGCACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCG</genome_strand>
        <mrna_strand>CGCATTATAGCAGCACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCCCTCTCCGGAAAGGCGATTCTGCTCCCCGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391993" ref_strand="+" ref_description="SGN-E391993 [TUS-34-C9]">
      <seq>cgcattatagcagcaccgccgtgagaaaacaaaaatgaagcatccagtagcagaagcgaacgagttgagtccgttcggcacactgagtcaatccgagttctactctcaccactcagtaactcacaactccgaattcattacaaattcacgaggcttaaagcttttcactcaatggtggtccccacttcctccgacgaaaatcatcggcgtcgtttgtgtcgtccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgcgaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattagtttcgtccattcctttcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="21868" stop="22873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22168" g_stop="22573" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E391993" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22168" e_stop="22573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATTATAGCAGCACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGG</genome_strand>
        <mrna_strand>CGCATTATAGCAGCACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCGTCCATTCCTTTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392169" ref_strand="+" ref_description="SGN-E392169 [TUS-34-I9]">
      <seq>cgcattatagcagcaccgccgtgagaaaacaaaaatgaagcatccagtagcagaagcgaacgagttgagtccgttcggcacactgagtcaatccgagttctactctcaccactcagtaactcacaactccgaattcattacaaattcacgaggcttaaagcttttcactcaatggtggtccccacttcctccgacgaaaatcatcggcgtcgtttgtgtcgtccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgcgaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattagtttcttcgattcctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="21868" stop="22871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22168" g_stop="22571" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E392169" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22168" e_stop="22571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATTATAGCAGCACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTC</genome_strand>
        <mrna_strand>CGCATTATAGCAGCACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396099" ref_strand="+" ref_description="SGN-E396099 [TUS-19-G9]">
      <seq>gctttttagcagcaccgccgtgagaaaacaaaaatgaagcatccagtagcagaagcgaacgagttgagtccgttcggttcactgagtcaatccgagttctactctcaccactcagtaactcacaactccgaattcattacaaattcacgaggcttaaagcttttcactcaatggtggtccccacttcctccgacgaaaatcatcggcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="21869" stop="22678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22169" g_stop="22378" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E396099" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22169" e_stop="22378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTATAGCAGCACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTC</genome_strand>
        <mrna_strand>GCTTTTTAGCAGCACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGTTCACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482372" ref_strand="+" ref_description="SGN-E482372 [cSTD-22-A7]">
      <seq>gcagcaccgccgtgagaaaaaaaaatgaagcatccagttgcagaagcgaacgagtttagtccgttcggctcactgagtcaatccgagttctactctcaccactcagtaactcataactccgaattcattacaaattcacgaggcttaaagcttttcacgcaatggtggtccccacttcccccggcgaaaatcatcggcgtcgtttgtgtcgtccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgcgaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattagcttcttcgattcctttagggatctccatgtttcgccgtctctgccgtcgtttctctatgctgaatccctcggcggtgctatcgcgcttctaatcactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="21877" stop="22953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22177" g_stop="22653" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E482372" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22177" e_stop="22653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCT</genome_strand>
        <mrna_strand>GCAGCACCGCCGTGAGAAAA-AAAAATGAAGCATCCAGTTGCAGAAGCGAACGAGTTTAGTCCGTTCGGCTCACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCATAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACGCAATGGTGGTCCCCACTTCCCCCGGCGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGCTTCTTCGATTCCTTTAGGGATCTCCATGTTTCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247394" ref_strand="+" ref_description="SGN-E247394 [cLEF-46-F17]">
      <seq>accgccgtgagaaaacaaaaatgaagcatccagtagcagaagcgaacgagttgagtccgttcggcacactgagtcaatccgagttctactctcaccactcagtaactcacaactccgaattcattacaaattcacgaggcttaaagcttttcactcaatggtggtccccacttcctccgacgaaaatcatcggcgtcgtttgtgtcgtccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgcgaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattagtttcttcgattcctttcgggatctccatgttccgccgtctctgccgtcgtttctctatgctgaatccctcggcggtgctatcgcgcttctaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="21882" stop="22950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22182" g_stop="22650" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E247394" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22182" e_stop="22650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCAC</genome_strand>
        <mrna_strand>ACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721843" ref_strand="+" ref_description="SGN-E721843 [FC15BH04]">
      <seq>aatcggccgaattggccgtgagaaaacaaaaatgaagcatccagtagcagaagcgaacgagttgagtccgttcggcacactgagtcaatccgagttctactctcaccactcagtaactcacaactccgaattcattacaaattcacgaggcttaaagcttttcactcaatggtggtccccacttcctccgacgaaaatcatcggcgtcgtttgtgtcgtccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgcgaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattagtttcttcgattcctttcgggatctccatgttccgccgtctctgccgtcgtttctctatgctgaatccctcggcggtgctatcgcgcttctaatcactctccgggaaggcgattctgctccccgccggtcgtttgacggcgtcgttttgaatggagctatgtatgggattagcaataagttcaaaccgccgtggcctctagaacatctacttggtatcgctgccgttttgattccgacttggcccgtggtccccactcgcggctcgttgcctttggttgcattcaaggaggagttgaagaggaaattggcaatagcaagtccaaggagaccacttataaaaccacgccccgcgacggcgcgtgagttaatgagagtatgtagggagctgcaagggagattcgaagaagtgaaagtaccatttctgatcgtccacggcagcgatgatgtcatctgcgatcccgcgtgcgcggaggagctatatcgccgatcgacaagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="21885" stop="23847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22184" g_stop="22840" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="670" r_length="657" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22841" i_stop="23336" i_length="496">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.569" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23337" g_stop="23548" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="882" r_length="212" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E721843" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22184" e_stop="22840"/>
          <exon e_start="23337" e_stop="23548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTGATTCCGACTTGGCCCGTGGTCCCCACTCGCGGCTCGTTGCCTTTGGTTGCATTCAAGGTATGTAATTGATAATGAAAATATTTGTTTCGATTTCAATATAATTGAGCTTTTAGTTATTATATTTAAGATTTTTATTATTTAACTCATTATATTTAATAATCATATGTTTATATTTATGATTTATTTATTAAATTTTCATATATAAATTTATGTCCTTGTAGAAACTATTAAGTTCAAATGAATTTAATATCAAAAGATGACTATAATGAATTTAAATAAGTCGTCAATTCAATTAAGTTTAGTATAAAGGCTAGATTCGTTTTCAATTAAATTTTAAGTTTAATATTTATACATATATAAAAATGCAAATTGTAGAAACAATCTCTTGTAGAAATATAAAATAATCTATTTATATTTCATTTTCGAATTCAAATCTCGTGAGTAGCGAAAAACTCTAGTACACCGAGCTATCTTTTCTTAAAATACAAAACTGGGTTACTGAATTTGTCAATTTACCATTTGAGCATTCTCTTTTTTTTGGTAATTCACGAAGGAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAA</genome_strand>
        <mrna_strand>GGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTGATTCCGACTTGGCCCGTGGTCCCCACTCGCGGCTCGTTGCCTTTGGTTGCATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGTTGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443045" ref_strand="+" ref_description="SGN-E443045 [cSTA-36-C3]">
      <seq>cgccgtgagaaaacaaaaatgaagcatccagttgcagaagcgaacgagtttagtccgttcggctcactgagtcaatccgagttctactctcaccactcagtaactcataactccgaattcattacaaattcacgaggcttaaagcttttcacgcaatggtggtccccacttcccccggcgaaaatcatcggcgtcgtttgtgtcgtccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgcgaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattagcttcttcgattcctttagggatctccatgtttcgccgtctctgccgtcgtttctctatgctgaatccctcggcggtgctatcgcgcttctaatcactctccgggaaggcgattctgctccccgccggccgtttgacggcgtcgttttgaatggagctatgtatgggattagcaataagttcaaaccgccgtggcctttggaacatctacttggtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="21884" stop="23071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22184" g_stop="22771" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E443045" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22184" e_stop="22771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATC</genome_strand>
        <mrna_strand>CGCCGTGAGAAAACAAAAATGAAGCATCCAGTTGCAGAAGCGAACGAGTTTAGTCCGTTCGGCTCACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCATAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACGCAATGGTGGTCCCCACTTCCCCCGGCGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGCTTCTTCGATTCCTTTAGGGATCTCCATGTTTCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGCCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTTTGGAACATCTACTTGGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271786" ref_strand="+" ref_description="SGN-E271786 [cLEM-8-K23]">
      <seq>gaaaacaaaaatgaagcatccaggagcagaagcgaacgagttgagtccgttcggcacactgagtcaatccgagttctactctcaccactcagtaactcacaactccgaattcattacaaattcacgaggcttaaagcttttcactcaatggtggtccccacttcctccgacgaaaatcatcggcgtcgtttgtgtcgtccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgcgaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattagtttcttcgattcctttcgggatctccatgttccgccgtctctgccgtcgtttctctatgctgaatccctcggcggtgctatcgcgcttctaatcactctccgggaaggcgattctgctccccgccggtcgtttgacggcgtcgttttgaatggagctatgtatgggattagcaataagttcaaaccgccgtggcctctagaacatctacttggtatcgctgccgttttgattccgacttggcccgtggtccccactcgcggctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="21892" stop="23119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22192" g_stop="22819" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E271786" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22192" e_stop="22819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTGATTCCGACTTGGCCCGTGGTCCCCACTCGCGGCTCG</genome_strand>
        <mrna_strand>GAAAACAAAAATGAAGCATCCAGGAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTGATTCCGACTTGGCCCGTGGTCCCCACTCGCGGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370265" ref_strand="+" ref_description="SGN-E370265 [TUS-28-O10]">
      <seq>gaaaacaaaaatgaagcatccagtagcagaagcgaacgagttgagtccgttcggcacactgagtcaatccgagttctactctcaccactcagtaactcacaactccgaattcattacaaattcacgaggcttaaagcttttcactcaatggtggtccccacttcctccgacgaaaatcatcggcgtcgtttgtgtcgtccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgcgaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattagtttcttcgattcctttcgggatctccatgttccgccgtctctgccgtcgattctctatgctgaatccctcggcggtgctatcgcgcttctaatcactcttcgggaaggcgattctgctccccgccggtcgtttgacggcgtcgttttgaatggagctatgtatgggattagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="21892" stop="23027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22192" g_stop="22727" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E370265" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22192" e_stop="22727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCA</genome_strand>
        <mrna_strand>GAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGATTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTTCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250321" ref_strand="+" ref_description="SGN-E250321 [cLEG-6-F4]">
      <seq>aaaaatgaagcatccagtagcagaagcgaacgagttgagtccgtgcggcacactgagtcaatccgagttctactctcaccactcagtaactcacaactccgaattcattacaaattcacgaggcttaaagcttttcactcaatggtggtccccacttcctccgacgaaaatcatcggcgtcgtttgtgtcgtccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgcgaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattaagtttttcccttcgattcctttcgggatcttcatgttccgccgtctctgccgtcgtttctctatgctgaatccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="21898" stop="22871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22198" g_stop="22623" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E250321" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22198" e_stop="22623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATT-AG--TTT--CTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCT</genome_strand>
        <mrna_strand>AAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTGCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAAGTTTTTCCCTTCGATTCCTTTCGGGATCTTCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212019" ref_strand="+" ref_description="SGN-E212019 [cLEC-66-B18]">
      <seq>acgagttgagtccgttcggcacactgagtcaatccgagttctactctcaccactcagtaactcacaactccgaattcattacaaattcacgaggcttaaagcttttcactcaatggtggtccccacttcctccgacgaaaatcatcggcgtcgtttgtgtcgtccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgcgaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattagtttcttcgattcctttcgggatctccatgttccgccgtctctgccgtcgtttctctatgctgaatccctcggcggtgctatcgcgcttctaatcactctccgggaaggcgattctgctccccgccggtcgtttgacggcgtcgttttgaatggagctatgtatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="21927" stop="23020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22227" g_stop="22720" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E212019" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22227" e_stop="22720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGG</genome_strand>
        <mrna_strand>ACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258978" ref_strand="+" ref_description="SGN-E258978 [cLEG-41-H12]">
      <seq>ctgcaggtcggcacactgagtcaatccgagttctactctcaccactcagtaactcacaactccgaattcattacaaattcacgaggcttaaagcttttcactcaatggtggtccccacttcctccgacgaaaatcatcggcgtcgtttgtgtcgtccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgcgaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattagtttcttcgattcctttcgggatctccatgttccgccgtctctgccgtcgtttctctatgctgaatccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="21934" stop="22923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22235" g_stop="22623" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E258978" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22235" e_stop="22623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCT</genome_strand>
        <mrna_strand>CTGCAGGTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203011" ref_strand="+" ref_description="SGN-E203011 [cLEB-1-F8]">
      <seq>gcacgagtcaccactcagtaactcacaactccgaattcattacaaattcacgaggcttaaagcttttcactcaatggtggtccccacttcctccgacgaaaatcatcggcgtcgtttgtgtcgtccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgcgaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattagtttcttcgattcctttcgggatctccatgttccgccgtctctgccgtcgtttctctatgctgaatccctcggcggtgctatcgcgcttctaatcactctccgggaaggcgattctgctccccgccggtcgtttgacggcgtcgttttgaatggagctatgtatgggattagcaataagttcaaaccgccgtggcctctagaacatctacttggtatcgctgccgttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="21973" stop="23083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22266" g_stop="22783" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E203011" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22266" e_stop="22783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTG</genome_strand>
        <mrna_strand>GCACGAGTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281304" ref_strand="+" ref_description="SGN-E281304 [cLEL-1-F11](-)">
      <seq>tccatgaccttgatgatcaatcgcacaaacgataaatccgtttttcgcgatgtgaacagctgtgagttgaacaaaccagctcgattctccggtgaatccatggacgacacaaacgacgccgatgattttcgtcggaggaagtggggaccgccattgagtgaaaagctttaagcctcgtgaatttgtaatgaattcggagttgtgagttactgagtggtgactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="22792" stop="21973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22492" g_stop="22266" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E281304" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22492" e_stop="22266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATGACCTTGATGATCAATCGCACAAACGATAAATCCGTTTTTCGCGATGTGAACAGCTGTGAGTTGAACAAACCAGCTCGATTCTCCGGTGAATCCATGGACGACACAAACGACGCCGATGATTTTCGTCGGAGGAAGTGGGGACCACCATTGAGTGAAAAGCTTTAAGCCTCGTGAATTTGTAATGAATTCGGAGTTGTGAGTTACTGAGTGGTGAGAGTAGA</genome_strand>
        <mrna_strand>TCCATGACCTTGATGATCAATCGCACAAACGATAAATCCGTTTTTCGCGATGTGAACAGCTGTGAGTTGAACAAACCAGCTCGATTCTCCGGTGAATCCATGGACGACACAAACGACGCCGATGATTTTCGTCGGAGGAAGTGGGGACCGCCATTGAGTGAAAAGCTTTAAGCCTCGTGAATTTGTAATGAATTCGGAGTTGTGAGTTACTGAGTGGTGACTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391781" ref_strand="+" ref_description="SGN-E391781 [TUS-24-O6]">
      <seq>aagcttttcactcaatggtggtccccacttcctccgacgaaaatcatcggcgtcgtttgtgtcgtccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgcgaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattagtttcttcgattcctttcgggatctccatgttccgccgtctctgccgtcgtttctctatgctgaatccctcggcggtgctatcgcgcttctaatcactctccgggaaggcgaatctgctccccgccggtcgtttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="22025" stop="22989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22325" g_stop="22690" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E391781" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22325" e_stop="22690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGAC</genome_strand>
        <mrna_strand>AAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGAATCTGCTCCCCGCCGGTCGTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328006" ref_strand="+" ref_description="SGN-E328006 [cTOC-22-G11]">
      <seq>ccacttcctccgacgaaaatcatcggcgtcgtttgtgtcgtccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgcgaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattagtttcttcgattcctttcgggatctccatgttccgccgtctctgccgtcgtttctctatgctgaatccctcggcggtgctatcgcgcttctaatcactctccgggaaggcgattctgctccccgccggtcgtttgacggcgtcgttttgaatggagctatgtatgggattagcaataagttcaaaccgccgtggcctctagaacatctacttggtatcgctgccgttttgattccgacttggcccgtggtccccactcgcggctcgttgcctttggttgcattcaaggaggagtggaagaggaaattggcaatagcaagtccaaggagaccacttataaaaccacgccccgcgacggcgcgtgagttaatgagagtatgtagggagctgcaagggagattcgaagaagtgaaagtaccatttctgatcgtccacggcagcgatgatgtcatctgcgatcccgcgtgcgcggaggagctatatcgccgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="22049" stop="23839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22349" g_stop="22840" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22841" i_stop="23336" i_length="496">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.569" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23337" g_stop="23539" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="695" r_length="203" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E328006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22349" e_stop="22840"/>
          <exon e_start="23337" e_stop="23539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTGATTCCGACTTGGCCCGTGGTCCCCACTCGCGGCTCGTTGCCTTTGGTTGCATTCAAGGTATGTAATTGATAATGAAAATATTTGTTTCGATTTCAATATAATTGAGCTTTTAGTTATTATATTTAAGATTTTTATTATTTAACTCATTATATTTAATAATCATATGTTTATATTTATGATTTATTTATTAAATTTTCATATATAAATTTATGTCCTTGTAGAAACTATTAAGTTCAAATGAATTTAATATCAAAAGATGACTATAATGAATTTAAATAAGTCGTCAATTCAATTAAGTTTAGTATAAAGGCTAGATTCGTTTTCAATTAAATTTTAAGTTTAATATTTATACATATATAAAAATGCAAATTGTAGAAACAATCTCTTGTAGAAATATAAAATAATCTATTTATATTTCATTTTCGAATTCAAATCTCGTGAGTAGCGAAAAACTCTAGTACACCGAGCTATCTTTTCTTAAAATACAAAACTGGGTTACTGAATTTGTCAATTTACCATTTGAGCATTCTCTTTTTTTTGGTAATTCACGAAGGAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATC</genome_strand>
        <mrna_strand>CCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTGATTCCGACTTGGCCCGTGGTCCCCACTCGCGGCTCGTTGCCTTTGGTTGCATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259532" ref_strand="+" ref_description="SGN-E259532 [cLEG-42-F13]">
      <seq>tccgacgaaaatcatcggcgtcgtttgtgtcgtccatggattcaccggagaatcgagctggtttgttcaactcacagctgttcacatcgcgaaaaacggatttatcgtttgtgcgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattagtttcttcgattcctttcgggatctccatgttccgccgtctctgccgtcgtttctctatgctgaatccctcggcggtgctatcgcgcttctaatcactctccgggaaggcgattctgctccccgccggtcgtttgacggcgtcgttttgaatggagctatgtatgggattagcaataagttcaaaccgccgtggcctctagaacatctacttggtatcgctgccgttttgattccgacttggcccgtggtccccactcgcggctcgttgcctttggttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="22057" stop="23134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22357" g_stop="22834" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E259532" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22357" e_stop="22834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTGATTCCGACTTGGCCCGTGGTCCCCACTCGCGGCTCGTTGCCTTTGGTTGCA</genome_strand>
        <mrna_strand>TCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTGATTCCGACTTGGCCCGTGGTCCCCACTCGCGGCTCGTTGCCTTTGGTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259664" ref_strand="+" ref_description="SGN-E259664 [cLEG-42-I2]">
      <seq>aaaatcatcggcgtcgtttgtgtcgtccatggattcacccggagaatcgagcctggtttgttcaacctcaccagctgttcaccatcgcgaaaaacggatttatcgtttgtgccgattgatcatcaaggtcatggattctccgatggattaattgctcatattcctgatttaaatctcgttgttgatgactgtattagtttcttcgattcctttcgggatctccatgttccgccgtctctgccgtcgtttctctatgctgaatccctcggcggtgcctatcgcgccttctaatcacctctccgggaaggccgattctgctccccgccggtcgtttgaccggcgtcgttttgaatggagcctatgtatgggattagccataagttcaaacccgccgtggcctctagaaccatctaccttggtatcgctgccgttttgattccgaccttggcccgtggtccccactcgcggctcgttgcctttggttgcattcaaggaggagtggaagaggaaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="22064" stop="23658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22364" g_stop="22840" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22841" i_stop="23336" i_length="496">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.569" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23337" g_stop="23358" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="515" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E259664" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22364" e_stop="22840"/>
          <exon e_start="23337" e_stop="23358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCA-CCGGAGAATCGAG-CTGGTTTGTTCAA-CTCA-CAGCTGTTCA-CATCGCGAAAAACGGATTTATCGTTTGTG-CGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTG-CTATCGCG-CTTCTAATCA-CTCTCCGGGAAGG-CGATTCTGCTCCCCGCCGGTCGTTTGA-CGGCGTCGTTTTGAATGGAG-CTATGTATGGGATTAGCAATAAGTTCAAA-CCGCCGTGGCCTCTAGAA-CATCTA-CTTGGTATCGCTGCCGTTTTGATTCCGA-CTTGGCCCGTGGTCCCCACTCGCGGCTCGTTGCCTTTGGTTGCATTCAAGGTATGTAATTGATAATGAAAATATTTGTTTCGATTTCAATATAATTGAGCTTTTAGTTATTATATTTAAGATTTTTATTATTTAACTCATTATATTTAATAATCATATGTTTATATTTATGATTTATTTATTAAATTTTCATATATAAATTTATGTCCTTGTAGAAACTATTAAGTTCAAATGAATTTAATATCAAAAGATGACTATAATGAATTTAAATAAGTCGTCAATTCAATTAAGTTTAGTATAAAGGCTAGATTCGTTTTCAATTAAATTTTAAGTTTAATATTTATACATATATAAAAATGCAAATTGTAGAAACAATCTCTTGTAGAAATATAAAATAATCTATTTATATTTCATTTTCGAATTCAAATCTCGTGAGTAGCGAAAAACTCTAGTACACCGAGCTATCTTTTCTTAAAATACAAAACTGGGTTACTGAATTTGTCAATTTACCATTTGAGCATTCTCTTTTTTTTGGTAATTCACGAAGGAGGAGTGGAAGAGGAAATTGG</genome_strand>
        <mrna_strand>AAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCCGGAGAATCGAGCCTGGTTTGTTCAACCTCACCAGCTGTTCACCATCGCGAAAAACGGATTTATCGTTTGTGCCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCCTATCGCGCCTTCTAATCACCTCTCCGGGAAGGCCGATTCTGCTCCCCGCCGGTCGTTTGACCGGCGTCGTTTTGAATGGAGCCTATGTATGGGATTAGCCATAAGTTCAAACCCGCCGTGGCCTCTAGAACCATCTACCTTGGTATCGCTGCCGTTTTGATTCCGACCTTGGCCCGTGGTCCCCACTCGCGGCTCGTTGCCTTTGGTTGCATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGTGGAAGAGGAAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695884" ref_strand="+" ref_description="SGN-E695884 [LH_Ea07L02](-)">
      <seq>ccccgccggtcgtttgacggcgtcgttttgaatggagctatgtatggaattagcaataagttcaaaccgccgtggcctctggaacatctacttggtatcgctgccgttttgataccgacttggcccgtggttcccactcgcgggtcgttgcctttggttgcattcaaggaggagtggaagaggaaattggcaatagcaagtccaaggagaccacttataaaaccacgcccggcgacggcgcgtgagttaatgagagtatgtagggagctccaagggagattcgaagaagtgaaagtaccatttctgatcgtccacggcagcgatgatgtcatctgcgatcccgcgtgcgcggaggagctatatcgccgatcgacaagcaaggacaagacactgaggatatatccaggtatgtggcaccagctggtcggagaaccggaggagaatgtggagcaagtgttcggagatgtcgttgagtggcttaaaatgagggccgacgtttcaacgggcgacaaggccactgtggacggtggcgcgtgaggagtgggagttggttgggatattctagttggggagtggttaaatatgccagtaaaagttagtgaaagatcagtaaacattgtgatcagtaagttaaagaaccaaaaaataaatttgtaccaggccatttatgtcaaaactttattagccatgtgactatttaaacttgtattaatgcaatatttgtagagttaaataatatatttattattttttgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="22373" stop="24404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22673" g_stop="22840" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22841" i_stop="23336" i_length="496">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.569" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23337" g_stop="23900" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="731" r_length="563" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="756" polyA_stop="771"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E695884" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22673" e_stop="22840"/>
          <exon e_start="23337" e_stop="23900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTGATTCCGACTTGGCCCGTGGTCCCCACTCGCGGCTCGTTGCCTTTGGTTGCATTCAAGGTATGTAATTGATAATGAAAATATTTGTTTCGATTTCAATATAATTGAGCTTTTAGTTATTATATTTAAGATTTTTATTATTTAACTCATTATATTTAATAATCATATGTTTATATTTATGATTTATTTATTAAATTTTCATATATAAATTTATGTCCTTGTAGAAACTATTAAGTTCAAATGAATTTAATATCAAAAGATGACTATAATGAATTTAAATAAGTCGTCAATTCAATTAAGTTTAGTATAAAGGCTAGATTCGTTTTCAATTAAATTTTAAGTTTAATATTTATACATATATAAAAATGCAAATTGTAGAAACAATCTCTTGTAGAAATATAAAATAATCTATTTATATTTCATTTTCGAATTCAAATCTCGTGAGTAGCGAAAAACTCTAGTACACCGAGCTATCTTTTCTTAAAATACAAAACTGGGTTACTGAATTTGTCAATTTACCATTTGAGCATTCTCTTTTTTTTGGTAATTCACGAAGGAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGT-AGGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTA</genome_strand>
        <mrna_strand>CCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGAATTAGCAATAAGTTCAAACCGCCGTGGCCTCTGGAACATCTACTTGGTATCGCTGCCGTTTTGATACCGACTTGGCCCGTGGTTCCCACTCGCGGGTCGTTGCCTTTGGTTGCATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCGGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTCCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAGACACTGAGGATATATCCAGGTATGTGGCACCAGCTGGTCGGAGAACCGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGGGCCGACGTTTCAACGGGCGACAAGGCCACTGTGGACGGTGGCGCGTGAGGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGGAGTGGTT-A-AATATGCCAGTAAAAGTTAGTGAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTAGAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540026" ref_strand="+" ref_description="SGN-E540026 [TUS-60-B12](-)">
      <seq>ttttgaatggagctatgtatgggattagcaataagttcaaaccgccgtggcctctagaacatctacttggtatcgctgccgttttgattccgacttggcccgtggtccccactcgcggctcgttgcctttggttgcattcaaggaggagtggaagaggaaattggcaatagcaagtccaaggagaccacttataaaaccacgccccgcgacggcgcgtgagttaatgagagtatgtagggagctgcaagggagattcgaagaagtgaaagtaccatttctgatcgtccacggcagcgatgatgtcatctgcgatcccgcgtgcgcggaggagctatatcgccgatcgacaagcaaggacaaaacactgaagatatatccaggtatgtggcaccagctggttggagaactggaggagaatgtggagcaagtgttcggagatgtcgttgagtggcttaaaatgagagccgacgtttcaaccggcgacaaggccactgttgacggtggcgcgtaggagtgggagttggttgggatattctagttgggaagtggttaataatatgccagtaaaagtaagttaaagatcagtaaacattgtgatcagtaagttaaagaaccaaaaaataaatttgtaccaggccatttatgtcaaaactttattagccatgtgactatttaaacttgtattaatgcaatatttgttgatttagttatgtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="22398" stop="24216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22698" g_stop="22840" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22841" i_stop="23336" i_length="496">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.569" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23337" g_stop="23918" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="725" r_length="582" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E540026" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22698" e_stop="22840"/>
          <exon e_start="23337" e_stop="23918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTGATTCCGACTTGGCCCGTGGTCCCCACTCGCGGCTCGTTGCCTTTGGTTGCATTCAAGGTATGTAATTGATAATGAAAATATTTGTTTCGATTTCAATATAATTGAGCTTTTAGTTATTATATTTAAGATTTTTATTATTTAACTCATTATATTTAATAATCATATGTTTATATTTATGATTTATTTATTAAATTTTCATATATAAATTTATGTCCTTGTAGAAACTATTAAGTTCAAATGAATTTAATATCAAAAGATGACTATAATGAATTTAAATAAGTCGTCAATTCAATTAAGTTTAGTATAAAGGCTAGATTCGTTTTCAATTAAATTTTAAGTTTAATATTTATACATATATAAAAATGCAAATTGTAGAAACAATCTCTTGTAGAAATATAAAATAATCTATTTATATTTCATTTTCGAATTCAAATCTCGTGAGTAGCGAAAAACTCTAGTACACCGAGCTATCTTTTCTTAAAATACAAAACTGGGTTACTGAATTTGTCAATTTACCATTTGAGCATTCTCTTTTTTTTGGTAATTCACGAAGGAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTAGGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTAGTTATGTTGATATTAATT</genome_strand>
        <mrna_strand>TTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTGATTCCGACTTGGCCCGTGGTCCCCACTCGCGGCTCGTTGCCTTTGGTTGCATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTAGGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTAGTTATGTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392186" ref_strand="+" ref_description="SGN-E392186 [TUS-34-M9](-)">
      <seq>ggattagcaataagttcaaaccgccgtggcctctagaacatttacttggtatcgctgccgttttgattccgacttggcccgtggtccccactcgcggctcgttgcctttggttgcattcaaggaggagtggaagaggaaattggcaatagcaagtccaaggagaccacttataaaaccacgccccgcgacggcgcgtgagttaatgagagtatgtagggagctgcaagggagattcgaagaagtgaaagtaccatttctgatcgtccacggcagcgatgatgtcatttgtgatcccgcgtgcgcggaggagctatatggccgattgacaagcaaggacaaaacactgaagatatatccaggtatgtggcaccaggtggttggagaaatggaggagaatgtggagcaagtgtttggagatgtcgttgagtggcttaaaatgagagcggatgtttcaaccggcgacaaggccactgttgacggtggcgtgtaggagtgggagttggttgggatattttagttgggaagtggttaataatatgccagtaaaagtaagttaaagatcagtaaacattgtgatcagtaagttaaagaaccaaaaaataaatttgtaccaggccatttatgtcaaaactttattagccatgtgactatttaaacttgtattaatgcaatatttggtgattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="22419" stop="37971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22719" g_stop="22840" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22841" i_stop="23336" i_length="496">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.569" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23337" g_stop="23900" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="686" r_length="564" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23901" i_stop="24814" i_length="914">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.571" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24815" g_stop="24828" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="700" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E392186" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22719" e_stop="22840"/>
          <exon e_start="23337" e_stop="23900"/>
          <exon e_start="24815" e_stop="24828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTGATTCCGACTTGGCCCGTGGTCCCCACTCGCGGCTCGTTGCCTTTGGTTGCATTCAAGGTATGTAATTGATAATGAAAATATTTGTTTCGATTTCAATATAATTGAGCTTTTAGTTATTATATTTAAGATTTTTATTATTTAACTCATTATATTTAATAATCATATGTTTATATTTATGATTTATTTATTAAATTTTCATATATAAATTTATGTCCTTGTAGAAACTATTAAGTTCAAATGAATTTAATATCAAAAGATGACTATAATGAATTTAAATAAGTCGTCAATTCAATTAAGTTTAGTATAAAGGCTAGATTCGTTTTCAATTAAATTTTAAGTTTAATATTTATACATATATAAAAATGCAAATTGTAGAAACAATCTCTTGTAGAAATATAAAATAATCTATTTATATTTCATTTTCGAATTCAAATCTCGTGAGTAGCGAAAAACTCTAGTACACCGAGCTATCTTTTCTTAAAATACAAAACTGGGTTACTGAATTTGTCAATTTACCATTTGAGCATTCTCTTTTTTTTGGTAATTCACGAAGGAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTAGGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTAGTTATGTTGATATTAATTTTTTACCAGATATGTATAAATTTCTAACAAAAAATTATTGATCTCAACTGAGACAATTTTATTATAAACTTTTGCATTCTTAGTATAGAAATATTGTAGAGCGCACATTTAGTGTTTAAAAAGCAAAGGTAATTTATTTTGTTAGATATGATTTAAATAATATATTTATAATTCTCTTATAAATAATTTGTGACGATAAAACAAATATGTGAATAATAGATAAAATCAACAATAAATTGCGCATATAAAATTAACTTAAATAATAAATTTATATTAGACATGTATAAATTTCTAACAAAAAATTATTGATCTCAACTGAGACAATTTTATTATAAACTTTTGCATTCTTAGTATAGAAATATTGTAGAGCGCACATTTAGTGTTTAAAAAGCAAAGGTAATTTATTTTGTTAGATATGATTTAAATAATATATTTATAATTCTCTTATAAATAATTTGTGACGATAAAAAAATATGTGAATAATAGATAAAATCAACAATAAATTGCGCATATAAAATTAACTTAAATAATAAATTTATATTCCTCTTATATTAATTTGTGAGGATAAAAAAAATATGTAAATGATTGAAAAATATTATTACTTATGAATATAAAATATAAAATAATTTTGTTTTAATTCTTTTCAAGTATAAAAAACTTAAATTAATCAACTTTTTTTATCATATTAACAACTATAAGGATATTTCACATATTTTGATTAAAAAAAAAGTCTTTACCAGCCCTTATTTATTTGCCAAACATATCAACAATTTTTTTTCAACTGCAAAATAAATTTCAAACACTTTAAAAAGTTAACTTTTTAAAAGTTACACTTTTTAAGTCAATTCAAACGGGGCTCAAAGTATTGTTGCATAATTTTCTTTCTCCTCAATTAGGACAGAGGAGAAAA</genome_strand>
        <mrna_strand>GGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATTTACTTGGTATCGCTGCCGTTTTGATTCCGACTTGGCCCGTGGTCCCCACTCGCGGCTCGTTGCCTTTGGTTGCATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATTTGTGATCCCGCGTGCGCGGAGGAGCTATATGGCCGATTGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGGTGGTTGGAGAAATGGAGGAGAATGTGGAGCAAGTGTTTGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCGGATGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGTGTAGGAGTGGGAGTTGGTTGGGATATTTTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGGTGATTAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393667" ref_strand="+" ref_description="SGN-E393667 [TUS-42-L24]">
      <seq>gttcaaaccgccgtggcctctagaacatctacttggtatcgctgccgttttgattccgacttggcccgtggtccccactcgcggctcgttgcctttggttgcattcaaggaggagtggaagaggaaattggcaatagcaagtccaaggagaccacttataaaaccacgccccgcgacggcgcgtgagttaatgagagtatgtagggagctgcaagggagattcgaagaagtgaaagtaccatttctgatcgtccacggcagcgatgatgtcatctgcgatcccgcgtgcgcggaggagctatatcgccgatcgacaagcaaggacaaaacactgaagatatatccaggtatgtggcaccagctggttggagaactggaggagaatgtggagcaagtgttcggagatgtcgttgagtggcttaaaatgagagccgacgtttcaaccggcgacaaggccactgttgacggtggcgcgtaaggagtgggagttggttgggatattctagttgggaagtggttaataatatgccagtaaaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="22432" stop="24066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22732" g_stop="22840" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22841" i_stop="23336" i_length="496">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.569" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23337" g_stop="23766" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="540" r_length="431" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E393667" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22732" e_stop="22840"/>
          <exon e_start="23337" e_stop="23766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTGATTCCGACTTGGCCCGTGGTCCCCACTCGCGGCTCGTTGCCTTTGGTTGCATTCAAGGTATGTAATTGATAATGAAAATATTTGTTTCGATTTCAATATAATTGAGCTTTTAGTTATTATATTTAAGATTTTTATTATTTAACTCATTATATTTAATAATCATATGTTTATATTTATGATTTATTTATTAAATTTTCATATATAAATTTATGTCCTTGTAGAAACTATTAAGTTCAAATGAATTTAATATCAAAAGATGACTATAATGAATTTAAATAAGTCGTCAATTCAATTAAGTTTAGTATAAAGGCTAGATTCGTTTTCAATTAAATTTTAAGTTTAATATTTATACATATATAAAAATGCAAATTGTAGAAACAATCTCTTGTAGAAATATAAAATAATCTATTTATATTTCATTTTCGAATTCAAATCTCGTGAGTAGCGAAAAACTCTAGTACACCGAGCTATCTTTTCTTAAAATACAAAACTGGGTTACTGAATTTGTCAATTTACCATTTGAGCATTCTCTTTTTTTTGGTAATTCACGAAGGAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGT-AGGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTA</genome_strand>
        <mrna_strand>GTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTGATTCCGACTTGGCCCGTGGTCCCCACTCGCGGCTCGTTGCCTTTGGTTGCATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTAAGGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248301" ref_strand="+" ref_description="SGN-E248301 [cLEG-1-E13]">
      <seq>ttcaaaccgccgtggcctctagaacatctacttggtatcgctgncggttccgtgtccacttggcccgtggtnnccactctcggctcgttgcctttggttgtgttcaaggaggagtggaagaggaaattggcaatagcaagtccaaggagaccacttataaaaccacgccccgcgacggcgcgtgagttaatgagagtatgtagggagctgcaagggagattcgaagaagtgaaagtaccatttctgatcgtccacggcagcgatgatgtcatctgcgatcccgcgtgcgcggaggagctatatcgtcgatcgacaagcaaggacaaaacactgaagatatatccaggtatgtggcaccagctggttggagaactggaggagaatgtggagcaagtgttcggagatgtcgttgagtggcttaaaatgagagccgacgtttcaaccggcgacaaggccactgttgacggtggcgcgtangagtgggagttggttgggatattctagttgggaagtggttaataatatgccagtaaaagtaagttaaagatcagtaaacattgtgatcagtaagttaaagaaccaaaaaataaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="22433" stop="24123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22733" g_stop="22840" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22841" i_stop="23336" i_length="496">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.569" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23337" g_stop="23823" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="595" r_length="487" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E248301" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22733" e_stop="22840"/>
          <exon e_start="23337" e_stop="23823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTGATTCCGACTTGGCCCGTGGTCCCCACTCGCGGCTCGTTGCCTTTGGTTGCATTCAAGGTATGTAATTGATAATGAAAATATTTGTTTCGATTTCAATATAATTGAGCTTTTAGTTATTATATTTAAGATTTTTATTATTTAACTCATTATATTTAATAATCATATGTTTATATTTATGATTTATTTATTAAATTTTCATATATAAATTTATGTCCTTGTAGAAACTATTAAGTTCAAATGAATTTAATATCAAAAGATGACTATAATGAATTTAAATAAGTCGTCAATTCAATTAAGTTTAGTATAAAGGCTAGATTCGTTTTCAATTAAATTTTAAGTTTAATATTTATACATATATAAAAATGCAAATTGTAGAAACAATCTCTTGTAGAAATATAAAATAATCTATTTATATTTCATTTTCGAATTCAAATCTCGTGAGTAGCGAAAAACTCTAGTACACCGAGCTATCTTTTCTTAAAATACAAAACTGGGTTACTGAATTTGTCAATTTACCATTTGAGCATTCTCTTTTTTTTGGTAATTCACGAAGGAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTAGGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTG</genome_strand>
        <mrna_strand>TTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGNCGGTTCCGTGTCCACTTGGCCCGTGGTNNCCACTCTCGGCTCGTTGCCTTTGGTTGTGTTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGTCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTANGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397813" ref_strand="+" ref_description="SGN-E397813 [TUS-34-A19](-)">
      <seq>gccgttttgattccgacttggcccgtggtccccactcgcggctcgttgcctttggttgcattcaaggaggagtggaagaggaaattggcaatagcaagtccaaggagaccacttataaaaccacgccccgcgacggcgcgtgagttaatgagagtatgtagggagctgcaagggagattcgaagaagtgaaagtaccatttttgatcgtccacggcagcgatgatgtcatttgcgatcccgcgtgcgcggaggagctatatcgccgatcgacaagcaaggacaaaacactgaagatatatccaggtatgtggcaccagctggttggagaactggaggagaatgtggagcaagtgtttggagatgtcgttgagtggcttaaaatgagagccgacgtttcaaccggcgacaaggccactgttgacggtggcgcgtaggagtgggagttggttgggatattttagttgggaagtggttaataatatgccagtaaaagtaagttaaagatcagtaaacattgtgatcagtaagttaaagaaccaaaaaataaatttgtaccaggccatttatgtcaaaactttattagccatgtgactatttaaacttgtattaatgcaatatttgttgatttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="22475" stop="47060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22775" g_stop="22840" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22841" i_stop="23336" i_length="496">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.569" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23337" g_stop="23900" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="630" r_length="564" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23901" i_stop="24814" i_length="914">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24815" g_stop="24829" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="645" r_length="15" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E397813" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22775" e_stop="22840"/>
          <exon e_start="23337" e_stop="23900"/>
          <exon e_start="24815" e_stop="24829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTTTTGATTCCGACTTGGCCCGTGGTCCCCACTCGCGGCTCGTTGCCTTTGGTTGCATTCAAGGTATGTAATTGATAATGAAAATATTTGTTTCGATTTCAATATAATTGAGCTTTTAGTTATTATATTTAAGATTTTTATTATTTAACTCATTATATTTAATAATCATATGTTTATATTTATGATTTATTTATTAAATTTTCATATATAAATTTATGTCCTTGTAGAAACTATTAAGTTCAAATGAATTTAATATCAAAAGATGACTATAATGAATTTAAATAAGTCGTCAATTCAATTAAGTTTAGTATAAAGGCTAGATTCGTTTTCAATTAAATTTTAAGTTTAATATTTATACATATATAAAAATGCAAATTGTAGAAACAATCTCTTGTAGAAATATAAAATAATCTATTTATATTTCATTTTCGAATTCAAATCTCGTGAGTAGCGAAAAACTCTAGTACACCGAGCTATCTTTTCTTAAAATACAAAACTGGGTTACTGAATTTGTCAATTTACCATTTGAGCATTCTCTTTTTTTTGGTAATTCACGAAGGAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTAGGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTAGTTATGTTGATATTAATTTTTTACCAGATATGTATAAATTTCTAACAAAAAATTATTGATCTCAACTGAGACAATTTTATTATAAACTTTTGCATTCTTAGTATAGAAATATTGTAGAGCGCACATTTAGTGTTTAAAAAGCAAAGGTAATTTATTTTGTTAGATATGATTTAAATAATATATTTATAATTCTCTTATAAATAATTTGTGACGATAAAACAAATATGTGAATAATAGATAAAATCAACAATAAATTGCGCATATAAAATTAACTTAAATAATAAATTTATATTAGACATGTATAAATTTCTAACAAAAAATTATTGATCTCAACTGAGACAATTTTATTATAAACTTTTGCATTCTTAGTATAGAAATATTGTAGAGCGCACATTTAGTGTTTAAAAAGCAAAGGTAATTTATTTTGTTAGATATGATTTAAATAATATATTTATAATTCTCTTATAAATAATTTGTGACGATAAAAAAATATGTGAATAATAGATAAAATCAACAATAAATTGCGCATATAAAATTAACTTAAATAATAAATTTATATTCCTCTTATATTAATTTGTGAGGATAAAAAAAATATGTAAATGATTGAAAAATATTATTACTTATGAATATAAAATATAAAATAATTTTGTTTTAATTCTTTTCAAGTATAAAAAACTTAAATTAATCAACTTTTTTTATCATATTAACAACTATAAGGATATTTCACATATTTTGATTAAAAAAAAAGTCTTTACCAGCCCTTATTTATTTGCCAAACATATCAACAATTTTTTTTCAACTGCAAAATAAATTTCAAACACTTTAAAAAGTTAACTTTTTAAAAGTTACACTTTTTAAGTCAATTCAAACGGGGCTCAAAGTATTGTTGCATAATTTTCTTTCTCCTCAATTAGGACAGAGGAGAAAAA</genome_strand>
        <mrna_strand>GCCGTTTTGATTCCGACTTGGCCCGTGGTCCCCACTCGCGGCTCGTTGCCTTTGGTTGCATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTTTGATCGTCCACGGCAGCGATGATGTCATTTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTTGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTAGGAGTGGGAGTTGGTTGGGATATTTTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392029" ref_strand="+" ref_description="SGN-E392029 [TUS-24-O6](-)">
      <seq>ccactcgcggctcgttgcctttggttgcattcaaggaggagtggaagaggaaattggcaatagcaagtccaaggagaccacttataaaaccacgccccgcgacggcgcgtgagttaatgagagtatgtagggagctgcaagggagattcgaagaagtgaaagtaccatttttgatcgtccacggcagcgatgatgtcatttgcgatcccgcgtgcgcggaggagctatatcgccgatcgacaagcaaggacaaaacactgaagatatatccaggtatgtggcaccagctggttggagaactggaggagaatgtggagcaagtgttcggagatgtcgttgagtggcttaaaatgagagccgacgtttcaaccggcgacaaggccactgttgacggtggcgcgtaggagtgggagttggttgggatattttagttgggaagtggttaataatatgccagtaaaagtaagttaaagatcagtaaacattgtgatcagtaagttaaagaaccaaaaaataaatttgtaccaggccatttatgtcaaaactttattagccatgtgactatttaaacttgtattaatgcaatatttgttgattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="22506" stop="24200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22806" g_stop="22840" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22841" i_stop="23336" i_length="496">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.569" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23337" g_stop="23900" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="599" r_length="564" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E392029" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22806" e_stop="22840"/>
          <exon e_start="23337" e_stop="23900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTCGCGGCTCGTTGCCTTTGGTTGCATTCAAGGTATGTAATTGATAATGAAAATATTTGTTTCGATTTCAATATAATTGAGCTTTTAGTTATTATATTTAAGATTTTTATTATTTAACTCATTATATTTAATAATCATATGTTTATATTTATGATTTATTTATTAAATTTTCATATATAAATTTATGTCCTTGTAGAAACTATTAAGTTCAAATGAATTTAATATCAAAAGATGACTATAATGAATTTAAATAAGTCGTCAATTCAATTAAGTTTAGTATAAAGGCTAGATTCGTTTTCAATTAAATTTTAAGTTTAATATTTATACATATATAAAAATGCAAATTGTAGAAACAATCTCTTGTAGAAATATAAAATAATCTATTTATATTTCATTTTCGAATTCAAATCTCGTGAGTAGCGAAAAACTCTAGTACACCGAGCTATCTTTTCTTAAAATACAAAACTGGGTTACTGAATTTGTCAATTTACCATTTGAGCATTCTCTTTTTTTTGGTAATTCACGAAGGAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTAGGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTA</genome_strand>
        <mrna_strand>CCACTCGCGGCTCGTTGCCTTTGGTTGCATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTTTGATCGTCCACGGCAGCGATGATGTCATTTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTAGGAGTGGGAGTTGGTTGGGATATTTTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692236" ref_strand="+" ref_description="SGN-E692236 [LH_Ea08D02]">
      <seq>tcaggtcgttgcctttggttgcattcaaggaggagtggcataggaaattggcaatagcaagtccaaggagaccacttataaaaccacgcccggcgacggcgcgtgagttaatgagagtatgtagggagctccaagggagattcgaagaagtgaaagtaccatttctgatcgtccacggcagcgatgatgtcatctgcgatcccgcgtgcgcggaggagctatatcgccgatcgacaagcaaggacaagacactgaggatatatccaggtatgtggcaccagctggtcggagaaccggaggagaatgtggagcaagtgttcggagatgtcgttgagtggcttaaaatgagggccgacgtttcaacgggcgacaaggccactgtggacggtggcgcgtgaggagtgggagttggttgggatattctagttggggagtggttaaatatgccagtaaaagttagtgaaagatcagtaaacattgtgatcagtaagttaaagaaccaaaaaataaatttgtaccaggccatttatgtcaaaactttattagccatgtgactatttaaacttgtattaatgcaatatttgttgatttaaataataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="22514" stop="24204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22812" g_stop="22840" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22841" i_stop="23336" i_length="496">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.569" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23337" g_stop="23900" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="592" r_length="563" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="599" polyA_stop="609"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E692236" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22812" e_stop="22840"/>
          <exon e_start="23337" e_stop="23900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCTCGTTGCCTTTGGTTGCATTCAAGGTATGTAATTGATAATGAAAATATTTGTTTCGATTTCAATATAATTGAGCTTTTAGTTATTATATTTAAGATTTTTATTATTTAACTCATTATATTTAATAATCATATGTTTATATTTATGATTTATTTATTAAATTTTCATATATAAATTTATGTCCTTGTAGAAACTATTAAGTTCAAATGAATTTAATATCAAAAGATGACTATAATGAATTTAAATAAGTCGTCAATTCAATTAAGTTTAGTATAAAGGCTAGATTCGTTTTCAATTAAATTTTAAGTTTAATATTTATACATATATAAAAATGCAAATTGTAGAAACAATCTCTTGTAGAAATATAAAATAATCTATTTATATTTCATTTTCGAATTCAAATCTCGTGAGTAGCGAAAAACTCTAGTACACCGAGCTATCTTTTCTTAAAATACAAAACTGGGTTACTGAATTTGTCAATTTACCATTTGAGCATTCTCTTTTTTTTGGTAATTCACGAAGGAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGT-AGGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTA</genome_strand>
        <mrna_strand>TCAGGTCGTTGCCTTTGGTTGCATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGTGGCATAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCGGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTCCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAGACACTGAGGATATATCCAGGTATGTGGCACCAGCTGGTCGGAGAACCGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGGGCCGACGTTTCAACGGGCGACAAGGCCACTGTGGACGGTGGCGCGTGAGGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGGAGTGGTT-A-AATATGCCAGTAAAAGTTAGTGAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248388" ref_strand="+" ref_description="SGN-E248388 [cLEG-1-O9]">
      <seq>tggttttatctgctcgcttacatgtcaacctgcaccgagacatcattctgcggctcgttgcctttggttgcattcaaggaggagtggaataggaaattggcaatagcaagtccaaggagaccacttataaaaccacgccccgcgacggcgcgtgagttaatgagagtatgtagggagctgcaagggagattcgaagaagtgaaagtaccatttctgatcgtccacggcagcgatgatgtcatctgcgatcccgcgtgcgcggaggagctatatcgccgatcgacaagcaaggacaaaacactgaagatatatccaggtatgtggcaccagctggttggagaactggaggagaatgtggagcaagtgttcggagatgtcgttgagtggcttaaaatgagagccgacgtttcaaccggcgacaaggccactgttgacggtggcgcgtangagtgggagttggttgggatattctagttgggaagtggttaataatatgccagtcaaagtaagttaaagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="22502" stop="24077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22812" g_stop="22840" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="78" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22841" i_stop="23336" i_length="496">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.569" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23337" g_stop="23777" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="519" r_length="441" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E248388" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22812" e_stop="22840"/>
          <exon e_start="23337" e_stop="23777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCTCGTTGCCTTTGGTTGCATTCAAGGTATGTAATTGATAATGAAAATATTTGTTTCGATTTCAATATAATTGAGCTTTTAGTTATTATATTTAAGATTTTTATTATTTAACTCATTATATTTAATAATCATATGTTTATATTTATGATTTATTTATTAAATTTTCATATATAAATTTATGTCCTTGTAGAAACTATTAAGTTCAAATGAATTTAATATCAAAAGATGACTATAATGAATTTAAATAAGTCGTCAATTCAATTAAGTTTAGTATAAAGGCTAGATTCGTTTTCAATTAAATTTTAAGTTTAATATTTATACATATATAAAAATGCAAATTGTAGAAACAATCTCTTGTAGAAATATAAAATAATCTATTTATATTTCATTTTCGAATTCAAATCTCGTGAGTAGCGAAAAACTCTAGTACACCGAGCTATCTTTTCTTAAAATACAAAACTGGGTTACTGAATTTGTCAATTTACCATTTGAGCATTCTCTTTTTTTTGGTAATTCACGAAGGAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTAGGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATC</genome_strand>
        <mrna_strand>GCGGCTCGTTGCCTTTGGTTGCATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGTGGAATAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTANGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTCAAAGTAAGTTAAAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391992" ref_strand="+" ref_description="SGN-E391992 [TUS-34-C9](-)">
      <seq>ttgcctttggttgcattcaaggaggagtggaagaggaaattggcaatagcaagtccaaggagaccatttataaaaccacgccccgcgacggcgcgtgagttaatgagagtatgtagggagctgcaagggagattcgaagaagtgaaagtaccatttttgatcgtccacggcagcgatgatgtcatttgcgatcccgcgtgcgcggaggagctatatcgccgatcgacaagcaaggacaaaacactgaagatatatccaggtatgtggcaccagctggttggagaactggaggagaatgtggagcaagtgtttggagatgtcgttgagtggcttaaaatgagagccgacgtttcaaccggcgacaaggccactgttgacggtggcgcgtaggagtgggagttggttgggatattttagttgggaagtggttaataatatgccagtaaaagtaagttaaagatcagtaaacattgtgatcagtaagttaaagaaccaaaaaataaatttgtaccaggccatttatgtcaaaactttattagccatgtgactatttaaacttgtattaatgcaatatttgttgatttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="22520" stop="47060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22820" g_stop="22840" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22841" i_stop="23336" i_length="496">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.569" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23337" g_stop="23900" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="585" r_length="564" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23901" i_stop="24814" i_length="914">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24815" g_stop="24829" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="600" r_length="15" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E391992" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22820" e_stop="22840"/>
          <exon e_start="23337" e_stop="23900"/>
          <exon e_start="24815" e_stop="24829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCTTTGGTTGCATTCAAGGTATGTAATTGATAATGAAAATATTTGTTTCGATTTCAATATAATTGAGCTTTTAGTTATTATATTTAAGATTTTTATTATTTAACTCATTATATTTAATAATCATATGTTTATATTTATGATTTATTTATTAAATTTTCATATATAAATTTATGTCCTTGTAGAAACTATTAAGTTCAAATGAATTTAATATCAAAAGATGACTATAATGAATTTAAATAAGTCGTCAATTCAATTAAGTTTAGTATAAAGGCTAGATTCGTTTTCAATTAAATTTTAAGTTTAATATTTATACATATATAAAAATGCAAATTGTAGAAACAATCTCTTGTAGAAATATAAAATAATCTATTTATATTTCATTTTCGAATTCAAATCTCGTGAGTAGCGAAAAACTCTAGTACACCGAGCTATCTTTTCTTAAAATACAAAACTGGGTTACTGAATTTGTCAATTTACCATTTGAGCATTCTCTTTTTTTTGGTAATTCACGAAGGAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTAGGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTAGTTATGTTGATATTAATTTTTTACCAGATATGTATAAATTTCTAACAAAAAATTATTGATCTCAACTGAGACAATTTTATTATAAACTTTTGCATTCTTAGTATAGAAATATTGTAGAGCGCACATTTAGTGTTTAAAAAGCAAAGGTAATTTATTTTGTTAGATATGATTTAAATAATATATTTATAATTCTCTTATAAATAATTTGTGACGATAAAACAAATATGTGAATAATAGATAAAATCAACAATAAATTGCGCATATAAAATTAACTTAAATAATAAATTTATATTAGACATGTATAAATTTCTAACAAAAAATTATTGATCTCAACTGAGACAATTTTATTATAAACTTTTGCATTCTTAGTATAGAAATATTGTAGAGCGCACATTTAGTGTTTAAAAAGCAAAGGTAATTTATTTTGTTAGATATGATTTAAATAATATATTTATAATTCTCTTATAAATAATTTGTGACGATAAAAAAATATGTGAATAATAGATAAAATCAACAATAAATTGCGCATATAAAATTAACTTAAATAATAAATTTATATTCCTCTTATATTAATTTGTGAGGATAAAAAAAATATGTAAATGATTGAAAAATATTATTACTTATGAATATAAAATATAAAATAATTTTGTTTTAATTCTTTTCAAGTATAAAAAACTTAAATTAATCAACTTTTTTTATCATATTAACAACTATAAGGATATTTCACATATTTTGATTAAAAAAAAAGTCTTTACCAGCCCTTATTTATTTGCCAAACATATCAACAATTTTTTTTCAACTGCAAAATAAATTTCAAACACTTTAAAAAGTTAACTTTTTAAAAGTTACACTTTTTAAGTCAATTCAAACGGGGCTCAAAGTATTGTTGCATAATTTTCTTTCTCCTCAATTAGGACAGAGGAGAAAAA</genome_strand>
        <mrna_strand>TTGCCTTTGGTTGCATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCATTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTTTGATCGTCCACGGCAGCGATGATGTCATTTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTTGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTAGGAGTGGGAGTTGGTTGGGATATTTTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392168" ref_strand="+" ref_description="SGN-E392168 [TUS-34-I9](-)">
      <seq>tgcctttggttgcattcaaggaggagtggaagaggaaattggcaataggaagtccaaggagaccacttataaaaccacgccccgcgacggcgcgtgagttaatgagagtatgtagggagctgcaagggagattcgaagaagtgaaagtaccatttttgatcgtccacggcagcgatgatgtcatttgcgatcccgcgtgcgcggaggagctatatcgccgatcgacaagcaaggacaaaacactgaagatatatccaggtatgtggcaccagctggttggagaactggaggagaatgtggagcaagtgtttggagatgtcgttgagtggcttaaaatgagagccgacgtttcaaccggcgacaaggccactgttgacggtggcgggtaggagtgggagttggttgggatattttagttgggaagtggttaataatatgccagtaaaagtaagttaaagatcagtaaacattgtgatcagtaagttaaagaaccaaaaaataaatttgtaccaggccatttatgtcaaaactttattagccatgtgactatttaaacttgtattaatgcaatatttgttgatttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="22521" stop="47060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22821" g_stop="22840" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22841" i_stop="23336" i_length="496">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.569" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23337" g_stop="23900" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="584" r_length="564" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23901" i_stop="24814" i_length="914">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24815" g_stop="24829" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="599" r_length="15" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E392168" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22821" e_stop="22840"/>
          <exon e_start="23337" e_stop="23900"/>
          <exon e_start="24815" e_stop="24829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTTTGGTTGCATTCAAGGTATGTAATTGATAATGAAAATATTTGTTTCGATTTCAATATAATTGAGCTTTTAGTTATTATATTTAAGATTTTTATTATTTAACTCATTATATTTAATAATCATATGTTTATATTTATGATTTATTTATTAAATTTTCATATATAAATTTATGTCCTTGTAGAAACTATTAAGTTCAAATGAATTTAATATCAAAAGATGACTATAATGAATTTAAATAAGTCGTCAATTCAATTAAGTTTAGTATAAAGGCTAGATTCGTTTTCAATTAAATTTTAAGTTTAATATTTATACATATATAAAAATGCAAATTGTAGAAACAATCTCTTGTAGAAATATAAAATAATCTATTTATATTTCATTTTCGAATTCAAATCTCGTGAGTAGCGAAAAACTCTAGTACACCGAGCTATCTTTTCTTAAAATACAAAACTGGGTTACTGAATTTGTCAATTTACCATTTGAGCATTCTCTTTTTTTTGGTAATTCACGAAGGAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTAGGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTAGTTATGTTGATATTAATTTTTTACCAGATATGTATAAATTTCTAACAAAAAATTATTGATCTCAACTGAGACAATTTTATTATAAACTTTTGCATTCTTAGTATAGAAATATTGTAGAGCGCACATTTAGTGTTTAAAAAGCAAAGGTAATTTATTTTGTTAGATATGATTTAAATAATATATTTATAATTCTCTTATAAATAATTTGTGACGATAAAACAAATATGTGAATAATAGATAAAATCAACAATAAATTGCGCATATAAAATTAACTTAAATAATAAATTTATATTAGACATGTATAAATTTCTAACAAAAAATTATTGATCTCAACTGAGACAATTTTATTATAAACTTTTGCATTCTTAGTATAGAAATATTGTAGAGCGCACATTTAGTGTTTAAAAAGCAAAGGTAATTTATTTTGTTAGATATGATTTAAATAATATATTTATAATTCTCTTATAAATAATTTGTGACGATAAAAAAATATGTGAATAATAGATAAAATCAACAATAAATTGCGCATATAAAATTAACTTAAATAATAAATTTATATTCCTCTTATATTAATTTGTGAGGATAAAAAAAATATGTAAATGATTGAAAAATATTATTACTTATGAATATAAAATATAAAATAATTTTGTTTTAATTCTTTTCAAGTATAAAAAACTTAAATTAATCAACTTTTTTTATCATATTAACAACTATAAGGATATTTCACATATTTTGATTAAAAAAAAAGTCTTTACCAGCCCTTATTTATTTGCCAAACATATCAACAATTTTTTTTCAACTGCAAAATAAATTTCAAACACTTTAAAAAGTTAACTTTTTAAAAGTTACACTTTTTAAGTCAATTCAAACGGGGCTCAAAGTATTGTTGCATAATTTTCTTTCTCCTCAATTAGGACAGAGGAGAAAAA</genome_strand>
        <mrna_strand>TGCCTTTGGTTGCATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGTGGAAGAGGAAATTGGCAATAGGAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTTTGATCGTCCACGGCAGCGATGATGTCATTTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTTGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGGGTAGGAGTGGGAGTTGGTTGGGATATTTTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E399691" ref_strand="+" ref_description="SGN-E399691 [cSTC-2-I7]">
      <seq>ggagaactagtctcgagtttttttttttttttctggtaattcacgaaggaggagtggaagaagaaactagcaatagcaagtccaaggagaacacttataaaaccacgccccgcgacggcgcgtgagttaatgagagtatgcagggagctgcaagggagattcgaagaagtgaaagtaccatttctgatcgtccacggcagcgatgacatcatctgcgatcccgcctgcgcggaggagctatatcgccgatcgacaagtaaggacaagacactaaagatatatccagggatgtggcaccagctggtcggagaaccggaggagaatgtggagaaagtgttcggagatgtcgtggagtggcttaagacgagagccgagggtgcaactggtgacaagaccaccgtggacggtggcgcgtgaggaagtgggagttggttgggatattctagttggggagtggttaaatatgccggtnaaagttagttaaagattagtaaacagtgtgatcaataagttaaaggaccacaaaaataaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="23010" stop="24123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23315" g_stop="23823" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="536" r_length="510" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E399691" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E399691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23315" e_stop="23823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTGGTAATTCACGAAGGAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGT-AGG-AGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCA-AAAAATAAATTTG</genome_strand>
        <mrna_strand>TTTTTTCTGGTAATTCACGAAGGAGGAGTGGAAGAAGAAACTAGCAATAGCAAGTCCAAGGAGAACACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGCAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGACATCATCTGCGATCCCGCCTGCGCGGAGGAGCTATATCGCCGATCGACAAGTAAGGACAAGACACTAAAGATATATCCAGGGATGTGGCACCAGCTGGTCGGAGAACCGGAGGAGAATGTGGAGAAAGTGTTCGGAGATGTCGTGGAGTGGCTTAAGACGAGAGCCGAGGGTGCAACTGGTGACAAGACCACCGTGGACGGTGGCGCGTGAGGAAGTGGGAGTTGGTTGGGATATTCTAGTTGGGGAGTGGTT-A-AATATGCCGGTNAAAGTTAGTTAAAGATTAGTAAACAGTGTGATCAATAAGTTAAAGGACCACAAAAATAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397841" ref_strand="+" ref_description="SGN-E397841 [TUS-34-G9](-)">
      <seq>gaaattggcaatagcaagtccaaggagaacacttttaaaaccacgccccgcgacggcgcgtgagttaatgagagtatgtagggagctgcaagggagattcgaagaagtgaaagtaccatttttgatcgtccacggcagcgatgatgtcatttgcgatcccgcgtgcgcggaggagctatatcgccgatcgacaagcaaggacaaaacaatgaagatatatccaggtatgtggcaccagctggttggagaactggaggagaatgtggagcaagtgttcggagatgtcgttgagtggcttaaaatgagagccgacgtttcaaccggcgacaaggccactgttgacggtggcgcgtaggagtgggagttggttgggatattttagttgggaagtggttaataatatgccagtaaaagtaagttaaagatcagtaaacattgtgatcagtaagttaaagaaccaaaaaataaatttgtaccaggccatttatgtcaaaactttattagacgggtgactatttaaacttgtattaatgcaatatttgttgatttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="23051" stop="47060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23351" g_stop="23900" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23901" i_stop="24814" i_length="914">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.571" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24815" g_stop="24829" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="565" r_length="15" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E397841" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23351" e_stop="23900"/>
          <exon e_start="24815" e_stop="24829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTAGGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTAGTTATGTTGATATTAATTTTTTACCAGATATGTATAAATTTCTAACAAAAAATTATTGATCTCAACTGAGACAATTTTATTATAAACTTTTGCATTCTTAGTATAGAAATATTGTAGAGCGCACATTTAGTGTTTAAAAAGCAAAGGTAATTTATTTTGTTAGATATGATTTAAATAATATATTTATAATTCTCTTATAAATAATTTGTGACGATAAAACAAATATGTGAATAATAGATAAAATCAACAATAAATTGCGCATATAAAATTAACTTAAATAATAAATTTATATTAGACATGTATAAATTTCTAACAAAAAATTATTGATCTCAACTGAGACAATTTTATTATAAACTTTTGCATTCTTAGTATAGAAATATTGTAGAGCGCACATTTAGTGTTTAAAAAGCAAAGGTAATTTATTTTGTTAGATATGATTTAAATAATATATTTATAATTCTCTTATAAATAATTTGTGACGATAAAAAAATATGTGAATAATAGATAAAATCAACAATAAATTGCGCATATAAAATTAACTTAAATAATAAATTTATATTCCTCTTATATTAATTTGTGAGGATAAAAAAAATATGTAAATGATTGAAAAATATTATTACTTATGAATATAAAATATAAAATAATTTTGTTTTAATTCTTTTCAAGTATAAAAAACTTAAATTAATCAACTTTTTTTATCATATTAACAACTATAAGGATATTTCACATATTTTGATTAAAAAAAAAGTCTTTACCAGCCCTTATTTATTTGCCAAACATATCAACAATTTTTTTTCAACTGCAAAATAAATTTCAAACACTTTAAAAAGTTAACTTTTTAAAAGTTACACTTTTTAAGTCAATTCAAACGGGGCTCAAAGTATTGTTGCATAATTTTCTTTCTCCTCAATTAGGACAGAGGAGAAAAA</genome_strand>
        <mrna_strand>GAAATTGGCAATAGCAAGTCCAAGGAGAACACTTTTAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTTTGATCGTCCACGGCAGCGATGATGTCATTTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACAATGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTAGGAGTGGGAGTTGGTTGGGATATTTTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGACGGGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246098" ref_strand="-" ref_description="SGN-E246098 [cLEF-40-M13]">
      <seq>tggcaatagcaagtccaaggagaccacttataaaaccacgccccgcgacggcgcgtgagttaatgagagtatgtagggagctgcaagggagattcgaagaagtgaaagtaccatttctgatcgtccacggcagcgatgatgtcatctgcgatcccgcgtgcgcggaggagctatatcgccgatcgacaagcaaggacaaaacactgaagatatatccaggtatgtggcaccagctggttggagaactggaggagaatgtggagcaagtgttcggaaatgtcgttgagtggcttaaaatgagagccgacgtttcaaccggcgacaaggccactgttgacggtggcgcgtaggagtgggagttggttggaatattctagttgggaagtggttaataatatgccagtaaaagtaagttaaagatcagtaaacattgtgatcagtaagttaaagaaccaaaaaataaatttgtaccaggccatttatgtcaaaactttattagccatgtgactatttaaacttgtattaatgcaatatttgttgatttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="23056" stop="37971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23356" g_stop="23900" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23901" i_stop="25572" i_length="1672">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25573" g_stop="25595" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="568" r_length="23" r_score="0.783"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E246098" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246098" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23356" e_stop="23900"/>
          <exon e_start="25573" e_stop="25595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTAGGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTAGTTATGTTGATATTAATTTTTTACCAGATATGTATAAATTTCTAACAAAAAATTATTGATCTCAACTGAGACAATTTTATTATAAACTTTTGCATTCTTAGTATAGAAATATTGTAGAGCGCACATTTAGTGTTTAAAAAGCAAAGGTAATTTATTTTGTTAGATATGATTTAAATAATATATTTATAATTCTCTTATAAATAATTTGTGACGATAAAACAAATATGTGAATAATAGATAAAATCAACAATAAATTGCGCATATAAAATTAACTTAAATAATAAATTTATATTAGACATGTATAAATTTCTAACAAAAAATTATTGATCTCAACTGAGACAATTTTATTATAAACTTTTGCATTCTTAGTATAGAAATATTGTAGAGCGCACATTTAGTGTTTAAAAAGCAAAGGTAATTTATTTTGTTAGATATGATTTAAATAATATATTTATAATTCTCTTATAAATAATTTGTGACGATAAAAAAATATGTGAATAATAGATAAAATCAACAATAAATTGCGCATATAAAATTAACTTAAATAATAAATTTATATTCCTCTTATATTAATTTGTGAGGATAAAAAAAATATGTAAATGATTGAAAAATATTATTACTTATGAATATAAAATATAAAATAATTTTGTTTTAATTCTTTTCAAGTATAAAAAACTTAAATTAATCAACTTTTTTTATCATATTAACAACTATAAGGATATTTCACATATTTTGATTAAAAAAAAAGTCTTTACCAGCCCTTATTTATTTGCCAAACATATCAACAATTTTTTTTCAACTGCAAAATAAATTTCAAACACTTTAAAAAGTTAACTTTTTAAAAGTTACACTTTTTAAGTCAATTCAAACGGGGCTCAAAGTATTGTTGCATAATTTTCTTTCTCCTCAATTAGGACAGAGGAGAAAAACATCTCCAAATGAACTGAAAATTGTGCAAGCCATAAATTTCATCTTTACTGGTCTAAACAAGAACCCCATAATCGTTCTGCTGTGCAACATCCTCTCTAGTTTCATGGGAGACCTGAGGAACCACGATATCCAATGAAGCATGAGGTTTATCTTCTGCTACTTCACTGGAGAGATGGTCATCTTGTTCTCCAACTAGATGATGGAAGTGTGATTCATCAACTTCCTTAGCATCTTCACAGAAATCAATATCATCGACACTTTGAGCTACGTGAGATATCCGACCATGATCATCTTCACTTACTGTAATGCACAAATGAGGATTGTCCATCTCATTGCCGATGTGATATAGGTGAGAAGGATCAACATCAAAAGCTGTAGCAGGTATCCGATGTTGCATGGGTATCCCTGCTGCATAATATTGGTCTACCTCTTCTTTACGCTTACGTTTGCCCATCCCCTTCCTTCTTACTCTCTCCTTTCCACGTACTTTCTTTCCAGCTTCACTTTGTGAGTTTGATGCAACAAATACTGTACTTGCAATCTGATCCCTCAGGCATTCATAAGTAATATATCGGATTCTTGTGACAGATTGTAACTGTTGATCATCCAACCCATGAGTTGAAATGGTTTCTGCTATATGGGCAATCTCTCTCAGTGCAGCATTCTGCAGTGACAAATAAACAGACTATAGTGAAAAATCAAAGGCATGACTCAAAGTGAGAGAGCAGATGTTGGATAACTGAAAAATTGAAGAAAAAAAAATAA</genome_strand>
        <mrna_strand>TGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAAATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTAGGAGTGGGAGTTGGTTGGAATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394307" ref_strand="+" ref_description="SGN-E394307 [TUS-41-L23](-)">
      <seq>atcccgcgtgggcggaggagttatatcgccgattggcaggcaaggacaaaacagtgaagatatatccaggtatggggcaccagctggttggagaattggaggagaatgtggagcaagtgttcggagatgtcgttgagtggcttaaaatgagagccgacgtttcaaccggcgacaagtccactgttgacggtggcgcgtaggagtgggagttggttgggatattttagttgggaagaggttaataatatgaccagtaaaagtaagttaaagatcagtaaacattgtgatcagtaagttaaagaaccaaaaaataaatttgtaccaggccatttatgtcaaaactttattagccatgtgactatttaaacttgtattaatgcaatatttgttgatttagttatgttgatattaattttttaccagatatgtataaatttataacaaaaaattattgatgtcgccggagacaattttttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="23206" stop="29937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23506" g_stop="23994" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E394307" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23506" e_stop="23994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTAGGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATG-CCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTAGTTATGTTGATATTAATTTTTTACCAGATATGTATAAATTTCTAACAAAAAATTATTGATCTCAACTGAGACAATTTTATTATAAACTTTTGCA</genome_strand>
        <mrna_strand>ATCCCGCGTGGGCGGAGGAGTTATATCGCCGATTGGCAGGCAAGGACAAAACAGTGAAGATATATCCAGGTATGGGGCACCAGCTGGTTGGAGAATTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGTCCACTGTTGACGGTGGCGCGTAGGAGTGGGAGTTGGTTGGGATATTTTAGTTGGGAAGAGGTTAATAATATGACCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTAGTTATGTTGATATTAATTTTTTACCAGATATGTATAAATTTATAACAAAAAATTATTGATGTCGCCGGAGACAATTTTTTTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220363" ref_strand="-" ref_description="SGN-E220363 [cLEL-12-L16](-)">
      <seq>ttttttttttttttttttttttttttaaatcaacaaatattgcattaatacaagtttaaatagtcacatggctaataaagttttgacataaatggcctggtacaaatttattttttggttctttaacttactgatcacaatgtttactgatctttaacttacttttactggcatattattaaccacttcccaactagaatatcccaaccaacttccacttctacgcgccaccgtcaacagtggccttgtcgccggttgaaacgtcggctcttattttaagccactcaacgacatcttcgaacacttgctccacattctcctccagttctccaaccagctggtgccacatacctggatatatctttagtgttttgtccttgcttgtcgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="37971" stop="23236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24647" g_stop="24623" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.520"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24622" i_stop="23901" i_length="722">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23900" g_stop="23536" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="390" r_length="365" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E220363" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220363" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24647" e_stop="24623"/>
          <exon e_start="23900" e_stop="23536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTAATCAAAATATGTGAAATATCCTTATAGTTGTTAATATGATAAAAAAAGTTGATTAATTTAAGTTTTTTATACTTGAAAAGAATTAAAACAAAATTATTTTATATTTTATATTCATAAGTAATAATATTTTTCAATCATTTACATATTTTTTTTATCCTCACAAATTAATATAAGAGGAATATAAATTTATTATTTAAGTTAATTTTATATGCGCAATTTATTGTTGATTTTATCTATTATTCACATATTTTTTTATCGTCACAAATTATTTATAAGAGAATTATAAATATATTATTTAAATCATATCTAACAAAATAAATTACCTTTGCTTTTTAAACACTAAATGTGCGCTCTACAATATTTCTATACTAAGAATGCAAAAGTTTATAATAAAATTGTCTCAGTTGAGATCAATAATTTTTTGTTAGAAATTTATACATGTCTAATATAAATTTATTATTTAAGTTAATTTTATATGCGCAATTTATTGTTGATTTTATCTATTATTCACATATTTGTTTTATCGTCACAAATTATTTATAAGAGAATTATAAATATATTATTTAAATCATATCTAACAAAATAAATTACCTTTGCTTTTTAAACACTAAATGTGCGCTCTACAATATTTCTATACTAAGAATGCAAAAGTTTATAATAAAATTGTCTCAGTTGAGATCAATAATTTTTTGTTAGAAATTTATACATATCTGGTAAAAAATTAATATCAACATAACTAAATCAACAAATATTGCATTAATACAAGTTTAAATAGTCACATGGCTAATAAAGTTTTGACATAAATGGCCTGGTACAAATTTATTTTTTGGTTCTTTAACTTACTGATCACAATGTTTACTGATCTTTAACTTACTTTTACTGGCATATTATTAACCACTTCCCAACTAGAATATCCCAACCAACTCCCACTCCTACGCGCCACCGTCAACAGTGGCCTTGTCGCCGGTTGAAACGTCGGCTCTCATTTTAAGCCACTCAACGACATCTCCGAACACTTGCTCCACATTCTCCTCCAGTTCTCCAACCAGCTGGTGCCACATACCTGGATATATCTTCAGTGTTTTGTCCTTGCTTGTCGATC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATCAACAAATATTGCATTAATACAAGTTTAAATAGTCACATGGCTAATAAAGTTTTGACATAAATGGCCTGGTACAAATTTATTTTTTGGTTCTTTAACTTACTGATCACAATGTTTACTGATCTTTAACTTACTTTTACTGGCATATTATTAACCACTTCCCAACTAGAATATCCCAACCAACTTCCACTTCTACGCGCCACCGTCAACAGTGGCCTTGTCGCCGGTTGAAACGTCGGCTCTTATTTTAAGCCACTCAACGACATCTTCGAACACTTGCTCCACATTCTCCTCCAGTTCTCCAACCAGCTGGTGCCACATACCTGGATATATCTTTAGTGTTTTGTCCTTGCTTGTCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220712" ref_strand="-" ref_description="SGN-E220712 [cLEL-12-L16](-)">
      <seq>ttttttttttttttttttttttttttaaatcaacaaatattgcattaatacaagtttaaatagtcacatggctaataaagttttgacataaatggcctggtacaaatttattttttggttctttaacttactgatcacaatgtttactgatctttaacttacttttactggcatattattaaccacttcccaactagaatatcccaaccaactcccactcctacgcgccaccgtcaacagtggccttgtcgccggttgaaacgtcggttctcattttaagccactcaacgacattttctaacacttgctccacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="37971" stop="23311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24647" g_stop="24623" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.520"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24622" i_stop="23901" i_length="722">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23900" g_stop="23611" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="315" r_length="290" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E220712" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220712" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24647" e_stop="24623"/>
          <exon e_start="23900" e_stop="23611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTAATCAAAATATGTGAAATATCCTTATAGTTGTTAATATGATAAAAAAAGTTGATTAATTTAAGTTTTTTATACTTGAAAAGAATTAAAACAAAATTATTTTATATTTTATATTCATAAGTAATAATATTTTTCAATCATTTACATATTTTTTTTATCCTCACAAATTAATATAAGAGGAATATAAATTTATTATTTAAGTTAATTTTATATGCGCAATTTATTGTTGATTTTATCTATTATTCACATATTTTTTTATCGTCACAAATTATTTATAAGAGAATTATAAATATATTATTTAAATCATATCTAACAAAATAAATTACCTTTGCTTTTTAAACACTAAATGTGCGCTCTACAATATTTCTATACTAAGAATGCAAAAGTTTATAATAAAATTGTCTCAGTTGAGATCAATAATTTTTTGTTAGAAATTTATACATGTCTAATATAAATTTATTATTTAAGTTAATTTTATATGCGCAATTTATTGTTGATTTTATCTATTATTCACATATTTGTTTTATCGTCACAAATTATTTATAAGAGAATTATAAATATATTATTTAAATCATATCTAACAAAATAAATTACCTTTGCTTTTTAAACACTAAATGTGCGCTCTACAATATTTCTATACTAAGAATGCAAAAGTTTATAATAAAATTGTCTCAGTTGAGATCAATAATTTTTTGTTAGAAATTTATACATATCTGGTAAAAAATTAATATCAACATAACTAAATCAACAAATATTGCATTAATACAAGTTTAAATAGTCACATGGCTAATAAAGTTTTGACATAAATGGCCTGGTACAAATTTATTTTTTGGTTCTTTAACTTACTGATCACAATGTTTACTGATCTTTAACTTACTTTTACTGGCATATTATTAACCACTTCCCAACTAGAATATCCCAACCAACTCCCACTCCTACGCGCCACCGTCAACAGTGGCCTTGTCGCCGGTTGAAACGTCGGCTCTCATTTTAAGCCACTCAACGACATCTCCGAACACTTGCTCCACAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATCAACAAATATTGCATTAATACAAGTTTAAATAGTCACATGGCTAATAAAGTTTTGACATAAATGGCCTGGTACAAATTTATTTTTTGGTTCTTTAACTTACTGATCACAATGTTTACTGATCTTTAACTTACTTTTACTGGCATATTATTAACCACTTCCCAACTAGAATATCCCAACCAACTCCCACTCCTACGCGCCACCGTCAACAGTGGCCTTGTCGCCGGTTGAAACGTCGGTTCTCATTTTAAGCCACTCAACGACATTTTCTAACACTTGCTCCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352309" ref_strand="+" ref_description="SGN-E352309 [cTOS-9-M11]">
      <seq>aataatatgccagtaaaagtaagttaaagatcagtaaacattgtgatcagtaagttaaagaaccaaaaaataaatttgtaccaggccatttatgtcaaaactttattagccatgtgactatttaaacttgtattaatgcaatatttgttgatttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="23446" stop="47060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23746" g_stop="23900" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23901" i_stop="24814" i_length="914">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24815" g_stop="24828" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="169" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E352309" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>169</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23746" e_stop="23900"/>
          <exon e_start="24815" e_stop="24828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTAGTTATGTTGATATTAATTTTTTACCAGATATGTATAAATTTCTAACAAAAAATTATTGATCTCAACTGAGACAATTTTATTATAAACTTTTGCATTCTTAGTATAGAAATATTGTAGAGCGCACATTTAGTGTTTAAAAAGCAAAGGTAATTTATTTTGTTAGATATGATTTAAATAATATATTTATAATTCTCTTATAAATAATTTGTGACGATAAAACAAATATGTGAATAATAGATAAAATCAACAATAAATTGCGCATATAAAATTAACTTAAATAATAAATTTATATTAGACATGTATAAATTTCTAACAAAAAATTATTGATCTCAACTGAGACAATTTTATTATAAACTTTTGCATTCTTAGTATAGAAATATTGTAGAGCGCACATTTAGTGTTTAAAAAGCAAAGGTAATTTATTTTGTTAGATATGATTTAAATAATATATTTATAATTCTCTTATAAATAATTTGTGACGATAAAAAAATATGTGAATAATAGATAAAATCAACAATAAATTGCGCATATAAAATTAACTTAAATAATAAATTTATATTCCTCTTATATTAATTTGTGAGGATAAAAAAAATATGTAAATGATTGAAAAATATTATTACTTATGAATATAAAATATAAAATAATTTTGTTTTAATTCTTTTCAAGTATAAAAAACTTAAATTAATCAACTTTTTTTATCATATTAACAACTATAAGGATATTTCACATATTTTGATTAAAAAAAAAGTCTTTACCAGCCCTTATTTATTTGCCAAACATATCAACAATTTTTTTTCAACTGCAAAATAAATTTCAAACACTTTAAAAAGTTAACTTTTTAAAAGTTACACTTTTTAAGTCAATTCAAACGGGGCTCAAAGTATTGTTGCATAATTTTCTTTCTCCTCAATTAGGACAGAGGAGAAAA</genome_strand>
        <mrna_strand>AATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352499" ref_strand="+" ref_description="SGN-E352499 [cTOS-9-A16]">
      <seq>aataatatgccagtaaaagtaagttaaagatcagtaaacattgtgatcagtaagttaaagaaccaaaaaataaatttgtaccaggccatttatgtcaaaactttattagccatgtgactatttaaacttgtattaatgcaatatttgttgatttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="23446" stop="47060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23746" g_stop="23900" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23901" i_stop="24814" i_length="914">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24815" g_stop="24828" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="169" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E352499" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>169</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23746" e_stop="23900"/>
          <exon e_start="24815" e_stop="24828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTAGTTATGTTGATATTAATTTTTTACCAGATATGTATAAATTTCTAACAAAAAATTATTGATCTCAACTGAGACAATTTTATTATAAACTTTTGCATTCTTAGTATAGAAATATTGTAGAGCGCACATTTAGTGTTTAAAAAGCAAAGGTAATTTATTTTGTTAGATATGATTTAAATAATATATTTATAATTCTCTTATAAATAATTTGTGACGATAAAACAAATATGTGAATAATAGATAAAATCAACAATAAATTGCGCATATAAAATTAACTTAAATAATAAATTTATATTAGACATGTATAAATTTCTAACAAAAAATTATTGATCTCAACTGAGACAATTTTATTATAAACTTTTGCATTCTTAGTATAGAAATATTGTAGAGCGCACATTTAGTGTTTAAAAAGCAAAGGTAATTTATTTTGTTAGATATGATTTAAATAATATATTTATAATTCTCTTATAAATAATTTGTGACGATAAAAAAATATGTGAATAATAGATAAAATCAACAATAAATTGCGCATATAAAATTAACTTAAATAATAAATTTATATTCCTCTTATATTAATTTGTGAGGATAAAAAAAATATGTAAATGATTGAAAAATATTATTACTTATGAATATAAAATATAAAATAATTTTGTTTTAATTCTTTTCAAGTATAAAAAACTTAAATTAATCAACTTTTTTTATCATATTAACAACTATAAGGATATTTCACATATTTTGATTAAAAAAAAAGTCTTTACCAGCCCTTATTTATTTGCCAAACATATCAACAATTTTTTTTCAACTGCAAAATAAATTTCAAACACTTTAAAAAGTTAACTTTTTAAAAGTTACACTTTTTAAGTCAATTCAAACGGGGCTCAAAGTATTGTTGCATAATTTTCTTTCTCCTCAATTAGGACAGAGGAGAAAA</genome_strand>
        <mrna_strand>AATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395484" ref_strand="+" ref_description="SGN-E395484 [TUS-16-L11](-)">
      <seq>agctggaaagaaagtacgggaaaggagagagtaagaaggaaggggatgggcaaacgtaagcgtaaagaagaggtagaccaatattatgcagcagggatacccatgcaacatcggatacctgctacagcttttgatgttgatccttctcacctatatcacatcggcaatgagatggacaatcctcatttgtgcattacagtaagtgaagatgatcatggtcggatatctcacgtagctcaaagtgtcgatgatattgatttctgtgaagatgctaaggaagttgatgaatcacacttccatcatctagttggagaacaagatgaccatctctccagtgaagtagcagaagataaacctcatgcttcattggatatcgtggttcctcaggtctcccatgaaactagagaggatgttgcacagcagaacgattatggggttcttgtttagaccagtaaagatgaaatttatggcttgcacaattttcagttcatttggagatgtttttctcctctgtcctaattgaggagaaagaaaattatgcaacaatactttgagccccgtttgaattgacttaaaaagtgtaacttttaaaaagttaactttttaaagtgtttgaaatttattttgcagttgaaaaaaaattgttgatatgtttggcaaataaataagggctggtaaagacttttttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="25630" stop="24331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25330" g_stop="24631" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E395484" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25330" e_stop="24631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGGAAAGAAAGTACGTGGAAAGGAGAGAGTAAGAAGGAAGGGGATGGGCAAACGTAAGCGTAAAGAAGAGGTAGACCAATATTATGCAGCAGGGATACCCATGCAACATCGGATACCTGCTACAGCTTTTGATGTTGATCCTTCTCACCTATATCACATCGGCAATGAGATGGACAATCCTCATTTGTGCATTACAGTAAGTGAAGATGATCATGGTCGGATATCTCACGTAGCTCAAAGTGTCGATGATATTGATTTCTGTGAAGATGCTAAGGAAGTTGATGAATCACACTTCCATCATCTAGTTGGAGAACAAGATGACCATCTCTCCAGTGAAGTAGCAGAAGATAAACCTCATGCTTCATTGGATATCGTGGTTCCTCAGGTCTCCCATGAAACTAGAGAGGATGTTGCACAGCAGAACGATTATGGGGTTCTTGTTTAGACCAGTAAAGATGAAATTTATGGCTTGCACAATTTTCAGTTCATTTGGAGATGTTTTTCTCCTCTGTCCTAATTGAGGAGAAAGAAAATTATGCAACAATACTTTGAGCCCCGTTTGAATTGACTTAAAAAGTGTAACTTTTAAAAAGTTAACTTTTTAAAGTGTTTGAAATTTATTTTGCAGTTGAAAAAAAATTGTTGATATGTTTGGCAAATAAATAAGGGCTGGTAAAGACTTTTTTTTTAATCAAAA</genome_strand>
        <mrna_strand>AGCTGGAAAGAAAGTACG-GGAAAGGAGAGAGTAAGAAGGAAGGGGATGGGCAAACGTAAGCGTAAAGAAGAGGTAGACCAATATTATGCAGCAGGGATACCCATGCAACATCGGATACCTGCTACAGCTTTTGATGTTGATCCTTCTCACCTATATCACATCGGCAATGAGATGGACAATCCTCATTTGTGCATTACAGTAAGTGAAGATGATCATGGTCGGATATCTCACGTAGCTCAAAGTGTCGATGATATTGATTTCTGTGAAGATGCTAAGGAAGTTGATGAATCACACTTCCATCATCTAGTTGGAGAACAAGATGACCATCTCTCCAGTGAAGTAGCAGAAGATAAACCTCATGCTTCATTGGATATCGTGGTTCCTCAGGTCTCCCATGAAACTAGAGAGGATGTTGCACAGCAGAACGATTATGGGGTTCTTGTTTAGACCAGTAAAGATGAAATTTATGGCTTGCACAATTTTCAGTTCATTTGGAGATGTTTTTCTCCTCTGTCCTAATTGAGGAGAAAGAAAATTATGCAACAATACTTTGAGCCCCGTTTGAATTGACTTAAAAAGTGTAACTTTTAAAAAGTTAACTTTTTAAAGTGTTTGAAATTTATTTTGCAGTTGAAAAAAAATTGTTGATATGTTTGGCAAATAAATAAGGGCTGGTAAAGACTTTTTTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332059" ref_strand="-" ref_description="SGN-E332059 [cTOD-16-E13]">
      <seq>gggatcagattgcaagtacagtatttgttgcatcaaactcacaaagtgaagctggaaagaaagtacgtggaaaggagagagtaagaaggaaggggatgggcaaacgtaagcgtaaagaagaggtagaccaatattatgcagcagggatacccatgcaacatcggatacctgctacagcttttgatgttgatccttctcacctatatcacatcggcaatgagatggacaatcctcatttgtgcattacagtaagtgaagatgatcatggtcggatatctcacgtagctcaaagtgtcgatgatattgatttctgtgaagatgctaaggaagttgatgaatcacacttccatcatctagttggagaacaagatgaccatctctccagtgaagtagcagaagataaacctcatgcttcattggatatcgtggttcctcaggtctcccatgaaactagagaggatgttgcacagcagaacgattatggggttcttgtttagaccagtaaagatgaaatttatggcttgcacaattttcagttcatttggagatgtttttctcctctgtcctaattgaggagaaagaaaattatgcaacaatactttgagccccgtttgaattgacttaaaaagtgtaacttttaaaaagttaactttttaaagtgtttgaaatttattttgcagttgaaaaaaaattgttgataaaaaaaaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="25679" stop="24380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25379" g_stop="24681" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="700" polyA_stop="725"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E332059" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332059" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25379" e_stop="24681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATCAGATTGCAAGTACAGTATTTGTTGCATCAAACTCACAAAGTGAAGCTGGAAAGAAAGTACGTGGAAAGGAGAGAGTAAGAAGGAAGGGGATGGGCAAACGTAAGCGTAAAGAAGAGGTAGACCAATATTATGCAGCAGGGATACCCATGCAACATCGGATACCTGCTACAGCTTTTGATGTTGATCCTTCTCACCTATATCACATCGGCAATGAGATGGACAATCCTCATTTGTGCATTACAGTAAGTGAAGATGATCATGGTCGGATATCTCACGTAGCTCAAAGTGTCGATGATATTGATTTCTGTGAAGATGCTAAGGAAGTTGATGAATCACACTTCCATCATCTAGTTGGAGAACAAGATGACCATCTCTCCAGTGAAGTAGCAGAAGATAAACCTCATGCTTCATTGGATATCGTGGTTCCTCAGGTCTCCCATGAAACTAGAGAGGATGTTGCACAGCAGAACGATTATGGGGTTCTTGTTTAGACCAGTAAAGATGAAATTTATGGCTTGCACAATTTTCAGTTCATTTGGAGATGTTTTTCTCCTCTGTCCTAATTGAGGAGAAAGAAAATTATGCAACAATACTTTGAGCCCCGTTTGAATTGACTTAAAAAGTGTAACTTTTAAAAAGTTAACTTTTTAAAGTGTTTGAAATTTATTTTGCAGTTGAAAAAAAATTGTTGAT</genome_strand>
        <mrna_strand>GGGATCAGATTGCAAGTACAGTATTTGTTGCATCAAACTCACAAAGTGAAGCTGGAAAGAAAGTACGTGGAAAGGAGAGAGTAAGAAGGAAGGGGATGGGCAAACGTAAGCGTAAAGAAGAGGTAGACCAATATTATGCAGCAGGGATACCCATGCAACATCGGATACCTGCTACAGCTTTTGATGTTGATCCTTCTCACCTATATCACATCGGCAATGAGATGGACAATCCTCATTTGTGCATTACAGTAAGTGAAGATGATCATGGTCGGATATCTCACGTAGCTCAAAGTGTCGATGATATTGATTTCTGTGAAGATGCTAAGGAAGTTGATGAATCACACTTCCATCATCTAGTTGGAGAACAAGATGACCATCTCTCCAGTGAAGTAGCAGAAGATAAACCTCATGCTTCATTGGATATCGTGGTTCCTCAGGTCTCCCATGAAACTAGAGAGGATGTTGCACAGCAGAACGATTATGGGGTTCTTGTTTAGACCAGTAAAGATGAAATTTATGGCTTGCACAATTTTCAGTTCATTTGGAGATGTTTTTCTCCTCTGTCCTAATTGAGGAGAAAGAAAATTATGCAACAATACTTTGAGCCCCGTTTGAATTGACTTAAAAAGTGTAACTTTTAAAAAGTTAACTTTTTAAAGTGTTTGAAATTTATTTTGCAGTTGAAAAAAAATTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332180" ref_strand="-" ref_description="SGN-E332180 [cTOD-16-D12]">
      <seq>aaagtgaagctggaaagaaagtacgtggaaaggagagagtaagaaggaaggggatgggcaaacgtaagcgtaaagaagaggtagaccaatattatgcagcagggatacccatgcaacatcggatacctgctacagcttttgatgttgatccttctcacctatatcacatcggcaatgagatggacaatcctcatttgtgcattacagtaagtgaagatgatcatggtcggatatctcacgtagctcaaagtgtcgatgatattgatttctgtgaagatgctaaggaagttgatgaatcacacttccatcatctagttggagaacaagatgaccatctctccagtgaagtagcagaagataaacctcatgcttcattggatatcgtggttcctcaggtctcccatgaaactagagaggatgttgcacagcagaacgattatggggttcttgtttagaccagtaaagatgaaatttatggcttgcacaattttcagttcatttggagatgtttttctcctctgtcctaattgaggagaaagaaaattatgcaacaatactttgagccccgtttgaattgacttaaaaagtgtaacttttaaaaagttaactttttaaagtgtttgaaatttattttgcagttgaaaaaaaattgttgataaaaaaaaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="25637" stop="24380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25337" g_stop="24681" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="658" polyA_stop="683"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E332180" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332180" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25337" e_stop="24681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGAAGCTGGAAAGAAAGTACGTGGAAAGGAGAGAGTAAGAAGGAAGGGGATGGGCAAACGTAAGCGTAAAGAAGAGGTAGACCAATATTATGCAGCAGGGATACCCATGCAACATCGGATACCTGCTACAGCTTTTGATGTTGATCCTTCTCACCTATATCACATCGGCAATGAGATGGACAATCCTCATTTGTGCATTACAGTAAGTGAAGATGATCATGGTCGGATATCTCACGTAGCTCAAAGTGTCGATGATATTGATTTCTGTGAAGATGCTAAGGAAGTTGATGAATCACACTTCCATCATCTAGTTGGAGAACAAGATGACCATCTCTCCAGTGAAGTAGCAGAAGATAAACCTCATGCTTCATTGGATATCGTGGTTCCTCAGGTCTCCCATGAAACTAGAGAGGATGTTGCACAGCAGAACGATTATGGGGTTCTTGTTTAGACCAGTAAAGATGAAATTTATGGCTTGCACAATTTTCAGTTCATTTGGAGATGTTTTTCTCCTCTGTCCTAATTGAGGAGAAAGAAAATTATGCAACAATACTTTGAGCCCCGTTTGAATTGACTTAAAAAGTGTAACTTTTAAAAAGTTAACTTTTTAAAGTGTTTGAAATTTATTTTGCAGTTGAAAAAAAATTGTTGAT</genome_strand>
        <mrna_strand>AAAGTGAAGCTGGAAAGAAAGTACGTGGAAAGGAGAGAGTAAGAAGGAAGGGGATGGGCAAACGTAAGCGTAAAGAAGAGGTAGACCAATATTATGCAGCAGGGATACCCATGCAACATCGGATACCTGCTACAGCTTTTGATGTTGATCCTTCTCACCTATATCACATCGGCAATGAGATGGACAATCCTCATTTGTGCATTACAGTAAGTGAAGATGATCATGGTCGGATATCTCACGTAGCTCAAAGTGTCGATGATATTGATTTCTGTGAAGATGCTAAGGAAGTTGATGAATCACACTTCCATCATCTAGTTGGAGAACAAGATGACCATCTCTCCAGTGAAGTAGCAGAAGATAAACCTCATGCTTCATTGGATATCGTGGTTCCTCAGGTCTCCCATGAAACTAGAGAGGATGTTGCACAGCAGAACGATTATGGGGTTCTTGTTTAGACCAGTAAAGATGAAATTTATGGCTTGCACAATTTTCAGTTCATTTGGAGATGTTTTTCTCCTCTGTCCTAATTGAGGAGAAAGAAAATTATGCAACAATACTTTGAGCCCCGTTTGAATTGACTTAAAAAGTGTAACTTTTAAAAAGTTAACTTTTTAAAGTGTTTGAAATTTATTTTGCAGTTGAAAAAAAATTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712984" ref_strand="+" ref_description="SGN-E712984 [FB06BE12]">
      <seq>cagggatacccatgcaacatcggatacctgctacagcttttgatgttgatccttctcacctatatcacatcggcaatgagatggacaatcctcatttgtgcattacagtaagtgaagatgatcatggtcggatatctcacgtagctcaaagtgtcgatgatattgatttctgtgaagatgctaaggaagttgatgaatcacacttccatcatctagttggagaacaagatgaccatctctccagtgaagtagcagaagataaacctcatgcttcattggatatcgtggttcctcaggtctcccatgaaactagagaggatgttgcacagcagaacgattatggggttcttgtttagaccagtaaagatgaaatttatggcttgcacaattttcagttcatttggagatgtttttctcctctgtcctaattgaggagaaagaaaattatgcaacaatactttgagccccgtttgaattgacttaaaaagtgtaacttttaaaaagttaactttttaaagtgtttgaaatttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="25538" stop="24408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25238" g_stop="24690" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E712984" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25238" e_stop="24690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGATACCCATGCAACATCGGATACCTGCTACAGCTTTTGATGTTGATCCTTCTCACCTATATCACATCGGCAATGAGATGGACAATCCTCATTTGTGCATTACAGTAAGTGAAGATGATCATGGTCGGATATCTCACGTAGCTCAAAGTGTCGATGATATTGATTTCTGTGAAGATGCTAAGGAAGTTGATGAATCACACTTCCATCATCTAGTTGGAGAACAAGATGACCATCTCTCCAGTGAAGTAGCAGAAGATAAACCTCATGCTTCATTGGATATCGTGGTTCCTCAGGTCTCCCATGAAACTAGAGAGGATGTTGCACAGCAGAACGATTATGGGGTTCTTGTTTAGACCAGTAAAGATGAAATTTATGGCTTGCACAATTTTCAGTTCATTTGGAGATGTTTTTCTCCTCTGTCCTAATTGAGGAGAAAGAAAATTATGCAACAATACTTTGAGCCCCGTTTGAATTGACTTAAAAAGTGTAACTTTTAAAAAGTTAACTTTTTAAAGTGTTTGAAATTTATTTTGCAGTTGAAAAAAA</genome_strand>
        <mrna_strand>CAGGGATACCCATGCAACATCGGATACCTGCTACAGCTTTTGATGTTGATCCTTCTCACCTATATCACATCGGCAATGAGATGGACAATCCTCATTTGTGCATTACAGTAAGTGAAGATGATCATGGTCGGATATCTCACGTAGCTCAAAGTGTCGATGATATTGATTTCTGTGAAGATGCTAAGGAAGTTGATGAATCACACTTCCATCATCTAGTTGGAGAACAAGATGACCATCTCTCCAGTGAAGTAGCAGAAGATAAACCTCATGCTTCATTGGATATCGTGGTTCCTCAGGTCTCCCATGAAACTAGAGAGGATGTTGCACAGCAGAACGATTATGGGGTTCTTGTTTAGACCAGTAAAGATGAAATTTATGGCTTGCACAATTTTCAGTTCATTTGGAGATGTTTTTCTCCTCTGTCCTAATTGAGGAGAAAGAAAATTATGCAACAATACTTTGAGCCCCGTTTGAATTGACTTAAAAAGTGTAACTTTTAAAAAGTTAACTTTTTAAAGTGTTTGAAATTTAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221972" ref_strand="+" ref_description="SGN-E221972 [cLEL-10-N9](-)">
      <seq>atgagatggacaatcctctttgtgcattacagtaagtaagatgatcatggtggatatctcacgtagctcaaagtgtcgatgatattgatttctgtgaagatgctaaggaagttgatgaatcacacttccacatctagttggagaacaagatgaccatctctccagtgaagtagcagaagataaacctcatgcttcattggatatcgtggttcctcaggtctcccatgaaactagagaggatgttgcacagcagaacgattatggggttcttgtttagaccagtaaagatgaaatttatggcttgcacaattttcagttcatttggagatgtttttctcctctgtcctaattgaggagaaagaaaaattatgcaacaatactttgagccccgtttgaattgacttaaaaagtgtaacttttaaaaagttaactttttaaagtgtttgaaatttattttgcagttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="25463" stop="24389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25163" g_stop="24690" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="472" polyA_stop="481"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E221972" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25163" e_stop="24690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGATGGACAATCCTCATTTGTGCATTACAGTAAGTGAAGATGATCATGGTCGGATATCTCACGTAGCTCAAAGTGTCGATGATATTGATTTCTGTGAAGATGCTAAGGAAGTTGATGAATCACACTTCCATCATCTAGTTGGAGAACAAGATGACCATCTCTCCAGTGAAGTAGCAGAAGATAAACCTCATGCTTCATTGGATATCGTGGTTCCTCAGGTCTCCCATGAAACTAGAGAGGATGTTGCACAGCAGAACGATTATGGGGTTCTTGTTTAGACCAGTAAAGATGAAATTTATGGCTTGCACAATTTTCAGTTCATTTGGAGATGTTTTTCTCCTCTGTCCTAATTGAGGAGAAAG-AAAATTATGCAACAATACTTTGAGCCCCGTTTGAATTGACTTAAAAAGTGTAACTTTTAAAAAGTTAACTTTTTAAAGTGTTTGAAATTTATTTTGCAGTTGAAAAAAA</genome_strand>
        <mrna_strand>ATGAGATGGACAATCCTC-TTTGTGCATTACAGTAAGT-AAGATGATCATGGT-GGATATCTCACGTAGCTCAAAGTGTCGATGATATTGATTTCTGTGAAGATGCTAAGGAAGTTGATGAATCACACTTCCA-CATCTAGTTGGAGAACAAGATGACCATCTCTCCAGTGAAGTAGCAGAAGATAAACCTCATGCTTCATTGGATATCGTGGTTCCTCAGGTCTCCCATGAAACTAGAGAGGATGTTGCACAGCAGAACGATTATGGGGTTCTTGTTTAGACCAGTAAAGATGAAATTTATGGCTTGCACAATTTTCAGTTCATTTGGAGATGTTTTTCTCCTCTGTCCTAATTGAGGAGAAAGAAAAATTATGCAACAATACTTTGAGCCCCGTTTGAATTGACTTAAAAAGTGTAACTTTTAAAAAGTTAACTTTTTAAAGTGTTTGAAATTTATTTTGCAGTTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221557" ref_strand="+" ref_description="SGN-E221557 [cLEL-10-N9](-)">
      <seq>tcctcatttgtgcattacagtaagtgaagatgatcatggtcggatatctcacgtagctcaaagtgtcgatgatattgatttctgtgaagatgctaaggaagttgatgaatcacacttccatcatctagttggagaacaagatgaccatctctccagtgaagtagcagaagataaacctcatgcttcattggatatcgtggttcctcaggtctcccatgaaactagagaggatgttgcacagcagaacgattatggggttcttgtttagaccagtaaagatgaaatttatggcttgcacaattttcagttcatttggagatgtttttctcctctgtcctaattgaggagaaagaaaattatgcaacaatactttgagccccgtttgaattgacttaaaaagtgtaacttttaaaaagttaactttttaaagtgtttgaaatttattttgcagttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="25450" stop="24389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25150" g_stop="24690" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="462" polyA_stop="471"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E221557" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25150" e_stop="24690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCATTTGTGCATTACAGTAAGTGAAGATGATCATGGTCGGATATCTCACGTAGCTCAAAGTGTCGATGATATTGATTTCTGTGAAGATGCTAAGGAAGTTGATGAATCACACTTCCATCATCTAGTTGGAGAACAAGATGACCATCTCTCCAGTGAAGTAGCAGAAGATAAACCTCATGCTTCATTGGATATCGTGGTTCCTCAGGTCTCCCATGAAACTAGAGAGGATGTTGCACAGCAGAACGATTATGGGGTTCTTGTTTAGACCAGTAAAGATGAAATTTATGGCTTGCACAATTTTCAGTTCATTTGGAGATGTTTTTCTCCTCTGTCCTAATTGAGGAGAAAGAAAATTATGCAACAATACTTTGAGCCCCGTTTGAATTGACTTAAAAAGTGTAACTTTTAAAAAGTTAACTTTTTAAAGTGTTTGAAATTTATTTTGCAGTTGAAAAAAA</genome_strand>
        <mrna_strand>TCCTCATTTGTGCATTACAGTAAGTGAAGATGATCATGGTCGGATATCTCACGTAGCTCAAAGTGTCGATGATATTGATTTCTGTGAAGATGCTAAGGAAGTTGATGAATCACACTTCCATCATCTAGTTGGAGAACAAGATGACCATCTCTCCAGTGAAGTAGCAGAAGATAAACCTCATGCTTCATTGGATATCGTGGTTCCTCAGGTCTCCCATGAAACTAGAGAGGATGTTGCACAGCAGAACGATTATGGGGTTCTTGTTTAGACCAGTAAAGATGAAATTTATGGCTTGCACAATTTTCAGTTCATTTGGAGATGTTTTTCTCCTCTGTCCTAATTGAGGAGAAAGAAAATTATGCAACAATACTTTGAGCCCCGTTTGAATTGACTTAAAAAGTGTAACTTTTAAAAAGTTAACTTTTTAAAGTGTTTGAAATTTATTTTGCAGTTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429633" ref_strand="+" ref_description="SGN-E429633 [STM-52-K12]">
      <seq>aagatgttgaggaaagtgaatacatgcagtggtatatgagaattacaaggaagttggttgggaggcctgtacctatctcatctgagtttcaaagaatgaatgctgcacttcgagagattgcccatatagcagacaccatttcaactcatgggttggatgatcaacagttacaatctgtcacaagaatccgatatattacttatgaatgcctgagggatcagattgcaagtacagtagttgttgcatcgaactcacaaagtgaagtcggaaagaaagtacgtggaaaggagagagtaagaaggaaggggatgggcaaacgtaagcgtaaagaagaggtagagcaatattatgccgcagggatacccatgcaacatcggatacctgctacaacttttgatgttgatccttctcatctatatcacatcggcaatgagatggataatcctcatttgtgcattacagtaagtgaagatgatcatggtcggatatctcatgtggctcatagtgtcgatgatattgatttctgtgaagatgctaaggaagttgatgaatcacacttccatcatttagttggagagcaagatggccatctctccagtgaagtagcagaagataaacctcatgcttcaatggatatcgtggttcctcaggtctcccatgaaactagagaggatgttgcacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="26022" stop="24609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25722" g_stop="25625" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25624" i_stop="25495" i_length="130">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25494" g_stop="24909" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="684" r_length="586" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E429633" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25722" e_stop="25625"/>
          <exon e_start="25494" e_stop="24909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGTTGAGGAAAGTGAATACATGCAGTGGTATATGAGAATTACAAGGAAGTTGGTTGGGAGGCCTGTACCTATCTCATCTGAGTTTCAACGGATGGTAAATTATCAGATATATGTAACTCAGGATTATTTTTTTTTCTTCAATTTTTCAGTTATCCAACATCTGCTCTCTCACTTTGAGTCATGCCTTTGATTTTTCACTATAGTCTGTTTATTTGTCACTGCAGAATGCTGCACTGAGAGAGATTGCCCATATAGCAGAAACCATTTCAACTCATGGGTTGGATGATCAACAGTTACAATCTGTCACAAGAATCCGATATATTACTTATGAATGCCTGAGGGATCAGATTGCAAGTACAGTATTTGTTGCATCAAACTCACAAAGTGAAGCTGGAAAGAAAGTACGTGGAAAGGAGAGAGTAAGAAGGAAGGGGATGGGCAAACGTAAGCGTAAAGAAGAGGTAGACCAATATTATGCAGCAGGGATACCCATGCAACATCGGATACCTGCTACAGCTTTTGATGTTGATCCTTCTCACCTATATCACATCGGCAATGAGATGGACAATCCTCATTTGTGCATTACAGTAAGTGAAGATGATCATGGTCGGATATCTCACGTAGCTCAAAGTGTCGATGATATTGATTTCTGTGAAGATGCTAAGGAAGTTGATGAATCACACTTCCATCATCTAGTTGGAGAACAAGATGACCATCTCTCCAGTGAAGTAGCAGAAGATAAACCTCATGCTTCATTGGATATCGTGGTTCCTCAGGTCTCCCATGAAACTAGAGAGGATGTTGCACAGC</genome_strand>
        <mrna_strand>AAGATGTTGAGGAAAGTGAATACATGCAGTGGTATATGAGAATTACAAGGAAGTTGGTTGGGAGGCCTGTACCTATCTCATCTGAGTTTCAAAGAATG..................................................................................................................................AATGCTGCACTTCGAGAGATTGCCCATATAGCAGACACCATTTCAACTCATGGGTTGGATGATCAACAGTTACAATCTGTCACAAGAATCCGATATATTACTTATGAATGCCTGAGGGATCAGATTGCAAGTACAGTAGTTGTTGCATCGAACTCACAAAGTGAAGTCGGAAAGAAAGTACGTGGAAAGGAGAGAGTAAGAAGGAAGGGGATGGGCAAACGTAAGCGTAAAGAAGAGGTAGAGCAATATTATGCCGCAGGGATACCCATGCAACATCGGATACCTGCTACAACTTTTGATGTTGATCCTTCTCATCTATATCACATCGGCAATGAGATGGATAATCCTCATTTGTGCATTACAGTAAGTGAAGATGATCATGGTCGGATATCTCATGTGGCTCATAGTGTCGATGATATTGATTTCTGTGAAGATGCTAAGGAAGTTGATGAATCACACTTCCATCATTTAGTTGGAGAGCAAGATGGCCATCTCTCCAGTGAAGTAGCAGAAGATAAACCTCATGCTTCAATGGATATCGTGGTTCCTCAGGTCTCCCATGAAACTAGAGAGGATGTTGCACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457647" ref_strand="+" ref_description="SGN-E457647 [cPRO-3-E22]">
      <seq>aagatgttgaggaaagtgaatacatgcagtggtatatgagaattacaaggaagttggttgggaggcctgtacctatctcatctgagtttcaaagaatgaatgctgcacttcgagagattgcccatatagcagacaccatttcaactcatgggttggatgatcaacagttacaatctgtcacaagaatccgatatattacttatgaatgcctgagggatcagattgcaagtacagtagttgttgcatcgaactcacaaagtgaagtcggaaagaaagtacgtggaaaggagagagtaagaaggaaggggatgggcaaacgtaagcgtaaagaagaggtagagcaatattatgccgcagggatacccatgcaacatcggatacctgctacaacttttgatgttgatccttctcatctatatcacatcggcaatgagatggataatcctcatttgtgcattacagtaagtgaagatgatcatggtcggatatctcatgtggctcatagtgtcgatgatattgatttctgtgaagaatgctaggaagttgatgaatcacacttccatcatttagttggagagcaagatggccatctctccagtgaagtagcagaagataaacctcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="26022" stop="24668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25722" g_stop="25625" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25624" i_stop="25495" i_length="130">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25494" g_stop="24968" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="625" r_length="527" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E457647" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25722" e_stop="25625"/>
          <exon e_start="25494" e_stop="24968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGTTGAGGAAAGTGAATACATGCAGTGGTATATGAGAATTACAAGGAAGTTGGTTGGGAGGCCTGTACCTATCTCATCTGAGTTTCAACGGATGGTAAATTATCAGATATATGTAACTCAGGATTATTTTTTTTTCTTCAATTTTTCAGTTATCCAACATCTGCTCTCTCACTTTGAGTCATGCCTTTGATTTTTCACTATAGTCTGTTTATTTGTCACTGCAGAATGCTGCACTGAGAGAGATTGCCCATATAGCAGAAACCATTTCAACTCATGGGTTGGATGATCAACAGTTACAATCTGTCACAAGAATCCGATATATTACTTATGAATGCCTGAGGGATCAGATTGCAAGTACAGTATTTGTTGCATCAAACTCACAAAGTGAAGCTGGAAAGAAAGTACGTGGAAAGGAGAGAGTAAGAAGGAAGGGGATGGGCAAACGTAAGCGTAAAGAAGAGGTAGACCAATATTATGCAGCAGGGATACCCATGCAACATCGGATACCTGCTACAGCTTTTGATGTTGATCCTTCTCACCTATATCACATCGGCAATGAGATGGACAATCCTCATTTGTGCATTACAGTAAGTGAAGATGATCATGGTCGGATATCTCACGTAGCTCAAAGTGTCGATGATATTGATTTCTGTGAAG-ATGCTAAGGAAGTTGATGAATCACACTTCCATCATCTAGTTGGAGAACAAGATGACCATCTCTCCAGTGAAGTAGCAGAAGATAAACCTCATGC</genome_strand>
        <mrna_strand>AAGATGTTGAGGAAAGTGAATACATGCAGTGGTATATGAGAATTACAAGGAAGTTGGTTGGGAGGCCTGTACCTATCTCATCTGAGTTTCAAAGAATG..................................................................................................................................AATGCTGCACTTCGAGAGATTGCCCATATAGCAGACACCATTTCAACTCATGGGTTGGATGATCAACAGTTACAATCTGTCACAAGAATCCGATATATTACTTATGAATGCCTGAGGGATCAGATTGCAAGTACAGTAGTTGTTGCATCGAACTCACAAAGTGAAGTCGGAAAGAAAGTACGTGGAAAGGAGAGAGTAAGAAGGAAGGGGATGGGCAAACGTAAGCGTAAAGAAGAGGTAGAGCAATATTATGCCGCAGGGATACCCATGCAACATCGGATACCTGCTACAACTTTTGATGTTGATCCTTCTCATCTATATCACATCGGCAATGAGATGGATAATCCTCATTTGTGCATTACAGTAAGTGAAGATGATCATGGTCGGATATCTCATGTGGCTCATAGTGTCGATGATATTGATTTCTGTGAAGAATGCT-AGGAAGTTGATGAATCACACTTCCATCATTTAGTTGGAGAGCAAGATGGCCATCTCTCCAGTGAAGTAGCAGAAGATAAACCTCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248021" ref_strand="+" ref_description="SGN-E248021 [cLEF-47-G24]">
      <seq>ttcaacggatggtaaattatcagatatatgtaactcaggagtatttttttttcttcaatttttcagttatccaacatctgctctctcactttgagtcatgcctttgatttttcactatagtctgtttatttgtcactgcagaatgctgcactgagagagattgcccatatagcagaaaccatttcaactcatgggttggatgatcaacagttacaatctgtcacaagaatccgatatattacttatgaatgcctgagggatcagattgcaagtacagtatttgttgcatcaaactcacaaagtgaagctggaaagaaagtacgtggaaaggagagagtaagaaggaaggggatgggcaaacgtaagcgtaaagaagaggtagaccaatattatgcagcagggatacccatgcaacatcggatacctgctacagcttttgatgttgatccttctcacctatatcacatcggcaatgagatggacaatcctcatttgtgcattacagtaagtgaagatgatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="25935" stop="24814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25635" g_stop="25114" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E248021" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25635" e_stop="25114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACGGATGGTAAATTATCAGATATATGTAACTCAGGATTATTTTTTTTTCTTCAATTTTTCAGTTATCCAACATCTGCTCTCTCACTTTGAGTCATGCCTTTGATTTTTCACTATAGTCTGTTTATTTGTCACTGCAGAATGCTGCACTGAGAGAGATTGCCCATATAGCAGAAACCATTTCAACTCATGGGTTGGATGATCAACAGTTACAATCTGTCACAAGAATCCGATATATTACTTATGAATGCCTGAGGGATCAGATTGCAAGTACAGTATTTGTTGCATCAAACTCACAAAGTGAAGCTGGAAAGAAAGTACGTGGAAAGGAGAGAGTAAGAAGGAAGGGGATGGGCAAACGTAAGCGTAAAGAAGAGGTAGACCAATATTATGCAGCAGGGATACCCATGCAACATCGGATACCTGCTACAGCTTTTGATGTTGATCCTTCTCACCTATATCACATCGGCAATGAGATGGACAATCCTCATTTGTGCATTACAGTAAGTGAAGATGATCAT</genome_strand>
        <mrna_strand>TTCAACGGATGGTAAATTATCAGATATATGTAACTCAGGAGTATTTTTTTTTCTTCAATTTTTCAGTTATCCAACATCTGCTCTCTCACTTTGAGTCATGCCTTTGATTTTTCACTATAGTCTGTTTATTTGTCACTGCAGAATGCTGCACTGAGAGAGATTGCCCATATAGCAGAAACCATTTCAACTCATGGGTTGGATGATCAACAGTTACAATCTGTCACAAGAATCCGATATATTACTTATGAATGCCTGAGGGATCAGATTGCAAGTACAGTATTTGTTGCATCAAACTCACAAAGTGAAGCTGGAAAGAAAGTACGTGGAAAGGAGAGAGTAAGAAGGAAGGGGATGGGCAAACGTAAGCGTAAAGAAGAGGTAGACCAATATTATGCAGCAGGGATACCCATGCAACATCGGATACCTGCTACAGCTTTTGATGTTGATCCTTCTCACCTATATCACATCGGCAATGAGATGGACAATCCTCATTTGTGCATTACAGTAAGTGAAGATGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701784" ref_strand="+" ref_description="SGN-E701784 [FA16DG06]">
      <seq>ctcttgtagtgctggagttactaccacctcaatgttggtcggccaaagcttaatcatgatccaatccatgagtgtttcccatttgtgcttaggtggaaaggtaaacaaagcagtccaacgtcaaaccgtgatgtggcattctaccgaaaatcattggactctatgaagccatctgatgttgactggtgtccttactcaaacattagtcataccgtcataccagaacatatattgcgcagcctcattctggggagatcaaagaccatgttgatatgttatgacaaggcagaaagacaccttccagatcgttgcctacggcaatttggcatgcatcagactgttcccgaagaggtacagaaatgggagaggaagagtcgaggagttgatggtggtgtagatctctcaacaaaaatggaatcagagcttaatgaatggtcaaatcgacatctctacattgtggaggcagaggaagatgttgaggaaagtgaatacatgcagtggtatatgagaattacaaggaagttggttgggaggcctgtacctatctcatctgagtttcaacggatggtaaattatcagatatatgtaactcaggattatttttttttcttcaatttttcagttatccaacatctgctctctcactttgagtcatgcctttgatttttcactatagtctgtttatttgtcactgcaaaatgctgcactgagagagattgcccatataacagaaaccatttcaactcatgggttggatgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="26577" stop="25130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26277" g_stop="26101" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26100" i_stop="26015" i_length="86">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26014" g_stop="25430" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="762" r_length="585" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E701784" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26277" e_stop="26101"/>
          <exon e_start="26014" e_stop="25430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTGCAGTGCTGGAGTTACTACCACCTCAATGTTGGTCGGCCAAAGCTTAATCATGATCCAATCCATGAGTGTTTCCCATTTGTGCTTAGGTGGAAAGGTAAACAAAGCAGTCCAACGTCAAACCGTGATGTGGCATTCTACCGAAAATCATTGGACTCTATGAAGCCATCTGATGTGAGTTAGTTTCTGTAACTTTCTTGTGTTACTTAAATCGTTTATCTCTTAAAGAGCTTAAGAAAATGGAACAATTCTACGTCCAGGTTGACTGGTGTCCTTACTCAAACATTAGTCATACCGTCATACCAGAACATATATTGCGCAGCCTCATTCTGGGGAGATCAAAGACCATGTTGATATGTTATGACAAGGCAGAAAGACACCTTCCAGATCGTTGCCTACGGCAATTTGGCATGCATCAGACTGTTCCCGAAGAGGTACAGAAATGGGAGAGGAAGAGTCGAGGAGTTGATGGTGGTGTAGATCTCTCAACAAAAATGGAATCAGAGCTTAATGAATGGTCAAATCGACATCTCTACATTGTGGAGGCAGAGGAAGATGTTGAGGAAAGTGAATACATGCAGTGGTATATGAGAATTACAAGGAAGTTGGTTGGGAGGCCTGTACCTATCTCATCTGAGTTTCAACGGATGGTAAATTATCAGATATATGTAACTCAGGATTATTTTTTTTTCTTCAATTTTTCAGTTATCCAACATCTGCTCTCTCACTTTGAGTCATGCCTTTGATTTTTCACTATAGTCTGTTTATTTGTCACTGCAGAATGCTGCACTGAGAGAGATTGCCCATATAGCAGAAACCATTTCAACTCATGGGTTGGATGATCA</genome_strand>
        <mrna_strand>CTCTTGTAGTGCTGGAGTTACTACCACCTCAATGTTGGTCGGCCAAAGCTTAATCATGATCCAATCCATGAGTGTTTCCCATTTGTGCTTAGGTGGAAAGGTAAACAAAGCAGTCCAACGTCAAACCGTGATGTGGCATTCTACCGAAAATCATTGGACTCTATGAAGCCATCTGAT......................................................................................GTTGACTGGTGTCCTTACTCAAACATTAGTCATACCGTCATACCAGAACATATATTGCGCAGCCTCATTCTGGGGAGATCAAAGACCATGTTGATATGTTATGACAAGGCAGAAAGACACCTTCCAGATCGTTGCCTACGGCAATTTGGCATGCATCAGACTGTTCCCGAAGAGGTACAGAAATGGGAGAGGAAGAGTCGAGGAGTTGATGGTGGTGTAGATCTCTCAACAAAAATGGAATCAGAGCTTAATGAATGGTCAAATCGACATCTCTACATTGTGGAGGCAGAGGAAGATGTTGAGGAAAGTGAATACATGCAGTGGTATATGAGAATTACAAGGAAGTTGGTTGGGAGGCCTGTACCTATCTCATCTGAGTTTCAACGGATGGTAAATTATCAGATATATGTAACTCAGGATTATTTTTTTTTCTTCAATTTTTCAGTTATCCAACATCTGCTCTCTCACTTTGAGTCATGCCTTTGATTTTTCACTATAGTCTGTTTATTTGTCACTGCAAAATGCTGCACTGAGAGAGATTGCCCATATAACAGAAACCATTTCAACTCATGGGTTGGATGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448866" ref_strand="+" ref_description="SGN-E448866 [cSTS-4-N21]">
      <seq>ggagcgtggtgctcttaggtgccatgagcacacatcaaagctcgatcagtggatgctcacagagaaacaggttgagttggttaaaatggctggatttggttatttgagaatgataccggcaatcagtttggataacccactcatatctgccctagttgagagatggaggagagaaacaaacacattccatttcactgttggggaaatgactgttacccttgaggatgtcgcgtacttgcttgggctaccagttgatggtgaggctgttataggtgtgacatacacttcatgtgaagcagtctgtatcaaattgttgggaaaagcacctgactctggatataccagtggtgggatggtgaagcttagttggttgaaagagaccttctcccagtgtccggaggatgcttccatggaggatattgcgcgttgtacacgtgcttatcttctttacctggtcggtagcaccatcttttcaactacaactggcaataaagtacctgtcatgtaccttccactgtttgaaaattttgatgaagctggcaagtatgcttggggtgctgcagcattatccttcttgtacagagcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="27363" stop="26176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27063" g_stop="26476" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E448866" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27063" e_stop="26476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCGTGGTGCTCTTAGGTGCCATGAGCACACATCAAAGCTCGATCAGTGGATGCTCACAGAGAAACAGGTTGAGTTGGTTAAAATGGCTGGATTTGGCTATTTGAGAATGATACCGGCAATCAGTTTGGATAACCCACTCATATCTTCCCTAGTTGAGAGATGGAGAAGAGAAACAAACACATTCCATTTCACTGTTGGGGAAATGACTGTTACCCTTGAGGATGTCGCGTACTTGCTTGGGCTACCAGTTGATGGTGAGGCTGTTATAGGTGTGACATATACTTCATGTGAAGCAGTCTGTATCAAATTGTTGGGGAAAGCACCTGACTCTGGATATACGAGTGGTGGGATGGTGAAGCTTAGTTGGTTAAAAGAGACCTTCTCCCAGTGTCCGGAGGATGCTTCCATGGAGGATATTGCTCGTTGTACACGTGCTTATCTTCTTTACCTGGTTGGTAGCACCATCTTTTCAACTACAACTGGCAATAAAGTACCTGTCATGTACCTTCCACTGTTCGAAAATTTTGATGAAGCTGGCAAGTATGCTTGGGGTGCTGCAGCATTATCCTTCTTGTACAGAGCACT</genome_strand>
        <mrna_strand>GGAGCGTGGTGCTCTTAGGTGCCATGAGCACACATCAAAGCTCGATCAGTGGATGCTCACAGAGAAACAGGTTGAGTTGGTTAAAATGGCTGGATTTGGTTATTTGAGAATGATACCGGCAATCAGTTTGGATAACCCACTCATATCTGCCCTAGTTGAGAGATGGAGGAGAGAAACAAACACATTCCATTTCACTGTTGGGGAAATGACTGTTACCCTTGAGGATGTCGCGTACTTGCTTGGGCTACCAGTTGATGGTGAGGCTGTTATAGGTGTGACATACACTTCATGTGAAGCAGTCTGTATCAAATTGTTGGGAAAAGCACCTGACTCTGGATATACCAGTGGTGGGATGGTGAAGCTTAGTTGGTTGAAAGAGACCTTCTCCCAGTGTCCGGAGGATGCTTCCATGGAGGATATTGCGCGTTGTACACGTGCTTATCTTCTTTACCTGGTCGGTAGCACCATCTTTTCAACTACAACTGGCAATAAAGTACCTGTCATGTACCTTCCACTGTTTGAAAATTTTGATGAAGCTGGCAAGTATGCTTGGGGTGCTGCAGCATTATCCTTCTTGTACAGAGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395380" ref_strand="+" ref_description="SGN-E395380 [TUS-16-L11]">
      <seq>accgtattcgtcagtctccctaattgtccccgccgattcccaaaactccaccgacgaccaccgtagctttttctctccggtcgttcttccgtcgatctcttctccggagatcttcttctccgtgcaccattcatctctatctcactcgctccatatatacacacaaatacatacatacatatattatctccctatgggtgtctgataccattggcaatttcctcgacttgctctttttgctgaggtatgtcataagcagtaatggtggactactatgcaactaaccctggaccagttgaggatattgtgctgtacgatcaagataaacatgtatcatctgctgtttgggaggggcaggagcgtggtgctcttaggtgccatgagcacacatcagagctcgatcagtggatgctcacagagaaacaggttgagttggttaaaatggctggatttggctatttgagaatgataccggcaatcagtttggataacccactcatatcttccctagttgagagatggagaagagaaacaaacacattccatttcactgttggggaaatgactgttacccttgaggatgtcgcgtacttgcttgggctaccagttgatggtgaggctgttataggtgtgacatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="29077" stop="26477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28777" g_stop="28536" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28535" i_stop="27281" i_length="1255">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27280" g_stop="27166" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="357" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27165" i_stop="27063" i_length="103">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27062" g_stop="26777" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="643" r_length="286" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E395380" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28777" e_stop="28536"/>
          <exon e_start="27280" e_stop="27166"/>
          <exon e_start="27062" e_stop="26777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGTATTCGTCAGTCTCCCTAATTGTCCCCGCCGATTCCCAAAACTCCACCGACGACCACCGTAGCTTTTTCTCTCCGGTCGTTCTTCCGTCGATCTCTTCTCCGGAGATCTTCTTCTCCGTGCACCATTCATCTCTATCTCACTCGCTCCATATATACACACAAATACATACATACATATATTATCTCCCTATGGGTGTCTGATACCATTGGCAATTTCCTCGACTTGCTCTTTTTGCTGGTACATTTCTCTCTATATATATTTATGTACATTTTTTTCTGTTAAGATTTTTGGTTTTTTTACTTAGGAATATTAGTCACTGTGATTAGATTTAATTTGGGCAATCTGTGTCTGTAATTTTTATTTTTTTTTACAATTTTTTCATCATTTGGTGAGAAGTTTATTTACCACATAATGCTACAGTATCATTTTTTTTAATGTAGTGATTGATATATAATTAACTCTAACTAGTTTGGGGCTGAGCAATAGTTGCTTGATTAATGTATACGTTCTCCTATCTCGTTGAGGTAGAGAATTTGTTTTAAAAAGATCCTCAGCTAAAGTTCAGCAAATCATATTGATTACAGAGAAAGAAATACGGCAGTGGAGAAAACAGGTCGATTAAATACGGAAAGCAGTACAAAGCATCTAGAAAAGGAACTGTAATGGTAACTGAATCGCAAAAGACTACCACAGTCGTTGATTGATTGAATTAGTCAAGGTGCTCACAAGCTAGCTAGACGATATGGTAAGGTAGGAAAATGCTAGTAAAAACAAGTTAAAAACTTGATATTCATGTGCAAATAAGATGAAGTAACTTTTACACTTATTGAAAATTCACGTGGAGATAGCGAAGAACAGAATACGAAAGAATTATGGAAGTAAAGTATCATAGGATGACACTAACTAGTGGGTATTAAGGCTGTTATGTTAGGTGTAGAGTTTAGCATGAGTCTTCTTAGTCCTGTCTGTGATTGTTTGGCATTGCAGTATAGATTTGTGGTTTCGAGAATTCCTAAATCAGAGAAATCCTAGTTTTCCCTTAAAGTTGAATTGTGAAGTAATGAAATGAGACAGACCCAAATGGAGTGGAATGGATATAGAGGAGTCACATAGCTGACTGCATCTAGTTTTGGGTTGAGGCCAGTGTAATAAAAGTCACTGCTTGTTGCTTAAAGCAATCAAACTATGCAAAGTGAGGGGTTATCGTTTCATGTGGGTGGAACCTTGTGATTAAGAGAATTTTGTGCTTCATAGTTCAAACAATGACGCCACAAAGTTATTTGGAATTTCCTTCTCTAGGTACCTTCCCCAAAAACATAAATACTAGCAGGCAGTATCTTGTAAACAAAAGAATAAGTTAACCTTGTAATATAGAGTTGCTGTAATTTTTTTCTTGCATTTGCAACTTTGTGATGCAGTTAAGTTGCATTGTATTTTTCAAATGACACTGCAATTTTTTTCTTAATAGATTGCTAAGTTTGTCTTGTTTCAGAGGTATGTCATAAGCAGTAATGGTGGACTACTATGCAACTAACCCTGGACCAGTTGAGGATATTGTGCTGTACGATCAAGATAAACATGTATCATCTGCTGTTTGGGAGGGGCAGGTATTCACTAAGCTAAACTTCCTCCCTTTTTTTGACAAATCACACTTGACAGCAACTTAGTGTTTTAGACAAGGCTTGAATGGCTTATTTTCACTGTTGACAGGAGCGTGGTGCTCTTAGGTGCCATGAGCACACATCAAAGCTCGATCAGTGGATGCTCACAGAGAAACAGGTTGAGTTGGTTAAAATGGCTGGATTTGGCTATTTGAGAATGATACCGGCAATCAGTTTGGATAACCCACTCATATCTTCCCTAGTTGAGAGATGGAGAAGAGAAACAAACACATTCCATTTCACTGTTGGGGAAATGACTGTTACCCTTGAGGATGTCGCGTACTTGCTTGGGCTACCAGTTGATGGTGAGGCTGTTATAGGTGTGACATATACTT</genome_strand>
        <mrna_strand>ACCGTATTCGTCAGTCTCCCTAATTGTCCCCGCCGATTCCCAAAACTCCACCGACGACCACCGTAGCTTTTTCTCTCCGGTCGTTCTTCCGTCGATCTCTTCTCCGGAGATCTTCTTCTCCGTGCACCATTCATCTCTATCTCACTCGCTCCATATATACACACAAATACATACATACATATATTATCTCCCTATGGGTGTCTGATACCATTGGCAATTTCCTCGACTTGCTCTTTTTGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTATGTCATAAGCAGTAATGGTGGACTACTATGCAACTAACCCTGGACCAGTTGAGGATATTGTGCTGTACGATCAAGATAAACATGTATCATCTGCTGTTTGGGAGGGGCAG.......................................................................................................GAGCGTGGTGCTCTTAGGTGCCATGAGCACACATCAGAGCTCGATCAGTGGATGCTCACAGAGAAACAGGTTGAGTTGGTTAAAATGGCTGGATTTGGCTATTTGAGAATGATACCGGCAATCAGTTTGGATAACCCACTCATATCTTCCCTAGTTGAGAGATGGAGAAGAGAAACAAACACATTCCATTTCACTGTTGGGGAAATGACTGTTACCCTTGAGGATGTCGCGTACTTGCTTGGGCTACCAGTTGATGGTGAGGCTGTTATAGGTGTGACATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444399" ref_strand="+" ref_description="SGN-E444399 [cSTA-42-F2]">
      <seq>cgtcagtctccctaattgtccccgccgattcccaaaactccaccgccgaccaccgcacctttcttctctccgtcgttcttccgtcgatctcttttccggcgatcttcttctccgttcaccattcatctctatctcaatcgctccatatatacacacaaatacatacatatatatgttatctctctatgggtgtctgataccattgcccacttccttgacttgctgtttttgctgagatatgtcataagcagcaatggtggactactatgcaactaatcctggaccaattgaggatattgtgttgtacgatcaagataaacatgtatcatctgctgtttgggaggggcaggagcgtggtgctcttaggtgccatgagcacacatcaaagctcgatcagtggatgctcacagagaaacaggttgagttggttaaaatggctggatttggctatttgagaatgataccggcaatcagtttggataacccactcatatctgccctagttgagagatggaggagagaaacaaacacatttcatttcactgttggggaaatgactgttacccttgaggatgtcgcgtacttgcttgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="29069" stop="26518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28769" g_stop="28536" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28535" i_stop="27281" i_length="1255">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27280" g_stop="27166" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="349" r_length="115" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27165" i_stop="27063" i_length="103">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27062" g_stop="26818" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="594" r_length="245" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E444399" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28769" e_stop="28536"/>
          <exon e_start="27280" e_stop="27166"/>
          <exon e_start="27062" e_stop="26818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAGTCTCCCTAATTGTCCCCGCCGATTCCCAAAACTCCACCGACGACCACCGTAGCTTT-TTCTCTCCGGTCGTTCTTCCGTCGATCTCTTCTCCGGAGATCTTCTTCTCCGTGCACCATTCATCTCTATCTCACTCGCTCCATATATACACACAAATACATACATACATATATTATCTCCCTATGGGTGTCTGATACCATTGGCAATTTCCTCGACTTGCTCTTTTTGCTGGTACATTTCTCTCTATATATATTTATGTACATTTTTTTCTGTTAAGATTTTTGGTTTTTTTACTTAGGAATATTAGTCACTGTGATTAGATTTAATTTGGGCAATCTGTGTCTGTAATTTTTATTTTTTTTTACAATTTTTTCATCATTTGGTGAGAAGTTTATTTACCACATAATGCTACAGTATCATTTTTTTTAATGTAGTGATTGATATATAATTAACTCTAACTAGTTTGGGGCTGAGCAATAGTTGCTTGATTAATGTATACGTTCTCCTATCTCGTTGAGGTAGAGAATTTGTTTTAAAAAGATCCTCAGCTAAAGTTCAGCAAATCATATTGATTACAGAGAAAGAAATACGGCAGTGGAGAAAACAGGTCGATTAAATACGGAAAGCAGTACAAAGCATCTAGAAAAGGAACTGTAATGGTAACTGAATCGCAAAAGACTACCACAGTCGTTGATTGATTGAATTAGTCAAGGTGCTCACAAGCTAGCTAGACGATATGGTAAGGTAGGAAAATGCTAGTAAAAACAAGTTAAAAACTTGATATTCATGTGCAAATAAGATGAAGTAACTTTTACACTTATTGAAAATTCACGTGGAGATAGCGAAGAACAGAATACGAAAGAATTATGGAAGTAAAGTATCATAGGATGACACTAACTAGTGGGTATTAAGGCTGTTATGTTAGGTGTAGAGTTTAGCATGAGTCTTCTTAGTCCTGTCTGTGATTGTTTGGCATTGCAGTATAGATTTGTGGTTTCGAGAATTCCTAAATCAGAGAAATCCTAGTTTTCCCTTAAAGTTGAATTGTGAAGTAATGAAATGAGACAGACCCAAATGGAGTGGAATGGATATAGAGGAGTCACATAGCTGACTGCATCTAGTTTTGGGTTGAGGCCAGTGTAATAAAAGTCACTGCTTGTTGCTTAAAGCAATCAAACTATGCAAAGTGAGGGGTTATCGTTTCATGTGGGTGGAACCTTGTGATTAAGAGAATTTTGTGCTTCATAGTTCAAACAATGACGCCACAAAGTTATTTGGAATTTCCTTCTCTAGGTACCTTCCCCAAAAACATAAATACTAGCAGGCAGTATCTTGTAAACAAAAGAATAAGTTAACCTTGTAATATAGAGTTGCTGTAATTTTTTTCTTGCATTTGCAACTTTGTGATGCAGTTAAGTTGCATTGTATTTTTCAAATGACACTGCAATTTTTTTCTTAATAGATTGCTAAGTTTGTCTTGTTTCAGAGGTATGTCATAAGCAGTAATGGTGGACTACTATGCAACTAACCCTGGACCAGTTGAGGATATTGTGCTGTACGATCAAGATAAACATGTATCATCTGCTGTTTGGGAGGGGCAGGTATTCACTAAGCTAAACTTCCTCCCTTTTTTTGACAAATCACACTTGACAGCAACTTAGTGTTTTAGACAAGGCTTGAATGGCTTATTTTCACTGTTGACAGGAGCGTGGTGCTCTTAGGTGCCATGAGCACACATCAAAGCTCGATCAGTGGATGCTCACAGAGAAACAGGTTGAGTTGGTTAAAATGGCTGGATTTGGCTATTTGAGAATGATACCGGCAATCAGTTTGGATAACCCACTCATATCTTCCCTAGTTGAGAGATGGAGAAGAGAAACAAACACATTCCATTTCACTGTTGGGGAAATGACTGTTACCCTTGAGGATGTCGCGTACTTGCTTGGGCT</genome_strand>
        <mrna_strand>CGTCAGTCTCCCTAATTGTCCCCGCCGATTCCCAAAACTCCACCGCCGACCACCGCACCTTTCTTCTCTCC-GTCGTTCTTCCGTCGATCTCTTTTCCGGCGATCTTCTTCTCCGTTCACCATTCATCTCTATCTCAATCGCTCCATATATACACACAAATACATACATATATATGTTATCTCTCTATGGGTGTCTGATACCATTGCCCACTTCCTTGACTTGCTGTTTTTGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATATGTCATAAGCAGCAATGGTGGACTACTATGCAACTAATCCTGGACCAATTGAGGATATTGTGTTGTACGATCAAGATAAACATGTATCATCTGCTGTTTGGGAGGGGCAG.......................................................................................................GAGCGTGGTGCTCTTAGGTGCCATGAGCACACATCAAAGCTCGATCAGTGGATGCTCACAGAGAAACAGGTTGAGTTGGTTAAAATGGCTGGATTTGGCTATTTGAGAATGATACCGGCAATCAGTTTGGATAACCCACTCATATCTGCCCTAGTTGAGAGATGGAGGAGAGAAACAAACACATTTCATTTCACTGTTGGGGAAATGACTGTTACCCTTGAGGATGTCGCGTACTTGCTTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443560" ref_strand="+" ref_description="SGN-E443560 [cSTA-38-L4]">
      <seq>gtattcgccagtctccctaattgttcccgccgattcccaaaaggccaccgccgacgcaccgcagttttttctctccgtcgttcttccgtcgatctcttccccggcgatcctcttccccgttcaccattcatctctatctcaatcgctccatatatacacacacaaatacatacacatttatgttatctctctatgggtgtctgataccattgcccatttccttgacttgctgtttttgctgtttttcttgtttcagagatatgtcataagcagcaatggtggactactatgcaactaatcctggaccaattgaggatattgtgttgtacgatcaagataaacatgtatcatctgctgtttgggaggggcaggagcgtggtgctcttaggtgccatgagcacacatcaaagctcgatcagtggatgctcacagagaaacaggttgagttggttaaaatggctggatttggctatttgagaatgataccggcaatcagtttggataacccactcatatctgccctagttgagagatggaggagagaaacaaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="29074" stop="26580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28774" g_stop="28536" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28535" i_stop="27296" i_length="1240">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27295" g_stop="27166" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="371" r_length="130" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27165" i_stop="27063" i_length="103">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27062" g_stop="26880" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="554" r_length="183" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E443560" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28774" e_stop="28536"/>
          <exon e_start="27295" e_stop="27166"/>
          <exon e_start="27062" e_stop="26880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTCGTCAGTCTCCCTAATTGTCCCCGCCGATTCCCAAAACTCCACCGACGAC-CACCGTAGCTTTTTCTCTCCGGTCGTTCTTCCGTCGATCTCTTCTCCGGAGATCTTCTTCTCCGTGCACCATTCATCTCTATCTCACTCGCTCCATATAT--ACACACAAATACATACATACATATATTATCTCCCTATGGGTGTCTGATACCATTGGCAATTTCCTCGACTTGCTCTTTTTGCTGGTACATTTCTCTCTATATATATTTATGTACATTTTTTTCTGTTAAGATTTTTGGTTTTTTTACTTAGGAATATTAGTCACTGTGATTAGATTTAATTTGGGCAATCTGTGTCTGTAATTTTTATTTTTTTTTACAATTTTTTCATCATTTGGTGAGAAGTTTATTTACCACATAATGCTACAGTATCATTTTTTTTAATGTAGTGATTGATATATAATTAACTCTAACTAGTTTGGGGCTGAGCAATAGTTGCTTGATTAATGTATACGTTCTCCTATCTCGTTGAGGTAGAGAATTTGTTTTAAAAAGATCCTCAGCTAAAGTTCAGCAAATCATATTGATTACAGAGAAAGAAATACGGCAGTGGAGAAAACAGGTCGATTAAATACGGAAAGCAGTACAAAGCATCTAGAAAAGGAACTGTAATGGTAACTGAATCGCAAAAGACTACCACAGTCGTTGATTGATTGAATTAGTCAAGGTGCTCACAAGCTAGCTAGACGATATGGTAAGGTAGGAAAATGCTAGTAAAAACAAGTTAAAAACTTGATATTCATGTGCAAATAAGATGAAGTAACTTTTACACTTATTGAAAATTCACGTGGAGATAGCGAAGAACAGAATACGAAAGAATTATGGAAGTAAAGTATCATAGGATGACACTAACTAGTGGGTATTAAGGCTGTTATGTTAGGTGTAGAGTTTAGCATGAGTCTTCTTAGTCCTGTCTGTGATTGTTTGGCATTGCAGTATAGATTTGTGGTTTCGAGAATTCCTAAATCAGAGAAATCCTAGTTTTCCCTTAAAGTTGAATTGTGAAGTAATGAAATGAGACAGACCCAAATGGAGTGGAATGGATATAGAGGAGTCACATAGCTGACTGCATCTAGTTTTGGGTTGAGGCCAGTGTAATAAAAGTCACTGCTTGTTGCTTAAAGCAATCAAACTATGCAAAGTGAGGGGTTATCGTTTCATGTGGGTGGAACCTTGTGATTAAGAGAATTTTGTGCTTCATAGTTCAAACAATGACGCCACAAAGTTATTTGGAATTTCCTTCTCTAGGTACCTTCCCCAAAAACATAAATACTAGCAGGCAGTATCTTGTAAACAAAAGAATAAGTTAACCTTGTAATATAGAGTTGCTGTAATTTTTTTCTTGCATTTGCAACTTTGTGATGCAGTTAAGTTGCATTGTATTTTTCAAATGACACTGCAATTTTTTTCTTAATAGATTGCTAAGTTTGTCTTGTTTCAGAGGTATGTCATAAGCAGTAATGGTGGACTACTATGCAACTAACCCTGGACCAGTTGAGGATATTGTGCTGTACGATCAAGATAAACATGTATCATCTGCTGTTTGGGAGGGGCAGGTATTCACTAAGCTAAACTTCCTCCCTTTTTTTGACAAATCACACTTGACAGCAACTTAGTGTTTTAGACAAGGCTTGAATGGCTTATTTTCACTGTTGACAGGAGCGTGGTGCTCTTAGGTGCCATGAGCACACATCAAAGCTCGATCAGTGGATGCTCACAGAGAAACAGGTTGAGTTGGTTAAAATGGCTGGATTTGGCTATTTGAGAATGATACCGGCAATCAGTTTGGATAACCCACTCATATCTTCCCTAGTTGAGAGATGGAGAAGAGAAACAAACACA</genome_strand>
        <mrna_strand>GTATTCGCCAGTCTCCCTAATTGTTCCCGCCGATTCCCAAAAGGCCACCGCCGACGCACCGCAGTTTTTTCTCTCC-GTCGTTCTTCCGTCGATCTCTTCCCCGGCGATCCTCTTCCCCGTTCACCATTCATCTCTATCTCAATCGCTCCATATATACACACACAAATACATACACATTTATGTTATCTCTCTATGGGTGTCTGATACCATTGCCCATTTCCTTGACTTGCTGTTTTTGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCTTGTTTCAGAGATATGTCATAAGCAGCAATGGTGGACTACTATGCAACTAATCCTGGACCAATTGAGGATATTGTGTTGTACGATCAAGATAAACATGTATCATCTGCTGTTTGGGAGGGGCAG.......................................................................................................GAGCGTGGTGCTCTTAGGTGCCATGAGCACACATCAAAGCTCGATCAGTGGATGCTCACAGAGAAACAGGTTGAGTTGGTTAAAATGGCTGGATTTGGCTATTTGAGAATGATACCGGCAATCAGTTTGGATAACCCACTCATATCTGCCCTAGTTGAGAGATGGAGGAGAGAAACAAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330744" ref_strand="+" ref_description="SGN-E330744 [cTOD-8-P11]">
      <seq>tacgacaccgtattcgtcagtctccctaattgtccccgccgattcccaaaactccaccgacgaccaccgtagctttttctctccggtcgttcttccgtcgatctcttctccggagatcttcttctccgtgcaccattcatctctatctcactcgctccatatatacacacaaatacatacatacatatattatctccctatgggtgtctgataccattggcaatttcctcgacttgctctttttgctgaggtatgtcataagcagtaatggtggactactatgcaactaaccctggaccagttgaggatattgtgctgtacgatcaagataaacatgtatcatctgctgtttgggaggggcaggagcgtggtgctcttaggtgccatgagcacacatcaaagctcgatcagtggatgctcacagagaaacaggttgagttggttaaaatggctggatttggctatttgagaatgataccggcaatcagtttggataacccactcatatcttccctagttgagagatggagaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="29083" stop="26591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28783" g_stop="28536" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28535" i_stop="27281" i_length="1255">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27280" g_stop="27166" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="363" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27165" i_stop="27063" i_length="103">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27062" g_stop="26891" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="535" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E330744" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28783" e_stop="28536"/>
          <exon e_start="27280" e_stop="27166"/>
          <exon e_start="27062" e_stop="26891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGACACCGTATTCGTCAGTCTCCCTAATTGTCCCCGCCGATTCCCAAAACTCCACCGACGACCACCGTAGCTTTTTCTCTCCGGTCGTTCTTCCGTCGATCTCTTCTCCGGAGATCTTCTTCTCCGTGCACCATTCATCTCTATCTCACTCGCTCCATATATACACACAAATACATACATACATATATTATCTCCCTATGGGTGTCTGATACCATTGGCAATTTCCTCGACTTGCTCTTTTTGCTGGTACATTTCTCTCTATATATATTTATGTACATTTTTTTCTGTTAAGATTTTTGGTTTTTTTACTTAGGAATATTAGTCACTGTGATTAGATTTAATTTGGGCAATCTGTGTCTGTAATTTTTATTTTTTTTTACAATTTTTTCATCATTTGGTGAGAAGTTTATTTACCACATAATGCTACAGTATCATTTTTTTTAATGTAGTGATTGATATATAATTAACTCTAACTAGTTTGGGGCTGAGCAATAGTTGCTTGATTAATGTATACGTTCTCCTATCTCGTTGAGGTAGAGAATTTGTTTTAAAAAGATCCTCAGCTAAAGTTCAGCAAATCATATTGATTACAGAGAAAGAAATACGGCAGTGGAGAAAACAGGTCGATTAAATACGGAAAGCAGTACAAAGCATCTAGAAAAGGAACTGTAATGGTAACTGAATCGCAAAAGACTACCACAGTCGTTGATTGATTGAATTAGTCAAGGTGCTCACAAGCTAGCTAGACGATATGGTAAGGTAGGAAAATGCTAGTAAAAACAAGTTAAAAACTTGATATTCATGTGCAAATAAGATGAAGTAACTTTTACACTTATTGAAAATTCACGTGGAGATAGCGAAGAACAGAATACGAAAGAATTATGGAAGTAAAGTATCATAGGATGACACTAACTAGTGGGTATTAAGGCTGTTATGTTAGGTGTAGAGTTTAGCATGAGTCTTCTTAGTCCTGTCTGTGATTGTTTGGCATTGCAGTATAGATTTGTGGTTTCGAGAATTCCTAAATCAGAGAAATCCTAGTTTTCCCTTAAAGTTGAATTGTGAAGTAATGAAATGAGACAGACCCAAATGGAGTGGAATGGATATAGAGGAGTCACATAGCTGACTGCATCTAGTTTTGGGTTGAGGCCAGTGTAATAAAAGTCACTGCTTGTTGCTTAAAGCAATCAAACTATGCAAAGTGAGGGGTTATCGTTTCATGTGGGTGGAACCTTGTGATTAAGAGAATTTTGTGCTTCATAGTTCAAACAATGACGCCACAAAGTTATTTGGAATTTCCTTCTCTAGGTACCTTCCCCAAAAACATAAATACTAGCAGGCAGTATCTTGTAAACAAAAGAATAAGTTAACCTTGTAATATAGAGTTGCTGTAATTTTTTTCTTGCATTTGCAACTTTGTGATGCAGTTAAGTTGCATTGTATTTTTCAAATGACACTGCAATTTTTTTCTTAATAGATTGCTAAGTTTGTCTTGTTTCAGAGGTATGTCATAAGCAGTAATGGTGGACTACTATGCAACTAACCCTGGACCAGTTGAGGATATTGTGCTGTACGATCAAGATAAACATGTATCATCTGCTGTTTGGGAGGGGCAGGTATTCACTAAGCTAAACTTCCTCCCTTTTTTTGACAAATCACACTTGACAGCAACTTAGTGTTTTAGACAAGGCTTGAATGGCTTATTTTCACTGTTGACAGGAGCGTGGTGCTCTTAGGTGCCATGAGCACACATCAAAGCTCGATCAGTGGATGCTCACAGAGAAACAGGTTGAGTTGGTTAAAATGGCTGGATTTGGCTATTTGAGAATGATACCGGCAATCAGTTTGGATAACCCACTCATATCTTCCCTAGTTGAGAGATGGAGAAGAG</genome_strand>
        <mrna_strand>TACGACACCGTATTCGTCAGTCTCCCTAATTGTCCCCGCCGATTCCCAAAACTCCACCGACGACCACCGTAGCTTTTTCTCTCCGGTCGTTCTTCCGTCGATCTCTTCTCCGGAGATCTTCTTCTCCGTGCACCATTCATCTCTATCTCACTCGCTCCATATATACACACAAATACATACATACATATATTATCTCCCTATGGGTGTCTGATACCATTGGCAATTTCCTCGACTTGCTCTTTTTGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTATGTCATAAGCAGTAATGGTGGACTACTATGCAACTAACCCTGGACCAGTTGAGGATATTGTGCTGTACGATCAAGATAAACATGTATCATCTGCTGTTTGGGAGGGGCAG.......................................................................................................GAGCGTGGTGCTCTTAGGTGCCATGAGCACACATCAAAGCTCGATCAGTGGATGCTCACAGAGAAACAGGTTGAGTTGGTTAAAATGGCTGGATTTGGCTATTTGAGAATGATACCGGCAATCAGTTTGGATAACCCACTCATATCTTCCCTAGTTGAGAGATGGAGAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206539" ref_strand="+" ref_description="SGN-E206539 [cLEC-23-J8]">
      <seq>ccgtattcttcagtctccctaattgtccccgccgagtcccaaaactccaccggcgaccaccgtagctttttctctccggtcgttcttccgtcgatctcttctccggagatcttcttctccgtgcaccattcatctctatctcactcgctccatatatacacacaaatacatacatacatatattatctccctatgggtgtctgataccattggcaatttcctcgacttgctctttttgctgaggtatgtcataagcagtaatggtggactactatgcaactaaccctggaccagttgaggatattgtgctgtacgatcaagataaacatgtttcatctgctgtttgggagggggcaggagcgtggtgctcttaagtgccatgagcacacatcaaagctcgatcagtggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="29076" stop="26708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28776" g_stop="28536" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28535" i_stop="27281" i_length="1255">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27280" g_stop="27166" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="357" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27165" i_stop="27063" i_length="103">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27062" g_stop="27008" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="412" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E206539" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28776" e_stop="28536"/>
          <exon e_start="27280" e_stop="27166"/>
          <exon e_start="27062" e_stop="27008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTATTCGTCAGTCTCCCTAATTGTCCCCGCCGATTCCCAAAACTCCACCGACGACCACCGTAGCTTTTTCTCTCCGGTCGTTCTTCCGTCGATCTCTTCTCCGGAGATCTTCTTCTCCGTGCACCATTCATCTCTATCTCACTCGCTCCATATATACACACAAATACATACATACATATATTATCTCCCTATGGGTGTCTGATACCATTGGCAATTTCCTCGACTTGCTCTTTTTGCTGGTACATTTCTCTCTATATATATTTATGTACATTTTTTTCTGTTAAGATTTTTGGTTTTTTTACTTAGGAATATTAGTCACTGTGATTAGATTTAATTTGGGCAATCTGTGTCTGTAATTTTTATTTTTTTTTACAATTTTTTCATCATTTGGTGAGAAGTTTATTTACCACATAATGCTACAGTATCATTTTTTTTAATGTAGTGATTGATATATAATTAACTCTAACTAGTTTGGGGCTGAGCAATAGTTGCTTGATTAATGTATACGTTCTCCTATCTCGTTGAGGTAGAGAATTTGTTTTAAAAAGATCCTCAGCTAAAGTTCAGCAAATCATATTGATTACAGAGAAAGAAATACGGCAGTGGAGAAAACAGGTCGATTAAATACGGAAAGCAGTACAAAGCATCTAGAAAAGGAACTGTAATGGTAACTGAATCGCAAAAGACTACCACAGTCGTTGATTGATTGAATTAGTCAAGGTGCTCACAAGCTAGCTAGACGATATGGTAAGGTAGGAAAATGCTAGTAAAAACAAGTTAAAAACTTGATATTCATGTGCAAATAAGATGAAGTAACTTTTACACTTATTGAAAATTCACGTGGAGATAGCGAAGAACAGAATACGAAAGAATTATGGAAGTAAAGTATCATAGGATGACACTAACTAGTGGGTATTAAGGCTGTTATGTTAGGTGTAGAGTTTAGCATGAGTCTTCTTAGTCCTGTCTGTGATTGTTTGGCATTGCAGTATAGATTTGTGGTTTCGAGAATTCCTAAATCAGAGAAATCCTAGTTTTCCCTTAAAGTTGAATTGTGAAGTAATGAAATGAGACAGACCCAAATGGAGTGGAATGGATATAGAGGAGTCACATAGCTGACTGCATCTAGTTTTGGGTTGAGGCCAGTGTAATAAAAGTCACTGCTTGTTGCTTAAAGCAATCAAACTATGCAAAGTGAGGGGTTATCGTTTCATGTGGGTGGAACCTTGTGATTAAGAGAATTTTGTGCTTCATAGTTCAAACAATGACGCCACAAAGTTATTTGGAATTTCCTTCTCTAGGTACCTTCCCCAAAAACATAAATACTAGCAGGCAGTATCTTGTAAACAAAAGAATAAGTTAACCTTGTAATATAGAGTTGCTGTAATTTTTTTCTTGCATTTGCAACTTTGTGATGCAGTTAAGTTGCATTGTATTTTTCAAATGACACTGCAATTTTTTTCTTAATAGATTGCTAAGTTTGTCTTGTTTCAGAGGTATGTCATAAGCAGTAATGGTGGACTACTATGCAACTAACCCTGGACCAGTTGAGGATATTGTGCTGTACGATCAAGATAAACATGTATCATCTGCTGTTTGGGA-GGGGCAGGTATTCACTAAGCTAAACTTCCTCCCTTTTTTTGACAAATCACACTTGACAGCAACTTAGTGTTTTAGACAAGGCTTGAATGGCTTATTTTCACTGTTGACAGGAGCGTGGTGCTCTTAGGTGCCATGAGCACACATCAAAGCTCGATCAGTGGATGC</genome_strand>
        <mrna_strand>CCGTATTCTTCAGTCTCCCTAATTGTCCCCGCCGAGTCCCAAAACTCCACCGGCGACCACCGTAGCTTTTTCTCTCCGGTCGTTCTTCCGTCGATCTCTTCTCCGGAGATCTTCTTCTCCGTGCACCATTCATCTCTATCTCACTCGCTCCATATATACACACAAATACATACATACATATATTATCTCCCTATGGGTGTCTGATACCATTGGCAATTTCCTCGACTTGCTCTTTTTGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTATGTCATAAGCAGTAATGGTGGACTACTATGCAACTAACCCTGGACCAGTTGAGGATATTGTGCTGTACGATCAAGATAAACATGTTTCATCTGCTGTTTGGGAGGGGGCAG.......................................................................................................GAGCGTGGTGCTCTTAAGTGCCATGAGCACACATCAAAGCTCGATCAGTGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323172" ref_strand="+" ref_description="SGN-E323172 [cTOB-28-P18]">
      <seq>tttccatacacagaaaaaagctttcaaagtttagctgcaccgatttcgattctcagtttctacagttttataagtgtatcagacgagtatggaatccaacaggggcaaccaaaatggaattcaacaacttttaggtgcagagcaagaagctcaacacattgtcaatgctgccaggagtgcaaaacaggctagattgaaacaggcaaaggatgaagctgagaaggagatagctgaatttcgtgcattcatggaggccgagttccagagaaagcttgaacagactagcggtgattcgggtgctaatgtcaaacgtcttgatcaagaaacgtttgcaaagatccaacacttgaaagcagaatctgaaagcatctccaacgatgttgtccagatgcttctgaggcaggtaaccacagtaaagaactaagattcatctctgaatgattaccaggatcaagtttatggtcattttctgctgattcttggttctccataattctggttttcttgctacaccagtttaatggttgttctccattttgtgttgtatatttatttatcactattggtcatcttggccctagttgaataaaataaatcatatactgatgttctatgaagacaaattttggatataacttacccacacaatgtgattatttcccgaatgaatgaaatacgtgttatgcantaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="29404" stop="34599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29704" g_stop="29768" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29769" i_stop="32255" i_length="2487">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32256" g_stop="32369" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="179" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32370" i_stop="33058" i_length="689">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33059" g_stop="33159" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="280" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33160" i_stop="33888" i_length="729">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33889" g_stop="34296" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="688" r_length="408" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="690" polyA_stop="707"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E323172" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29704" e_stop="29768"/>
          <exon e_start="32256" e_stop="32369"/>
          <exon e_start="33059" e_stop="33159"/>
          <exon e_start="33889" e_stop="34296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCATACACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAGGTATTATTGAGGTTTTTTCCGATCATAATATGCTGATTTCAGCTTGAATTGATTAGATCTGGATCAGATGATTGTTTTGACTAATTTTGATATGGGATTCTTCTGAATTTGAAGTACATTTTTGTTTCTGTTGAATAATTTGAGGTTTATGTGAGATTCACAAGCAAATAATGAGTTATAGAAGGTTTTGGAGTTGGTTTGACTTGTGTCGTCAATGTGAAAGTATTCGGAGTTGTGATTAAAGCGGAATGTAGTTGATTCTAACTAGTTTGGAGTTGATGTTTATCTGTTTAGGTGATTGATTGACTTGCTTCTGGAAAAATTGCTTCAGTTTTAGAGCTGAGTGAATTGTTGATAAGGATTATATTGTTTTGATGGATCTGGTTTGAATTTGTTTACTCCGCTGTAGATATAATCAACTATTTGGTTTCTGCAAAATGATGAGGTCTATGTGAGCTTCACAAACAATGATGAGTTATAGATGCAGTTGGTTTGACCTTCAATCACTAGTGTATAAGTATTTCAAGTTAAGATTAAAGTAAAACGTAGTTGATTCTAACTAGTTTGGAGTTGAGGTTTAGGTGATTGATTGACTTGTTTATGGGAAATTGGTTTGGATTTAAAGATGATTGAATATTTGATAAGGATATATTGTTTTGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGGTTTCTACAAAATGGTTTGAGATTTATGTGAGCTCTGCAAAATGATTTGAGATCTATGTGAACTCCACAAACAAATATGAGTTAACGTTTTACATTTGGTTGCCTATGAACTTCCAGTGTTAAATTATTAAGAATTGTGATTAAAGCAGAATGTAGTTGATTCTACATAGTTTAGAGTTGTTGTTTAGGTGATTGATTGATTGTTTCTGGAAAAGGTTTCGTTAAAGAGCTGATTGAATTGTTGATAAGGATATATTGTATTAGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGTTTCTGCAAAATGCTTTGAGGTCTATGGTGAGATTCACAAACAATAATGAACTGTAGAAGATTTGCTGTTGGTTGACCTTGAATCGCCAGAGTACAAGTATACAGAATTGCTATTAAAGTGAAATGCTGTTGATTCTAACTAGTCTGGAGTTGAGATTTAGGTGATTGATTGACTTGTTTCTGGAAAATTGGTTGGAATTAGAGCTGATTGAATTTATTGATTAAAATATATTGTTTTGATGATCTGGTTTGAATTTGCTTTCTCCAATTTAGATATAATCAACTATTTGTTTCTGCAAAATGATTTGAGTCTATGTGAGATTCACAAACAAATAATGAGTTATAGAAGGTTTGGCAGTTAGTTTGACCTTGAATCGCCAGTGTGAAAATATTCCGAATTGTGATTAAATCGGAATGTAGCTGACACTAACTAATAGAGTTGAGCTGTAGGTGATTGATAATTTCTGGTAAATATGCTTCAGTTTTAGAGCTGATTGATTTGTTGATAGTGATATCTTTGTGTTGATGGATCTATTATTTCTATAGAACAATTCTAGGAAGAGTAACTTGTGCAGTTTGACTTGGACCAAAAGTAGATGAAGGAGACCAAAGAAGAAAGGAAGGAAACAAAAGTAGAAGAATTTCCTCACTTTTAACTAGAGAAATTGTTGATTGAGTAAAAGATTTTGTATTTTGGGAGGAGAATTGTTTGAGCATAGGCTGTTTGATCCAGTCTTTCCTGATTAAATACCACTCTCCTGTTTGATGATTGAATTTATTGCAACCTCTTTCATCCTGATGTTTAACTTAAATTTCCATGTAGTTAAAAGTTGAAGGAATAGCTTGCTTATTTACCATTGAGCCAAGAATCTTTTTTTCTCCATCAGCTCAAAGCTATAGTGAGGCATCCATTACCTCAACAATCTACCAACTTCAGACCTCATAAGTATTTGACTGGGATATTTTTTCATCCTAGGCCAGGCTATCGCAATAGATTGGGATCTATAGTTAATAAATTATAGGATACCTGAAATTGCAATGACCACCAAAGCTATTACAAGGATATCCTGGCATTTTGCTGCCATAGAATTAGTATCAAAATGTGGTAACATGTGAAGTACATGTGTTCTCGCTGTCCCACTTGCAATCCATCTCCGTTTAGCCTAAAATGTTGGGTACTTCGAAGTTCGGCCTATAAATTTACAACCTGGACTACACGTGAAAAAGATCTTAGTTCAAATCTGATCCTTATATTGAACCATGTTGTAAATGAACTGTTTTTTCTTTTGACATAATACTTATTTTGGTCTTTCCAAAGGCGATAAGTTTTGCATAAAAGCCGTCATGGCTGTTCTTTTTAGCATAGTTTCACAGCATGCTCACATTCTACTGAATAATTTTTTGTTCTGCTTCTCAAATATTATCAATTTCTTTAAGATACATATTTTCTTCTTTGTTGTAGTTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTGGTAATTTATTTCCCTTTTTATGCCTTCAGTTTTCTGATCTTTGAATTGAATTTCTATTAGTTTCACTAATGCAATGATCAGGAAACTCCGGCAACATACATGTACTTATTTCAAGTCATGGGTCCATAGCTAGAATTTTCTCCTTCCACGTAATAACTTTTATTTCCATTGCAGTTCAACTTTTTCCTTCCTGTGTTAGTGTGCATGGTAGATTCCTGTAAGATCACATTTTGGTTAGTATCACTTGACATACACAAATTGCAATTCTAATGTGGGCACTGAGAGTTTGTTTTCAGTCTTAACCAGCTCAGTTCCAATATAAGGGGAAGACTAGATGATTCTCATCTCTAATATGCACTGAATAAGTAAAATGTAATCTGGATGGTTCTCTAGTTCCTACCAATTCACCACTGTGCCTTACTGTTTTACGTAATCTTCCCTTTCTCAACACCGTACTTGTTATTTTGAGCCAACTGCAAGTCTGCAACATAACCAATCAATATGCATTTTGGATGTCACACGCAAAGAGTAATAACTACTGCAGCCAAAAGCTCATTACTTTGTACCTGTTCTTCCCCATGTCTTAACTAATAATATGAGCTGTGTGGCTATTGTATTTCACGGCACCGGCGTTGATATTGATCAGTTCTATAAGCAAGTTCTGAATCCTGACTTGGTTTCAAGTGCAGCAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAGGTAAATAAGAAACAAATAGTTTTTGGGGAAGAAACCAATTTTTCATGCGTCTCTAATTTGAGATTGCATAAAAAAGGGAAATCAATTGAACCCGTATTGTATAATACGTAATGTATAACTAATGAATATATGTACTAGTTATAACTGTGGTGTCTGGACCAGCACAGCTCAACTAATCCATAACAACAGCAACTGCTCTTCAAACCCAAGCTATTTGAGATTGGCTATTTCTTCATGAAATTGACTAGTTTTACAGTTGTTGTCAAACCTACCACAACCCTCCTCTTTATCTTGGCTTGGGACTGCAGACTGCCAGTGTGAGAAAGCTTACACAGGCTGAGTTGCATTCATTTATATGAACTCAAATAACAACATACCCAGTATGGTCCCACAAGTGGGGTATTGGGAGGCTGGGGTAGACGTAGAGCTTACCAGTATGTTTGTGGGGAGTTATATGAACTCGATTATTTTTATTTGAAAAATGAACATTTAAGACCAAAACTAGTGGCTGCATTCTTGATCAGAATTTTTGGTCTGTCTAATAAAGCTCTTATGAATGCACCATAAAGGATGTTGACTAAAAGTATAATCGTCATCTATTTCTTATATCTACTTCCTTTGTTCGTGTGTGTGTGGGGGGGGGGGGGGGGGTTGTTAGGGAAGTAATCGGTTATTCAATTTACTTTACCCTTGATTAAGTATGCTCGTTAATATTAATATTGTCTACAGACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTTTGGATATAACTTACCCACACAATGTGATTATTTCCCGAATGAATGAAATACGTGTTATGCAT</genome_strand>
        <mrna_strand>TTTCCATACACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTTTGGATATAACTTACCCACACAATGTGATTATTTCCCGAATGAATGAAATACGTGTTATGCAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322916" ref_strand="+" ref_description="SGN-E322916 [cTOB-30-O17]">
      <seq>tttccatacacagaaaaaagctttcaaagtttagctgcaccgatttcgattctcagtttctacagttttataagtgtatcagacgagtatggaatccaacaggggcaaccaaaatggaattcaacaacttttaggtgcagagcaagaagctcaacacattgtcaatgctgccaggagtgcaaaacaggctagattgaaacaggcaaaggatgaagctgagaaggagatagctgaatttcgtgcattcatggaggccgagttccagagaaagcttgaacagactagcggtgattcgggtgctaatgtcaaacgtcttgatcaagaaacgtttgcaaagatccaacacttgaaagcagaatctgaaagcatctccaacgatgttgtccagatgcttctgaggcaggtaaccacagtaaagaactaagattcatctctgaatgattaccaggatcaagtttatggtcattttctgctgattcttggttctccataattctggttttcttgctacaccagtttaatggttggtctccattttgtgttgtatatttatttatcactattggtcatcttggccctagttgaataaaaaaatcatatactgatgttctatgaagacaaattttggatataacttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="29404" stop="34549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29704" g_stop="29768" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29769" i_stop="32255" i_length="2487">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32256" g_stop="32369" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="179" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32370" i_stop="33058" i_length="689">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33059" g_stop="33159" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="280" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33160" i_stop="33888" i_length="729">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33889" g_stop="34249" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="640" r_length="360" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E322916" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29704" e_stop="29768"/>
          <exon e_start="32256" e_stop="32369"/>
          <exon e_start="33059" e_stop="33159"/>
          <exon e_start="33889" e_stop="34249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCATACACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAGGTATTATTGAGGTTTTTTCCGATCATAATATGCTGATTTCAGCTTGAATTGATTAGATCTGGATCAGATGATTGTTTTGACTAATTTTGATATGGGATTCTTCTGAATTTGAAGTACATTTTTGTTTCTGTTGAATAATTTGAGGTTTATGTGAGATTCACAAGCAAATAATGAGTTATAGAAGGTTTTGGAGTTGGTTTGACTTGTGTCGTCAATGTGAAAGTATTCGGAGTTGTGATTAAAGCGGAATGTAGTTGATTCTAACTAGTTTGGAGTTGATGTTTATCTGTTTAGGTGATTGATTGACTTGCTTCTGGAAAAATTGCTTCAGTTTTAGAGCTGAGTGAATTGTTGATAAGGATTATATTGTTTTGATGGATCTGGTTTGAATTTGTTTACTCCGCTGTAGATATAATCAACTATTTGGTTTCTGCAAAATGATGAGGTCTATGTGAGCTTCACAAACAATGATGAGTTATAGATGCAGTTGGTTTGACCTTCAATCACTAGTGTATAAGTATTTCAAGTTAAGATTAAAGTAAAACGTAGTTGATTCTAACTAGTTTGGAGTTGAGGTTTAGGTGATTGATTGACTTGTTTATGGGAAATTGGTTTGGATTTAAAGATGATTGAATATTTGATAAGGATATATTGTTTTGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGGTTTCTACAAAATGGTTTGAGATTTATGTGAGCTCTGCAAAATGATTTGAGATCTATGTGAACTCCACAAACAAATATGAGTTAACGTTTTACATTTGGTTGCCTATGAACTTCCAGTGTTAAATTATTAAGAATTGTGATTAAAGCAGAATGTAGTTGATTCTACATAGTTTAGAGTTGTTGTTTAGGTGATTGATTGATTGTTTCTGGAAAAGGTTTCGTTAAAGAGCTGATTGAATTGTTGATAAGGATATATTGTATTAGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGTTTCTGCAAAATGCTTTGAGGTCTATGGTGAGATTCACAAACAATAATGAACTGTAGAAGATTTGCTGTTGGTTGACCTTGAATCGCCAGAGTACAAGTATACAGAATTGCTATTAAAGTGAAATGCTGTTGATTCTAACTAGTCTGGAGTTGAGATTTAGGTGATTGATTGACTTGTTTCTGGAAAATTGGTTGGAATTAGAGCTGATTGAATTTATTGATTAAAATATATTGTTTTGATGATCTGGTTTGAATTTGCTTTCTCCAATTTAGATATAATCAACTATTTGTTTCTGCAAAATGATTTGAGTCTATGTGAGATTCACAAACAAATAATGAGTTATAGAAGGTTTGGCAGTTAGTTTGACCTTGAATCGCCAGTGTGAAAATATTCCGAATTGTGATTAAATCGGAATGTAGCTGACACTAACTAATAGAGTTGAGCTGTAGGTGATTGATAATTTCTGGTAAATATGCTTCAGTTTTAGAGCTGATTGATTTGTTGATAGTGATATCTTTGTGTTGATGGATCTATTATTTCTATAGAACAATTCTAGGAAGAGTAACTTGTGCAGTTTGACTTGGACCAAAAGTAGATGAAGGAGACCAAAGAAGAAAGGAAGGAAACAAAAGTAGAAGAATTTCCTCACTTTTAACTAGAGAAATTGTTGATTGAGTAAAAGATTTTGTATTTTGGGAGGAGAATTGTTTGAGCATAGGCTGTTTGATCCAGTCTTTCCTGATTAAATACCACTCTCCTGTTTGATGATTGAATTTATTGCAACCTCTTTCATCCTGATGTTTAACTTAAATTTCCATGTAGTTAAAAGTTGAAGGAATAGCTTGCTTATTTACCATTGAGCCAAGAATCTTTTTTTCTCCATCAGCTCAAAGCTATAGTGAGGCATCCATTACCTCAACAATCTACCAACTTCAGACCTCATAAGTATTTGACTGGGATATTTTTTCATCCTAGGCCAGGCTATCGCAATAGATTGGGATCTATAGTTAATAAATTATAGGATACCTGAAATTGCAATGACCACCAAAGCTATTACAAGGATATCCTGGCATTTTGCTGCCATAGAATTAGTATCAAAATGTGGTAACATGTGAAGTACATGTGTTCTCGCTGTCCCACTTGCAATCCATCTCCGTTTAGCCTAAAATGTTGGGTACTTCGAAGTTCGGCCTATAAATTTACAACCTGGACTACACGTGAAAAAGATCTTAGTTCAAATCTGATCCTTATATTGAACCATGTTGTAAATGAACTGTTTTTTCTTTTGACATAATACTTATTTTGGTCTTTCCAAAGGCGATAAGTTTTGCATAAAAGCCGTCATGGCTGTTCTTTTTAGCATAGTTTCACAGCATGCTCACATTCTACTGAATAATTTTTTGTTCTGCTTCTCAAATATTATCAATTTCTTTAAGATACATATTTTCTTCTTTGTTGTAGTTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTGGTAATTTATTTCCCTTTTTATGCCTTCAGTTTTCTGATCTTTGAATTGAATTTCTATTAGTTTCACTAATGCAATGATCAGGAAACTCCGGCAACATACATGTACTTATTTCAAGTCATGGGTCCATAGCTAGAATTTTCTCCTTCCACGTAATAACTTTTATTTCCATTGCAGTTCAACTTTTTCCTTCCTGTGTTAGTGTGCATGGTAGATTCCTGTAAGATCACATTTTGGTTAGTATCACTTGACATACACAAATTGCAATTCTAATGTGGGCACTGAGAGTTTGTTTTCAGTCTTAACCAGCTCAGTTCCAATATAAGGGGAAGACTAGATGATTCTCATCTCTAATATGCACTGAATAAGTAAAATGTAATCTGGATGGTTCTCTAGTTCCTACCAATTCACCACTGTGCCTTACTGTTTTACGTAATCTTCCCTTTCTCAACACCGTACTTGTTATTTTGAGCCAACTGCAAGTCTGCAACATAACCAATCAATATGCATTTTGGATGTCACACGCAAAGAGTAATAACTACTGCAGCCAAAAGCTCATTACTTTGTACCTGTTCTTCCCCATGTCTTAACTAATAATATGAGCTGTGTGGCTATTGTATTTCACGGCACCGGCGTTGATATTGATCAGTTCTATAAGCAAGTTCTGAATCCTGACTTGGTTTCAAGTGCAGCAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAGGTAAATAAGAAACAAATAGTTTTTGGGGAAGAAACCAATTTTTCATGCGTCTCTAATTTGAGATTGCATAAAAAAGGGAAATCAATTGAACCCGTATTGTATAATACGTAATGTATAACTAATGAATATATGTACTAGTTATAACTGTGGTGTCTGGACCAGCACAGCTCAACTAATCCATAACAACAGCAACTGCTCTTCAAACCCAAGCTATTTGAGATTGGCTATTTCTTCATGAAATTGACTAGTTTTACAGTTGTTGTCAAACCTACCACAACCCTCCTCTTTATCTTGGCTTGGGACTGCAGACTGCCAGTGTGAGAAAGCTTACACAGGCTGAGTTGCATTCATTTATATGAACTCAAATAACAACATACCCAGTATGGTCCCACAAGTGGGGTATTGGGAGGCTGGGGTAGACGTAGAGCTTACCAGTATGTTTGTGGGGAGTTATATGAACTCGATTATTTTTATTTGAAAAATGAACATTTAAGACCAAAACTAGTGGCTGCATTCTTGATCAGAATTTTTGGTCTGTCTAATAAAGCTCTTATGAATGCACCATAAAGGATGTTGACTAAAAGTATAATCGTCATCTATTTCTTATATCTACTTCCTTTGTTCGTGTGTGTGTGGGGGGGGGGGGGGGGGTTGTTAGGGAAGTAATCGGTTATTCAATTTACTTTACCCTTGATTAAGTATGCTCGTTAATATTAATATTGTCTACAGACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTTTGGATATAACTTACC</genome_strand>
        <mrna_strand>TTTCCATACACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGGTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAA-AAATCATATACTGATGTTCTATGAAGACAAATTTTGGATATAACTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322951" ref_strand="+" ref_description="SGN-E322951 [cTOB-30-M22]">
      <seq>tttccatacacagaaaaaagctttcaaagtttagctgcaccgatttcgattctcagtttctacagttttataagtgtatcagacgagtatggaatccaacaggggcaaccaaaatggaattcaacaacttttaggtgcagagcaagaagctcaacacattgtcaatgctgccaggagtgcaaaacaggctagattgaaacaggcaaaggatgaagctgagaaggagatagctgaatttcgtgcattcatggaggccgagttccagagaaagcttgaacagactagcggtgattcgggtgctaatgtcaaacgtcttgatcaagaaacgtttgcaaagatccaacacttgaaagcagaatctgaaagcatctccaacgatgttgtccagatgcttctgaggcaggtaaccacagtaaagaactaagattcatctctgaatgattaccaggatcaagtttatggtcattttctgctgattcttggttctccataattctgggtttcttgctacaccagtttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="29404" stop="34428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29704" g_stop="29768" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29769" i_stop="32255" i_length="2487">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32256" g_stop="32369" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="179" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32370" i_stop="33058" i_length="689">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33059" g_stop="33159" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="280" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33160" i_stop="33888" i_length="729">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33889" g_stop="34129" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="521" r_length="241" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E322951" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29704" e_stop="29768"/>
          <exon e_start="32256" e_stop="32369"/>
          <exon e_start="33059" e_stop="33159"/>
          <exon e_start="33889" e_stop="34129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCATACACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAGGTATTATTGAGGTTTTTTCCGATCATAATATGCTGATTTCAGCTTGAATTGATTAGATCTGGATCAGATGATTGTTTTGACTAATTTTGATATGGGATTCTTCTGAATTTGAAGTACATTTTTGTTTCTGTTGAATAATTTGAGGTTTATGTGAGATTCACAAGCAAATAATGAGTTATAGAAGGTTTTGGAGTTGGTTTGACTTGTGTCGTCAATGTGAAAGTATTCGGAGTTGTGATTAAAGCGGAATGTAGTTGATTCTAACTAGTTTGGAGTTGATGTTTATCTGTTTAGGTGATTGATTGACTTGCTTCTGGAAAAATTGCTTCAGTTTTAGAGCTGAGTGAATTGTTGATAAGGATTATATTGTTTTGATGGATCTGGTTTGAATTTGTTTACTCCGCTGTAGATATAATCAACTATTTGGTTTCTGCAAAATGATGAGGTCTATGTGAGCTTCACAAACAATGATGAGTTATAGATGCAGTTGGTTTGACCTTCAATCACTAGTGTATAAGTATTTCAAGTTAAGATTAAAGTAAAACGTAGTTGATTCTAACTAGTTTGGAGTTGAGGTTTAGGTGATTGATTGACTTGTTTATGGGAAATTGGTTTGGATTTAAAGATGATTGAATATTTGATAAGGATATATTGTTTTGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGGTTTCTACAAAATGGTTTGAGATTTATGTGAGCTCTGCAAAATGATTTGAGATCTATGTGAACTCCACAAACAAATATGAGTTAACGTTTTACATTTGGTTGCCTATGAACTTCCAGTGTTAAATTATTAAGAATTGTGATTAAAGCAGAATGTAGTTGATTCTACATAGTTTAGAGTTGTTGTTTAGGTGATTGATTGATTGTTTCTGGAAAAGGTTTCGTTAAAGAGCTGATTGAATTGTTGATAAGGATATATTGTATTAGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGTTTCTGCAAAATGCTTTGAGGTCTATGGTGAGATTCACAAACAATAATGAACTGTAGAAGATTTGCTGTTGGTTGACCTTGAATCGCCAGAGTACAAGTATACAGAATTGCTATTAAAGTGAAATGCTGTTGATTCTAACTAGTCTGGAGTTGAGATTTAGGTGATTGATTGACTTGTTTCTGGAAAATTGGTTGGAATTAGAGCTGATTGAATTTATTGATTAAAATATATTGTTTTGATGATCTGGTTTGAATTTGCTTTCTCCAATTTAGATATAATCAACTATTTGTTTCTGCAAAATGATTTGAGTCTATGTGAGATTCACAAACAAATAATGAGTTATAGAAGGTTTGGCAGTTAGTTTGACCTTGAATCGCCAGTGTGAAAATATTCCGAATTGTGATTAAATCGGAATGTAGCTGACACTAACTAATAGAGTTGAGCTGTAGGTGATTGATAATTTCTGGTAAATATGCTTCAGTTTTAGAGCTGATTGATTTGTTGATAGTGATATCTTTGTGTTGATGGATCTATTATTTCTATAGAACAATTCTAGGAAGAGTAACTTGTGCAGTTTGACTTGGACCAAAAGTAGATGAAGGAGACCAAAGAAGAAAGGAAGGAAACAAAAGTAGAAGAATTTCCTCACTTTTAACTAGAGAAATTGTTGATTGAGTAAAAGATTTTGTATTTTGGGAGGAGAATTGTTTGAGCATAGGCTGTTTGATCCAGTCTTTCCTGATTAAATACCACTCTCCTGTTTGATGATTGAATTTATTGCAACCTCTTTCATCCTGATGTTTAACTTAAATTTCCATGTAGTTAAAAGTTGAAGGAATAGCTTGCTTATTTACCATTGAGCCAAGAATCTTTTTTTCTCCATCAGCTCAAAGCTATAGTGAGGCATCCATTACCTCAACAATCTACCAACTTCAGACCTCATAAGTATTTGACTGGGATATTTTTTCATCCTAGGCCAGGCTATCGCAATAGATTGGGATCTATAGTTAATAAATTATAGGATACCTGAAATTGCAATGACCACCAAAGCTATTACAAGGATATCCTGGCATTTTGCTGCCATAGAATTAGTATCAAAATGTGGTAACATGTGAAGTACATGTGTTCTCGCTGTCCCACTTGCAATCCATCTCCGTTTAGCCTAAAATGTTGGGTACTTCGAAGTTCGGCCTATAAATTTACAACCTGGACTACACGTGAAAAAGATCTTAGTTCAAATCTGATCCTTATATTGAACCATGTTGTAAATGAACTGTTTTTTCTTTTGACATAATACTTATTTTGGTCTTTCCAAAGGCGATAAGTTTTGCATAAAAGCCGTCATGGCTGTTCTTTTTAGCATAGTTTCACAGCATGCTCACATTCTACTGAATAATTTTTTGTTCTGCTTCTCAAATATTATCAATTTCTTTAAGATACATATTTTCTTCTTTGTTGTAGTTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTGGTAATTTATTTCCCTTTTTATGCCTTCAGTTTTCTGATCTTTGAATTGAATTTCTATTAGTTTCACTAATGCAATGATCAGGAAACTCCGGCAACATACATGTACTTATTTCAAGTCATGGGTCCATAGCTAGAATTTTCTCCTTCCACGTAATAACTTTTATTTCCATTGCAGTTCAACTTTTTCCTTCCTGTGTTAGTGTGCATGGTAGATTCCTGTAAGATCACATTTTGGTTAGTATCACTTGACATACACAAATTGCAATTCTAATGTGGGCACTGAGAGTTTGTTTTCAGTCTTAACCAGCTCAGTTCCAATATAAGGGGAAGACTAGATGATTCTCATCTCTAATATGCACTGAATAAGTAAAATGTAATCTGGATGGTTCTCTAGTTCCTACCAATTCACCACTGTGCCTTACTGTTTTACGTAATCTTCCCTTTCTCAACACCGTACTTGTTATTTTGAGCCAACTGCAAGTCTGCAACATAACCAATCAATATGCATTTTGGATGTCACACGCAAAGAGTAATAACTACTGCAGCCAAAAGCTCATTACTTTGTACCTGTTCTTCCCCATGTCTTAACTAATAATATGAGCTGTGTGGCTATTGTATTTCACGGCACCGGCGTTGATATTGATCAGTTCTATAAGCAAGTTCTGAATCCTGACTTGGTTTCAAGTGCAGCAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAGGTAAATAAGAAACAAATAGTTTTTGGGGAAGAAACCAATTTTTCATGCGTCTCTAATTTGAGATTGCATAAAAAAGGGAAATCAATTGAACCCGTATTGTATAATACGTAATGTATAACTAATGAATATATGTACTAGTTATAACTGTGGTGTCTGGACCAGCACAGCTCAACTAATCCATAACAACAGCAACTGCTCTTCAAACCCAAGCTATTTGAGATTGGCTATTTCTTCATGAAATTGACTAGTTTTACAGTTGTTGTCAAACCTACCACAACCCTCCTCTTTATCTTGGCTTGGGACTGCAGACTGCCAGTGTGAGAAAGCTTACACAGGCTGAGTTGCATTCATTTATATGAACTCAAATAACAACATACCCAGTATGGTCCCACAAGTGGGGTATTGGGAGGCTGGGGTAGACGTAGAGCTTACCAGTATGTTTGTGGGGAGTTATATGAACTCGATTATTTTTATTTGAAAAATGAACATTTAAGACCAAAACTAGTGGCTGCATTCTTGATCAGAATTTTTGGTCTGTCTAATAAAGCTCTTATGAATGCACCATAAAGGATGTTGACTAAAAGTATAATCGTCATCTATTTCTTATATCTACTTCCTTTGTTCGTGTGTGTGTGGGGGGGGGGGGGGGGGTTGTTAGGGAAGTAATCGGTTATTCAATTTACTTTACCCTTGATTAAGTATGCTCGTTAATATTAATATTGTCTACAGACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAA</genome_strand>
        <mrna_strand>TTTCCATACACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGGTTTCTTGCTACACCAGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357394" ref_strand="+" ref_description="SGN-E357394 [cTOS-23-P5]">
      <seq>tacacagaaaaaagctttcaaagtttagctgcaccgatttcgattctcagtttctacagttttataagtgtatcagacgagtatggaatccaacaggggcaaccaaaatggaattcaacaacttttaggtgcagagcaagaagctcaacacattgtcaatgctgccaggagtgcaaaacaggctagattgaaacaggcaaaggatgaagctgagaaggagatagctgaatttcgtgcattcatggaggccgagttccagagaaagcttgaacagactagcggtgattcgggtgctaatgtcaaacgtcttgatcaagaaacgtttgcaaagatccaacacttgaaagcagaatctgaaagcatctccaacgatgttgtccagatgcttctgaggcaggtaaccacagtaaagaactaagattcatctctgaatgattaccaggatcaagtttatggtcattttctgctgattcttggttctccataattctggttttcttgctacaccagtttaatggttgttctccattttgtgttgtatatttatttatcactattggtcatcttggccctagttgaataaaataaatcatatactgatgttctatgaagacaaattttggatataacttacccacacaatgtgattatttcccgaatgaatgaaatacgtgttatgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="29410" stop="34599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29710" g_stop="29768" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29769" i_stop="32255" i_length="2487">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32256" g_stop="32369" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="173" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32370" i_stop="33058" i_length="689">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33059" g_stop="33159" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="274" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33160" i_stop="33888" i_length="729">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33889" g_stop="34303" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="689" r_length="415" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E357394" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29710" e_stop="29768"/>
          <exon e_start="32256" e_stop="32369"/>
          <exon e_start="33059" e_stop="33159"/>
          <exon e_start="33889" e_stop="34303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAGGTATTATTGAGGTTTTTTCCGATCATAATATGCTGATTTCAGCTTGAATTGATTAGATCTGGATCAGATGATTGTTTTGACTAATTTTGATATGGGATTCTTCTGAATTTGAAGTACATTTTTGTTTCTGTTGAATAATTTGAGGTTTATGTGAGATTCACAAGCAAATAATGAGTTATAGAAGGTTTTGGAGTTGGTTTGACTTGTGTCGTCAATGTGAAAGTATTCGGAGTTGTGATTAAAGCGGAATGTAGTTGATTCTAACTAGTTTGGAGTTGATGTTTATCTGTTTAGGTGATTGATTGACTTGCTTCTGGAAAAATTGCTTCAGTTTTAGAGCTGAGTGAATTGTTGATAAGGATTATATTGTTTTGATGGATCTGGTTTGAATTTGTTTACTCCGCTGTAGATATAATCAACTATTTGGTTTCTGCAAAATGATGAGGTCTATGTGAGCTTCACAAACAATGATGAGTTATAGATGCAGTTGGTTTGACCTTCAATCACTAGTGTATAAGTATTTCAAGTTAAGATTAAAGTAAAACGTAGTTGATTCTAACTAGTTTGGAGTTGAGGTTTAGGTGATTGATTGACTTGTTTATGGGAAATTGGTTTGGATTTAAAGATGATTGAATATTTGATAAGGATATATTGTTTTGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGGTTTCTACAAAATGGTTTGAGATTTATGTGAGCTCTGCAAAATGATTTGAGATCTATGTGAACTCCACAAACAAATATGAGTTAACGTTTTACATTTGGTTGCCTATGAACTTCCAGTGTTAAATTATTAAGAATTGTGATTAAAGCAGAATGTAGTTGATTCTACATAGTTTAGAGTTGTTGTTTAGGTGATTGATTGATTGTTTCTGGAAAAGGTTTCGTTAAAGAGCTGATTGAATTGTTGATAAGGATATATTGTATTAGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGTTTCTGCAAAATGCTTTGAGGTCTATGGTGAGATTCACAAACAATAATGAACTGTAGAAGATTTGCTGTTGGTTGACCTTGAATCGCCAGAGTACAAGTATACAGAATTGCTATTAAAGTGAAATGCTGTTGATTCTAACTAGTCTGGAGTTGAGATTTAGGTGATTGATTGACTTGTTTCTGGAAAATTGGTTGGAATTAGAGCTGATTGAATTTATTGATTAAAATATATTGTTTTGATGATCTGGTTTGAATTTGCTTTCTCCAATTTAGATATAATCAACTATTTGTTTCTGCAAAATGATTTGAGTCTATGTGAGATTCACAAACAAATAATGAGTTATAGAAGGTTTGGCAGTTAGTTTGACCTTGAATCGCCAGTGTGAAAATATTCCGAATTGTGATTAAATCGGAATGTAGCTGACACTAACTAATAGAGTTGAGCTGTAGGTGATTGATAATTTCTGGTAAATATGCTTCAGTTTTAGAGCTGATTGATTTGTTGATAGTGATATCTTTGTGTTGATGGATCTATTATTTCTATAGAACAATTCTAGGAAGAGTAACTTGTGCAGTTTGACTTGGACCAAAAGTAGATGAAGGAGACCAAAGAAGAAAGGAAGGAAACAAAAGTAGAAGAATTTCCTCACTTTTAACTAGAGAAATTGTTGATTGAGTAAAAGATTTTGTATTTTGGGAGGAGAATTGTTTGAGCATAGGCTGTTTGATCCAGTCTTTCCTGATTAAATACCACTCTCCTGTTTGATGATTGAATTTATTGCAACCTCTTTCATCCTGATGTTTAACTTAAATTTCCATGTAGTTAAAAGTTGAAGGAATAGCTTGCTTATTTACCATTGAGCCAAGAATCTTTTTTTCTCCATCAGCTCAAAGCTATAGTGAGGCATCCATTACCTCAACAATCTACCAACTTCAGACCTCATAAGTATTTGACTGGGATATTTTTTCATCCTAGGCCAGGCTATCGCAATAGATTGGGATCTATAGTTAATAAATTATAGGATACCTGAAATTGCAATGACCACCAAAGCTATTACAAGGATATCCTGGCATTTTGCTGCCATAGAATTAGTATCAAAATGTGGTAACATGTGAAGTACATGTGTTCTCGCTGTCCCACTTGCAATCCATCTCCGTTTAGCCTAAAATGTTGGGTACTTCGAAGTTCGGCCTATAAATTTACAACCTGGACTACACGTGAAAAAGATCTTAGTTCAAATCTGATCCTTATATTGAACCATGTTGTAAATGAACTGTTTTTTCTTTTGACATAATACTTATTTTGGTCTTTCCAAAGGCGATAAGTTTTGCATAAAAGCCGTCATGGCTGTTCTTTTTAGCATAGTTTCACAGCATGCTCACATTCTACTGAATAATTTTTTGTTCTGCTTCTCAAATATTATCAATTTCTTTAAGATACATATTTTCTTCTTTGTTGTAGTTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTGGTAATTTATTTCCCTTTTTATGCCTTCAGTTTTCTGATCTTTGAATTGAATTTCTATTAGTTTCACTAATGCAATGATCAGGAAACTCCGGCAACATACATGTACTTATTTCAAGTCATGGGTCCATAGCTAGAATTTTCTCCTTCCACGTAATAACTTTTATTTCCATTGCAGTTCAACTTTTTCCTTCCTGTGTTAGTGTGCATGGTAGATTCCTGTAAGATCACATTTTGGTTAGTATCACTTGACATACACAAATTGCAATTCTAATGTGGGCACTGAGAGTTTGTTTTCAGTCTTAACCAGCTCAGTTCCAATATAAGGGGAAGACTAGATGATTCTCATCTCTAATATGCACTGAATAAGTAAAATGTAATCTGGATGGTTCTCTAGTTCCTACCAATTCACCACTGTGCCTTACTGTTTTACGTAATCTTCCCTTTCTCAACACCGTACTTGTTATTTTGAGCCAACTGCAAGTCTGCAACATAACCAATCAATATGCATTTTGGATGTCACACGCAAAGAGTAATAACTACTGCAGCCAAAAGCTCATTACTTTGTACCTGTTCTTCCCCATGTCTTAACTAATAATATGAGCTGTGTGGCTATTGTATTTCACGGCACCGGCGTTGATATTGATCAGTTCTATAAGCAAGTTCTGAATCCTGACTTGGTTTCAAGTGCAGCAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAGGTAAATAAGAAACAAATAGTTTTTGGGGAAGAAACCAATTTTTCATGCGTCTCTAATTTGAGATTGCATAAAAAAGGGAAATCAATTGAACCCGTATTGTATAATACGTAATGTATAACTAATGAATATATGTACTAGTTATAACTGTGGTGTCTGGACCAGCACAGCTCAACTAATCCATAACAACAGCAACTGCTCTTCAAACCCAAGCTATTTGAGATTGGCTATTTCTTCATGAAATTGACTAGTTTTACAGTTGTTGTCAAACCTACCACAACCCTCCTCTTTATCTTGGCTTGGGACTGCAGACTGCCAGTGTGAGAAAGCTTACACAGGCTGAGTTGCATTCATTTATATGAACTCAAATAACAACATACCCAGTATGGTCCCACAAGTGGGGTATTGGGAGGCTGGGGTAGACGTAGAGCTTACCAGTATGTTTGTGGGGAGTTATATGAACTCGATTATTTTTATTTGAAAAATGAACATTTAAGACCAAAACTAGTGGCTGCATTCTTGATCAGAATTTTTGGTCTGTCTAATAAAGCTCTTATGAATGCACCATAAAGGATGTTGACTAAAAGTATAATCGTCATCTATTTCTTATATCTACTTCCTTTGTTCGTGTGTGTGTGGGGGGGGGGGGGGGGGTTGTTAGGGAAGTAATCGGTTATTCAATTTACTTTACCCTTGATTAAGTATGCTCGTTAATATTAATATTGTCTACAGACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTTTGGATATAACTTACCCACACAATGTGATTATTTCCCGAATGAATGAAATACGTGTTATGCATATAGTTT</genome_strand>
        <mrna_strand>TACACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTTTGGATATAACTTACCCACACAATGTGATTATTTCCCGAATGAATGAAATACGTGTTATGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393371" ref_strand="+" ref_description="SGN-E393371 [TUS-38-F13](-)">
      <seq>tacacagaaaaaagctttcaaagtttagctgcaccgatttcgattctcagtttctacagttttataagtgtatcagacgagtatggaatccaacaggggcaaccaaaatggaattcaacaacttttaggtgcagagcaagaagctcaacacattgtcaatgctgccaggagtgcaaaacaggctagattgaaacaggcaaaggatgaagctgagaaggagatagctgaatttcgtgcattcatggaggccgagttccagagaaagcttgaacagactagcggtgattcgggtgctaatgtcaaacgtcttgatcaagaaacgtttgcaaagatccaacacttgaaagcagaatctgaaagcatctccaacgatgttgtccagatgcttctgaggcaggtaaccacagtaaagaactaagattcatctctgaatgattaccaggatcaagtttatggtcattttctgctgattcttggttctccataattctggttttcttgctacaccagtttaatggttgttctccattttgtgttgtatatttatttatcactattggtcatcttggccctagttgaataaaataaatcatatactgatgttctatgaagacaaattttggatataacttacccacacaatgtgattatttcccgaatgaatgaaatacgtgttatgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="29410" stop="34599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29710" g_stop="29768" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29769" i_stop="32255" i_length="2487">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32256" g_stop="32369" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="173" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32370" i_stop="33058" i_length="689">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33059" g_stop="33159" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="274" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33160" i_stop="33888" i_length="729">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33889" g_stop="34303" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="689" r_length="415" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E393371" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29710" e_stop="29768"/>
          <exon e_start="32256" e_stop="32369"/>
          <exon e_start="33059" e_stop="33159"/>
          <exon e_start="33889" e_stop="34303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAGGTATTATTGAGGTTTTTTCCGATCATAATATGCTGATTTCAGCTTGAATTGATTAGATCTGGATCAGATGATTGTTTTGACTAATTTTGATATGGGATTCTTCTGAATTTGAAGTACATTTTTGTTTCTGTTGAATAATTTGAGGTTTATGTGAGATTCACAAGCAAATAATGAGTTATAGAAGGTTTTGGAGTTGGTTTGACTTGTGTCGTCAATGTGAAAGTATTCGGAGTTGTGATTAAAGCGGAATGTAGTTGATTCTAACTAGTTTGGAGTTGATGTTTATCTGTTTAGGTGATTGATTGACTTGCTTCTGGAAAAATTGCTTCAGTTTTAGAGCTGAGTGAATTGTTGATAAGGATTATATTGTTTTGATGGATCTGGTTTGAATTTGTTTACTCCGCTGTAGATATAATCAACTATTTGGTTTCTGCAAAATGATGAGGTCTATGTGAGCTTCACAAACAATGATGAGTTATAGATGCAGTTGGTTTGACCTTCAATCACTAGTGTATAAGTATTTCAAGTTAAGATTAAAGTAAAACGTAGTTGATTCTAACTAGTTTGGAGTTGAGGTTTAGGTGATTGATTGACTTGTTTATGGGAAATTGGTTTGGATTTAAAGATGATTGAATATTTGATAAGGATATATTGTTTTGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGGTTTCTACAAAATGGTTTGAGATTTATGTGAGCTCTGCAAAATGATTTGAGATCTATGTGAACTCCACAAACAAATATGAGTTAACGTTTTACATTTGGTTGCCTATGAACTTCCAGTGTTAAATTATTAAGAATTGTGATTAAAGCAGAATGTAGTTGATTCTACATAGTTTAGAGTTGTTGTTTAGGTGATTGATTGATTGTTTCTGGAAAAGGTTTCGTTAAAGAGCTGATTGAATTGTTGATAAGGATATATTGTATTAGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGTTTCTGCAAAATGCTTTGAGGTCTATGGTGAGATTCACAAACAATAATGAACTGTAGAAGATTTGCTGTTGGTTGACCTTGAATCGCCAGAGTACAAGTATACAGAATTGCTATTAAAGTGAAATGCTGTTGATTCTAACTAGTCTGGAGTTGAGATTTAGGTGATTGATTGACTTGTTTCTGGAAAATTGGTTGGAATTAGAGCTGATTGAATTTATTGATTAAAATATATTGTTTTGATGATCTGGTTTGAATTTGCTTTCTCCAATTTAGATATAATCAACTATTTGTTTCTGCAAAATGATTTGAGTCTATGTGAGATTCACAAACAAATAATGAGTTATAGAAGGTTTGGCAGTTAGTTTGACCTTGAATCGCCAGTGTGAAAATATTCCGAATTGTGATTAAATCGGAATGTAGCTGACACTAACTAATAGAGTTGAGCTGTAGGTGATTGATAATTTCTGGTAAATATGCTTCAGTTTTAGAGCTGATTGATTTGTTGATAGTGATATCTTTGTGTTGATGGATCTATTATTTCTATAGAACAATTCTAGGAAGAGTAACTTGTGCAGTTTGACTTGGACCAAAAGTAGATGAAGGAGACCAAAGAAGAAAGGAAGGAAACAAAAGTAGAAGAATTTCCTCACTTTTAACTAGAGAAATTGTTGATTGAGTAAAAGATTTTGTATTTTGGGAGGAGAATTGTTTGAGCATAGGCTGTTTGATCCAGTCTTTCCTGATTAAATACCACTCTCCTGTTTGATGATTGAATTTATTGCAACCTCTTTCATCCTGATGTTTAACTTAAATTTCCATGTAGTTAAAAGTTGAAGGAATAGCTTGCTTATTTACCATTGAGCCAAGAATCTTTTTTTCTCCATCAGCTCAAAGCTATAGTGAGGCATCCATTACCTCAACAATCTACCAACTTCAGACCTCATAAGTATTTGACTGGGATATTTTTTCATCCTAGGCCAGGCTATCGCAATAGATTGGGATCTATAGTTAATAAATTATAGGATACCTGAAATTGCAATGACCACCAAAGCTATTACAAGGATATCCTGGCATTTTGCTGCCATAGAATTAGTATCAAAATGTGGTAACATGTGAAGTACATGTGTTCTCGCTGTCCCACTTGCAATCCATCTCCGTTTAGCCTAAAATGTTGGGTACTTCGAAGTTCGGCCTATAAATTTACAACCTGGACTACACGTGAAAAAGATCTTAGTTCAAATCTGATCCTTATATTGAACCATGTTGTAAATGAACTGTTTTTTCTTTTGACATAATACTTATTTTGGTCTTTCCAAAGGCGATAAGTTTTGCATAAAAGCCGTCATGGCTGTTCTTTTTAGCATAGTTTCACAGCATGCTCACATTCTACTGAATAATTTTTTGTTCTGCTTCTCAAATATTATCAATTTCTTTAAGATACATATTTTCTTCTTTGTTGTAGTTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTGGTAATTTATTTCCCTTTTTATGCCTTCAGTTTTCTGATCTTTGAATTGAATTTCTATTAGTTTCACTAATGCAATGATCAGGAAACTCCGGCAACATACATGTACTTATTTCAAGTCATGGGTCCATAGCTAGAATTTTCTCCTTCCACGTAATAACTTTTATTTCCATTGCAGTTCAACTTTTTCCTTCCTGTGTTAGTGTGCATGGTAGATTCCTGTAAGATCACATTTTGGTTAGTATCACTTGACATACACAAATTGCAATTCTAATGTGGGCACTGAGAGTTTGTTTTCAGTCTTAACCAGCTCAGTTCCAATATAAGGGGAAGACTAGATGATTCTCATCTCTAATATGCACTGAATAAGTAAAATGTAATCTGGATGGTTCTCTAGTTCCTACCAATTCACCACTGTGCCTTACTGTTTTACGTAATCTTCCCTTTCTCAACACCGTACTTGTTATTTTGAGCCAACTGCAAGTCTGCAACATAACCAATCAATATGCATTTTGGATGTCACACGCAAAGAGTAATAACTACTGCAGCCAAAAGCTCATTACTTTGTACCTGTTCTTCCCCATGTCTTAACTAATAATATGAGCTGTGTGGCTATTGTATTTCACGGCACCGGCGTTGATATTGATCAGTTCTATAAGCAAGTTCTGAATCCTGACTTGGTTTCAAGTGCAGCAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAGGTAAATAAGAAACAAATAGTTTTTGGGGAAGAAACCAATTTTTCATGCGTCTCTAATTTGAGATTGCATAAAAAAGGGAAATCAATTGAACCCGTATTGTATAATACGTAATGTATAACTAATGAATATATGTACTAGTTATAACTGTGGTGTCTGGACCAGCACAGCTCAACTAATCCATAACAACAGCAACTGCTCTTCAAACCCAAGCTATTTGAGATTGGCTATTTCTTCATGAAATTGACTAGTTTTACAGTTGTTGTCAAACCTACCACAACCCTCCTCTTTATCTTGGCTTGGGACTGCAGACTGCCAGTGTGAGAAAGCTTACACAGGCTGAGTTGCATTCATTTATATGAACTCAAATAACAACATACCCAGTATGGTCCCACAAGTGGGGTATTGGGAGGCTGGGGTAGACGTAGAGCTTACCAGTATGTTTGTGGGGAGTTATATGAACTCGATTATTTTTATTTGAAAAATGAACATTTAAGACCAAAACTAGTGGCTGCATTCTTGATCAGAATTTTTGGTCTGTCTAATAAAGCTCTTATGAATGCACCATAAAGGATGTTGACTAAAAGTATAATCGTCATCTATTTCTTATATCTACTTCCTTTGTTCGTGTGTGTGTGGGGGGGGGGGGGGGGGTTGTTAGGGAAGTAATCGGTTATTCAATTTACTTTACCCTTGATTAAGTATGCTCGTTAATATTAATATTGTCTACAGACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTTTGGATATAACTTACCCACACAATGTGATTATTTCCCGAATGAATGAAATACGTGTTATGCATATAGTTT</genome_strand>
        <mrna_strand>TACACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTTTGGATATAACTTACCCACACAATGTGATTATTTCCCGAATGAATGAAATACGTGTTATGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398012" ref_strand="+" ref_description="SGN-E398012 [TUS-38-G11]">
      <seq>tacacagaaaaaagctttcaaagtttagctgcaccgatttcgattctcagtttctacagttttataagtgtatcagacgagtatggaatccaacaggggcaaccaaaatggaattcaacaacttttaggtgcagagcaagaagctcaacacattgtcaatgctgccaggagtgcaaaacaggctagattgaaacaggcaaaggatgaagctgagaaggagatagctgaatttcgtgcattcatggaggccgagttccagagaaagcttgaacagactagcggtgattcgggtgctaatgtcaaacgtcttgatcaagaaacgtttgcaaagatccaacacttgaaagcagaatctgaaagcatctccaacgatgttgtccagatgcttctgaggcaggtaaccacagtaaagaactaagattcatctctgaatgattaccaggatcaagtttatggtcattttctgctgattcttggttctccataattctggttttcttgctacaccagtttaatggttgttctccattttgtgttgtatatttatttatcactattggtcatcttggccctagttgaataaaataaatcatatactgatgttctatgaagacaaattttggatataactttaccccacaatgtgattatttccccaatgaatgaaatacctgttatgcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="29410" stop="34599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29710" g_stop="29768" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29769" i_stop="32255" i_length="2487">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32256" g_stop="32369" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="173" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32370" i_stop="33058" i_length="689">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33059" g_stop="33159" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="274" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33160" i_stop="33888" i_length="729">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33889" g_stop="34302" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="688" r_length="414" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E398012" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29710" e_stop="29768"/>
          <exon e_start="32256" e_stop="32369"/>
          <exon e_start="33059" e_stop="33159"/>
          <exon e_start="33889" e_stop="34302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAGGTATTATTGAGGTTTTTTCCGATCATAATATGCTGATTTCAGCTTGAATTGATTAGATCTGGATCAGATGATTGTTTTGACTAATTTTGATATGGGATTCTTCTGAATTTGAAGTACATTTTTGTTTCTGTTGAATAATTTGAGGTTTATGTGAGATTCACAAGCAAATAATGAGTTATAGAAGGTTTTGGAGTTGGTTTGACTTGTGTCGTCAATGTGAAAGTATTCGGAGTTGTGATTAAAGCGGAATGTAGTTGATTCTAACTAGTTTGGAGTTGATGTTTATCTGTTTAGGTGATTGATTGACTTGCTTCTGGAAAAATTGCTTCAGTTTTAGAGCTGAGTGAATTGTTGATAAGGATTATATTGTTTTGATGGATCTGGTTTGAATTTGTTTACTCCGCTGTAGATATAATCAACTATTTGGTTTCTGCAAAATGATGAGGTCTATGTGAGCTTCACAAACAATGATGAGTTATAGATGCAGTTGGTTTGACCTTCAATCACTAGTGTATAAGTATTTCAAGTTAAGATTAAAGTAAAACGTAGTTGATTCTAACTAGTTTGGAGTTGAGGTTTAGGTGATTGATTGACTTGTTTATGGGAAATTGGTTTGGATTTAAAGATGATTGAATATTTGATAAGGATATATTGTTTTGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGGTTTCTACAAAATGGTTTGAGATTTATGTGAGCTCTGCAAAATGATTTGAGATCTATGTGAACTCCACAAACAAATATGAGTTAACGTTTTACATTTGGTTGCCTATGAACTTCCAGTGTTAAATTATTAAGAATTGTGATTAAAGCAGAATGTAGTTGATTCTACATAGTTTAGAGTTGTTGTTTAGGTGATTGATTGATTGTTTCTGGAAAAGGTTTCGTTAAAGAGCTGATTGAATTGTTGATAAGGATATATTGTATTAGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGTTTCTGCAAAATGCTTTGAGGTCTATGGTGAGATTCACAAACAATAATGAACTGTAGAAGATTTGCTGTTGGTTGACCTTGAATCGCCAGAGTACAAGTATACAGAATTGCTATTAAAGTGAAATGCTGTTGATTCTAACTAGTCTGGAGTTGAGATTTAGGTGATTGATTGACTTGTTTCTGGAAAATTGGTTGGAATTAGAGCTGATTGAATTTATTGATTAAAATATATTGTTTTGATGATCTGGTTTGAATTTGCTTTCTCCAATTTAGATATAATCAACTATTTGTTTCTGCAAAATGATTTGAGTCTATGTGAGATTCACAAACAAATAATGAGTTATAGAAGGTTTGGCAGTTAGTTTGACCTTGAATCGCCAGTGTGAAAATATTCCGAATTGTGATTAAATCGGAATGTAGCTGACACTAACTAATAGAGTTGAGCTGTAGGTGATTGATAATTTCTGGTAAATATGCTTCAGTTTTAGAGCTGATTGATTTGTTGATAGTGATATCTTTGTGTTGATGGATCTATTATTTCTATAGAACAATTCTAGGAAGAGTAACTTGTGCAGTTTGACTTGGACCAAAAGTAGATGAAGGAGACCAAAGAAGAAAGGAAGGAAACAAAAGTAGAAGAATTTCCTCACTTTTAACTAGAGAAATTGTTGATTGAGTAAAAGATTTTGTATTTTGGGAGGAGAATTGTTTGAGCATAGGCTGTTTGATCCAGTCTTTCCTGATTAAATACCACTCTCCTGTTTGATGATTGAATTTATTGCAACCTCTTTCATCCTGATGTTTAACTTAAATTTCCATGTAGTTAAAAGTTGAAGGAATAGCTTGCTTATTTACCATTGAGCCAAGAATCTTTTTTTCTCCATCAGCTCAAAGCTATAGTGAGGCATCCATTACCTCAACAATCTACCAACTTCAGACCTCATAAGTATTTGACTGGGATATTTTTTCATCCTAGGCCAGGCTATCGCAATAGATTGGGATCTATAGTTAATAAATTATAGGATACCTGAAATTGCAATGACCACCAAAGCTATTACAAGGATATCCTGGCATTTTGCTGCCATAGAATTAGTATCAAAATGTGGTAACATGTGAAGTACATGTGTTCTCGCTGTCCCACTTGCAATCCATCTCCGTTTAGCCTAAAATGTTGGGTACTTCGAAGTTCGGCCTATAAATTTACAACCTGGACTACACGTGAAAAAGATCTTAGTTCAAATCTGATCCTTATATTGAACCATGTTGTAAATGAACTGTTTTTTCTTTTGACATAATACTTATTTTGGTCTTTCCAAAGGCGATAAGTTTTGCATAAAAGCCGTCATGGCTGTTCTTTTTAGCATAGTTTCACAGCATGCTCACATTCTACTGAATAATTTTTTGTTCTGCTTCTCAAATATTATCAATTTCTTTAAGATACATATTTTCTTCTTTGTTGTAGTTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTGGTAATTTATTTCCCTTTTTATGCCTTCAGTTTTCTGATCTTTGAATTGAATTTCTATTAGTTTCACTAATGCAATGATCAGGAAACTCCGGCAACATACATGTACTTATTTCAAGTCATGGGTCCATAGCTAGAATTTTCTCCTTCCACGTAATAACTTTTATTTCCATTGCAGTTCAACTTTTTCCTTCCTGTGTTAGTGTGCATGGTAGATTCCTGTAAGATCACATTTTGGTTAGTATCACTTGACATACACAAATTGCAATTCTAATGTGGGCACTGAGAGTTTGTTTTCAGTCTTAACCAGCTCAGTTCCAATATAAGGGGAAGACTAGATGATTCTCATCTCTAATATGCACTGAATAAGTAAAATGTAATCTGGATGGTTCTCTAGTTCCTACCAATTCACCACTGTGCCTTACTGTTTTACGTAATCTTCCCTTTCTCAACACCGTACTTGTTATTTTGAGCCAACTGCAAGTCTGCAACATAACCAATCAATATGCATTTTGGATGTCACACGCAAAGAGTAATAACTACTGCAGCCAAAAGCTCATTACTTTGTACCTGTTCTTCCCCATGTCTTAACTAATAATATGAGCTGTGTGGCTATTGTATTTCACGGCACCGGCGTTGATATTGATCAGTTCTATAAGCAAGTTCTGAATCCTGACTTGGTTTCAAGTGCAGCAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAGGTAAATAAGAAACAAATAGTTTTTGGGGAAGAAACCAATTTTTCATGCGTCTCTAATTTGAGATTGCATAAAAAAGGGAAATCAATTGAACCCGTATTGTATAATACGTAATGTATAACTAATGAATATATGTACTAGTTATAACTGTGGTGTCTGGACCAGCACAGCTCAACTAATCCATAACAACAGCAACTGCTCTTCAAACCCAAGCTATTTGAGATTGGCTATTTCTTCATGAAATTGACTAGTTTTACAGTTGTTGTCAAACCTACCACAACCCTCCTCTTTATCTTGGCTTGGGACTGCAGACTGCCAGTGTGAGAAAGCTTACACAGGCTGAGTTGCATTCATTTATATGAACTCAAATAACAACATACCCAGTATGGTCCCACAAGTGGGGTATTGGGAGGCTGGGGTAGACGTAGAGCTTACCAGTATGTTTGTGGGGAGTTATATGAACTCGATTATTTTTATTTGAAAAATGAACATTTAAGACCAAAACTAGTGGCTGCATTCTTGATCAGAATTTTTGGTCTGTCTAATAAAGCTCTTATGAATGCACCATAAAGGATGTTGACTAAAAGTATAATCGTCATCTATTTCTTATATCTACTTCCTTTGTTCGTGTGTGTGTGGGGGGGGGGGGGGGGGTTGTTAGGGAAGTAATCGGTTATTCAATTTACTTTACCCTTGATTAAGTATGCTCGTTAATATTAATATTGTCTACAGACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTTTGGATATAACTTACCCACACAATGTGATTATTTCCCGAATGAATGAAATACGTGTTATGCATATAGTT</genome_strand>
        <mrna_strand>TACACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTTTGGATATAACTTTACCCCACAATGTGATTATTTCCCCAATGAATGAAATACCTGTTATGCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393123" ref_strand="+" ref_description="SGN-E393123 [TUS-38-F13]">
      <seq>tacacagaaaaaagctttcaaagtttagctgcaccgatttcgattctcagtttctacagttttataagtgtatcagacgagtatggaatccaacaggggcaaccaaaatggaattcaacaacttttaggtgcagagcaagaagctcaacacattgtcaatgctgccaggagtgcaaaacaggctagattgaaacaggcaaaggatgaagctgagaaggagatagctgaatttcgtgcattcatggaggccgagttccagagaaagcttgaacagactagcggtgattcgggtgctaatgtcaaacgtcttgatcaagaaacgtttgcaaagatccaacacttgaaagcagaatctgaaagcatctccaacgatgttgtccagatgcttctgaggcaggtaaccacagtaaagaactaagattcatctctgaatgattaccaggatcaagtttatggtcattttctgctgattcttggttctccataattctggttttcttgctacaccagtttaatggttgttctccattttgtgttgtatatttatttatcactattggtcatcttggccctagttgaataaaataaatcatatactgatgttctatgaagacaaattttggatataacttacccacacaatgtgattatttcccgaatgaatgaaatacgttgttatgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="29410" stop="34599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29710" g_stop="29768" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29769" i_stop="32255" i_length="2487">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32256" g_stop="32369" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="173" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32370" i_stop="33058" i_length="689">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33059" g_stop="33159" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="274" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33160" i_stop="33888" i_length="729">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33889" g_stop="34287" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="673" r_length="399" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="682" polyA_stop="691"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E393123" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29710" e_stop="29768"/>
          <exon e_start="32256" e_stop="32369"/>
          <exon e_start="33059" e_stop="33159"/>
          <exon e_start="33889" e_stop="34287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAGGTATTATTGAGGTTTTTTCCGATCATAATATGCTGATTTCAGCTTGAATTGATTAGATCTGGATCAGATGATTGTTTTGACTAATTTTGATATGGGATTCTTCTGAATTTGAAGTACATTTTTGTTTCTGTTGAATAATTTGAGGTTTATGTGAGATTCACAAGCAAATAATGAGTTATAGAAGGTTTTGGAGTTGGTTTGACTTGTGTCGTCAATGTGAAAGTATTCGGAGTTGTGATTAAAGCGGAATGTAGTTGATTCTAACTAGTTTGGAGTTGATGTTTATCTGTTTAGGTGATTGATTGACTTGCTTCTGGAAAAATTGCTTCAGTTTTAGAGCTGAGTGAATTGTTGATAAGGATTATATTGTTTTGATGGATCTGGTTTGAATTTGTTTACTCCGCTGTAGATATAATCAACTATTTGGTTTCTGCAAAATGATGAGGTCTATGTGAGCTTCACAAACAATGATGAGTTATAGATGCAGTTGGTTTGACCTTCAATCACTAGTGTATAAGTATTTCAAGTTAAGATTAAAGTAAAACGTAGTTGATTCTAACTAGTTTGGAGTTGAGGTTTAGGTGATTGATTGACTTGTTTATGGGAAATTGGTTTGGATTTAAAGATGATTGAATATTTGATAAGGATATATTGTTTTGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGGTTTCTACAAAATGGTTTGAGATTTATGTGAGCTCTGCAAAATGATTTGAGATCTATGTGAACTCCACAAACAAATATGAGTTAACGTTTTACATTTGGTTGCCTATGAACTTCCAGTGTTAAATTATTAAGAATTGTGATTAAAGCAGAATGTAGTTGATTCTACATAGTTTAGAGTTGTTGTTTAGGTGATTGATTGATTGTTTCTGGAAAAGGTTTCGTTAAAGAGCTGATTGAATTGTTGATAAGGATATATTGTATTAGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGTTTCTGCAAAATGCTTTGAGGTCTATGGTGAGATTCACAAACAATAATGAACTGTAGAAGATTTGCTGTTGGTTGACCTTGAATCGCCAGAGTACAAGTATACAGAATTGCTATTAAAGTGAAATGCTGTTGATTCTAACTAGTCTGGAGTTGAGATTTAGGTGATTGATTGACTTGTTTCTGGAAAATTGGTTGGAATTAGAGCTGATTGAATTTATTGATTAAAATATATTGTTTTGATGATCTGGTTTGAATTTGCTTTCTCCAATTTAGATATAATCAACTATTTGTTTCTGCAAAATGATTTGAGTCTATGTGAGATTCACAAACAAATAATGAGTTATAGAAGGTTTGGCAGTTAGTTTGACCTTGAATCGCCAGTGTGAAAATATTCCGAATTGTGATTAAATCGGAATGTAGCTGACACTAACTAATAGAGTTGAGCTGTAGGTGATTGATAATTTCTGGTAAATATGCTTCAGTTTTAGAGCTGATTGATTTGTTGATAGTGATATCTTTGTGTTGATGGATCTATTATTTCTATAGAACAATTCTAGGAAGAGTAACTTGTGCAGTTTGACTTGGACCAAAAGTAGATGAAGGAGACCAAAGAAGAAAGGAAGGAAACAAAAGTAGAAGAATTTCCTCACTTTTAACTAGAGAAATTGTTGATTGAGTAAAAGATTTTGTATTTTGGGAGGAGAATTGTTTGAGCATAGGCTGTTTGATCCAGTCTTTCCTGATTAAATACCACTCTCCTGTTTGATGATTGAATTTATTGCAACCTCTTTCATCCTGATGTTTAACTTAAATTTCCATGTAGTTAAAAGTTGAAGGAATAGCTTGCTTATTTACCATTGAGCCAAGAATCTTTTTTTCTCCATCAGCTCAAAGCTATAGTGAGGCATCCATTACCTCAACAATCTACCAACTTCAGACCTCATAAGTATTTGACTGGGATATTTTTTCATCCTAGGCCAGGCTATCGCAATAGATTGGGATCTATAGTTAATAAATTATAGGATACCTGAAATTGCAATGACCACCAAAGCTATTACAAGGATATCCTGGCATTTTGCTGCCATAGAATTAGTATCAAAATGTGGTAACATGTGAAGTACATGTGTTCTCGCTGTCCCACTTGCAATCCATCTCCGTTTAGCCTAAAATGTTGGGTACTTCGAAGTTCGGCCTATAAATTTACAACCTGGACTACACGTGAAAAAGATCTTAGTTCAAATCTGATCCTTATATTGAACCATGTTGTAAATGAACTGTTTTTTCTTTTGACATAATACTTATTTTGGTCTTTCCAAAGGCGATAAGTTTTGCATAAAAGCCGTCATGGCTGTTCTTTTTAGCATAGTTTCACAGCATGCTCACATTCTACTGAATAATTTTTTGTTCTGCTTCTCAAATATTATCAATTTCTTTAAGATACATATTTTCTTCTTTGTTGTAGTTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTGGTAATTTATTTCCCTTTTTATGCCTTCAGTTTTCTGATCTTTGAATTGAATTTCTATTAGTTTCACTAATGCAATGATCAGGAAACTCCGGCAACATACATGTACTTATTTCAAGTCATGGGTCCATAGCTAGAATTTTCTCCTTCCACGTAATAACTTTTATTTCCATTGCAGTTCAACTTTTTCCTTCCTGTGTTAGTGTGCATGGTAGATTCCTGTAAGATCACATTTTGGTTAGTATCACTTGACATACACAAATTGCAATTCTAATGTGGGCACTGAGAGTTTGTTTTCAGTCTTAACCAGCTCAGTTCCAATATAAGGGGAAGACTAGATGATTCTCATCTCTAATATGCACTGAATAAGTAAAATGTAATCTGGATGGTTCTCTAGTTCCTACCAATTCACCACTGTGCCTTACTGTTTTACGTAATCTTCCCTTTCTCAACACCGTACTTGTTATTTTGAGCCAACTGCAAGTCTGCAACATAACCAATCAATATGCATTTTGGATGTCACACGCAAAGAGTAATAACTACTGCAGCCAAAAGCTCATTACTTTGTACCTGTTCTTCCCCATGTCTTAACTAATAATATGAGCTGTGTGGCTATTGTATTTCACGGCACCGGCGTTGATATTGATCAGTTCTATAAGCAAGTTCTGAATCCTGACTTGGTTTCAAGTGCAGCAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAGGTAAATAAGAAACAAATAGTTTTTGGGGAAGAAACCAATTTTTCATGCGTCTCTAATTTGAGATTGCATAAAAAAGGGAAATCAATTGAACCCGTATTGTATAATACGTAATGTATAACTAATGAATATATGTACTAGTTATAACTGTGGTGTCTGGACCAGCACAGCTCAACTAATCCATAACAACAGCAACTGCTCTTCAAACCCAAGCTATTTGAGATTGGCTATTTCTTCATGAAATTGACTAGTTTTACAGTTGTTGTCAAACCTACCACAACCCTCCTCTTTATCTTGGCTTGGGACTGCAGACTGCCAGTGTGAGAAAGCTTACACAGGCTGAGTTGCATTCATTTATATGAACTCAAATAACAACATACCCAGTATGGTCCCACAAGTGGGGTATTGGGAGGCTGGGGTAGACGTAGAGCTTACCAGTATGTTTGTGGGGAGTTATATGAACTCGATTATTTTTATTTGAAAAATGAACATTTAAGACCAAAACTAGTGGCTGCATTCTTGATCAGAATTTTTGGTCTGTCTAATAAAGCTCTTATGAATGCACCATAAAGGATGTTGACTAAAAGTATAATCGTCATCTATTTCTTATATCTACTTCCTTTGTTCGTGTGTGTGTGGGGGGGGGGGGGGGGGTTGTTAGGGAAGTAATCGGTTATTCAATTTACTTTACCCTTGATTAAGTATGCTCGTTAATATTAATATTGTCTACAGACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTTTGGATATAACTTACCCACACAATGTGATTATTTCCCGAATGAATGAAATACGT</genome_strand>
        <mrna_strand>TACACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTTTGGATATAACTTACCCACACAATGTGATTATTTCCCGAATGAATGAAATACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393122" ref_strand="+" ref_description="SGN-E393122 [TUS-38-F11]">
      <seq>tacacagaaaaaagctttcttagtttagctgcaccgatttcgattctcagtttctacagttttataagtgtatcagacgagtatggaatccaacaggggcaaccaaaatggaattcaacaacttttaggtgcagagcaagaagctcaacacattgtcaatgctgccaggagtgcaaaacaggctagattgaaacaggcaaaggatgaagctgagaaggagatagctgaatttcgtgcattcatggaggccgagttccacacaatgcttgaacagactattgttgattctggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="29410" stop="33459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29710" g_stop="29768" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29769" i_stop="32255" i_length="2487">
            <donor d_prob="0.877" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32256" g_stop="32369" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="173" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32370" i_stop="33058" i_length="689">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33059" g_stop="33159" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="274" r_length="101" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E393122" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29710" e_stop="29768"/>
          <exon e_start="32256" e_stop="32369"/>
          <exon e_start="33059" e_stop="33159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAGGTATTATTGAGGTTTTTTCCGATCATAATATGCTGATTTCAGCTTGAATTGATTAGATCTGGATCAGATGATTGTTTTGACTAATTTTGATATGGGATTCTTCTGAATTTGAAGTACATTTTTGTTTCTGTTGAATAATTTGAGGTTTATGTGAGATTCACAAGCAAATAATGAGTTATAGAAGGTTTTGGAGTTGGTTTGACTTGTGTCGTCAATGTGAAAGTATTCGGAGTTGTGATTAAAGCGGAATGTAGTTGATTCTAACTAGTTTGGAGTTGATGTTTATCTGTTTAGGTGATTGATTGACTTGCTTCTGGAAAAATTGCTTCAGTTTTAGAGCTGAGTGAATTGTTGATAAGGATTATATTGTTTTGATGGATCTGGTTTGAATTTGTTTACTCCGCTGTAGATATAATCAACTATTTGGTTTCTGCAAAATGATGAGGTCTATGTGAGCTTCACAAACAATGATGAGTTATAGATGCAGTTGGTTTGACCTTCAATCACTAGTGTATAAGTATTTCAAGTTAAGATTAAAGTAAAACGTAGTTGATTCTAACTAGTTTGGAGTTGAGGTTTAGGTGATTGATTGACTTGTTTATGGGAAATTGGTTTGGATTTAAAGATGATTGAATATTTGATAAGGATATATTGTTTTGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGGTTTCTACAAAATGGTTTGAGATTTATGTGAGCTCTGCAAAATGATTTGAGATCTATGTGAACTCCACAAACAAATATGAGTTAACGTTTTACATTTGGTTGCCTATGAACTTCCAGTGTTAAATTATTAAGAATTGTGATTAAAGCAGAATGTAGTTGATTCTACATAGTTTAGAGTTGTTGTTTAGGTGATTGATTGATTGTTTCTGGAAAAGGTTTCGTTAAAGAGCTGATTGAATTGTTGATAAGGATATATTGTATTAGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGTTTCTGCAAAATGCTTTGAGGTCTATGGTGAGATTCACAAACAATAATGAACTGTAGAAGATTTGCTGTTGGTTGACCTTGAATCGCCAGAGTACAAGTATACAGAATTGCTATTAAAGTGAAATGCTGTTGATTCTAACTAGTCTGGAGTTGAGATTTAGGTGATTGATTGACTTGTTTCTGGAAAATTGGTTGGAATTAGAGCTGATTGAATTTATTGATTAAAATATATTGTTTTGATGATCTGGTTTGAATTTGCTTTCTCCAATTTAGATATAATCAACTATTTGTTTCTGCAAAATGATTTGAGTCTATGTGAGATTCACAAACAAATAATGAGTTATAGAAGGTTTGGCAGTTAGTTTGACCTTGAATCGCCAGTGTGAAAATATTCCGAATTGTGATTAAATCGGAATGTAGCTGACACTAACTAATAGAGTTGAGCTGTAGGTGATTGATAATTTCTGGTAAATATGCTTCAGTTTTAGAGCTGATTGATTTGTTGATAGTGATATCTTTGTGTTGATGGATCTATTATTTCTATAGAACAATTCTAGGAAGAGTAACTTGTGCAGTTTGACTTGGACCAAAAGTAGATGAAGGAGACCAAAGAAGAAAGGAAGGAAACAAAAGTAGAAGAATTTCCTCACTTTTAACTAGAGAAATTGTTGATTGAGTAAAAGATTTTGTATTTTGGGAGGAGAATTGTTTGAGCATAGGCTGTTTGATCCAGTCTTTCCTGATTAAATACCACTCTCCTGTTTGATGATTGAATTTATTGCAACCTCTTTCATCCTGATGTTTAACTTAAATTTCCATGTAGTTAAAAGTTGAAGGAATAGCTTGCTTATTTACCATTGAGCCAAGAATCTTTTTTTCTCCATCAGCTCAAAGCTATAGTGAGGCATCCATTACCTCAACAATCTACCAACTTCAGACCTCATAAGTATTTGACTGGGATATTTTTTCATCCTAGGCCAGGCTATCGCAATAGATTGGGATCTATAGTTAATAAATTATAGGATACCTGAAATTGCAATGACCACCAAAGCTATTACAAGGATATCCTGGCATTTTGCTGCCATAGAATTAGTATCAAAATGTGGTAACATGTGAAGTACATGTGTTCTCGCTGTCCCACTTGCAATCCATCTCCGTTTAGCCTAAAATGTTGGGTACTTCGAAGTTCGGCCTATAAATTTACAACCTGGACTACACGTGAAAAAGATCTTAGTTCAAATCTGATCCTTATATTGAACCATGTTGTAAATGAACTGTTTTTTCTTTTGACATAATACTTATTTTGGTCTTTCCAAAGGCGATAAGTTTTGCATAAAAGCCGTCATGGCTGTTCTTTTTAGCATAGTTTCACAGCATGCTCACATTCTACTGAATAATTTTTTGTTCTGCTTCTCAAATATTATCAATTTCTTTAAGATACATATTTTCTTCTTTGTTGTAGTTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTGGTAATTTATTTCCCTTTTTATGCCTTCAGTTTTCTGATCTTTGAATTGAATTTCTATTAGTTTCACTAATGCAATGATCAGGAAACTCCGGCAACATACATGTACTTATTTCAAGTCATGGGTCCATAGCTAGAATTTTCTCCTTCCACGTAATAACTTTTATTTCCATTGCAGTTCAACTTTTTCCTTCCTGTGTTAGTGTGCATGGTAGATTCCTGTAAGATCACATTTTGGTTAGTATCACTTGACATACACAAATTGCAATTCTAATGTGGGCACTGAGAGTTTGTTTTCAGTCTTAACCAGCTCAGTTCCAATATAAGGGGAAGACTAGATGATTCTCATCTCTAATATGCACTGAATAAGTAAAATGTAATCTGGATGGTTCTCTAGTTCCTACCAATTCACCACTGTGCCTTACTGTTTTACGTAATCTTCCCTTTCTCAACACCGTACTTGTTATTTTGAGCCAACTGCAAGTCTGCAACATAACCAATCAATATGCATTTTGGATGTCACACGCAAAGAGTAATAACTACTGCAGCCAAAAGCTCATTACTTTGTACCTGTTCTTCCCCATGTCTTAACTAATAATATGAGCTGTGTGGCTATTGTATTTCACGGCACCGGCGTTGATATTGATCAGTTCTATAAGCAAGTTCTGAATCCTGACTTGGTTTCAAGTGCAGCAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAG</genome_strand>
        <mrna_strand>TACACAGAAAAAAGCTTTCTTAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCACACAATGCTTGAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541433" ref_strand="+" ref_description="SGN-E541433 [TUS-62-D15](-)">
      <seq>acacagaaaaaagctttcaaagtttagctgcaccgatttcgattctcagtttctacagttttataagtgtatcagacgagtatggaatccaacaggggcaaccaaaatggaattcaacaacttttaggtgcagagcaagaagctcaacacattgtcaatgctgccaggagtgcaaaacaggctagattgaaacaggcaaaggatgaagctgagaaggagatagctgaatttcgtgcattcatggaggccgagttccagagaaagcttgaacagactagcggtgattcgggtgctaatgtcaaacgtcttgatcaagaaacgtttgcaaagatccaacacttgaaagcagaatctgaaagcatctccaacgatgttgtccagatgcttctgaggcaggtaaccacagtaaagaactaagattcatctctgaatgattaccaggatcaagtttatggtcattttctgctgattcttggttctccataattctggttttcttgctacaccagtttaatggttgttctccattttgtgttgtatatttatttatcactattggtcatcttggccctagttgaataaaataaatcatatactgatgttctatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="29411" stop="34531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29711" g_stop="29768" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29769" i_stop="32255" i_length="2487">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32256" g_stop="32369" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="172" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32370" i_stop="33058" i_length="689">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33059" g_stop="33159" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="273" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33160" i_stop="33888" i_length="729">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33889" g_stop="34234" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="619" r_length="346" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E541433" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29711" e_stop="29768"/>
          <exon e_start="32256" e_stop="32369"/>
          <exon e_start="33059" e_stop="33159"/>
          <exon e_start="33889" e_stop="34234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAGGTATTATTGAGGTTTTTTCCGATCATAATATGCTGATTTCAGCTTGAATTGATTAGATCTGGATCAGATGATTGTTTTGACTAATTTTGATATGGGATTCTTCTGAATTTGAAGTACATTTTTGTTTCTGTTGAATAATTTGAGGTTTATGTGAGATTCACAAGCAAATAATGAGTTATAGAAGGTTTTGGAGTTGGTTTGACTTGTGTCGTCAATGTGAAAGTATTCGGAGTTGTGATTAAAGCGGAATGTAGTTGATTCTAACTAGTTTGGAGTTGATGTTTATCTGTTTAGGTGATTGATTGACTTGCTTCTGGAAAAATTGCTTCAGTTTTAGAGCTGAGTGAATTGTTGATAAGGATTATATTGTTTTGATGGATCTGGTTTGAATTTGTTTACTCCGCTGTAGATATAATCAACTATTTGGTTTCTGCAAAATGATGAGGTCTATGTGAGCTTCACAAACAATGATGAGTTATAGATGCAGTTGGTTTGACCTTCAATCACTAGTGTATAAGTATTTCAAGTTAAGATTAAAGTAAAACGTAGTTGATTCTAACTAGTTTGGAGTTGAGGTTTAGGTGATTGATTGACTTGTTTATGGGAAATTGGTTTGGATTTAAAGATGATTGAATATTTGATAAGGATATATTGTTTTGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGGTTTCTACAAAATGGTTTGAGATTTATGTGAGCTCTGCAAAATGATTTGAGATCTATGTGAACTCCACAAACAAATATGAGTTAACGTTTTACATTTGGTTGCCTATGAACTTCCAGTGTTAAATTATTAAGAATTGTGATTAAAGCAGAATGTAGTTGATTCTACATAGTTTAGAGTTGTTGTTTAGGTGATTGATTGATTGTTTCTGGAAAAGGTTTCGTTAAAGAGCTGATTGAATTGTTGATAAGGATATATTGTATTAGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGTTTCTGCAAAATGCTTTGAGGTCTATGGTGAGATTCACAAACAATAATGAACTGTAGAAGATTTGCTGTTGGTTGACCTTGAATCGCCAGAGTACAAGTATACAGAATTGCTATTAAAGTGAAATGCTGTTGATTCTAACTAGTCTGGAGTTGAGATTTAGGTGATTGATTGACTTGTTTCTGGAAAATTGGTTGGAATTAGAGCTGATTGAATTTATTGATTAAAATATATTGTTTTGATGATCTGGTTTGAATTTGCTTTCTCCAATTTAGATATAATCAACTATTTGTTTCTGCAAAATGATTTGAGTCTATGTGAGATTCACAAACAAATAATGAGTTATAGAAGGTTTGGCAGTTAGTTTGACCTTGAATCGCCAGTGTGAAAATATTCCGAATTGTGATTAAATCGGAATGTAGCTGACACTAACTAATAGAGTTGAGCTGTAGGTGATTGATAATTTCTGGTAAATATGCTTCAGTTTTAGAGCTGATTGATTTGTTGATAGTGATATCTTTGTGTTGATGGATCTATTATTTCTATAGAACAATTCTAGGAAGAGTAACTTGTGCAGTTTGACTTGGACCAAAAGTAGATGAAGGAGACCAAAGAAGAAAGGAAGGAAACAAAAGTAGAAGAATTTCCTCACTTTTAACTAGAGAAATTGTTGATTGAGTAAAAGATTTTGTATTTTGGGAGGAGAATTGTTTGAGCATAGGCTGTTTGATCCAGTCTTTCCTGATTAAATACCACTCTCCTGTTTGATGATTGAATTTATTGCAACCTCTTTCATCCTGATGTTTAACTTAAATTTCCATGTAGTTAAAAGTTGAAGGAATAGCTTGCTTATTTACCATTGAGCCAAGAATCTTTTTTTCTCCATCAGCTCAAAGCTATAGTGAGGCATCCATTACCTCAACAATCTACCAACTTCAGACCTCATAAGTATTTGACTGGGATATTTTTTCATCCTAGGCCAGGCTATCGCAATAGATTGGGATCTATAGTTAATAAATTATAGGATACCTGAAATTGCAATGACCACCAAAGCTATTACAAGGATATCCTGGCATTTTGCTGCCATAGAATTAGTATCAAAATGTGGTAACATGTGAAGTACATGTGTTCTCGCTGTCCCACTTGCAATCCATCTCCGTTTAGCCTAAAATGTTGGGTACTTCGAAGTTCGGCCTATAAATTTACAACCTGGACTACACGTGAAAAAGATCTTAGTTCAAATCTGATCCTTATATTGAACCATGTTGTAAATGAACTGTTTTTTCTTTTGACATAATACTTATTTTGGTCTTTCCAAAGGCGATAAGTTTTGCATAAAAGCCGTCATGGCTGTTCTTTTTAGCATAGTTTCACAGCATGCTCACATTCTACTGAATAATTTTTTGTTCTGCTTCTCAAATATTATCAATTTCTTTAAGATACATATTTTCTTCTTTGTTGTAGTTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTGGTAATTTATTTCCCTTTTTATGCCTTCAGTTTTCTGATCTTTGAATTGAATTTCTATTAGTTTCACTAATGCAATGATCAGGAAACTCCGGCAACATACATGTACTTATTTCAAGTCATGGGTCCATAGCTAGAATTTTCTCCTTCCACGTAATAACTTTTATTTCCATTGCAGTTCAACTTTTTCCTTCCTGTGTTAGTGTGCATGGTAGATTCCTGTAAGATCACATTTTGGTTAGTATCACTTGACATACACAAATTGCAATTCTAATGTGGGCACTGAGAGTTTGTTTTCAGTCTTAACCAGCTCAGTTCCAATATAAGGGGAAGACTAGATGATTCTCATCTCTAATATGCACTGAATAAGTAAAATGTAATCTGGATGGTTCTCTAGTTCCTACCAATTCACCACTGTGCCTTACTGTTTTACGTAATCTTCCCTTTCTCAACACCGTACTTGTTATTTTGAGCCAACTGCAAGTCTGCAACATAACCAATCAATATGCATTTTGGATGTCACACGCAAAGAGTAATAACTACTGCAGCCAAAAGCTCATTACTTTGTACCTGTTCTTCCCCATGTCTTAACTAATAATATGAGCTGTGTGGCTATTGTATTTCACGGCACCGGCGTTGATATTGATCAGTTCTATAAGCAAGTTCTGAATCCTGACTTGGTTTCAAGTGCAGCAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAGGTAAATAAGAAACAAATAGTTTTTGGGGAAGAAACCAATTTTTCATGCGTCTCTAATTTGAGATTGCATAAAAAAGGGAAATCAATTGAACCCGTATTGTATAATACGTAATGTATAACTAATGAATATATGTACTAGTTATAACTGTGGTGTCTGGACCAGCACAGCTCAACTAATCCATAACAACAGCAACTGCTCTTCAAACCCAAGCTATTTGAGATTGGCTATTTCTTCATGAAATTGACTAGTTTTACAGTTGTTGTCAAACCTACCACAACCCTCCTCTTTATCTTGGCTTGGGACTGCAGACTGCCAGTGTGAGAAAGCTTACACAGGCTGAGTTGCATTCATTTATATGAACTCAAATAACAACATACCCAGTATGGTCCCACAAGTGGGGTATTGGGAGGCTGGGGTAGACGTAGAGCTTACCAGTATGTTTGTGGGGAGTTATATGAACTCGATTATTTTTATTTGAAAAATGAACATTTAAGACCAAAACTAGTGGCTGCATTCTTGATCAGAATTTTTGGTCTGTCTAATAAAGCTCTTATGAATGCACCATAAAGGATGTTGACTAAAAGTATAATCGTCATCTATTTCTTATATCTACTTCCTTTGTTCGTGTGTGTGTGGGGGGGGGGGGGGGGGTTGTTAGGGAAGTAATCGGTTATTCAATTTACTTTACCCTTGATTAAGTATGCTCGTTAATATTAATATTGTCTACAGACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTT</genome_strand>
        <mrna_strand>ACACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541436" ref_strand="+" ref_description="SGN-E541436 [TUS-62-D15]">
      <seq>acacagaaaaaagctttcaaagtttagctgcaccgatttcgattctcagtttctacagttttataagtgtatcagacgagtatggaatccaacaggggcaaccaaaatggaattcaacaacttttaggtgcagagcaagaagctcaacacattgtcaatgctgccaggagtgcaaaacaggctagattgaaacaggcaaaggatgaagctgagaaggagatagctgaatttcgtgcattcatggaggccgagttccagagaaagcttgaacagactagcggtgattcgggtgctaatgtcaaacgtcttgatcaagaaacgtttgcaaagatccaacacttgaaagcagaatctgaaagcatctccaacgatgttgtccagatgcttctgaggcaggtaaccacagtaaagaactaagattcatctctgaatgattaccaggatcaagtttatggtcattttctgctgattcttggttctccataattctggttttcttgctacaccagtttaatggttgttctccattttgtgttgtatatttatttatcactattggtcatcttggccctagttgaataaaataaatcatatactgatgttctatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="29411" stop="34531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29711" g_stop="29768" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29769" i_stop="32255" i_length="2487">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32256" g_stop="32369" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="172" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32370" i_stop="33058" i_length="689">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33059" g_stop="33159" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="273" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33160" i_stop="33888" i_length="729">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33889" g_stop="34234" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="619" r_length="346" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E541436" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29711" e_stop="29768"/>
          <exon e_start="32256" e_stop="32369"/>
          <exon e_start="33059" e_stop="33159"/>
          <exon e_start="33889" e_stop="34234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAGGTATTATTGAGGTTTTTTCCGATCATAATATGCTGATTTCAGCTTGAATTGATTAGATCTGGATCAGATGATTGTTTTGACTAATTTTGATATGGGATTCTTCTGAATTTGAAGTACATTTTTGTTTCTGTTGAATAATTTGAGGTTTATGTGAGATTCACAAGCAAATAATGAGTTATAGAAGGTTTTGGAGTTGGTTTGACTTGTGTCGTCAATGTGAAAGTATTCGGAGTTGTGATTAAAGCGGAATGTAGTTGATTCTAACTAGTTTGGAGTTGATGTTTATCTGTTTAGGTGATTGATTGACTTGCTTCTGGAAAAATTGCTTCAGTTTTAGAGCTGAGTGAATTGTTGATAAGGATTATATTGTTTTGATGGATCTGGTTTGAATTTGTTTACTCCGCTGTAGATATAATCAACTATTTGGTTTCTGCAAAATGATGAGGTCTATGTGAGCTTCACAAACAATGATGAGTTATAGATGCAGTTGGTTTGACCTTCAATCACTAGTGTATAAGTATTTCAAGTTAAGATTAAAGTAAAACGTAGTTGATTCTAACTAGTTTGGAGTTGAGGTTTAGGTGATTGATTGACTTGTTTATGGGAAATTGGTTTGGATTTAAAGATGATTGAATATTTGATAAGGATATATTGTTTTGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGGTTTCTACAAAATGGTTTGAGATTTATGTGAGCTCTGCAAAATGATTTGAGATCTATGTGAACTCCACAAACAAATATGAGTTAACGTTTTACATTTGGTTGCCTATGAACTTCCAGTGTTAAATTATTAAGAATTGTGATTAAAGCAGAATGTAGTTGATTCTACATAGTTTAGAGTTGTTGTTTAGGTGATTGATTGATTGTTTCTGGAAAAGGTTTCGTTAAAGAGCTGATTGAATTGTTGATAAGGATATATTGTATTAGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGTTTCTGCAAAATGCTTTGAGGTCTATGGTGAGATTCACAAACAATAATGAACTGTAGAAGATTTGCTGTTGGTTGACCTTGAATCGCCAGAGTACAAGTATACAGAATTGCTATTAAAGTGAAATGCTGTTGATTCTAACTAGTCTGGAGTTGAGATTTAGGTGATTGATTGACTTGTTTCTGGAAAATTGGTTGGAATTAGAGCTGATTGAATTTATTGATTAAAATATATTGTTTTGATGATCTGGTTTGAATTTGCTTTCTCCAATTTAGATATAATCAACTATTTGTTTCTGCAAAATGATTTGAGTCTATGTGAGATTCACAAACAAATAATGAGTTATAGAAGGTTTGGCAGTTAGTTTGACCTTGAATCGCCAGTGTGAAAATATTCCGAATTGTGATTAAATCGGAATGTAGCTGACACTAACTAATAGAGTTGAGCTGTAGGTGATTGATAATTTCTGGTAAATATGCTTCAGTTTTAGAGCTGATTGATTTGTTGATAGTGATATCTTTGTGTTGATGGATCTATTATTTCTATAGAACAATTCTAGGAAGAGTAACTTGTGCAGTTTGACTTGGACCAAAAGTAGATGAAGGAGACCAAAGAAGAAAGGAAGGAAACAAAAGTAGAAGAATTTCCTCACTTTTAACTAGAGAAATTGTTGATTGAGTAAAAGATTTTGTATTTTGGGAGGAGAATTGTTTGAGCATAGGCTGTTTGATCCAGTCTTTCCTGATTAAATACCACTCTCCTGTTTGATGATTGAATTTATTGCAACCTCTTTCATCCTGATGTTTAACTTAAATTTCCATGTAGTTAAAAGTTGAAGGAATAGCTTGCTTATTTACCATTGAGCCAAGAATCTTTTTTTCTCCATCAGCTCAAAGCTATAGTGAGGCATCCATTACCTCAACAATCTACCAACTTCAGACCTCATAAGTATTTGACTGGGATATTTTTTCATCCTAGGCCAGGCTATCGCAATAGATTGGGATCTATAGTTAATAAATTATAGGATACCTGAAATTGCAATGACCACCAAAGCTATTACAAGGATATCCTGGCATTTTGCTGCCATAGAATTAGTATCAAAATGTGGTAACATGTGAAGTACATGTGTTCTCGCTGTCCCACTTGCAATCCATCTCCGTTTAGCCTAAAATGTTGGGTACTTCGAAGTTCGGCCTATAAATTTACAACCTGGACTACACGTGAAAAAGATCTTAGTTCAAATCTGATCCTTATATTGAACCATGTTGTAAATGAACTGTTTTTTCTTTTGACATAATACTTATTTTGGTCTTTCCAAAGGCGATAAGTTTTGCATAAAAGCCGTCATGGCTGTTCTTTTTAGCATAGTTTCACAGCATGCTCACATTCTACTGAATAATTTTTTGTTCTGCTTCTCAAATATTATCAATTTCTTTAAGATACATATTTTCTTCTTTGTTGTAGTTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTGGTAATTTATTTCCCTTTTTATGCCTTCAGTTTTCTGATCTTTGAATTGAATTTCTATTAGTTTCACTAATGCAATGATCAGGAAACTCCGGCAACATACATGTACTTATTTCAAGTCATGGGTCCATAGCTAGAATTTTCTCCTTCCACGTAATAACTTTTATTTCCATTGCAGTTCAACTTTTTCCTTCCTGTGTTAGTGTGCATGGTAGATTCCTGTAAGATCACATTTTGGTTAGTATCACTTGACATACACAAATTGCAATTCTAATGTGGGCACTGAGAGTTTGTTTTCAGTCTTAACCAGCTCAGTTCCAATATAAGGGGAAGACTAGATGATTCTCATCTCTAATATGCACTGAATAAGTAAAATGTAATCTGGATGGTTCTCTAGTTCCTACCAATTCACCACTGTGCCTTACTGTTTTACGTAATCTTCCCTTTCTCAACACCGTACTTGTTATTTTGAGCCAACTGCAAGTCTGCAACATAACCAATCAATATGCATTTTGGATGTCACACGCAAAGAGTAATAACTACTGCAGCCAAAAGCTCATTACTTTGTACCTGTTCTTCCCCATGTCTTAACTAATAATATGAGCTGTGTGGCTATTGTATTTCACGGCACCGGCGTTGATATTGATCAGTTCTATAAGCAAGTTCTGAATCCTGACTTGGTTTCAAGTGCAGCAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAGGTAAATAAGAAACAAATAGTTTTTGGGGAAGAAACCAATTTTTCATGCGTCTCTAATTTGAGATTGCATAAAAAAGGGAAATCAATTGAACCCGTATTGTATAATACGTAATGTATAACTAATGAATATATGTACTAGTTATAACTGTGGTGTCTGGACCAGCACAGCTCAACTAATCCATAACAACAGCAACTGCTCTTCAAACCCAAGCTATTTGAGATTGGCTATTTCTTCATGAAATTGACTAGTTTTACAGTTGTTGTCAAACCTACCACAACCCTCCTCTTTATCTTGGCTTGGGACTGCAGACTGCCAGTGTGAGAAAGCTTACACAGGCTGAGTTGCATTCATTTATATGAACTCAAATAACAACATACCCAGTATGGTCCCACAAGTGGGGTATTGGGAGGCTGGGGTAGACGTAGAGCTTACCAGTATGTTTGTGGGGAGTTATATGAACTCGATTATTTTTATTTGAAAAATGAACATTTAAGACCAAAACTAGTGGCTGCATTCTTGATCAGAATTTTTGGTCTGTCTAATAAAGCTCTTATGAATGCACCATAAAGGATGTTGACTAAAAGTATAATCGTCATCTATTTCTTATATCTACTTCCTTTGTTCGTGTGTGTGTGGGGGGGGGGGGGGGGGTTGTTAGGGAAGTAATCGGTTATTCAATTTACTTTACCCTTGATTAAGTATGCTCGTTAATATTAATATTGTCTACAGACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTT</genome_strand>
        <mrna_strand>ACACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290051" ref_strand="+" ref_description="SGN-E290051 [cLET-5-C12]">
      <seq>acacagaaaaaagctttcaaagtttagctgcaccgatttcgattctcagtttctacagttttataagtgtatcagacgagtatggaatccaacaggggcaaccaaaatggaattcaacaacttttaggtgcagagcaagaagctcaacacattgtcaatgctgccaggagtgcaaaacaggctagattgaaacaggcaaaggatgaagctgagaaggagatagctgaatttcgtgcattcatggaggccgagttccagagaaagcttgaacagactagcggtgattcgggtgctaatgtcaaacgtcttgatcaagaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="29411" stop="34238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29711" g_stop="29768" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29769" i_stop="32255" i_length="2487">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32256" g_stop="32369" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="172" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32370" i_stop="33058" i_length="689">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33059" g_stop="33159" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="273" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33160" i_stop="33888" i_length="729">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33889" g_stop="33938" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="323" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E290051" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29711" e_stop="29768"/>
          <exon e_start="32256" e_stop="32369"/>
          <exon e_start="33059" e_stop="33159"/>
          <exon e_start="33889" e_stop="33938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAGGTATTATTGAGGTTTTTTCCGATCATAATATGCTGATTTCAGCTTGAATTGATTAGATCTGGATCAGATGATTGTTTTGACTAATTTTGATATGGGATTCTTCTGAATTTGAAGTACATTTTTGTTTCTGTTGAATAATTTGAGGTTTATGTGAGATTCACAAGCAAATAATGAGTTATAGAAGGTTTTGGAGTTGGTTTGACTTGTGTCGTCAATGTGAAAGTATTCGGAGTTGTGATTAAAGCGGAATGTAGTTGATTCTAACTAGTTTGGAGTTGATGTTTATCTGTTTAGGTGATTGATTGACTTGCTTCTGGAAAAATTGCTTCAGTTTTAGAGCTGAGTGAATTGTTGATAAGGATTATATTGTTTTGATGGATCTGGTTTGAATTTGTTTACTCCGCTGTAGATATAATCAACTATTTGGTTTCTGCAAAATGATGAGGTCTATGTGAGCTTCACAAACAATGATGAGTTATAGATGCAGTTGGTTTGACCTTCAATCACTAGTGTATAAGTATTTCAAGTTAAGATTAAAGTAAAACGTAGTTGATTCTAACTAGTTTGGAGTTGAGGTTTAGGTGATTGATTGACTTGTTTATGGGAAATTGGTTTGGATTTAAAGATGATTGAATATTTGATAAGGATATATTGTTTTGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGGTTTCTACAAAATGGTTTGAGATTTATGTGAGCTCTGCAAAATGATTTGAGATCTATGTGAACTCCACAAACAAATATGAGTTAACGTTTTACATTTGGTTGCCTATGAACTTCCAGTGTTAAATTATTAAGAATTGTGATTAAAGCAGAATGTAGTTGATTCTACATAGTTTAGAGTTGTTGTTTAGGTGATTGATTGATTGTTTCTGGAAAAGGTTTCGTTAAAGAGCTGATTGAATTGTTGATAAGGATATATTGTATTAGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGTTTCTGCAAAATGCTTTGAGGTCTATGGTGAGATTCACAAACAATAATGAACTGTAGAAGATTTGCTGTTGGTTGACCTTGAATCGCCAGAGTACAAGTATACAGAATTGCTATTAAAGTGAAATGCTGTTGATTCTAACTAGTCTGGAGTTGAGATTTAGGTGATTGATTGACTTGTTTCTGGAAAATTGGTTGGAATTAGAGCTGATTGAATTTATTGATTAAAATATATTGTTTTGATGATCTGGTTTGAATTTGCTTTCTCCAATTTAGATATAATCAACTATTTGTTTCTGCAAAATGATTTGAGTCTATGTGAGATTCACAAACAAATAATGAGTTATAGAAGGTTTGGCAGTTAGTTTGACCTTGAATCGCCAGTGTGAAAATATTCCGAATTGTGATTAAATCGGAATGTAGCTGACACTAACTAATAGAGTTGAGCTGTAGGTGATTGATAATTTCTGGTAAATATGCTTCAGTTTTAGAGCTGATTGATTTGTTGATAGTGATATCTTTGTGTTGATGGATCTATTATTTCTATAGAACAATTCTAGGAAGAGTAACTTGTGCAGTTTGACTTGGACCAAAAGTAGATGAAGGAGACCAAAGAAGAAAGGAAGGAAACAAAAGTAGAAGAATTTCCTCACTTTTAACTAGAGAAATTGTTGATTGAGTAAAAGATTTTGTATTTTGGGAGGAGAATTGTTTGAGCATAGGCTGTTTGATCCAGTCTTTCCTGATTAAATACCACTCTCCTGTTTGATGATTGAATTTATTGCAACCTCTTTCATCCTGATGTTTAACTTAAATTTCCATGTAGTTAAAAGTTGAAGGAATAGCTTGCTTATTTACCATTGAGCCAAGAATCTTTTTTTCTCCATCAGCTCAAAGCTATAGTGAGGCATCCATTACCTCAACAATCTACCAACTTCAGACCTCATAAGTATTTGACTGGGATATTTTTTCATCCTAGGCCAGGCTATCGCAATAGATTGGGATCTATAGTTAATAAATTATAGGATACCTGAAATTGCAATGACCACCAAAGCTATTACAAGGATATCCTGGCATTTTGCTGCCATAGAATTAGTATCAAAATGTGGTAACATGTGAAGTACATGTGTTCTCGCTGTCCCACTTGCAATCCATCTCCGTTTAGCCTAAAATGTTGGGTACTTCGAAGTTCGGCCTATAAATTTACAACCTGGACTACACGTGAAAAAGATCTTAGTTCAAATCTGATCCTTATATTGAACCATGTTGTAAATGAACTGTTTTTTCTTTTGACATAATACTTATTTTGGTCTTTCCAAAGGCGATAAGTTTTGCATAAAAGCCGTCATGGCTGTTCTTTTTAGCATAGTTTCACAGCATGCTCACATTCTACTGAATAATTTTTTGTTCTGCTTCTCAAATATTATCAATTTCTTTAAGATACATATTTTCTTCTTTGTTGTAGTTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTGGTAATTTATTTCCCTTTTTATGCCTTCAGTTTTCTGATCTTTGAATTGAATTTCTATTAGTTTCACTAATGCAATGATCAGGAAACTCCGGCAACATACATGTACTTATTTCAAGTCATGGGTCCATAGCTAGAATTTTCTCCTTCCACGTAATAACTTTTATTTCCATTGCAGTTCAACTTTTTCCTTCCTGTGTTAGTGTGCATGGTAGATTCCTGTAAGATCACATTTTGGTTAGTATCACTTGACATACACAAATTGCAATTCTAATGTGGGCACTGAGAGTTTGTTTTCAGTCTTAACCAGCTCAGTTCCAATATAAGGGGAAGACTAGATGATTCTCATCTCTAATATGCACTGAATAAGTAAAATGTAATCTGGATGGTTCTCTAGTTCCTACCAATTCACCACTGTGCCTTACTGTTTTACGTAATCTTCCCTTTCTCAACACCGTACTTGTTATTTTGAGCCAACTGCAAGTCTGCAACATAACCAATCAATATGCATTTTGGATGTCACACGCAAAGAGTAATAACTACTGCAGCCAAAAGCTCATTACTTTGTACCTGTTCTTCCCCATGTCTTAACTAATAATATGAGCTGTGTGGCTATTGTATTTCACGGCACCGGCGTTGATATTGATCAGTTCTATAAGCAAGTTCTGAATCCTGACTTGGTTTCAAGTGCAGCAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAGGTAAATAAGAAACAAATAGTTTTTGGGGAAGAAACCAATTTTTCATGCGTCTCTAATTTGAGATTGCATAAAAAAGGGAAATCAATTGAACCCGTATTGTATAATACGTAATGTATAACTAATGAATATATGTACTAGTTATAACTGTGGTGTCTGGACCAGCACAGCTCAACTAATCCATAACAACAGCAACTGCTCTTCAAACCCAAGCTATTTGAGATTGGCTATTTCTTCATGAAATTGACTAGTTTTACAGTTGTTGTCAAACCTACCACAACCCTCCTCTTTATCTTGGCTTGGGACTGCAGACTGCCAGTGTGAGAAAGCTTACACAGGCTGAGTTGCATTCATTTATATGAACTCAAATAACAACATACCCAGTATGGTCCCACAAGTGGGGTATTGGGAGGCTGGGGTAGACGTAGAGCTTACCAGTATGTTTGTGGGGAGTTATATGAACTCGATTATTTTTATTTGAAAAATGAACATTTAAGACCAAAACTAGTGGCTGCATTCTTGATCAGAATTTTTGGTCTGTCTAATAAAGCTCTTATGAATGCACCATAAAGGATGTTGACTAAAAGTATAATCGTCATCTATTTCTTATATCTACTTCCTTTGTTCGTGTGTGTGTGGGGGGGGGGGGGGGGGTTGTTAGGGAAGTAATCGGTTATTCAATTTACTTTACCCTTGATTAAGTATGCTCGTTAATATTAATATTGTCTACAGACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTT</genome_strand>
        <mrna_strand>ACACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297160" ref_strand="+" ref_description="SGN-E297160 [cLET-29-A14]">
      <seq>cacagaaaaaagctttcaaagtttagctgcaccgatttcgattctcagtttctacagttttataagtgtatcagacgagtatggaatccaacaggggcaaccaaaatggaattcaacaacttttaggtgcagagcaagaagctcaacacattgtcaatgctgccaggagtgcaaaacaggctagattgaaacaggcaaaggatgaagctgagaaggagatagctgaatttcgtgcattcatggaggccgagttccagagaaagcttgaacagactagcggtgattcgggtgctaatgtcaaacgtcttgatcaagaaacgtttgcaaagatccaacacttgaaagcagaatctgaaagcatctccaacgatgttgtccagatgcttctgaggcaggtaaccacagtaaagaactaagattcatctctgaatgattaccaggatcaagtttatggtcattttctgctgattcttggttctccataattctggttttcttgctacaccagtttaatggttgttctccattttgtgttgtatatttatttatcactattggtcatcttggccctagttgaataaaataaatcatatactgatgttctatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="29412" stop="34531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29712" g_stop="29768" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29769" i_stop="32255" i_length="2487">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32256" g_stop="32369" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="171" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32370" i_stop="33058" i_length="689">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33059" g_stop="33159" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="272" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33160" i_stop="33888" i_length="729">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33889" g_stop="34234" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="618" r_length="346" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E297160" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29712" e_stop="29768"/>
          <exon e_start="32256" e_stop="32369"/>
          <exon e_start="33059" e_stop="33159"/>
          <exon e_start="33889" e_stop="34234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAGGTATTATTGAGGTTTTTTCCGATCATAATATGCTGATTTCAGCTTGAATTGATTAGATCTGGATCAGATGATTGTTTTGACTAATTTTGATATGGGATTCTTCTGAATTTGAAGTACATTTTTGTTTCTGTTGAATAATTTGAGGTTTATGTGAGATTCACAAGCAAATAATGAGTTATAGAAGGTTTTGGAGTTGGTTTGACTTGTGTCGTCAATGTGAAAGTATTCGGAGTTGTGATTAAAGCGGAATGTAGTTGATTCTAACTAGTTTGGAGTTGATGTTTATCTGTTTAGGTGATTGATTGACTTGCTTCTGGAAAAATTGCTTCAGTTTTAGAGCTGAGTGAATTGTTGATAAGGATTATATTGTTTTGATGGATCTGGTTTGAATTTGTTTACTCCGCTGTAGATATAATCAACTATTTGGTTTCTGCAAAATGATGAGGTCTATGTGAGCTTCACAAACAATGATGAGTTATAGATGCAGTTGGTTTGACCTTCAATCACTAGTGTATAAGTATTTCAAGTTAAGATTAAAGTAAAACGTAGTTGATTCTAACTAGTTTGGAGTTGAGGTTTAGGTGATTGATTGACTTGTTTATGGGAAATTGGTTTGGATTTAAAGATGATTGAATATTTGATAAGGATATATTGTTTTGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGGTTTCTACAAAATGGTTTGAGATTTATGTGAGCTCTGCAAAATGATTTGAGATCTATGTGAACTCCACAAACAAATATGAGTTAACGTTTTACATTTGGTTGCCTATGAACTTCCAGTGTTAAATTATTAAGAATTGTGATTAAAGCAGAATGTAGTTGATTCTACATAGTTTAGAGTTGTTGTTTAGGTGATTGATTGATTGTTTCTGGAAAAGGTTTCGTTAAAGAGCTGATTGAATTGTTGATAAGGATATATTGTATTAGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGTTTCTGCAAAATGCTTTGAGGTCTATGGTGAGATTCACAAACAATAATGAACTGTAGAAGATTTGCTGTTGGTTGACCTTGAATCGCCAGAGTACAAGTATACAGAATTGCTATTAAAGTGAAATGCTGTTGATTCTAACTAGTCTGGAGTTGAGATTTAGGTGATTGATTGACTTGTTTCTGGAAAATTGGTTGGAATTAGAGCTGATTGAATTTATTGATTAAAATATATTGTTTTGATGATCTGGTTTGAATTTGCTTTCTCCAATTTAGATATAATCAACTATTTGTTTCTGCAAAATGATTTGAGTCTATGTGAGATTCACAAACAAATAATGAGTTATAGAAGGTTTGGCAGTTAGTTTGACCTTGAATCGCCAGTGTGAAAATATTCCGAATTGTGATTAAATCGGAATGTAGCTGACACTAACTAATAGAGTTGAGCTGTAGGTGATTGATAATTTCTGGTAAATATGCTTCAGTTTTAGAGCTGATTGATTTGTTGATAGTGATATCTTTGTGTTGATGGATCTATTATTTCTATAGAACAATTCTAGGAAGAGTAACTTGTGCAGTTTGACTTGGACCAAAAGTAGATGAAGGAGACCAAAGAAGAAAGGAAGGAAACAAAAGTAGAAGAATTTCCTCACTTTTAACTAGAGAAATTGTTGATTGAGTAAAAGATTTTGTATTTTGGGAGGAGAATTGTTTGAGCATAGGCTGTTTGATCCAGTCTTTCCTGATTAAATACCACTCTCCTGTTTGATGATTGAATTTATTGCAACCTCTTTCATCCTGATGTTTAACTTAAATTTCCATGTAGTTAAAAGTTGAAGGAATAGCTTGCTTATTTACCATTGAGCCAAGAATCTTTTTTTCTCCATCAGCTCAAAGCTATAGTGAGGCATCCATTACCTCAACAATCTACCAACTTCAGACCTCATAAGTATTTGACTGGGATATTTTTTCATCCTAGGCCAGGCTATCGCAATAGATTGGGATCTATAGTTAATAAATTATAGGATACCTGAAATTGCAATGACCACCAAAGCTATTACAAGGATATCCTGGCATTTTGCTGCCATAGAATTAGTATCAAAATGTGGTAACATGTGAAGTACATGTGTTCTCGCTGTCCCACTTGCAATCCATCTCCGTTTAGCCTAAAATGTTGGGTACTTCGAAGTTCGGCCTATAAATTTACAACCTGGACTACACGTGAAAAAGATCTTAGTTCAAATCTGATCCTTATATTGAACCATGTTGTAAATGAACTGTTTTTTCTTTTGACATAATACTTATTTTGGTCTTTCCAAAGGCGATAAGTTTTGCATAAAAGCCGTCATGGCTGTTCTTTTTAGCATAGTTTCACAGCATGCTCACATTCTACTGAATAATTTTTTGTTCTGCTTCTCAAATATTATCAATTTCTTTAAGATACATATTTTCTTCTTTGTTGTAGTTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTGGTAATTTATTTCCCTTTTTATGCCTTCAGTTTTCTGATCTTTGAATTGAATTTCTATTAGTTTCACTAATGCAATGATCAGGAAACTCCGGCAACATACATGTACTTATTTCAAGTCATGGGTCCATAGCTAGAATTTTCTCCTTCCACGTAATAACTTTTATTTCCATTGCAGTTCAACTTTTTCCTTCCTGTGTTAGTGTGCATGGTAGATTCCTGTAAGATCACATTTTGGTTAGTATCACTTGACATACACAAATTGCAATTCTAATGTGGGCACTGAGAGTTTGTTTTCAGTCTTAACCAGCTCAGTTCCAATATAAGGGGAAGACTAGATGATTCTCATCTCTAATATGCACTGAATAAGTAAAATGTAATCTGGATGGTTCTCTAGTTCCTACCAATTCACCACTGTGCCTTACTGTTTTACGTAATCTTCCCTTTCTCAACACCGTACTTGTTATTTTGAGCCAACTGCAAGTCTGCAACATAACCAATCAATATGCATTTTGGATGTCACACGCAAAGAGTAATAACTACTGCAGCCAAAAGCTCATTACTTTGTACCTGTTCTTCCCCATGTCTTAACTAATAATATGAGCTGTGTGGCTATTGTATTTCACGGCACCGGCGTTGATATTGATCAGTTCTATAAGCAAGTTCTGAATCCTGACTTGGTTTCAAGTGCAGCAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAGGTAAATAAGAAACAAATAGTTTTTGGGGAAGAAACCAATTTTTCATGCGTCTCTAATTTGAGATTGCATAAAAAAGGGAAATCAATTGAACCCGTATTGTATAATACGTAATGTATAACTAATGAATATATGTACTAGTTATAACTGTGGTGTCTGGACCAGCACAGCTCAACTAATCCATAACAACAGCAACTGCTCTTCAAACCCAAGCTATTTGAGATTGGCTATTTCTTCATGAAATTGACTAGTTTTACAGTTGTTGTCAAACCTACCACAACCCTCCTCTTTATCTTGGCTTGGGACTGCAGACTGCCAGTGTGAGAAAGCTTACACAGGCTGAGTTGCATTCATTTATATGAACTCAAATAACAACATACCCAGTATGGTCCCACAAGTGGGGTATTGGGAGGCTGGGGTAGACGTAGAGCTTACCAGTATGTTTGTGGGGAGTTATATGAACTCGATTATTTTTATTTGAAAAATGAACATTTAAGACCAAAACTAGTGGCTGCATTCTTGATCAGAATTTTTGGTCTGTCTAATAAAGCTCTTATGAATGCACCATAAAGGATGTTGACTAAAAGTATAATCGTCATCTATTTCTTATATCTACTTCCTTTGTTCGTGTGTGTGTGGGGGGGGGGGGGGGGGTTGTTAGGGAAGTAATCGGTTATTCAATTTACTTTACCCTTGATTAAGTATGCTCGTTAATATTAATATTGTCTACAGACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTT</genome_strand>
        <mrna_strand>CACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308725" ref_strand="+" ref_description="SGN-E308725 [cLEZ-11-I8]">
      <seq>agaaaaaagctttcaaagtttagctgcaccgatttcgattctcagtttctacagttttataagtgtatcagacgagtatggaatccaacaggggcaaccaaaatggaattcaacaacttttaggtgcagagcaagaagctcaacacattgtcaatgctgccaggagtgcaaaacaggctagattgaaacaggcaaaggatgaagctgagaaggagatagctgaatttcgtgcattcatggaggccgagttccagagaaagcttgaacagactagcggtgattcgggtgctaatgtcaaacgtcttgatcaagaaacgtttgcaaagatccaacacttgaaagcagaatctgaaagcatctccaacgatgttgtccagatgcttctgaggcaggttaccacagtaaagaactaagattcatctctgaatgattaccaggatcaagttgatggtcattttctgctgattcttggatctccataattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="29415" stop="34405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29715" g_stop="29768" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29769" i_stop="32255" i_length="2487">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32256" g_stop="32369" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="168" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32370" i_stop="33058" i_length="689">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33059" g_stop="33159" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="269" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33160" i_stop="33888" i_length="729">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33889" g_stop="34105" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="486" r_length="217" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E308725" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29715" e_stop="29768"/>
          <exon e_start="32256" e_stop="32369"/>
          <exon e_start="33059" e_stop="33159"/>
          <exon e_start="33889" e_stop="34105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAGGTATTATTGAGGTTTTTTCCGATCATAATATGCTGATTTCAGCTTGAATTGATTAGATCTGGATCAGATGATTGTTTTGACTAATTTTGATATGGGATTCTTCTGAATTTGAAGTACATTTTTGTTTCTGTTGAATAATTTGAGGTTTATGTGAGATTCACAAGCAAATAATGAGTTATAGAAGGTTTTGGAGTTGGTTTGACTTGTGTCGTCAATGTGAAAGTATTCGGAGTTGTGATTAAAGCGGAATGTAGTTGATTCTAACTAGTTTGGAGTTGATGTTTATCTGTTTAGGTGATTGATTGACTTGCTTCTGGAAAAATTGCTTCAGTTTTAGAGCTGAGTGAATTGTTGATAAGGATTATATTGTTTTGATGGATCTGGTTTGAATTTGTTTACTCCGCTGTAGATATAATCAACTATTTGGTTTCTGCAAAATGATGAGGTCTATGTGAGCTTCACAAACAATGATGAGTTATAGATGCAGTTGGTTTGACCTTCAATCACTAGTGTATAAGTATTTCAAGTTAAGATTAAAGTAAAACGTAGTTGATTCTAACTAGTTTGGAGTTGAGGTTTAGGTGATTGATTGACTTGTTTATGGGAAATTGGTTTGGATTTAAAGATGATTGAATATTTGATAAGGATATATTGTTTTGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGGTTTCTACAAAATGGTTTGAGATTTATGTGAGCTCTGCAAAATGATTTGAGATCTATGTGAACTCCACAAACAAATATGAGTTAACGTTTTACATTTGGTTGCCTATGAACTTCCAGTGTTAAATTATTAAGAATTGTGATTAAAGCAGAATGTAGTTGATTCTACATAGTTTAGAGTTGTTGTTTAGGTGATTGATTGATTGTTTCTGGAAAAGGTTTCGTTAAAGAGCTGATTGAATTGTTGATAAGGATATATTGTATTAGATGGATCTGGTTTGAATTTGTTACTCTGCTTTAGATATAATCAACTATTTGTTTCTGCAAAATGCTTTGAGGTCTATGGTGAGATTCACAAACAATAATGAACTGTAGAAGATTTGCTGTTGGTTGACCTTGAATCGCCAGAGTACAAGTATACAGAATTGCTATTAAAGTGAAATGCTGTTGATTCTAACTAGTCTGGAGTTGAGATTTAGGTGATTGATTGACTTGTTTCTGGAAAATTGGTTGGAATTAGAGCTGATTGAATTTATTGATTAAAATATATTGTTTTGATGATCTGGTTTGAATTTGCTTTCTCCAATTTAGATATAATCAACTATTTGTTTCTGCAAAATGATTTGAGTCTATGTGAGATTCACAAACAAATAATGAGTTATAGAAGGTTTGGCAGTTAGTTTGACCTTGAATCGCCAGTGTGAAAATATTCCGAATTGTGATTAAATCGGAATGTAGCTGACACTAACTAATAGAGTTGAGCTGTAGGTGATTGATAATTTCTGGTAAATATGCTTCAGTTTTAGAGCTGATTGATTTGTTGATAGTGATATCTTTGTGTTGATGGATCTATTATTTCTATAGAACAATTCTAGGAAGAGTAACTTGTGCAGTTTGACTTGGACCAAAAGTAGATGAAGGAGACCAAAGAAGAAAGGAAGGAAACAAAAGTAGAAGAATTTCCTCACTTTTAACTAGAGAAATTGTTGATTGAGTAAAAGATTTTGTATTTTGGGAGGAGAATTGTTTGAGCATAGGCTGTTTGATCCAGTCTTTCCTGATTAAATACCACTCTCCTGTTTGATGATTGAATTTATTGCAACCTCTTTCATCCTGATGTTTAACTTAAATTTCCATGTAGTTAAAAGTTGAAGGAATAGCTTGCTTATTTACCATTGAGCCAAGAATCTTTTTTTCTCCATCAGCTCAAAGCTATAGTGAGGCATCCATTACCTCAACAATCTACCAACTTCAGACCTCATAAGTATTTGACTGGGATATTTTTTCATCCTAGGCCAGGCTATCGCAATAGATTGGGATCTATAGTTAATAAATTATAGGATACCTGAAATTGCAATGACCACCAAAGCTATTACAAGGATATCCTGGCATTTTGCTGCCATAGAATTAGTATCAAAATGTGGTAACATGTGAAGTACATGTGTTCTCGCTGTCCCACTTGCAATCCATCTCCGTTTAGCCTAAAATGTTGGGTACTTCGAAGTTCGGCCTATAAATTTACAACCTGGACTACACGTGAAAAAGATCTTAGTTCAAATCTGATCCTTATATTGAACCATGTTGTAAATGAACTGTTTTTTCTTTTGACATAATACTTATTTTGGTCTTTCCAAAGGCGATAAGTTTTGCATAAAAGCCGTCATGGCTGTTCTTTTTAGCATAGTTTCACAGCATGCTCACATTCTACTGAATAATTTTTTGTTCTGCTTCTCAAATATTATCAATTTCTTTAAGATACATATTTTCTTCTTTGTTGTAGTTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTGGTAATTTATTTCCCTTTTTATGCCTTCAGTTTTCTGATCTTTGAATTGAATTTCTATTAGTTTCACTAATGCAATGATCAGGAAACTCCGGCAACATACATGTACTTATTTCAAGTCATGGGTCCATAGCTAGAATTTTCTCCTTCCACGTAATAACTTTTATTTCCATTGCAGTTCAACTTTTTCCTTCCTGTGTTAGTGTGCATGGTAGATTCCTGTAAGATCACATTTTGGTTAGTATCACTTGACATACACAAATTGCAATTCTAATGTGGGCACTGAGAGTTTGTTTTCAGTCTTAACCAGCTCAGTTCCAATATAAGGGGAAGACTAGATGATTCTCATCTCTAATATGCACTGAATAAGTAAAATGTAATCTGGATGGTTCTCTAGTTCCTACCAATTCACCACTGTGCCTTACTGTTTTACGTAATCTTCCCTTTCTCAACACCGTACTTGTTATTTTGAGCCAACTGCAAGTCTGCAACATAACCAATCAATATGCATTTTGGATGTCACACGCAAAGAGTAATAACTACTGCAGCCAAAAGCTCATTACTTTGTACCTGTTCTTCCCCATGTCTTAACTAATAATATGAGCTGTGTGGCTATTGTATTTCACGGCACCGGCGTTGATATTGATCAGTTCTATAAGCAAGTTCTGAATCCTGACTTGGTTTCAAGTGCAGCAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAGGTAAATAAGAAACAAATAGTTTTTGGGGAAGAAACCAATTTTTCATGCGTCTCTAATTTGAGATTGCATAAAAAAGGGAAATCAATTGAACCCGTATTGTATAATACGTAATGTATAACTAATGAATATATGTACTAGTTATAACTGTGGTGTCTGGACCAGCACAGCTCAACTAATCCATAACAACAGCAACTGCTCTTCAAACCCAAGCTATTTGAGATTGGCTATTTCTTCATGAAATTGACTAGTTTTACAGTTGTTGTCAAACCTACCACAACCCTCCTCTTTATCTTGGCTTGGGACTGCAGACTGCCAGTGTGAGAAAGCTTACACAGGCTGAGTTGCATTCATTTATATGAACTCAAATAACAACATACCCAGTATGGTCCCACAAGTGGGGTATTGGGAGGCTGGGGTAGACGTAGAGCTTACCAGTATGTTTGTGGGGAGTTATATGAACTCGATTATTTTTATTTGAAAAATGAACATTTAAGACCAAAACTAGTGGCTGCATTCTTGATCAGAATTTTTGGTCTGTCTAATAAAGCTCTTATGAATGCACCATAAAGGATGTTGACTAAAAGTATAATCGTCATCTATTTCTTATATCTACTTCCTTTGTTCGTGTGTGTGTGGGGGGGGGGGGGGGGGTTGTTAGGGAAGTAATCGGTTATTCAATTTACTTTACCCTTGATTAAGTATGCTCGTTAATATTAATATTGTCTACAGACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCT</genome_strand>
        <mrna_strand>AGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTTACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTGATGGTCATTTTCTGCTGATTCTTGGATCTCCATAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336677" ref_strand="+" ref_description="SGN-E336677 [cTOE-4-L10]">
      <seq>ctcagtttctacagttttataagtgtatcagacgagtatggaatccaacaggggcaaccaaaatggaattcaacaacttttaggtgcagagcaagaagctcaacacattgtcaatgctgccaggagtgcaaaacaggctagattgaaacaggcaaaggatgaagctgagaaggagatagctgaatttcgtgcattcatggaggccgagttccagagaaagcttgaacagactagcggtgattcgggtgctaatgtcaaacgtcttgatcaagaaacgtttgcaaagatccaacacttgaaagcagaatctgaaagcatctccaacgatgttgtccagatgcttctgaggcaggtaaccacagtaaagaactaagattcatctctgaatgattaccaggatcaagtttatggtcattttctgctgattcttggttctccataattctggttttcttgctacaccagtttaatggttgttctccattttgtggtggatatttatttatcactattggtcatcttggccctagttgaataaaataaatcatatactgatgttctatgaagacaaattttggatataacttacccacacaatgtgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="31947" stop="34564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32256" g_stop="32369" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="128" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32370" i_stop="33058" i_length="689">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33059" g_stop="33159" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="229" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33160" i_stop="33888" i_length="729">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33889" g_stop="34264" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="605" r_length="376" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E336677" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32256" e_stop="32369"/>
          <exon e_start="33059" e_stop="33159"/>
          <exon e_start="33889" e_stop="34264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTGGTAATTTATTTCCCTTTTTATGCCTTCAGTTTTCTGATCTTTGAATTGAATTTCTATTAGTTTCACTAATGCAATGATCAGGAAACTCCGGCAACATACATGTACTTATTTCAAGTCATGGGTCCATAGCTAGAATTTTCTCCTTCCACGTAATAACTTTTATTTCCATTGCAGTTCAACTTTTTCCTTCCTGTGTTAGTGTGCATGGTAGATTCCTGTAAGATCACATTTTGGTTAGTATCACTTGACATACACAAATTGCAATTCTAATGTGGGCACTGAGAGTTTGTTTTCAGTCTTAACCAGCTCAGTTCCAATATAAGGGGAAGACTAGATGATTCTCATCTCTAATATGCACTGAATAAGTAAAATGTAATCTGGATGGTTCTCTAGTTCCTACCAATTCACCACTGTGCCTTACTGTTTTACGTAATCTTCCCTTTCTCAACACCGTACTTGTTATTTTGAGCCAACTGCAAGTCTGCAACATAACCAATCAATATGCATTTTGGATGTCACACGCAAAGAGTAATAACTACTGCAGCCAAAAGCTCATTACTTTGTACCTGTTCTTCCCCATGTCTTAACTAATAATATGAGCTGTGTGGCTATTGTATTTCACGGCACCGGCGTTGATATTGATCAGTTCTATAAGCAAGTTCTGAATCCTGACTTGGTTTCAAGTGCAGCAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAGGTAAATAAGAAACAAATAGTTTTTGGGGAAGAAACCAATTTTTCATGCGTCTCTAATTTGAGATTGCATAAAAAAGGGAAATCAATTGAACCCGTATTGTATAATACGTAATGTATAACTAATGAATATATGTACTAGTTATAACTGTGGTGTCTGGACCAGCACAGCTCAACTAATCCATAACAACAGCAACTGCTCTTCAAACCCAAGCTATTTGAGATTGGCTATTTCTTCATGAAATTGACTAGTTTTACAGTTGTTGTCAAACCTACCACAACCCTCCTCTTTATCTTGGCTTGGGACTGCAGACTGCCAGTGTGAGAAAGCTTACACAGGCTGAGTTGCATTCATTTATATGAACTCAAATAACAACATACCCAGTATGGTCCCACAAGTGGGGTATTGGGAGGCTGGGGTAGACGTAGAGCTTACCAGTATGTTTGTGGGGAGTTATATGAACTCGATTATTTTTATTTGAAAAATGAACATTTAAGACCAAAACTAGTGGCTGCATTCTTGATCAGAATTTTTGGTCTGTCTAATAAAGCTCTTATGAATGCACCATAAAGGATGTTGACTAAAAGTATAATCGTCATCTATTTCTTATATCTACTTCCTTTGTTCGTGTGTGTGTGGGGGGGGGGGGGGGGGTTGTTAGGGAAGTAATCGGTTATTCAATTTACTTTACCCTTGATTAAGTATGCTCGTTAATATTAATATTGTCTACAGACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTTTGGATATAACTTACCCACACAATGTGATTA</genome_strand>
        <mrna_strand>TTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGGTGGATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTTTGGATATAACTTACCCACACAATGTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336682" ref_strand="+" ref_description="SGN-E336682 [cTOE-4-N10]">
      <seq>ctcagtttctacagttttataagtgtatcagacgagtatggaatccaacaggggcaaccaaaatggaattcaacaacttttaggtgcagagcaagaagctcaacacattgtcaatgctgccaggagtgcaaaacaggctagattgaaacaggcaaaggatgaagctgagaaggagatagctgaatttcgtgcattcatggaggccgagttccagagaaagcttgaacagactagcggtgattcgggtgctaatgtcaaacgtcttgatcaagaaacgtttgcaaagatccaacacttgaaagcagaatctgaaagcatctccaacgatgttgtccagatgcttctgaggcaggtaaccacaggtaagaactaagattcatctctgaatgattaccaggatcaagtttatggtcattttctgctgattcttggttctccataattctggttttcttgctacaccagtttaatgggtgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="31947" stop="34438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32256" g_stop="32369" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="128" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32370" i_stop="33058" i_length="689">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33059" g_stop="33159" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="229" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33160" i_stop="33888" i_length="729">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33889" g_stop="34138" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="479" r_length="250" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E336682" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32256" e_stop="32369"/>
          <exon e_start="33059" e_stop="33159"/>
          <exon e_start="33889" e_stop="34138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTGGTAATTTATTTCCCTTTTTATGCCTTCAGTTTTCTGATCTTTGAATTGAATTTCTATTAGTTTCACTAATGCAATGATCAGGAAACTCCGGCAACATACATGTACTTATTTCAAGTCATGGGTCCATAGCTAGAATTTTCTCCTTCCACGTAATAACTTTTATTTCCATTGCAGTTCAACTTTTTCCTTCCTGTGTTAGTGTGCATGGTAGATTCCTGTAAGATCACATTTTGGTTAGTATCACTTGACATACACAAATTGCAATTCTAATGTGGGCACTGAGAGTTTGTTTTCAGTCTTAACCAGCTCAGTTCCAATATAAGGGGAAGACTAGATGATTCTCATCTCTAATATGCACTGAATAAGTAAAATGTAATCTGGATGGTTCTCTAGTTCCTACCAATTCACCACTGTGCCTTACTGTTTTACGTAATCTTCCCTTTCTCAACACCGTACTTGTTATTTTGAGCCAACTGCAAGTCTGCAACATAACCAATCAATATGCATTTTGGATGTCACACGCAAAGAGTAATAACTACTGCAGCCAAAAGCTCATTACTTTGTACCTGTTCTTCCCCATGTCTTAACTAATAATATGAGCTGTGTGGCTATTGTATTTCACGGCACCGGCGTTGATATTGATCAGTTCTATAAGCAAGTTCTGAATCCTGACTTGGTTTCAAGTGCAGCAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAGGTAAATAAGAAACAAATAGTTTTTGGGGAAGAAACCAATTTTTCATGCGTCTCTAATTTGAGATTGCATAAAAAAGGGAAATCAATTGAACCCGTATTGTATAATACGTAATGTATAACTAATGAATATATGTACTAGTTATAACTGTGGTGTCTGGACCAGCACAGCTCAACTAATCCATAACAACAGCAACTGCTCTTCAAACCCAAGCTATTTGAGATTGGCTATTTCTTCATGAAATTGACTAGTTTTACAGTTGTTGTCAAACCTACCACAACCCTCCTCTTTATCTTGGCTTGGGACTGCAGACTGCCAGTGTGAGAAAGCTTACACAGGCTGAGTTGCATTCATTTATATGAACTCAAATAACAACATACCCAGTATGGTCCCACAAGTGGGGTATTGGGAGGCTGGGGTAGACGTAGAGCTTACCAGTATGTTTGTGGGGAGTTATATGAACTCGATTATTTTTATTTGAAAAATGAACATTTAAGACCAAAACTAGTGGCTGCATTCTTGATCAGAATTTTTGGTCTGTCTAATAAAGCTCTTATGAATGCACCATAAAGGATGTTGACTAAAAGTATAATCGTCATCTATTTCTTATATCTACTTCCTTTGTTCGTGTGTGTGTGGGGGGGGGGGGGGGGGTTGTTAGGGAAGTAATCGGTTATTCAATTTACTTTACCCTTGATTAAGTATGCTCGTTAATATTAATATTGTCTACAGACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTC</genome_strand>
        <mrna_strand>TTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGGTAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGGTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335441" ref_strand="+" ref_description="SGN-E335441 [cTOE-2-H22]">
      <seq>taagtgtatcaaacgagtatggaatccaacaggggcaaccaaaatggaattcaacaacttttaggtgcagagcaagaagctcaacacattgtcaatgctgccaggagtgcaaaacaggctagattgaaacaggcaaaggatgaagctgagaaggagatagctgaatttcgtgcattcatggaggccgagttccagagaaagctcgaacagactagcggtgattcaggtgctaatgtcaaacgtcttgatcaagaaacgtctgcaaagatccaacacttgaaagcagaatctgaaagcatctccaacgatgttgtccagatgcttctgaggcaggtaaccacagtaaagaactaagattcatctctgaatgattaccacgatcaagtgtatggtcattttctgctgattcttggttctccataattctgggtttcttgctacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="31961" stop="34422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32261" g_stop="32369" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32370" i_stop="33058" i_length="689">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33059" g_stop="33159" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="210" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33160" i_stop="33888" i_length="729">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33889" g_stop="34122" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="444" r_length="234" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E335441" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32261" e_stop="32369"/>
          <exon e_start="33059" e_stop="33159"/>
          <exon e_start="33889" e_stop="34122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTGGTAATTTATTTCCCTTTTTATGCCTTCAGTTTTCTGATCTTTGAATTGAATTTCTATTAGTTTCACTAATGCAATGATCAGGAAACTCCGGCAACATACATGTACTTATTTCAAGTCATGGGTCCATAGCTAGAATTTTCTCCTTCCACGTAATAACTTTTATTTCCATTGCAGTTCAACTTTTTCCTTCCTGTGTTAGTGTGCATGGTAGATTCCTGTAAGATCACATTTTGGTTAGTATCACTTGACATACACAAATTGCAATTCTAATGTGGGCACTGAGAGTTTGTTTTCAGTCTTAACCAGCTCAGTTCCAATATAAGGGGAAGACTAGATGATTCTCATCTCTAATATGCACTGAATAAGTAAAATGTAATCTGGATGGTTCTCTAGTTCCTACCAATTCACCACTGTGCCTTACTGTTTTACGTAATCTTCCCTTTCTCAACACCGTACTTGTTATTTTGAGCCAACTGCAAGTCTGCAACATAACCAATCAATATGCATTTTGGATGTCACACGCAAAGAGTAATAACTACTGCAGCCAAAAGCTCATTACTTTGTACCTGTTCTTCCCCATGTCTTAACTAATAATATGAGCTGTGTGGCTATTGTATTTCACGGCACCGGCGTTGATATTGATCAGTTCTATAAGCAAGTTCTGAATCCTGACTTGGTTTCAAGTGCAGCAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAGGTAAATAAGAAACAAATAGTTTTTGGGGAAGAAACCAATTTTTCATGCGTCTCTAATTTGAGATTGCATAAAAAAGGGAAATCAATTGAACCCGTATTGTATAATACGTAATGTATAACTAATGAATATATGTACTAGTTATAACTGTGGTGTCTGGACCAGCACAGCTCAACTAATCCATAACAACAGCAACTGCTCTTCAAACCCAAGCTATTTGAGATTGGCTATTTCTTCATGAAATTGACTAGTTTTACAGTTGTTGTCAAACCTACCACAACCCTCCTCTTTATCTTGGCTTGGGACTGCAGACTGCCAGTGTGAGAAAGCTTACACAGGCTGAGTTGCATTCATTTATATGAACTCAAATAACAACATACCCAGTATGGTCCCACAAGTGGGGTATTGGGAGGCTGGGGTAGACGTAGAGCTTACCAGTATGTTTGTGGGGAGTTATATGAACTCGATTATTTTTATTTGAAAAATGAACATTTAAGACCAAAACTAGTGGCTGCATTCTTGATCAGAATTTTTGGTCTGTCTAATAAAGCTCTTATGAATGCACCATAAAGGATGTTGACTAAAAGTATAATCGTCATCTATTTCTTATATCTACTTCCTTTGTTCGTGTGTGTGTGGGGGGGGGGGGGGGGGTTGTTAGGGAAGTAATCGGTTATTCAATTTACTTTACCCTTGATTAAGTATGCTCGTTAATATTAATATTGTCTACAGACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACC</genome_strand>
        <mrna_strand>TAAGTGTATCAAACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTCGAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCGGTGATTCAGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTCTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCACGATCAAGTGTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGGTTTCTTGCTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556365" ref_strand="-" ref_description="SGN-E556365 [cTSD-3-E12]">
      <seq>ggaatccaacaggggcaaccaaaatggaattcaacaacttttaggtgcagagcaagaagctcaacacattgtcaatgctgccaggagtgcaaaacaggctagattgaaacaggcaaaggatgaagctgagaaggagatagctgaatttcgtgcattcatggaggccgagttccagagaaagcttgaacagactagcggtgattcgggtgctaatgtcaaacgtcttgatcaagaaacgtttgcaaagatccaacacttgaaagcagaatctgaaagcatctccaacgatgttgtccagatgcttctgaggcaggtaaccacagtaaagaactaagattcatctctgaatgattaccaggatcaagtttatggtcattttctgctgattcttggttctccataattctggttttcttgctacaccagtttaatggttgttctccattttgtgttgtatatttatttatcactattggtcatcttggccctagttgaataaaataaatcatatactgatgttctatgaagacaaattttggatataacttacccacacaatgtgattatttcccgaatgaatgaaatacgtgttatgcatatagtttttctcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="31981" stop="34610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32281" g_stop="32369" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32370" i_stop="33058" i_length="689">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33059" g_stop="33159" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="190" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33160" i_stop="33888" i_length="729">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33889" g_stop="34316" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="618" r_length="428" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E556365" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556365" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32281" e_stop="32369"/>
          <exon e_start="33059" e_stop="33159"/>
          <exon e_start="33889" e_stop="34316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTGGTAATTTATTTCCCTTTTTATGCCTTCAGTTTTCTGATCTTTGAATTGAATTTCTATTAGTTTCACTAATGCAATGATCAGGAAACTCCGGCAACATACATGTACTTATTTCAAGTCATGGGTCCATAGCTAGAATTTTCTCCTTCCACGTAATAACTTTTATTTCCATTGCAGTTCAACTTTTTCCTTCCTGTGTTAGTGTGCATGGTAGATTCCTGTAAGATCACATTTTGGTTAGTATCACTTGACATACACAAATTGCAATTCTAATGTGGGCACTGAGAGTTTGTTTTCAGTCTTAACCAGCTCAGTTCCAATATAAGGGGAAGACTAGATGATTCTCATCTCTAATATGCACTGAATAAGTAAAATGTAATCTGGATGGTTCTCTAGTTCCTACCAATTCACCACTGTGCCTTACTGTTTTACGTAATCTTCCCTTTCTCAACACCGTACTTGTTATTTTGAGCCAACTGCAAGTCTGCAACATAACCAATCAATATGCATTTTGGATGTCACACGCAAAGAGTAATAACTACTGCAGCCAAAAGCTCATTACTTTGTACCTGTTCTTCCCCATGTCTTAACTAATAATATGAGCTGTGTGGCTATTGTATTTCACGGCACCGGCGTTGATATTGATCAGTTCTATAAGCAAGTTCTGAATCCTGACTTGGTTTCAAGTGCAGCAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAGGTAAATAAGAAACAAATAGTTTTTGGGGAAGAAACCAATTTTTCATGCGTCTCTAATTTGAGATTGCATAAAAAAGGGAAATCAATTGAACCCGTATTGTATAATACGTAATGTATAACTAATGAATATATGTACTAGTTATAACTGTGGTGTCTGGACCAGCACAGCTCAACTAATCCATAACAACAGCAACTGCTCTTCAAACCCAAGCTATTTGAGATTGGCTATTTCTTCATGAAATTGACTAGTTTTACAGTTGTTGTCAAACCTACCACAACCCTCCTCTTTATCTTGGCTTGGGACTGCAGACTGCCAGTGTGAGAAAGCTTACACAGGCTGAGTTGCATTCATTTATATGAACTCAAATAACAACATACCCAGTATGGTCCCACAAGTGGGGTATTGGGAGGCTGGGGTAGACGTAGAGCTTACCAGTATGTTTGTGGGGAGTTATATGAACTCGATTATTTTTATTTGAAAAATGAACATTTAAGACCAAAACTAGTGGCTGCATTCTTGATCAGAATTTTTGGTCTGTCTAATAAAGCTCTTATGAATGCACCATAAAGGATGTTGACTAAAAGTATAATCGTCATCTATTTCTTATATCTACTTCCTTTGTTCGTGTGTGTGTGGGGGGGGGGGGGGGGGTTGTTAGGGAAGTAATCGGTTATTCAATTTACTTTACCCTTGATTAAGTATGCTCGTTAATATTAATATTGTCTACAGACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTTTGGATATAACTTACCCACACAATGTGATTATTTCCCGAATGAATGAAATACGTGTTATGCATATAGTTTTTCTCAAGTGATA</genome_strand>
        <mrna_strand>GGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTTTGGATATAACTTACCCACACAATGTGATTATTTCCCGAATGAATGAAATACGTGTTATGCATATAGTTTTTCTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393370" ref_strand="+" ref_description="SGN-E393370 [TUS-38-F11](-)">
      <seq>caaccaggggcaaaccaaaatggaattcaacaacttttaggtgcagagcaagaagctcaacacattgtcaatgctgccaggagtgcaaaacaggctagattgaaacaggcaaaggatgaagctgagaaggagatagctgaatttcgtgcattcatggaggccgagttccagagaaagcttgaacagactagcggtgattcgggtgctaatgtcaaacgtcttgatcaagaaacgtttgcaaagatccaacacttgaaagcagaatctgaaagcatctccaacgatgttgtccagatgcttctgaggcaggtaaccacagtaaagaactaagattcatctctgaatgattaccaggatcaagtttatggtcattttctgctgattcttggttctccataattctggttttcttgctacaccagtttaatggttgttctccattttgtgttgtatatttatttatcactattggtcatcttggccctagttgaataaaataaatcatatactgatgttctatgaagacaaattttggatataacttacccacacaatgtgattatttcccgaatgaatgaaatacgtgttatgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="31987" stop="34599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32286" g_stop="32369" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32370" i_stop="33058" i_length="689">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33059" g_stop="33159" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="186" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33160" i_stop="33888" i_length="729">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33889" g_stop="34303" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="601" r_length="415" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E393370" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32286" e_stop="32369"/>
          <exon e_start="33059" e_stop="33159"/>
          <exon e_start="33889" e_stop="34303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACAGGGGC-AACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTGGTAATTTATTTCCCTTTTTATGCCTTCAGTTTTCTGATCTTTGAATTGAATTTCTATTAGTTTCACTAATGCAATGATCAGGAAACTCCGGCAACATACATGTACTTATTTCAAGTCATGGGTCCATAGCTAGAATTTTCTCCTTCCACGTAATAACTTTTATTTCCATTGCAGTTCAACTTTTTCCTTCCTGTGTTAGTGTGCATGGTAGATTCCTGTAAGATCACATTTTGGTTAGTATCACTTGACATACACAAATTGCAATTCTAATGTGGGCACTGAGAGTTTGTTTTCAGTCTTAACCAGCTCAGTTCCAATATAAGGGGAAGACTAGATGATTCTCATCTCTAATATGCACTGAATAAGTAAAATGTAATCTGGATGGTTCTCTAGTTCCTACCAATTCACCACTGTGCCTTACTGTTTTACGTAATCTTCCCTTTCTCAACACCGTACTTGTTATTTTGAGCCAACTGCAAGTCTGCAACATAACCAATCAATATGCATTTTGGATGTCACACGCAAAGAGTAATAACTACTGCAGCCAAAAGCTCATTACTTTGTACCTGTTCTTCCCCATGTCTTAACTAATAATATGAGCTGTGTGGCTATTGTATTTCACGGCACCGGCGTTGATATTGATCAGTTCTATAAGCAAGTTCTGAATCCTGACTTGGTTTCAAGTGCAGCAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAGGTAAATAAGAAACAAATAGTTTTTGGGGAAGAAACCAATTTTTCATGCGTCTCTAATTTGAGATTGCATAAAAAAGGGAAATCAATTGAACCCGTATTGTATAATACGTAATGTATAACTAATGAATATATGTACTAGTTATAACTGTGGTGTCTGGACCAGCACAGCTCAACTAATCCATAACAACAGCAACTGCTCTTCAAACCCAAGCTATTTGAGATTGGCTATTTCTTCATGAAATTGACTAGTTTTACAGTTGTTGTCAAACCTACCACAACCCTCCTCTTTATCTTGGCTTGGGACTGCAGACTGCCAGTGTGAGAAAGCTTACACAGGCTGAGTTGCATTCATTTATATGAACTCAAATAACAACATACCCAGTATGGTCCCACAAGTGGGGTATTGGGAGGCTGGGGTAGACGTAGAGCTTACCAGTATGTTTGTGGGGAGTTATATGAACTCGATTATTTTTATTTGAAAAATGAACATTTAAGACCAAAACTAGTGGCTGCATTCTTGATCAGAATTTTTGGTCTGTCTAATAAAGCTCTTATGAATGCACCATAAAGGATGTTGACTAAAAGTATAATCGTCATCTATTTCTTATATCTACTTCCTTTGTTCGTGTGTGTGTGGGGGGGGGGGGGGGGGTTGTTAGGGAAGTAATCGGTTATTCAATTTACTTTACCCTTGATTAAGTATGCTCGTTAATATTAATATTGTCTACAGACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTTTGGATATAACTTACCCACACAATGTGATTATTTCCCGAATGAATGAAATACGTGTTATGCATATAGTTT</genome_strand>
        <mrna_strand>CAACCAGGGGCAAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTTTGGATATAACTTACCCACACAATGTGATTATTTCCCGAATGAATGAAATACGTGTTATGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393336" ref_strand="+" ref_description="SGN-E393336 [TUS-38-G11](-)">
      <seq>aaattcaacaacttttaggtgcagagcaagaagctcaacacattgtcaatgctgccaggagtgcaaaacaggctagattgaaacaggcaaaggatgaagctgagaaggagatagctgaatttcgtgcattcatggaggccgagttccagagaaagcttgaacagactagcggtgattcgggtgctaatgtcaaacgtcttgatcaagaaacgtttgcaaagatccaacacttgaaagcagaatctgaaagcatctccaacgatgttgtccagatgcttctgaggcaggtaaccacagtaaagaactaagattcatctctgaatgattaccaggatcaagtttatggtcattttctgctgattcttggttctccataattctggttttcttgctacaccagtttaatggttgttctccattttgtgttgtatatttatttatcactattggtcatcttggccctagttgaataaaataaatcatatactgatgttctatgaagacaaattttggatatagcttacccacacaatgtgattatttcccgaatgaatgaaatacgtgttagcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="32008" stop="34599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32307" g_stop="32369" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32370" i_stop="33058" i_length="689">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33059" g_stop="33159" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="164" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33160" i_stop="33888" i_length="729">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33889" g_stop="34303" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="578" r_length="414" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E393336" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32307" e_stop="32369"/>
          <exon e_start="33059" e_stop="33159"/>
          <exon e_start="33889" e_stop="34303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTGGTAATTTATTTCCCTTTTTATGCCTTCAGTTTTCTGATCTTTGAATTGAATTTCTATTAGTTTCACTAATGCAATGATCAGGAAACTCCGGCAACATACATGTACTTATTTCAAGTCATGGGTCCATAGCTAGAATTTTCTCCTTCCACGTAATAACTTTTATTTCCATTGCAGTTCAACTTTTTCCTTCCTGTGTTAGTGTGCATGGTAGATTCCTGTAAGATCACATTTTGGTTAGTATCACTTGACATACACAAATTGCAATTCTAATGTGGGCACTGAGAGTTTGTTTTCAGTCTTAACCAGCTCAGTTCCAATATAAGGGGAAGACTAGATGATTCTCATCTCTAATATGCACTGAATAAGTAAAATGTAATCTGGATGGTTCTCTAGTTCCTACCAATTCACCACTGTGCCTTACTGTTTTACGTAATCTTCCCTTTCTCAACACCGTACTTGTTATTTTGAGCCAACTGCAAGTCTGCAACATAACCAATCAATATGCATTTTGGATGTCACACGCAAAGAGTAATAACTACTGCAGCCAAAAGCTCATTACTTTGTACCTGTTCTTCCCCATGTCTTAACTAATAATATGAGCTGTGTGGCTATTGTATTTCACGGCACCGGCGTTGATATTGATCAGTTCTATAAGCAAGTTCTGAATCCTGACTTGGTTTCAAGTGCAGCAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAGGTAAATAAGAAACAAATAGTTTTTGGGGAAGAAACCAATTTTTCATGCGTCTCTAATTTGAGATTGCATAAAAAAGGGAAATCAATTGAACCCGTATTGTATAATACGTAATGTATAACTAATGAATATATGTACTAGTTATAACTGTGGTGTCTGGACCAGCACAGCTCAACTAATCCATAACAACAGCAACTGCTCTTCAAACCCAAGCTATTTGAGATTGGCTATTTCTTCATGAAATTGACTAGTTTTACAGTTGTTGTCAAACCTACCACAACCCTCCTCTTTATCTTGGCTTGGGACTGCAGACTGCCAGTGTGAGAAAGCTTACACAGGCTGAGTTGCATTCATTTATATGAACTCAAATAACAACATACCCAGTATGGTCCCACAAGTGGGGTATTGGGAGGCTGGGGTAGACGTAGAGCTTACCAGTATGTTTGTGGGGAGTTATATGAACTCGATTATTTTTATTTGAAAAATGAACATTTAAGACCAAAACTAGTGGCTGCATTCTTGATCAGAATTTTTGGTCTGTCTAATAAAGCTCTTATGAATGCACCATAAAGGATGTTGACTAAAAGTATAATCGTCATCTATTTCTTATATCTACTTCCTTTGTTCGTGTGTGTGTGGGGGGGGGGGGGGGGGTTGTTAGGGAAGTAATCGGTTATTCAATTTACTTTACCCTTGATTAAGTATGCTCGTTAATATTAATATTGTCTACAGACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTTTGGATATAACTTACCCACACAATGTGATTATTTCCCGAATGAATGAAATACGTGTTATGCATATAGTTT</genome_strand>
        <mrna_strand>AAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTTTGGATATAGCTTACCCACACAATGTGATTATTTCCCGAATGAATGAAATACGTGTTA-GCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448983" ref_strand="+" ref_description="SGN-E448983 [cSTS-5-C17]">
      <seq>gggaaaagagatatacccaccacaaacatatataaattgatcaaattccttccccaaaatcacttttcagatcaattttgaagcatctctgaggtaaaaggagattgaaaaaaactgtcttcacgcttgtgtagctaaaataaccttatatgggttgaaggttgaattttttcagctgtttgttttgggaaaatcaacagatgggtattgaggatttgggagaaattaggtgattccaataaagggtcttttgaaattttggagcttttttgaattggatttgttaagaaatggagtctaatgttatatcagatatgcgattagaaccgagcattgatacagataagctaagttacgagattttctctattctagaaagcaaattcttatttggttacgatgatcaaaagctttgggtaccaaaaaatttaccgtctccggttgaagatagcaaaaacgacggtgttttaaccacatcagcgacggaaaatattcaggcgattaagaatcaacgaggaaaaatatgtatcctcagcattgatggtggtggaatgcgaaatatattatcaggtaaagctttagcgtatttggaacaagcgttgaaggttaaatcagggaatccagaagctagaatcgccgattatttcgacgttgctgttggttcccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="37563" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37863" g_stop="38527" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E448983" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37863" e_stop="38527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAAGAGATATTCCCACCAACAAACACATATATACTGATCAAATTCCTTCCCCAAAATCACTTTTCAGATCAATTTTGAAGCATCTCTGAGGTAAAAGGAGATTG--AAAAA----CTTCACGCTTGTGTAGGTAAAATACCTTTATATGGGTTGAAGGTTGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAGCAGATGGGTATTGAGGATATGGGAGAAATTAGGTGATTCCAATAAAGAGTCTTTTGAAATTTTTGGAGTTTTTTTTGAATTGGATTTGTTAAGAAATGGAGTCAAATATTATATCAGATATGCGGTTAGAACCGAGCATTGATACAGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGC</genome_strand>
        <mrna_strand>GGGAAAAGAGATATACCCACC-ACAAACATATATAAATTGATCAAATTCCTTCCCCAAAATCACTTTTCAGATCAATTTTGAAGCATCTCTGAGGTAAAAGGAGATTGAAAAAAACTGTCTTCACGCTTGTGTAGCTAAAATAACCTTATATGGGTTGAAGGTTGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAACAGATGGGTATTGAGGATTTGGGAGAAATTAGGTGATTCCAATAAAGGGTCTTTTGAAA-TTTTGGAG-CTTTTTTGAATTGGATTTGTTAAGAAATGGAGTCTAATGTTATATCAGATATGCGATTAGAACCGAGCATTGATACAGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATAGCAAAAACGACGGTGTTTTAACCACATCAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCAGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409956" ref_strand="+" ref_description="SGN-E409956 [PPI-15-H21]">
      <seq>gaaaagagatatacccaccacaaacatatataaattgatcaaattccttccccaaaatcacttttcagatcaattttgaagcatctctgaggtaaaaggagattgaaaaaaactgtcttcacgcttgtgtagctaaaataaccttatatgggttgaaggttgaattttttcagctgtttgttttgggaaaatcaacagatgggtattgaggatttgggagaaattaggtgattccaataaagggtcttttgaaattttggagcttttttgaattggatttgttaagaaatggagtctaatgttatatcagatatgcgattagaaccgagcattgatacagataagctaagttacgagattttctctattctagaaagcaaattcttatttggttacgatgatcaaaagctttgggtaccaaaaaatttaccgtctccggttgaagatagcaaaaacgacggtgttttaaccacatcagcgacggaaaatattcaggcgattaagaatcaacgaggaaaaatatgtatcctcagcattgatggtggtggaatgcgaaatatattatcaggtaaagctttagcgtatttggaacaagcgttgaaggttaaatcagggaatccagaagctagaatcgccaattatttcgacgttgctgttggttccggcgtcggaggattttcacggcgatgttattttcacgaggatcaaaaccgtctgttttccagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="37565" stop="38894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37865" g_stop="38594" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E409956" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37865" e_stop="38594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAGATATTCCCACCAACAAACACATATATACTGATCAAATTCCTTCCCCAAAATCACTTTTCAGATCAATTTTGAAGCATCTCTGAGGTAAAAGGAGATTG--AAAAA----CTTCACGCTTGTGTAGGTAAAATACCTTTATATGGGTTGAAGGTTGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAGCAGATGGGTATTGAGGATATGGGAGAAATTAGGTGATTCCAATAAAGAGTCTTTTGAAATTTTTGGAGTTTTTTTTGAATTGGATTTGTTAAGAAATGGAGTCAAATATTATATCAGATATGCGGTTAGAACCGAGCATTGATACAGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTG</genome_strand>
        <mrna_strand>GAAAAGAGATATACCCACCA-CAAACATATATAAATTGATCAAATTCCTTCCCCAAAATCACTTTTCAGATCAATTTTGAAGCATCTCTGAGGTAAAAGGAGATTGAAAAAAACTGTCTTCACGCTTGTGTAGCTAAAATAACCTTATATGGGTTGAAGGTTGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAACAGATGGGTATTGAGGATTTGGGAGAAATTAGGTGATTCCAATAAAGGGTCTTTTGAAA-TTTTGGAG-CTTTTTTGAATTGGATTTGTTAAGAAATGGAGTCTAATGTTATATCAGATATGCGATTAGAACCGAGCATTGATACAGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATAGCAAAAACGACGGTGTTTTAACCACATCAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCAGGGAATCCAGAAGCTAGAATCGCCAATTATTTCGACGTTGCTGTTGGTTCCGGCGTCGGAGG-ATTTTCACGGCGATGTTATTTTC-ACG-AGGATCAAAACCGT-CTGTTTTCC-AGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409828" ref_strand="+" ref_description="SGN-E409828 [PPI-15-M19]">
      <seq>gaaaagagatatacccaccacaaacatatataaattgatcaaattccttccccaaaatcacttttcagatcaattttgaagcatctctgaggtaaaaggagattgaaaaaaactgtcttcacgcttgtgtagctaaaataaccttatatgggttgaaggttgaattttttcagctgtttgttttgggaaaatcaacagatgggtattgaggatttgggagaaattaggtgattccaataaagggtcttttgaaattttggagcttttttgaattggatttgttaagaaatggagtctaatgttatatcagatatgcgattagaaccgagcattgatacagataagctaagttacgagattttctctattctagaaagcaaattcttatttggttacgatgatcaaaagctttgggtaccaaaaaatttaccgtctccggttgaagatagcaaaaacgacggtgttttaaccacatcagcgacggaaaatattcaggcgattaagaatcaacgaggaaaaatatgtatcctcagcattgatggtggtggaatgcgaaatatattatcaggtaaagctttagcgtatttggaacnagcgttgaaggttaaatcagggaatccagaagctagaatcgcgattatttcgacgttgctgttggttccggcgtcggaggattttcacggcgatgtatttttcacgaaagatcaaaaccgtctgttttccagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="37565" stop="38893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37865" g_stop="38588" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E409828" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37865" e_stop="38588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAGATATTCCCACCAACAAACACATATATACTGATCAAATTCCTTCCCCAAAATCACTTTTCAGATCAATTTTGAAGCATCTCTGAGGTAAAAGGAGATTG--AAAAA----CTTCACGCTTGTGTAGGTAAAATACCTTTATATGGGTTGAAGGTTGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAGCAGATGGGTATTGAGGATATGGGAGAAATTAGGTGATTCCAATAAAGAGTCTTTTGAAATTTTTGGAGTTTTTTTTGAATTGGATTTGTTAAGAAATGGAGTCAAATATTATATCAGATATGCGGTTAGAACCGAGCATTGATACAGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCC</genome_strand>
        <mrna_strand>GAAAAGAGATATACCCACCA-CAAACATATATAAATTGATCAAATTCCTTCCCCAAAATCACTTTTCAGATCAATTTTGAAGCATCTCTGAGGTAAAAGGAGATTGAAAAAAACTGTCTTCACGCTTGTGTAGCTAAAATAACCTTATATGGGTTGAAGGTTGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAACAGATGGGTATTGAGGATTTGGGAGAAATTAGGTGATTCCAATAAAGGGTCTTTTGAAA-TTTTGGAG-CTTTTTTGAATTGGATTTGTTAAGAAATGGAGTCTAATGTTATATCAGATATGCGATTAGAACCGAGCATTGATACAGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATAGCAAAAACGACGGTGTTTTAACCACATCAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACNAGCGTTGAAGGTTAAATCAGGGAATCCAGAAGCTAGAATCG-CGATTATTTCGACGTTGCTGTTGGTTCCGGCGTCGGAGG-ATTTTCACGGCGATG-TATTTTTCACGAAAGATCAAAACCGT-CTGTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306215" ref_strand="+" ref_description="SGN-E306215 [cLEY-13-L1]">
      <seq>gagatattcccaccaacaaacacatatatactgatcaaattccttccccaaaatcacttttcagatcaattttgaagcatctctgaggtaaaaggagattgaaaaacttcacgcttgtgtaggtaaaatacctttatatgggttgaaggttgaattttttcagctgtttgttttgggaaaatcagcagatgggtattgaggatatgggagaaattaggtgattccaataaagagtcttttgaaatttttggagttttttttgaattggatttgttaagaaatggagtcaaatattatatcagatatgcggttagaaccgagcattgatacagataagctaagttacgagattttctctattctagaaagcaaattcttatttggttacgatgatcaaaagctttgggtaccaaaaaatttaccgtctccggttgaagatggcaaaaacgacggcgttttaacctccacagcgacggaaaatattcaggcgattaagaatcaacgaggaaaaatatgtatcctcagcattgatggtggtggaatgcgaaatatattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="37570" stop="38727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37870" g_stop="38427" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E306215" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37870" e_stop="38427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATATTCCCACCAACAAACACATATATACTGATCAAATTCCTTCCCCAAAATCACTTTTCAGATCAATTTTGAAGCATCTCTGAGGTAAAAGGAGATTGAAAAACTTCACGCTTGTGTAGGTAAAATACCTTTATATGGGTTGAAGGTTGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAGCAGATGGGTATTGAGGATATGGGAGAAATTAGGTGATTCCAATAAAGAGTCTTTTGAAATTTTTGGAGTTTTTTTTGAATTGGATTTGTTAAGAAATGGAGTCAAATATTATATCAGATATGCGGTTAGAACCGAGCATTGATACAGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATC</genome_strand>
        <mrna_strand>GAGATATTCCCACCAACAAACACATATATACTGATCAAATTCCTTCCCCAAAATCACTTTTCAGATCAATTTTGAAGCATCTCTGAGGTAAAAGGAGATTGAAAAACTTCACGCTTGTGTAGGTAAAATACCTTTATATGGGTTGAAGGTTGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAGCAGATGGGTATTGAGGATATGGGAGAAATTAGGTGATTCCAATAAAGAGTCTTTTGAAATTTTTGGAGTTTTTTTTGAATTGGATTTGTTAAGAAATGGAGTCAAATATTATATCAGATATGCGGTTAGAACCGAGCATTGATACAGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300906" ref_strand="+" ref_description="SGN-E300906 [cLEW-8-L18]">
      <seq>ccaccaacaaacacatatatactgatcaaattccttccccaaaatcacttttcagatcaattttgaagcatctctgaggtaaaaggagattgaaaaacttcacgcttgtgtaggtaaaatacctttatatgggttgaaggttgaattttttcagctgtttgttttgggaaaatcagcagatgggtattgaggatatgggagaaattaggtgattccaataaagagtcttttgaaatttttggagttttttttgaattggatttgttaagaaatggagtcaaatattatatcagatatgcggttagaaccgagcattgatacagataagctaagttacgagattttctctattctagaaagcaaattcttatttggttacgatgatcaaaagctttgggtaccaaaaaatttaccgtctccggttgaagatggcaaaaacgacggcgttttaacctccacagcgacggaaaatattcaggcgattaagaatcaacgaggaaaaatatgtatcctcagcattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="37579" stop="38701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37879" g_stop="38401" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E300906" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37879" e_stop="38401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCAACAAACACATATATACTGATCAAATTCCTTCCCCAAAATCACTTTTCAGATCAATTTTGAAGCATCTCTGAGGTAAAAGGAGATTGAAAAACTTCACGCTTGTGTAGGTAAAATACCTTTATATGGGTTGAAGGTTGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAGCAGATGGGTATTGAGGATATGGGAGAAATTAGGTGATTCCAATAAAGAGTCTTTTGAAATTTTTGGAGTTTTTTTTGAATTGGATTTGTTAAGAAATGGAGTCAAATATTATATCAGATATGCGGTTAGAACCGAGCATTGATACAGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGAT</genome_strand>
        <mrna_strand>CCACCAACAAACACATATATACTGATCAAATTCCTTCCCCAAAATCACTTTTCAGATCAATTTTGAAGCATCTCTGAGGTAAAAGGAGATTGAAAAACTTCACGCTTGTGTAGGTAAAATACCTTTATATGGGTTGAAGGTTGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAGCAGATGGGTATTGAGGATATGGGAGAAATTAGGTGATTCCAATAAAGAGTCTTTTGAAATTTTTGGAGTTTTTTTTGAATTGGATTTGTTAAGAAATGGAGTCAAATATTATATCAGATATGCGGTTAGAACCGAGCATTGATACAGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319969" ref_strand="+" ref_description="SGN-E319969 [cTOB-31-O13]">
      <seq>caccaacaaacacatatatactgatcaaattccttccccaaaatcacttttcagatcaattttgaagcatctctgaggtaaaaggagattgaaaaacttcacgcttgtgtaggtaaaatacctttatatgggttgaaggttgaattttttcagctgtttgttttgggaaaatcagcagatgggtattgaggatatgggagaaattaggtgattccaataaagagtcttttgaaatttttggagttttttttgaattggatttgttaagaaatggagtccaatattatatcagatatgcggatagaaccgagcattgatacagataagctaagttacgagattttctctattctagaaagcaaattcttatttggttacgatgatcaaaagctttgggtaccaaaagatttaccgtctccggttgaagatggcaataacgacggcgtgttaacctccacagcgactgaaaatattcaggcgattaagaatcaacgaggaagaatatgtatcctcagcattgatggtggcggaatgcgaaatatattatcaagtaaagctttatcgtatctggaacaagcgttgaaggttaaatcggggaatccagaagctagaatcgccgattatttcgacgttgctgttggctccggcgttggaggaattctcacggcgatgttattactcacgaaggatcaaaaccgtcctgttgntccagctgaagatacatggaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="37580" stop="38911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37880" g_stop="38611" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E319969" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37880" e_stop="38611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAACAAACACATATATACTGATCAAATTCCTTCCCCAAAATCACTTTTCAGATCAATTTTGAAGCATCTCTGAGGTAAAAGGAGATTGAAAAACTTCACGCTTGTGTAGGTAAAATACCTTTATATGGGTTGAAGGTTGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAGCAGATGGGTATTGAGGATATGGGAGAAATTAGGTGATTCCAATAAAGAGTCTTTTGAAATTTTTGGAGTTTTTTTTGAATTGGATTTGTTAAGAAATGGAGTCAAATATTATATCAGATATGCGGTTAGAACCGAGCATTGATACAGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAACTT</genome_strand>
        <mrna_strand>CACCAACAAACACATATATACTGATCAAATTCCTTCCCCAAAATCACTTTTCAGATCAATTTTGAAGCATCTCTGAGGTAAAAGGAGATTGAAAAACTTCACGCTTGTGTAGGTAAAATACCTTTATATGGGTTGAAGGTTGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAGCAGATGGGTATTGAGGATATGGGAGAAATTAGGTGATTCCAATAAAGAGTCTTTTGAAATTTTTGGAGTTTTTTTTGAATTGGATTTGTTAAGAAATGGAGTCCAATATTATATCAGATATGCGGATAGAACCGAGCATTGATACAGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAGATTTACCGTCTCCGGTTGAAGATGGCAATAACGACGGCGTGTTAACCTCCACAGCGACTGAAAATATTCAGGCGATTAAGAATCAACGAGGAAGAATATGTATCCTCAGCATTGATGGTGGCGGAATGCGAAATATATTATCAAGTAAAGCTTTATCGTATCTGGAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGCTCCGGCGTTGGAGGAATTCTCACGGCGATGTTATTACTCACGAAGGATCAAAACCGTCCTGTTGNTCCAGCTGAAGATACATGGAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456376" ref_strand="+" ref_description="SGN-E456376 [cSTS-29-I4]">
      <seq>caaacatatataaattgatcaaattccttccccaaaatcacttttcagatcaattttgaagcatctctgaggtaaaaggagattgaaaaaaactgtcttcacgcttgtgtagctaaaataaccttatatgggttgaaggttgaattttttcagctgtttgttttgggaaaatcaacagatgggtattgaggatttgggagaaattaggtgattccaataaagggtcttttgaaattttggagcttttttgaattggatttgttaagaaatggagtctaatgttatatcagatatgcgattagaaccgagcattgatacagataagctaagttacgagattttctctattctagaaagcaaattcttatttggttacgatgatcaaaagctttgggtaccaaaaaatttaccgtctccggttgaagatagcaaaaacgacggtgttttaaccacatcagcgacggaaaatattcaggcgattaagaatcaacgaggaaaaatatgtatcctcagcattgatggtggtggaatgcgaaatatattatcangtaaagctttagcgtatttggaacaagcgttgaaggttaaatcanggaatccagaagctagaatcgccgattatttcgacgttgctgttggttccggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="37586" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37886" g_stop="38527" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E456376" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37886" e_stop="38527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACATATATACTGATCAAATTCCTTCCCCAAAATCACTTTTCAGATCAATTTTGAAGCATCTCTGAGGTAAAAGGAGATTG-A-AAAACT-TC---ACGCTTGTGTAGGTAAAATACCTTTATATGGGTTGAAGGTTGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAGCAGATGGGTATTGAGGATATGGGAGAAATTAGGTGATTCCAATAAAGAGTCTTTTGAAATTTTTGGAGTTTTTTTTGAATTGGATTTGTTAAGAAATGGAGTCAAATATTATATCAGATATGCGGTTAGAACCGAGCATTGATACAGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGC</genome_strand>
        <mrna_strand>CAAACATATATAAATTGATCAAATTCCTTCCCCAAAATCACTTTTCAGATCAATTTTGAAGCATCTCTGAGGTAAAAGGAGATTGAAAAAAACTGTCTTCACGCTTGTGTAGCTAAAATAACCTTATATGGGTTGAAGGTTGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAACAGATGGGTATTGAGGATTTGGGAGAAATTAGGTGATTCCAATAAAGGGTCTTTTGAAA-TTTTGGAG-CTTTTTTGAATTGGATTTGTTAAGAAATGGAGTCTAATGTTATATCAGATATGCGATTAGAACCGAGCATTGATACAGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATAGCAAAAACGACGGTGTTTTAACCACATCAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCANGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCANGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543750" ref_strand="+" ref_description="SGN-E543750 [TUS-65-L16]">
      <seq>ccaaaatcacttttcagatcaattttgaagcatctctgaggtaaaaggagattgaaaaacttcacgcttgtgtaggtaaaatacctttatatgggttgaaggttgaattttttcagctgtttgttttgggaaaatcagcagatgggtattgaggatatgggagaaattaggtgattccaataaagagtcttttgaaatttttggagttttttttgaattggatttgttaagaaatggagtcaaatattatatcagatatgcggttagaaccgagcattgatacagataagctaagttacgagattttctctattctagaaagcaaattcttatttggttacgatgatcaaaagctttgggtaccaaaaaatttaccgtctccggttgaagatggcaaaaacgacggcgttttaacctccacagcgacggaaaatattcaggcgattaagaatcaacgaggaaaaatatgtatcctcagcattgatggtggtggaatgcgaaatatattatcaggtaaagctttagcgtatttggaacaagcgttgaaggttaaatcggggaatccagaagctagaatcgccgattatttcgacgttgctgttggttccggcgttggaggaattttcacggcgatgttattttcaacgaaagatcaaaaccgtcctgttttccaagctgaagatacatggaaacttctagagggacaaggtagaagaatttatccttcaaagggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="37617" stop="38953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37917" g_stop="38653" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E543750" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37917" e_stop="38653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATCACTTTTCAGATCAATTTTGAAGCATCTCTGAGGTAAAAGGAGATTGAAAAACTTCACGCTTGTGTAGGTAAAATACCTTTATATGGGTTGAAGGTTGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAGCAGATGGGTATTGAGGATATGGGAGAAATTAGGTGATTCCAATAAAGAGTCTTTTGAAATTTTTGGAGTTTTTTTTGAATTGGATTTGTTAAGAAATGGAGTCAAATATTATATCAGATATGCGGTTAGAACCGAGCATTGATACAGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAACTTCTAGAGGAACAAGGTAGAAGAATTTATCCTTCAAAAGGGTCG</genome_strand>
        <mrna_strand>CCAAAATCACTTTTCAGATCAATTTTGAAGCATCTCTGAGGTAAAAGGAGATTGAAAAACTTCACGCTTGTGTAGGTAAAATACCTTTATATGGGTTGAAGGTTGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAGCAGATGGGTATTGAGGATATGGGAGAAATTAGGTGATTCCAATAAAGAGTCTTTTGAAATTTTTGGAGTTTTTTTTGAATTGGATTTGTTAAGAAATGGAGTCAAATATTATATCAGATATGCGGTTAGAACCGAGCATTGATACAGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAAGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAACTTCTAGAGGGACAAGGTAGAAGAATTTATCCTTC-AAAGGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304492" ref_strand="+" ref_description="SGN-E304492 [cLEX-12-P18]">
      <seq>caaaatcacttttcagatcaattttgaagcatctctgaggtaaaaggagattgaaaaacttcacgcttgtgtaggtaaaatacctttatatgggttgaaggttgaattttttcagctgtttgttttgggaaaatcagcagatgggtattgaggatatgggagaaattaggtgattccaataaagagtcttttgaaatttttggagttttttttgaattggatttgttaagaaatggagtcaaatattatatcagatatgcggttagaaccgagcattgatacagataagctaagttacgagattttctctattctagaaagcaaattcttatttggttacgatgatcaaaagctttgggtaccaaaaaatttaccgtctccggttgaagatggcaaaaacgacggcgttttaacctccacagcgacggaaaatattcacgcgattaagaatcaacgaggaaaaatatgtatcctcagcattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="37618" stop="38702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37918" g_stop="38402" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E304492" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37918" e_stop="38402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCACTTTTCAGATCAATTTTGAAGCATCTCTGAGGTAAAAGGAGATTGAAAAACTTCACGCTTGTGTAGGTAAAATACCTTTATATGGGTTGAAGGTTGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAGCAGATGGGTATTGAGGATATGGGAGAAATTAGGTGATTCCAATAAAGAGTCTTTTGAAATTTTTGGAGTTTTTTTTGAATTGGATTTGTTAAGAAATGGAGTCAAATATTATATCAGATATGCGGTTAGAACCGAGCATTGATACAGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATG</genome_strand>
        <mrna_strand>CAAAATCACTTTTCAGATCAATTTTGAAGCATCTCTGAGGTAAAAGGAGATTGAAAAACTTCACGCTTGTGTAGGTAAAATACCTTTATATGGGTTGAAGGTTGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAGCAGATGGGTATTGAGGATATGGGAGAAATTAGGTGATTCCAATAAAGAGTCTTTTGAAATTTTTGGAGTTTTTTTTGAATTGGATTTGTTAAGAAATGGAGTCAAATATTATATCAGATATGCGGTTAGAACCGAGCATTGATACAGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCACGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249872" ref_strand="+" ref_description="SGN-E249872 [cLEF-57-H19]">
      <seq>aaaatacctttatatgggttgaaggttgaattttttcagctgtttgttttgggaaaatcagcagatgggtattgaggatatgggagaaattaggtgattccaataaagagtcttttgaaatttttggagttttttttgaattggatttgttaagaaatggagtcaaatattatatcagatatgcggttagaaccgagcattgatacagataagctaagttacgagattttctctattctagaaagcaaattcttatttggttacgatgatcaaaagctttgggtaccaaaaaatttaccgtctccggttgaagatggcaaaaacgacggcgttttaacctccacagcgacggaaaatattcaggcgattaagaatcaacgaggaaaaatatgtatcctcagcattgatggtggtggaatgcgaaatatattatcaggtaaagctttagcgtatttggaacaagcgttgaaggttaaatcggggaatccagaagctagaatcgccgattatttcgacgttgctgttggttccggcgttggaggaattttcacggcgatgttattttcaacgaaggatcaaaaccgtcctgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="37694" stop="38885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37994" g_stop="38585" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E249872" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37994" e_stop="38585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACCTTTATATGGGTTGAAGGTTGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAGCAGATGGGTATTGAGGATATGGGAGAAATTAGGTGATTCCAATAAAGAGTCTTTTGAAATTTTTGGAGTTTTTTTTGAATTGGATTTGTTAAGAAATGGAGTCAAATATTATATCAGATATGCGGTTAGAACCGAGCATTGATACAGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTT</genome_strand>
        <mrna_strand>AAAATACCTTTATATGGGTTGAAGGTTGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAGCAGATGGGTATTGAGGATATGGGAGAAATTAGGTGATTCCAATAAAGAGTCTTTTGAAATTTTTGGAGTTTTTTTTGAATTGGATTTGTTAAGAAATGGAGTCAAATATTATATCAGATATGCGGTTAGAACCGAGCATTGATACAGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254027" ref_strand="+" ref_description="SGN-E254027 [cLEG-34-E6]">
      <seq>gataagctaagttacgagattttctctattctagaaagcaaattcttatttggttacgatgatcaaaagctttgggtaccaaaaaatttaccgtctccggttgaagatggcaaaaacgacggcgttttaacctccacagcgacggaaaatattcaggcgattaagaatcaacgaggaaaaatatgtatcctcagcattgatggtggtggaatgcgaaatatattatcaggtaaagctttagcgtatttggaacaagcgttgaaggttaaatcggggaatccagaagctagaatcgccgattatttcgacgttgctgttggttccggcgttggaggaattttcacggcgatgttattttcaacgaaggatcaaaaccgtcctgttttccaagctgaagatacatggaaacttctagaggaacaaggtagaagaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="37901" stop="38937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38201" g_stop="38637" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E254027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38201" e_stop="38637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAACTTCTAGAGGAACAAGGTAGAAGAATTTA</genome_strand>
        <mrna_strand>GATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAACTTCTAGAGGAACAAGGTAGAAGAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484241" ref_strand="+" ref_description="SGN-E484241 [cSTE-12-J11]">
      <seq>agaaagcaaattcttatttggttacgatgatcaaaagctttgggtacctaaaaatttaccgtctccggttgaagataacaaaaacgacggcgttttaaccacatcagcgacggagaatattcaggcgattaagaatcaacgaggaaaaatatgtatcctcagcattgatggtggtggaatgcgaaatatattatcaggtaaagctttagcgtatttggaacaagcgttaaaggttaaatcggggaatccagaagctagaatcgccgattatttcgacgttgctgttggttccggcgtcggaggaattttcacggcgatgttattttcaacgaaggatcaaaaccgtcctgttttccaagctgaagatacatggaagcttttagaggaacaaggtagaagaatttatccttcaaaagggtcaagttctgccggaaatggttttctccggcgagttttccgaggtggcgcaacccgttcagatacttccggtttagagaaagtgatgaaagaagcatttatggataaaaaaaccggtcgaagccttacgttaaaggatactcttaaaccggttttaatcccctgttatgacctttcaagtacggcgccgtttttgttctcccgagctgatgcattcgaatcggaaagctttgatttccggttatgggaagtttgccgagctacatcagctgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="37933" stop="39224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38233" g_stop="38924" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E484241" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38233" e_stop="38924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAACTTCTAGAGGAACAAGGTAGAAGAATTTATCCTTCAAAAGGGTCGACTTCTGCCGGAAATGGTTTTCTCCGGCGAGTTCTCCGAGGTGGCGCAACCCGTTCTGATGCTTCCGGTTTAGAGAAAGTGATGAAAGAAGCATTTATGGATAAAAAAACCGGTCGAAGCCTTACGTTAAAGGATACTCTTAAACCGGTTTTAATCCCCTGTTATGACCTTTCCAGTACTGCACCGTTTTTGTTCTCCCGAGCTGATGCTTTCGAATCGGAAAGCTTTGATTTCCGGTTATGGGAAGTTTGCCGGGCTACATCAGCTGAAC</genome_strand>
        <mrna_strand>AGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCTAAAAATTTACCGTCTCCGGTTGAAGATAACAAAAACGACGGCGTTTTAACCACATCAGCGACGGAGAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTAAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTCGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAGCTTTTAGAGGAACAAGGTAGAAGAATTTATCCTTCAAAAGGGTCAAGTTCTGCCGGAAATGGTTTTCTCCGGCGAGTTTTCCGAGGTGGCGCAACCCGTTCAGATACTTCCGGTTTAGAGAAAGTGATGAAAGAAGCATTTATGGATAAAAAAACCGGTCGAAGCCTTACGTTAAAGGATACTCTTAAACCGGTTTTAATCCCCTGTTATGACCTTTCAAGTACGGCGCCGTTTTTGTTCTCCCGAGCTGATGCATTCGAATCGGAAAGCTTTGATTTCCGGTTATGGGAAGTTTGCCGAGCTACATCAGCTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484756" ref_strand="+" ref_description="SGN-E484756 [cSTE-14-L24]">
      <seq>agaaagcaaattcttatttggttacgatgatcaaaagctttgggtacctaaaaatttaccgtctccggttgaagataacaaaaacgacggcgttttaaccacatcagcgacggagaatattcaggcgattaagaatcaacgaggaaaaatatgtatcctcagcattgatggtggtggaatgcgaaatatattatcaggtaaagctttagcgtatttggaacaagcgttaaaggttaaatcggggaatccagaagctagaatcgccgattatttcgacgttgctgttggttccggcgtcggaggaattttcacggcgatgttattttcaacgaaggatcaaaaccgtcctgttttccaagctgaagatacatggaagcttttagaggaacaaggtagaagaatttatccttcaaaagggtcaagttctgccggaaatggttttctccggcgagttttccgaggtggcgcaacccgttcagatacttccggtttagagaaagtgatgaaagaagcatttatggataaaaaaaccggtcgaagccttacgttaaaggatactcttaaaccggttttaatcccctgttatgacctttcaagtacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="37933" stop="39132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38233" g_stop="38833" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E484756" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38233" e_stop="38833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAACTTCTAGAGGAACAAGGTAGAAGAATTTATCCTTCAAAAGGGTCGACTTCTGCCGGAAATGGTTTTCTCCGGCGAGTTCTCCGAGGTGGCGCAACCCGTTCTGATGCTTCCGGTTTAGAGAAAGTGATGAAAGAAGCATTTATGGATAAAAAAACCGGTCGAAGCCTTACGTTAAAGGATACTCTTAAACCGGTTTTAATCCCCTGTTATGACCTTTCCAGTACT</genome_strand>
        <mrna_strand>AGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCTAAAAATTTACCGTCTCCGGTTGAAGATAACAAAAACGACGGCGTTTTAACCACATCAGCGACGGAGAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTAAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTCGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAGCTTTTAGAGGAACAAGGTAGAAGAATTTATCCTTCAAAAGGGTCAAGTTCTGCCGGAAATGGTTTTCTCCGGCGAGTTTTCCGAGGTGGCGCAACCCGTTCAGATACTTCCGGTTTAGAGAAAGTGATGAAAGAAGCATTTATGGATAAAAAAACCGGTCGAAGCCTTACGTTAAAGGATACTCTTAAACCGGTTTTAATCCCCTGTTATGACCTTTCAAGTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258648" ref_strand="+" ref_description="SGN-E258648 [cLEG-50-E24]">
      <seq>aaaaaatttaccgtctccggttgaagatggcaaaaacgacggcgttttaacctccacagcgacggaaaatattcaggcgattaagaatcaacgaggaaaaatatgtatcctcagcattgatggtggtggaatgcgaaatatattatcaggtaaagctttagcgtatttggaacaagcgttgaaggttaaatcggggaatccagaagctagaatcgccgattatttcgacgttgctgttggttccggcgttggaggaattttcacggcgatgttattttcaacgaaggatcaaaaccgtcctgttttccaagctgaagatacatggaaacttctagaggaacaaggtagaagaatttatccttcaaaagggtcgacttctgccggaaatggttttctccggcgagttctccgaggtggcgcaacccgttctgatgcttccggtttagagaaagtgatgaaagaagcatttatggataaaaaaaccggtcgaagccttacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="37981" stop="39081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38281" g_stop="38781" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E258648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38281" e_stop="38781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAACTTCTAGAGGAACAAGGTAGAAGAATTTATCCTTCAAAAGGGTCGACTTCTGCCGGAAATGGTTTTCTCCGGCGAGTTCTCCGAGGTGGCGCAACCCGTTCTGATGCTTCCGGTTTAGAGAAAGTGATGAAAGAAGCATTTATGGATAAAAAAACCGGTCGAAGCCTTACGTT</genome_strand>
        <mrna_strand>AAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAACTTCTAGAGGAACAAGGTAGAAGAATTTATCCTTCAAAAGGGTCGACTTCTGCCGGAAATGGTTTTCTCCGGCGAGTTCTCCGAGGTGGCGCAACCCGTTCTGATGCTTCCGGTTTAGAGAAAGTGATGAAAGAAGCATTTATGGATAAAAAAACCGGTCGAAGCCTTACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307907" ref_strand="+" ref_description="SGN-E307907 [cLEY-20-F3]">
      <seq>gcgattaataatcaacgaggaaaaatatgtatcctcagcattgatggtggtggaatgcgaaatatattatcaggtaaagctttagcgtatttggaacaagcgttgaaggttaaatcggggaatccagaagctagaatcgccgattatttcgacgttgctgttggttccggcgttggaggaattttcacggcgatgttattttcaacgaaggatcaaaaccgtcctgttttccaagctgaagatacatggaaacttctagaggaacaaggtagaagaatttatccttcaaaagggtcgacttctgccggaaatggttttctccggcgagttctccgaggtggcgcaacccgttctgatgcttccggtttagagaaagtgatgaaagaagcatttatggataaaaaaaccggtcgaagccttacgttaaaggatactcttaaaccggttttaatcccctgttatgacctttccagtactgcaccgtttttgttctcccgagctgatgctttcgaatcggaaagctttgatttccggttatgggaagtttgccgggctacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="38057" stop="39216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38357" g_stop="38916" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E307907" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38357" e_stop="38916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAACTTCTAGAGGAACAAGGTAGAAGAATTTATCCTTCAAAAGGGTCGACTTCTGCCGGAAATGGTTTTCTCCGGCGAGTTCTCCGAGGTGGCGCAACCCGTTCTGATGCTTCCGGTTTAGAGAAAGTGATGAAAGAAGCATTTATGGATAAAAAAACCGGTCGAAGCCTTACGTTAAAGGATACTCTTAAACCGGTTTTAATCCCCTGTTATGACCTTTCCAGTACTGCACCGTTTTTGTTCTCCCGAGCTGATGCTTTCGAATCGGAAAGCTTTGATTTCCGGTTATGGGAAGTTTGCCGGGCTACATC</genome_strand>
        <mrna_strand>GCGATTAATAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAACTTCTAGAGGAACAAGGTAGAAGAATTTATCCTTCAAAAGGGTCGACTTCTGCCGGAAATGGTTTTCTCCGGCGAGTTCTCCGAGGTGGCGCAACCCGTTCTGATGCTTCCGGTTTAGAGAAAGTGATGAAAGAAGCATTTATGGATAAAAAAACCGGTCGAAGCCTTACGTTAAAGGATACTCTTAAACCGGTTTTAATCCCCTGTTATGACCTTTCCAGTACTGCACCGTTTTTGTTCTCCCGAGCTGATGCTTTCGAATCGGAAAGCTTTGATTTCCGGTTATGGGAAGTTTGCCGGGCTACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423746" ref_strand="+" ref_description="SGN-E423746 [STM-42-D3]">
      <seq>aagcgttgaaggttaaatcggagaatccagaagctagaatcgccgattatttcgacgttgctgttggttccggcgtcggaggaattttcacggcgatgttattttcaacgaaggatcaaaaccgtcctgttttccaagctgaagatacatggaagcttctagaggaacaaggtagaagaatttatccttcaaaagggtcaagttctgccggaaatggttttctccggcgagttttccgaggcggcgtaacccgttcagatacttccggtttagagaaagtgatgaaagaagcatttatggataaaaaaaaccggtcgaagccttacgttaaaggatactcttaaaccggttttaatcccctgttatgacctttcaagtacggcgccgtttttgttctcccgagctgatgctttcgaatcggaaagctttgatttccggttatgggaaagttgccgagctacatcagctgaaacgggactcttcgaaccggttagtatgaaatccgtcgatggaaaacccgggtgcgtggcggttgacggcggtttagctatgagcaacccgacggccgccgcgattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="38154" stop="39330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38454" g_stop="39031" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E423746" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38454" e_stop="39031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAACTTCTAGAGGAACAAGGTAGAAGAATTTATCCTTCAAAAGGGTCGACTTCTGCCGGAAATGGTTTTCTCCGGCGAGTTCTCCGAGGTGGCGCAACCCGTTCTGATGCTTCCGGTTTAGAGAAAGTGATGAAAGAAGCATTTATGGAT-AAAAAAACCGGTCGAAGCCTTACGTTAAAGGATACTCTTAAACCGGTTTTAATCCCCTGTTATGACCTTTCCAGTACTGCACCGTTTTTGTTCTCCCGAGCTGATGCTTTCGAATCGGAAAGCTTTGATTTCCGGTTATGGGAAGTTTGCCGGGCTACATCAGCTGAACCGGGACTCTTCGAACCGGTTTGTATGAAATCCGTCGATGGAAAAACCGGATGCGTGGCGGTTGACGGCGGTTTAGCAATGAGCAACCCGACGGCCGCCGCGATTACC</genome_strand>
        <mrna_strand>AAGCGTTGAAGGTTAAATCGGAGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTCGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAGCTTCTAGAGGAACAAGGTAGAAGAATTTATCCTTCAAAAGGGTCAAGTTCTGCCGGAAATGGTTTTCTCCGGCGAGTTTTCCGAGGCGGCGTAACCCGTTCAGATACTTCCGGTTTAGAGAAAGTGATGAAAGAAGCATTTATGGATAAAAAAAACCGGTCGAAGCCTTACGTTAAAGGATACTCTTAAACCGGTTTTAATCCCCTGTTATGACCTTTCAAGTACGGCGCCGTTTTTGTTCTCCCGAGCTGATGCTTTCGAATCGGAAAGCTTTGATTTCCGGTTATGGGAAAGTTGCCGAGCTACATCAGCTGAAACGGGACTCTTCGAACCGGTTAGTATGAAATCCGTCGATGGAAAACCCGGGTGCGTGGCGGTTGACGGCGGTTTAGCTATGAGCAACCCGACGGCCGCCGCGATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575783" ref_strand="+" ref_description="SGN-E575783 [35461]">
      <seq>aatccagaagctagaatcgccgattatttcgacgttgctgttggttccggcgtcggaggaattttcacggcgatgttattttcaacgaaggatcaaaaccgtcctgttttccaagctgaagatacatggaagcttttagaggaacaaggtagaagaatttatccttcaaaagggtcaagttctgccggaaatggttttctccggcgagttttccgaggtggcgcaacccgttcagatacttccggtttagagaaagtgatgaaagaagcatttatggataaaaaaaccggtcgaagccttacgttaaaggatactcttaaaccggttttaatcccctgttatgacctttcaagtacggcgccgtttttgttctcccgagctgatgctttcgaatcggaaagctttgatttccggttatgggaagtttgccgagctacatcagctgaaccgggactcttcgaaccggtttgtatgaaatccgtcgatggaaaaaccgggtgcgtggcggttgacggcggtttagctatgagcaacccgacggccgccgcgattactcacgttcttcataacaaacaggaatttccttttgttagaggtgttgaggacattttggtcctttcacttggaacagggcagcttctagaaggaagcttccaatatgaacatgtcaaaaagtggaaggctaaggactgggctaagccaatggcccgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="38177" stop="39488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38477" g_stop="39188" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E575783" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38477" e_stop="39188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAACTTCTAGAGGAACAAGGTAGAAGAATTTATCCTTCAAAAGGGTCGACTTCTGCCGGAAATGGTTTTCTCCGGCGAGTTCTCCGAGGTGGCGCAACCCGTTCTGATGCTTCCGGTTTAGAGAAAGTGATGAAAGAAGCATTTATGGATAAAAAAACCGGTCGAAGCCTTACGTTAAAGGATACTCTTAAACCGGTTTTAATCCCCTGTTATGACCTTTCCAGTACTGCACCGTTTTTGTTCTCCCGAGCTGATGCTTTCGAATCGGAAAGCTTTGATTTCCGGTTATGGGAAGTTTGCCGGGCTACATCAGCTGAACCGGGACTCTTCGAACCGGTTTGTATGAAATCCGTCGATGGAAAAACCGGATGCGTGGCGGTTGACGGCGGTTTAGCAATGAGCAACCCGACGGCCGCCGCGATTACCCACGTTCTTCATAACAAACAGGAATTTCCTTTCGTTAGAGGTGTTGAGGACATTTTGGTTCTTTCACTTGGAACAGGGCAGCTTCTAGAAGGAAGCTTCCAATATGAACATGTTAAAAAATGGAAGGCTAAGGACTGGGCTAAGCCAATGGCCCGAA</genome_strand>
        <mrna_strand>AATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTCGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAGCTTTTAGAGGAACAAGGTAGAAGAATTTATCCTTCAAAAGGGTCAAGTTCTGCCGGAAATGGTTTTCTCCGGCGAGTTTTCCGAGGTGGCGCAACCCGTTCAGATACTTCCGGTTTAGAGAAAGTGATGAAAGAAGCATTTATGGATAAAAAAACCGGTCGAAGCCTTACGTTAAAGGATACTCTTAAACCGGTTTTAATCCCCTGTTATGACCTTTCAAGTACGGCGCCGTTTTTGTTCTCCCGAGCTGATGCTTTCGAATCGGAAAGCTTTGATTTCCGGTTATGGGAAGTTTGCCGAGCTACATCAGCTGAACCGGGACTCTTCGAACCGGTTTGTATGAAATCCGTCGATGGAAAAACCGGGTGCGTGGCGGTTGACGGCGGTTTAGCTATGAGCAACCCGACGGCCGCCGCGATTACTCACGTTCTTCATAACAAACAGGAATTTCCTTTTGTTAGAGGTGTTGAGGACATTTTGGTCCTTTCACTTGGAACAGGGCAGCTTCTAGAAGGAAGCTTCCAATATGAACATGTCAAAAAGTGGAAGGCTAAGGACTGGGCTAAGCCAATGGCCCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245960" ref_strand="+" ref_description="SGN-E245960 [cLEF-51-G12]">
      <seq>aatccagaagctagaatcgccgattatttcgacgttgctgttggttccggcgttggaggaattttcacggcgatgttattttcaacgaaggatcaaaaccgtcctgttttccaagctgaagatacatggaaacttctagaggaacaaggtagaagaatttatccttcaaaagggtcgacttctgccggaaatggttttctccggcgagttctccgaggtggcgcaacccgttctgatgcttccggtttagagaaagtgatgaaagaagcatttatggataaaaaaaccggtcgaagccttacgttaaaggatactcttaaaccggttttaatcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="38177" stop="39113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38477" g_stop="38813" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E245960" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38477" e_stop="38813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAACTTCTAGAGGAACAAGGTAGAAGAATTTATCCTTCAAAAGGGTCGACTTCTGCCGGAAATGGTTTTCTCCGGCGAGTTCTCCGAGGTGGCGCAACCCGTTCTGATGCTTCCGGTTTAGAGAAAGTGATGAAAGAAGCATTTATGGATAAAAAAACCGGTCGAAGCCTTACGTTAAAGGATACTCTTAAACCGGTTTTAATCCCCT</genome_strand>
        <mrna_strand>AATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAACTTCTAGAGGAACAAGGTAGAAGAATTTATCCTTCAAAAGGGTCGACTTCTGCCGGAAATGGTTTTCTCCGGCGAGTTCTCCGAGGTGGCGCAACCCGTTCTGATGCTTCCGGTTTAGAGAAAGTGATGAAAGAAGCATTTATGGATAAAAAAACCGGTCGAAGCCTTACGTTAAAGGATACTCTTAAACCGGTTTTAATCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622563" ref_strand="+" ref_description="SGN-E622563 [72931]">
      <seq>aagcttttagaggaacaaggtagaagaatttatccttcaaaagggtcaagttctgccggaaatggttttctccggcgagttttccgaggtggcgcaacccgttcagatacttccggtttagagaaagtgatgaaagaagcatttatggataaaaaaaccggtcgaagccttacgttaaaggatactcttaaaccggttttaatcccctgttatgacctttcaagtacggcgccgtttttgttctcccgagctgatgctttcgaatcggaaagctttgatttccggttatgggaagtttgccgagctacatcagctgaaccgggactcttcgaaccggtttgtatgaaatccgtcgatggaaaaaccgggtgcgtggcggttgacggcggtttagctatgagcaacccgacggccgccgcgattactcacgttcttcataacaaacaggaatttccttttgttagaggtgttgaggacattttggtcctttcacttggaacagggcagcttctagaaggaagcttccaatatgaacatgtcaaaaagtggaaggctaaggactgggctaagccaatggcccgaatctccggcgacggagccgctgatatggttgatcactccgtcgccatggcgtttgggcaatgtcggagcagtaactacgtccgcattcaggctaatggatcgagcttcggtcgttgtggggtgaacatagatgtgatccaagtcctaacaattgtgaaaaggttgtgggaattgcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="38307" stop="41956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38606" g_stop="39277" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39278" i_stop="41567" i_length="2290">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41568" g_stop="41656" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="760" r_length="88" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E622563" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38606" e_stop="39277"/>
          <exon e_start="41568" e_stop="41656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCTAGAGGAACAAGGTAGAAGAATTTATCCTTCAAAAGGGTCGACTTCTGCCGGAAATGGTTTTCTCCGGCGAGTTCTCCGAGGTGGCGCAACCCGTTCTGATGCTTCCGGTTTAGAGAAAGTGATGAAAGAAGCATTTATGGATAAAAAAACCGGTCGAAGCCTTACGTTAAAGGATACTCTTAAACCGGTTTTAATCCCCTGTTATGACCTTTCCAGTACTGCACCGTTTTTGTTCTCCCGAGCTGATGCTTTCGAATCGGAAAGCTTTGATTTCCGGTTATGGGAAGTTTGCCGGGCTACATCAGCTGAACCGGGACTCTTCGAACCGGTTTGTATGAAATCCGTCGATGGAAAAACCGGATGCGTGGCGGTTGACGGCGGTTTAGCAATGAGCAACCCGACGGCCGCCGCGATTACCCACGTTCTTCATAACAAACAGGAATTTCCTTTCGTTAGAGGTGTTGAGGACATTTTGGTTCTTTCACTTGGAACAGGGCAGCTTCTAGAAGGAAGCTTCCAATATGAACATGTTAAAAAATGGAAGGCTAAGGACTGGGCTAAGCCAATGGCCCGAATCTCCGGCGATGGTGCCGCCGATATGGTGGATCACTCCGTCGCCATGGCGTTTGGGCAATGTCGGAGTAGTAATTACGTCCGTATTCAGGTAAATATATTTATCCGCATTCGATATTTATAGTTGCAAAAATTGGTGCGCACGAAGTGAAGTAAACTATATATTACTAAAATTGTTAGATTATAGAAGCTTATCTTAATCATCTAATGTGTGTGTGACGTAGTAATCGATGCAGATAAAGAGTACTGTTGGAATTTCAATTTAAACATGTAAAGTTTGGTGATTTCTCATGTTTATTGAACGAATTTACAGTATAACAAGTAGGTTATGGCTCATAAACTGTGTTAAAAACAAACTAGAAGTACAAATAATTTGTTTGAAATCTAAAAAATGATTGCACTATAGAGTCGGAAATTTCAAACTTAATAATAATATTATATTCAATGAAATTTCATGTATAGTTTGAGGGGCAAAGAATGTATGCAAATCTTTCTCTTGCAATGTAAAAGTAAAAAAATTATTTCCGAGAAATTTTCGTCTTAAGTATAGCAAATTAAAATTGTTACGAGGAATAATATGTCAATTAATAAAGAAAGGTATTCAAGAAAATAACAACAGTGATAATCACGAAATAATGTAGTAACTGAGTAAAATAGAAGTATTAAAATTGAGAAACTACACGTTCATACGTTAAAATTTCGAATTATTTCTCAGTCAACCTATTGTATACATACACTTTATGAAATTAATTCTTGAATCTTGATACATAATTAGAAAAATCATAGTTGTCACTACCAACTAGGGGAATTTTTGTAATGAATGTGTCTCTACTAGAAACAATGTTGTCATTACCAAACAACTGGATAAAGGGGATAGACTAATATCTTGATTGAAAAATAGGAAAATGTGAATGTTAATAAAGTAGATAATAGTAGTAGTAGTAATAATGATAAAGATTGAATTTTTCCCACCTGGGAATATAATAAAGAGTAGTCCTTTTCTGATGTCTAACTGGCAGAAGTGGATAATATCTGATGGTAGCCAGTTGCAGAATCATCAATATGGCACTTTCTGCCAATTTTGTACATTAAATGTTCACAGCTGTTGTTTTCCATATTTAGCTGGGCATGATGACCATTCATCATCATCTAACAGTTCTTTTATTTTTAAAATGTGGTACCTCGATTAATTTTAAAGTTATTTGTTATTTTCATCATCACAGATATCGGACAACATTATTCATCAAAAACTTGAAAAAATGATCTAGCAAAATTTAATTACTCATATTTGACTTGTTTATGTTGACGATTTAAAGATTTTTCATGCTATCGACATATTTTTAAACTAGTAGTATGTGACTTATCTTATTTTTGTGTGATTAATCCATTTATTAGTTATTATGAATAGTTACCTATAATTATCATTTAGGTTATATGTTAGTATAAAAATTTACATTGTGGTATAGAAGGTTAGACTTTAGAGTTATAGAAATTCTCGGGTCACCTTTACCTGTTATAGTAGGTAACGTGCACAAATATCATATTTGAAGGAGCTTCTTCCACCATTTTCTCATCTTTGAGACTGTTAATCTATTACTATTCAGCCAAAGGTGGTTTTTCTAAACCATTTACAGATTACTTATTAAGGAAGACTTTAAAAGATAATGACCCTTACAAGTTAACTATATATAAATATATTGTGTAGTGGATGTAAAAAAGTACTCTGGTTACTTTGTGAGGTAGGAGATTGACCAATGGGATATGCACTAGAGAATATTATATGCATAAAGTATGATAATTGACTTGGTGACATATAATAATCTCTAGTGGAGGATGATTCAGAAGAATAATGGGATAACTTAAACAAATTCAAATATGGAATATATGTTTTTTTGTACTTGCTAATCATTTGACTAAAGTTGTAGTGGGAAGGACTGATACTCTTTATTTTAATTAGAAATTTTGATTTTGAGCTTTGGCATGGAAAAAATCCTGATAGGGAACACGGTTCTTCTTCAATGAAACTTATGCGTCACAAATAAGGATTTGTTGGACCTAAATGCGAGTACCGGAGGCAGCATGAAAAATAAAAAGTGAAACCATAGCTTTTTGTTTACTAAGTTTATATTAACATGCAAAGTAGAATAACTTGTAACTATACAAGTTTCTCTGTGTGGTTTATTAGAATAGTAGATGATTAATGCTCCCTCTAAACTTCAATAATTCCTCTCTGTCTTCCTTGAAATTTAACTTATAAATTGATGTCAGATTGCTAATCTCACTTCTTTACGAACATTTGTTTGTTATCGTTTAGACAATTTAATAGTAAATAATTTCTTTACGTAGTCGATATATAAAAGTTAAGCTCTTCTCGAATGCAGGCTAATGGATCGAGCTTCGGTCGTTGTGGGGTGAACATAGATGCTGATCCAAGTCCTAACAATGTGAAAAAGCTTGTGGGAATTGCAGA</genome_strand>
        <mrna_strand>AAGCTTTTAGAGGAACAAGGTAGAAGAATTTATCCTTCAAAAGGGTCAAGTTCTGCCGGAAATGGTTTTCTCCGGCGAGTTTTCCGAGGTGGCGCAACCCGTTCAGATACTTCCGGTTTAGAGAAAGTGATGAAAGAAGCATTTATGGATAAAAAAACCGGTCGAAGCCTTACGTTAAAGGATACTCTTAAACCGGTTTTAATCCCCTGTTATGACCTTTCAAGTACGGCGCCGTTTTTGTTCTCCCGAGCTGATGCTTTCGAATCGGAAAGCTTTGATTTCCGGTTATGGGAAGTTTGCCGAGCTACATCAGCTGAACCGGGACTCTTCGAACCGGTTTGTATGAAATCCGTCGATGGAAAAACCGGGTGCGTGGCGGTTGACGGCGGTTTAGCTATGAGCAACCCGACGGCCGCCGCGATTACTCACGTTCTTCATAACAAACAGGAATTTCCTTTTGTTAGAGGTGTTGAGGACATTTTGGTCCTTTCACTTGGAACAGGGCAGCTTCTAGAAGGAAGCTTCCAATATGAACATGTCAAAAAGTGGAAGGCTAAGGACTGGGCTAAGCCAATGGCCCGAATCTCCGGCGACGGAGCCGCTGATATGGTTGATCACTCCGTCGCCATGGCGTTTGGGCAATGTCGGAGCAGTAACTACGTCCGCATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGGATCGAGCTTCGGTCGTTGTGGGGTGAACATAGATG-TGATCCAAGTCCTAACAATTGTGAAAAGGTTGTGGGAATTGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704010" ref_strand="+" ref_description="SGN-E704010 [FA23AD12]">
      <seq>aaagctttgatttccggttatgggaagtttgccgggctacatcagctgaaccgggactcttcgaaccggtttgtatgaaatccgtcgatggaaaaaccggatgcgtggcggttgacggcggtttagcaatgagcaacccgacggccgccgcgattacccacgttcttcataacaaacaggaatttcctttcgttagaggtgttgaggacattttggttctttcacttggaacagggcagcttctagaaggaagcttccaatatgaacatgttaaaaaatggaaggctaaggactgggctaagccaatggcccgaatctccggcgatggtgccgccgatatggtggatcactccgtcgccatggcgtttgggcaatgtcggagtagtaattacgtccgtattcaggctaatggatcgagcttcggtcgttgtggggtgaacatagatgctgatccaagtcctaacaatgtgaaaaagcttgtgggaattgcagatgaaatgctgaaacagaaaaatgtagagtccctactattcggtggtaagaaaattgcagaacaaagcaatttccagaaacttgattggtttgctggagaacttgtacaagagcatcagaggaggagttgcaggatagctcccactgttgcatttaagcaacatctcacaaatcaagaaaaataaatgaaaagatcaaaaaagaaagatttggaaaagttgctttcaaaattagagttggtattttaaaaaaaaaaaaaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="38574" stop="47063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38874" g_stop="39277" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39278" i_stop="41567" i_length="2290">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41568" g_stop="41867" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="704" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41868" i_stop="46713" i_length="4846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.681" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46714" g_stop="46763" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="755" r_length="51" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E704010" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38874" e_stop="39277"/>
          <exon e_start="41568" e_stop="41867"/>
          <exon e_start="46714" e_stop="46763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTTGATTTCCGGTTATGGGAAGTTTGCCGGGCTACATCAGCTGAACCGGGACTCTTCGAACCGGTTTGTATGAAATCCGTCGATGGAAAAACCGGATGCGTGGCGGTTGACGGCGGTTTAGCAATGAGCAACCCGACGGCCGCCGCGATTACCCACGTTCTTCATAACAAACAGGAATTTCCTTTCGTTAGAGGTGTTGAGGACATTTTGGTTCTTTCACTTGGAACAGGGCAGCTTCTAGAAGGAAGCTTCCAATATGAACATGTTAAAAAATGGAAGGCTAAGGACTGGGCTAAGCCAATGGCCCGAATCTCCGGCGATGGTGCCGCCGATATGGTGGATCACTCCGTCGCCATGGCGTTTGGGCAATGTCGGAGTAGTAATTACGTCCGTATTCAGGTAAATATATTTATCCGCATTCGATATTTATAGTTGCAAAAATTGGTGCGCACGAAGTGAAGTAAACTATATATTACTAAAATTGTTAGATTATAGAAGCTTATCTTAATCATCTAATGTGTGTGTGACGTAGTAATCGATGCAGATAAAGAGTACTGTTGGAATTTCAATTTAAACATGTAAAGTTTGGTGATTTCTCATGTTTATTGAACGAATTTACAGTATAACAAGTAGGTTATGGCTCATAAACTGTGTTAAAAACAAACTAGAAGTACAAATAATTTGTTTGAAATCTAAAAAATGATTGCACTATAGAGTCGGAAATTTCAAACTTAATAATAATATTATATTCAATGAAATTTCATGTATAGTTTGAGGGGCAAAGAATGTATGCAAATCTTTCTCTTGCAATGTAAAAGTAAAAAAATTATTTCCGAGAAATTTTCGTCTTAAGTATAGCAAATTAAAATTGTTACGAGGAATAATATGTCAATTAATAAAGAAAGGTATTCAAGAAAATAACAACAGTGATAATCACGAAATAATGTAGTAACTGAGTAAAATAGAAGTATTAAAATTGAGAAACTACACGTTCATACGTTAAAATTTCGAATTATTTCTCAGTCAACCTATTGTATACATACACTTTATGAAATTAATTCTTGAATCTTGATACATAATTAGAAAAATCATAGTTGTCACTACCAACTAGGGGAATTTTTGTAATGAATGTGTCTCTACTAGAAACAATGTTGTCATTACCAAACAACTGGATAAAGGGGATAGACTAATATCTTGATTGAAAAATAGGAAAATGTGAATGTTAATAAAGTAGATAATAGTAGTAGTAGTAATAATGATAAAGATTGAATTTTTCCCACCTGGGAATATAATAAAGAGTAGTCCTTTTCTGATGTCTAACTGGCAGAAGTGGATAATATCTGATGGTAGCCAGTTGCAGAATCATCAATATGGCACTTTCTGCCAATTTTGTACATTAAATGTTCACAGCTGTTGTTTTCCATATTTAGCTGGGCATGATGACCATTCATCATCATCTAACAGTTCTTTTATTTTTAAAATGTGGTACCTCGATTAATTTTAAAGTTATTTGTTATTTTCATCATCACAGATATCGGACAACATTATTCATCAAAAACTTGAAAAAATGATCTAGCAAAATTTAATTACTCATATTTGACTTGTTTATGTTGACGATTTAAAGATTTTTCATGCTATCGACATATTTTTAAACTAGTAGTATGTGACTTATCTTATTTTTGTGTGATTAATCCATTTATTAGTTATTATGAATAGTTACCTATAATTATCATTTAGGTTATATGTTAGTATAAAAATTTACATTGTGGTATAGAAGGTTAGACTTTAGAGTTATAGAAATTCTCGGGTCACCTTTACCTGTTATAGTAGGTAACGTGCACAAATATCATATTTGAAGGAGCTTCTTCCACCATTTTCTCATCTTTGAGACTGTTAATCTATTACTATTCAGCCAAAGGTGGTTTTTCTAAACCATTTACAGATTACTTATTAAGGAAGACTTTAAAAGATAATGACCCTTACAAGTTAACTATATATAAATATATTGTGTAGTGGATGTAAAAAAGTACTCTGGTTACTTTGTGAGGTAGGAGATTGACCAATGGGATATGCACTAGAGAATATTATATGCATAAAGTATGATAATTGACTTGGTGACATATAATAATCTCTAGTGGAGGATGATTCAGAAGAATAATGGGATAACTTAAACAAATTCAAATATGGAATATATGTTTTTTTGTACTTGCTAATCATTTGACTAAAGTTGTAGTGGGAAGGACTGATACTCTTTATTTTAATTAGAAATTTTGATTTTGAGCTTTGGCATGGAAAAAATCCTGATAGGGAACACGGTTCTTCTTCAATGAAACTTATGCGTCACAAATAAGGATTTGTTGGACCTAAATGCGAGTACCGGAGGCAGCATGAAAAATAAAAAGTGAAACCATAGCTTTTTGTTTACTAAGTTTATATTAACATGCAAAGTAGAATAACTTGTAACTATACAAGTTTCTCTGTGTGGTTTATTAGAATAGTAGATGATTAATGCTCCCTCTAAACTTCAATAATTCCTCTCTGTCTTCCTTGAAATTTAACTTATAAATTGATGTCAGATTGCTAATCTCACTTCTTTACGAACATTTGTTTGTTATCGTTTAGACAATTTAATAGTAAATAATTTCTTTACGTAGTCGATATATAAAAGTTAAGCTCTTCTCGAATGCAGGCTAATGGATCGAGCTTCGGTCGTTGTGGGGTGAACATAGATGCTGATCCAAGTCCTAACAATGTGAAAAAGCTTGTGGGAATTGCAGATGAAATGCTGAAACAGAAAAATGTAGAGTCCCTACTATTCGGTGGTAAGAAAATTGCAGAACAAAGCAATTTCCAGAAACTTGATTGGTTTGCTGGAGAACTTGTACAAGAGCATCAGAGGAGGAGTTGCAGGATAGCTCCCACTGTTGCATTTAAGCAACATCTCACAAATCAAGAAAAATAAATGAAAAGATCAAAAAAGAAAGATTTGGTAAGTTTTCTTTCTATCCCATCTTTCCCATTTTGTATGATTTGTCCACTGCCATCAACTTGTACTATATTAAATTTTAGTAAAATTTTATATAAATATACATATTTATATGAAATTGCTACACAAAGAAGTAAGGGTGTTGTCTGAAGGGGATGCAACACATGACGTGTATGCTTACCTCCAGCAGAGGCGATTTTAAGATTTTAAGTTTAGATTATTTATATCTATTAAGTGGCGTTGTACGGATCCCATAACATGTATAGTAGACCCGCTCCTTCTGACTGTGAGTTTGAGCCCTACCGGACAAACCTTGGTTTCCAGATGGAAAAAGGGTAAAGGGGTGGGCTCATACTCCAATATAGTGGATATAGTGATTTTAAAATTTTGAATCCGCCTTTATTTGTTTCCAAGCATGTTCAAATCCTCATGGCCATAAATTCTCCCTGGGCTCTCTTTTTTAATCTTGTGTTAACATGCACTTTGTTGGCGAAGCGGTTAATAATAATTTCAATCATCTCACAGGGTGATGGAAGTTTACCCAAGTTATGGTTCTACAATCTTCCAACCAGTCGTGCCTTCTCTGATACAATCAGAGGGCTAATATGTTCGACCAAGCAATCGTTTTATTTATTAATCTTGGTCAATTCAAGTTGATCCGGGGCTCTTTCGATCTCCAAACCGATCCCTTGGATCTTCTTGTAGCCACGAGAAGACTTGGTTCTGTCGGAGTGGATATAGGTTTGAACATACAAGTTTGACAGGAGTCAATAGTTATGGTCCAAATCTTGTACGTGTTAAAAAATCACTCAACATATACCAAAATTAGATTCCAAACTCAACCACTAACACTTACGATCTTTATCCTAGAATCCAAAATCTATAAAGTTCAAAACCTAGATCGGTTTCTTTTATATGTCTTATCTAAGTTTGCTGATGATGTCAACCAGGACCCATAATGCTCATTATTGGAACATTATGATCATACGAACCAAAAACATTGTTTTTTTCTTAGCAATAATTGAAGTTTTGTGAACAGAAATCACAAGAAGATTTAGGTGTTGTTTCTGTGCATCCGTGAGCTCAGTCTTGTCATTTTGTTTTTGTTTTAAAACATCAAATCACTTGATGGGTGGGTGTAATAGTAGTTATGAGAAGAGACTCTTCCATATTTTAGTCTACCGACACTTTTTGGTTCTTGGATTAAGATGACATTTTCATTAATCATCTTATATTGATATTTAAACCCCACAATACTTTTGTTTTTTTGCTATGTTGTGTCATATTCATGTCGGATCCTTAACAATGCATTATTTTTGAAGGGTTCCGTGTTAAGGATTGGAACTTCCCGTAAATTTTTCATTTGTTAGTCAATGATGGAATTTAAAAAAATTAGGATTGATGAATTGAATGATATTTTTGTTGACAAATTTGAAGAATTCGTGGGTAGGCGTGACTGAGGGGTTATATATTGTAATGTTTATATAACATTAGTGTATTTTTACATGTTTTAGCAGATAATCTTTTTTTTATTTTGGGATAACTAGTTTTCGTTTTATAGGTCCACTACCTTTAGTAAATGATCCGATTGAGTAAAAATTCTCACGCAATCAAAGTATAAAAGTTGAACTAATTTACTATAGGCATTTACTTGTCAGTCGTCATCAGGGGTAGAGCTATAATATTAGGTATGTGTTAAAGTCTTCTGACAAGCCTAGTAATATTTAATTTGTGAAATTTTGTAACTAAAACGAACTAAAAATTTGGCGAGGAATTCAGAACCTATAAACTTCAATTACGTATCGGGGGAGATGGGTTTATTGTATAATGTTGCTGAATTGTTACTGTCCGTAGTAAAGAAAGATTTTTAAAGAAAAGGGACAGCTAGCTCTCCCTGTTTCATAAATCATGTTGTGGTTGACCATCGAAAGAAGCACCACCAAAAGATAATTTTGTACAGATAAAATCTCTTTATTTTTAGTCCGGTGTCTTATATGGGTCCTATGCTTGACAAATTTGAATTAATTGTGTTAGTAAGTTTGAAACAATATCAACAACTCCGTATAATTTCACCAGGTGAGATTTGGGAAAGGTAGGATATATCAGACTTTATTCTTATCTTAGAGGTAGATAGGTTAATTTCGAAAGATCAGTTCAAATAACTTCTAACAAAACAATTTAACTTTAAAAAGTATGAAGGTCCAAAGCAGACAAAGCAAATAATTATAAAATCATTACAAAATATTCAAGAAAAACAGAACATAATAATAATACAATAACATGTACGGAAAAGAACCTAAAATACCTTCAAAATATTGAAAATGATACAAAATTATCCTCCATCTACCTATTGGCTCCAAAATAACTTTCTCACCCACTATTGACTTCAAAATATCCTTGTTATCCATCTTTTGGTTCAAACTTGACCACTTATTTAACGGTTTTAAATTTAAATTATTTAAATTTTTTTTAAATACGTGGTTTGTTATAATTTAATTTATTAGTATAATTTATAAATCAATTCACTAGCCACCCATTATTAATTAAACCCCTCCAAATTAATAAATCTGTCACATTATTAATGCAACAACAGAAAAACTATTGTCAATTGAGTGTTTTTAAAAATTTGAGGTGAAAATATCTATATAAGTAAATTATCATACATTCAAGTTTCTAAATGAAAATTATCGATAAGCTTAAAAGTCTGATTATGTTCATCTTAATTTTTCGTACGTCTCAATTATGTGATATTACTTCATAGGTAAAAAATTTTCAAAATAATATATTAAAGGTTTTTAAATTATAAAATTATATTTTTTTTAAAAATGCATGAATTAATTCGGGATGTATTACTTCTTTACCTTTAATCATAAATTTCTAATTAAATCTTGAAAGAGAATTCTTTTGAAACTGTCCTCCTAAATAAGCGGCTCAACCTAAATTTAATTGGGGTTTCGATTCGGACTCGAATAATTTTAGATGTCATTTTCAGGAATCTATAATTTCATTGTGTTTTGGTAGTGTTTATGACGATTTTGATATTATAATTGGGTAATTAATTGGGTGAGGTTTAGTTAGTAATGAGTGAGTAGTGGGTTGGTTTTTGAATTATATTAATAAATTAAATTATAGCTAATAGTTGAATGCCAATTATTTTTAAAAATATATAAAGAGTTTAATTTTAAAAAAATTAAATAAGTGGTCAATTTTGAATCCAAAGGTGGATTTCAAGAGTATTTTGAAGCCAATAGATAGATGAAAAGAATATTCGTACCATTTTCAATACTTTAAGAGTATTTTAAATTCTTTTCCTAACATGTATTAATAGAAGAAAAAGAACTGTTTGAAAAAACACCTTATTTTTCTCTAGCTGTCTCTCATGGTGTCACTTTTACTTTTAAGAGTTGAAAGTTACATTTGAACATACATTAATATCAGGATTCCATCTACTTATTTTCTCTCTTCTTTTTAATGTTGATTGTTTATTTTGGTTTGTAGGTCCCGTCTATCGTCCTTCCATGCTTACACTTTTTTCTTCTCATCTCCAACTTAACATCAACAATATATATCTGGTTTAATCCCACATAGTGGGTCGAAAGAGGGTAGATATATATAAATTTATTCTTACCTAGTCTTATGGAAGAAATGACCGAAGAGGGTAGATATACATAAATTTATTCTTACCTAGTCTTATGGAAGAAATGACGGAAGTACAAGAAATAATACCTAATAACAGAAAGCAACAAATAGTAATTGAATAAAATAATACATACGCAAAAAGAATTAACATATAGTAACAGAAATCGAAGGACAACACATCTCCAACTTAAAAAAAGATTTGGTTAATATAAGATGGAATATAAAGAGTACGTAGCACAAAAACTTGTCAATGAGGAGACAAAATCTCTTCTTATTTGTGTACATGTGGGAGATGATAAATATCCGATGAACTTGTTAAGGTACACATAAATTGATCCGAACACTATCCTAATAAAAAATAATCTTCGATTGAACAGAAAAAGAAACTTGTCAACCTATATATGATTTGGACACAATTATTAAGTAGGGCCAATAAAGTAAGAAAACTATTTGGCAGATAGTGATGTGCAAACCCCTTTTAATCCTACTTGTAATGTTTATAGTACCTTGCCTACAGTGTTTTGAATTATTTCTGATGAACAGGGAGAAAGAATGGTCAAAAGAATAGTCATAGTCTTAGAAAGAAGAGAAAGCAGGCTATTATGTTGATGCTGCTTTGTATCAAATTATTGGTGAACTATGTTTTTCTCGAACTTTTTGAAGATATTGTTAGGTGTGTGTCGAATCTTCCAAAAATAATGCTTTTTTACATGATTCGATTCCACTGTAATAATATTTTTACAAAGTTCAAACAACATAGTTTGAGTGGCTTATTTATACTAGTTGAAATCATAGTTTAAAGCACCTTTCACCCACCCTAGCTCACATTACCTCCGCCTATTGTTCAAGTACTTGTTTTTCAGAAATATATTTTCTTTTTGTCAAAACAATTTTCTTCATTCCAAACACTAAAAATTTCAGTCAAAAGCCTAAATTTTGCATCTCACATGTTTAACAAACTAACTCTTTACAATATATATACACACTTAATCATATTAATAAGGGGCAGATTTAGTGCAAGCATTATGGATTCACGACTTCATATGAACTTGATAACTTTTTGTCCAAATTATGATATATTAGAATATATTTAGCTCGAAACTCAATATGTTGATCCAGCTATTTTATAAATTATTTTAAAATTATTATAGAATATCATAAACTCAATCTTGGATTTGCCCCTAACCATTTTTATCTCCTCTGCATGCAGGAAAAGTTGCTTTCAAAATTAGAGTTGGTATTTT-AAAAAAAAAAAAAGTA</genome_strand>
        <mrna_strand>AAAGCTTTGATTTCCGGTTATGGGAAGTTTGCCGGGCTACATCAGCTGAACCGGGACTCTTCGAACCGGTTTGTATGAAATCCGTCGATGGAAAAACCGGATGCGTGGCGGTTGACGGCGGTTTAGCAATGAGCAACCCGACGGCCGCCGCGATTACCCACGTTCTTCATAACAAACAGGAATTTCCTTTCGTTAGAGGTGTTGAGGACATTTTGGTTCTTTCACTTGGAACAGGGCAGCTTCTAGAAGGAAGCTTCCAATATGAACATGTTAAAAAATGGAAGGCTAAGGACTGGGCTAAGCCAATGGCCCGAATCTCCGGCGATGGTGCCGCCGATATGGTGGATCACTCCGTCGCCATGGCGTTTGGGCAATGTCGGAGTAGTAATTACGTCCGTATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGGATCGAGCTTCGGTCGTTGTGGGGTGAACATAGATGCTGATCCAAGTCCTAACAATGTGAAAAAGCTTGTGGGAATTGCAGATGAAATGCTGAAACAGAAAAATGTAGAGTCCCTACTATTCGGTGGTAAGAAAATTGCAGAACAAAGCAATTTCCAGAAACTTGATTGGTTTGCTGGAGAACTTGTACAAGAGCATCAGAGGAGGAGTTGCAGGATAGCTCCCACTGTTGCATTTAAGCAACATCTCACAAATCAAGAAAAATAAATGAAAAGATCAAAAAAGAAAGATTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGTTGCTTTCAAAATTAGAGTTGGTATTTTAAAAAAAAAAAAAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461331" ref_strand="+" ref_description="SGN-E461331 [cPRO-8-E15]">
      <seq>tatgggaagtttgccgagctacatcagctgaaccgggactcttcgaaccggtttgtatgaaatccgtcgatggaaaaaccgggtgcgtggcggttgacggcggtttagctatgagcaacccgacggccgccgcgattactcacgttcttcataacaaacaggaatttccttttgttagaggtgttgaggacattttggtcctttcacttggaacagggcagcttctagaaggaagcttccaatatgaacatgtcaaaaagtggaaggctaaggactgggctaagccaatggcccgaatctccggcgacggagccgctgatatggttgatcactccgtcgccatggcgtttgggcaatgtcggagtagtaactacgtccgcattcaggctaatggatcgagcctcggtcgttgtggggtgaacatagatgctgatccaagtcctaacaatgtgaaaaagcttgtgggaattgcagatgaaatgcttaaacagaaaaatgtagagtccctgctatttggtggtaagaaaattgcagaacaaagcaatttccagaaacttgattggtttgctggagaacttgtacaagagcatcagaaggagagttgcaggatagctcccactgttgcatttaagcaacacctcancaaatcagaaaaataaatgaaaagatcaaaaaagaaagattttggtaagttttctttctatcccatcttttccatttttgtatgatttgtccactgccatcaacttgtactatatgaattgtagtaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="38592" stop="42254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38892" g_stop="39277" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39278" i_stop="41567" i_length="2290">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41568" g_stop="41954" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="774" r_length="388" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E461331" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38892" e_stop="39277"/>
          <exon e_start="41568" e_stop="41954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGGAAGTTTGCCGGGCTACATCAGCTGAACCGGGACTCTTCGAACCGGTTTGTATGAAATCCGTCGATGGAAAAACCGGATGCGTGGCGGTTGACGGCGGTTTAGCAATGAGCAACCCGACGGCCGCCGCGATTACCCACGTTCTTCATAACAAACAGGAATTTCCTTTCGTTAGAGGTGTTGAGGACATTTTGGTTCTTTCACTTGGAACAGGGCAGCTTCTAGAAGGAAGCTTCCAATATGAACATGTTAAAAAATGGAAGGCTAAGGACTGGGCTAAGCCAATGGCCCGAATCTCCGGCGATGGTGCCGCCGATATGGTGGATCACTCCGTCGCCATGGCGTTTGGGCAATGTCGGAGTAGTAATTACGTCCGTATTCAGGTAAATATATTTATCCGCATTCGATATTTATAGTTGCAAAAATTGGTGCGCACGAAGTGAAGTAAACTATATATTACTAAAATTGTTAGATTATAGAAGCTTATCTTAATCATCTAATGTGTGTGTGACGTAGTAATCGATGCAGATAAAGAGTACTGTTGGAATTTCAATTTAAACATGTAAAGTTTGGTGATTTCTCATGTTTATTGAACGAATTTACAGTATAACAAGTAGGTTATGGCTCATAAACTGTGTTAAAAACAAACTAGAAGTACAAATAATTTGTTTGAAATCTAAAAAATGATTGCACTATAGAGTCGGAAATTTCAAACTTAATAATAATATTATATTCAATGAAATTTCATGTATAGTTTGAGGGGCAAAGAATGTATGCAAATCTTTCTCTTGCAATGTAAAAGTAAAAAAATTATTTCCGAGAAATTTTCGTCTTAAGTATAGCAAATTAAAATTGTTACGAGGAATAATATGTCAATTAATAAAGAAAGGTATTCAAGAAAATAACAACAGTGATAATCACGAAATAATGTAGTAACTGAGTAAAATAGAAGTATTAAAATTGAGAAACTACACGTTCATACGTTAAAATTTCGAATTATTTCTCAGTCAACCTATTGTATACATACACTTTATGAAATTAATTCTTGAATCTTGATACATAATTAGAAAAATCATAGTTGTCACTACCAACTAGGGGAATTTTTGTAATGAATGTGTCTCTACTAGAAACAATGTTGTCATTACCAAACAACTGGATAAAGGGGATAGACTAATATCTTGATTGAAAAATAGGAAAATGTGAATGTTAATAAAGTAGATAATAGTAGTAGTAGTAATAATGATAAAGATTGAATTTTTCCCACCTGGGAATATAATAAAGAGTAGTCCTTTTCTGATGTCTAACTGGCAGAAGTGGATAATATCTGATGGTAGCCAGTTGCAGAATCATCAATATGGCACTTTCTGCCAATTTTGTACATTAAATGTTCACAGCTGTTGTTTTCCATATTTAGCTGGGCATGATGACCATTCATCATCATCTAACAGTTCTTTTATTTTTAAAATGTGGTACCTCGATTAATTTTAAAGTTATTTGTTATTTTCATCATCACAGATATCGGACAACATTATTCATCAAAAACTTGAAAAAATGATCTAGCAAAATTTAATTACTCATATTTGACTTGTTTATGTTGACGATTTAAAGATTTTTCATGCTATCGACATATTTTTAAACTAGTAGTATGTGACTTATCTTATTTTTGTGTGATTAATCCATTTATTAGTTATTATGAATAGTTACCTATAATTATCATTTAGGTTATATGTTAGTATAAAAATTTACATTGTGGTATAGAAGGTTAGACTTTAGAGTTATAGAAATTCTCGGGTCACCTTTACCTGTTATAGTAGGTAACGTGCACAAATATCATATTTGAAGGAGCTTCTTCCACCATTTTCTCATCTTTGAGACTGTTAATCTATTACTATTCAGCCAAAGGTGGTTTTTCTAAACCATTTACAGATTACTTATTAAGGAAGACTTTAAAAGATAATGACCCTTACAAGTTAACTATATATAAATATATTGTGTAGTGGATGTAAAAAAGTACTCTGGTTACTTTGTGAGGTAGGAGATTGACCAATGGGATATGCACTAGAGAATATTATATGCATAAAGTATGATAATTGACTTGGTGACATATAATAATCTCTAGTGGAGGATGATTCAGAAGAATAATGGGATAACTTAAACAAATTCAAATATGGAATATATGTTTTTTTGTACTTGCTAATCATTTGACTAAAGTTGTAGTGGGAAGGACTGATACTCTTTATTTTAATTAGAAATTTTGATTTTGAGCTTTGGCATGGAAAAAATCCTGATAGGGAACACGGTTCTTCTTCAATGAAACTTATGCGTCACAAATAAGGATTTGTTGGACCTAAATGCGAGTACCGGAGGCAGCATGAAAAATAAAAAGTGAAACCATAGCTTTTTGTTTACTAAGTTTATATTAACATGCAAAGTAGAATAACTTGTAACTATACAAGTTTCTCTGTGTGGTTTATTAGAATAGTAGATGATTAATGCTCCCTCTAAACTTCAATAATTCCTCTCTGTCTTCCTTGAAATTTAACTTATAAATTGATGTCAGATTGCTAATCTCACTTCTTTACGAACATTTGTTTGTTATCGTTTAGACAATTTAATAGTAAATAATTTCTTTACGTAGTCGATATATAAAAGTTAAGCTCTTCTCGAATGCAGGCTAATGGATCGAGCTTCGGTCGTTGTGGGGTGAACATAGATGCTGATCCAAGTCCTAACAATGTGAAAAAGCTTGTGGGAATTGCAGATGAAATGCTGAAACAGAAAAATGTAGAGTCCCTACTATTCGGTGGTAAGAAAATTGCAGAACAAAGCAATTTCCAGAAACTTGATTGGTTTGCTGGAGAACTTGTACAAGAGCATCAGAGGAGGAGTTGCAGGATAGCTCCCACTGTTGCATTTAAGCAACATCTCA-CAAATCAAGAAAAATAAATGAAAAGATCAAAAAAGAAAGA-TTTGGTAAGTTTTCTTTCTATCCCATCTTTCCCA-TTTTGTATGATTTGTCCACTGCCATCAACTTGTACTATATTAAATTTTAGTAAAATT</genome_strand>
        <mrna_strand>TATGGGAAGTTTGCCGAGCTACATCAGCTGAACCGGGACTCTTCGAACCGGTTTGTATGAAATCCGTCGATGGAAAAACCGGGTGCGTGGCGGTTGACGGCGGTTTAGCTATGAGCAACCCGACGGCCGCCGCGATTACTCACGTTCTTCATAACAAACAGGAATTTCCTTTTGTTAGAGGTGTTGAGGACATTTTGGTCCTTTCACTTGGAACAGGGCAGCTTCTAGAAGGAAGCTTCCAATATGAACATGTCAAAAAGTGGAAGGCTAAGGACTGGGCTAAGCCAATGGCCCGAATCTCCGGCGACGGAGCCGCTGATATGGTTGATCACTCCGTCGCCATGGCGTTTGGGCAATGTCGGAGTAGTAACTACGTCCGCATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGGATCGAGCCTCGGTCGTTGTGGGGTGAACATAGATGCTGATCCAAGTCCTAACAATGTGAAAAAGCTTGTGGGAATTGCAGATGAAATGCTTAAACAGAAAAATGTAGAGTCCCTGCTATTTGGTGGTAAGAAAATTGCAGAACAAAGCAATTTCCAGAAACTTGATTGGTTTGCTGGAGAACTTGTACAAGAGCATCAGAAGGAGAGTTGCAGGATAGCTCCCACTGTTGCATTTAAGCAACACCTCANCAAATC-AGAAAAATAAATGAAAAGATCAAAAAAGAAAGATTTTGGTAAGTTTTCTTTCTATCCCATCTTTTCCATTTTTGTATGATTTGTCCACTGCCATCAACTTGTACTATA-TGAATTGTAGTAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423747" ref_strand="-" ref_description="SGN-E423747 [STM-42-D3]">
      <seq>gaacagggcagcttctagaaggaagcttccaatatgaacatgtcaaaaaatggaaggctaaggactgggctaagccaatggcccgaatctccggcgacggagccgctgatatggttgatcactccgtcgccatggcgtttgggcaatgtcggagtagtaactacgtccgcattcaggctaatggatcgagcttcggtcgttgtggggtgaacatagatgctgatccaagtcctaacaatgtgaaaaagcttgtgggaattgcagatgaaatgctgaaacagaaaaatgtagagtccctgctatttggtggtaagaaaattgcagaacaaagcaatttccagaaacttgattggtttgctggagaacttgtacaagagcatcagaggaggagttgcaggatagctcccactgttgcatttaagcaacatctcacaaatcaagaaaaataaatgaaaagatcaaaaaagaaagatttggtaagttttctttctatcccatctttcccattttgtatgatttgtccactgccatcaacttgtactatatgaattgtagtaaaattttatataaatataagaatttattgaaaaaaaacaaaaaaaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="38802" stop="42282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39102" g_stop="39277" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39278" i_stop="41567" i_length="2290">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41568" g_stop="42001" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="607" r_length="431" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E423747" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423747" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39102" e_stop="39277"/>
          <exon e_start="41568" e_stop="42001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGGGCAGCTTCTAGAAGGAAGCTTCCAATATGAACATGTTAAAAAATGGAAGGCTAAGGACTGGGCTAAGCCAATGGCCCGAATCTCCGGCGATGGTGCCGCCGATATGGTGGATCACTCCGTCGCCATGGCGTTTGGGCAATGTCGGAGTAGTAATTACGTCCGTATTCAGGTAAATATATTTATCCGCATTCGATATTTATAGTTGCAAAAATTGGTGCGCACGAAGTGAAGTAAACTATATATTACTAAAATTGTTAGATTATAGAAGCTTATCTTAATCATCTAATGTGTGTGTGACGTAGTAATCGATGCAGATAAAGAGTACTGTTGGAATTTCAATTTAAACATGTAAAGTTTGGTGATTTCTCATGTTTATTGAACGAATTTACAGTATAACAAGTAGGTTATGGCTCATAAACTGTGTTAAAAACAAACTAGAAGTACAAATAATTTGTTTGAAATCTAAAAAATGATTGCACTATAGAGTCGGAAATTTCAAACTTAATAATAATATTATATTCAATGAAATTTCATGTATAGTTTGAGGGGCAAAGAATGTATGCAAATCTTTCTCTTGCAATGTAAAAGTAAAAAAATTATTTCCGAGAAATTTTCGTCTTAAGTATAGCAAATTAAAATTGTTACGAGGAATAATATGTCAATTAATAAAGAAAGGTATTCAAGAAAATAACAACAGTGATAATCACGAAATAATGTAGTAACTGAGTAAAATAGAAGTATTAAAATTGAGAAACTACACGTTCATACGTTAAAATTTCGAATTATTTCTCAGTCAACCTATTGTATACATACACTTTATGAAATTAATTCTTGAATCTTGATACATAATTAGAAAAATCATAGTTGTCACTACCAACTAGGGGAATTTTTGTAATGAATGTGTCTCTACTAGAAACAATGTTGTCATTACCAAACAACTGGATAAAGGGGATAGACTAATATCTTGATTGAAAAATAGGAAAATGTGAATGTTAATAAAGTAGATAATAGTAGTAGTAGTAATAATGATAAAGATTGAATTTTTCCCACCTGGGAATATAATAAAGAGTAGTCCTTTTCTGATGTCTAACTGGCAGAAGTGGATAATATCTGATGGTAGCCAGTTGCAGAATCATCAATATGGCACTTTCTGCCAATTTTGTACATTAAATGTTCACAGCTGTTGTTTTCCATATTTAGCTGGGCATGATGACCATTCATCATCATCTAACAGTTCTTTTATTTTTAAAATGTGGTACCTCGATTAATTTTAAAGTTATTTGTTATTTTCATCATCACAGATATCGGACAACATTATTCATCAAAAACTTGAAAAAATGATCTAGCAAAATTTAATTACTCATATTTGACTTGTTTATGTTGACGATTTAAAGATTTTTCATGCTATCGACATATTTTTAAACTAGTAGTATGTGACTTATCTTATTTTTGTGTGATTAATCCATTTATTAGTTATTATGAATAGTTACCTATAATTATCATTTAGGTTATATGTTAGTATAAAAATTTACATTGTGGTATAGAAGGTTAGACTTTAGAGTTATAGAAATTCTCGGGTCACCTTTACCTGTTATAGTAGGTAACGTGCACAAATATCATATTTGAAGGAGCTTCTTCCACCATTTTCTCATCTTTGAGACTGTTAATCTATTACTATTCAGCCAAAGGTGGTTTTTCTAAACCATTTACAGATTACTTATTAAGGAAGACTTTAAAAGATAATGACCCTTACAAGTTAACTATATATAAATATATTGTGTAGTGGATGTAAAAAAGTACTCTGGTTACTTTGTGAGGTAGGAGATTGACCAATGGGATATGCACTAGAGAATATTATATGCATAAAGTATGATAATTGACTTGGTGACATATAATAATCTCTAGTGGAGGATGATTCAGAAGAATAATGGGATAACTTAAACAAATTCAAATATGGAATATATGTTTTTTTGTACTTGCTAATCATTTGACTAAAGTTGTAGTGGGAAGGACTGATACTCTTTATTTTAATTAGAAATTTTGATTTTGAGCTTTGGCATGGAAAAAATCCTGATAGGGAACACGGTTCTTCTTCAATGAAACTTATGCGTCACAAATAAGGATTTGTTGGACCTAAATGCGAGTACCGGAGGCAGCATGAAAAATAAAAAGTGAAACCATAGCTTTTTGTTTACTAAGTTTATATTAACATGCAAAGTAGAATAACTTGTAACTATACAAGTTTCTCTGTGTGGTTTATTAGAATAGTAGATGATTAATGCTCCCTCTAAACTTCAATAATTCCTCTCTGTCTTCCTTGAAATTTAACTTATAAATTGATGTCAGATTGCTAATCTCACTTCTTTACGAACATTTGTTTGTTATCGTTTAGACAATTTAATAGTAAATAATTTCTTTACGTAGTCGATATATAAAAGTTAAGCTCTTCTCGAATGCAGGCTAATGGATCGAGCTTCGGTCGTTGTGGGGTGAACATAGATGCTGATCCAAGTCCTAACAATGTGAAAAAGCTTGTGGGAATTGCAGATGAAATGCTGAAACAGAAAAATGTAGAGTCCCTACTATTCGGTGGTAAGAAAATTGCAGAACAAAGCAATTTCCAGAAACTTGATTGGTTTGCTGGAGAACTTGTACAAGAGCATCAGAGGAGGAGTTGCAGGATAGCTCCCACTGTTGCATTTAAGCAACATCTCACAAATCAAGAAAAATAAATGAAAAGATCAAAAAAGAAAGATTTGGTAAGTTTTCTTTCTATCCCATCTTTCCCATTTTGTATGATTTGTCCACTGCCATCAACTTGTACTATATTAAATTTTAGTAAAATTTTATATAAATATACATATTTATATGAAATTGCTACACAAAGAAGTAA</genome_strand>
        <mrna_strand>GAACAGGGCAGCTTCTAGAAGGAAGCTTCCAATATGAACATGTCAAAAAATGGAAGGCTAAGGACTGGGCTAAGCCAATGGCCCGAATCTCCGGCGACGGAGCCGCTGATATGGTTGATCACTCCGTCGCCATGGCGTTTGGGCAATGTCGGAGTAGTAACTACGTCCGCATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGGATCGAGCTTCGGTCGTTGTGGGGTGAACATAGATGCTGATCCAAGTCCTAACAATGTGAAAAAGCTTGTGGGAATTGCAGATGAAATGCTGAAACAGAAAAATGTAGAGTCCCTGCTATTTGGTGGTAAGAAAATTGCAGAACAAAGCAATTTCCAGAAACTTGATTGGTTTGCTGGAGAACTTGTACAAGAGCATCAGAGGAGGAGTTGCAGGATAGCTCCCACTGTTGCATTTAAGCAACATCTCACAAATCAAGAAAAATAAATGAAAAGATCAAAAAAGAAAGATTTGGTAAGTTTTCTTTCTATCCCATCTTTCCCATTTTGTATGATTTGTCCACTGCCATCAACTTGTACTATA-TGAATTGTAGTAAAATTTTATATAAATATAAGAATTTAT-TGAAA-AAAAACAAAAAAAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422753" ref_strand="+" ref_description="SGN-E422753 [STM-40-N16]">
      <seq>tactacaattcatatagtacaagttgatggcagtggacaaatcatacaatttgggaaagatgggatagaaagaaaacttaccaaatctttcttttttgatcttttcatttatttttcttgatttgtgaggtgttgcttaaatgcaacagtgggagctatcctgcaactcctcctctgatgctcttgtacaagttctccagcaaaccaatcaagtttctggaaattgctttgttctgcaattttcttaccaccaaatagcagggactctacatttttctgtttaagcatttcatctgcaattcccacaagctttttcacattgttaggacttggatcagcatctatgttcaccccacaacgaccgaggctcgatccattagcctgaatgcggacgtagttactactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="42249" stop="41245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41949" g_stop="41566" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E422753" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41949" e_stop="41566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTAAAATTTAATATAGTACAAGTTGATGGCAGTGGACAAATCATACAAAATGGGAAAGATGGGATAGAAAGAAAACTTACCAAATCTTTCTTTTTTGATCTTTTCATTTATTTTTCTTGATTTGTGAGATGTTGCTTAAATGCAACAGTGGGAGCTATCCTGCAACTCCTCCTCTGATGCTCTTGTACAAGTTCTCCAGCAAACCAATCAAGTTTCTGGAAATTGCTTTGTTCTGCAATTTTCTTACCACCGAATAGTAGGGACTCTACATTTTTCTGTTTCAGCATTTCATCTGCAATTCCCACAAGCTTTTTCACATTGTTAGGACTTGGATCAGCATCTATGTTCACCCCACAACGACCGAAGCTCGATCCATTAGCCT</genome_strand>
        <mrna_strand>TACTACAA-TTCATATAGTACAAGTTGATGGCAGTGGACAAATCATACAATTTGGGAAAGATGGGATAGAAAGAAAACTTACCAAATCTTTCTTTTTTGATCTTTTCATTTATTTTTCTTGATTTGTGAGGTGTTGCTTAAATGCAACAGTGGGAGCTATCCTGCAACTCCTCCTCTGATGCTCTTGTACAAGTTCTCCAGCAAACCAATCAAGTTTCTGGAAATTGCTTTGTTCTGCAATTTTCTTACCACCAAATAGCAGGGACTCTACATTTTTCTGTTTAAGCATTTCATCTGCAATTCCCACAAGCTTTTTCACATTGTTAGGACTTGGATCAGCATCTATGTTCACCCCACAACGACCGAGGCTCGATCCATTAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543749" ref_strand="+" ref_description="SGN-E543749 [TUS-65-L16](-)">
      <seq>agtagtaattacgtccgtattcaggctaatggatcgagcttcggtcgttgtggggtgaacatagatgctgatccaagtcctaacaatgtgaaaaagcttgtgggaattgcagatgaaatgctgaaacagaaaaatgtagagtccctactattcggtggtaagaaaattgcagaacaaagcaatttccagaaacttgattggtttgctggagaacttgtacaagagcatcagaggaggagttgcaggatagctcccactgttgcatttaagcaacatctcacaaatcaagaaaaataaatgaaaagatcaaaaaagaaagatttggaaaagttgctttcaaaattagagttggtattttaaaaaaaaaaaaagtaaagatgataaaatagtaacctttactttttggaagagtgaaagataaagctagtgggttccttcggggaaatttcatggattgaagtgaaaaggacattcgattgtttataatgagaaaaaaaaaagagaacaagaagggatttgatgaatcttggtgggaacttttttgccttccataggacaggcattgtgatgattgccttttttataaaatgtttattcgtatagagtgtttatattaaatgaaggtaactataaaaagaaatattcaatgcgtaatcatgattgagagataaatgtgtgtatgtatagacatgttatgtattcttgatttggtgcaagtattcggtgtagataaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="41245" stop="47425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41568" g_stop="41867" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="324" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41868" i_stop="46713" i_length="4846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.681" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46714" g_stop="47120" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="731" r_length="407" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="732" polyA_stop="750"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E543749" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41568" e_stop="41867"/>
          <exon e_start="46714" e_stop="47120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAATGGATCGAGCTTCGGTCGTTGTGGGGTGAACATAGATGCTGATCCAAGTCCTAACAATGTGAAAAAGCTTGTGGGAATTGCAGATGAAATGCTGAAACAGAAAAATGTAGAGTCCCTACTATTCGGTGGTAAGAAAATTGCAGAACAAAGCAATTTCCAGAAACTTGATTGGTTTGCTGGAGAACTTGTACAAGAGCATCAGAGGAGGAGTTGCAGGATAGCTCCCACTGTTGCATTTAAGCAACATCTCACAAATCAAGAAAAATAAATGAAAAGATCAAAAAAGAAAGATTTGGTAAGTTTTCTTTCTATCCCATCTTTCCCATTTTGTATGATTTGTCCACTGCCATCAACTTGTACTATATTAAATTTTAGTAAAATTTTATATAAATATACATATTTATATGAAATTGCTACACAAAGAAGTAAGGGTGTTGTCTGAAGGGGATGCAACACATGACGTGTATGCTTACCTCCAGCAGAGGCGATTTTAAGATTTTAAGTTTAGATTATTTATATCTATTAAGTGGCGTTGTACGGATCCCATAACATGTATAGTAGACCCGCTCCTTCTGACTGTGAGTTTGAGCCCTACCGGACAAACCTTGGTTTCCAGATGGAAAAAGGGTAAAGGGGTGGGCTCATACTCCAATATAGTGGATATAGTGATTTTAAAATTTTGAATCCGCCTTTATTTGTTTCCAAGCATGTTCAAATCCTCATGGCCATAAATTCTCCCTGGGCTCTCTTTTTTAATCTTGTGTTAACATGCACTTTGTTGGCGAAGCGGTTAATAATAATTTCAATCATCTCACAGGGTGATGGAAGTTTACCCAAGTTATGGTTCTACAATCTTCCAACCAGTCGTGCCTTCTCTGATACAATCAGAGGGCTAATATGTTCGACCAAGCAATCGTTTTATTTATTAATCTTGGTCAATTCAAGTTGATCCGGGGCTCTTTCGATCTCCAAACCGATCCCTTGGATCTTCTTGTAGCCACGAGAAGACTTGGTTCTGTCGGAGTGGATATAGGTTTGAACATACAAGTTTGACAGGAGTCAATAGTTATGGTCCAAATCTTGTACGTGTTAAAAAATCACTCAACATATACCAAAATTAGATTCCAAACTCAACCACTAACACTTACGATCTTTATCCTAGAATCCAAAATCTATAAAGTTCAAAACCTAGATCGGTTTCTTTTATATGTCTTATCTAAGTTTGCTGATGATGTCAACCAGGACCCATAATGCTCATTATTGGAACATTATGATCATACGAACCAAAAACATTGTTTTTTTCTTAGCAATAATTGAAGTTTTGTGAACAGAAATCACAAGAAGATTTAGGTGTTGTTTCTGTGCATCCGTGAGCTCAGTCTTGTCATTTTGTTTTTGTTTTAAAACATCAAATCACTTGATGGGTGGGTGTAATAGTAGTTATGAGAAGAGACTCTTCCATATTTTAGTCTACCGACACTTTTTGGTTCTTGGATTAAGATGACATTTTCATTAATCATCTTATATTGATATTTAAACCCCACAATACTTTTGTTTTTTTGCTATGTTGTGTCATATTCATGTCGGATCCTTAACAATGCATTATTTTTGAAGGGTTCCGTGTTAAGGATTGGAACTTCCCGTAAATTTTTCATTTGTTAGTCAATGATGGAATTTAAAAAAATTAGGATTGATGAATTGAATGATATTTTTGTTGACAAATTTGAAGAATTCGTGGGTAGGCGTGACTGAGGGGTTATATATTGTAATGTTTATATAACATTAGTGTATTTTTACATGTTTTAGCAGATAATCTTTTTTTTATTTTGGGATAACTAGTTTTCGTTTTATAGGTCCACTACCTTTAGTAAATGATCCGATTGAGTAAAAATTCTCACGCAATCAAAGTATAAAAGTTGAACTAATTTACTATAGGCATTTACTTGTCAGTCGTCATCAGGGGTAGAGCTATAATATTAGGTATGTGTTAAAGTCTTCTGACAAGCCTAGTAATATTTAATTTGTGAAATTTTGTAACTAAAACGAACTAAAAATTTGGCGAGGAATTCAGAACCTATAAACTTCAATTACGTATCGGGGGAGATGGGTTTATTGTATAATGTTGCTGAATTGTTACTGTCCGTAGTAAAGAAAGATTTTTAAAGAAAAGGGACAGCTAGCTCTCCCTGTTTCATAAATCATGTTGTGGTTGACCATCGAAAGAAGCACCACCAAAAGATAATTTTGTACAGATAAAATCTCTTTATTTTTAGTCCGGTGTCTTATATGGGTCCTATGCTTGACAAATTTGAATTAATTGTGTTAGTAAGTTTGAAACAATATCAACAACTCCGTATAATTTCACCAGGTGAGATTTGGGAAAGGTAGGATATATCAGACTTTATTCTTATCTTAGAGGTAGATAGGTTAATTTCGAAAGATCAGTTCAAATAACTTCTAACAAAACAATTTAACTTTAAAAAGTATGAAGGTCCAAAGCAGACAAAGCAAATAATTATAAAATCATTACAAAATATTCAAGAAAAACAGAACATAATAATAATACAATAACATGTACGGAAAAGAACCTAAAATACCTTCAAAATATTGAAAATGATACAAAATTATCCTCCATCTACCTATTGGCTCCAAAATAACTTTCTCACCCACTATTGACTTCAAAATATCCTTGTTATCCATCTTTTGGTTCAAACTTGACCACTTATTTAACGGTTTTAAATTTAAATTATTTAAATTTTTTTTAAATACGTGGTTTGTTATAATTTAATTTATTAGTATAATTTATAAATCAATTCACTAGCCACCCATTATTAATTAAACCCCTCCAAATTAATAAATCTGTCACATTATTAATGCAACAACAGAAAAACTATTGTCAATTGAGTGTTTTTAAAAATTTGAGGTGAAAATATCTATATAAGTAAATTATCATACATTCAAGTTTCTAAATGAAAATTATCGATAAGCTTAAAAGTCTGATTATGTTCATCTTAATTTTTCGTACGTCTCAATTATGTGATATTACTTCATAGGTAAAAAATTTTCAAAATAATATATTAAAGGTTTTTAAATTATAAAATTATATTTTTTTTAAAAATGCATGAATTAATTCGGGATGTATTACTTCTTTACCTTTAATCATAAATTTCTAATTAAATCTTGAAAGAGAATTCTTTTGAAACTGTCCTCCTAAATAAGCGGCTCAACCTAAATTTAATTGGGGTTTCGATTCGGACTCGAATAATTTTAGATGTCATTTTCAGGAATCTATAATTTCATTGTGTTTTGGTAGTGTTTATGACGATTTTGATATTATAATTGGGTAATTAATTGGGTGAGGTTTAGTTAGTAATGAGTGAGTAGTGGGTTGGTTTTTGAATTATATTAATAAATTAAATTATAGCTAATAGTTGAATGCCAATTATTTTTAAAAATATATAAAGAGTTTAATTTTAAAAAAATTAAATAAGTGGTCAATTTTGAATCCAAAGGTGGATTTCAAGAGTATTTTGAAGCCAATAGATAGATGAAAAGAATATTCGTACCATTTTCAATACTTTAAGAGTATTTTAAATTCTTTTCCTAACATGTATTAATAGAAGAAAAAGAACTGTTTGAAAAAACACCTTATTTTTCTCTAGCTGTCTCTCATGGTGTCACTTTTACTTTTAAGAGTTGAAAGTTACATTTGAACATACATTAATATCAGGATTCCATCTACTTATTTTCTCTCTTCTTTTTAATGTTGATTGTTTATTTTGGTTTGTAGGTCCCGTCTATCGTCCTTCCATGCTTACACTTTTTTCTTCTCATCTCCAACTTAACATCAACAATATATATCTGGTTTAATCCCACATAGTGGGTCGAAAGAGGGTAGATATATATAAATTTATTCTTACCTAGTCTTATGGAAGAAATGACCGAAGAGGGTAGATATACATAAATTTATTCTTACCTAGTCTTATGGAAGAAATGACGGAAGTACAAGAAATAATACCTAATAACAGAAAGCAACAAATAGTAATTGAATAAAATAATACATACGCAAAAAGAATTAACATATAGTAACAGAAATCGAAGGACAACACATCTCCAACTTAAAAAAAGATTTGGTTAATATAAGATGGAATATAAAGAGTACGTAGCACAAAAACTTGTCAATGAGGAGACAAAATCTCTTCTTATTTGTGTACATGTGGGAGATGATAAATATCCGATGAACTTGTTAAGGTACACATAAATTGATCCGAACACTATCCTAATAAAAAATAATCTTCGATTGAACAGAAAAAGAAACTTGTCAACCTATATATGATTTGGACACAATTATTAAGTAGGGCCAATAAAGTAAGAAAACTATTTGGCAGATAGTGATGTGCAAACCCCTTTTAATCCTACTTGTAATGTTTATAGTACCTTGCCTACAGTGTTTTGAATTATTTCTGATGAACAGGGAGAAAGAATGGTCAAAAGAATAGTCATAGTCTTAGAAAGAAGAGAAAGCAGGCTATTATGTTGATGCTGCTTTGTATCAAATTATTGGTGAACTATGTTTTTCTCGAACTTTTTGAAGATATTGTTAGGTGTGTGTCGAATCTTCCAAAAATAATGCTTTTTTACATGATTCGATTCCACTGTAATAATATTTTTACAAAGTTCAAACAACATAGTTTGAGTGGCTTATTTATACTAGTTGAAATCATAGTTTAAAGCACCTTTCACCCACCCTAGCTCACATTACCTCCGCCTATTGTTCAAGTACTTGTTTTTCAGAAATATATTTTCTTTTTGTCAAAACAATTTTCTTCATTCCAAACACTAAAAATTTCAGTCAAAAGCCTAAATTTTGCATCTCACATGTTTAACAAACTAACTCTTTACAATATATATACACACTTAATCATATTAATAAGGGGCAGATTTAGTGCAAGCATTATGGATTCACGACTTCATATGAACTTGATAACTTTTTGTCCAAATTATGATATATTAGAATATATTTAGCTCGAAACTCAATATGTTGATCCAGCTATTTTATAAATTATTTTAAAATTATTATAGAATATCATAAACTCAATCTTGGATTTGCCCCTAACCATTTTTATCTCCTCTGCATGCAGGAAAAGTTGCTTTCAAAATTAGAGTTGGTATTTTAAAAAAAAAAAAAGTAAAGATGATAAAATAGTAACCTTTACTTTTTGGAAGAGTGAAAGATAAAGCTAGTGGGTTCCTTCGGGGAAATTTCATGGATTGAAGTGAAAAGGACATTCGATTGTTTATAATGAGAAAAAAAAAAGAGAACAAGAAGGGATTTGATGAATCTTGGTGGGAACTTTTTTGCCTTCCATAGGACAGGCATTGTGATGATTGCCTTTTTTATAAAATGTTTATTCGTATAGAGTGTTTATATTAAATGAAGGTAACTATAAAAAGAAATATTCAATGCGTAATCATGATTGAGAGATAAATGTGTGTATGTATAGACATGTTATGTATTCTTGATTTGGTGCAAGTATTCGGTGTAGAT</genome_strand>
        <mrna_strand>GCTAATGGATCGAGCTTCGGTCGTTGTGGGGTGAACATAGATGCTGATCCAAGTCCTAACAATGTGAAAAAGCTTGTGGGAATTGCAGATGAAATGCTGAAACAGAAAAATGTAGAGTCCCTACTATTCGGTGGTAAGAAAATTGCAGAACAAAGCAATTTCCAGAAACTTGATTGGTTTGCTGGAGAACTTGTACAAGAGCATCAGAGGAGGAGTTGCAGGATAGCTCCCACTGTTGCATTTAAGCAACATCTCACAAATCAAGAAAAATAAATGAAAAGATCAAAAAAGAAAGATTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGTTGCTTTCAAAATTAGAGTTGGTATTTTAAAAAAAAAAAAAGTAAAGATGATAAAATAGTAACCTTTACTTTTTGGAAGAGTGAAAGATAAAGCTAGTGGGTTCCTTCGGGGAAATTTCATGGATTGAAGTGAAAAGGACATTCGATTGTTTATAATGAGAAAAAAAAAAGAGAACAAGAAGGGATTTGATGAATCTTGGTGGGAACTTTTTTGCCTTCCATAGGACAGGCATTGTGATGATTGCCTTTTTTATAAAATGTTTATTCGTATAGAGTGTTTATATTAAATGAAGGTAACTATAAAAAGAAATATTCAATGCGTAATCATGATTGAGAGATAAATGTGTGTATGTATAGACATGTTATGTATTCTTGATTTGGTGCAAGTATTCGGTGTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275643" ref_strand="-" ref_description="SGN-E275643 [cLEN-18-K7]">
      <seq>tgcagcatagctcccactgttgcatttaagcaacatctctcaaatcaagaaaaattaatgaaaagatcaataaagaaaaatttggaaaagttgctttccaaattagagttggtattttaaaaaaaaataaagtaaagatgataaaatagtaccctttactttttggaagagtgaaagataaagctagtgggttccttcggggaaatttcatggattgaagtgaaaaggacattcgattgtttataatgagaaaaaaaaaatcagaacaagaagggatttgatgaatcttggtgggaacttttttgccttccataggacaggcattgtgatgattgccttttttataaaatgtttattcgtatagagtgtttatattaaatgaaggtaactataaaaagaaatattcaatgcgtaatcatgattgagagataaatgtgtgtatgtatagacatgttatgtattcttgatttggtgcaagtattcggtgtagatataaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="41484" stop="57707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41784" g_stop="41867" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41868" i_stop="46713" i_length="4846">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.681" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46714" g_stop="47122" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="494" r_length="410" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47123" i_stop="47867" i_length="745">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47868" g_stop="47888" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="515" r_length="21" r_score="0.810"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E275643" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275643" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41784" e_stop="41867"/>
          <exon e_start="46714" e_stop="47122"/>
          <exon e_start="47868" e_stop="47888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGGATAGCTCCCACTGTTGCATTTAAGCAACATCTCACAAATCAAGAAAAATAAATGAAAAGATCAAAAAAGAAAGATTTGGTAAGTTTTCTTTCTATCCCATCTTTCCCATTTTGTATGATTTGTCCACTGCCATCAACTTGTACTATATTAAATTTTAGTAAAATTTTATATAAATATACATATTTATATGAAATTGCTACACAAAGAAGTAAGGGTGTTGTCTGAAGGGGATGCAACACATGACGTGTATGCTTACCTCCAGCAGAGGCGATTTTAAGATTTTAAGTTTAGATTATTTATATCTATTAAGTGGCGTTGTACGGATCCCATAACATGTATAGTAGACCCGCTCCTTCTGACTGTGAGTTTGAGCCCTACCGGACAAACCTTGGTTTCCAGATGGAAAAAGGGTAAAGGGGTGGGCTCATACTCCAATATAGTGGATATAGTGATTTTAAAATTTTGAATCCGCCTTTATTTGTTTCCAAGCATGTTCAAATCCTCATGGCCATAAATTCTCCCTGGGCTCTCTTTTTTAATCTTGTGTTAACATGCACTTTGTTGGCGAAGCGGTTAATAATAATTTCAATCATCTCACAGGGTGATGGAAGTTTACCCAAGTTATGGTTCTACAATCTTCCAACCAGTCGTGCCTTCTCTGATACAATCAGAGGGCTAATATGTTCGACCAAGCAATCGTTTTATTTATTAATCTTGGTCAATTCAAGTTGATCCGGGGCTCTTTCGATCTCCAAACCGATCCCTTGGATCTTCTTGTAGCCACGAGAAGACTTGGTTCTGTCGGAGTGGATATAGGTTTGAACATACAAGTTTGACAGGAGTCAATAGTTATGGTCCAAATCTTGTACGTGTTAAAAAATCACTCAACATATACCAAAATTAGATTCCAAACTCAACCACTAACACTTACGATCTTTATCCTAGAATCCAAAATCTATAAAGTTCAAAACCTAGATCGGTTTCTTTTATATGTCTTATCTAAGTTTGCTGATGATGTCAACCAGGACCCATAATGCTCATTATTGGAACATTATGATCATACGAACCAAAAACATTGTTTTTTTCTTAGCAATAATTGAAGTTTTGTGAACAGAAATCACAAGAAGATTTAGGTGTTGTTTCTGTGCATCCGTGAGCTCAGTCTTGTCATTTTGTTTTTGTTTTAAAACATCAAATCACTTGATGGGTGGGTGTAATAGTAGTTATGAGAAGAGACTCTTCCATATTTTAGTCTACCGACACTTTTTGGTTCTTGGATTAAGATGACATTTTCATTAATCATCTTATATTGATATTTAAACCCCACAATACTTTTGTTTTTTTGCTATGTTGTGTCATATTCATGTCGGATCCTTAACAATGCATTATTTTTGAAGGGTTCCGTGTTAAGGATTGGAACTTCCCGTAAATTTTTCATTTGTTAGTCAATGATGGAATTTAAAAAAATTAGGATTGATGAATTGAATGATATTTTTGTTGACAAATTTGAAGAATTCGTGGGTAGGCGTGACTGAGGGGTTATATATTGTAATGTTTATATAACATTAGTGTATTTTTACATGTTTTAGCAGATAATCTTTTTTTTATTTTGGGATAACTAGTTTTCGTTTTATAGGTCCACTACCTTTAGTAAATGATCCGATTGAGTAAAAATTCTCACGCAATCAAAGTATAAAAGTTGAACTAATTTACTATAGGCATTTACTTGTCAGTCGTCATCAGGGGTAGAGCTATAATATTAGGTATGTGTTAAAGTCTTCTGACAAGCCTAGTAATATTTAATTTGTGAAATTTTGTAACTAAAACGAACTAAAAATTTGGCGAGGAATTCAGAACCTATAAACTTCAATTACGTATCGGGGGAGATGGGTTTATTGTATAATGTTGCTGAATTGTTACTGTCCGTAGTAAAGAAAGATTTTTAAAGAAAAGGGACAGCTAGCTCTCCCTGTTTCATAAATCATGTTGTGGTTGACCATCGAAAGAAGCACCACCAAAAGATAATTTTGTACAGATAAAATCTCTTTATTTTTAGTCCGGTGTCTTATATGGGTCCTATGCTTGACAAATTTGAATTAATTGTGTTAGTAAGTTTGAAACAATATCAACAACTCCGTATAATTTCACCAGGTGAGATTTGGGAAAGGTAGGATATATCAGACTTTATTCTTATCTTAGAGGTAGATAGGTTAATTTCGAAAGATCAGTTCAAATAACTTCTAACAAAACAATTTAACTTTAAAAAGTATGAAGGTCCAAAGCAGACAAAGCAAATAATTATAAAATCATTACAAAATATTCAAGAAAAACAGAACATAATAATAATACAATAACATGTACGGAAAAGAACCTAAAATACCTTCAAAATATTGAAAATGATACAAAATTATCCTCCATCTACCTATTGGCTCCAAAATAACTTTCTCACCCACTATTGACTTCAAAATATCCTTGTTATCCATCTTTTGGTTCAAACTTGACCACTTATTTAACGGTTTTAAATTTAAATTATTTAAATTTTTTTTAAATACGTGGTTTGTTATAATTTAATTTATTAGTATAATTTATAAATCAATTCACTAGCCACCCATTATTAATTAAACCCCTCCAAATTAATAAATCTGTCACATTATTAATGCAACAACAGAAAAACTATTGTCAATTGAGTGTTTTTAAAAATTTGAGGTGAAAATATCTATATAAGTAAATTATCATACATTCAAGTTTCTAAATGAAAATTATCGATAAGCTTAAAAGTCTGATTATGTTCATCTTAATTTTTCGTACGTCTCAATTATGTGATATTACTTCATAGGTAAAAAATTTTCAAAATAATATATTAAAGGTTTTTAAATTATAAAATTATATTTTTTTTAAAAATGCATGAATTAATTCGGGATGTATTACTTCTTTACCTTTAATCATAAATTTCTAATTAAATCTTGAAAGAGAATTCTTTTGAAACTGTCCTCCTAAATAAGCGGCTCAACCTAAATTTAATTGGGGTTTCGATTCGGACTCGAATAATTTTAGATGTCATTTTCAGGAATCTATAATTTCATTGTGTTTTGGTAGTGTTTATGACGATTTTGATATTATAATTGGGTAATTAATTGGGTGAGGTTTAGTTAGTAATGAGTGAGTAGTGGGTTGGTTTTTGAATTATATTAATAAATTAAATTATAGCTAATAGTTGAATGCCAATTATTTTTAAAAATATATAAAGAGTTTAATTTTAAAAAAATTAAATAAGTGGTCAATTTTGAATCCAAAGGTGGATTTCAAGAGTATTTTGAAGCCAATAGATAGATGAAAAGAATATTCGTACCATTTTCAATACTTTAAGAGTATTTTAAATTCTTTTCCTAACATGTATTAATAGAAGAAAAAGAACTGTTTGAAAAAACACCTTATTTTTCTCTAGCTGTCTCTCATGGTGTCACTTTTACTTTTAAGAGTTGAAAGTTACATTTGAACATACATTAATATCAGGATTCCATCTACTTATTTTCTCTCTTCTTTTTAATGTTGATTGTTTATTTTGGTTTGTAGGTCCCGTCTATCGTCCTTCCATGCTTACACTTTTTTCTTCTCATCTCCAACTTAACATCAACAATATATATCTGGTTTAATCCCACATAGTGGGTCGAAAGAGGGTAGATATATATAAATTTATTCTTACCTAGTCTTATGGAAGAAATGACCGAAGAGGGTAGATATACATAAATTTATTCTTACCTAGTCTTATGGAAGAAATGACGGAAGTACAAGAAATAATACCTAATAACAGAAAGCAACAAATAGTAATTGAATAAAATAATACATACGCAAAAAGAATTAACATATAGTAACAGAAATCGAAGGACAACACATCTCCAACTTAAAAAAAGATTTGGTTAATATAAGATGGAATATAAAGAGTACGTAGCACAAAAACTTGTCAATGAGGAGACAAAATCTCTTCTTATTTGTGTACATGTGGGAGATGATAAATATCCGATGAACTTGTTAAGGTACACATAAATTGATCCGAACACTATCCTAATAAAAAATAATCTTCGATTGAACAGAAAAAGAAACTTGTCAACCTATATATGATTTGGACACAATTATTAAGTAGGGCCAATAAAGTAAGAAAACTATTTGGCAGATAGTGATGTGCAAACCCCTTTTAATCCTACTTGTAATGTTTATAGTACCTTGCCTACAGTGTTTTGAATTATTTCTGATGAACAGGGAGAAAGAATGGTCAAAAGAATAGTCATAGTCTTAGAAAGAAGAGAAAGCAGGCTATTATGTTGATGCTGCTTTGTATCAAATTATTGGTGAACTATGTTTTTCTCGAACTTTTTGAAGATATTGTTAGGTGTGTGTCGAATCTTCCAAAAATAATGCTTTTTTACATGATTCGATTCCACTGTAATAATATTTTTACAAAGTTCAAACAACATAGTTTGAGTGGCTTATTTATACTAGTTGAAATCATAGTTTAAAGCACCTTTCACCCACCCTAGCTCACATTACCTCCGCCTATTGTTCAAGTACTTGTTTTTCAGAAATATATTTTCTTTTTGTCAAAACAATTTTCTTCATTCCAAACACTAAAAATTTCAGTCAAAAGCCTAAATTTTGCATCTCACATGTTTAACAAACTAACTCTTTACAATATATATACACACTTAATCATATTAATAAGGGGCAGATTTAGTGCAAGCATTATGGATTCACGACTTCATATGAACTTGATAACTTTTTGTCCAAATTATGATATATTAGAATATATTTAGCTCGAAACTCAATATGTTGATCCAGCTATTTTATAAATTATTTTAAAATTATTATAGAATATCATAAACTCAATCTTGGATTTGCCCCTAACCATTTTTATCTCCTCTGCATGCAGGAAAAGTTGCTTTCAAAATTAGAGTTGGTATTTTAAAAAAAAAAAAAGTAAAGATGATAAAATAGTAACCTTTACTTTTTGGAAGAGTGAAAGATAAAGCTAGTGGGTTCCTTCGGGGAAATTTCATGGATTGAAGTGAAAAGGACATTCGATTGTTTATAATGAGAAAAAAAAAA-GAGAACAAGAAGGGATTTGATGAATCTTGGTGGGAACTTTTTTGCCTTCCATAGGACAGGCATTGTGATGATTGCCTTTTTTATAAAATGTTTATTCGTATAGAGTGTTTATATTAAATGAAGGTAACTATAAAAAGAAATATTCAATGCGTAATCATGATTGAGAGATAAATGTGTGTATGTATAGACATGTTATGTATTCTTGATTTGGTGCAAGTATTCGGTGTAGATATATATGTATCGTGATGTTTCTCTCCTTTTGTCATTATTAAGTACGGATGGGGATCATTGGGTCTAATTATTAGTTATGCGGAGATTATTATAGTTCAAACATTCTTTGGTCTTTATTTTTGCCCCTATTGCATATTTAAAGAAATATTGTGAGTTAAAGTACTCTTAACTAAGATTTAAATTTCTCAAGGTAGAACTTTAGATTCTACATAAGTTGTGTTTTAGTATATAATTTGCAAGGCATACATTTAGAGGCCTTCTTTTTGTCCCACAACCTCTTTGTAGGAATAAGCTAGGCCTCTTTAAGACATAATTTTGTGGGTATTGAAATTGAACTTATGTCTCTATTACCAAAAGTTATGTAAGAACGAGGTTATGTCTTACAAGACATAGCTTGTGGATTATGTCTAAATTTGAATTTATGCCTCTCTTGGTGTAAGTTAGGTAGGAACTAAGGACAACTTGTGTTATATTTGTGTTATATTATGATATGACATTCGTGCTTCGAAAGAACACCAAACCAATAAGATGGTTTTCTGGGCCTCATAGTTGAATTCAGCCCAACATTATAGCAAATAGGTCCGGCCCAATTAGAATTTATAAAGCAATGTTAGGACTCTAGACCTTATGGATTGAACCATTTGAACAGCCAAATCAAGAAGGTAAGGACTTGCAATAAAACACAACAATAGAGGAGTTTTAGTAGTTCAGTTGGTTGACTATCTAACTTTTCACTTAGTTGATTAAAAATGAAAAGAAAAAAAACAC</genome_strand>
        <mrna_strand>TGCAGCATAGCTCCCACTGTTGCATTTAAGCAACATCTCTCAAATCAAGAAAAATTAATGAAAAGATCAATAAAGAAAAATTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGTTGCTTTCCAAATTAGAGTTGGTATTTTAAAAAAAAATAAAGTAAAGATGATAAAATAGTACCCTTTACTTTTTGGAAGAGTGAAAGATAAAGCTAGTGGGTTCCTTCGGGGAAATTTCATGGATTGAAGTGAAAAGGACATTCGATTGTTTATAATGAGAAAAAAAAAATCAGAACAAGAAGGGATTTGATGAATCTTGGTGGGAACTTTTTTGCCTTCCATAGGACAGGCATTGTGATGATTGCCTTTTTTATAAAATGTTTATTCGTATAGAGTGTTTATATTAAATGAAGGTAACTATAAAAAGAAATATTCAATGCGTAATCATGATTGAGAGATAAATGTGTGTATGTATAGACATGTTATGTATTCTTGATTTGGTGCAAGTATTCGGTGTAGATAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542700" ref_strand="+" ref_description="SGN-E542700 [TUS-64-C5](-)">
      <seq>ctactaaagacctggtcgtggtgatgagcaagctccttggggaggctatcaagtagcacgacgacttttaccaatactcagtagggttgtctcgcggtaccctgatcccctcgtgactttcagggtagcaagtagcatacttcagtcagtgtatttggaaatattggcagagttagtctactttcttgataatcttacaatagtgaacttgtcaaaggatcagttcaatgttgctaggcaacatatctgggacctaaagttaagtggcattgaaataggctggcttgaaaaccgtttactgcatatcgatgaagtatttagcatggaaagtttactgcaacggcgacaagcactcacacgtagaatggaggagacatttaagcagctggatggggaacttggatgtatagacaaggagcttcatgaactatctctaaaggttggccctaattcccctatgagattgcaatctgtcttggagggtttgttgtagtttccagtgatgttatcctttgtatttgactacatgataaagagaaaaagccggacatagtccattatctttgggcggaggctcaaaatgatcgtatttctttcacacgagcaaccaatttgttagaaaatgacgactattgatgctccatgcaagagagatacgatcattttgatctcaagttcaaagaatatggactattttgggttttttctgtaatgataggaactcttacgattagaggtgaagtcgagtttttcagtttatggattcaggaccacatattaaatgaaatgattaacacaaatataaagtttgggacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="49185" stop="47768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48885" g_stop="48061" g_length="825"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="825" r_length="825" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E542700" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48885" e_stop="48061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGAAGGACCTGGTCGTGGTGATGAGCAAGTTCCTTGGGGAGGCTATCAAGTAGCACGACGAACTTTACCAATACTCAGTAGGGTTGTCTCGCGGTACCCTGATTCCCTCGTGAACTTCAGGGTAGCAAGTAGCATACTTCAGTCAGTGTATTTGGAAATATTGGCAGAGTTAGTCTACTTTCTTGATAATCTTACAATAGTGAACTTGTCAAAGGATCAGTTCAATGTTGCTAGGCAACATATCTGGGACCTAAAGTTAAGTGGCATTGAAATAGGCTGGCTTGAAAACCGTTTACTGCATATCGATGAAGTATTTAGCATGGAAAGTTTACTGCAACGGCGACAAGCACTCACACGTAGAATGGAGGAGACATTTAAGCAGCTGGATGGGGAACTTGGATGTATAGACAAGGAGCTTCATGAACTATCTCTAAAGGTTGGCCCTAATTCCCCTATGAGATTGCAATCTGTCTTGGAGGGTTTGTTGTAGTTTCCAGTGATGTTATCCTTTGTATTTGACTACATGATAAAGAGAAAAAGCCGGACATAGTCCATTATCTTTGGGCGGAGGCTCAAAATGATCGTATTTCTTTCACACGAGCAACCAATTTGTTAGAAAATGACGACTATTGATGCTCCATGCAAGAGAGATACGATCATTTTGATCTCAAGTTCAAAGAATATGGACTATTTTGGGTTTTTTCTGTAATGATAGGAACTCTTACGATTAGAGGTGAAGTCGAGTTTTTCAGTTTATGGATTCAGGACCACATATTAAATGAAATGATTAACACAAATATAAAGTTTGGGACAAAGTTAATG</genome_strand>
        <mrna_strand>CTACTAAAGACCTGGTCGTGGTGATGAGCAAGCTCCTTGGGGAGGCTATCAAGTAGCACGACGACTTTTACCAATACTCAGTAGGGTTGTCTCGCGGTACCCTGATCCCCTCGTGACTTTCAGGGTAGCAAGTAGCATACTTCAGTCAGTGTATTTGGAAATATTGGCAGAGTTAGTCTACTTTCTTGATAATCTTACAATAGTGAACTTGTCAAAGGATCAGTTCAATGTTGCTAGGCAACATATCTGGGACCTAAAGTTAAGTGGCATTGAAATAGGCTGGCTTGAAAACCGTTTACTGCATATCGATGAAGTATTTAGCATGGAAAGTTTACTGCAACGGCGACAAGCACTCACACGTAGAATGGAGGAGACATTTAAGCAGCTGGATGGGGAACTTGGATGTATAGACAAGGAGCTTCATGAACTATCTCTAAAGGTTGGCCCTAATTCCCCTATGAGATTGCAATCTGTCTTGGAGGGTTTGTTGTAGTTTCCAGTGATGTTATCCTTTGTATTTGACTACATGATAAAGAGAAAAAGCCGGACATAGTCCATTATCTTTGGGCGGAGGCTCAAAATGATCGTATTTCTTTCACACGAGCAACCAATTTGTTAGAAAATGACGACTATTGATGCTCCATGCAAGAGAGATACGATCATTTTGATCTCAAGTTCAAAGAATATGGACTATTTTGGGTTTTTTCTGTAATGATAGGAACTCTTACGATTAGAGGTGAAGTCGAGTTTTTCAGTTTATGGATTCAGGACCACATATTAAATGAAATGATTAACACAAATATAAAGTTTGGGACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542701" ref_strand="+" ref_description="SGN-E542701 [TUS-64-C5]">
      <seq>ctactaaggacctggtcgtggtgatgagcaagctccttggggaggctatcaagtagcacgacgaactttaccaatactcagtagggttgtctcgcggtaccctgattccctcgtgaacttcagggtagcaagtagcatacttcagtcagtgtatttggaaatattggcagagttagtctactttcttgataatcttacaatagtgaacttgtcaaaggatcagttcaatgttgctaggcaacatatctgggacctaaagttaagtggcattgaaataggctggcttgaaaaccgtttactgcatatcgatgaagtatttagcatggaaagtttactgcaacggcgacaagcactcacacgtagaatggaggagacatttaagcagctggatggggaacttggatgtatagacaaggagcttcatgaactatctctaaaggttggccctaattcccctatgagattgcaatctgtcttggagggtttgttgtagtttccagtgatgttatcctttgtatttgactacatgataaagagaaaaagccggacatagtccattatctttgggcggaggctcaaaatgatcgtatttctttcacacgagcaaccaatttgttagaaaatgacgactattgatgctccatgcaagagagatacgatcattttgatctcaagttcaagaatatggactattttgggttttttctgtaatgataggaactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="49185" stop="47861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48885" g_stop="48161" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E542701" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48885" e_stop="48161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGAAGGACCTGGTCGTGGTGATGAGCAAGTTCCTTGGGGAGGCTATCAAGTAGCACGACGAACTTTACCAATACTCAGTAGGGTTGTCTCGCGGTACCCTGATTCCCTCGTGAACTTCAGGGTAGCAAGTAGCATACTTCAGTCAGTGTATTTGGAAATATTGGCAGAGTTAGTCTACTTTCTTGATAATCTTACAATAGTGAACTTGTCAAAGGATCAGTTCAATGTTGCTAGGCAACATATCTGGGACCTAAAGTTAAGTGGCATTGAAATAGGCTGGCTTGAAAACCGTTTACTGCATATCGATGAAGTATTTAGCATGGAAAGTTTACTGCAACGGCGACAAGCACTCACACGTAGAATGGAGGAGACATTTAAGCAGCTGGATGGGGAACTTGGATGTATAGACAAGGAGCTTCATGAACTATCTCTAAAGGTTGGCCCTAATTCCCCTATGAGATTGCAATCTGTCTTGGAGGGTTTGTTGTAGTTTCCAGTGATGTTATCCTTTGTATTTGACTACATGATAAAGAGAAAAAGCCGGACATAGTCCATTATCTTTGGGCGGAGGCTCAAAATGATCGTATTTCTTTCACACGAGCAACCAATTTGTTAGAAAATGACGACTATTGATGCTCCATGCAAGAGAGATACGATCATTTTGATCTCAAGTTCAAAGAATATGGACTATTTTGGGTTTTTTCTGTAATGATAGGAACTCT</genome_strand>
        <mrna_strand>CTACTAAGGACCTGGTCGTGGTGATGAGCAAGCTCCTTGGGGAGGCTATCAAGTAGCACGACGAACTTTACCAATACTCAGTAGGGTTGTCTCGCGGTACCCTGATTCCCTCGTGAACTTCAGGGTAGCAAGTAGCATACTTCAGTCAGTGTATTTGGAAATATTGGCAGAGTTAGTCTACTTTCTTGATAATCTTACAATAGTGAACTTGTCAAAGGATCAGTTCAATGTTGCTAGGCAACATATCTGGGACCTAAAGTTAAGTGGCATTGAAATAGGCTGGCTTGAAAACCGTTTACTGCATATCGATGAAGTATTTAGCATGGAAAGTTTACTGCAACGGCGACAAGCACTCACACGTAGAATGGAGGAGACATTTAAGCAGCTGGATGGGGAACTTGGATGTATAGACAAGGAGCTTCATGAACTATCTCTAAAGGTTGGCCCTAATTCCCCTATGAGATTGCAATCTGTCTTGGAGGGTTTGTTGTAGTTTCCAGTGATGTTATCCTTTGTATTTGACTACATGATAAAGAGAAAAAGCCGGACATAGTCCATTATCTTTGGGCGGAGGCTCAAAATGATCGTATTTCTTTCACACGAGCAACCAATTTGTTAGAAAATGACGACTATTGATGCTCCATGCAAGAGAGATACGATCATTTTGATCTCAAGTTC-AAGAATATGGACTATTTTGGGTTTTTTCTGTAATGATAGGAACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301537" ref_strand="+" ref_description="SGN-E301537 [cLEW-23-K22]">
      <seq>tactaaggacctggtcgtggtgatgagcaagctccttggggaggctatcaagtagcacgacgaactttaccaatactcagtagggttgtctcgcggtaccctgattccctcgtgaacttcagggtagcaagtagcatacttcagtcagtgtatttggaaatattggcagagttagtctactttcttgataatcttacaatagtgaacttgtcaaaggatcagttcaatgttgctaggcaacatatctgggacctaaagttaagtggcattgaaataggctggcttgaaaaccgtttactgcatatcgatgaagtatttagcatggaaagtttactgcaacggcgacaagcactcacacgtagaatggaggagacatttaagcagctggatggggaacttggatgtatagacaaggagcttcatgaactatctctaaaggttggccctaattcccctatgagattgcaatctgtcttggagggtttgttgtagtttccagtgatgttatcctttgtatttgactacatgataaagagaaaaagccggacatagtccattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="49184" stop="48024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48884" g_stop="48324" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E301537" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48884" e_stop="48324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGAAGGACCTGGTCGTGGTGATGAGCAAGTTCCTTGGGGAGGCTATCAAGTAGCACGACGAACTTTACCAATACTCAGTAGGGTTGTCTCGCGGTACCCTGATTCCCTCGTGAACTTCAGGGTAGCAAGTAGCATACTTCAGTCAGTGTATTTGGAAATATTGGCAGAGTTAGTCTACTTTCTTGATAATCTTACAATAGTGAACTTGTCAAAGGATCAGTTCAATGTTGCTAGGCAACATATCTGGGACCTAAAGTTAAGTGGCATTGAAATAGGCTGGCTTGAAAACCGTTTACTGCATATCGATGAAGTATTTAGCATGGAAAGTTTACTGCAACGGCGACAAGCACTCACACGTAGAATGGAGGAGACATTTAAGCAGCTGGATGGGGAACTTGGATGTATAGACAAGGAGCTTCATGAACTATCTCTAAAGGTTGGCCCTAATTCCCCTATGAGATTGCAATCTGTCTTGGAGGGTTTGTTGTAGTTTCCAGTGATGTTATCCTTTGTATTTGACTACATGATAAAGAGAAAAAGCCGGACATAGTCCATTATC</genome_strand>
        <mrna_strand>TACTAAGGACCTGGTCGTGGTGATGAGCAAGCTCCTTGGGGAGGCTATCAAGTAGCACGACGAACTTTACCAATACTCAGTAGGGTTGTCTCGCGGTACCCTGATTCCCTCGTGAACTTCAGGGTAGCAAGTAGCATACTTCAGTCAGTGTATTTGGAAATATTGGCAGAGTTAGTCTACTTTCTTGATAATCTTACAATAGTGAACTTGTCAAAGGATCAGTTCAATGTTGCTAGGCAACATATCTGGGACCTAAAGTTAAGTGGCATTGAAATAGGCTGGCTTGAAAACCGTTTACTGCATATCGATGAAGTATTTAGCATGGAAAGTTTACTGCAACGGCGACAAGCACTCACACGTAGAATGGAGGAGACATTTAAGCAGCTGGATGGGGAACTTGGATGTATAGACAAGGAGCTTCATGAACTATCTCTAAAGGTTGGCCCTAATTCCCCTATGAGATTGCAATCTGTCTTGGAGGGTTTGTTGTAGTTTCCAGTGATGTTATCCTTTGTATTTGACTACATGATAAAGAGAAAAAGCCGGACATAGTCCATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484513" ref_strand="+" ref_description="SGN-E484513 [cSTE-13-L15]">
      <seq>gggttgtctcgcggtacccctgattcactcgtgaacttcagggttgcaagtagcatacttcagtcagtgtatttggaaatattggcagagttagtctactttctcgataatcttacaatagtgaacttgtcaaggatcagttcaatgttgctaggcaacatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="49102" stop="48338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48802" g_stop="48638" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E484513" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>165</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48802" e_stop="48638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTGTCTCGCGGTA-CCCTGATTCCCTCGTGAACTTCAGGGTAGCAAGTAGCATACTTCAGTCAGTGTATTTGGAAATATTGGCAGAGTTAGTCTACTTTCTTGATAATCTTACAATAGTGAACTTGTCAAAGGATCAGTTCAATGTTGCTAGGCAACATATCT</genome_strand>
        <mrna_strand>GGGTTGTCTCGCGGTACCCCTGATTCACTCGTGAACTTCAGGGTTGCAAGTAGCATACTTCAGTCAGTGTATTTGGAAATATTGGCAGAGTTAGTCTACTTTCTCGATAATCTTACAATAGTGAACTTGTC-AAGGATCAGTTCAATGTTGCTAGGCAACATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426936" ref_strand="+" ref_description="SGN-E426936 [STM-47-B5]">
      <seq>tgatcactgtaagcatccaagctagagatgaggacttgtatgagctattcaaggattttgactttccagattctacaaacgctagtctcgatactatagctttggatttggacagtgattggttcagatcgacgctacaagatttcgaggaatgtcttgaagagcaagaagagactattactcccagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="49955" stop="48690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49656" g_stop="49517" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49516" i_stop="49037" i_length="480">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49036" g_stop="48990" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="188" r_length="47" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E426936" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>187</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49656" e_stop="49517"/>
          <exon e_start="49036" e_stop="48990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGA-CACTGTAAGCACCCACACTAGAGATGAGGACTTGTATGAACTATTCAAGGATTTTGACTTTCCAGACTCTACAAACACTAGTCTCGATACTATAGCTTTGGATTTGGGCAGTGATTGGTTCAGATCAACGCTACAAGGTAATAGTTACTTCCTCCGTTTCAATTATGTGTTTTACTTTCCTTTTAGTCAGTTTAGAAAAAGACTACCACTTCTCTATATCTACTGAGTATGCAATTCCACCATTGATGACATTCACTTATAGGAATGGCATGACATCTAAAAGTACAAGATTCAAAGAGTACTTTTGGTATATTATACATACCGTTTGTTGAAACCCATAAGATCCATTAGTTTTCTTCACATTGTTAAACTTTGTCTCCACTCAAACTCTAAAAAATAAGAAAGGGGTGTATCATAAAATGACTATACCGCGAAGAATATTAACTCTAAGTTGTAATATTTTGGTCTGTCTATATGTAGGAGTCATGATTCCTCAATTTGGATAGTTTTACAAGGCTGCTGCTCCATTATTGAATAAAAGCCTAGCTGTAACCAGTTTATTTATGCTCCTTTATCTGAATTTGTCATTTTAAGAAAGCTAAAGATTGTCCTTGTTGATTTCGGGGAATGTCTTGAAGAGCAAGAAGAGACTGTTACTCCCAGT</genome_strand>
        <mrna_strand>TGATCACTGTAAGCATCCAAGCTAGAGATGAGGACTTGTATGAGCTATTCAAGGATTTTGACTTTCCAGATTCTACAAACGCTAGTCTCGATACTATAGCTTTGGATTTGGACAGTGATTGGTTCAGATCGACGCTACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGGAATGTCTTGAAGAGCAAGAAGAGACTATTACTCCCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332437" ref_strand="+" ref_description="SGN-E332437 [cTOD-17-D13]">
      <seq>aaagattgtctttagtggttccctttagcaagttgtatactttttttgtgctttgattatggttgatcaattgcggttttcacagcagaaatacctaaatcatatgccatttaaaggttcaagattctagctttatttgtttttatacaaaaaaaaggggacatttttcactcttgatttatagattaattgtttatgtactgtctttgctactgctttatgatttctttactattactgtattttcctttcttactgattttgatgtgcttcatttgatagttggaaacaacctctctaccttcataggggcaaggccgtgatgtgggattacacgggatatgttgttgacgttattgatttatagattgttttgttttttgggtgggtgatttgtcaggtgatgatgatctgtgtagggaaatatggaaggcctgttctggttcattgttggatgtttcaaaggctggggagagagtatactactttccaagacttcatgtggagcagctggagcaatcatccaaccaggagctgattgaaaaactacaattgtccaacttacctccaaagatcctttgtcgtgttcttcatattcgtcttctggttgaacatgagacggaagaagtttatgctgagaccatattaattccaaatcaagatcaaaatgagccaacagctgcggattttagtcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="54000" stop="51132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53700" g_stop="53191" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53190" i_stop="53005" i_length="186">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53004" g_stop="52909" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="606" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52908" i_stop="51604" i_length="1305">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51603" g_stop="51547" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="663" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51546" i_stop="51467" i_length="80">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.742" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51466" g_stop="51432" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="698" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E332437" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53700" e_stop="53191"/>
          <exon e_start="53004" e_stop="52909"/>
          <exon e_start="51603" e_stop="51547"/>
          <exon e_start="51466" e_stop="51432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTGTCTTTAGTGGTTCCCTTTAGCAAGTTGTATACTTTTTTTGTGCTTTGATTATGGTTGATCAATTGCGGTTTTCACAGCAGAAATACCTAAATCATATGCCATTTAAAGGTTCAAGATTCTAGCTTTATTTGTTTTTATACAAAAAAAAGGGGACATTTTTCACTCTTGATTTATAGATTAATTGTTTATGTACTGTCTTTGCTACTGCTTTATGATTTCTTTACTATTACTGTATTTTCCTTTCTTACTGATTTTGATGTGCTTCATTTGATAGTTGGAAACAACCTCTCTACCTTCATAGGGGCAAGGCCGTGATGTGGGATTACACGGGATATGTTGTTGACGTTATTGATTTATAGATTGTTTTGTTTTTTGGGTGGGTGATTTGTCAGGTGATGATGATCTGTGTAGGGAAATATGGAAGGCCTGTTCTGGTTCATTGTTGGATGTTTCAAAGGCTGGGGAGAGAGTATACTACTTTCCAAGACTTCATGTGGAGCAGGTTAACAATTTTAGGGATTTTTTTGGTAGTTTTTGAAATTATGGGTCCTATATTTATGGCTTTATGTTCCATGTGGTATGTTATTGTATGTTTATGAGTTAAAGAATACAGGTTCAGTTGAATTCAGTAAACTAGGCTACTAAGCTTGTGTTTTTTTCTTCCTAATGAATTTTTGGTTTTGGCCAGCTGGAGCAATCATCCAACCAGGAGCTGATTGAAAAACTACAATTGTCCAACTTACCTCCAAAGATCCTTTGTCGTGTTCTTCATATTCGTCTTCTGGTATGCGTGATAATTGATCATTTCAAATGTTTTTGAGATAGTTTTTACCTTTTTGTGGGAGTTGGTGTAGTAAGATTGATGGATCTTAAGGACTTTTGCCTATTATTCTTGGGATTGGTTAGGAATAAACAATCTCCTCCATGTTAGTGTCATTTAATTTTCTTTAGGAAATTCTTACATGAAATTGGTATTTGCACCCTATATATTCACAATACAGAAGGTCCAGTGGGAAGAAATGATTTCACCCAAGAAAAGATCTTGAAGTGCAAATCATTCTATGCTAGGCAATTAGAGCTTAAATGAAGCGATATGATGTGTGAGGATTCATAACGTGACCACTACTTGCTTGGGGATGAGGAATAGTTGTATTAGTAGTTTCAGTAGTAGTTATTTGTTGTTGTTGATGACTATTATTAGACAATTAGATCCCTTGTTTAGCTAGTTCCAATGTTTACGAGCTTGTTATTGTTGACAATTTAGATCTCATGGTTATTGCTAATCACAATTTGTTTTTTGTACTCATAGACCATGTGATTTGAGTACCAACATTTAGTGCTGTATTAGAAATTCCTCTTTTAGGTGTAGGTCCTTTTTGATAAAAGATTCACAATGAGGTAAGTGACCCATATTCACTAGCAGTTTGATAATTTGTGAATTCCATGCATCATGTGATTTTATCCATGCATATGGATCCTCCATGGTCCAACGTGCTCACCAACAAAGCCTATTCTTTAAGTTGATGAAGAAGTATGATTAGAGCAATGAGCCCCAATTGTTGGAATCAACTCTAGTGATTCGTGTTCTGATATTGGGTTTATGAGAATCTCATAGACTCAAGAAAACTTGACTGATTGAGGCACCCAAATGATCTGAAGTTAATGGTCCCTAATTGCTACATATTGTCCATTTTAGACGTGCTAATCTTATTAGGCATAATATATAAACAAACACACAAACTTAGCCCCAATTGGCAAGTAAGCACTCCAACTTTAGGTATGCATAGCTAGATACCTCAACTGGTCTCCATTGTGTCAATTCAATAACTCCAACTCACAAAAGGATCATCTAGACACCTCCAAAATTTATGTGTCACATAAGCGTTAGGTGTCCATGAGTTGGAGTATCTAGTTTTCGGTTGACACCAAGTTGAGGTGTCTAGATGTGCAAGCTCAAGGTTGGAATACGTATTTGCTAGTTGAGGCCAAGTTTGAGTGCTTTTATGTATTATACCATTTTATTCTGAAGCAGTATTTGTTTAAAGTAAGATTTGCGGAGCCATTTGTCTGCAATAGTTATTTTTGGTAGGTTGAACATGAGACGGAAGAGGTTTATGCTGAGACCATATTAATTCCAAATCAAGATGTAAGAACTCAATTTACTTGATTTGTAAAGATTATCCAGGATAAACTCTTGTTTACAGCCAAGAATACCACTCCTTGCAGCAAAATGAGCCAACAGCTGCGGATTTTAGTCCTCT</genome_strand>
        <mrna_strand>AAAGATTGTCTTTAGTGGTTCCCTTTAGCAAGTTGTATACTTTTTTTGTGCTTTGATTATGGTTGATCAATTGCGGTTTTCACAGCAGAAATACCTAAATCATATGCCATTTAAAGGTTCAAGATTCTAGCTTTATTTGTTTTTATACAAAAAAAAGGGGACATTTTTCACTCTTGATTTATAGATTAATTGTTTATGTACTGTCTTTGCTACTGCTTTATGATTTCTTTACTATTACTGTATTTTCCTTTCTTACTGATTTTGATGTGCTTCATTTGATAGTTGGAAACAACCTCTCTACCTTCATAGGGGCAAGGCCGTGATGTGGGATTACACGGGATATGTTGTTGACGTTATTGATTTATAGATTGTTTTGTTTTTTGGGTGGGTGATTTGTCAGGTGATGATGATCTGTGTAGGGAAATATGGAAGGCCTGTTCTGGTTCATTGTTGGATGTTTCAAAGGCTGGGGAGAGAGTATACTACTTTCCAAGACTTCATGTGGAGCAG..........................................................................................................................................................................................CTGGAGCAATCATCCAACCAGGAGCTGATTGAAAAACTACAATTGTCCAACTTACCTCCAAAGATCCTTTGTCGTGTTCTTCATATTCGTCTTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAACATGAGACGGAAGAAGTTTATGCTGAGACCATATTAATTCCAAATCAAGAT................................................................................CAAAATGAGCCAACAGCTGCGGATTTTAGTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292388" ref_strand="+" ref_description="SGN-E292388 [cLET-1-F9]">
      <seq>agaactagtctcgagttttttttttttttttttttttttttttttttttaattaccaaaaaaaaaagaggaagaagatttggcttctaatacattgatgagttggggaattccagctgtttgcccctttttccttttttttaccaagtccaaattctccgccgcgatgccggggtccgttggagctaccaactccatgtctcggttttccatgtcagctgattggatgcccgggcaaccccttccattttacctcgacgggtcagcccccggagattttggatttgatccactcggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccaccctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="62158" stop="68022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66989" g_stop="67260" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="375" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67722" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="535" r_length="160" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E292388" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66989" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATTTTTTTTCATTCTCATATCCAAACTTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTG</genome_strand>
        <mrna_strand>AGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATTTGGCTTCTAATACATTGATGAGTTGGGGAATTCCAGCTGTTTGCCCCTTTTTCCTTTTTTTTACCAAGTCCAAATTCTCCGCCGCGATGCCGGGGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTTTCCATGTCAGCTGATTGGATGCCCGGGCAACCCCTTCCATTTTACCTCGACGGGTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTCGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCACCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592013" ref_strand="+" ref_description="SGN-E592013 [45738]">
      <seq>ctttcttctctactcatatccaactttttttgtacatcttttaattaccaaaaaaaaaaaagaggaagaagagatggcttctaatacattgatgagttgtggtattccagctgtttgcccctcttttctctcttcttccaagtccaaattcgccgcggcgatgccggtgtccgtcggagctaccaactccatgtctcgattctccatgtcctccgattggatgcccgggcagccccgtccatcctacctcgatggctcagcccccggagattttggatttgacccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcctagtaccagaggcattgggcttaggcaattgggtcaaggcccaagaatgggcagccattcctggaggacaagctacatatttgggccagcctgttccatggggaacacttccaactattttggttattgaatttttagccatagcctttgtagagcaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggagcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggatttgtgtacaacaatcagacatatcccaggaaacaggaccattggagaacttggcaaactcacttggctgacccatggcacaacaacattggggatgttgttatccctaagaggctttttccctaattagaattggtaccatccatatatattagcaaaaacacttgtaaaactctcccatgtctaatagatttccaatggaatgaccttttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66694" stop="68491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66993" g_stop="67260" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="370" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="659" r_length="289" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="903" r_length="244" r_score="0.870"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E592013" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66993" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTTTCATTCTCATATCCAAACTTTTTTTTGTACATCTTTTAATTACC--AAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAG-CATAT-CCAGG-AACAGGACCATTGGAGAACTTGGC-AACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAA-AGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>CTTTCTTCTC-TACTCATATCC-AACT-TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAAAGAGGAAGAAGAGATGGCTTCTAATACATTGATGAGTTGTGGTATTCCAGCTGTTTGCCCCTCTTTTCTCTCTTCTTCCAAGTCCAAATTCGCCGCGGCGATGCCGGTGTCCGTCGGAGCTACCAACTCCATGTCTCGATTCTCCATGTCCTCCGATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGATGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGACCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCCTAGTACCAGAGGCATTGGGCTTAGGCAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGAGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCAACTATTTTGGTTATTGAATTTTTAGCCATAGCCTTTGTAGAGCACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGAGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGA-TTTGTGTACAACAATCAGACATATCCCAGGAAACAGGACCATTGGAGAACTTGGCAAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTGTTATCCCTAAGAGGCTTTTTCCCTAATTAGAAT-TGGTA-CCATC-CATA-TATATTAG-CAAAAACA-CTTGTAAAACTCTCCCATGT-CTAATAGATTTCCAATGGAATGACCTTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725880" ref_strand="+" ref_description="SGN-E725880 [LA08CE03]">
      <seq>attttttttcattctcatatccaaacttttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattggccgccgcgatgccggtgtccgttggagctaccaactccatgtctgggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatccaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66693" stop="68010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66993" g_stop="67260" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="371" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67710" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="519" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E725880" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66993" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTTTCATTCTCATATCCAAACTTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAG</genome_strand>
        <mrna_strand>ATTTTTTTTCATTCTCATATCCAAACTTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTGGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTGGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATCCAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295530" ref_strand="+" ref_description="SGN-E295530 [cLET-23-F3]">
      <seq>tttttttcattctcatatccaaacttttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66695" stop="68029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66995" g_stop="67260" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="369" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67729" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="536" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E295530" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66995" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCATTCTCATATCCAAACTTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACA</genome_strand>
        <mrna_strand>TTTTTTTCATTCTCATATCCAAACTTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744483" ref_strand="+" ref_description="SGN-E744483 [GI|170493]">
      <seq>attctcatatccaaacttctttttgtacatcttttaataccaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtctacgttggagctaccaacttcatgtctaggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgattcacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaagcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtatcctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagttaaggaaatcaagaatggtcgtcttgcattgttggcaattgtgggattttgtgtacaacaatcagcatatctaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttttgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66703" stop="68491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67003" g_stop="67260" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="358" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="647" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="894" r_length="247" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E744483" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67003" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCATATCCAAACTTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>ATTCTCATATCCAAACTTCTTTTTGTACATCTTTTAA-TACC--AAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTCTACGTTGGAGCTACCAACTTCATGTCTAGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATTCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAAGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTATCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTTAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCAATTGTGGGATTTTGTGTACAACAATCAGCATATCTAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572845" ref_strand="+" ref_description="SGN-E572845 [32063]">
      <seq>ctcatatccaactttttttgtacatcttttaattaccaaaaaaaaaaaagaggaagaagagatggcttctaatacattgatgagttgtggtattccagctgtttgcccctcttttctctcttcttccaagtccaaattcgccgcggcgatgccggtgtccgtcggagctaccaactccatgtctcgattctccatgtcctccgattggatgcccgggcagccccgtccatcctacctcgatggctcagcccccggagattttggatttgacccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcctagtaccagaggcattgggcttaggcaattgggtcaaggcccaagaatgggcagccattcctggaggacaagctacatatttgggccagcctgttccatggggaacacttccaactattttggttattgaatttttagccatagcctttgtagagcaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggagcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66706" stop="68298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67006" g_stop="67260" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="358" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="647" r_length="289" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="67998" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="703" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E572845" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67006" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="67998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATATCCAAACTTTTTTTTGTACATCTTTTAATTACC--AAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCA</genome_strand>
        <mrna_strand>CTCATATCC-AAC-TTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAAAGAGGAAGAAGAGATGGCTTCTAATACATTGATGAGTTGTGGTATTCCAGCTGTTTGCCCCTCTTTTCTCTCTTCTTCCAAGTCCAAATTCGCCGCGGCGATGCCGGTGTCCGTCGGAGCTACCAACTCCATGTCTCGATTCTCCATGTCCTCCGATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGATGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGACCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCCTAGTACCAGAGGCATTGGGCTTAGGCAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGAGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCAACTATTTTGGTTATTGAATTTTTAGCCATAGCCTTTGTAGAGCACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGAGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738098" ref_strand="+" ref_description="SGN-E738098 [LC12BE05]">
      <seq>atccaaacttttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcaaatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcaaaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttcccctattaaattgtactatttatcatatagtatattagccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66711" stop="68431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67011" g_stop="67260" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="353" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="642" r_length="289" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68131" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="831" r_length="189" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E738098" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67011" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAAACTTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAA</genome_strand>
        <mrna_strand>ATCCAAACTTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAAATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAAAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCCTATTAAATTGTACTATTTATCATATAGTATATTAGCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736904" ref_strand="+" ref_description="SGN-E736904 [LC07DA03]">
      <seq>atctaaacttttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcaaatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66711" stop="68412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67011" g_stop="67260" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="353" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="642" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68112" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="812" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E736904" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67011" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAAACTTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATC</genome_strand>
        <mrna_strand>ATCTAAACTTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAAATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294707" ref_strand="-" ref_description="SGN-E294707 [cLET-17-C19](-)">
      <seq>aaacttttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccacgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66715" stop="67998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67015" g_stop="67260" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="349" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67698" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="485" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E294707" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294707" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67015" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTA</genome_strand>
        <mrna_strand>AAACTTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCACGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294706" ref_strand="+" ref_description="SGN-E294706 [cLET-17-C19]">
      <seq>aaacttttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccacgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66715" stop="67998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67015" g_stop="67260" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="349" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67698" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="485" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E294706" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67015" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTA</genome_strand>
        <mrna_strand>AAACTTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCACGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292722" ref_strand="+" ref_description="SGN-E292722 [cLET-11-J5]">
      <seq>aaacttttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccacgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtgcctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66715" stop="67990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67015" g_stop="67260" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="349" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67690" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="477" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E292722" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67015" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTAT</genome_strand>
        <mrna_strand>AAACTTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCACGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTGCCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727551" ref_strand="+" ref_description="SGN-E727551 [LA15AB05]">
      <seq>aacttttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggaaaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcaaatgggctatgcttgctgttcccggaatcatagtaccaaaggcattgggcttaggtaattgggtcaaggcccaaaaatgggcagccattcctgggggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtaaaacaccaaaggagtatggaaaaagattcaaaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaaaaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66716" stop="68422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67016" g_stop="67260" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="348" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="637" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68122" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="817" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E727551" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67016" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATA</genome_strand>
        <mrna_strand>AACTTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAAAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAAATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAAAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAAAATGGGCAGCCATTCCTGGGGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAAAACACCAAAGGAGTATGGAAAAAGATTCAAAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAAAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340329" ref_strand="+" ref_description="SGN-E340329 [cTOF-2-I16]">
      <seq>ttttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggncactcacttggctgacccatggcacaacaacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66719" stop="68359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67019" g_stop="67260" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="345" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="634" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68059" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="751" r_length="117" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E340329" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67019" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTG</genome_strand>
        <mrna_strand>TTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGNCACTCACTTGGCTGACCCATGGCACAACAACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358044" ref_strand="+" ref_description="SGN-E358044 [cLHT-32-F19]">
      <seq>ttttttttgtacatcttttaattaccaaaaaaagaggagggggagatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctactaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66740" stop="68066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67019" g_stop="67260" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="342" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67766" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="546" r_length="204" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E358044" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67019" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAG</genome_strand>
        <mrna_strand>TTTTTTTTGTACATCTTTTAATTACCAAAAAAAGAGGAGG--G-GGAGATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACTAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296785" ref_strand="+" ref_description="SGN-E296785 [cLET-26-A22]">
      <seq>ttttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgctatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66719" stop="68029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67019" g_stop="67260" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="345" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67729" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="512" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E296785" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67019" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACA</genome_strand>
        <mrna_strand>TTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCTATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290962" ref_strand="+" ref_description="SGN-E290962 [cLET-8-K2]">
      <seq>ttttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66719" stop="68012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67019" g_stop="67260" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="345" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67712" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="495" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E290962" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67019" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCC</genome_strand>
        <mrna_strand>TTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296784" ref_strand="+" ref_description="SGN-E296784 [cLET-26-A20]">
      <seq>ttttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgctatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattctggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgngcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttnctactattttggctattgaatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66719" stop="68008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67019" g_stop="67260" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="345" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67708" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="491" r_length="146" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E296784" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67019" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCT</genome_strand>
        <mrna_strand>TTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCTATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTCTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGNGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTNCTACTATTTTGGCTATTGAATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291527" ref_strand="+" ref_description="SGN-E291527 [cLET-6-M11]">
      <seq>ttttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgctatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66719" stop="67979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67019" g_stop="67260" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="345" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67679" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="462" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E291527" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67019" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACA</genome_strand>
        <mrna_strand>TTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCTATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470108" ref_strand="+" ref_description="SGN-E470108 [cSTB-17-A21]">
      <seq>cgaggcctcgtgccgctttttttgtaccatcttttaattaccaaaaaaaaaaaagaggaagaagagatggcttctaatacattgatgagttgtggtattccagctgtttgcccctcttttctctcttcttccaagtccaaattccccgcggcgatgccggtgtccgtcggagctaccaactccatgtctcgattctccatgtcctccgattggatgcccgggcagccccgtccatcctacctcgatggctcagcccccggagattttggatttgacccacttggttttggagaagttccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66720" stop="67775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67019" g_stop="67260" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="260" r_length="245" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="363" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67571" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="372" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E470108" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67019" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTGTA-CATCTTTTAATTACCAA-AAAAAAAA-GAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATC</genome_strand>
        <mrna_strand>CTTTTTTTGTACCATCTTTTAATTACCAAAAAAAAAAAAGAGGAAGAAGAGATGGCTTCTAATACATTGATGAGTTGTGGTATTCCAGCTGTTTGCCCCTCTTTTCTCTCTTCTTCCAAGTCCAAATTCCCCGCGGCGATGCCGGTGTCCGTCGGAGCTACCAACTCCATGTCTCGATTCTCCATGTCCTCCGATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGATGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGACCCACTTGGTTTTGGAGAAGTTCCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737791" ref_strand="+" ref_description="SGN-E737791 [LC11BA02]">
      <seq>tttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66720" stop="68462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67020" g_stop="67260" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="344" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="633" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68162" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="853" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E737791" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67020" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAAT</genome_strand>
        <mrna_strand>TTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345392" ref_strand="+" ref_description="SGN-E345392 [cTOF-13-K8]">
      <seq>tttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttgggcactcacttggctgacccatggcacaaacacattgggggatgttattatccctaaaagcattttccctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66720" stop="68394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67020" g_stop="67260" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="344" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="633" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68094" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="786" r_length="153" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E345392" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67020" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATT-GGGGATGTTATTATCCCTAAAGGCATTTTCCCTAAT</genome_strand>
        <mrna_strand>TTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGGCACTCACTTGGCTGACCCATGGCACAAACACATTGGGGGATGTTATTATCCCTAAAAGCATTTTCCCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390594" ref_strand="+" ref_description="SGN-E390594 [TUS-47-A14]">
      <seq>tttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66720" stop="68147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67020" g_stop="67260" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="344" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67847" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="629" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E390594" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67020" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAG</genome_strand>
        <mrna_strand>TTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366657" ref_strand="+" ref_description="SGN-E366657 [cLPT-17-G12]">
      <seq>tttttttgtacatcttttaattaccaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctatcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctactaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggccttgggcttgggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66740" stop="68030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67020" g_stop="67260" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="341" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67730" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="509" r_length="168" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E366657" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67020" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACAC</genome_strand>
        <mrna_strand>TTTTTTTGTACATCTTTTAATTACC---AAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTATCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACTAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCCTTGGGCTTGGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283342" ref_strand="+" ref_description="SGN-E283342 [cLER-12-C19]">
      <seq>tttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66720" stop="68021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67020" g_stop="67260" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="344" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67721" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="503" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E283342" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67020" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTT</genome_strand>
        <mrna_strand>TTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282670" ref_strand="+" ref_description="SGN-E282670 [cLER-15-B11]">
      <seq>tttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66720" stop="67958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67020" g_stop="67260" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="344" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67658" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="440" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E282670" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67020" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGC</genome_strand>
        <mrna_strand>TTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465418" ref_strand="+" ref_description="SGN-E465418 [cPRO-21-E19]">
      <seq>tttttttgtacatcttttaattaccaaaaaaaaaaaagaggaagaagagatggcttctaatacattgatgagttgtggtattccagctgtttgcccctcttttctctcttcttccaagtccaaattcgccgcggcgatgccggtgtccgtcggagctaccaactccatgtctcgattctccatgtcctccgattggatgcccgggcagccccgtccatcctacctcgatggctcagcccccggagattttggatttgacccacttggttttggagaagttccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcctagtaccagaggcattgggcttaggcaattgggtcaaggcccaagaatgggcagccattcctggaggacaagctacatatttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66720" stop="67957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67020" g_stop="67260" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="346" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67657" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="441" r_length="95" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E465418" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67020" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGTACATCTTTTAATTACCAAAAAAAAA--AGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGG</genome_strand>
        <mrna_strand>TTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAAAGAGGAAGAAGAGATGGCTTCTAATACATTGATGAGTTGTGGTATTCCAGCTGTTTGCCCCTCTTTTCTCTCTTCTTCCAAGTCCAAATTCGCCGCGGCGATGCCGGTGTCCGTCGGAGCTACCAACTCCATGTCTCGATTCTCCATGTCCTCCGATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGATGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGACCCACTTGGTTTTGGAGAAGTTCCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCCTAGTACCAGAGGCATTGGGCTTAGGCAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGAGGACAAGCTACATATTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291370" ref_strand="+" ref_description="SGN-E291370 [cLET-2-L19]">
      <seq>tttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66720" stop="67924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67020" g_stop="67260" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="344" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67624" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="406" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E291370" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67020" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGC</genome_strand>
        <mrna_strand>TTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297741" ref_strand="+" ref_description="SGN-E297741 [cLET-28-P8]">
      <seq>ttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagatgtggaattccagctggttgcccctctttcctctcttctaccaagtccaaattcgccggcgcgatgccggggtccgttggagctaccaactccatgtgtcgggtctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcaacccccggagattttggatttgatccacttggtttaggagaagtacctgcacatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctggtcccggaatcatagcaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66721" stop="68135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67021" g_stop="67260" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="343" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67835" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="616" r_length="273" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E297741" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67021" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTC</genome_strand>
        <mrna_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGATGTGGAATTCCAGCTGGTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGGCGCGATGCCGGGGTCCGTTGGAGCTACCAACTCCATGTGTCGGGTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAACCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCACATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGGT.......................................................................................CCCGGAATCATAGCACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290926" ref_strand="+" ref_description="SGN-E290926 [cLET-8-K19]">
      <seq>ttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66721" stop="68130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67021" g_stop="67260" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="343" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67830" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="611" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E290926" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67021" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCA</genome_strand>
        <mrna_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248367" ref_strand="+" ref_description="SGN-E248367 [cLEG-1-G7]">
      <seq>ttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66721" stop="68129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67021" g_stop="67260" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="343" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67829" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="610" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E248367" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67021" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTC</genome_strand>
        <mrna_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297272" ref_strand="+" ref_description="SGN-E297272 [cLET-29-G2]">
      <seq>ttttttttacatcttttaattaccaaaaaaaaaacaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgacgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66721" stop="68112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67021" g_stop="67260" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="343" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67812" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="593" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E297272" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67021" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTG</genome_strand>
        <mrna_strand>TTTTTTTTACATCTTTTAATTACCAAAAAAAAAACAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGACGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286513" ref_strand="+" ref_description="SGN-E286513 [cLES-12-D21]">
      <seq>ttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66721" stop="68102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67021" g_stop="67260" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="343" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67802" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="583" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E286513" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67021" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCT</genome_strand>
        <mrna_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283505" ref_strand="+" ref_description="SGN-E283505 [cLER-12-I21]">
      <seq>ttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66721" stop="68087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67021" g_stop="67260" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="343" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67787" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="568" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E283505" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67021" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGAC</genome_strand>
        <mrna_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253832" ref_strand="+" ref_description="SGN-E253832 [cLEG-28-B15]">
      <seq>ttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggctgctaatagattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66721" stop="68072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67021" g_stop="67260" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="343" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67772" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="553" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E253832" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67021" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCT</genome_strand>
        <mrna_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTGCTAATAGATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288028" ref_strand="+" ref_description="SGN-E288028 [cLES-7-N9]">
      <seq>ttttttgttatcttttatggccaaacaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66731" stop="68020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67021" g_stop="67260" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="340" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67720" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="498" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E288028" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67021" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTT</genome_strand>
        <mrna_strand>TTTTTTGT-TATCTTTT-ATGGCC-AAACAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285467" ref_strand="+" ref_description="SGN-E285467 [cLES-10-I6]">
      <seq>ttttttgtacatcttttattgccaaaagaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66721" stop="67998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67021" g_stop="67260" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="341" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67698" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="477" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E285467" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67021" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTA</genome_strand>
        <mrna_strand>TTTTTTGTACATCTTTT-ATTGCC-AAAAGAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281128" ref_strand="+" ref_description="SGN-E281128 [cLER-7-D21]">
      <seq>ttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacactttctactatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66721" stop="67993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67021" g_stop="67260" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="343" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67693" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="474" r_length="131" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E281128" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67021" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTT</genome_strand>
        <mrna_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTTCTACTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294459" ref_strand="-" ref_description="SGN-E294459 [cLET-14-F12](-)">
      <seq>ttttttgtacatcttttaattaccaaaaaaaaagaggaagaagatatggcttgtaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccacgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66721" stop="67980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67021" g_stop="67260" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="342" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67680" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="460" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E294459" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294459" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67021" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACAC</genome_strand>
        <mrna_strand>TTTTTTGTACATCTTTTAATTACC-AAAAAAAAAGAGGAAGAAGATATGGCTTGTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCACGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294458" ref_strand="+" ref_description="SGN-E294458 [cLET-14-F12]">
      <seq>ttttttgtacatcttttaattaccaaaaaaaaagaggaagaagatatggcttgtaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccacgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66721" stop="67980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67021" g_stop="67260" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="342" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67680" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="460" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E294458" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67021" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACAC</genome_strand>
        <mrna_strand>TTTTTTGTACATCTTTTAATTACC-AAAAAAAAAGAGGAAGAAGATATGGCTTGTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCACGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281092" ref_strand="+" ref_description="SGN-E281092 [cLER-7-O15]">
      <seq>ttttttgtacatcttttaattaccacagaaaaaagaggaagaagatctggcttctaatacattgatgagttgtggaattccagctgcttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagatcatggatttgatccacttggtttaggagaagcacctgcagatttggaaagatacacagaatctgaacttattcattgcatatgggctatgcttgctgttccccgaatcatagtaccacaggcattgggcttatgtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66721" stop="67955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67021" g_stop="67260" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="343" r_length="103" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67655" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="436" r_length="93" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E281092" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67021" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTG</genome_strand>
        <mrna_strand>TTTTTTGTACATCTTTTAATTACCACAGAAAAAAGAGGAAGAAGATCTGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGCTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATCATGGATTTGATCCACTTGGTTTAGGAGAAGCACCTGCAGATTTGGAAAGATACACAGAATCTGAACTTATTCATTGCATATGGGCTATGCTTGCTGTT.......................................................................................CCCCGAATCATAGTACCACAGGCATTGGGCTTATGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279785" ref_strand="+" ref_description="SGN-E279785 [cLER-8-O17]">
      <seq>ttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66721" stop="67893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67021" g_stop="67260" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="343" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67593" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="374" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E279785" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67021" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCT</genome_strand>
        <mrna_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286454" ref_strand="+" ref_description="SGN-E286454 [cLES-12-M11]">
      <seq>ttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66721" stop="67892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67021" g_stop="67260" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="343" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67592" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="373" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E286454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67021" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGC</genome_strand>
        <mrna_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283243" ref_strand="+" ref_description="SGN-E283243 [cLER-17-N24]">
      <seq>ttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66721" stop="67775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67021" g_stop="67260" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="343" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67578" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="359" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E283243" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67021" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTAC</genome_strand>
        <mrna_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296856" ref_strand="+" ref_description="SGN-E296856 [cLET-26-H14]">
      <seq>ttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66721" stop="67775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67021" g_stop="67260" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="343" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67576" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="357" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E296856" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67021" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGT</genome_strand>
        <mrna_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296992" ref_strand="+" ref_description="SGN-E296992 [cLET-26-L6]">
      <seq>ttttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacgggtcagcccccggagattttggatttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66721" stop="67689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67021" g_stop="67260" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67389" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="257" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E296992" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67021" e_stop="67260"/>
          <exon e_start="67373" e_stop="67389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATC</genome_strand>
        <mrna_strand>TTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGGTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328295" ref_strand="+" ref_description="SGN-E328295 [cTOC-21-L12]">
      <seq>ttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66723" stop="68263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67023" g_stop="67260" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="341" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="630" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="67963" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="651" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E328295" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67023" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="67963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCAT</genome_strand>
        <mrna_strand>TTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727002" ref_strand="+" ref_description="SGN-E727002 [LA13BG08]">
      <seq>ttttgcacctctttataattaccaaaaaaaaaagaggaggaatatatggcttcgaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattccccgccgcgatgccggtgcccgttggagctaccaactccatgtctcggttctccatgtcaactgattggatgccagggcagccccgtccatcttacctcgacggtatcatcccccggaaattttaggatttgatcacacttggtttaggagaagaacctgcaattttggaaagatacaaagaacctgaacttattcattgcaaatgggctatgcttgctgttacccggaaatcatattaccaaaggcattgagcttaggtaattgggtcaaggcccaaaaatgggcagccattcctggggaacaacctacatatttgggccagcctgttccatggggaacacttcctactatttaggctattaaatttcaacccatagcttttgtagaacaccacaggagtatggaaaaagattcaaaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaaaaccctgctaagtttgaagaactcaaagacaaggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66723" stop="68143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67023" g_stop="67260" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="345" r_length="105" r_score="0.913"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67843" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="628" r_length="283" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E727002" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67023" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTACATCTTT-TAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGG-CTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTT-GGATTTGATC-CACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAG-CCCGG-AATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAAT</genome_strand>
        <mrna_strand>TTTTGCACCTCTTTATAATTACCAAAAAAAAAAGAGGAGGAATATATGGCTTCGAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCCCCGCCGCGATGCCGGTGCCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAACTGATTGGATGCCAGGGCAGCCCCGTCCATCTTACCTCGACGGTATCATCCCCCGG................................................................................................................AAATTTTAGGATTTGATCACACTTGGTTTAGGAGAAGAACCTGCAATTTTGGAAAGATACAAAGAACCTGAACTTATTCATTGCAAATGGGCTATGCTTGCTGTT.......................................................................................ACCCGGAAATCATATTACCAAAGGCATTGAGCTTAGGTAATTGGGTCAAGGCCCAAAAATGGGCAGCCATTCCTGGGGAACAACCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTAGGCTATTAAATTTCAACCCATAGCTTTTGTAGAACACCACAGGAGTATGGAAAAAGATTCAAAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAAACCCTGCTAAGTTTGAAGAACTCAAAGACAAGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283654" ref_strand="+" ref_description="SGN-E283654 [cLES-1-F23]">
      <seq>ttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66723" stop="68143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67023" g_stop="67260" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="341" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67583" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="362" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67584" i_stop="67787" i_length="204">
            <donor d_prob="0.702" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67788" g_stop="67843" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="418" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E283654" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67023" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67583"/>
          <exon e_start="67788" e_stop="67843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAAT</genome_strand>
        <mrna_strand>TTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAG............................................................................................................................................................................................................GCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727066" ref_strand="+" ref_description="SGN-E727066 [LA13CE08]">
      <seq>ttttgtaccccttttaattaccaaaaaaaaaagaggaagaagatatggctcctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttcaaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcaacggttcaacccccggaaattttggatttgatccacttggtttaggaaaagtacctgcaaatttggaaagatacaaaaaatctgaacttattcattgcaaatgggctatgcttgttgttcccggaatcatagtaccaaaggcattgggcttaggtaattgggtcaaggcccaaaaatgggcagccattcctgggggacaagctacatatttgggccagcctgttccatggggaacacttcctacaattttggctattgaatttcaagccatagcttttgtaaaacaccaaaggagtatggaaaaaaattcaaaaaaaaagaattacccggggggggcttttgacccattgggctactctaaaaaccctgctaaatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66723" stop="68122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67023" g_stop="67260" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="341" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67822" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="601" r_length="260" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E727066" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67023" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGA</genome_strand>
        <mrna_strand>TTTTGTACCCCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTCCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCAACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCAACGGTTCAACCCCCGG................................................................................................................AAATTTTGGATTTGATCCACTTGGTTTAGGAAAAGTACCTGCAAATTTGGAAAGATACAAAAAATCTGAACTTATTCATTGCAAATGGGCTATGCTTGTTGTT.......................................................................................CCCGGAATCATAGTACCAAAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAAAATGGGCAGCCATTCCTGGGGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACAATTTTGGCTATTGAATTTCAAGCCATAGCTTTTGTAAAACACCAAAGGAGTATGGAAAAAAATTCAAAAAAAAAGAATTACCCGGGGGGGGCTTTTGACCCATTGGGCTACTCTAAAAACCCTGCTAAATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284014" ref_strand="+" ref_description="SGN-E284014 [cLER-13-C3]">
      <seq>ttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66723" stop="68102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67023" g_stop="67260" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="341" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67802" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="581" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E284014" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67023" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCT</genome_strand>
        <mrna_strand>TTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288995" ref_strand="+" ref_description="SGN-E288995 [cLES-17-J23]">
      <seq>ttttgtacatcttttaattaccaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66723" stop="68083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67023" g_stop="67260" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="339" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67783" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="560" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E288995" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67023" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTT</genome_strand>
        <mrna_strand>TTTTGTACATCTTTTAATTACC--AAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278907" ref_strand="+" ref_description="SGN-E278907 [cLER-2-M3]">
      <seq>ttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66723" stop="68048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67023" g_stop="67260" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="341" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67748" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="527" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E278907" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67023" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAA</genome_strand>
        <mrna_strand>TTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295255" ref_strand="+" ref_description="SGN-E295255 [cLET-20-M16]">
      <seq>ttttgtacatcttttaattacttaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctaggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggccagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagcccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66723" stop="68014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67023" g_stop="67260" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="341" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67710" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="490" r_length="149" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E295255" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67023" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGG-CAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAG</genome_strand>
        <mrna_strand>TTTTGTACATCTTTTAATTACTTAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTAGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277375" ref_strand="+" ref_description="SGN-E277375 [cLER-3-G8]">
      <seq>ttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66723" stop="67992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67023" g_stop="67260" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="341" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67692" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="471" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E277375" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67023" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTT</genome_strand>
        <mrna_strand>TTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278948" ref_strand="+" ref_description="SGN-E278948 [cLER-2-M18]">
      <seq>ttttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgcttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtacatcttacctcgacggctcaccccccggagattttggatttgatccacttggtttaggagaagtacctgcacatttggaaagatacaaagcatctgaacttattcattgcatatgggctatgcttgctgttcccggaatcatagtaccacaggcattgtgcttaggtaattgggtcacggcccaagaatgggcagccattcctggcggacaagctacatatttgggccagcctgtttcatggggaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66723" stop="67980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67023" g_stop="67260" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="341" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67680" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="459" r_length="118" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E278948" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67023" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACAC</genome_strand>
        <mrna_strand>TTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGCTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTACATCTTACCTCGACGGCTCACCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCACATTTGGAAAGATACAAAGCATCTGAACTTATTCATTGCATATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCACAGGCATTGTGCTTAGGTAATTGGGTCACGGCCCAAGAATGGGCAGCCATTCCTGGCGGACAAGCTACATATTTGGGCCAGCCTGTTTCATGGGGAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292641" ref_strand="+" ref_description="SGN-E292641 [cLET-11-M19]">
      <seq>ttgtacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgtttcatggggaacacttcctactattttggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66725" stop="67998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67025" g_stop="67260" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="339" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67698" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="475" r_length="136" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E292641" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67025" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTA</genome_strand>
        <mrna_strand>TTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTTCATGGGGAACACTTCCTACTATTTTGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340825" ref_strand="+" ref_description="SGN-E340825 [cTOF-5-H21]">
      <seq>tacatcttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66728" stop="68356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67028" g_stop="67260" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="336" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="625" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68052" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="735" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E340825" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67028" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAAC</genome_strand>
        <mrna_strand>TACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733215" ref_strand="+" ref_description="SGN-E733215 [LB04BB07]">
      <seq>cgcttttaattaccaaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggaaaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcaaatgggctatgcttgctgttcccggaatcatagtaccaaaggcattgggcttaggtaattgggtcaaggcccaaaaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcaaaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatgaaatggactttctgtgttnnnnaanaanannaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66733" stop="68491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67031" g_stop="67260" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="334" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="623" r_length="289" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="870" r_length="247" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E733215" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67031" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTTAATTACC-AAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>CGCTTTTAATTACCAAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAAAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAAATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAAAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAAAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAAAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGAAATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727087" ref_strand="+" ref_description="SGN-E727087 [LA13CG08]">
      <seq>cttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcaaatgggctatgcttgctgttcccggaatcatagtaccaaaggcattgggcttaggtaattgggtcaaggcccaaaaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcaaaaaagaaaaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaaaaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaataaaattgtactatttatcatatagaatataagcccaaaaaccctttgtaaaactctcccatgtactaataaatttctaatgaaatggactttctgggtaaaaaaaaaaaaaaaaaaaaaatttcggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66733" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67033" g_stop="67260" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="331" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="620" r_length="289" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="868" r_length="248" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="871" polyA_stop="893"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E727087" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67033" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAG-CCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAAATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAAAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAAAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAAAAAAGAAAAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAAAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATAAAATTGTACTATTTATCATATAGAATATAAGCCCAAAAACCCTTTGTAAAACTCTCCCATGTACTAATAAATTTCTAATGAAATGGACTTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726595" ref_strand="+" ref_description="SGN-E726595 [LA12BB05]">
      <seq>cttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcaaatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaaaaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66733" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67033" g_stop="67260" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="331" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="620" r_length="289" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="867" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="870" polyA_stop="883"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E726595" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67033" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAAATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAAAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732154" ref_strand="+" ref_description="SGN-E732154 [LB01BF11]">
      <seq>cttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatgggatggactttctgtgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66733" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67033" g_stop="67260" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="331" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="620" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="867" r_length="247" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="870" polyA_stop="881"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E732154" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67033" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGGATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733229" ref_strand="+" ref_description="SGN-E733229 [LB04BC09]">
      <seq>cttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagcacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66733" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67033" g_stop="67260" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="331" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="620" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="867" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="869" polyA_stop="881"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E733229" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67033" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGCACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740504" ref_strand="+" ref_description="SGN-E740504 [LC21CG11]">
      <seq>cttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66733" stop="68460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67033" g_stop="67260" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="331" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="620" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68160" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="838" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E740504" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67033" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTA</genome_strand>
        <mrna_strand>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735622" ref_strand="+" ref_description="SGN-E735622 [LC02BD05]">
      <seq>cttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccaaaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcaccatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66733" stop="68422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67033" g_stop="67260" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="331" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="620" r_length="289" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68122" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="800" r_length="180" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E735622" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67033" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATA</genome_strand>
        <mrna_strand>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAAAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCACCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740394" ref_strand="+" ref_description="SGN-E740394 [LC21AH12]">
      <seq>cttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcaaatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66733" stop="68422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67033" g_stop="67260" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="331" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="620" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68122" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="800" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E740394" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67033" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATA</genome_strand>
        <mrna_strand>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAAATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731334" ref_strand="+" ref_description="SGN-E731334 [LA26DC09]">
      <seq>cttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggaaaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcaaatgggctatgcttgctgttcccggaatcatagtaccaaaggcattgggcttaggtaattgggtcaaggcccaaaaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtaaaacaccaaaggagtatggaaaaagattcaaaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaaaaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66733" stop="68418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67033" g_stop="67260" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="331" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="620" r_length="289" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68118" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="796" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E731334" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67033" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAG</genome_strand>
        <mrna_strand>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAAAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAAATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAAAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAAAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAAAACACCAAAGGAGTATGGAAAAAGATTCAAAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAAAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731459" ref_strand="+" ref_description="SGN-E731459 [LA27AG08]">
      <seq>cttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatcccctaaggcattttccctaattaaattgtactatttatcatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66733" stop="68417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67033" g_stop="67260" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="331" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="620" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68117" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="795" r_length="175" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E731459" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67033" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATA</genome_strand>
        <mrna_strand>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCCTAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728074" ref_strand="+" ref_description="SGN-E728074 [LA16CE06]">
      <seq>cttttatttaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcaaaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcacctcacttggctgacccatggcacaacaacattgggggatgtattatccctaaaggcattttccctaattaaatggtactatttatcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66733" stop="68416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67033" g_stop="67260" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="331" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="620" r_length="289" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68116" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="794" r_length="174" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E728074" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67033" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATAT</genome_strand>
        <mrna_strand>CTTTTATTTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAAAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCACCTCACTTGGCTGACCCATGGCACAACAACATTGGGGGATGTATTATCCCTAAAGGCATTTTCCCTAATTAAATGGTACTATTTATCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727934" ref_strand="+" ref_description="SGN-E727934 [LA16AG06]">
      <seq>cttctttttaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccgggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66733" stop="68373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67033" g_stop="67260" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="331" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="620" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68073" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="751" r_length="131" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E727934" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67033" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATC</genome_strand>
        <mrna_strand>CTTCTTTTTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCGGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727236" ref_strand="+" ref_description="SGN-E727236 [LA14AE05]">
      <seq>cttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccgggtaagtagtactacttccttcgtttcattttatgtgatatgatgtatgtatgatctcatacgatatttaagttgttagtatattaaagttggataacttaatataaatgcagagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcaaatgggctatgcttgctgttgtaagcttctttttccttaccataacatatatacgttatatattttgaacattcttaacgaaatttgtttcttcgcaatttttgtagcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggttaaaatattaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66733" stop="68166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67033" g_stop="67866" g_length="834"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="834" r_length="834" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E727236" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67033" e_stop="67866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACT</genome_strand>
        <mrna_strand>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAAATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAAAATATTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470701" ref_strand="+" ref_description="SGN-E470701 [cSTB-20-O1]">
      <seq>cttttaattaccaaaaaaaaaaaagaggaagaagagatggcttctaatacattgatgagttgtggtattccagctgtttgcccctcttttctctcttcttccaagtccaaattcgccgcggcgatgccggtgtccgtcggagctaccaactccatgtctcgattctccatgtcctccgattggatgcccgggcagccccgtccatcctacctcgatggctcagcccccggagattttggatttgacccacttggttttggagaagttccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcctagtaccagaggcattgggcttaggcaattgggtcaaggcccaagaatgggcagccattcctggaggacaagctacatatttgggccagcctgttccatggggaacacttccaactattttggttattgaatttttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66733" stop="68010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67033" g_stop="67260" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="333" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67710" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="481" r_length="148" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E470701" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67033" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAATTACCAAAAA--AAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAG</genome_strand>
        <mrna_strand>CTTTTAATTACCAAAAAAAAAAAAGAGGAAGAAGAGATGGCTTCTAATACATTGATGAGTTGTGGTATTCCAGCTGTTTGCCCCTCTTTTCTCTCTTCTTCCAAGTCCAAATTCGCCGCGGCGATGCCGGTGTCCGTCGGAGCTACCAACTCCATGTCTCGATTCTCCATGTCCTCCGATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGATGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGACCCACTTGGTTTTGGAGAAGTTCCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCCTAGTACCAGAGGCATTGGGCTTAGGCAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGAGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCAACTATTTTGGTTATTGAATTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472310" ref_strand="+" ref_description="SGN-E472310 [cSTB-28-E4]">
      <seq>cttttaattaccaaaaaaaaaaaagaggaagaagagatggcttctaatacattgatgagttgtggtattccagctgtttgcccctcttttctctcttcttccaagtccaaattcgccgcggcgatgccggtgtccgtcggagctaccaactccatgtctcgattctccatgtcctccgattggatgcccgggcagccccgtccatcctacctcgatggctcagcccccggagattttggatttgacccacttggttttggagaagttccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcctagtaccagaggcattgggcttaggcaattgggtcaaggcccaagaatgggcagccattcctggaggacaagctacatatttgggccagcctgttccatggggaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66733" stop="67980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67033" g_stop="67260" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="333" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67680" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="451" r_length="118" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E472310" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67033" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAATTACCAAAAA--AAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACAC</genome_strand>
        <mrna_strand>CTTTTAATTACCAAAAAAAAAAAAGAGGAAGAAGAGATGGCTTCTAATACATTGATGAGTTGTGGTATTCCAGCTGTTTGCCCCTCTTTTCTCTCTTCTTCCAAGTCCAAATTCGCCGCGGCGATGCCGGTGTCCGTCGGAGCTACCAACTCCATGTCTCGATTCTCCATGTCCTCCGATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGATGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGACCCACTTGGTTTTGGAGAAGTTCCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCCTAGTACCAGAGGCATTGGGCTTAGGCAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGAGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729628" ref_strand="+" ref_description="SGN-E729628 [LA21CE05]">
      <seq>ttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccaaaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66734" stop="68496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67034" g_stop="67260" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="330" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="619" r_length="289" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68196" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="873" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E729628" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67034" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCT</genome_strand>
        <mrna_strand>TTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAAAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730062" ref_strand="+" ref_description="SGN-E730062 [LA22DG07]">
      <seq>ttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaaaaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcaaaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66734" stop="68460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67034" g_stop="67260" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="330" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="619" r_length="289" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68160" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="837" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E730062" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67034" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTA</genome_strand>
        <mrna_strand>TTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAAAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAAAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739980" ref_strand="+" ref_description="SGN-E739980 [LC19CD07]">
      <seq>ttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcaaatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaaaaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66734" stop="68379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67034" g_stop="67260" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="330" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="619" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68079" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="756" r_length="137" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E739980" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67034" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAA</genome_strand>
        <mrna_strand>TTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAAATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAAAAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346847" ref_strand="+" ref_description="SGN-E346847 [cTOF-32-P13]">
      <seq>ttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66734" stop="68357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67034" g_stop="67260" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="330" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="619" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68057" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="734" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E346847" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67034" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACAT</genome_strand>
        <mrna_strand>TTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344648" ref_strand="+" ref_description="SGN-E344648 [cTOF-14-J17]">
      <seq>ttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66734" stop="68354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67034" g_stop="67260" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="330" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="619" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68054" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="731" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E344648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67034" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAA</genome_strand>
        <mrna_strand>TTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344377" ref_strand="+" ref_description="SGN-E344377 [cTOF-16-L20]">
      <seq>ttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66734" stop="68345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67034" g_stop="67260" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="330" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="619" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68045" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="722" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E344377" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67034" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATG</genome_strand>
        <mrna_strand>TTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344373" ref_strand="+" ref_description="SGN-E344373 [cTOF-16-J8]">
      <seq>ttttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66734" stop="68292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67034" g_stop="67260" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="330" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="619" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="67992" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="669" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E344373" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67034" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="67992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCA</genome_strand>
        <mrna_strand>TTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296570" ref_strand="+" ref_description="SGN-E296570 [cLET-39-C11]">
      <seq>tttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66735" stop="68134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67035" g_stop="67260" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="329" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67834" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="601" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E296570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67035" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGT</genome_strand>
        <mrna_strand>TTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296395" ref_strand="+" ref_description="SGN-E296395 [cLET-19-P11]">
      <seq>tttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctgttggggcttttgacccattgggctactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66735" stop="68101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67035" g_stop="67260" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="329" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67801" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="568" r_length="239" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E296395" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67035" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTC</genome_strand>
        <mrna_strand>TTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGTTGGGGCTTTTGACCCATTGGGCTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282274" ref_strand="+" ref_description="SGN-E282274 [cLES-4-B10]">
      <seq>tttaattaccaaaaaacaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgccaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttactactattttggctattgaatttctagccatagcttttgtagaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66735" stop="68029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67035" g_stop="67260" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="329" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67729" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="496" r_length="167" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E282274" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67035" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACA</genome_strand>
        <mrna_strand>TTTAATTACCAAAAAACAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCCAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTACTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291147" ref_strand="+" ref_description="SGN-E291147 [cLET-8-B20]">
      <seq>tttaattaccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66735" stop="67954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67035" g_stop="67260" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="329" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67654" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="421" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E291147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67035" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTT</genome_strand>
        <mrna_strand>TTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279204" ref_strand="-" ref_description="SGN-E279204 [cLEL-4-P16](-)">
      <seq>gcacgagaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66742" stop="67775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67040" g_stop="67260" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="324" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E279204" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279204" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67040" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT</genome_strand>
        <mrna_strand>GCACGAGAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734246" ref_strand="+" ref_description="SGN-E734246 [LB12AF09]">
      <seq>accaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66742" stop="68447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67042" g_stop="67260" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="322" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="611" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68147" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="816" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E734246" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67042" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACT</genome_strand>
        <mrna_strand>ACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725652" ref_strand="+" ref_description="SGN-E725652 [LA04BH10]">
      <seq>ccaaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66743" stop="68010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67043" g_stop="67260" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="321" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67710" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="469" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E725652" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67043" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAG</genome_strand>
        <mrna_strand>CCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283299" ref_strand="+" ref_description="SGN-E283299 [cLER-12-F15]">
      <seq>caaaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66744" stop="68072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67044" g_stop="67260" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="320" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67772" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="530" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E283299" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67044" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCT</genome_strand>
        <mrna_strand>CAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282272" ref_strand="+" ref_description="SGN-E282272 [cLES-4-O4]">
      <seq>caaaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66746" stop="68086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67045" g_stop="67260" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="319" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67786" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="543" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E282272" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67045" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGA</genome_strand>
        <mrna_strand>CAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725547" ref_strand="+" ref_description="SGN-E725547 [LA04AA07]">
      <seq>aaaaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatgggaaaagattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66747" stop="68053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67047" g_stop="67260" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="317" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67753" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="508" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E725547" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67047" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTC</genome_strand>
        <mrna_strand>AAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGGAAAAGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288833" ref_strand="+" ref_description="SGN-E288833 [cLES-17-J15]">
      <seq>aaaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66749" stop="68099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67049" g_stop="67260" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="315" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67799" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="552" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E288833" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67049" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTAC</genome_strand>
        <mrna_strand>AAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288000" ref_strand="+" ref_description="SGN-E288000 [cLES-7-O2]">
      <seq>aaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66750" stop="68132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67050" g_stop="67260" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="314" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67832" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="584" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E288000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67050" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAA</genome_strand>
        <mrna_strand>AAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290735" ref_strand="+" ref_description="SGN-E290735 [cLET-10-D13]">
      <seq>aaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66750" stop="68102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67050" g_stop="67260" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="314" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67802" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="554" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E290735" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67050" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCT</genome_strand>
        <mrna_strand>AAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289363" ref_strand="+" ref_description="SGN-E289363 [cLES-18-P2]">
      <seq>aaaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttgctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66750" stop="68028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67050" g_stop="67260" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="314" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67728" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="480" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E289363" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67050" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAAC</genome_strand>
        <mrna_strand>AAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTGCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283729" ref_strand="+" ref_description="SGN-E283729 [cLES-1-G7]">
      <seq>aaaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatgcacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66751" stop="67775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67051" g_stop="67260" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="313" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67570" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="321" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E283729" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67051" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAAT</genome_strand>
        <mrna_strand>AAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATGCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286884" ref_strand="+" ref_description="SGN-E286884 [cLES-14-H22]">
      <seq>aaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66752" stop="68143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67052" g_stop="67260" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="312" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67843" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="593" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E286884" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67052" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAAT</genome_strand>
        <mrna_strand>AAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282195" ref_strand="+" ref_description="SGN-E282195 [cLES-4-P6]">
      <seq>aaagaggaagaagatatggcttctaatacattgatgagttgtggaattccagctgggcgcccctctttcctctcttctaccaaggccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggatctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattctggatttgatccacttggtttaggagaagtacctgccaacttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66752" stop="67771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67052" g_stop="67260" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67471" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="308" r_length="99" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E282195" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67052" e_stop="67260"/>
          <exon e_start="67373" e_stop="67471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGC</genome_strand>
        <mrna_strand>AAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGGGCGCCCCTCTTTCCTCTCTTCTACCAAGGCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGATCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTCTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCCAACTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250707" ref_strand="+" ref_description="SGN-E250707 [cLEG-7-O3]">
      <seq>aaaaaataaaagatggcttctaacacattgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttatgtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67055" g_stop="67260" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.830"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="309" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67705" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="452" r_length="143" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E250707" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67055" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATT</genome_strand>
        <mrna_strand>AAAAAATAAAAGATGGCTTCTAACACATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTATGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738442" ref_strand="+" ref_description="SGN-E738442 [LC13CF11]">
      <seq>caataagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66759" stop="68490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67058" g_stop="67260" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="306" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="595" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="842" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E738442" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67058" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>CAATAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297176" ref_strand="+" ref_description="SGN-E297176 [cLET-29-I10]">
      <seq>aagatatggcttctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66762" stop="68153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67062" g_stop="67260" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="302" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="591" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="67950" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="599" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E297176" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67062" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="67950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTT</genome_strand>
        <mrna_strand>AAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733287" ref_strand="+" ref_description="SGN-E733287 [LB04BH07]">
      <seq>cgtttattctctactcatctccaaatttttgttaaattaacctaaaaaataaaagatggcttctaacacattgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattagagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattatactatttatcatatagtatattagccaaaaaaaacaccttgtaaaactctcccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67065" g_stop="67260" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="249" r_length="196" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="352" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="641" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68155" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="857" r_length="216" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E733287" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67065" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCC---AAAAACACCTTGTAAAACTCTCCCATG</genome_strand>
        <mrna_strand>AGATGGCTTCTAACACATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTAGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTATACTATTTATCATATAGTATATTAGCCAAAAAAAACACCTTGTAAAACTCTCCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740558" ref_strand="+" ref_description="SGN-E740558 [LC21DG11]">
      <seq>catctccaaatttttgttaaattaacctaaaaaataaaagatggcttctaacacattgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattagagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattatactatttatcatatagtatattagccaaaaaaaacaccttgtaaaactctcccatattgtactcatatagtcttgtaatgaaatggactctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67065" g_stop="67260" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="234" r_length="196" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="337" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="626" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68154" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="841" r_length="215" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E740558" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67065" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCC---AAAAACACCTTGTAAAACTCTCCCAT</genome_strand>
        <mrna_strand>AGATGGCTTCTAACACATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTAGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTATACTATTTATCATATAGTATATTAGCCAAAAAAAACACCTTGTAAAACTCTCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735152" ref_strand="+" ref_description="SGN-E735152 [LB14CC11]">
      <seq>attttattctctactcatctccaaatttttgttaaattaacctaaaaaataaaagatggcttctaacacattgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattagagaacttggcaactcacttggctgacccatggcacaacattggggatgttattatccctaaaggcattttccctaattaaattatactatttatcatatagtatattagccaaaaaaaacacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67065" g_stop="67260" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="249" r_length="196" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="352" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="641" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68141" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="837" r_length="196" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E735152" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67065" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGT</genome_strand>
        <mrna_strand>AGATGGCTTCTAACACATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTAGAGAACTTGGCAACTCACTTGGCTGACCCATGG--C-ACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTATACTATTTATCATATAGTATATTAGCCAAAAAAAACACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726226" ref_strand="+" ref_description="SGN-E726226 [LA11AG11]">
      <seq>aatttttgttaaattaacctaaaaaataaaagatggcttctaacacattgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattagagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaaattaatactatttatcatatagtatattagccaaaaaaaaacaccttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67065" g_stop="67260" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="226" r_length="196" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="329" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="618" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68133" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="811" r_length="193" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E726226" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67065" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATT-AAATT-GTACTATTTATCATATAGTATATTAGCCAAAAA</genome_strand>
        <mrna_strand>AGATGGCTTCTAACACATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTAGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAAATTAATACTATTTATCATATAGTATATTAGCCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728611" ref_strand="+" ref_description="SGN-E728611 [LA18BE04]">
      <seq>ctcatctccaaatttttgttaaattaacctaaaaaatagaagatggcttctaacacattgatgaattatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattaaatgcccggacaaccccgtccatcctacctcgacggctcagaccccggagatttcagatttgatccacttggttttggagaagtaccacaaaatttggaaagatacaaagaatctgaacttattcattgcaaatgggctatgcttgctgatccagggatcataataccacaggcattgggcttaggtaattgggtcagggcccaagaatgggcagccattcctggtggaccagctacatatttgggccatcctgttccatggggaactcttcctactattttggctattgaatttttagccatagcctttgtagaacatccaaggagtatggaaaaagattcacaaaagaagaagtaccctggtggggcttttgacccattgcgttactctaaacaccctgctaaatttgaagaactcaaagtcaacgaaatcaagaatggtcgtcttgcattggtggcatttgtgggattttgtgtacaacaatcagcatatccacgaacaggaccattagagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatcctctaaggcattttcgctagataaattatactatttatcatatagtatattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67065" g_stop="67260" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="236" r_length="196" r_score="0.821"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.994" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="339" r_length="103" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="628" r_length="289" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68126" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="812" r_length="184" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E728611" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67065" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAG</genome_strand>
        <mrna_strand>AGATGGCTTCTAACACATTGATGAATTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTAAATGCCCGGACAACCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCAGATTTGATCCACTTGGTTTTGGAGAAGTACCACAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAAATGGGCTATGCTTGCTGAT.......................................................................................CCAGGGATCATAATACCACAGGCATTGGGCTTAGGTAATTGGGTCAGGGCCCAAGAATGGGCAGCCATTCCTGGTGGACCAGCTACATATTTGGGCCATCCTGTTCCATGGGGAACTCTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACATCCAAGGAGTATGGAAAAAGATTCACAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGCGTTACTCTAAACACCCTGCTAAATTTGAAGAACTCAAAGTCAACGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGGTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCACGAACAGGACCATTAGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCTCTAAGGCATTTTCGCTAGATAAATTATACTATTTATCATATAGTATATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733096" ref_strand="+" ref_description="SGN-E733096 [LB03DH03]">
      <seq>cgattttattctctactcatctccaaatttttgttaaattaacctaaaaaataaaagatggcttctaacacattgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaataccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattagagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattatactatttatcatatagtatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67065" g_stop="67260" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="251" r_length="196" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="354" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="643" r_length="289" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68124" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="825" r_length="182" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E733096" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67065" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATT</genome_strand>
        <mrna_strand>AGATGGCTTCTAACACATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAATACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTAGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTATACTATTTATCATATAGTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737424" ref_strand="+" ref_description="SGN-E737424 [LC09DA12]">
      <seq>cgctcatctccaaatttttgttaaattaacctaaaaaataaaagatggcttctaacacattgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattagagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttcccctaattaaattatactatttatcatatagtatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67065" g_stop="67260" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="238" r_length="196" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="341" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="630" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68123" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="812" r_length="182" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E737424" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67065" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTT-CCCTAATTAAATTGTACTATTTATCATATAGTATAT</genome_strand>
        <mrna_strand>AGATGGCTTCTAACACATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTAGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCCTAATTAAATTATACTATTTATCATATAGTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728390" ref_strand="+" ref_description="SGN-E728390 [LA17CF12]">
      <seq>ttcattttctatttcattctctactcatctccaaatttttgttaaattaacctaaaaaataaaagatggcttctaacacattgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccgggaacaggaccattagagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaattatactatttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67065" g_stop="67260" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="259" r_length="196" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="362" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="651" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68112" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="820" r_length="169" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E728390" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67065" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATC</genome_strand>
        <mrna_strand>AGATGGCTTCTAACACATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCGGGAACAGGACCATTAGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATT-AATTATACTATTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731158" ref_strand="+" ref_description="SGN-E731158 [LA26BC08]">
      <seq>aatttttgttaaattaacctaaaaaataaaagatggcttctaacacattgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccnggaacaggaccattagagaacttggcaactcacttggctgacccatggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67065" g_stop="67260" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="226" r_length="196" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="329" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="618" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68050" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="726" r_length="108" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E731158" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67065" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACA</genome_strand>
        <mrna_strand>AGATGGCTTCTAACACATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCNGGAACAGGACCATTAGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371623" ref_strand="+" ref_description="SGN-E371623 [TUS-29-O14]">
      <seq>tattctctactcatctccaaatttttgttaaattaacctaaaaaataaaagatggcttctaacacattgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67065" g_stop="67260" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="245" r_length="196" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="348" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="637" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="67961" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="656" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E371623" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67065" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="67961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGC</genome_strand>
        <mrna_strand>AGATGGCTTCTAACACATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299187" ref_strand="+" ref_description="SGN-E299187 [cLET-42-N4]">
      <seq>ttgttaaattaacctaaaaaataatagatggcttctaacacattgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67065" g_stop="67260" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="221" r_length="196" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="324" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67829" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="591" r_length="267" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E299187" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67065" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTC</genome_strand>
        <mrna_strand>AGATGGCTTCTAACACATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283482" ref_strand="+" ref_description="SGN-E283482 [cLER-12-L14]">
      <seq>tttattctctactcatctccaaatttttgttaaattaacctaaaaaataaaagatggcttctaacacattgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67065" g_stop="67260" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="247" r_length="196" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="350" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67802" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="590" r_length="240" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E283482" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67065" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCT</genome_strand>
        <mrna_strand>AGATGGCTTCTAACACATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283461" ref_strand="+" ref_description="SGN-E283461 [cLER-12-B10]">
      <seq>tttttgttaaattaacctaaaaaataaaagatggcttctaacacattgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcacaaaagaagaagtaccctggtggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67065" g_stop="67260" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="224" r_length="196" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="327" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67780" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="545" r_length="218" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E283461" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67065" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGC</genome_strand>
        <mrna_strand>AGATGGCTTCTAACACATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCACAAAAGAAGAAGTACCCTGGTGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467594" ref_strand="+" ref_description="SGN-E467594 [cSTB-1-C4]">
      <seq>atttttttgaaccatttgttaaattaaccaaaagaaaatggcttctaacacattgatgagttatggaattgcaccctgtttgcccctctattctctctgcttccaagtctaaattcgtcaccgcgttgccggtatccgccggagttaccaacgacaccgtcaaggttcaccatgtcggccgattggatgcccgggcagccccgtccatcctacctcgacggctcagcccccggagattttggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccaggaatcattgtaccagaggcattgggcttaggtaattgggttaaggcccaagaatgggcagctattcctggaggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggttattgaatttttagccatagcctttgtagagcatcaaaggagtatggaaaaagattcagaaaagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66886" stop="68064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67065" g_stop="67260" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="233" r_length="198" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="336" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67764" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="538" r_length="202" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E467594" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67065" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCA-GCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCA-TGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGA</genome_strand>
        <mrna_strand>AAATGGCTTCTAACACATTGATGAGTTATGGAATTGCACCCTGTTTGCCCCTCTATTCTCTCTGCTTCCAAGTCTAAATTCGTCACCGCGTTGCCGGTATCCGCCGGAGTTACCAACGACACCGTCAAGGTTCACCATGTCGGCCGATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGAATCATTGTACCAGAGGCATTGGGCTTAGGTAATTGGGTTAAGGCCCAAGAATGGGCAGCTATTCCTGGAGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGTTATTGAATTTTTAGCCATAGCCTTTGTAGAGCATCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291886" ref_strand="+" ref_description="SGN-E291886 [cLET-7-F4]">
      <seq>caaatttttgttaaattaacctaaaaaataaaagatggcttctaacacattgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67065" g_stop="67260" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="228" r_length="196" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="331" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67749" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="518" r_length="187" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E291886" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67065" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAG</genome_strand>
        <mrna_strand>AGATGGCTTCTAACACATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280996" ref_strand="+" ref_description="SGN-E280996 [cLER-7-B13]">
      <seq>tttttgttaaattaacctaaaaaataaaagatggcttctaacacattgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67065" g_stop="67260" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="224" r_length="196" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="327" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67729" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="494" r_length="167" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E280996" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67065" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACA</genome_strand>
        <mrna_strand>AGATGGCTTCTAACACATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725619" ref_strand="+" ref_description="SGN-E725619 [LA04BC02]">
      <seq>ctactcatctccaaatttttgttaaattaacctaaaaaataaaagatggcttctaacacattgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67065" g_stop="67260" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="239" r_length="196" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="342" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67729" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="509" r_length="167" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E725619" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67065" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACA</genome_strand>
        <mrna_strand>AGATGGCTTCTAACACATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283651" ref_strand="+" ref_description="SGN-E283651 [cLES-1-F7]">
      <seq>gctcatctccaaatttttgttaaattaacctaaaaaataaaagatggcttctaacacattgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcagccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgtgtcaaggcccaagagtgggcagccattcctggtggacaagctacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="67951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67065" g_stop="67260" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="237" r_length="196" r_score="0.852"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="340" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67651" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="429" r_length="89" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E283651" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67065" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATA</genome_strand>
        <mrna_strand>AGATGGCTTCTAACACATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCAGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGTGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734876" ref_strand="+" ref_description="SGN-E734876 [LB13DC12]">
      <seq>atgtcttctaacacattgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattagagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattatactatttatcatatagtatattagccaaaaaaaacaccttgtaaaactctcccatattgtactcatatagtcttgtaatgaaatggactctttgtgtatcctgggtctatgcatgatatctctatctaaatatccattttattcgtacatgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67067" g_stop="67260" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.845"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="297" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="586" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="841" r_length="255" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="898" polyA_stop="913"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E734876" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67067" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCC---AAAAACACCTTGTAAAACTCTCCC--A-TGTACT-A-ATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>ATGTCTTCTAACACATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTAGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTATACTATTTATCATATAGTATATTAGCCAAAAAAAACACCTTGTAAAACTCTCCCATATTGTACTCATATAGTCTTGTAATGAAATGGACTCTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728620" ref_strand="+" ref_description="SGN-E728620 [LA18BF04]">
      <seq>ctcatctcacaatttttgttaaataaacctaaaaaataaaagatggcttcataacacattgatgagttatggaatagcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggaatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccggacaaccccgtccatcctacctcgacggctcacaccccggagatttcggatttgatccacttggttttggagaagaaccataaaatttggaaagatactaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagaaccacatgcattgggcttaggtaattgggtcaaggcccaagagtgagcagctgttcctggtggacaagctacatatttgggccatcctgtaccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtataacaccaacggagtatggaaaaagattcagaaaataagaattaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcataagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccacgaacaggaccattacagaacttggcaactcacttggctgacccatggtacaaatacattggggatgttattatccctgaaggcattttctctaattacattatactatctatcctatagtatattaaccaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67070" stop="68433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67070" g_stop="67260" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="237" r_length="192" r_score="0.812"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="340" r_length="103" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="630" r_length="290" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68134" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="822" r_length="192" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E728620" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67070" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTC-TAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCA-AAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAAC</genome_strand>
        <mrna_strand>GCTTCATAACACATTGATGAGTTATGGAATAGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGAATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGACAACCCCGTCCATCCTACCTCGACGGCTCACACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGAACCATAAAATTTGGAAAGATACTAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGAACCACATGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGAGCAGCTGTTCCTGGTGGACAAGCTACATATTTGGGCCATCCTGTACCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTATAACACCAACGGAGTATGGAAAAAGATTCAGAAAATAAGAATTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCATAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCACGAACAGGACCATTACAGAACTTGGCAACTCACTTGGCTGACCCATGGTACAAATACATTGGGGATGTTATTATCCCTGAAGGCATTTTCTCTAATTACATTATACTATCTATCCTATAGTATATTAACCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738656" ref_strand="+" ref_description="SGN-E738656 [LC14CA01]">
      <seq>ctaatacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66774" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67074" g_stop="67260" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="290" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="579" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="826" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E738656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67074" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>CTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733121" ref_strand="+" ref_description="SGN-E733121 [LB04AB05]">
      <seq>cttcacattgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattagagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattatactatttatcatatagtatattagccaaaaaaaacaccttgtaaaactctcccatattgtactcatatagtcttgtaatgaaatggactctttgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67074" g_stop="67260" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.834"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="289" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="578" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68154" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="793" r_length="215" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E733121" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67074" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCC---AAAAACACCTTGTAAAACTCTCCCAT</genome_strand>
        <mrna_strand>CTT-CACATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTAGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTATACTATTTATCATATAGTATATTAGCCAAAAAAAACACCTTGTAAAACTCTCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358264" ref_strand="+" ref_description="SGN-E358264 [cLHT-28-K16]">
      <seq>taacacattgatgagttatggaattgcacctgtttaccgctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagctaccaacgacacgtcaaggttcagcatgtcggccaattggatgcccgggcagcctcgtccatcctacctcgatggctcagcccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccaggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggttattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaagaaatcaagaatggtcgtcttgcattgttggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66869" stop="68263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67075" g_stop="67260" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.844"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="289" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="578" r_length="289" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="67963" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="599" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E358264" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67075" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="67963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCAT</genome_strand>
        <mrna_strand>TAACACATTGATGAGTTATGGAATTGCACCTGTTTACCGCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGCTACCAACGACACGTCAAGGTTCAGCATGTCGGCCAATTGGATGCCCGGGCAGCCTCGTCCATCCTACCTCGATGGCTCAGCCCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGTTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAAGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734762" ref_strand="+" ref_description="SGN-E734762 [LB13CB03]">
      <seq>aacacattgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattagagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattanattatactatttatcatatagtatattagccaaaaaaaacaccttgtaaaactctcccatattgtactcatatagtcttgtaatgaaatggactctttgtgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67076" g_stop="67260" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.843"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="288" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="577" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68154" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="792" r_length="215" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="835" polyA_stop="849"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E734762" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67076" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCC-AAAAA--CACCTTGTAAAACTCTCCCAT</genome_strand>
        <mrna_strand>AACACATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTAGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTANATTATACTATTTATCATATAGTATATTAGCCAAAAAAAACACCTTGTAAAACTCTCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278852" ref_strand="+" ref_description="SGN-E278852 [cLER-2-H16]">
      <seq>atacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66777" stop="68034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67077" g_stop="67260" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="287" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67734" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="459" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E278852" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67077" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAA</genome_strand>
        <mrna_strand>ATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735783" ref_strand="+" ref_description="SGN-E735783 [LC03AA04]">
      <seq>tacattgatgagttgtggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggaaattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcaaatgggctatgcttgctgttcccggaatcatagtaccaaaggcattgggcttaggtaattgggtcaaggcccaaaaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacccttcctactattttggctattgaatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66778" stop="68008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67078" g_stop="67260" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="286" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67708" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="432" r_length="146" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E735783" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67078" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCT</genome_strand>
        <mrna_strand>TACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AAATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAAATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAAAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAAAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACCCTTCCTACTATTTTGGCTATTGAATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740618" ref_strand="+" ref_description="SGN-E740618 [LC22AH07]">
      <seq>cattgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattagagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaatttaattatactatttatcatatagtatattagccaaaaaaaacaccttgtaaaactctcccatattgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67080" g_stop="67260" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.845"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="284" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="573" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68160" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="794" r_length="221" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E740618" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67080" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCC---AAAAACACCTTGTAAAACTCTCCCATGTACTA</genome_strand>
        <mrna_strand>CATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTAGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTTAATTATACTATTTATCATATAGTATATTAGCCAAAAAAAACACCTTGTAAAACTCTCCCATATTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736882" ref_strand="+" ref_description="SGN-E736882 [LC07CF11]">
      <seq>cattgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattagagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattatactatttatcatatagtatattagccaaaaaaaacaccttgtaaaactctcccatattgtactcatatagtcttgtaatgaaatggactctttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67080" g_stop="67260" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.845"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="284" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="573" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68154" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="788" r_length="215" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E736882" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67080" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCC---AAAAACACCTTGTAAAACTCTCCCAT</genome_strand>
        <mrna_strand>CATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTAGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTATACTATTTATCATATAGTATATTAGCCAAAAAAAACACCTTGTAAAACTCTCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326431" ref_strand="+" ref_description="SGN-E326431 [cTOC-14-M10]">
      <seq>attgatgagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagataccaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67081" g_stop="67260" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.844"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="284" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67768" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="490" r_length="206" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E326431" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67081" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATA-CAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTA</genome_strand>
        <mrna_strand>ATTGATGAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACCAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732440" ref_strand="+" ref_description="SGN-E732440 [LB02AG03]">
      <seq>gagttatggaattgcacctgtttacccctctattctctcttcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattagagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattatactatttatcatatagtatattagccaaaaaaaacaccttgtaaaactctcccatattgtactcatatagtcttgtaatgaaatggactctttgtgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67087" g_stop="67260" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.839"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="277" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="566" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68154" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="781" r_length="215" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="823" polyA_stop="837"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E732440" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67087" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAA---CACCTTGTAAAACTCTCCCAT</genome_strand>
        <mrna_strand>GAGTTATGGAATTGCACCTGTTTACCCCTCTATTCTCTCTTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTAGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTATACTATTTATCATATAGTATATTAGCCAAAAAAAACACCTTGTAAAACTCTCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278794" ref_strand="+" ref_description="SGN-E278794 [cLER-2-D21]">
      <seq>ggaattccagctgtttgcccctctttcctctcttctaccaagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66794" stop="68085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67094" g_stop="67260" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="270" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67785" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="493" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E278794" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67094" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTG</genome_strand>
        <mrna_strand>GGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267015" ref_strand="+" ref_description="SGN-E267015 [cLEI-4-A23]">
      <seq>ggaattgcacctgtttacccctctattctctcgtcttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttactactattgtggctattgaatttttagccatagcctgtgtagaacaccagaggagtatggaaaaagattcagaaaagaagaagtaccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67094" g_stop="67260" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.832"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="270" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67773" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="481" r_length="211" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E267015" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67094" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTG</genome_strand>
        <mrna_strand>GGAATTGCACCTGTTTACCCCTCTATTCTCTCGTCTTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTACTACTATTGTGGCTATTGAATTTTTAGCCATAGCCTGTGTAGAACACCAGAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284403" ref_strand="+" ref_description="SGN-E284403 [cLER-16-K14]">
      <seq>ttccaagtctaaattcgccaccgcgttgccggtatccaccggagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgggggattttgtgtacaacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67129" g_stop="67260" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="235" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="524" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="67988" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="570" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E284403" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67129" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="67988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATC</genome_strand>
        <mrna_strand>TTCCAAGTCTAAATTCGCCACCGCGTTGCCGGTATCCACCGGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGGGGGATTTTGTGTACAACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292898" ref_strand="+" ref_description="SGN-E292898 [cLET-11-N15]">
      <seq>aagtccaaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66833" stop="68135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67133" g_stop="67260" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="231" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67835" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="504" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E292898" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67133" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTC</genome_strand>
        <mrna_strand>AAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247023" ref_strand="+" ref_description="SGN-E247023 [cLEF-41-M22]">
      <seq>aaattcgccgccgcgatgccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66839" stop="68331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67139" g_stop="67260" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="225" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="514" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68031" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="603" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E247023" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67139" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCAC</genome_strand>
        <mrna_strand>AAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291369" ref_strand="+" ref_description="SGN-E291369 [cLET-2-L17]">
      <seq>gccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgatggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66856" stop="68328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67156" g_stop="67260" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="208" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="497" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68028" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="583" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E291369" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67156" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACT</genome_strand>
        <mrna_strand>GCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGATGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294516" ref_strand="+" ref_description="SGN-E294516 [cLET-22-A2]">
      <seq>gccggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66856" stop="68277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67156" g_stop="67260" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="208" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="497" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="67977" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="532" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E294516" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67156" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="67977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGT</genome_strand>
        <mrna_strand>GCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285672" ref_strand="+" ref_description="SGN-E285672 [cLES-5-L23]">
      <seq>cggtgtccgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66858" stop="68130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67158" g_stop="67260" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="206" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67830" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="474" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E285672" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67158" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCA</genome_strand>
        <mrna_strand>CGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578030" ref_strand="-" ref_description="SGN-E578030 [LE08DA10]">
      <seq>cgttggagctaccaactccatgtctcggttctccatgtcagctgattggatgcccgggcagccccgtccatcttacctcgacggctcagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66865" stop="68477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67165" g_stop="67260" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="199" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="488" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68176" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="722" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="723" polyA_stop="738"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E578030" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578030" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67165" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGA</genome_strand>
        <mrna_strand>CGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733736" ref_strand="+" ref_description="SGN-E733736 [LB10DC03]">
      <seq>cctgagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattagagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattatactatttatcatatagtatattagccaaaaaaaacaccttgtaaaactctcccatattgtactcatatagtcttgtaatgaaatggactctttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67167" g_stop="67260" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.819"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="197" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="486" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68154" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="701" r_length="215" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E733736" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67167" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCC---AAAAACACCTTGTAAAACTCTCCCAT</genome_strand>
        <mrna_strand>CCTGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTAGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTATACTATTTATCATATAGTATATTAGCCAAAAAAAACACCTTGTAAAACTCTCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733737" ref_strand="+" ref_description="SGN-E733737 [LB10DC04]">
      <seq>cctgagttaccaacgacacgtcaaggttcagtatgtcggccaattggatgcccgggcagccccgtccatcctacctcgacggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattagagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattatactatttatcatatagtatattagccaaaaaaaacaccttgtaaaactctcccatattgtactcatatagtcttgtaatgaaatggactctttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="66899" stop="68466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67167" g_stop="67260" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.819"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="197" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="486" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68154" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="701" r_length="215" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E733737" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67167" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCC---AAAAACACCTTGTAAAACTCTCCCAT</genome_strand>
        <mrna_strand>CCTGAGTTACCAACGACACGTCAAGGTTCAGTATGTCGGCCAATTGGATGCCCGGGCAGCCCCGTCCATCCTACCTCGACGGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTAGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTATACTATTTATCATATAGTATATTAGCCAAAAAAAACACCTTGTAAAACTCTCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615826" ref_strand="-" ref_description="SGN-E615826 [65629]">
      <seq>attggatgcccggggcagcccccgtccatcctacctcgatggctcagcccccggagattttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcctagtaccagaggcattgggcttaggcaattgggtcaaagcccaagaatgggcagcaattcctggaggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggttattgagtttctagccatagcctttgtagagcatcaaaggagtatggaaaaggattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttgttatccctaaaggcattttccctaattgaattgtaccatcatatatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaaaaaaaaagaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67070" stop="68477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67209" g_stop="67260" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="158" r_length="104" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="447" r_length="289" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68176" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="674" r_length="227" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="675" polyA_stop="693"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E615826" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615826" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67209" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGATGCCC-GGGCAG-CCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTT-GGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGA</genome_strand>
        <mrna_strand>ATTGGATGCCCGGGGCAGCCCCCGTCCATCCTACCTCGATGGCTCAGCCCCCGG................................................................................................................AGATTTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCCTAGTACCAGAGGCATTGGGCTTAGGCAATTGGGTCAAAGCCCAAGAATGGGCAGCAATTCCTGGAGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGTTATTGAGTTTCTAGCCATAGCCTTTGTAGAGCATCAAAGGAGTATGGAAAAGGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTGTTATCCCTAAAGGCATTTTCCCTAATTGAATTGTAC----CATC--ATA-TATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371622" ref_strand="+" ref_description="SGN-E371622 [TUS-29-O14](-)">
      <seq>ggctcagaccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattagagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattatactatttatcatatagtatattagccaaaaaaaacaccttgtaaaactctcccatattgtactcatatagtcttgtaatgaaatggactctttgtgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67070" stop="68466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67247" g_stop="67260" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="117" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="406" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68154" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="621" r_length="215" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E371622" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67247" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCC---AAAAACACCTTGTAAAACTCTCCCAT</genome_strand>
        <mrna_strand>GGCTCAGACCCCGG................................................................................................................AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTAGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTATACTATTTATCATATAGTATATTAGCCAAAAAAAACACCTTGTAAAACTCTCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390836" ref_strand="+" ref_description="SGN-E390836 [TUS-47-A14](-)">
      <seq>cagcccccggagattttggatttgatccacttggtttaggagaagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctggtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67070" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67251" g_stop="67260" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="113" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="402" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="649" r_length="247" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="663"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E390836" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67251" e_stop="67260"/>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>CAGCCCCCGG................................................................................................................AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735721" ref_strand="+" ref_description="SGN-E735721 [LC02DA05]">
      <seq>cgataccccggagatttcggatttgatccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttccagggatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagagtgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttttagccatagcctttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattagagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattatactatttatcatatagtatattagccaaaaaaaacaccttgtaaaactctcccatattgtactcatatagtcttgtaatgaaatggactctttgtgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67070" stop="68466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67373" g_stop="67475" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="114" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="403" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67943" g_stop="68154" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="618" r_length="215" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E735721" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67373" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCC---AAAAACACCTTGTAAAACTCTCCCAT</genome_strand>
        <mrna_strand>AGATTTCGGATTTGATCCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCAGGGATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAGTGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTTTAGCCATAGCCTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTAGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTATACTATTTATCATATAGTATATTAGCCAAAAAAAACACCTTGTAAAACTCTCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405994" ref_strand="+" ref_description="SGN-E405994 [PPI-2-G10]">
      <seq>tttggatttgaccccacttggttttggaaaaattccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcctagtaccagaggcattgggcttaggcaattgggtcaaggcccaagaatgggcagccattcctggaggacaagctacatatttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67089" stop="67957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67377" g_stop="67475" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67563" g_stop="67657" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="195" r_length="95" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E405994" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>194</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67377" e_stop="67475"/>
          <exon e_start="67563" e_stop="67657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGATTTGA-TCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGG</genome_strand>
        <mrna_strand>TTTGGATTTGACCCCACTTGGTTTTGGAAAAATTCCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCCTAGTACCAGAGGCATTGGGCTTAGGCAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGAGGACAAGCTACATATTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460549" ref_strand="+" ref_description="SGN-E460549 [cPRO-31-L7]">
      <seq>ccacttggttttggagaagtaccagaaaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcctagtaccagaggcattgggcttaggcaattgggtcaaagcccaagaatgggcagcaattcctggaggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggttattgagtttctagccatagcctttgtagagcatcaaaggagtatggaaaaggattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttgttatccctaaaggcattttccctaattgaattgtaccatcatatatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttttgtgtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67089" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67389" g_stop="67475" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="376" r_length="289" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="616" r_length="240" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E460549" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67389" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>CCACTTGGTTTTGGAGAAGTACCAGAAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCCTAGTACCAGAGGCATTGGGCTTAGGCAATTGGGTCAAAGCCCAAGAATGGGCAGCAATTCCTGGAGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGTTATTGAGTTTCTAGCCATAGCCTTTGTAGAGCATCAAAGGAGTATGGAAAAGGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTGTTATCCCTAAAGGCATTTTCCCTAATTGAATTGTAC----CATC--ATA-TATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296543" ref_strand="+" ref_description="SGN-E296543 [cLET-19-B24]">
      <seq>ccacttggtttaggataagtacctgcaaatttggaaagatacaaagaatctgaacttattcattgcggatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67089" stop="68070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67389" g_stop="67475" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67563" g_stop="67770" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="295" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E296543" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67389" e_stop="67475"/>
          <exon e_start="67563" e_stop="67770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACC</genome_strand>
        <mrna_strand>CCACTTGGTTTAGGATAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCGGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340625" ref_strand="+" ref_description="SGN-E340625 [cTOF-1-G24]">
      <seq>tacctgcaaatttggaaagaataaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattgggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggacttttctgtgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67108" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67408" g_stop="67475" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="357" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="606" r_length="249" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="609" polyA_stop="619"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E340625" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67408" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATT-GGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGAC-TTTCTGT</genome_strand>
        <mrna_strand>TACCTGCAAATTTGGAAAGAATAAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294523" ref_strand="+" ref_description="SGN-E294523 [cLET-22-C20]">
      <seq>acctgcaaatttggaaagatacaaagaatctgaacttattcattgcggatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaagtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67109" stop="68436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67409" g_stop="67475" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="356" r_length="289" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67943" g_stop="68136" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="550" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E294523" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67409" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACAC</genome_strand>
        <mrna_strand>ACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCGGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAAGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740835" ref_strand="+" ref_description="SGN-E740835 [LC23AD08]">
      <seq>caaatttggaaagatactaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67114" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67414" g_stop="67475" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="351" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="598" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="601" polyA_stop="610"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E740835" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67414" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>CAAATTTGGAAAGATACTAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737661" ref_strand="+" ref_description="SGN-E737661 [LC10DA12]">
      <seq>caaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67114" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67414" g_stop="67475" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="351" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="598" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="601" polyA_stop="610"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E737661" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67414" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>CAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740129" ref_strand="+" ref_description="SGN-E740129 [LC20AH06]">
      <seq>caaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67114" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67414" g_stop="67475" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="351" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="598" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="601" polyA_stop="610"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E740129" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67414" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>CAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279387" ref_strand="+" ref_description="SGN-E279387 [cLER-11-D23]">
      <seq>aaatttggaaagatacaaagaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcactaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67115" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67415" g_stop="67475" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="348" r_length="287" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="595" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="598" polyA_stop="609"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E279387" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67415" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>AAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCA--CTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732281" ref_strand="+" ref_description="SGN-E732281 [LB01DA06]">
      <seq>caatgaatctgaacttattcattgcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67130" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67430" g_stop="67475" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="335" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="582" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="585" polyA_stop="596"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E732281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67430" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>CAATGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287050" ref_strand="+" ref_description="SGN-E287050 [cLES-6-F4]">
      <seq>gcagatgggctatgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67153" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67453" g_stop="67475" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="312" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="559" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="571"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E287050" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67453" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>GCAGATGGGCTATGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734981" ref_strand="+" ref_description="SGN-E734981 [LB14AD12]">
      <seq>cgcttgctgttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatgtcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtatccttagtctagtagttgttgtttggtaaagaggtttaaatattggtatagatgtggtgtggtgctctagtagttctctggatcttcttatatgaaatactggctccgacactgagaggaacatctagttattctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67263" stop="68633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67465" g_stop="67475" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="300" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67943" g_stop="68339" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="697" r_length="397" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E734981" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67465" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCTTAGTCTAGTAGTTGTTGTTTGGTAAAGAGGTTTAAATATTGGTATAGATGTGGTGTGGTGCTCTAGTAGTTCTCTGGATCTTCTTATATGAAATACTGGCTCCGACACTGAGAGGAACATCTAGTTATTCTCAAATACTTGGA</genome_strand>
        <mrna_strand>CGCTTGCTGTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGTCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCTTAGTCTAGTAGTTGTTGTTTGGTAAAGAGGTTTAAATATTGGTATAGATGTGGTGTGGTGCTCTAGTAGTTCTCTGGATCTTCTTATATGAAATACTGGCTCCGACACTGAGAGGAACATCTAGTTATTCTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732044" ref_strand="+" ref_description="SGN-E732044 [LB01AE06]">
      <seq>gttcccggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtatccttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67263" stop="68498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67473" g_stop="67475" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67563" g_stop="67851" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="292" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="539" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="548" polyA_stop="558"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E732044" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67473" e_stop="67475"/>
          <exon e_start="67563" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>GTT.......................................................................................CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284420" ref_strand="+" ref_description="SGN-E284420 [cLER-16-D19]">
      <seq>cggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67265" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67565" g_stop="67851" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="534" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="547"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E284420" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67565" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>CGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340251" ref_strand="+" ref_description="SGN-E340251 [cTOF-2-D12]">
      <seq>ggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggnggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67266" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67566" g_stop="67851" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="534" r_length="248" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="549"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E340251" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67566" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGG-GGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>GGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGNGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339066" ref_strand="+" ref_description="SGN-E339066 [cTOF-6-A5]">
      <seq>ggaatcatagtaccagaggcattgggcttaggtaattgggtcaaggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67266" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67566" g_stop="67851" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="533" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="548"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E339066" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67566" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>GGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E621856" ref_strand="+" ref_description="SGN-E621856 [72217]">
      <seq>cagaggcattgggcttaggcaattgggtcaaagcccaagaatgggcagcaattcctggaggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggttattgagtttctagccatagcctttgtagagcatcaaaggagtatggaaaaggattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttgttatccctaaaggcattttccctaattgaattgtaccatcatatatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67279" stop="68484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67579" g_stop="67851" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68184" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="508" r_length="235" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E621856" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E621856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67579" e_stop="67851"/>
          <exon e_start="67943" e_stop="68184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTT</genome_strand>
        <mrna_strand>CAGAGGCATTGGGCTTAGGCAATTGGGTCAAAGCCCAAGAATGGGCAGCAATTCCTGGAGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGTTATTGAGTTTCTAGCCATAGCCTTTGTAGAGCATCAAAGGAGTATGGAAAAGGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTGTTATCCCTAAAGGCATTTTCCCTAATTGAATTGTAC----CATC--ATA-TATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403043" ref_strand="-" ref_description="SGN-E403043 [PPC-9-O16]">
      <seq>aggcaattgggtcaaagcccaagaatgggcagcaattcctggaggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggttattgagtttctagccatagcctttgtagagcatcaaaggagtatggaaaaggattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttgttatccctaaaggcattttccctaattgaattgtaccatcatatatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttttgtgaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67295" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67595" g_stop="67851" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="497" r_length="240" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="499" polyA_stop="517"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E403043" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403043" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67595" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>AGGCAATTGGGTCAAAGCCCAAGAATGGGCAGCAATTCCTGGAGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGTTATTGAGTTTCTAGCCATAGCCTTTGTAGAGCATCAAAGGAGTATGGAAAAGGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTGTTATCCCTAAAGGCATTTTCCCTAATTGAATTGTAC----CATC--ATA-TATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403111" ref_strand="+" ref_description="SGN-E403111 [PPC-9-L23]">
      <seq>cgaattgggttaaggcccaagaatgggcagctattcctggaggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggttattgaatttttagccatagcctttgtagagcatcaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttgttatccctaaaggcattttccctaattgaattgtaccatcatatatattagccaaaaacaccttgtaaaactctcccatattgtactcatagtcttgtaatgaaaatggactttttgtgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67299" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67597" g_stop="67851" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68154" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="460" r_length="205" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="502" polyA_stop="515"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E403111" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67597" e_stop="67851"/>
          <exon e_start="67943" e_stop="68154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCAT</genome_strand>
        <mrna_strand>CGAATTGGGTTAAGGCCCAAGAATGGGCAGCTATTCCTGGAGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGTTATTGAATTTTTAGCCATAGCCTTTGTAGAGCATCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTGTTATCCCTAAAGGCATTTTCCCTAATTGAATTGTAC----CATC--ATA-TATATTAGCCAAAAACACCTTGTAAAACTCTCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733799" ref_strand="+" ref_description="SGN-E733799 [LB10DH08]">
      <seq>ccgctagcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtatccttagtctagtagttgttgtttggtaaagaggtttaaatattggtatagatgtggtgtggtgctctagtagttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67307" stop="68567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67604" g_stop="67851" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68264" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="569" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="573" polyA_stop="582"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E733799" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67604" e_stop="67851"/>
          <exon e_start="67943" e_stop="68264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCTTAGTCTAGTAGTTGTTGTTTGGTAAAGAGGTTTAAATATTGGTATAGATGTGGTGTGGTGCTCTAGTA</genome_strand>
        <mrna_strand>CCGCTA-GCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCTTAGTCTAGTAGTTGTTGTTTGGTAAAGAGGTTTAAATATTGGTATAGATGTGGTGTGGTGCTCTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733625" ref_strand="+" ref_description="SGN-E733625 [LB10CA11]">
      <seq>catggcccaagaatgggcagccattcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtatccttagtctagtagttgttgtttggtaaagaggtttaaatattggtatagatgtggtgtggtgctctagtagttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67307" stop="68567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67607" g_stop="67851" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68264" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="567" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="580"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E733625" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67607" e_stop="67851"/>
          <exon e_start="67943" e_stop="68264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCTTAGTCTAGTAGTTGTTGTTTGGTAAAGAGGTTTAAATATTGGTATAGATGTGGTGTGGTGCTCTAGTA</genome_strand>
        <mrna_strand>CATGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCTTAGTCTAGTAGTTGTTGTTTGGTAAAGAGGTTTAAATATTGGTATAGATGTGGTGTGGTGCTCTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404853" ref_strand="+" ref_description="SGN-E404853 [PPC-15-F7]">
      <seq>ccattcctggaggacaagctacatatttgggccagcctgttccatggggaacacttccaactattttggttattgaatttttagccatagcctttgtagagcaccaaaggagtacggaaaaagattcagaaaagaagaagtaccctggtggagcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttgttatccctaaaggcattttccctaattgaattgtaccatcatatatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttttgtgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67327" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67627" g_stop="67851" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="465" r_length="240" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="468" polyA_stop="477"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E404853" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67627" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>CCATTCCTGGAGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCAACTATTTTGGTTATTGAATTTTTAGCCATAGCCTTTGTAGAGCACCAAAGGAGTACGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGAGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTGTTATCCCTAAAGGCATTTTCCCTAATTGAATTGTAC----CATC--ATA-TATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342056" ref_strand="+" ref_description="SGN-E342056 [cTOF-10-L23]">
      <seq>tcctggtggacaagctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattatccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgcgtatccttattctagtacttgtcgcttggtaaagaggtttaaatattggtatagatgtggtgtggtgctctagtagttctctggattcttcttatatgaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67331" stop="68592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67631" g_stop="67851" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68292" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="572" r_length="351" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E342056" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67631" e_stop="67851"/>
          <exon e_start="67943" e_stop="68292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCTTAGTCTAGTAGTTGTTGTTTGGTAAAGAGGTTTAAATATTGGTATAGATGTGGTGTGGTGCTCTAGTAGTTCTCTGGA-TCTTCTTATATGAAATAC</genome_strand>
        <mrna_strand>TCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTATCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGCGTATCCTTATTCTAGTACTTGTCGCTTGGTAAAGAGGTTTAAATATTGGTATAGATGTGGTGTGGTGCTCTAGTAGTTCTCTGGATTCTTCTTATATGAAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346173" ref_strand="+" ref_description="SGN-E346173 [cTOF-34-O11]">
      <seq>agctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtatccttagtctagtagttgttgtttggtaaagaggtttaaatattggtatagatgntggtgtggtgctctagtagttctctggatcttcttatatgaaatactggctccgacactgagaggaacatctagttattctcaaatacttggatttttttttttatattcgaagcgatatcataaaaagaaaatcactttggtgtattttggcacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67343" stop="68705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67851" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68405" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="673" r_length="464" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E346173" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67851"/>
          <exon e_start="67943" e_stop="68405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCTTAGTCTAGTAGTTGTTGTTTGGTAAAGAGGTTTAAATATTGGTATAGATG-TGGTGTGGTGCTCTAGTAGTTCTCTGGATCTTCTTATATGAAATACTGGCTCCGACACTGAGAGGAACATCTAGTTATTCTCAAATACTTGGATTTTTTTTTTTATATTCGAAGCGATATCATAAAAAGAAAATCACTTTGGTGTATTTTGGCACATGA</genome_strand>
        <mrna_strand>AGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCTTAGTCTAGTAGTTGTTGTTTGGTAAAGAGGTTTAAATATTGGTATAGATGNTGGTGTGGTGCTCTAGTAGTTCTCTGGATCTTCTTATATGAAATACTGGCTCCGACACTGAGAGGAACATCTAGTTATTCTCAAATACTTGGATTTTTTTTTTTATATTCGAAGCGATATCATAAAAAGAAAATCACTTTGGTGTATTTTGGCACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294024" ref_strand="-" ref_description="SGN-E294024 [cLET-13-N14]">
      <seq>gctacatatttgggccagcctgttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtatccttagtctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67344" stop="68503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67644" g_stop="67851" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68204" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="470" r_length="262" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E294024" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294024" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67644" e_stop="67851"/>
          <exon e_start="67943" e_stop="68204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCTTAGTCTAG</genome_strand>
        <mrna_strand>GCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCTTAGTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319537" ref_strand="-" ref_description="SGN-E319537 [cTOB-15-I16]">
      <seq>gctacatatttgggccagcctgttccatggggagcacttcatactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaatagattcagaaaagaagaagtaccctggtggggcttttgacccattgggttactctaaacaccctgctaaatttgaagaactcaaagtcaagtaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaactccttgtaaaactctcccatgtactaatagatttctaatggaatggactttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67344" stop="68487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67644" g_stop="67851" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68187" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="453" r_length="245" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E319537" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319537" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67644" e_stop="67851"/>
          <exon e_start="67943" e_stop="68187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCT</genome_strand>
        <mrna_strand>GCTACATATTTGGGCCAGCCTGTTCCATGGGGAGCACTTCATACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAATAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAACACCCTGCTAAATTTGAAGAACTCAAAGTCAAGTAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACTCCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283730" ref_strand="+" ref_description="SGN-E283730 [cLES-1-G7](-)">
      <seq>gttccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtatccttagtctagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67365" stop="68506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67665" g_stop="67851" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68206" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="451" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E283730" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67665" e_stop="67851"/>
          <exon e_start="67943" e_stop="68206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCTTAGTCTAGTA</genome_strand>
        <mrna_strand>GTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCTTAGTCTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401126" ref_strand="-" ref_description="SGN-E401126 [PPC-3-M3]">
      <seq>tccatggggaacacttccaactattttggttattgaatttttagccatagcctttgtagagccccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggagcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttgttatccctaaaggcattttccctaattgaattgtaccatcatatatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttttgtgtatccttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67367" stop="68498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67667" g_stop="67851" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="425" r_length="240" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E401126" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401126" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67667" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>TCCATGGGGAACACTTCCAACTATTTTGGTTATTGAATTTTTAGCCATAGCCTTTGTAGAGCCCCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGAGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTGTTATCCCTAAAGGCATTTTCCCTAATTGAATTGTAC----CATC--ATA-TATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540332" ref_strand="+" ref_description="SGN-E540332 [TUS-60-I22](-)">
      <seq>tccatggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaaccccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctggtatccttaaaaaaaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67367" stop="68498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67667" g_stop="67851" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="432" r_length="247" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="466"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E540332" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67667" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>TCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACCCCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348842" ref_strand="+" ref_description="SGN-E348842 [cTOF-29-B6]">
      <seq>atggggaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtatccttagtctagtagttgttgtttggtaaagaggtttaaatattggtatagatgtgggtgtggtgctctagtagttctctggatcttcttatatgaaatactggctccgacactgagaggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67370" stop="68615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67670" g_stop="67851" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68319" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="560" r_length="378" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E348842" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67670" e_stop="67851"/>
          <exon e_start="67943" e_stop="68319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCTTAGTCTAGTAGTTGTTGTTTGGTAAAGAGGTTTAAATATTGGTATAGATGT-GGTGTGGTGCTCTAGTAGTTCTCTGGATCTTCTTATATGAAATACTGGCTCCGACACTGAGAGGAACATCTA</genome_strand>
        <mrna_strand>ATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCTTAGTCTAGTAGTTGTTGTTTGGTAAAGAGGTTTAAATATTGGTATAGATGTGGGTGTGGTGCTCTAGTAGTTCTCTGGATCTTCTTATATGAAATACTGGCTCCGACACTGAGAGGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371522" ref_strand="+" ref_description="SGN-E371522 [TUS-29-L12](-)">
      <seq>gaaacacttcatagtattttggctatagaatttctagccatagcttttgtagaacatcaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccatgctaaatttaaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggttgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtattaatagatttctaatggaatggactttctgtgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67374" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67674" g_stop="67851" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="425" r_length="247" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="437"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E371522" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67674" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>GAAACACTTCATAGTATTTTGGCTATAGAATTTCTAGCCATAGCTTTTGTAGAACATCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCATGCTAAATTTAAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGTTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTATTAATAGATTTCTAATGGAATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371523" ref_strand="+" ref_description="SGN-E371523 [TUS-29-L12]">
      <seq>gaacacttcctactattttggctattgaatttctagccataccttttgtagaacaccacaggattatggaaaaagattcaaaaaagaaaaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtctaggaaatcaagactggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcatctcacttggctgacccatggcacaacaccattgcggatgttattatccctaaaggcattttccctaattacattgtactatttatcatatagtatattaaccaaaaacaccttggaacactctcccatgtactaatagatttctaatggaatggactttctgtgtaaaccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67375" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67675" g_stop="67851" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="424" r_length="247" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E371523" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67675" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>GAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATACCTTTTGTAGAACACCACAGGATTATGGAAAAAGATTCAAAAAAGAAAAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCTAGGAAATCAAGACTG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCATCTCACTTGGCTGACCCATGGCACAACACCATTGCGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTACATTGTACTATTTATCATATAGTATATTAACCAAAAACACCTTGGAACACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280410" ref_strand="+" ref_description="SGN-E280410 [cLER-1-N19]">
      <seq>gaacacttcctactattttggctattgaatttctagccatagcttttgtagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactatctgtgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67375" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67675" g_stop="67851" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="424" r_length="247" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="427" polyA_stop="437"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E280410" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67675" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>GAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTATCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225253" ref_strand="+" ref_description="SGN-E225253 [cLEL-17-E21](-)">
      <seq>tttgtagaacaccaaaggagtatggaaaaagattcaaaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67419" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67719" g_stop="67851" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="380" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="383" polyA_stop="399"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E225253" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67719" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>TTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAAAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225377" ref_strand="+" ref_description="SGN-E225377 [cLEL-17-E21](-)">
      <seq>tagaacaccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67423" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67723" g_stop="67851" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="376" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="395"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E225377" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67723" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>TAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223101" ref_strand="+" ref_description="SGN-E223101 [cLEL-14-M18](-)">
      <seq>accaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtatccttaaacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67429" stop="68503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67729" g_stop="67851" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="370" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="400"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E223101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67729" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>ACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227748" ref_strand="+" ref_description="SGN-E227748 [cLEL-39-C7](-)">
      <seq>ccaaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67430" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67730" g_stop="67851" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="369" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="371" polyA_stop="394"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E227748" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67730" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>CCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298790" ref_strand="-" ref_description="SGN-E298790 [cLET-44-A14]">
      <seq>caaaggagtatggaaaaagattcagaaaagaagaagtaccctggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaagaacaccttgtaaaactctcccatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67431" stop="68456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67731" g_stop="67851" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68156" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="335" r_length="214" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E298790" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298790" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67731" e_stop="67851"/>
          <exon e_start="67943" e_stop="68156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGT</genome_strand>
        <mrna_strand>CAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAGAACACCTTGTAAAACTCTCCCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466108" ref_strand="+" ref_description="SGN-E466108 [cPRO-23-A4]">
      <seq>ccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttgttatccctaaaggcattttccctaattgaattgtaccatcatatatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttttgtgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67469" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67769" g_stop="67851" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="323" r_length="240" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="326" polyA_stop="335"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E466108" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67769" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>CCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTGTTATCCCTAAAGGCATTTTCCCTAATTGAATTGTAC----CATC--ATA-TATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466119" ref_strand="+" ref_description="SGN-E466119 [cPRO-23-C4]">
      <seq>ccctggtggggcttttgacccattgggttactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttgttatccctaaaggcattttccctaattgaattgtaccatcatatatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttttgtgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67469" stop="68492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67769" g_stop="67851" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="323" r_length="240" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="326" polyA_stop="335"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E466119" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67769" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>CCCTGGTGGGGCTTTTGACCCATTGGGTTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTGTTATCCCTAAAGGCATTTTCCCTAATTGAATTGTAC----CATC--ATA-TATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296493" ref_strand="+" ref_description="SGN-E296493 [cLET-19-N12]">
      <seq>cctggtggggcttttgacccatttttttactttaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattagagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattatactatttatcatatagtatattagccaaaaaaaacaccttgtaaaactctcccatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67470" stop="68456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67770" g_stop="67851" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68158" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="301" r_length="219" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E296493" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67770" e_stop="67851"/>
          <exon e_start="67943" e_stop="68158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCC---AAAAACACCTTGTAAAACTCTCCCATGTAC</genome_strand>
        <mrna_strand>CCTGGTGGGGCTTTTGACCCATTTTTTTACTTTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTAGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTATACTATTTATCATATAGTATATTAGCCAAAAAAAACACCTTGTAAAACTCTCCCATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343908" ref_strand="+" ref_description="SGN-E343908 [cTOF-12-H6]">
      <seq>tggtggggcttttgacccattgggctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtatccttagtctagtagttgttgtttggtaaagaggtttaaatattggtatagatgtggntgtggtgctctagtagttctctggatcttcttatatgaaantactggctccgacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67472" stop="68603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67772" g_stop="67851" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68314" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="454" r_length="374" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E343908" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67772" e_stop="67851"/>
          <exon e_start="67943" e_stop="68314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCTTAGTCTAGTAGTTGTTGTTTGGTAAAGAGGTTTAAATATTGGTATAGATGTGG-TGTGGTGCTCTAGTAGTTCTCTGGATCTTCTTATATGAAA-TACTGGCTCCGACACTGAGAGGAAC</genome_strand>
        <mrna_strand>TGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCTTAGTCTAGTAGTTGTTGTTTGGTAAAGAGGTTTAAATATTGGTATAGATGTGGNTGTGGTGCTCTAGTAGTTCTCTGGATCTTCTTATATGAAANTACTGGCTCCGACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223187" ref_strand="+" ref_description="SGN-E223187 [cLEL-14-M18](-)">
      <seq>ctactctaaagaccctgctaaatttgaagaactcaaagtcaaggaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtatccttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67496" stop="68498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67796" g_stop="67851" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68189" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="303" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="312" polyA_stop="333"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E223187" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67796" e_stop="67851"/>
          <exon e_start="67943" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>CTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289520" ref_strand="+" ref_description="SGN-E289520 [cLET-3-O19]">
      <seq>gaaatcaagaatggtcgtcttgcattgttggcatttgtgggattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtatccttagtctagtagttgttgtttggtaaagaggtttaaatattggtatagatgtggtgtggtgctctagtagttctctggatcttcttatatgaaatactggctccgacactgagaggaacatctagttattctcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67637" stop="68633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67839" g_stop="67851" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67943" g_stop="68333" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="404" r_length="391" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E289520" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67839" e_stop="67851"/>
          <exon e_start="67943" e_stop="68333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCAAGAATGGTTAGAATATTAACTCACTCCTTCCTCTTATTATATTTATGGATTTAAGTTATATATGCTGACAATATCAATCTCGATTATTTGTGATTAGGTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCTTAGTCTAGTAGTTGTTGTTTGGTAAAGAGGTTTAAATATTGGTATAGATGTGGTGTGGTGCTCTAGTAGTTCTCTGGATCTTCTTATATGAAATACTGGCTCCGACACTGAGAGGAACATCTAGTTATTCTCAAATA</genome_strand>
        <mrna_strand>GAAATCAAGAATG...........................................................................................GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCTTAGTCTAGTAGTTGTTGTTTGGTAAAGAGGTTTAAATATTGGTATAGATGTGGTGTGGTGCTCTAGTAGTTCTCTGGATCTTCTTATATGAAATACTGGCTCCGACACTGAGAGGAACATCTAGTTATTCTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402102" ref_strand="+" ref_description="SGN-E402102 [PPC-6-M10]">
      <seq>gattttgtgtacaacaatcagcatatccaggaacaggaccattggagaacttggcaactcacttggctgacccatggcacaacaacattggggatgttgttatccctaaaggcattttccctaattgaattgtaccatcatatatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttttgtgtatccttagtctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67670" stop="68503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67970" g_stop="68189" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="227" polyA_stop="239"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E402102" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67970" e_stop="68189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGT</genome_strand>
        <mrna_strand>GATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTGTTATCCCTAAAGGCATTTTCCCTAATTGAATTGTAC----CATC--ATA-TATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345945" ref_strand="+" ref_description="SGN-E345945 [cTOF-24-F14]">
      <seq>tcacttggctgacccatggcacaacaacattggggatgttattatccctaaaggcattttccctaattaaattgtactatttatcatatagtatattagccaaaaacaccttgtaaaactctcccatgtactaatagatttctaatggaatggactttctgtgtatccttagtctagtagttgttgtttggtaaagaggtttaaatattggtatagatgtggtgtggtgctctagtagttctctggatcttcttatatgaaatactggctccgacactgagaggaacatctagttattctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67728" stop="68633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68028" g_stop="68330" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="304" polyA_stop="330"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E345945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68028" e_stop="68330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCTTAGTCTAGTAGTTGTTGTTTGGTAAAGAGGTTTAAATATTGGTATAGATGTGGTGTGGTGCTCTAGTAGTTCTCTGGATCTTCTTATATGAAATACTGGCTCCGACACTGAGAGGAACATCTAGTTATTCTCAA</genome_strand>
        <mrna_strand>TCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCTTAGTCTAGTAGTTGTTGTTTGGTAAAGAGGTTTAAATATTGGTATAGATGTGGTGTGGTGCTCTAGTAGTTCTCTGGATCTTCTTATATGAAATACTGGCTCCGACACTGAGAGGAACATCTAGTTATTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345944" ref_strand="+" ref_description="SGN-E345944 [cTOF-24-F12]">
      <seq>cttagtctagtagttgttgtttggtaaagaggtttaaatattggtatagatgtggtgtggtgctctagtagttctctggatcttcttatatgaaatactggctccgacactgagaggaacatctagttattctcaaatacttggatttttttttttatattcgaagcgatatcataaaaagaaaatcactttggtgtattttggcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="67895" stop="68707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68195" g_stop="68408" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E345944" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>214</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68195" e_stop="68408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGTCTAGTAGTTGTTGTTTGGTAAAGAGGTTTAAATATTGGTATAGATGTGGTGTGGTGCTCTAGTAGTTCTCTGGATCTTCTTATATGAAATACTGGCTCCGACACTGAGAGGAACATCTAGTTATTCTCAAATACTTGGATTTTTTTTTTTATATTCGAAGCGATATCATAAAAAGAAAATCACTTTGGTGTATTTTGGCACATGAAAC</genome_strand>
        <mrna_strand>CTTAGTCTAGTAGTTGTTGTTTGGTAAAGAGGTTTAAATATTGGTATAGATGTGGTGTGGTGCTCTAGTAGTTCTCTGGATCTTCTTATATGAAATACTGGCTCCGACACTGAGAGGAACATCTAGTTATTCTCAAATACTTGGATTTTTTTTTTTATATTCGAAGCGATATCATAAAAAGAAAATCACTTTGGTGTATTTTGGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421800" ref_strand="+" ref_description="SGN-E421800 [STM-33-O16]">
      <seq>caaaacttttttttattgttaaatacttggtccttttttgatattcaaaccgaaatcataaaaagaaaatcactttggtatattttggcacatgaaacacactcaaatattattggtacttcacaaatatacgaactctcaccaaacaagaataatgctcatcctcacacttctctctctaaggctgaactttgcccatggactacaacaaatgcaaagaatagatgcaggcacatcctgcattgggttaatcaatacaacattatagatgccaagcatcagctaactacactagctggtgaaaggaaactggcatgcaaaggaaccttgttcgaagcaacaatctcgttgcagtgtccccctctagctccatcaacgactagatggatgtgtcctggagtagagctttccgtaggaaccagttccctagctgcaactgttttgagccgaagtcgttctgcccttgagcctatcacttgccccagaacagatgctccaatggtaaacgccatagccgctttaggcatcaaaatggacttcctcagaatggctatgaatggcacagctgcatgtacagctgcaaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="68044" stop="69197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68309" g_stop="68897" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E421800" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68309" e_stop="68897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAACATCTAGTTATTCTCAAATACTTGGATTTTTTTTTTTATATTCGAAGCGATATCATAAAAAGAAAATCACTTTGGTGTATTTTGGCACATGAAACAGACTCAAATATTATTGGTACTTCACAAATATACAAAGTGTCACCAAACAAGAATAATGTTCATCCTCACACTTTTCTCTCTAAGGCTCAACTTTGCCCATGGACTACAACAAATGCAAAGAATAGATGCAGGCACATCGTGCATTACGTTAATGAATACAACATTATAGATGCCAAGCATCAGCTAACTACACTAGCTGGTGAAAGGAAACTGGCATGCAGAGGAACCTTGTTCGAAGCAACAATCTCGTTGCAACATCCCGCTCTAGCTCCATCAACGACTAGATGGATGTGTCCTGGAGTAGAGTTTTCAGTAGGAACCAGTTCCCTAGCTGCAACTGTTTTGAGTCGAAGTCGTTCTGCCCTTGAGCCTATTACTTGCCCCAGAACAGATGCTCCAATGGTAAACGCCATAGCCGCTTTAGGCATCAAAATGGACTTCCTCAGAATGGCTATGAATGGCACAGCTGCATGTACAGCTGCAAACCA</genome_strand>
        <mrna_strand>CAAAACTTTTTTTTATTGTTAAATACTTGG-TCCTTTT-TTGATATTCAAACCGAAATCATAAAAAGAAAATCACTTTGGTATATTTTGGCACATGAAACACACTCAAATATTATTGGTACTTCACAAATATACGAACTCTCACCAAACAAGAATAATGCTCATCCTCACACTTCTCTCTCTAAGGCTGAACTTTGCCCATGGACTACAACAAATGCAAAGAATAGATGCAGGCACATCCTGCATTGGGTTAATCAATACAACATTATAGATGCCAAGCATCAGCTAACTACACTAGCTGGTGAAAGGAAACTGGCATGCAAAGGAACCTTGTTCGAAGCAACAATCTCGTTGCAGTGTCCCCCTCTAGCTCCATCAACGACTAGATGGATGTGTCCTGGAGTAGAGCTTTCCGTAGGAACCAGTTCCCTAGCTGCAACTGTTTTGAGCCGAAGTCGTTCTGCCCTTGAGCCTATCACTTGCCCCAGAACAGATGCTCCAATGGTAAACGCCATAGCCGCTTTAGGCATCAAAATGGACTTCCTCAGAATGGCTATGAATGGCACAGCTGCATGTACAGCTGCAAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408537" ref_strand="+" ref_description="SGN-E408537 [PPI-11-K20]">
      <seq>ctagtctcgagttttcatacaagttttttctgtcttgagtaaaatggattttttctctaggaatacaagtgatgactcttcaggtttccagcaagacattgctaggtgcccatttttgacgaatatcaatgagccaactaatttttccttctcaagccccattggttttcccattccagtacgtggaggaaaaggtcctatcttcgaggatggtcctaactttgacatggcattcaggcttttccatggccagaatggtgctgtcccactttctgggagactgtccattacgaatgagaaaccagatcctgaacctgcagctcgtcatttcaaccctttggtggcaaaggcagctaccataagtctctcatcttttggatttggaggaccatttggttttgattcattctctgagaagtggaagaatcaaaagaagaagtctgagtcatccaaaagacagggaggagattcagaacatgaagcactaagcaatgagtggttgcagaatgggaattgtcctattgcgaagtcgtaccgtgctgtaagtactgtccttcctcttgtagcaaaggtttttcagccccctcctggtgtgaaactcaagtgcccccctgctatagtagctgcccgagctgctctatcacggacagcctttgcgaaaaacttgcgaccacaacctttgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="70412" stop="68687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70077" g_stop="69939" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="178" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69938" i_stop="69748" i_length="191">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69747" g_stop="69466" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="460" r_length="282" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69465" i_stop="69213" i_length="253">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69212" g_stop="68987" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="686" r_length="226" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E408537" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70077" e_stop="69939"/>
          <exon e_start="69747" e_stop="69466"/>
          <exon e_start="69212" e_stop="68987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGGATTTTTTCTCTAGGAATACAAGTGATGACTCTTCAGGTTTCCAGCAAGACATTGCTAGATGCCCATTTTTGACGAATATCAATGAGCCAACTAATTTTTCCTTCTCAAGCCCCATTGGTTTGCCCATTCCAGTAAGTTGTTAATTGATCACTTATTTGCAGAAGAACTTTTCTTTGCATTTTCGTAAAATAGTTTGCATGTTGCTGAACCAATCCTGCTAAGGCCTCTCATTTTTGTTTGCCACATTGGTGGGGTGACCATGTCCCTGTCATACTAAATTGATGTGAAGTCTTTCTCATGATTGCTGTGGCACCTGAATCAGGTACGTGGAGGAAAAGGTCCTATCTTCGAGGATGGTCCTAACTTTGACATGGCATTCCGGCTTTTCCATGGCCAGAATGGTGCTGTCCCACTTTCTGGGAGGCTTTCCATTACGAATGAGAAACCAGATCCTGAATCTGTAGCTCGTCATTTCAACCCTTTGGTGGCAAAGGCAGCTACCATAAGTCTCTCATCTTTTGGGTTTGGAGGACCGTTTGGTTTTGATTCATTCTCTGAGAAGTGGAAGAATCAAAAGAAGAAGTCTGAGTCATCCAAAAGACAGGTTTGAGCCATTTCCTTTATGTTTTGTATCTCCCAAATTTCTCAAATGTCAAAGCTGTTGAATTTCATTGCAACTTCTCAAATATGACTTTGTCAAATGTTCATGGTCCAGGGAAACACTTTATTTGACTTCTTAAACTTCGTATAACTCTTGAAATATGATTGTTGGTGGACTTGAAAAACTTATCACTTTTGATGGAATAACCAAAACTCAGTCATATTGTTCCTGCTAACCATCATTTTGGATCTATCAGGGAGGAGATTCAGAACATGAAGCACTAAGCAATGAGTGGTTGCAGAATGGGAATTGTCCTATTGCAAAGTCGTACCGTGCTGTAAGTACTGTCCTTCCTCTTGTAGCAAAGGTTTTTCAGCCCCCTCCTGGTGTGAAACTCAAGTGCCCCCCTGCTATAGTAGCTGCCCGAGCTGCTCTATCACGGACAGCCTTTGCGAAAAACTTGCGACCACAACCTCTGCCTG</genome_strand>
        <mrna_strand>TAAAATGGATTTTTTCTCTAGGAATACAAGTGATGACTCTTCAGGTTTCCAGCAAGACATTGCTAGGTGCCCATTTTTGACGAATATCAATGAGCCAACTAATTTTTCCTTCTCAAGCCCCATTGGTTTTCCCATTCCA...............................................................................................................................................................................................GTACGTGGAGGAAAAGGTCCTATCTTCGAGGATGGTCCTAACTTTGACATGGCATTCAGGCTTTTCCATGGCCAGAATGGTGCTGTCCCACTTTCTGGGAGACTGTCCATTACGAATGAGAAACCAGATCCTGAACCTGCAGCTCGTCATTTCAACCCTTTGGTGGCAAAGGCAGCTACCATAAGTCTCTCATCTTTTGGATTTGGAGGACCATTTGGTTTTGATTCATTCTCTGAGAAGTGGAAGAATCAAAAGAAGAAGTCTGAGTCATCCAAAAGACAG.............................................................................................................................................................................................................................................................GGAGGAGATTCAGAACATGAAGCACTAAGCAATGAGTGGTTGCAGAATGGGAATTGTCCTATTGCGAAGTCGTACCGTGCTGTAAGTACTGTCCTTCCTCTTGTAGCAAAGGTTTTTCAGCCCCCTCCTGGTGTGAAACTCAAGTGCCCCCCTGCTATAGTAGCTGCCCGAGCTGCTCTATCACGGACAGCCTTTGCGAAAAACTTGCGACCACAACCTTTGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574812" ref_strand="+" ref_description="SGN-E574812 [34339]">
      <seq>gtaaaatggatttttcctctaggaatacaagtgatgactcttcagtttccagcaagacattgctagtgcccatttttgacgaatatcaatgagccaactaatttttccttctcaagccccgttggttttcccattccagtacgtggaggaaaaggtcctatcttcgaggatggtcctaactttgacatggcattcaggcttttccatggccagaatggtgctgtcccactttctgggagactgtccattacgaatgagaaaccagatcctgaacctgcagctcgtcatttcaaccctttggtggcaaaggcagctaccataagtctctcatcttttggatttggaggaccatttggttttgattcattctctgagaagtggaagaatcaaaagaagaagtctgagtcatccaaaagacagggaggagattcagaacatgaagcactaagcaatgagtggttgcagaatgggaattgtcctattgcgaagtcgtaccgtgctgtaagtactgtccttcctcttgtagcaaaaggtttttccagccccctcctggtgtgaaacttcaaagtgcccccctgctatagtaagctgcccggagctgctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="70378" stop="68733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70078" g_stop="69939" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69938" i_stop="69748" i_length="191">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69747" g_stop="69466" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="420" r_length="282" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69465" i_stop="69213" i_length="253">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69212" g_stop="69033" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="606" r_length="186" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E574812" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70078" e_stop="69939"/>
          <exon e_start="69747" e_stop="69466"/>
          <exon e_start="69212" e_stop="69033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAATGGATTTTTTCTCTAGGAATACAAGTGATGACTCTTCAGGTTTCCAGCAAGACATTGCTAGATGCCCATTTTTGACGAATATCAATGAGCCAACTAATTTTTCCTTCTCAAGCCCCATTGGTTTGCCCATTCCAGTAAGTTGTTAATTGATCACTTATTTGCAGAAGAACTTTTCTTTGCATTTTCGTAAAATAGTTTGCATGTTGCTGAACCAATCCTGCTAAGGCCTCTCATTTTTGTTTGCCACATTGGTGGGGTGACCATGTCCCTGTCATACTAAATTGATGTGAAGTCTTTCTCATGATTGCTGTGGCACCTGAATCAGGTACGTGGAGGAAAAGGTCCTATCTTCGAGGATGGTCCTAACTTTGACATGGCATTCCGGCTTTTCCATGGCCAGAATGGTGCTGTCCCACTTTCTGGGAGGCTTTCCATTACGAATGAGAAACCAGATCCTGAATCTGTAGCTCGTCATTTCAACCCTTTGGTGGCAAAGGCAGCTACCATAAGTCTCTCATCTTTTGGGTTTGGAGGACCGTTTGGTTTTGATTCATTCTCTGAGAAGTGGAAGAATCAAAAGAAGAAGTCTGAGTCATCCAAAAGACAGGTTTGAGCCATTTCCTTTATGTTTTGTATCTCCCAAATTTCTCAAATGTCAAAGCTGTTGAATTTCATTGCAACTTCTCAAATATGACTTTGTCAAATGTTCATGGTCCAGGGAAACACTTTATTTGACTTCTTAAACTTCGTATAACTCTTGAAATATGATTGTTGGTGGACTTGAAAAACTTATCACTTTTGATGGAATAACCAAAACTCAGTCATATTGTTCCTGCTAACCATCATTTTGGATCTATCAGGGAGGAGATTCAGAACATGAAGCACTAAGCAATGAGTGGTTGCAGAATGGGAATTGTCCTATTGCAAAGTCGTACCGTGCTGTAAGTACTGTCCTTCCTCTTGTAGC-AAAGGTTTTT-CAGCCCCCTCCTGGTGTGAAAC-TC-AAGTGCCCCCCTGCTATAGT-AGCTGCCC-GAGCTGCTCTA</genome_strand>
        <mrna_strand>GTAAAATGGATTTTTCCTCTAGGAATACAAGTGATGACTCTTCA-GTTTCCAGCAAGACATTGCTAG-TGCCCATTTTTGACGAATATCAATGAGCCAACTAATTTTTCCTTCTCAAGCCCCGTTGGTTTTCCCATTCCA...............................................................................................................................................................................................GTACGTGGAGGAAAAGGTCCTATCTTCGAGGATGGTCCTAACTTTGACATGGCATTCAGGCTTTTCCATGGCCAGAATGGTGCTGTCCCACTTTCTGGGAGACTGTCCATTACGAATGAGAAACCAGATCCTGAACCTGCAGCTCGTCATTTCAACCCTTTGGTGGCAAAGGCAGCTACCATAAGTCTCTCATCTTTTGGATTTGGAGGACCATTTGGTTTTGATTCATTCTCTGAGAAGTGGAAGAATCAAAAGAAGAAGTCTGAGTCATCCAAAAGACAG.............................................................................................................................................................................................................................................................GGAGGAGATTCAGAACATGAAGCACTAAGCAATGAGTGGTTGCAGAATGGGAATTGTCCTATTGCGAAGTCGTACCGTGCTGTAAGTACTGTCCTTCCTCTTGTAGCAAAAGGTTTTTCCAGCCCCCTCCTGGTGTGAAACTTCAAAGTGCCCCCCTGCTATAGTAAGCTGCCCGGAGCTGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709344" ref_strand="+" ref_description="SGN-E709344 [FA51CB02]">
      <seq>aggaaaaggtcctatcttcgaggatgcgccctaactttgacatggcattccggcttttccatggccagaatggtgctgtcccactttctgggaggctttccattacgaatgagaaaccagatcctgaatctgtagctcgtcatttcaacccctttggtggcaaaggcagctaccataagtctctcatcttttgggtttggaggaccgtttggttttgattcattctctgagaagtggaagaatcaaaagaacaagtctgagctccatcccaaagacaggtttgagccatttcctttatgttttgtatctcccaaatttctcaaatgccaaagctgttgaatttcattgcaacttctcaaatatgactttgtcaaatgttcatggtccagggaaacactttatttgacttcttaaacttcgtataactcttgaactatgattgttggtggacttgaaaaacttatcacttttgatggaataaccacaactcagccatattgttcctgctaaccatcattttggatctatcaaggaggagattcacaacatgaagcactaaccaatgagtggttgcagaatggcaattgtcctattgcaaagtcgtaccgcgctgtaagtactgccccttcctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="70039" stop="68810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69739" g_stop="69110" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E709344" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69739" e_stop="69110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAAGGTCCTATCTTCGAGGATG-GTCCTAACTTTGACATGGCATTCCGGCTTTTCCATGGCCAGAATGGTGCTGTCCCACTTTCTGGGAGGCTTTCCATTACGAATGAGAAACCAGATCCTGAATCTGTAGCTCGTCATTTCAA-CCCTTTGGTGGCAAAGGCAGCTACCATAAGTCTCTCATCTTTTGGGTTTGGAGGACCGTTTGGTTTTGATTCATTCTCTGAGAAGTGGAAGAATCAAAAGAAGAAGTCTGAG-T-CATCCAAAAGACAGGTTTGAGCCATTTCCTTTATGTTTTGTATCTCCCAAATTTCTCAAATGTCAAAGCTGTTGAATTTCATTGCAACTTCTCAAATATGACTTTGTCAAATGTTCATGGTCCAGGGAAACACTTTATTTGACTTCTTAAACTTCGTATAACTCTTGAAATATGATTGTTGGTGGACTTGAAAAACTTATCACTTTTGATGGAATAACCAAAACTCAGTCATATTGTTCCTGCTAACCATCATTTTGGATCTATCAGGGAGGAGATTCAGAACATGAAGCACTAAGCAATGAGTGGTTGCAGAATGGGAATTGTCCTATTGCAAAGTCGTACCGTGCTGTAAGTACTG-TCCTTCCTCTTG</genome_strand>
        <mrna_strand>AGGAAAAGGTCCTATCTTCGAGGATGCGCCCTAACTTTGACATGGCATTCCGGCTTTTCCATGGCCAGAATGGTGCTGTCCCACTTTCTGGGAGGCTTTCCATTACGAATGAGAAACCAGATCCTGAATCTGTAGCTCGTCATTTCAACCCCTTTGGTGGCAAAGGCAGCTACCATAAGTCTCTCATCTTTTGGGTTTGGAGGACCGTTTGGTTTTGATTCATTCTCTGAGAAGTGGAAGAATCAAAAGAACAAGTCTGAGCTCCATCCCAAAGACAGGTTTGAGCCATTTCCTTTATGTTTTGTATCTCCCAAATTTCTCAAATGCCAAAGCTGTTGAATTTCATTGCAACTTCTCAAATATGACTTTGTCAAATGTTCATGGTCCAGGGAAACACTTTATTTGACTTCTTAAACTTCGTATAACTCTTGAACTATGATTGTTGGTGGACTTGAAAAACTTATCACTTTTGATGGAATAACCACAACTCAGCCATATTGTTCCTGCTAACCATCATTTTGGATCTATCAAGGAGGAGATTCACAACATGAAGCACTAACCAATGAGTGGTTGCAGAATGGCAATTGTCCTATTGCAAAGTCGTACCGCGCTGTAAGTACTGCCCCTTCCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421799" ref_strand="+" ref_description="SGN-E421799 [STM-33-O16]">
      <seq>ctagtctcgagttttctacaagttttttctgtcttgagtaaaatggattttttctctaggaatacaagtgatgactcttcaggtttccagcaagacattgctaggtgcccatttttgacgaatatcaatgagccaactaatttttccttctcaagccccattggttttcccattccagtacgtggaggaaaaggtcctatcttcgaggatggtcctaactttgacatggcattcaggcttttccatggccagaatggtgctgtcccactttctgggagactgtccattacgaatgagaaaccagatcctgaacctgcagctcgtcatttcaaccctttggtggcaaaggcagctaccataagtctctcatcttttggatttggaggaccatttggttttgattcattctctgagaagtggaagaatcaaaagaagaagtctgagtcatccaaaagacagggaggagattcagaacatgaagcactaagcaatgagtggttgcagaatgggaattgtcctattgcgaagtcgtaccgtgctgtaagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="70412" stop="68823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70077" g_stop="69939" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="177" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69938" i_stop="69748" i_length="191">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69747" g_stop="69466" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="459" r_length="282" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69465" i_stop="69213" i_length="253">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69212" g_stop="69123" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="549" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E421799" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70077" e_stop="69939"/>
          <exon e_start="69747" e_stop="69466"/>
          <exon e_start="69212" e_stop="69123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGGATTTTTTCTCTAGGAATACAAGTGATGACTCTTCAGGTTTCCAGCAAGACATTGCTAGATGCCCATTTTTGACGAATATCAATGAGCCAACTAATTTTTCCTTCTCAAGCCCCATTGGTTTGCCCATTCCAGTAAGTTGTTAATTGATCACTTATTTGCAGAAGAACTTTTCTTTGCATTTTCGTAAAATAGTTTGCATGTTGCTGAACCAATCCTGCTAAGGCCTCTCATTTTTGTTTGCCACATTGGTGGGGTGACCATGTCCCTGTCATACTAAATTGATGTGAAGTCTTTCTCATGATTGCTGTGGCACCTGAATCAGGTACGTGGAGGAAAAGGTCCTATCTTCGAGGATGGTCCTAACTTTGACATGGCATTCCGGCTTTTCCATGGCCAGAATGGTGCTGTCCCACTTTCTGGGAGGCTTTCCATTACGAATGAGAAACCAGATCCTGAATCTGTAGCTCGTCATTTCAACCCTTTGGTGGCAAAGGCAGCTACCATAAGTCTCTCATCTTTTGGGTTTGGAGGACCGTTTGGTTTTGATTCATTCTCTGAGAAGTGGAAGAATCAAAAGAAGAAGTCTGAGTCATCCAAAAGACAGGTTTGAGCCATTTCCTTTATGTTTTGTATCTCCCAAATTTCTCAAATGTCAAAGCTGTTGAATTTCATTGCAACTTCTCAAATATGACTTTGTCAAATGTTCATGGTCCAGGGAAACACTTTATTTGACTTCTTAAACTTCGTATAACTCTTGAAATATGATTGTTGGTGGACTTGAAAAACTTATCACTTTTGATGGAATAACCAAAACTCAGTCATATTGTTCCTGCTAACCATCATTTTGGATCTATCAGGGAGGAGATTCAGAACATGAAGCACTAAGCAATGAGTGGTTGCAGAATGGGAATTGTCCTATTGCAAAGTCGTACCGTGCTGTAAGTACT</genome_strand>
        <mrna_strand>TAAAATGGATTTTTTCTCTAGGAATACAAGTGATGACTCTTCAGGTTTCCAGCAAGACATTGCTAGGTGCCCATTTTTGACGAATATCAATGAGCCAACTAATTTTTCCTTCTCAAGCCCCATTGGTTTTCCCATTCCA...............................................................................................................................................................................................GTACGTGGAGGAAAAGGTCCTATCTTCGAGGATGGTCCTAACTTTGACATGGCATTCAGGCTTTTCCATGGCCAGAATGGTGCTGTCCCACTTTCTGGGAGACTGTCCATTACGAATGAGAAACCAGATCCTGAACCTGCAGCTCGTCATTTCAACCCTTTGGTGGCAAAGGCAGCTACCATAAGTCTCTCATCTTTTGGATTTGGAGGACCATTTGGTTTTGATTCATTCTCTGAGAAGTGGAAGAATCAAAAGAAGAAGTCTGAGTCATCCAAAAGACAG.............................................................................................................................................................................................................................................................GGAGGAGATTCAGAACATGAAGCACTAAGCAATGAGTGGTTGCAGAATGGGAATTGTCCTATTGCGAAGTCGTACCGTGCTGTAAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205719" ref_strand="+" ref_description="SGN-E205719 [cLEC-21-F19]">
      <seq>cttaattcacaaattttcttcctctgagtttgcatacaagttttttttgtcttgagtaaaatggattttttctctaggaatacaagtgatgactcttcaggtttccagcaagacattgctagatgcccatttttgacgaatatcaatgagccaactaatttttccttctcaagccccattggtttgcccattccagtacgtggaggaaaaggtcctatcttcgaggatggtcctaactttgacatggcattccggcttttccatggccagaatggtgctgtcccactttctgggaggctttccattacgaatgagaaaccagatcctgaatctgtagctcgtcatttcaaccctttggtggcaaaggcagctaccataagtctctcatcttttgggtttggaggaccgtttggttttgattcattctctgagaagtggaagaatcaaaagaagaagtctgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="71602" stop="69179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71302" g_stop="71247" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71246" i_stop="70078" i_length="1169">
            <donor d_prob="0.943" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70077" g_stop="69939" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="195" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69938" i_stop="69748" i_length="191">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69747" g_stop="69479" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="464" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E205719" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71302" e_stop="71247"/>
          <exon e_start="70077" e_stop="69939"/>
          <exon e_start="69747" e_stop="69479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATTCACAAATTTTCTTCCTCTGAGTTTTCATACAAGTTTTTTTTGTCTTGAGGTACGTCTTTCTTTTGTTTAATTTCAATGTATCAAGATTTAAGTGTTTGGTAGTTGCAGTGTTTTTTTTTTTTATGTTTGATTTAAGTTGTTGGTTGAATTTGAGAATGGGGTATTGATTTTTAGTGTTTATATTAATGGATTTTGCTTAAAAGATGAATCTTTGATGTTGGAATGAAAAGGGTCTAGTTGGGTATAGCTAACTTCAATGAGTTTCGACTTTATTGTTGTAGTTATTGTTTTGTTATATTGGAAATGAGTTATTGTTGTTGAGCTGAAAGGGTATTGATTTTTAGTGTTTTTTAGTAATGGGTTTTGCTTAAAAGTTGAATCTTTGATATTTGAATGAAAAGGTTCTAATTGGGTATAGCTAACTTCAATCAGTTTGGATTTTATTTTTGTAGTTATTGTTTTGTTATAGTGGAAATGAATATTTGTGTTTGAGCTGAAATTTGACCTGTACTGATGTATGATTAGCAACAGAGTGTTGTACTTCTTTTTTTTGCTATAGTTACTGTTTAGCTTTTTTGTTTGGGTGATTAAAGTTTTTTGTTTGATTTAAGTTGTTGGTCGAATTTGGGAAATGGCTATTACTTTTTAGTGTTTTTTATTGATGTGTTTTGCTTAAAAGACAAATCTTTGATATTGGAAATGAAAAGGGGTTCAAATGGAGCAAAAGGGATATGAAAGATTTATACAGCTGGCCCCAACTTAGTTTAAGATTAGGTCATAGTAGTTATTGGTGTTGTTATATTGCAAATGGGTTTTTGTGTTTGAGCTGATATTTGATCTGTATTCATTCTTTGGAAGTATTAGGTTGGCTTAACAAATGGTTGAGCTTCTTTTTGAATATTTTGGTTAAAAAAACTTGCTAATGAGAACTGGTAATCAAAGTTTATTGAGATTTAAGACTACTAGGTCAAAATTCCTGTTTATAAGAAATGTATACATGAACGTGAACCTTATATATAGTATTCTGGTTTCAAGATATATATATATATATATATATATATATGCATGACTGGACTCTTTTCTAGACTTCATTAATGCTTTGATCAAAAAGTGGTTGGCTTGTGATTTCTTGAACTCATGCTTGCTTTGTTAATTGTCTTTTGATGATTCTGTTGCTCAAATTTATTCTGATTTTTGTCCTGCTCATCCTTCTTCCAGTAAAATGGATTTTTTCTCTAGGAATACAAGTGATGACTCTTCAGGTTTCCAGCAAGACATTGCTAGATGCCCATTTTTGACGAATATCAATGAGCCAACTAATTTTTCCTTCTCAAGCCCCATTGGTTTGCCCATTCCAGTAAGTTGTTAATTGATCACTTATTTGCAGAAGAACTTTTCTTTGCATTTTCGTAAAATAGTTTGCATGTTGCTGAACCAATCCTGCTAAGGCCTCTCATTTTTGTTTGCCACATTGGTGGGGTGACCATGTCCCTGTCATACTAAATTGATGTGAAGTCTTTCTCATGATTGCTGTGGCACCTGAATCAGGTACGTGGAGGAAAAGGTCCTATCTTCGAGGATGGTCCTAACTTTGACATGGCATTCCGGCTTTTCCATGGCCAGAATGGTGCTGTCCCACTTTCTGGGAGGCTTTCCATTACGAATGAGAAACCAGATCCTGAATCTGTAGCTCGTCATTTCAACCCTTTGGTGGCAAAGGCAGCTACCATAAGTCTCTCATCTTTTGGGTTTGGAGGACCGTTTGGTTTTGATTCATTCTCTGAGAAGTGGAAGAATCAAAAGAAGAAGTCTGAGTC</genome_strand>
        <mrna_strand>CTTAATTCACAAATTTTCTTCCTCTGAGTTTGCATACAAGTTTTTTTTGTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAATGGATTTTTTCTCTAGGAATACAAGTGATGACTCTTCAGGTTTCCAGCAAGACATTGCTAGATGCCCATTTTTGACGAATATCAATGAGCCAACTAATTTTTCCTTCTCAAGCCCCATTGGTTTGCCCATTCCA...............................................................................................................................................................................................GTACGTGGAGGAAAAGGTCCTATCTTCGAGGATGGTCCTAACTTTGACATGGCATTCCGGCTTTTCCATGGCCAGAATGGTGCTGTCCCACTTTCTGGGAGGCTTTCCATTACGAATGAGAAACCAGATCCTGAATCTGTAGCTCGTCATTTCAACCCTTTGGTGGCAAAGGCAGCTACCATAAGTCTCTCATCTTTTGGGTTTGGAGGACCGTTTGGTTTTGATTCATTCTCTGAGAAGTGGAAGAATCAAAAGAAGAAGTCTGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439643" ref_strand="+" ref_description="SGN-E439643 [cSTA-12-P14]">
      <seq>atctaaccgaagaaaaccccaaaaccctagtgaaaagcagagagatcccagttgtggggtttttgcatcagaaatttgtcaatggcaagacgaaccctttttcacttggttcgatctcaagcaaatcttctaaaatccaccaatttttattcaggtggtcatctggctagttatggaactaggtcacttgtcagtggtaccaaaactgaccctagtcatgtgacacatctagctactattcgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="72676" stop="75455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72971" g_stop="73126" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73127" i_stop="75063" i_length="1937">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.940" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75064" g_stop="75155" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="246" r_length="92" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E439643" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72971" e_stop="73126"/>
          <exon e_start="75064" e_stop="75155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTACTAACGAAGAAAACCCCAAAACCCTAGTGAAAAACAGAGAGATCTCCAGTTGTGGGG-TTTTGCATCAGAAATTTGTCAATGGCAAGAAGAACCCTTTTTCACTTAGTTCGATCTCAAGCGAATCTACTAAAATCCACCAATTTTCATTCAGGTTCGTGTTTAATTGAATCAAGCAGTTTCATTTCTGTATAATTTATGGTTTCTGTTTCAATTTTCTGTTGTATCTGTATGTAAAATTGTTGGGTTTCAAAGAAAGTGAAAGAAAGTAACACCCTTTTGTTAATCTTGTTAAAAAGCTGTGTAATTTAATGCTATTGTTTTTTTATCAAATTGAAATAAGGTCCAATGTCCCTTCAGCTGGTGATGGGTGTTATATGTTACCTGTAGTGAGGAATCTAGTATTTGAAGTTTATGAGTTCGACTAGTTAGAAGATGACACGACATGACATGTTTTCGACTTATTGATCACACGACATTAGATAGGAGAGTATCGAGGTGGCAGATTAGTATAGAAGGTTAGAATTAATTGAGTATTGTCTCGTTTTGTAGTTTGGGGCTCAATACTGATTTCTCTTTGCATATAGGTACTCTGGTAGTGCAAGTAATGTTCTCAAAGTTTCTTGTCCTCTGATTTTGGGTAATACTTGATGTTTCGCGTGTGCTTTAGTTTTCACATTGTTTTGCTCTGAATGATATGTTATGCTTCTCTATTATATGTTGCGTCTTATTTACTGTTATATTCTCTTTTTCAAACTACTTTGTTATATGTTACTTGAGCTGAGGGTCTTGCTGTTATTTTTGTTGAGTTTCTTCAACGACATCAAGTTAATACTACAATAGTAATGGTGTTCACAGTTAATTATTATATAGATACTTAGTTGATGTCTATGTTAACAATTGTAAAAAAAAAGAAAGAAGATATTTAGTGGATTTCTCAGGGTTAAAGCAAGACCTACTGGATTCTGTGATATATATATATATATAGAATAGTGGGTCCATTGGTACTATGACCACAGTTACTTAAAATATTGGATTTTCCTATCAATGGGAAATTGGAATAGCATAATTGTTATACAGTGCCAGCTTTTGATTACCTGAGTTGGGAGAAAAAGTGGATTGCTTAATGTGGCAAGTAAGCAGGACAACATTGTGGACATCCGTAGAAAATGTCTTTCAGGGGTTAGTATAGAAGAAACATATAGATTTATAGCTCTAAGGTCTTGGGAAAGAGTACGCAATGACCGCCATCTTCATGTTATACACACTTTTCAGTACTGATCCACTGAGACAGGTTAACAGTATTCTGTTATCTTTTTGATCCCTCGACCCTCCCTGTTGTAATGTGTTGATCATGAATCTAGTTTCCGCATTACCAGATGTTAGACTCCTTTTCTAGTTTTCTTCCATAATTTTTGCATTTGAGAATTGGGACAAATGAATGAGTGTTACGTATGTTGTTATTCATATTAGGACCTTAAAACTTTTCCAGGTGAAACATATTTGCTAAAAAGGAAAACATAATTCTTTGTTGTTAAACTCTAAAGGAATGGAATTTCTGTTTTACTAAAGTTCATTGTTGTAGATTCTTCGCCCTATAACTTTCTTTTTTCAGTTGCTAAGCTAAATTTTCTGCTTTCAGGTTGTCGGATGTTGTACTGTAGCCTTTTTCTTTTGATGAAATCACATATTTTGGCCTTCCTCAGCTTTTTCTGTCTTTCCTTCATAAAATCCGTTTACATTAGAATGTCAAATTTTAGCCAATAATATGCAAATCTTCAGATCAAATGATTGACGGCTTATTTTAGCTGCAACATCCCATCCATTTTGCAGGGAACAATCTTGTATTTAATGAAGTAAGAATTAACAAAGTATGGTGCAACTGTTTATCAGGATAAATATTGAACATTCATGTATTATGGTGGTAAAATCCTAGTAAATACATGAAAGAAATCACAATATATTGGAAGAACTTTTTGCTGTATTGCTTCTACTATCTGCATCTCTTTTGTTTATGCAAGTTTATTTTATGACTTGTTCCTAATGATTGTCCTCAAGCTCTTTGCTCATTATTTCCCAATACCTTTTCAGGTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAA</genome_strand>
        <mrna_strand>ATCTA--ACCGAAGAAAACCCCAAAACCCTAGTGAAAAGCAGAGAGATC-CCAGTTGTGGGGTTTTTGCATCAGAAATTTGTCAATGGCAAGACGAACCCTTTTTCACTTGGTTCGATCTCAAGCAAATCTTCTAAAATCCACCAATTTTTATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCATCTGGCTAGTTATGGAACTAGGTCACTTGTCAGTGGTACCAAAACTGACCCTAGTCATGTGACACATCTAGCTACTATTCGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416889" ref_strand="+" ref_description="SGN-E416889 [STM-23-N4]">
      <seq>atctaacgaagaaaaccccaaaaccctagtgaaaagcagagagatcccagttgtggggtttttgcattcagaaatttgtcaatggcaagacgaaccctttttcacttggttcgatctcaagcaaatcttctaaaatccaccaatttttattcaggtggtcatctggctagttatggaactaggtcacttgtcagtggtaccaaaactgaccctagtcatgtgacacatctagctactattcgtaaaaggtggctatcacagtctgcaacagcacacgacgacaacaagatcagcatagggcctcgcaaaggagaaggaggaaatgatgaaaaggatggtggagttgtctactatggtcctatctcaaacacgataaaaaatgtgaagcttctgtccctttcaacctgttgcctctctgtgtctttaggccctgtcgtaaccttcatgtcatctactgattcgaatgtgatactcaagggagcagttgcatctactgttatattcttcagtgcttctactaccgctgcacttcactggtttgtgagtccttatattcacaaactgagatggaagccaggttcagattcttttgaagtggagatgatgtcttggctggcaacttttatgccaaagacgattaaatttgcagatatcaagcatcctgacaccaatagancttacgtaacattcaagggctaacggaacttctatttttgttgatgccgagcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="72676" stop="75942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72974" g_stop="73126" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73127" i_stop="75063" i_length="1937">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.940" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75064" g_stop="75642" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="731" r_length="577" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E416889" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72974" e_stop="73126"/>
          <exon e_start="75064" e_stop="75642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTAACGAAGAAAACCCCAAAACCCTAGTGAAAAACAGAGAGATCTCCAGTTGTGGGG-TTTTGCA-TCAGAAATTTGTCAATGGCAAGAAGAACCCTTTTTCACTTAGTTCGATCTCAAGCGAATCTACTAAAATCCACCAATTTTCATTCAGGTTCGTGTTTAATTGAATCAAGCAGTTTCATTTCTGTATAATTTATGGTTTCTGTTTCAATTTTCTGTTGTATCTGTATGTAAAATTGTTGGGTTTCAAAGAAAGTGAAAGAAAGTAACACCCTTTTGTTAATCTTGTTAAAAAGCTGTGTAATTTAATGCTATTGTTTTTTTATCAAATTGAAATAAGGTCCAATGTCCCTTCAGCTGGTGATGGGTGTTATATGTTACCTGTAGTGAGGAATCTAGTATTTGAAGTTTATGAGTTCGACTAGTTAGAAGATGACACGACATGACATGTTTTCGACTTATTGATCACACGACATTAGATAGGAGAGTATCGAGGTGGCAGATTAGTATAGAAGGTTAGAATTAATTGAGTATTGTCTCGTTTTGTAGTTTGGGGCTCAATACTGATTTCTCTTTGCATATAGGTACTCTGGTAGTGCAAGTAATGTTCTCAAAGTTTCTTGTCCTCTGATTTTGGGTAATACTTGATGTTTCGCGTGTGCTTTAGTTTTCACATTGTTTTGCTCTGAATGATATGTTATGCTTCTCTATTATATGTTGCGTCTTATTTACTGTTATATTCTCTTTTTCAAACTACTTTGTTATATGTTACTTGAGCTGAGGGTCTTGCTGTTATTTTTGTTGAGTTTCTTCAACGACATCAAGTTAATACTACAATAGTAATGGTGTTCACAGTTAATTATTATATAGATACTTAGTTGATGTCTATGTTAACAATTGTAAAAAAAAAGAAAGAAGATATTTAGTGGATTTCTCAGGGTTAAAGCAAGACCTACTGGATTCTGTGATATATATATATATATAGAATAGTGGGTCCATTGGTACTATGACCACAGTTACTTAAAATATTGGATTTTCCTATCAATGGGAAATTGGAATAGCATAATTGTTATACAGTGCCAGCTTTTGATTACCTGAGTTGGGAGAAAAAGTGGATTGCTTAATGTGGCAAGTAAGCAGGACAACATTGTGGACATCCGTAGAAAATGTCTTTCAGGGGTTAGTATAGAAGAAACATATAGATTTATAGCTCTAAGGTCTTGGGAAAGAGTACGCAATGACCGCCATCTTCATGTTATACACACTTTTCAGTACTGATCCACTGAGACAGGTTAACAGTATTCTGTTATCTTTTTGATCCCTCGACCCTCCCTGTTGTAATGTGTTGATCATGAATCTAGTTTCCGCATTACCAGATGTTAGACTCCTTTTCTAGTTTTCTTCCATAATTTTTGCATTTGAGAATTGGGACAAATGAATGAGTGTTACGTATGTTGTTATTCATATTAGGACCTTAAAACTTTTCCAGGTGAAACATATTTGCTAAAAAGGAAAACATAATTCTTTGTTGTTAAACTCTAAAGGAATGGAATTTCTGTTTTACTAAAGTTCATTGTTGTAGATTCTTCGCCCTATAACTTTCTTTTTTCAGTTGCTAAGCTAAATTTTCTGCTTTCAGGTTGTCGGATGTTGTACTGTAGCCTTTTTCTTTTGATGAAATCACATATTTTGGCCTTCCTCAGCTTTTTCTGTCTTTCCTTCATAAAATCCGTTTACATTAGAATGTCAAATTTTAGCCAATAATATGCAAATCTTCAGATCAAATGATTGACGGCTTATTTTAGCTGCAACATCCCATCCATTTTGCAGGGAACAATCTTGTATTTAATGAAGTAAGAATTAACAAAGTATGGTGCAACTGTTTATCAGGATAAATATTGAACATTCATGTATTATGGTGGTAAAATCCTAGTAAATACATGAAAGAAATCACAATATATTGGAAGAACTTTTTGCTGTATTGCTTCTACTATCTGCATCTCTTTTGTTTATGCAAGTTTATTTTATGACTTGTTCCTAATGATTGTCCTCAAGCTCTTTGCTCATTATTTCCCAATACCTTTTCAGGTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAA-GGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATT</genome_strand>
        <mrna_strand>ATCTAACGAAGAAAACCCCAAAACCCTAGTGAAAAGCAGAGAGATC-CCAGTTGTGGGGTTTTTGCATTCAGAAATTTGTCAATGGCAAGACGAACCCTTTTTCACTTGGTTCGATCTCAAGCAAATCTTCTAAAATCCACCAATTTTTATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCATCTGGCTAGTTATGGAACTAGGTCACTTGTCAGTGGTACCAAAACTGACCCTAGTCATGTGACACATCTAGCTACTATTCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACACGACGACAACAAGATCAGCATAGGGCCTCGC-AA--AGGAGAAGGAGGAAATGATGAAAAGGATGGTGGAGTTGTCTACTATGGTCCTATCTCAAACACGATAAAAAATGTGAAGCTTCTGTCCCTTTCAACCTGTTGCCTCTCTGTGTCTTTAGGCCCTGTCGTAACCTTCATGTCATCTACTGATTCGAATGTGATACTCAAGGGAGCAGTTGCATCTACTGTTATATTCTTCAGTGCTTCTACTACCGCTGCACTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTGGCAACTTTTATGCCAAAGACGATTAAATTTGCAGATATCAAGCATCCTGACACCAATAGANCTTACGTAACATTCAAGGGCTAACGGAACTTCTATTTTTGTTGATGCCGAGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720671" ref_strand="+" ref_description="SGN-E720671 [FC11CA02]">
      <seq>ggcatcagaaatttgccaatggcaagaagaaccctttttcacttagttcgatctcaagcgaatctactaaaatccaccaattttcattcaggtggtcatctggctagttttggaactaggtcacttgtcagtggtaccaaacctgaccctagttgtgtgacacatctagctgctatccgtaaaaggtggctatcacagtctgcaacagcacaagacgacaacaagatcagcatagggcctcgcaaaggaggagaaggaggaaatgatgaaaaggatggcggagttgtctactatggtcctatctcaaacacaataaagaatgtgaagcttctgtccctttcaacatgttgcctttctgtgtctttaggccctgtcataaccttcatgacatctactgattcaaatgtgatactaaagggagcagttgcatctaccgttatattcttcagtgcttctactaccgctgcgcttcactggtttgtgagtccttatattcacaaactgagatggaagccaggttcagattcttttgaagtggagatgatgtcttggcttgcaacttttatgccgaagacgattaagtttgcagatatcaagcatcctgacaccaatagaccttatgtaacattcaaggctaacggaaacttttattttgttgatgcggagcattgtccgaacaaggcgctattggcaaaacttaccccacagaaacctactcatgagtcagctttcaagaacttgtgatgacaactttttatctggaataatttgagatttgaaggttttgtattgcattgctcactagaagttccaatacttgagtcttgnatatatataagcctcagttggttgtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="72737" stop="76128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73036" g_stop="73126" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73127" i_stop="75063" i_length="1937">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75064" g_stop="75828" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="856" r_length="765" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E720671" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73036" e_stop="73126"/>
          <exon e_start="75064" e_stop="75828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATCAGAAATTTGTCAATGGCAAGAAGAACCCTTTTTCACTTAGTTCGATCTCAAGCGAATCTACTAAAATCCACCAATTTTCATTCAGGTTCGTGTTTAATTGAATCAAGCAGTTTCATTTCTGTATAATTTATGGTTTCTGTTTCAATTTTCTGTTGTATCTGTATGTAAAATTGTTGGGTTTCAAAGAAAGTGAAAGAAAGTAACACCCTTTTGTTAATCTTGTTAAAAAGCTGTGTAATTTAATGCTATTGTTTTTTTATCAAATTGAAATAAGGTCCAATGTCCCTTCAGCTGGTGATGGGTGTTATATGTTACCTGTAGTGAGGAATCTAGTATTTGAAGTTTATGAGTTCGACTAGTTAGAAGATGACACGACATGACATGTTTTCGACTTATTGATCACACGACATTAGATAGGAGAGTATCGAGGTGGCAGATTAGTATAGAAGGTTAGAATTAATTGAGTATTGTCTCGTTTTGTAGTTTGGGGCTCAATACTGATTTCTCTTTGCATATAGGTACTCTGGTAGTGCAAGTAATGTTCTCAAAGTTTCTTGTCCTCTGATTTTGGGTAATACTTGATGTTTCGCGTGTGCTTTAGTTTTCACATTGTTTTGCTCTGAATGATATGTTATGCTTCTCTATTATATGTTGCGTCTTATTTACTGTTATATTCTCTTTTTCAAACTACTTTGTTATATGTTACTTGAGCTGAGGGTCTTGCTGTTATTTTTGTTGAGTTTCTTCAACGACATCAAGTTAATACTACAATAGTAATGGTGTTCACAGTTAATTATTATATAGATACTTAGTTGATGTCTATGTTAACAATTGTAAAAAAAAAGAAAGAAGATATTTAGTGGATTTCTCAGGGTTAAAGCAAGACCTACTGGATTCTGTGATATATATATATATATAGAATAGTGGGTCCATTGGTACTATGACCACAGTTACTTAAAATATTGGATTTTCCTATCAATGGGAAATTGGAATAGCATAATTGTTATACAGTGCCAGCTTTTGATTACCTGAGTTGGGAGAAAAAGTGGATTGCTTAATGTGGCAAGTAAGCAGGACAACATTGTGGACATCCGTAGAAAATGTCTTTCAGGGGTTAGTATAGAAGAAACATATAGATTTATAGCTCTAAGGTCTTGGGAAAGAGTACGCAATGACCGCCATCTTCATGTTATACACACTTTTCAGTACTGATCCACTGAGACAGGTTAACAGTATTCTGTTATCTTTTTGATCCCTCGACCCTCCCTGTTGTAATGTGTTGATCATGAATCTAGTTTCCGCATTACCAGATGTTAGACTCCTTTTCTAGTTTTCTTCCATAATTTTTGCATTTGAGAATTGGGACAAATGAATGAGTGTTACGTATGTTGTTATTCATATTAGGACCTTAAAACTTTTCCAGGTGAAACATATTTGCTAAAAAGGAAAACATAATTCTTTGTTGTTAAACTCTAAAGGAATGGAATTTCTGTTTTACTAAAGTTCATTGTTGTAGATTCTTCGCCCTATAACTTTCTTTTTTCAGTTGCTAAGCTAAATTTTCTGCTTTCAGGTTGTCGGATGTTGTACTGTAGCCTTTTTCTTTTGATGAAATCACATATTTTGGCCTTCCTCAGCTTTTTCTGTCTTTCCTTCATAAAATCCGTTTACATTAGAATGTCAAATTTTAGCCAATAATATGCAAATCTTCAGATCAAATGATTGACGGCTTATTTTAGCTGCAACATCCCATCCATTTTGCAGGGAACAATCTTGTATTTAATGAAGTAAGAATTAACAAAGTATGGTGCAACTGTTTATCAGGATAAATATTGAACATTCATGTATTATGGTGGTAAAATCCTAGTAAATACATGAAAGAAATCACAATATATTGGAAGAACTTTTTGCTGTATTGCTTCTACTATCTGCATCTCTTTTGTTTATGCAAGTTTATTTTATGACTTGTTCCTAATGATTGTCCTCAAGCTCTTTGCTCATTATTTCCCAATACCTTTTCAGGTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTCAGCTTTCAAGAACTTGTGATGACAACTTTTTATCTGGAATAATTTGAGATTTGAAGGTTTTGTATTGCATTGCTCACTAGAAGTTCCAATACTTGAGTCTTGGATATATATAAGCCTCAGTTGGTTGTCAA</genome_strand>
        <mrna_strand>GGCATCAGAAATTTGCCAATGGCAAGAAGAACCCTTTTTCACTTAGTTCGATCTCAAGCGAATCTACTAAAATCCACCAATTTTCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTCAGCTTTCAAGAACTTGTGATGACAACTTTTTATCTGGAATAATTTGAGATTTGAAGGTTTTGTATTGCATTGCTCACTAGAAGTTCCAATACTTGAGTCTTGNATATATATAAGCCTCAGTTGGTTGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542174" ref_strand="+" ref_description="SGN-E542174 [TUS-63-F13]">
      <seq>caatggcaagaagaaccctttttcacttagttcgatctcaagcgaatctactaaaatccaccaattttcattcaggtggtcatctggctagttttggaactaggtcacttgtcagtggtaccaaacctgaccctagttgtgtgacacatctagctgctatccgtaaaaggtggctatcacagtctgcaacagcacaagacgacaacaagatcagcatagggcctcgcaaaggaggagaaggaggaaatgatgaaaaggatggcggagttgtctactatggtcctatctcaaacacaataaagaatgtgaagcttctgtccctttcaacatgttgcctttctgtgtctttaggccctgtcataaccttcatgacatctactgattcaaatgtgatactaaagggagcagttgcatctaccgttatattcttcagtgcttctactaccgctgcgcttcactggtttgtgagtccttatattcacaaactgagatggaagccaggttcagattcttttgaagtggagatgatgtcttggcttgcaacttttatgccgaagacgatttagtttgcagatatcaagcatcctgacaccaatagaccttatgtaacattcaaggctaaacggaaacttttattttgttgatgcggagcattgtccgaaacaagcgctattggcaaaacttacccacagaaacctactcatgagtcagctttcaagaacttgtgatgacaactttttatctggaataaatttgagattgaaggttttgtattgcattgctcactagaagttccatacttgagtcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="72752" stop="76100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73052" g_stop="73126" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73127" i_stop="75063" i_length="1937">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75064" g_stop="75800" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="811" r_length="736" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E542174" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73052" e_stop="73126"/>
          <exon e_start="75064" e_stop="75800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCAAGAAGAACCCTTTTTCACTTAGTTCGATCTCAAGCGAATCTACTAAAATCCACCAATTTTCATTCAGGTTCGTGTTTAATTGAATCAAGCAGTTTCATTTCTGTATAATTTATGGTTTCTGTTTCAATTTTCTGTTGTATCTGTATGTAAAATTGTTGGGTTTCAAAGAAAGTGAAAGAAAGTAACACCCTTTTGTTAATCTTGTTAAAAAGCTGTGTAATTTAATGCTATTGTTTTTTTATCAAATTGAAATAAGGTCCAATGTCCCTTCAGCTGGTGATGGGTGTTATATGTTACCTGTAGTGAGGAATCTAGTATTTGAAGTTTATGAGTTCGACTAGTTAGAAGATGACACGACATGACATGTTTTCGACTTATTGATCACACGACATTAGATAGGAGAGTATCGAGGTGGCAGATTAGTATAGAAGGTTAGAATTAATTGAGTATTGTCTCGTTTTGTAGTTTGGGGCTCAATACTGATTTCTCTTTGCATATAGGTACTCTGGTAGTGCAAGTAATGTTCTCAAAGTTTCTTGTCCTCTGATTTTGGGTAATACTTGATGTTTCGCGTGTGCTTTAGTTTTCACATTGTTTTGCTCTGAATGATATGTTATGCTTCTCTATTATATGTTGCGTCTTATTTACTGTTATATTCTCTTTTTCAAACTACTTTGTTATATGTTACTTGAGCTGAGGGTCTTGCTGTTATTTTTGTTGAGTTTCTTCAACGACATCAAGTTAATACTACAATAGTAATGGTGTTCACAGTTAATTATTATATAGATACTTAGTTGATGTCTATGTTAACAATTGTAAAAAAAAAGAAAGAAGATATTTAGTGGATTTCTCAGGGTTAAAGCAAGACCTACTGGATTCTGTGATATATATATATATATAGAATAGTGGGTCCATTGGTACTATGACCACAGTTACTTAAAATATTGGATTTTCCTATCAATGGGAAATTGGAATAGCATAATTGTTATACAGTGCCAGCTTTTGATTACCTGAGTTGGGAGAAAAAGTGGATTGCTTAATGTGGCAAGTAAGCAGGACAACATTGTGGACATCCGTAGAAAATGTCTTTCAGGGGTTAGTATAGAAGAAACATATAGATTTATAGCTCTAAGGTCTTGGGAAAGAGTACGCAATGACCGCCATCTTCATGTTATACACACTTTTCAGTACTGATCCACTGAGACAGGTTAACAGTATTCTGTTATCTTTTTGATCCCTCGACCCTCCCTGTTGTAATGTGTTGATCATGAATCTAGTTTCCGCATTACCAGATGTTAGACTCCTTTTCTAGTTTTCTTCCATAATTTTTGCATTTGAGAATTGGGACAAATGAATGAGTGTTACGTATGTTGTTATTCATATTAGGACCTTAAAACTTTTCCAGGTGAAACATATTTGCTAAAAAGGAAAACATAATTCTTTGTTGTTAAACTCTAAAGGAATGGAATTTCTGTTTTACTAAAGTTCATTGTTGTAGATTCTTCGCCCTATAACTTTCTTTTTTCAGTTGCTAAGCTAAATTTTCTGCTTTCAGGTTGTCGGATGTTGTACTGTAGCCTTTTTCTTTTGATGAAATCACATATTTTGGCCTTCCTCAGCTTTTTCTGTCTTTCCTTCATAAAATCCGTTTACATTAGAATGTCAAATTTTAGCCAATAATATGCAAATCTTCAGATCAAATGATTGACGGCTTATTTTAGCTGCAACATCCCATCCATTTTGCAGGGAACAATCTTGTATTTAATGAAGTAAGAATTAACAAAGTATGGTGCAACTGTTTATCAGGATAAATATTGAACATTCATGTATTATGGTGGTAAAATCCTAGTAAATACATGAAAGAAATCACAATATATTGGAAGAACTTTTTGCTGTATTGCTTCTACTATCTGCATCTCTTTTGTTTATGCAAGTTTATTTTATGACTTGTTCCTAATGATTGTCCTCAAGCTCTTTGCTCATTATTTCCCAATACCTTTTCAGGTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCT-AACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTCAGCTTTCAAGAACTTGTGATGACAACTTTTTATCTGGAAT-AATTTGAGATTTGAAGGTTTTGTATTGCATTGCTCACTAGAAGTTCCAATACTTGAGTCTTGG</genome_strand>
        <mrna_strand>CAATGGCAAGAAGAACCCTTTTTCACTTAGTTCGATCTCAAGCGAATCTACTAAAATCCACCAATTTTCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTTAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAAACAAGCGCTATTGGCAAAACTTA-CCCACAGAAACCTACTCATGAGTCAGCTTTCAAGAACTTGTGATGACAACTTTTTATCTGGAATAAATTTGAGA-TTGAAGGTTTTGTATTGCATTGCTCACTAGAAGTTCC-ATACTTGAGTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408178" ref_strand="+" ref_description="SGN-E408178 [PPI-10-G16]">
      <seq>aatggcaagacgaaccctttttcacttggttcgatctcaagcaaatattctaaaatccaccaattttcattcaggtggtcatctggctagttatggaactaggtcacttgtcagtggtaccaaaactgaccctagtcgtgtgacacatctagctgctattcgtaaaaggtggctatcacagtctgcaacatcacaagacgacaacaagatcagcatagggcctcgcaaaggaggagaaggaggaaatgatgaaaaggatggtggagttgtctactatggtcctatctcaaacacgataaaaaatgtgaagcttctgtccctttcaacctgttgcctctctgtgtctttaggccctgtcgtaaccttcatgtcatctactgattcgaatgtgatactcaagggagcagttgcatctactgttatattcttcagtgcttctactaccgctgcgcttcactggtttgtgagtccttatattcataaactgagatggaagccaggttcagattcttttgaagtggagatgatgtcttggctggcaacttttatgccaaagacgattaagtttgcagatatcaagcatcctgacaccaatagaccttacgtaacattcaaggctaatggaaacttctattttgttgatgccgagcattgtcccaacaaggcgctattggcaaaacttaccccacagaaacctactcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="72753" stop="75993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73053" g_stop="73126" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73127" i_stop="75063" i_length="1937">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.940" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75064" g_stop="75693" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="704" r_length="630" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E408178" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73053" e_stop="73126"/>
          <exon e_start="75064" e_stop="75693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCAAGAAGAACCCTTTTTCACTTAGTTCGATCTCAAGCGAATCTACTAAAATCCACCAATTTTCATTCAGGTTCGTGTTTAATTGAATCAAGCAGTTTCATTTCTGTATAATTTATGGTTTCTGTTTCAATTTTCTGTTGTATCTGTATGTAAAATTGTTGGGTTTCAAAGAAAGTGAAAGAAAGTAACACCCTTTTGTTAATCTTGTTAAAAAGCTGTGTAATTTAATGCTATTGTTTTTTTATCAAATTGAAATAAGGTCCAATGTCCCTTCAGCTGGTGATGGGTGTTATATGTTACCTGTAGTGAGGAATCTAGTATTTGAAGTTTATGAGTTCGACTAGTTAGAAGATGACACGACATGACATGTTTTCGACTTATTGATCACACGACATTAGATAGGAGAGTATCGAGGTGGCAGATTAGTATAGAAGGTTAGAATTAATTGAGTATTGTCTCGTTTTGTAGTTTGGGGCTCAATACTGATTTCTCTTTGCATATAGGTACTCTGGTAGTGCAAGTAATGTTCTCAAAGTTTCTTGTCCTCTGATTTTGGGTAATACTTGATGTTTCGCGTGTGCTTTAGTTTTCACATTGTTTTGCTCTGAATGATATGTTATGCTTCTCTATTATATGTTGCGTCTTATTTACTGTTATATTCTCTTTTTCAAACTACTTTGTTATATGTTACTTGAGCTGAGGGTCTTGCTGTTATTTTTGTTGAGTTTCTTCAACGACATCAAGTTAATACTACAATAGTAATGGTGTTCACAGTTAATTATTATATAGATACTTAGTTGATGTCTATGTTAACAATTGTAAAAAAAAAGAAAGAAGATATTTAGTGGATTTCTCAGGGTTAAAGCAAGACCTACTGGATTCTGTGATATATATATATATATAGAATAGTGGGTCCATTGGTACTATGACCACAGTTACTTAAAATATTGGATTTTCCTATCAATGGGAAATTGGAATAGCATAATTGTTATACAGTGCCAGCTTTTGATTACCTGAGTTGGGAGAAAAAGTGGATTGCTTAATGTGGCAAGTAAGCAGGACAACATTGTGGACATCCGTAGAAAATGTCTTTCAGGGGTTAGTATAGAAGAAACATATAGATTTATAGCTCTAAGGTCTTGGGAAAGAGTACGCAATGACCGCCATCTTCATGTTATACACACTTTTCAGTACTGATCCACTGAGACAGGTTAACAGTATTCTGTTATCTTTTTGATCCCTCGACCCTCCCTGTTGTAATGTGTTGATCATGAATCTAGTTTCCGCATTACCAGATGTTAGACTCCTTTTCTAGTTTTCTTCCATAATTTTTGCATTTGAGAATTGGGACAAATGAATGAGTGTTACGTATGTTGTTATTCATATTAGGACCTTAAAACTTTTCCAGGTGAAACATATTTGCTAAAAAGGAAAACATAATTCTTTGTTGTTAAACTCTAAAGGAATGGAATTTCTGTTTTACTAAAGTTCATTGTTGTAGATTCTTCGCCCTATAACTTTCTTTTTTCAGTTGCTAAGCTAAATTTTCTGCTTTCAGGTTGTCGGATGTTGTACTGTAGCCTTTTTCTTTTGATGAAATCACATATTTTGGCCTTCCTCAGCTTTTTCTGTCTTTCCTTCATAAAATCCGTTTACATTAGAATGTCAAATTTTAGCCAATAATATGCAAATCTTCAGATCAAATGATTGACGGCTTATTTTAGCTGCAACATCCCATCCATTTTGCAGGGAACAATCTTGTATTTAATGAAGTAAGAATTAACAAAGTATGGTGCAACTGTTTATCAGGATAAATATTGAACATTCATGTATTATGGTGGTAAAATCCTAGTAAATACATGAAAGAAATCACAATATATTGGAAGAACTTTTTGCTGTATTGCTTCTACTATCTGCATCTCTTTTGTTTATGCAAGTTTATTTTATGACTTGTTCCTAATGATTGTCCTCAAGCTCTTTGCTCATTATTTCCCAATACCTTTTCAGGTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATG</genome_strand>
        <mrna_strand>AATGGCAAGACGAACCCTTTTTCACTTGGTTCGATCTCAAGCAAATATTCTAAAATCCACCAATTTTCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCATCTGGCTAGTTATGGAACTAGGTCACTTGTCAGTGGTACCAAAACTGACCCTAGTCGTGTGACACATCTAGCTGCTATTCGTAAAAGGTGGCTATCACAGTCTGCAACATCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGTGGAGTTGTCTACTATGGTCCTATCTCAAACACGATAAAAAATGTGAAGCTTCTGTCCCTTTCAACCTGTTGCCTCTCTGTGTCTTTAGGCCCTGTCGTAACCTTCATGTCATCTACTGATTCGAATGTGATACTCAAGGGAGCAGTTGCATCTACTGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCATAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTGGCAACTTTTATGCCAAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTACGTAACATTCAAGGCTAATGGAAACTTCTATTTTGTTGATGCCGAGCATTGTCCCAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699911" ref_strand="+" ref_description="SGN-E699911 [FA11CC07]">
      <seq>gcaagaagaaccctttttcacttagttcgatctcaagcgaatctactaaaatccaccaattttcattcaggtggtcatctggctagttttggaactaggtcacttgtcagtggtaccaaacctgaccctagttgtgtgacacatctagctgctatccgtaaaaggtggctatcacagtctgcaacagcacaagacgacaacaagatcagcatagggcctcgcaaaggaggagaaggaggaaatgatgaaaaggatggcggagttgtctactatggtcctatctcaaacacaataaagaatgtgaagcttctgtccctttcaacatgttgcctttctgtgtctttaggccctgtcataaccttcatgacatctactgattcaaatgtgatactaaagggagcagttgcatctaccgttatattcttcagtgcttctactaccgctgcgcttcactggtttgtgagtccttatattcacaaactgagatggaagccaggttcagattcttttgaagtggagatgatgtcttggcttgcaacttttatgccgaagacgattaagtttgcagatatcaagcatcctgacaccaatagaccttatgtaacattcaaggctaacggaaacttttattttgttgatgcggagcattgtccgaacaaggcgctattggcaaaacttaccccacagaaacctactcatgagtcagctttcaagaacttgtgatgacaactttttatctggaataatttgagatttgaaggttttgtattgcattgctcactaaaagttccaatacttgagtcttggatatatataagcctcagttggttgtcaatttttcaattattataacattgattgtcttaaaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="72757" stop="76159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73057" g_stop="73126" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73127" i_stop="75063" i_length="1937">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75064" g_stop="75866" g_length="803"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="873" r_length="803" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E699911" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73057" e_stop="73126"/>
          <exon e_start="75064" e_stop="75866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAAGAACCCTTTTTCACTTAGTTCGATCTCAAGCGAATCTACTAAAATCCACCAATTTTCATTCAGGTTCGTGTTTAATTGAATCAAGCAGTTTCATTTCTGTATAATTTATGGTTTCTGTTTCAATTTTCTGTTGTATCTGTATGTAAAATTGTTGGGTTTCAAAGAAAGTGAAAGAAAGTAACACCCTTTTGTTAATCTTGTTAAAAAGCTGTGTAATTTAATGCTATTGTTTTTTTATCAAATTGAAATAAGGTCCAATGTCCCTTCAGCTGGTGATGGGTGTTATATGTTACCTGTAGTGAGGAATCTAGTATTTGAAGTTTATGAGTTCGACTAGTTAGAAGATGACACGACATGACATGTTTTCGACTTATTGATCACACGACATTAGATAGGAGAGTATCGAGGTGGCAGATTAGTATAGAAGGTTAGAATTAATTGAGTATTGTCTCGTTTTGTAGTTTGGGGCTCAATACTGATTTCTCTTTGCATATAGGTACTCTGGTAGTGCAAGTAATGTTCTCAAAGTTTCTTGTCCTCTGATTTTGGGTAATACTTGATGTTTCGCGTGTGCTTTAGTTTTCACATTGTTTTGCTCTGAATGATATGTTATGCTTCTCTATTATATGTTGCGTCTTATTTACTGTTATATTCTCTTTTTCAAACTACTTTGTTATATGTTACTTGAGCTGAGGGTCTTGCTGTTATTTTTGTTGAGTTTCTTCAACGACATCAAGTTAATACTACAATAGTAATGGTGTTCACAGTTAATTATTATATAGATACTTAGTTGATGTCTATGTTAACAATTGTAAAAAAAAAGAAAGAAGATATTTAGTGGATTTCTCAGGGTTAAAGCAAGACCTACTGGATTCTGTGATATATATATATATATAGAATAGTGGGTCCATTGGTACTATGACCACAGTTACTTAAAATATTGGATTTTCCTATCAATGGGAAATTGGAATAGCATAATTGTTATACAGTGCCAGCTTTTGATTACCTGAGTTGGGAGAAAAAGTGGATTGCTTAATGTGGCAAGTAAGCAGGACAACATTGTGGACATCCGTAGAAAATGTCTTTCAGGGGTTAGTATAGAAGAAACATATAGATTTATAGCTCTAAGGTCTTGGGAAAGAGTACGCAATGACCGCCATCTTCATGTTATACACACTTTTCAGTACTGATCCACTGAGACAGGTTAACAGTATTCTGTTATCTTTTTGATCCCTCGACCCTCCCTGTTGTAATGTGTTGATCATGAATCTAGTTTCCGCATTACCAGATGTTAGACTCCTTTTCTAGTTTTCTTCCATAATTTTTGCATTTGAGAATTGGGACAAATGAATGAGTGTTACGTATGTTGTTATTCATATTAGGACCTTAAAACTTTTCCAGGTGAAACATATTTGCTAAAAAGGAAAACATAATTCTTTGTTGTTAAACTCTAAAGGAATGGAATTTCTGTTTTACTAAAGTTCATTGTTGTAGATTCTTCGCCCTATAACTTTCTTTTTTCAGTTGCTAAGCTAAATTTTCTGCTTTCAGGTTGTCGGATGTTGTACTGTAGCCTTTTTCTTTTGATGAAATCACATATTTTGGCCTTCCTCAGCTTTTTCTGTCTTTCCTTCATAAAATCCGTTTACATTAGAATGTCAAATTTTAGCCAATAATATGCAAATCTTCAGATCAAATGATTGACGGCTTATTTTAGCTGCAACATCCCATCCATTTTGCAGGGAACAATCTTGTATTTAATGAAGTAAGAATTAACAAAGTATGGTGCAACTGTTTATCAGGATAAATATTGAACATTCATGTATTATGGTGGTAAAATCCTAGTAAATACATGAAAGAAATCACAATATATTGGAAGAACTTTTTGCTGTATTGCTTCTACTATCTGCATCTCTTTTGTTTATGCAAGTTTATTTTATGACTTGTTCCTAATGATTGTCCTCAAGCTCTTTGCTCATTATTTCCCAATACCTTTTCAGGTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTCAGCTTTCAAGAACTTGTGATGACAACTTTTTATCTGGAATAATTTGAGATTTGAAGGTTTTGTATTGCATTGCTCACTAGAAGTTCCAATACTTGAGTCTTGGATATATATAAGCCTCAGTTGGTTGTCAATTTTTCAATTATTATAACATTGATTGTCTTATCTCTCT</genome_strand>
        <mrna_strand>GCAAGAAGAACCCTTTTTCACTTAGTTCGATCTCAAGCGAATCTACTAAAATCCACCAATTTTCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTCAGCTTTCAAGAACTTGTGATGACAACTTTTTATCTGGAATAATTTGAGATTTGAAGGTTTTGTATTGCATTGCTCACTAAAAGTTCCAATACTTGAGTCTTGGATATATATAAGCCTCAGTTGGTTGTCAATTTTTCAATTATTATAACATTGATTGTCTTAAAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711890" ref_strand="+" ref_description="SGN-E711890 [FB03BB12]">
      <seq>gcaagaagaaccccttttcacttagttcgatctcaagcgaatctactaaaatccaccaattttcattcaggtggtcatctggctagttttggaactaggtcacttgtcagtggtaccaaacctgaccctagttgtgtgacacatctagctgctatccgtaaaaggtggctatcacagtctgcaacagcacaagacgacaacaagatcagcatagggcctcgcaaaggaggagaaggaggaaatgatgaaaaggatggcggagttgtctactatggtcctatctcaaacacaataaagaatgtgaagcttctgtccctttcaacatgttgcctttctgtgtctttaggccctgtcataaccttcatgacatctactgattcaaatgtgatactaaagggagcagttgcatctaccgttatattcttcagtgcttctactaccgctgcgcttcactggtttgtgagtccttatattcacaaactgagatggaagccaggttcagattcttttgaagtggagatgatgtcttggcttgcaacttttatgccgaagacgattaagtttgcagatatcaagcatcctgacaccaatagaccttatgtaacattcaaggctaacggaaacttttattttgttgatgcggagcattgtccgaacaaggcgctattggcaaaacttaccccacagaaacctactcatgagtcagctttcaagaacttgtgatgacaactttttatctggaataatttgagatttgaaggccttgtattgcattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="72757" stop="76070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73057" g_stop="73126" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73127" i_stop="75063" i_length="1937">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75064" g_stop="75770" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="777" r_length="707" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E711890" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73057" e_stop="73126"/>
          <exon e_start="75064" e_stop="75770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAAGAACCCTTTTTCACTTAGTTCGATCTCAAGCGAATCTACTAAAATCCACCAATTTTCATTCAGGTTCGTGTTTAATTGAATCAAGCAGTTTCATTTCTGTATAATTTATGGTTTCTGTTTCAATTTTCTGTTGTATCTGTATGTAAAATTGTTGGGTTTCAAAGAAAGTGAAAGAAAGTAACACCCTTTTGTTAATCTTGTTAAAAAGCTGTGTAATTTAATGCTATTGTTTTTTTATCAAATTGAAATAAGGTCCAATGTCCCTTCAGCTGGTGATGGGTGTTATATGTTACCTGTAGTGAGGAATCTAGTATTTGAAGTTTATGAGTTCGACTAGTTAGAAGATGACACGACATGACATGTTTTCGACTTATTGATCACACGACATTAGATAGGAGAGTATCGAGGTGGCAGATTAGTATAGAAGGTTAGAATTAATTGAGTATTGTCTCGTTTTGTAGTTTGGGGCTCAATACTGATTTCTCTTTGCATATAGGTACTCTGGTAGTGCAAGTAATGTTCTCAAAGTTTCTTGTCCTCTGATTTTGGGTAATACTTGATGTTTCGCGTGTGCTTTAGTTTTCACATTGTTTTGCTCTGAATGATATGTTATGCTTCTCTATTATATGTTGCGTCTTATTTACTGTTATATTCTCTTTTTCAAACTACTTTGTTATATGTTACTTGAGCTGAGGGTCTTGCTGTTATTTTTGTTGAGTTTCTTCAACGACATCAAGTTAATACTACAATAGTAATGGTGTTCACAGTTAATTATTATATAGATACTTAGTTGATGTCTATGTTAACAATTGTAAAAAAAAAGAAAGAAGATATTTAGTGGATTTCTCAGGGTTAAAGCAAGACCTACTGGATTCTGTGATATATATATATATATAGAATAGTGGGTCCATTGGTACTATGACCACAGTTACTTAAAATATTGGATTTTCCTATCAATGGGAAATTGGAATAGCATAATTGTTATACAGTGCCAGCTTTTGATTACCTGAGTTGGGAGAAAAAGTGGATTGCTTAATGTGGCAAGTAAGCAGGACAACATTGTGGACATCCGTAGAAAATGTCTTTCAGGGGTTAGTATAGAAGAAACATATAGATTTATAGCTCTAAGGTCTTGGGAAAGAGTACGCAATGACCGCCATCTTCATGTTATACACACTTTTCAGTACTGATCCACTGAGACAGGTTAACAGTATTCTGTTATCTTTTTGATCCCTCGACCCTCCCTGTTGTAATGTGTTGATCATGAATCTAGTTTCCGCATTACCAGATGTTAGACTCCTTTTCTAGTTTTCTTCCATAATTTTTGCATTTGAGAATTGGGACAAATGAATGAGTGTTACGTATGTTGTTATTCATATTAGGACCTTAAAACTTTTCCAGGTGAAACATATTTGCTAAAAAGGAAAACATAATTCTTTGTTGTTAAACTCTAAAGGAATGGAATTTCTGTTTTACTAAAGTTCATTGTTGTAGATTCTTCGCCCTATAACTTTCTTTTTTCAGTTGCTAAGCTAAATTTTCTGCTTTCAGGTTGTCGGATGTTGTACTGTAGCCTTTTTCTTTTGATGAAATCACATATTTTGGCCTTCCTCAGCTTTTTCTGTCTTTCCTTCATAAAATCCGTTTACATTAGAATGTCAAATTTTAGCCAATAATATGCAAATCTTCAGATCAAATGATTGACGGCTTATTTTAGCTGCAACATCCCATCCATTTTGCAGGGAACAATCTTGTATTTAATGAAGTAAGAATTAACAAAGTATGGTGCAACTGTTTATCAGGATAAATATTGAACATTCATGTATTATGGTGGTAAAATCCTAGTAAATACATGAAAGAAATCACAATATATTGGAAGAACTTTTTGCTGTATTGCTTCTACTATCTGCATCTCTTTTGTTTATGCAAGTTTATTTTATGACTTGTTCCTAATGATTGTCCTCAAGCTCTTTGCTCATTATTTCCCAATACCTTTTCAGGTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTCAGCTTTCAAGAACTTGTGATGACAACTTTTTATCTGGAATAATTTGAGATTTGAAGGTTTTGTATTGCATTGC</genome_strand>
        <mrna_strand>GCAAGAAGAACCCCTTTTCACTTAGTTCGATCTCAAGCGAATCTACTAAAATCCACCAATTTTCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTCAGCTTTCAAGAACTTGTGATGACAACTTTTTATCTGGAATAATTTGAGATTTGAAGGCCTTGTATTGCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327446" ref_strand="+" ref_description="SGN-E327446 [cTOC-19-H1]">
      <seq>aagaaccctttttcacttagttcgatctcaagcgaatctactaaaatccaccaattttcattcaggtggtcatctggctagttttggaactaggtcacttgtcagtggtaccaaacctgaccctagttgtgtgacacatctagctgctatccgtaaaaggtggctatcacagtctgcaacagcacaagacgacaacaagatcagcatagggcctcgcaaaggaggagaaggaggaaatgatgaaaaggatggcggagttgtctactatggtcctatctcaaacacaataaagaatgtgaagcttctgtccctttcaacatgttgcctttctgtgtctttaggccctgtcataaccttcatgacatctactgattcaaatgtgatactaaagggagcagttgcatctaccgttatattcttcagtgcttctactaccgctgcgcttcactggtttgtgagtccttatattcacaaactgagatggaagccaggttcagattcttttgaagtggagatgatgtcttggcttgcaacttttatgccgaagacgattaagtttgcagatatcaagcatcctgacaccaatagaccttatgtaacattcaaggctaacggaaacttttattttgttgatgcggagcattgtccgaacnangcgctattgncaaaacttaccccacagaaacctactcatgagtcagctttcaagaacttgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="72762" stop="76017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73062" g_stop="73126" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73127" i_stop="75063" i_length="1937">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75064" g_stop="75717" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="719" r_length="654" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E327446" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73062" e_stop="73126"/>
          <exon e_start="75064" e_stop="75717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACCCTTTTTCACTTAGTTCGATCTCAAGCGAATCTACTAAAATCCACCAATTTTCATTCAGGTTCGTGTTTAATTGAATCAAGCAGTTTCATTTCTGTATAATTTATGGTTTCTGTTTCAATTTTCTGTTGTATCTGTATGTAAAATTGTTGGGTTTCAAAGAAAGTGAAAGAAAGTAACACCCTTTTGTTAATCTTGTTAAAAAGCTGTGTAATTTAATGCTATTGTTTTTTTATCAAATTGAAATAAGGTCCAATGTCCCTTCAGCTGGTGATGGGTGTTATATGTTACCTGTAGTGAGGAATCTAGTATTTGAAGTTTATGAGTTCGACTAGTTAGAAGATGACACGACATGACATGTTTTCGACTTATTGATCACACGACATTAGATAGGAGAGTATCGAGGTGGCAGATTAGTATAGAAGGTTAGAATTAATTGAGTATTGTCTCGTTTTGTAGTTTGGGGCTCAATACTGATTTCTCTTTGCATATAGGTACTCTGGTAGTGCAAGTAATGTTCTCAAAGTTTCTTGTCCTCTGATTTTGGGTAATACTTGATGTTTCGCGTGTGCTTTAGTTTTCACATTGTTTTGCTCTGAATGATATGTTATGCTTCTCTATTATATGTTGCGTCTTATTTACTGTTATATTCTCTTTTTCAAACTACTTTGTTATATGTTACTTGAGCTGAGGGTCTTGCTGTTATTTTTGTTGAGTTTCTTCAACGACATCAAGTTAATACTACAATAGTAATGGTGTTCACAGTTAATTATTATATAGATACTTAGTTGATGTCTATGTTAACAATTGTAAAAAAAAAGAAAGAAGATATTTAGTGGATTTCTCAGGGTTAAAGCAAGACCTACTGGATTCTGTGATATATATATATATATAGAATAGTGGGTCCATTGGTACTATGACCACAGTTACTTAAAATATTGGATTTTCCTATCAATGGGAAATTGGAATAGCATAATTGTTATACAGTGCCAGCTTTTGATTACCTGAGTTGGGAGAAAAAGTGGATTGCTTAATGTGGCAAGTAAGCAGGACAACATTGTGGACATCCGTAGAAAATGTCTTTCAGGGGTTAGTATAGAAGAAACATATAGATTTATAGCTCTAAGGTCTTGGGAAAGAGTACGCAATGACCGCCATCTTCATGTTATACACACTTTTCAGTACTGATCCACTGAGACAGGTTAACAGTATTCTGTTATCTTTTTGATCCCTCGACCCTCCCTGTTGTAATGTGTTGATCATGAATCTAGTTTCCGCATTACCAGATGTTAGACTCCTTTTCTAGTTTTCTTCCATAATTTTTGCATTTGAGAATTGGGACAAATGAATGAGTGTTACGTATGTTGTTATTCATATTAGGACCTTAAAACTTTTCCAGGTGAAACATATTTGCTAAAAAGGAAAACATAATTCTTTGTTGTTAAACTCTAAAGGAATGGAATTTCTGTTTTACTAAAGTTCATTGTTGTAGATTCTTCGCCCTATAACTTTCTTTTTTCAGTTGCTAAGCTAAATTTTCTGCTTTCAGGTTGTCGGATGTTGTACTGTAGCCTTTTTCTTTTGATGAAATCACATATTTTGGCCTTCCTCAGCTTTTTCTGTCTTTCCTTCATAAAATCCGTTTACATTAGAATGTCAAATTTTAGCCAATAATATGCAAATCTTCAGATCAAATGATTGACGGCTTATTTTAGCTGCAACATCCCATCCATTTTGCAGGGAACAATCTTGTATTTAATGAAGTAAGAATTAACAAAGTATGGTGCAACTGTTTATCAGGATAAATATTGAACATTCATGTATTATGGTGGTAAAATCCTAGTAAATACATGAAAGAAATCACAATATATTGGAAGAACTTTTTGCTGTATTGCTTCTACTATCTGCATCTCTTTTGTTTATGCAAGTTTATTTTATGACTTGTTCCTAATGATTGTCCTCAAGCTCTTTGCTCATTATTTCCCAATACCTTTTCAGGTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTCAGCTTTCAAGAACTTGTGAT</genome_strand>
        <mrna_strand>AAGAACCCTTTTTCACTTAGTTCGATCTCAAGCGAATCTACTAAAATCCACCAATTTTCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACNANGCGCTATTGNCAAAACTTACCCCACAGAAACCTACTCATGAGTCAGCTTTCAAGAACTTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243903" ref_strand="+" ref_description="SGN-E243903 [cLED-35-F15]">
      <seq>tttttcacttagttcgatctcaagcgaatctactaaaatccaccaattttcattcaggtggtcatctggctagttttggaactaggtcacttgtcagtggtaccaaacctgaccctagttgtgtgacacatctagctgctatccgtaaaaggtggctatcacagtctgcaacagcacaagacgacaacaagatcagcatagggcctcgcaaaggaggagaaggaggaaatgatgaaaaggatggcggagttgtctactatggtcctatctcaaacacaataaagaatgtgaagcttctgtccctttcaacatgttgcctttctgtgtctttaggccctgtcataaccttcatgacatctactgattcaaatgtgatactaaagggagcagttgcatctaccgttatattcttcagtgcttctactaccgctgcgcttcactggtttgtgagtccttatattcacaaactgagatggaagccaggttcagattcttttgaagtggagatgatgtcttggcttgcaacttttatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="72770" stop="75840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73070" g_stop="73126" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73127" i_stop="75063" i_length="1937">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75064" g_stop="75540" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="534" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E243903" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73070" e_stop="73126"/>
          <exon e_start="75064" e_stop="75540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCACTTAGTTCGATCTCAAGCGAATCTACTAAAATCCACCAATTTTCATTCAGGTTCGTGTTTAATTGAATCAAGCAGTTTCATTTCTGTATAATTTATGGTTTCTGTTTCAATTTTCTGTTGTATCTGTATGTAAAATTGTTGGGTTTCAAAGAAAGTGAAAGAAAGTAACACCCTTTTGTTAATCTTGTTAAAAAGCTGTGTAATTTAATGCTATTGTTTTTTTATCAAATTGAAATAAGGTCCAATGTCCCTTCAGCTGGTGATGGGTGTTATATGTTACCTGTAGTGAGGAATCTAGTATTTGAAGTTTATGAGTTCGACTAGTTAGAAGATGACACGACATGACATGTTTTCGACTTATTGATCACACGACATTAGATAGGAGAGTATCGAGGTGGCAGATTAGTATAGAAGGTTAGAATTAATTGAGTATTGTCTCGTTTTGTAGTTTGGGGCTCAATACTGATTTCTCTTTGCATATAGGTACTCTGGTAGTGCAAGTAATGTTCTCAAAGTTTCTTGTCCTCTGATTTTGGGTAATACTTGATGTTTCGCGTGTGCTTTAGTTTTCACATTGTTTTGCTCTGAATGATATGTTATGCTTCTCTATTATATGTTGCGTCTTATTTACTGTTATATTCTCTTTTTCAAACTACTTTGTTATATGTTACTTGAGCTGAGGGTCTTGCTGTTATTTTTGTTGAGTTTCTTCAACGACATCAAGTTAATACTACAATAGTAATGGTGTTCACAGTTAATTATTATATAGATACTTAGTTGATGTCTATGTTAACAATTGTAAAAAAAAAGAAAGAAGATATTTAGTGGATTTCTCAGGGTTAAAGCAAGACCTACTGGATTCTGTGATATATATATATATATAGAATAGTGGGTCCATTGGTACTATGACCACAGTTACTTAAAATATTGGATTTTCCTATCAATGGGAAATTGGAATAGCATAATTGTTATACAGTGCCAGCTTTTGATTACCTGAGTTGGGAGAAAAAGTGGATTGCTTAATGTGGCAAGTAAGCAGGACAACATTGTGGACATCCGTAGAAAATGTCTTTCAGGGGTTAGTATAGAAGAAACATATAGATTTATAGCTCTAAGGTCTTGGGAAAGAGTACGCAATGACCGCCATCTTCATGTTATACACACTTTTCAGTACTGATCCACTGAGACAGGTTAACAGTATTCTGTTATCTTTTTGATCCCTCGACCCTCCCTGTTGTAATGTGTTGATCATGAATCTAGTTTCCGCATTACCAGATGTTAGACTCCTTTTCTAGTTTTCTTCCATAATTTTTGCATTTGAGAATTGGGACAAATGAATGAGTGTTACGTATGTTGTTATTCATATTAGGACCTTAAAACTTTTCCAGGTGAAACATATTTGCTAAAAAGGAAAACATAATTCTTTGTTGTTAAACTCTAAAGGAATGGAATTTCTGTTTTACTAAAGTTCATTGTTGTAGATTCTTCGCCCTATAACTTTCTTTTTTCAGTTGCTAAGCTAAATTTTCTGCTTTCAGGTTGTCGGATGTTGTACTGTAGCCTTTTTCTTTTGATGAAATCACATATTTTGGCCTTCCTCAGCTTTTTCTGTCTTTCCTTCATAAAATCCGTTTACATTAGAATGTCAAATTTTAGCCAATAATATGCAAATCTTCAGATCAAATGATTGACGGCTTATTTTAGCTGCAACATCCCATCCATTTTGCAGGGAACAATCTTGTATTTAATGAAGTAAGAATTAACAAAGTATGGTGCAACTGTTTATCAGGATAAATATTGAACATTCATGTATTATGGTGGTAAAATCCTAGTAAATACATGAAAGAAATCACAATATATTGGAAGAACTTTTTGCTGTATTGCTTCTACTATCTGCATCTCTTTTGTTTATGCAAGTTTATTTTATGACTTGTTCCTAATGATTGTCCTCAAGCTCTTTGCTCATTATTTCCCAATACCTTTTCAGGTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGC</genome_strand>
        <mrna_strand>TTTTTCACTTAGTTCGATCTCAAGCGAATCTACTAAAATCCACCAATTTTCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299956" ref_strand="+" ref_description="SGN-E299956 [cLEW-11-M21]">
      <seq>tttttcacttagttcgatctcaagccgaatctactaaaatccacccaattttcattcaggtggtcatctggctagttttggaactaggtcacttgtcagtggtacccaaacctgaccctagttgtgtgacacatctagctgctatccgtaaaagggggctatcacagtctgcaacagcaccaagacgacaaccaagatcagcatagggcctcgcaaaggaggagaaggaggaaatgatgaaaaggatggcggagttgtctactatggtcctatctcaaacaccaataaagaatgtgaagcttctgtccctttcaaccatgttgcctttctgtgtctttaggccctgtcataaccttcatgaccatctactgattcaaatgtgatacctaaagggagcagttgcatctacccgttatattcttcagtgcttctactaccgctgcgcttcactggtttgtgagtccttatattcaccaactgagatggaagccaggttcagattcttttgaagtggagatgatgtcttggcttgcaacttttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="72770" stop="75839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73070" g_stop="73126" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73127" i_stop="75063" i_length="1937">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.940" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75064" g_stop="75539" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="543" r_length="484" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E299956" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73070" e_stop="73126"/>
          <exon e_start="75064" e_stop="75539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCACTTAGTTCGATCTCAAG-CGAATCTACTAAAATCCAC-CAATTTTCATTCAGGTTCGTGTTTAATTGAATCAAGCAGTTTCATTTCTGTATAATTTATGGTTTCTGTTTCAATTTTCTGTTGTATCTGTATGTAAAATTGTTGGGTTTCAAAGAAAGTGAAAGAAAGTAACACCCTTTTGTTAATCTTGTTAAAAAGCTGTGTAATTTAATGCTATTGTTTTTTTATCAAATTGAAATAAGGTCCAATGTCCCTTCAGCTGGTGATGGGTGTTATATGTTACCTGTAGTGAGGAATCTAGTATTTGAAGTTTATGAGTTCGACTAGTTAGAAGATGACACGACATGACATGTTTTCGACTTATTGATCACACGACATTAGATAGGAGAGTATCGAGGTGGCAGATTAGTATAGAAGGTTAGAATTAATTGAGTATTGTCTCGTTTTGTAGTTTGGGGCTCAATACTGATTTCTCTTTGCATATAGGTACTCTGGTAGTGCAAGTAATGTTCTCAAAGTTTCTTGTCCTCTGATTTTGGGTAATACTTGATGTTTCGCGTGTGCTTTAGTTTTCACATTGTTTTGCTCTGAATGATATGTTATGCTTCTCTATTATATGTTGCGTCTTATTTACTGTTATATTCTCTTTTTCAAACTACTTTGTTATATGTTACTTGAGCTGAGGGTCTTGCTGTTATTTTTGTTGAGTTTCTTCAACGACATCAAGTTAATACTACAATAGTAATGGTGTTCACAGTTAATTATTATATAGATACTTAGTTGATGTCTATGTTAACAATTGTAAAAAAAAAGAAAGAAGATATTTAGTGGATTTCTCAGGGTTAAAGCAAGACCTACTGGATTCTGTGATATATATATATATATAGAATAGTGGGTCCATTGGTACTATGACCACAGTTACTTAAAATATTGGATTTTCCTATCAATGGGAAATTGGAATAGCATAATTGTTATACAGTGCCAGCTTTTGATTACCTGAGTTGGGAGAAAAAGTGGATTGCTTAATGTGGCAAGTAAGCAGGACAACATTGTGGACATCCGTAGAAAATGTCTTTCAGGGGTTAGTATAGAAGAAACATATAGATTTATAGCTCTAAGGTCTTGGGAAAGAGTACGCAATGACCGCCATCTTCATGTTATACACACTTTTCAGTACTGATCCACTGAGACAGGTTAACAGTATTCTGTTATCTTTTTGATCCCTCGACCCTCCCTGTTGTAATGTGTTGATCATGAATCTAGTTTCCGCATTACCAGATGTTAGACTCCTTTTCTAGTTTTCTTCCATAATTTTTGCATTTGAGAATTGGGACAAATGAATGAGTGTTACGTATGTTGTTATTCATATTAGGACCTTAAAACTTTTCCAGGTGAAACATATTTGCTAAAAAGGAAAACATAATTCTTTGTTGTTAAACTCTAAAGGAATGGAATTTCTGTTTTACTAAAGTTCATTGTTGTAGATTCTTCGCCCTATAACTTTCTTTTTTCAGTTGCTAAGCTAAATTTTCTGCTTTCAGGTTGTCGGATGTTGTACTGTAGCCTTTTTCTTTTGATGAAATCACATATTTTGGCCTTCCTCAGCTTTTTCTGTCTTTCCTTCATAAAATCCGTTTACATTAGAATGTCAAATTTTAGCCAATAATATGCAAATCTTCAGATCAAATGATTGACGGCTTATTTTAGCTGCAACATCCCATCCATTTTGCAGGGAACAATCTTGTATTTAATGAAGTAAGAATTAACAAAGTATGGTGCAACTGTTTATCAGGATAAATATTGAACATTCATGTATTATGGTGGTAAAATCCTAGTAAATACATGAAAGAAATCACAATATATTGGAAGAACTTTTTGCTGTATTGCTTCTACTATCTGCATCTCTTTTGTTTATGCAAGTTTATTTTATGACTTGTTCCTAATGATTGTCCTCAAGCTCTTTGCTCATTATTTCCCAATACCTTTTCAGGTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTA-CCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCA-CAAGACGACAA-CAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACA-CAATAAAGAATGTGAAGCTTCTGTCCCTTTCAA-CATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGA-CATCTACTGATTCAAATGTGATA-CTAAAGGGAGCAGTTGCATCTA-CCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATG</genome_strand>
        <mrna_strand>TTTTTCACTTAGTTCGATCTCAAGCCGAATCTACTAAAATCCACCCAATTTTCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGGGGCTATCACAGTCTGCAACAGCACCAAGACGACAACCAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACCAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACCATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACCATCTACTGATTCAAATGTGATACCTAAAGGGAGCAGTTGCATCTACCCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACCAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334881" ref_strand="+" ref_description="SGN-E334881 [cTOE-3-B6]">
      <seq>ttagttcgatctcaagcgaatctactaaaatccaccaattttcattcaggtggtcatctggctagttttggaactaggtcacttgtcagtggtaccaaacctgaccctagttgtgtgacacatctagctgctatccgtaaaaggtggctatcacagtctgcaacagcacaagacgacgacaagatcagcatagggcctcgcaaaggaggagaaggaggaaatgatgaaaaggatggcggagttgtctactatggtcctatctcaaacacaataaagaatgtgaagcttctgtccctttcaacatgttgcctttctgtgtctttaggccctgtcataaccttcatgacatctactgattcaaatgtgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="72778" stop="75684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73078" g_stop="73126" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73127" i_stop="75063" i_length="1937">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75064" g_stop="75384" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="370" r_length="321" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E334881" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73078" e_stop="73126"/>
          <exon e_start="75064" e_stop="75384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTCGATCTCAAGCGAATCTACTAAAATCCACCAATTTTCATTCAGGTTCGTGTTTAATTGAATCAAGCAGTTTCATTTCTGTATAATTTATGGTTTCTGTTTCAATTTTCTGTTGTATCTGTATGTAAAATTGTTGGGTTTCAAAGAAAGTGAAAGAAAGTAACACCCTTTTGTTAATCTTGTTAAAAAGCTGTGTAATTTAATGCTATTGTTTTTTTATCAAATTGAAATAAGGTCCAATGTCCCTTCAGCTGGTGATGGGTGTTATATGTTACCTGTAGTGAGGAATCTAGTATTTGAAGTTTATGAGTTCGACTAGTTAGAAGATGACACGACATGACATGTTTTCGACTTATTGATCACACGACATTAGATAGGAGAGTATCGAGGTGGCAGATTAGTATAGAAGGTTAGAATTAATTGAGTATTGTCTCGTTTTGTAGTTTGGGGCTCAATACTGATTTCTCTTTGCATATAGGTACTCTGGTAGTGCAAGTAATGTTCTCAAAGTTTCTTGTCCTCTGATTTTGGGTAATACTTGATGTTTCGCGTGTGCTTTAGTTTTCACATTGTTTTGCTCTGAATGATATGTTATGCTTCTCTATTATATGTTGCGTCTTATTTACTGTTATATTCTCTTTTTCAAACTACTTTGTTATATGTTACTTGAGCTGAGGGTCTTGCTGTTATTTTTGTTGAGTTTCTTCAACGACATCAAGTTAATACTACAATAGTAATGGTGTTCACAGTTAATTATTATATAGATACTTAGTTGATGTCTATGTTAACAATTGTAAAAAAAAAGAAAGAAGATATTTAGTGGATTTCTCAGGGTTAAAGCAAGACCTACTGGATTCTGTGATATATATATATATATAGAATAGTGGGTCCATTGGTACTATGACCACAGTTACTTAAAATATTGGATTTTCCTATCAATGGGAAATTGGAATAGCATAATTGTTATACAGTGCCAGCTTTTGATTACCTGAGTTGGGAGAAAAAGTGGATTGCTTAATGTGGCAAGTAAGCAGGACAACATTGTGGACATCCGTAGAAAATGTCTTTCAGGGGTTAGTATAGAAGAAACATATAGATTTATAGCTCTAAGGTCTTGGGAAAGAGTACGCAATGACCGCCATCTTCATGTTATACACACTTTTCAGTACTGATCCACTGAGACAGGTTAACAGTATTCTGTTATCTTTTTGATCCCTCGACCCTCCCTGTTGTAATGTGTTGATCATGAATCTAGTTTCCGCATTACCAGATGTTAGACTCCTTTTCTAGTTTTCTTCCATAATTTTTGCATTTGAGAATTGGGACAAATGAATGAGTGTTACGTATGTTGTTATTCATATTAGGACCTTAAAACTTTTCCAGGTGAAACATATTTGCTAAAAAGGAAAACATAATTCTTTGTTGTTAAACTCTAAAGGAATGGAATTTCTGTTTTACTAAAGTTCATTGTTGTAGATTCTTCGCCCTATAACTTTCTTTTTTCAGTTGCTAAGCTAAATTTTCTGCTTTCAGGTTGTCGGATGTTGTACTGTAGCCTTTTTCTTTTGATGAAATCACATATTTTGGCCTTCCTCAGCTTTTTCTGTCTTTCCTTCATAAAATCCGTTTACATTAGAATGTCAAATTTTAGCCAATAATATGCAAATCTTCAGATCAAATGATTGACGGCTTATTTTAGCTGCAACATCCCATCCATTTTGCAGGGAACAATCTTGTATTTAATGAAGTAAGAATTAACAAAGTATGGTGCAACTGTTTATCAGGATAAATATTGAACATTCATGTATTATGGTGGTAAAATCCTAGTAAATACATGAAAGAAATCACAATATATTGGAAGAACTTTTTGCTGTATTGCTTCTACTATCTGCATCTCTTTTGTTTATGCAAGTTTATTTTATGACTTGTTCCTAATGATTGTCCTCAAGCTCTTTGCTCATTATTTCCCAATACCTTTTCAGGTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATAC</genome_strand>
        <mrna_strand>TTAGTTCGATCTCAAGCGAATCTACTAAAATCCACCAATTTTCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACGACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333078" ref_strand="+" ref_description="SGN-E333078 [cTOD-19-G12]">
      <seq>tcaagcgaatctactaaaatccaccaattttcattcaggtggtcatctggctagttttggaactaggtcacttgtcagtggtaccaaacctgaccctagttgtgtgacacatctagctgctatccgtaaaaggtggctatcacagtctgcaacagcacaagacgacaacaagatcagcatagggcctcgcaaaggaggagaaggaggaaatgatgaaaaggatggcggagttgtctactatggtcctatctcaaacacaataaagaatgtgaagcttctgtccctttcaacatgttgcctttctgtgtctttaggccctgtcataaccttcatgacatctactgattcaaatgtgatactaaagggagcagttgcatctaccgttatattcttcagtgcttctactaccgctgcgcttcactggtttgtgagtccttatattcacaaactgagatggaagccaggttcagattcttttgaagtggagatgatgtcttggcttgcaacttttatgccgaagacgattaagtttgcagatatcaagcatcctgacaccaatagaccttatgtaacattcaaggctaacggaaacttttattttgttgatgcggagcattgtccgaacaaggcgctattggcaaaacttaccccacagaaacctactcatgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="72789" stop="75997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73089" g_stop="73126" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73127" i_stop="75063" i_length="1937">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75064" g_stop="75697" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="672" r_length="634" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E333078" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73089" e_stop="73126"/>
          <exon e_start="75064" e_stop="75697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCGAATCTACTAAAATCCACCAATTTTCATTCAGGTTCGTGTTTAATTGAATCAAGCAGTTTCATTTCTGTATAATTTATGGTTTCTGTTTCAATTTTCTGTTGTATCTGTATGTAAAATTGTTGGGTTTCAAAGAAAGTGAAAGAAAGTAACACCCTTTTGTTAATCTTGTTAAAAAGCTGTGTAATTTAATGCTATTGTTTTTTTATCAAATTGAAATAAGGTCCAATGTCCCTTCAGCTGGTGATGGGTGTTATATGTTACCTGTAGTGAGGAATCTAGTATTTGAAGTTTATGAGTTCGACTAGTTAGAAGATGACACGACATGACATGTTTTCGACTTATTGATCACACGACATTAGATAGGAGAGTATCGAGGTGGCAGATTAGTATAGAAGGTTAGAATTAATTGAGTATTGTCTCGTTTTGTAGTTTGGGGCTCAATACTGATTTCTCTTTGCATATAGGTACTCTGGTAGTGCAAGTAATGTTCTCAAAGTTTCTTGTCCTCTGATTTTGGGTAATACTTGATGTTTCGCGTGTGCTTTAGTTTTCACATTGTTTTGCTCTGAATGATATGTTATGCTTCTCTATTATATGTTGCGTCTTATTTACTGTTATATTCTCTTTTTCAAACTACTTTGTTATATGTTACTTGAGCTGAGGGTCTTGCTGTTATTTTTGTTGAGTTTCTTCAACGACATCAAGTTAATACTACAATAGTAATGGTGTTCACAGTTAATTATTATATAGATACTTAGTTGATGTCTATGTTAACAATTGTAAAAAAAAAGAAAGAAGATATTTAGTGGATTTCTCAGGGTTAAAGCAAGACCTACTGGATTCTGTGATATATATATATATATAGAATAGTGGGTCCATTGGTACTATGACCACAGTTACTTAAAATATTGGATTTTCCTATCAATGGGAAATTGGAATAGCATAATTGTTATACAGTGCCAGCTTTTGATTACCTGAGTTGGGAGAAAAAGTGGATTGCTTAATGTGGCAAGTAAGCAGGACAACATTGTGGACATCCGTAGAAAATGTCTTTCAGGGGTTAGTATAGAAGAAACATATAGATTTATAGCTCTAAGGTCTTGGGAAAGAGTACGCAATGACCGCCATCTTCATGTTATACACACTTTTCAGTACTGATCCACTGAGACAGGTTAACAGTATTCTGTTATCTTTTTGATCCCTCGACCCTCCCTGTTGTAATGTGTTGATCATGAATCTAGTTTCCGCATTACCAGATGTTAGACTCCTTTTCTAGTTTTCTTCCATAATTTTTGCATTTGAGAATTGGGACAAATGAATGAGTGTTACGTATGTTGTTATTCATATTAGGACCTTAAAACTTTTCCAGGTGAAACATATTTGCTAAAAAGGAAAACATAATTCTTTGTTGTTAAACTCTAAAGGAATGGAATTTCTGTTTTACTAAAGTTCATTGTTGTAGATTCTTCGCCCTATAACTTTCTTTTTTCAGTTGCTAAGCTAAATTTTCTGCTTTCAGGTTGTCGGATGTTGTACTGTAGCCTTTTTCTTTTGATGAAATCACATATTTTGGCCTTCCTCAGCTTTTTCTGTCTTTCCTTCATAAAATCCGTTTACATTAGAATGTCAAATTTTAGCCAATAATATGCAAATCTTCAGATCAAATGATTGACGGCTTATTTTAGCTGCAACATCCCATCCATTTTGCAGGGAACAATCTTGTATTTAATGAAGTAAGAATTAACAAAGTATGGTGCAACTGTTTATCAGGATAAATATTGAACATTCATGTATTATGGTGGTAAAATCCTAGTAAATACATGAAAGAAATCACAATATATTGGAAGAACTTTTTGCTGTATTGCTTCTACTATCTGCATCTCTTTTGTTTATGCAAGTTTATTTTATGACTTGTTCCTAATGATTGTCCTCAAGCTCTTTGCTCATTATTTCCCAATACCTTTTCAGGTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTC</genome_strand>
        <mrna_strand>TCAAGCGAATCTACTAAAATCCACCAATTTTCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332911" ref_strand="+" ref_description="SGN-E332911 [cTOD-19-G24]">
      <seq>tcaagcgaatctactaaaatccaccaattttcattcaggtggtcatctggctagttttggaactaggtcacttgtcagtggtaccaaacctgaccctagttgtgtgacacatctagctgctatccgtaaaaggtggctatcacagtctgcaacagcacaagacgacaacaagatcagcatagggcctcgcaaaggaggagaaggaggaaatgatgaaaaggatggcggagttgtctactatggtcctatctcaaacacaataaagaatgtgaagcttctgtccctttcaacatgttgcctttctgtgtctttaggccctgtcataaccttcatgacatctactgattcaaatgtgatactaaagggagcagttgcatctaccgttatattcttcagtgcttctactaccgctgcgcttcactggtttgtgagtccttatattcacaaactgagatggaagccaggttcagattcttttgaagtggagatgatgtcttggcttgcaacttttatgccgaagacgattaagtttgcagatatcaagcatcctgacaccaatagaccttatgtaacattcaaggctaacggaaacttttattttgttgatgcggagcattgtccgaacaaggcgctattgggcaaacttaccccacagaaacctactcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="72789" stop="75993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73089" g_stop="73126" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73127" i_stop="75063" i_length="1937">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75064" g_stop="75693" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="668" r_length="630" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E332911" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73089" e_stop="73126"/>
          <exon e_start="75064" e_stop="75693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCGAATCTACTAAAATCCACCAATTTTCATTCAGGTTCGTGTTTAATTGAATCAAGCAGTTTCATTTCTGTATAATTTATGGTTTCTGTTTCAATTTTCTGTTGTATCTGTATGTAAAATTGTTGGGTTTCAAAGAAAGTGAAAGAAAGTAACACCCTTTTGTTAATCTTGTTAAAAAGCTGTGTAATTTAATGCTATTGTTTTTTTATCAAATTGAAATAAGGTCCAATGTCCCTTCAGCTGGTGATGGGTGTTATATGTTACCTGTAGTGAGGAATCTAGTATTTGAAGTTTATGAGTTCGACTAGTTAGAAGATGACACGACATGACATGTTTTCGACTTATTGATCACACGACATTAGATAGGAGAGTATCGAGGTGGCAGATTAGTATAGAAGGTTAGAATTAATTGAGTATTGTCTCGTTTTGTAGTTTGGGGCTCAATACTGATTTCTCTTTGCATATAGGTACTCTGGTAGTGCAAGTAATGTTCTCAAAGTTTCTTGTCCTCTGATTTTGGGTAATACTTGATGTTTCGCGTGTGCTTTAGTTTTCACATTGTTTTGCTCTGAATGATATGTTATGCTTCTCTATTATATGTTGCGTCTTATTTACTGTTATATTCTCTTTTTCAAACTACTTTGTTATATGTTACTTGAGCTGAGGGTCTTGCTGTTATTTTTGTTGAGTTTCTTCAACGACATCAAGTTAATACTACAATAGTAATGGTGTTCACAGTTAATTATTATATAGATACTTAGTTGATGTCTATGTTAACAATTGTAAAAAAAAAGAAAGAAGATATTTAGTGGATTTCTCAGGGTTAAAGCAAGACCTACTGGATTCTGTGATATATATATATATATAGAATAGTGGGTCCATTGGTACTATGACCACAGTTACTTAAAATATTGGATTTTCCTATCAATGGGAAATTGGAATAGCATAATTGTTATACAGTGCCAGCTTTTGATTACCTGAGTTGGGAGAAAAAGTGGATTGCTTAATGTGGCAAGTAAGCAGGACAACATTGTGGACATCCGTAGAAAATGTCTTTCAGGGGTTAGTATAGAAGAAACATATAGATTTATAGCTCTAAGGTCTTGGGAAAGAGTACGCAATGACCGCCATCTTCATGTTATACACACTTTTCAGTACTGATCCACTGAGACAGGTTAACAGTATTCTGTTATCTTTTTGATCCCTCGACCCTCCCTGTTGTAATGTGTTGATCATGAATCTAGTTTCCGCATTACCAGATGTTAGACTCCTTTTCTAGTTTTCTTCCATAATTTTTGCATTTGAGAATTGGGACAAATGAATGAGTGTTACGTATGTTGTTATTCATATTAGGACCTTAAAACTTTTCCAGGTGAAACATATTTGCTAAAAAGGAAAACATAATTCTTTGTTGTTAAACTCTAAAGGAATGGAATTTCTGTTTTACTAAAGTTCATTGTTGTAGATTCTTCGCCCTATAACTTTCTTTTTTCAGTTGCTAAGCTAAATTTTCTGCTTTCAGGTTGTCGGATGTTGTACTGTAGCCTTTTTCTTTTGATGAAATCACATATTTTGGCCTTCCTCAGCTTTTTCTGTCTTTCCTTCATAAAATCCGTTTACATTAGAATGTCAAATTTTAGCCAATAATATGCAAATCTTCAGATCAAATGATTGACGGCTTATTTTAGCTGCAACATCCCATCCATTTTGCAGGGAACAATCTTGTATTTAATGAAGTAAGAATTAACAAAGTATGGTGCAACTGTTTATCAGGATAAATATTGAACATTCATGTATTATGGTGGTAAAATCCTAGTAAATACATGAAAGAAATCACAATATATTGGAAGAACTTTTTGCTGTATTGCTTCTACTATCTGCATCTCTTTTGTTTATGCAAGTTTATTTTATGACTTGTTCCTAATGATTGTCCTCAAGCTCTTTGCTCATTATTTCCCAATACCTTTTCAGGTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATG</genome_strand>
        <mrna_strand>TCAAGCGAATCTACTAAAATCCACCAATTTTCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGGCAAACTTACCCCACAGAAACCTACTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610527" ref_strand="+" ref_description="SGN-E610527 [57689]">
      <seq>ttttttttttggacaaccaactgaggcttatatatccaagactcaagtattggaacttctagtgagttatgcaatataaaaccttaaaatctcaaattattccagataaaaagtcatcacaagttcttgaaagctgactcatgagtaggtttctgtggggtaagttttgccaatagcgccttgttgggacaatgctcggcatcaacaaaatagaagtttccattagccttgaatgttacgtaaggtctattggtgtcaggatgcttgatatctgcaaacttaatcgtctttggcataaaagttgccagccaagacatcatctccacttcaaaagaatctgaacctggcttccatctcagtttatgaatataaggactcacaaaccagtgaagcgcagcggtagtagaagcactgaagaatataacagtagatgcaactgctcccttgagtatcacattcgaatcagtagatgacatgaaggttacgacagggcctaaagacacagagaggcaacaggttgaaagggacagaagcttcacattttttatcgtgtttgagataggaccatagtagacaactccaccatccttttcatcatttcctccttctcctcctttgcgaggccctatgctgatcttggtgtcgtcttgtgatgttgcagactgtgatagccaccttttacgaatagcagctagatgtgtcacacgactagggtcagtttggtaccactgacaagtgaacctagttccataactagccagatgaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="76128" stop="74764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75837" g_stop="75064" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="769" r_length="769" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E610527" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75837" e_stop="75064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAAAAATTGACAACCAACTGAGGCTTATATATATCCAAGACTCAAGTATTGGAACTTCTAGTGAGCAATGCAATACAAAACCTTCAAATCTCAAATTATTCCAGATAAAAAGTTGTCATCACAAGTTCTTGAAAGCTGACTCATGAGTAGGTTTCTGTGGGGTAAGTTTTGCCAATAGCGCCTTGTTCGGACAATGCTCCGCATCAACAAAATAAAAGTTTCCGTTAGCCTTGAATGTTACATAAGGTCTATTGGTGTCAGGATGCTTGATATCTGCAAACTTAATCGTCTTCGGCATAAAAGTTGCAAGCCAAGACATCATCTCCACTTCAAAAGAATCTGAACCTGGCTTCCATCTCAGTTTGTGAATATAAGGACTCACAAACCAGTGAAGCGCAGCGGTAGTAGAAGCACTGAAGAATATAACGGTAGATGCAACTGCTCCCTTTAGTATCACATTTGAATCAGTAGATGTCATGAAGGTTATGACAGGGCCTAAAGACACAGAAAGGCAACATGTTGAAAGGGACAGAAGCTTCACATTCTTTATTGTGTTTGAGATAGGACCATAGTAGACAACTCCGCCATCCTTTTCATCATTTCCTCCTTCTCCTCCTTTGCGAGGCCCTATGCTGATCTTGTTGTCGTCTTGTGCTGTTGCAGACTGTGATAGCCACCTTTTACGGATAGCAGCTAGATGTGTCACACAACTAGGGTCAGGTTTGGTACCACTGACAAGTG-ACCTAGTTCCAAAACTAGCCAGATGACCAC</genome_strand>
        <mrna_strand>TTTTTTTTTTGGACAACCAACTGAGGCTT--ATATATCCAAGACTCAAGTATTGGAACTTCTAGTGAGTTATGCAATATAAAACCTTAAAATCTCAAATTATTCCAGATAAAAA---GTCATCACAAGTTCTTGAAAGCTGACTCATGAGTAGGTTTCTGTGGGGTAAGTTTTGCCAATAGCGCCTTGTTGGGACAATGCTCGGCATCAACAAAATAGAAGTTTCCATTAGCCTTGAATGTTACGTAAGGTCTATTGGTGTCAGGATGCTTGATATCTGCAAACTTAATCGTCTTTGGCATAAAAGTTGCCAGCCAAGACATCATCTCCACTTCAAAAGAATCTGAACCTGGCTTCCATCTCAGTTTATGAATATAAGGACTCACAAACCAGTGAAGCGCAGCGGTAGTAGAAGCACTGAAGAATATAACAGTAGATGCAACTGCTCCCTTGAGTATCACATTCGAATCAGTAGATGACATGAAGGTTACGACAGGGCCTAAAGACACAGAGAGGCAACAGGTTGAAAGGGACAGAAGCTTCACATTTTTTATCGTGTTTGAGATAGGACCATAGTAGACAACTCCACCATCCTTTTCATCATTTCCTCCTTCTCCTCCTTTGCGAGGCCCTATGCTGATCTTGGTGTCGTCTTGTGATGTTGCAGACTGTGATAGCCACCTTTTACGAATAGCAGCTAGATGTGTCACACGACTAGGGTCA-GTTTGGTACCACTGACAAGTGAACCTAGTTCCATAACTAGCCAGATGACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550062" ref_strand="+" ref_description="SGN-E550062 [TUS-5-G27]">
      <seq>tgtgacacatctagctgctatccgtaaaaggtggctatcacagtctgcaacagcacaagacgacaacaagatcagcatagggcctcgcaaaggaggagaaggaggaaatgatgaaaaggatggcggagttgtctactatggtcctatctcaaacacaataaagaatgtgaagcttctgtccctttcaacatgttgcctttctgtgtctttaggccctgtcataaccttcatgacatctactgattcaaatgtgatactaaagggagcagttgcatctaccgttatattcttcagtgcttctactaccgctgcgcttcactggtttgtgagtccttatattcacaaactgagatggaagccaggttcagattcttttgaagtggagatgatgtcttggcttgcaacttttatgccgaagacgattaagtttgcagatatcaagcatcctgacaccaatagaccttatgtaacattcaaggctaacggaaacttttattttgttgatgcggagcattgtccgaacaaggcgctattggcaaaacttaccccacagaaacctactcatgagtcagctttcaagaacttgtgatgacaactttttatctggaataatttgagatttgaaggttttgtattgcattgctcactagaagttccaatacttgagtcttggatatatataagcctcagttggttgtcaatttttcaattattataacattgattgtcttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="74828" stop="76159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75128" g_stop="75861" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E550062" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75128" e_stop="75861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTCAGCTTTCAAGAACTTGTGATGACAACTTTTTATCTGGAATAATTTGAGATTTGAAGGTTTTGTATTGCATTGCTCACTAGAAGTTCCAATACTTGAGTCTTGGATATATATAAGCCTCAGTTGGTTGTCAATTTTTCAATTATTATAACATTGATTGTCTTATC</genome_strand>
        <mrna_strand>TGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTCAGCTTTCAAGAACTTGTGATGACAACTTTTTATCTGGAATAATTTGAGATTTGAAGGTTTTGTATTGCATTGCTCACTAGAAGTTCCAATACTTGAGTCTTGGATATATATAAGCCTCAGTTGGTTGTCAATTTTTCAATTATTATAACATTGATTGTCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550323" ref_strand="+" ref_description="SGN-E550323 [TUS-5-G27](-)">
      <seq>tgtgacacatctagctgctatccgtaaaaggtggctatcacagtctgcaacagcacaagacgacaacaagatcagcatagggcctcgcaaaggaggagaaggaggaaatgatgaaaaggatggcggagttgtctactatggtcctatctcaaacacaataaagaatgtgaagcttctgtccctttcaacatgttgcctttctgtgtctttaggccctgtcataaccttcatgacatctactgattcaaatgtgatactaaagggagcagttgcatctaccgttatattcttcagtgcttctactaccgctgcgcttcactggtttgtgagtccttatattcacaaactgagatggaagccaggttcagattcttttgaagtggagatgatgtcttggcttgcaacttttatgccgaagacgattaagtttgcagatatcaagcatcctgacaccaatagaccttatgtaacattcaaggctaacggaaacttttattttgttgatgcggagcattgtccgaacaaggcgctattggcaaaacttaccccacagaaacctactcatgagtcagctttcaagaacttgtgatgacaactgtttatctggaataatttgagatttgaaggttttgtattgcattgctcactagaagttgcaatacttgagtcttgtatatatataaggatcagttggtgtcaattttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="74828" stop="76136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75128" g_stop="75836" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E550323" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75128" e_stop="75836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTCAGCTTTCAAGAACTTGTGATGACAACTTTTTATCTGGAATAATTTGAGATTTGAAGGTTTTGTATTGCATTGCTCACTAGAAGTTCCAATACTTGAGTCTTGGATATATATAAGCCTCAGTTGGTTGTCAATTTTTCAA</genome_strand>
        <mrna_strand>TGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTCAGCTTTCAAGAACTTGTGATGACAACTGTTTATCTGGAATAATTTGAGATTTGAAGGTTTTGTATTGCATTGCTCACTAGAAGTTGCAATACTTGAGTCTTGTATATATATAAGGATCAGTTGG-TGTCAA-TTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389554" ref_strand="+" ref_description="SGN-E389554 [TUS-4-G15](-)">
      <seq>tgtgacacatctagctgctatccgtaaaaggtggctatcacagtctgcaacagcacaagacgacaacaagatcagcatagggcctcgcaaaggaggagaaggaggaaatgatgaaaaggatggcggagttgtctactatggtcctatctcaaacacaataaagaatgtgaagcttctgtccctttcaacatgttgcctttctgtgtctttaggccctgtcataaccttcatgacatctactgattcaaatgtgatactaaagggagcagttgcatctaccgttatattcttcagtgcttctactaccgctgcgcttcactggtttgtgagtccttatattcacaaactgagatggaagccaggttcagattcttttgaagtggagatgatgtcttggcttgcaacttttatgccgaagacgattaagtttgcagatatcaagcatcctgacaccaatagaccttatgtaacattcaaggctaacggaaacttttattttgttgatgcggagcattgtccgaacaaggcgctattggcaaaacttaccccacagaaacctactcatgagtcagctttcaagaacttgtgatgacaacggtttatctggaataatttgagatttgaaggttttgtattgcattgctcactagaagttccaatacttgagtcttggatatatataagccacagttggtgtcaattttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="74828" stop="76136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75128" g_stop="75836" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E389554" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75128" e_stop="75836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTCAGCTTTCAAGAACTTGTGATGACAACTTTTTATCTGGAATAATTTGAGATTTGAAGGTTTTGTATTGCATTGCTCACTAGAAGTTCCAATACTTGAGTCTTGGATATATATAAGCCTCAGTTGGTTGTCAATTTTTCAA</genome_strand>
        <mrna_strand>TGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTCAGCTTTCAAGAACTTGTGATGACAACGGTTTATCTGGAATAATTTGAGATTTGAAGGTTTTGTATTGCATTGCTCACTAGAAGTTCCAATACTTGAGTCTTGGATATATATAAGCCACAGTTGG-TGTCAA-TTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389813" ref_strand="+" ref_description="SGN-E389813 [TUS-4-G15]">
      <seq>tgtgacacatctagctgctatccgtaaaaggtggctatcacagtctgcaacagcacaagacgacaacaagatcagcatagggcctcgcaaaggaggagaaggaggaaatgatgaaaaggatggcggagttgtctactatggtcctatctcaaacacaataaagaatgtgaagcttctgtccctttcaacatgttgcctttctgtgtctttaggccctgtcataaccttcatgacatctactgattcaaatgtgatactaaagggagcagttgcatctaccgttatattcttcagtgcttctactaccgctgcgcttcactggtttgtgagtccttatattcacaaactgagatggaagccaggttcagattcttttgaagtggagatgatgtcttggcttgcaacttttatgccgaagacgattaagtttgcagatatcaagcatcctgacaccaatagaccttatgtaacattcaaggctaacggaaacttttattttgttgatgcggagcattgtccgaacaaggcgctattggcaaaacttaccccacagaaacctactcatgagtcagctttcaagaacttgtgatgacaactttttatctggaataatttgagatttgaaggttttgtattgcattgctcactagaagttccaatacttgagtcttggatatatataagcctcagttggttgtcaattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="74828" stop="76133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75128" g_stop="75833" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E389813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75128" e_stop="75833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTCAGCTTTCAAGAACTTGTGATGACAACTTTTTATCTGGAATAATTTGAGATTTGAAGGTTTTGTATTGCATTGCTCACTAGAAGTTCCAATACTTGAGTCTTGGATATATATAAGCCTCAGTTGGTTGTCAATTTTT</genome_strand>
        <mrna_strand>TGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTCAGCTTTCAAGAACTTGTGATGACAACTTTTTATCTGGAATAATTTGAGATTTGAAGGTTTTGTATTGCATTGCTCACTAGAAGTTCCAATACTTGAGTCTTGGATATATATAAGCCTCAGTTGGTTGTCAATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227126" ref_strand="+" ref_description="SGN-E227126 [cLED-1-L10]">
      <seq>gtgacacatctagctgctatccgtaaaaggtggctatcacagtctgcaacagcacaagacgacaacaagatcagcatagggcctcgcaaaggaggagaaggaggagatgatgaaaaggatggcggagttgtctactatggtcctatctcaaacacaataaagaatgtgaagcttctgtccctttcaacatgttgcctttctgagtctttaggccctgtcataaccttcatgacatctactgattcaaatgtgatactaaagggagcagttgcatctaccgctatattcttcagtgcttctactaccgctgcgctacactggtttgtgagtccttatattcacaaactgagatggaagccaggttcagattcttttgaagtggagatgatgtcttggcttgcaacttttatgccgaagacgattaagtttgcagatatcaagcatcctgacaccaatagaccttatgtaacattcaaggctaacggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="74829" stop="75916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75129" g_stop="75616" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E227126" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75129" e_stop="75616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAA</genome_strand>
        <mrna_strand>GTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAGATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGAGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGCTATATTCTTCAGTGCTTCTACTACCGCTGCGCTACACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590856" ref_strand="+" ref_description="SGN-E590856 [44650]">
      <seq>taaaaggtggctatcacagtctgcaacagcacacgacgacaacaagatcagcatagggcctcgcaaaggagaaggaggaaatgatgaaaaggatggtggagttgtctactatggtcctatctcaaacacgataaaaaatgtgaagcttctgtccctttcaacctgttgcctctctgtgtctttaggccctgtcgtaaccttcatgtcatctactgattcgaatgtgatactcaagggagcagttgcatctactgttatattcttcagtgcttctactaccgctgcacttcactggtttgtgagtccttatattcacaaactgagatggaagccaggttcagattcttttgaagtggagatgatgtcttggctggcaacttttatgccaaagacgattaaatttgcagatatcaagcatcctgacaccaatagaccttacgtaacattcaaggctaacggaaacttctattttgttgatgccgagcattgtcccaacaaggcgctattggcaaaacttaccccacagaaacctactcatgagtcagcattcaagaacttgtgatgactttttatctggaatgatttgagattttcaggtttcgttttgcgttactcactagaagttccaatacttgagtcttggatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="74852" stop="76106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75152" g_stop="75806" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E590856" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75152" e_stop="75806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTCAGCTTTCAAGAACTTGTGATGACAACTTTTTATCTGGAATAATTTGAGATTTGAAGGTTTTGTATTGCATTGCTCACTAGAAGTTCCAATACTTGAGTCTTGGATATAT</genome_strand>
        <mrna_strand>TAAAAGGTGGCTATCACAGTCTGCAACAGCACACGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAG---AAGGAGGAAATGATGAAAAGGATGGTGGAGTTGTCTACTATGGTCCTATCTCAAACACGATAAAAAATGTGAAGCTTCTGTCCCTTTCAACCTGTTGCCTCTCTGTGTCTTTAGGCCCTGTCGTAACCTTCATGTCATCTACTGATTCGAATGTGATACTCAAGGGAGCAGTTGCATCTACTGTTATATTCTTCAGTGCTTCTACTACCGCTGCACTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTGGCAACTTTTATGCCAAAGACGATTAAATTTGCAGATATCAAGCATCCTGACACCAATAGACCTTACGTAACATTCAAGGCTAACGGAAACTTCTATTTTGTTGATGCCGAGCATTGTCCCAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTCAGCATTCAAGAACTTGTGATG---ACTTTTTATCTGGAATGATTTGAGATTTTCAGGTTTCGTTTTGCGTTACTCACTAGAAGTTCCAATACTTGAGTCTTGGATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604544" ref_strand="+" ref_description="SGN-E604544 [74680]">
      <seq>agaaatgacctgccaagctggtctagacattactattattttcttttaaaaaaaagaaaaaaaagatgacaatcaatgttataataattggaaaattgacaaccaactgaggcttatatatccaagactcaagtattggaacttctagtgagtaacgcaaaacaaaacctgaaaatctcaaatcattccagataaaaagtcatcacaagttcttgaatgctgactcatgagtaggtttctgtggggtaagttttgccaatagcgccttgttgggacaatgctcggcatcaacaaaatagaagtttccgttagccttgaatgttacgtaaggtctattggtgtcaggatgcttgatatctgcaaatttaatcgtctttggcataaaagttgccagccaagacatcatctccacttcaaaagaatctgaacctggcttccatctcagtttgtgaatataaggactcacaaaccagtgaagtgcagcggtagtagaagcactgaagaatataacagtagatgcaactgctcccttgagtatcacattcgaatcagtagatgacatgaaggttacgacagggcctaaagacacagagaggcaacaggttgaaagggacagaagcttcacattttttatcgtgtttgagataggaccatagttagacaactccaaccatccttttcatacatttcctcctttctcccttgttgcgagggcccttatgcttgatcttgttgtcgtccgtgtgctgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="-" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="76179" stop="74886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75932" g_stop="75174" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="-" ref_id="SGN-E604544" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75932" e_stop="75174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGACCTGCCAAGCTGGTCTAGACATTACTATTATTTTCTTTTTAAAAAAAAAAAGAAGAAGAGAGAGATAAGACAATCAATGTTATAATAATTGAAAAATTGACAACCAACTGAGGCTTATATATATCCAAGACTCAAGTATTGGAACTTCTAGTGAGCAATGCAATACAAAACCTTCAAATCTCAAATTATTCCAGATAAAAAGTTGTCATCACAAGTTCTTGAAAGCTGACTCATGAGTAGGTTTCTGTGGGGTAAGTTTTGCCAATAGCGCCTTGTTCGGACAATGCTCCGCATCAACAAAATAAAAGTTTCCGTTAGCCTTGAATGTTACATAAGGTCTATTGGTGTCAGGATGCTTGATATCTGCAAACTTAATCGTCTTCGGCATAAAAGTTGCAAGCCAAGACATCATCTCCACTTCAAAAGAATCTGAACCTGGCTTCCATCTCAGTTTGTGAATATAAGGACTCACAAACCAGTGAAGCGCAGCGGTAGTAGAAGCACTGAAGAATATAACGGTAGATGCAACTGCTCCCTTTAGTATCACATTTGAATCAGTAGATGTCATGAAGGTTATGACAGGGCCTAAAGACACAGAAAGGCAACATGTTGAAAGGGACAGAAGCTTCACATTCTTTATTGTGTTTGAGATAGGACCATAG-TAGACAACTCC-GCCATCCTTTTCAT-CATTTCCTCC-TTCTCCTCCTTTGCGA-GGCCC-TATGC-TGATCTTGTTGTCGT-CTTGTGCTGTTGC</genome_strand>
        <mrna_strand>AGAAATGACCTGCCAAGCTGGTCTAGACATTACTATTATTTTC-TTTT---AAAAAAAAGAA-AA-A-AAAGAT--GACAATCAATGTTATAATAATTGGAAAATTGACAACCAACTGAGGC-T-TATATATCCAAGACTCAAGTATTGGAACTTCTAGTGAGTAACGCAAAACAAAACCTGAAAATCTCAAATCATTCCAGATAAAAA---GTCATCACAAGTTCTTGAATGCTGACTCATGAGTAGGTTTCTGTGGGGTAAGTTTTGCCAATAGCGCCTTGTTGGGACAATGCTCGGCATCAACAAAATAGAAGTTTCCGTTAGCCTTGAATGTTACGTAAGGTCTATTGGTGTCAGGATGCTTGATATCTGCAAATTTAATCGTCTTTGGCATAAAAGTTGCCAGCCAAGACATCATCTCCACTTCAAAAGAATCTGAACCTGGCTTCCATCTCAGTTTGTGAATATAAGGACTCACAAACCAGTGAAGTGCAGCGGTAGTAGAAGCACTGAAGAATATAACAGTAGATGCAACTGCTCCCTTGAGTATCACATTCGAATCAGTAGATGACATGAAGGTTACGACAGGGCCTAAAGACACAGAGAGGCAACAGGTTGAAAGGGACAGAAGCTTCACATTTTTTATCGTGTTTGAGATAGGACCATAGTTAGACAACTCCAACCATCCTTTTCATACATTTCCTCCTTTCTCCCTTGTTGCGAGGGCCCTTATGCTTGATCTTGTTGTCGTCCGTGTGCTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353962" ref_strand="+" ref_description="SGN-E353962 [cLHT-6-I7](-)">
      <seq>tcaagcatcctgacaccaataggccttatgtaacattcaaggctaacggaaacttctattttgttgatgccgagcattgtcccaacaaggcgctattggcaaaacttaccccacagaaacctactcatgagtcagctttcaagaacttgtgatgacaactttttatctggaataatttgagattttaaggttttgtattgcattgctcactattagttccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="75265" stop="76086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75565" g_stop="75786" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E353962" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75565" e_stop="75786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTCAGCTTTCAAGAACTTGTGATGACAACTTTTTATCTGGAATAATTTGAGATTTGAAGGTTTTGTATTGCATTGCTCACTAGAAGTTCCAA</genome_strand>
        <mrna_strand>TCAAGCATCCTGACACCAATAGGCCTTATGTAACATTCAAGGCTAACGGAAACTTCTATTTTGTTGATGCCGAGCATTGTCCCAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTCAGCTTTCAAGAACTTGTGATGACAACTTTTTATCTGGAATAATTTGAGATTTTAAGGTTTTGTATTGCATTGCTCACTATTAGTTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218246" ref_strand="+" ref_description="SGN-E218246 [cLEL-23-O13](-)">
      <seq>ctactcatgagtcagctttcaagaacttgtgatgacaactttttatctggaataatttgagatttgaaggttttgtattgcattgctcactagaagttccaatacttgagtcttggatatatataagcctcagttggttgtcaatttttcaattattataacattgattgtcttatctctctcttcttctttttttttttaaaaagaaaataatagtaatgtctagaccagcttggcaggtcatttcttccaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="75385" stop="76236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75685" g_stop="75935" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="252" polyA_stop="273"/>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E218246" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>251</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75685" e_stop="75935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTCATGAGTCAGCTTTCAAGAACTTGTGATGACAACTTTTTATCTGGAATAATTTGAGATTTGAAGGTTTTGTATTGCATTGCTCACTAGAAGTTCCAATACTTGAGTCTTGGATATATATAAGCCTCAGTTGGTTGTCAATTTTTCAATTATTATAACATTGATTGTCTTATCTCTCTCTTCTTCTTTTTTTTTTTAAAAAGAAAATAATAGTAATGTCTAGACCAGCTTGGCAGGTCATTTCTTCC</genome_strand>
        <mrna_strand>CTACTCATGAGTCAGCTTTCAAGAACTTGTGATGACAACTTTTTATCTGGAATAATTTGAGATTTGAAGGTTTTGTATTGCATTGCTCACTAGAAGTTCCAATACTTGAGTCTTGGATATATATAAGCCTCAGTTGGTTGTCAATTTTTCAATTATTATAACATTGATTGTCTTATCTCTCTCTTCTTCTTTTTTTTTTTAAAAAGAAAATAATAGTAATGTCTAGACCAGCTTGGCAGGTCATTTCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441446" ref_strand="+" ref_description="SGN-E441446 [cSTA-30-M4]">
      <seq>ctctctacaagtggaactttctctctctagaaaatcattacatacactcaacactatatatatatatatatatatatatatacaaaaaccctagcagccctgcgatcctcctccgtcgacgatgccgacgacgagtgtaatcggagctccgattcatctcattgatatccgctgattcctactttttccatttcattcctttgatccttgttcctggctgttgttgtgttgaatttgaacttgtttgttgaaagcttctggaaatgtataagaaccagttacaggaactggcacaaaggagttgcttcaacttgccgtcgtatacttgtataagggaaggtccggatcatgcgcctaggtttaaggctacggttaatttcaatggtgaggtctttgagagtccaaattactgctctacacttcgacaggctgaacattctgctgctgaggttgcgttgaattcactctctaatcgaggtccctccaactcgcttgctgctagaattctggatgagacaggcgtatataagaatctcttacaggaagtttcacaaagagtaggagcatcattgccagcatatacgacttttagatctggtctaggacatcttcctgtctttacctgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="77800" stop="80538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78071" g_stop="78582" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78583" i_stop="80119" i_length="1537">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80120" g_stop="80238" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="628" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E441446" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78071" e_stop="78582"/>
          <exon e_start="80120" e_stop="80238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTAGAAAATCATTACATACCCTCAACACTATATATTATATATATATATATAAATATTTATATATATATACACATATACATACAAAAACCCTAGCAGCCCTGCGATCCTCCTCCGTCGACGATGCCGACGGCGAGAGTAATCGGAGCTCCGATTCATCGCATTGATATCCGCTGATTCCTTGTTTTTCCATTTCATTTCTTTGATCCTTGTTCCTGGCTGTTGTTGTGTTGAATTTAAACTTGTTTGTTGAAAGCTTCTGGAAATGTATAAGAACCAGTTACAGGAACTGGCACAAAGGAGTTGCTTCAACTTGCCGTCGTATACTTGTATAAGGGAAGGTCCGGATCATGCGCCTAGGTTTAAGGCTACGGTTAATTTCAATGGTGAGGTGTTTGAGAGTCCAAATTACTGCTCTACACTTCGACAGGCTGAACACTCTGCTGCTGAGGTTGCGTTGAATTCACTCTCTAATCGAGGTCCCTCCAACTCGCTTGCTGCTAGAATTCTGGTATTTTTGACCCCCGATTTTAGCGGGATTTTTAGTTTGCTTTCTTAATTATGCTTTTTCTTCTGAGTTTGGCTTTTTGAAAATGAATGACGTCATTTGATCTTATAAGCTACAACTTTTAGATTTAATGTATATTCATTTGTGGGATTGAGTATGTTGTTGTATTTGCATTTGTGAATTTTCTAGGTTTCAGGGACCATTGGTTTTCTAAACCCTTGGTGTGCTAATTACCCTGGGGGTGGGTAGCTGGCACGCTGTACCGATCGGATTAGTCTGGACTCATGTGCACATAAACTAGCCCGGACACTTACATTAGAGAAAAGTTAATAAATATTGGTCATTTGTACTAAGATGATCTAAGAAGTCTAGTTGTGTGAGGTTGTGATATTATTAGTTTACTTTAGTTTCTTGATCAGTATTTGCAATTTTTCCTTTTATAGATATTTCCTTTTCTCTTCTTGTTTTTTCCTAGTTTGATTTATGGGAATTATCTGCCTATGTGTGCTTCGGAAAGCATATTCAGTCCCAAATTTCTGTCGTAGGTTGATGGCCAATGTAGTTAACTATGATGAATTTCGTGAACTTGTCATAGTTCAGGAGGGAAGCAGAGCTCCCTGTTATGTGGCTGTTAATAATGAGCAGTTTATAGTACTGGCTTAGGTATGGGTTGGGTGAAAACAATAACTAGTAATTTTAGGCATGTTTTCATGGAAGTTACAAATGTATGGAATGGTGATTTTCTTGTGATTTCCTTTTGTAAGTGAAGTAGAGGGTAGATGTTGTGGCATTTCTGGAGTCATTATCTTAATATATCTGTTTGTCCTTACAAAAAAAGGAATATTGATTTGTTAGTAGTCCTCTTCTGACTGTTTTCCCTTGTTTTCAGGCATTAGAATTCTTAGTTTTTCGCACTGTGCAACGTGAATAAACTTAAGCACCAGTATTAGGTAGGAACTTTTTGTATGGCCAACCTAGAAGCCATGTATCTTGTAGTCTAGACTGGGTACTACATTACATTCACTAAATGACTGTTCAAAACCTTTAGGTCAGTCAAGCTACCATAGTAGTCTGAAGATGGTGCTTCTGTTGTTAGGGTTCTAATATAAGACGGTCAGATCTGAGTCCAGAACTTCTGGAGGACATTGCCAACTTGTGATGGTCCTGTAGGTAGTTAGACGCAATATGTAAAGTTGCATCATTGCCAACTTCTGATAGTCCTGTAGGTAGTTAGACTCAAGATGTAAAGTTGCATCATTTCTGTATCATGATAATCTTGTTGTTAAGTATATTTAGTGTTAAAACAAATCTTAGATTTTCCAACTAATATCAAAGTTTTTGTTGCAGTAAAAAATGATAGCACAGGTGCAAGTGAGCTCAACATCATCACAATAAAATATGGCCTCCATTGATTTTATGTAGTACCTAATTGTTTTAAATTAATATAGGACACTTAGACTTAGATATGAAAGAACAAACCTTTGTGGTTGCTTCTGAATGGCATTTTGGTTTCTAATTTCTGTATGCCCATGATTTGTAGGATGAGACAGGCGTATATAAGAATCTCTTACAGGAAGTTTCACAAAGAGTAGGAGCATCATTGCCAGCATATACTACTTTTAGATCTGGTCTAGGACATCTTCCTGTCTTTACCTGCAC</genome_strand>
        <mrna_strand>CTCTCTA-CAAGT-GGAACTTTCTCTCTCTAGAAAATCAT-TACATACACTCAACACTATATATATATATATATATATATATATACAAAAACCCTAGCAGCCCTGCGATCCTCCTCCGTCGACGATGCCGACGACGAGTGTAATCGGAGCTCCGATTCATCTCATTGATATCCGCTGATTCCTACTTTTTCCATTTCATTCCTTTGATCCTTGTTCCTGGCTGTTGTTGTGTTGAATTTGAACTTGTTTGTTGAAAGCTTCTGGAAATGTATAAGAACCAGTTACAGGAACTGGCACAAAGGAGTTGCTTCAACTTGCCGTCGTATACTTGTATAAGGGAAGGTCCGGATCATGCGCCTAGGTTTAAGGCTACGGTTAATTTCAATGGTGAGGTCTTTGAGAGTCCAAATTACTGCTCTACACTTCGACAGGCTGAACATTCTGCTGCTGAGGTTGCGTTGAATTCACTCTCTAATCGAGGTCCCTCCAACTCGCTTGCTGCTAGAATTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGACAGGCGTATATAAGAATCTCTTACAGGAAGTTTCACAAAGAGTAGGAGCATCATTGCCAGCATATACGACTTTTAGATCTGGTCTAGGACATCTTCCTGTCTTTACCTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331130" ref_strand="+" ref_description="SGN-E331130 [cTOD-6-L9]">
      <seq>aaaatcattacataccctcaacactatatattatatatatatatataaatatttatatatatatacacatatacatacaaaaaccctagcagccctgcgatcctcctccgtcgacgatgccgacggcgagagtaatcggagctccgattcatcgcattgatatccgctgattccttgtttttccatttcatttctttgatccttgttcctggctgttgttgtgttgaatttaaacttgtttgttgaaagcttctggaaatgtataagaaccagttacaggaactggcacaaaggagttgcttcaacttgccgtcgtatacttgtataagggaaggtccggatcatgcgcctaggtttaaggctacggttaatttcaatggtgaggtgtttgagagtccaaattactgctctacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="77779" stop="78793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78079" g_stop="78493" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E331130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78079" e_stop="78493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCATTACATACCCTCAACACTATATATTATATATATATATATAAATATTTATATATATATACACATATACATACAAAAACCCTAGCAGCCCTGCGATCCTCCTCCGTCGACGATGCCGACGGCGAGAGTAATCGGAGCTCCGATTCATCGCATTGATATCCGCTGATTCCTTGTTTTTCCATTTCATTTCTTTGATCCTTGTTCCTGGCTGTTGTTGTGTTGAATTTAAACTTGTTTGTTGAAAGCTTCTGGAAATGTATAAGAACCAGTTACAGGAACTGGCACAAAGGAGTTGCTTCAACTTGCCGTCGTATACTTGTATAAGGGAAGGTCCGGATCATGCGCCTAGGTTTAAGGCTACGGTTAATTTCAATGGTGAGGTGTTTGAGAGTCCAAATTACTGCTCTACAC</genome_strand>
        <mrna_strand>AAAATCATTACATACCCTCAACACTATATATTATATATATATATATAAATATTTATATATATATACACATATACATACAAAAACCCTAGCAGCCCTGCGATCCTCCTCCGTCGACGATGCCGACGGCGAGAGTAATCGGAGCTCCGATTCATCGCATTGATATCCGCTGATTCCTTGTTTTTCCATTTCATTTCTTTGATCCTTGTTCCTGGCTGTTGTTGTGTTGAATTTAAACTTGTTTGTTGAAAGCTTCTGGAAATGTATAAGAACCAGTTACAGGAACTGGCACAAAGGAGTTGCTTCAACTTGCCGTCGTATACTTGTATAAGGGAAGGTCCGGATCATGCGCCTAGGTTTAAGGCTACGGTTAATTTCAATGGTGAGGTGTTTGAGAGTCCAAATTACTGCTCTACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314533" ref_strand="+" ref_description="SGN-E314533 [cTOA-20-C9]">
      <seq>cattacataccctcaacactatatattatatatatatatataaatatttatatatatatacacatatacatacaaaaaccctagcagccctgcgatcctcctccgtcgacgatgccgacggcgagagtaatcggagctccgattcatcgcattgatatccgctgattccttgtttttccatttcatttctttgatccttgttcctggctgttgttgtgttgaatttaaacttgtttgttgaaagcttctggaaatgtataagaaccagttacaggaactggcacaaaggagttgcttcaacttgccgtcgtatacttgtataagggaaggtccggatcatgcgcctaggtttaaggctacggttaatttcaatggtgaggtgtttgagagtccaaattactgctctacacttcgacaggctgaacactctgctgctgaggttgcgttgaattcactctctaatcgaggtccctccaactcgcttgctgctagaattctggatgagacaggcgtatataagaatctcttacaggaagtttcacaaagagtaggagcatcattgccagcatatactacttttagatctggtctaggacatcttcctgtctttacctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="77784" stop="80537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78084" g_stop="78582" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78583" i_stop="80119" i_length="1537">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80120" g_stop="80237" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="617" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E314533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78084" e_stop="78582"/>
          <exon e_start="80120" e_stop="80237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTACATACCCTCAACACTATATATTATATATATATATATAAATATTTATATATATATACACATATACATACAAAAACCCTAGCAGCCCTGCGATCCTCCTCCGTCGACGATGCCGACGGCGAGAGTAATCGGAGCTCCGATTCATCGCATTGATATCCGCTGATTCCTTGTTTTTCCATTTCATTTCTTTGATCCTTGTTCCTGGCTGTTGTTGTGTTGAATTTAAACTTGTTTGTTGAAAGCTTCTGGAAATGTATAAGAACCAGTTACAGGAACTGGCACAAAGGAGTTGCTTCAACTTGCCGTCGTATACTTGTATAAGGGAAGGTCCGGATCATGCGCCTAGGTTTAAGGCTACGGTTAATTTCAATGGTGAGGTGTTTGAGAGTCCAAATTACTGCTCTACACTTCGACAGGCTGAACACTCTGCTGCTGAGGTTGCGTTGAATTCACTCTCTAATCGAGGTCCCTCCAACTCGCTTGCTGCTAGAATTCTGGTATTTTTGACCCCCGATTTTAGCGGGATTTTTAGTTTGCTTTCTTAATTATGCTTTTTCTTCTGAGTTTGGCTTTTTGAAAATGAATGACGTCATTTGATCTTATAAGCTACAACTTTTAGATTTAATGTATATTCATTTGTGGGATTGAGTATGTTGTTGTATTTGCATTTGTGAATTTTCTAGGTTTCAGGGACCATTGGTTTTCTAAACCCTTGGTGTGCTAATTACCCTGGGGGTGGGTAGCTGGCACGCTGTACCGATCGGATTAGTCTGGACTCATGTGCACATAAACTAGCCCGGACACTTACATTAGAGAAAAGTTAATAAATATTGGTCATTTGTACTAAGATGATCTAAGAAGTCTAGTTGTGTGAGGTTGTGATATTATTAGTTTACTTTAGTTTCTTGATCAGTATTTGCAATTTTTCCTTTTATAGATATTTCCTTTTCTCTTCTTGTTTTTTCCTAGTTTGATTTATGGGAATTATCTGCCTATGTGTGCTTCGGAAAGCATATTCAGTCCCAAATTTCTGTCGTAGGTTGATGGCCAATGTAGTTAACTATGATGAATTTCGTGAACTTGTCATAGTTCAGGAGGGAAGCAGAGCTCCCTGTTATGTGGCTGTTAATAATGAGCAGTTTATAGTACTGGCTTAGGTATGGGTTGGGTGAAAACAATAACTAGTAATTTTAGGCATGTTTTCATGGAAGTTACAAATGTATGGAATGGTGATTTTCTTGTGATTTCCTTTTGTAAGTGAAGTAGAGGGTAGATGTTGTGGCATTTCTGGAGTCATTATCTTAATATATCTGTTTGTCCTTACAAAAAAAGGAATATTGATTTGTTAGTAGTCCTCTTCTGACTGTTTTCCCTTGTTTTCAGGCATTAGAATTCTTAGTTTTTCGCACTGTGCAACGTGAATAAACTTAAGCACCAGTATTAGGTAGGAACTTTTTGTATGGCCAACCTAGAAGCCATGTATCTTGTAGTCTAGACTGGGTACTACATTACATTCACTAAATGACTGTTCAAAACCTTTAGGTCAGTCAAGCTACCATAGTAGTCTGAAGATGGTGCTTCTGTTGTTAGGGTTCTAATATAAGACGGTCAGATCTGAGTCCAGAACTTCTGGAGGACATTGCCAACTTGTGATGGTCCTGTAGGTAGTTAGACGCAATATGTAAAGTTGCATCATTGCCAACTTCTGATAGTCCTGTAGGTAGTTAGACTCAAGATGTAAAGTTGCATCATTTCTGTATCATGATAATCTTGTTGTTAAGTATATTTAGTGTTAAAACAAATCTTAGATTTTCCAACTAATATCAAAGTTTTTGTTGCAGTAAAAAATGATAGCACAGGTGCAAGTGAGCTCAACATCATCACAATAAAATATGGCCTCCATTGATTTTATGTAGTACCTAATTGTTTTAAATTAATATAGGACACTTAGACTTAGATATGAAAGAACAAACCTTTGTGGTTGCTTCTGAATGGCATTTTGGTTTCTAATTTCTGTATGCCCATGATTTGTAGGATGAGACAGGCGTATATAAGAATCTCTTACAGGAAGTTTCACAAAGAGTAGGAGCATCATTGCCAGCATATACTACTTTTAGATCTGGTCTAGGACATCTTCCTGTCTTTACCTGCA</genome_strand>
        <mrna_strand>CATTACATACCCTCAACACTATATATTATATATATATATATAAATATTTATATATATATACACATATACATACAAAAACCCTAGCAGCCCTGCGATCCTCCTCCGTCGACGATGCCGACGGCGAGAGTAATCGGAGCTCCGATTCATCGCATTGATATCCGCTGATTCCTTGTTTTTCCATTTCATTTCTTTGATCCTTGTTCCTGGCTGTTGTTGTGTTGAATTTAAACTTGTTTGTTGAAAGCTTCTGGAAATGTATAAGAACCAGTTACAGGAACTGGCACAAAGGAGTTGCTTCAACTTGCCGTCGTATACTTGTATAAGGGAAGGTCCGGATCATGCGCCTAGGTTTAAGGCTACGGTTAATTTCAATGGTGAGGTGTTTGAGAGTCCAAATTACTGCTCTACACTTCGACAGGCTGAACACTCTGCTGCTGAGGTTGCGTTGAATTCACTCTCTAATCGAGGTCCCTCCAACTCGCTTGCTGCTAGAATTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGACAGGCGTATATAAGAATCTCTTACAGGAAGTTTCACAAAGAGTAGGAGCATCATTGCCAGCATATACTACTTTTAGATCTGGTCTAGGACATCTTCCTGTCTTTACCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330268" ref_strand="+" ref_description="SGN-E330268 [cTOD-4-D3]">
      <seq>tgcgatcctcctccgtcgacgatgccgacggcgagagtaatcggagctccgattcatcgcattgatatccgctgattccttgtttttccatttcatttctttgatccttgttcctggctgttgttgtgttgaatttaaacttgtttgttgaaagcttctggaaatgtataagaaccagttacaggaactggcacaaaggagttgcttcaacttgccgtcgtatacttgtataagggaaggtccggatcatgcgcctaggtttaaggctacggttaatttcaatggtgaggtgtttgagagtccaaattactgctctacacttcgacaggctgaacactctgctgctgaggttgcgttgaattcactctctaatcgaggtccctccaactcgcttgctgctagaattctggatgagacaggcgtatataagaatctcttacaggaagtttcacaaagagtaggagcatcattgccagcatatactacttttagatctggtctaggacatcttcctgtctttacctgcacagtggagttggcgggcgttacatttactggtgagtcagcaaagaataagaagcaagctgaaaagaatgcagctatggcagcttggtcatctctgaaattattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="77874" stop="80639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78174" g_stop="78582" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78583" i_stop="80119" i_length="1537">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80120" g_stop="80339" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="629" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E330268" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78174" e_stop="78582"/>
          <exon e_start="80120" e_stop="80339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGATCCTCCTCCGTCGACGATGCCGACGGCGAGAGTAATCGGAGCTCCGATTCATCGCATTGATATCCGCTGATTCCTTGTTTTTCCATTTCATTTCTTTGATCCTTGTTCCTGGCTGTTGTTGTGTTGAATTTAAACTTGTTTGTTGAAAGCTTCTGGAAATGTATAAGAACCAGTTACAGGAACTGGCACAAAGGAGTTGCTTCAACTTGCCGTCGTATACTTGTATAAGGGAAGGTCCGGATCATGCGCCTAGGTTTAAGGCTACGGTTAATTTCAATGGTGAGGTGTTTGAGAGTCCAAATTACTGCTCTACACTTCGACAGGCTGAACACTCTGCTGCTGAGGTTGCGTTGAATTCACTCTCTAATCGAGGTCCCTCCAACTCGCTTGCTGCTAGAATTCTGGTATTTTTGACCCCCGATTTTAGCGGGATTTTTAGTTTGCTTTCTTAATTATGCTTTTTCTTCTGAGTTTGGCTTTTTGAAAATGAATGACGTCATTTGATCTTATAAGCTACAACTTTTAGATTTAATGTATATTCATTTGTGGGATTGAGTATGTTGTTGTATTTGCATTTGTGAATTTTCTAGGTTTCAGGGACCATTGGTTTTCTAAACCCTTGGTGTGCTAATTACCCTGGGGGTGGGTAGCTGGCACGCTGTACCGATCGGATTAGTCTGGACTCATGTGCACATAAACTAGCCCGGACACTTACATTAGAGAAAAGTTAATAAATATTGGTCATTTGTACTAAGATGATCTAAGAAGTCTAGTTGTGTGAGGTTGTGATATTATTAGTTTACTTTAGTTTCTTGATCAGTATTTGCAATTTTTCCTTTTATAGATATTTCCTTTTCTCTTCTTGTTTTTTCCTAGTTTGATTTATGGGAATTATCTGCCTATGTGTGCTTCGGAAAGCATATTCAGTCCCAAATTTCTGTCGTAGGTTGATGGCCAATGTAGTTAACTATGATGAATTTCGTGAACTTGTCATAGTTCAGGAGGGAAGCAGAGCTCCCTGTTATGTGGCTGTTAATAATGAGCAGTTTATAGTACTGGCTTAGGTATGGGTTGGGTGAAAACAATAACTAGTAATTTTAGGCATGTTTTCATGGAAGTTACAAATGTATGGAATGGTGATTTTCTTGTGATTTCCTTTTGTAAGTGAAGTAGAGGGTAGATGTTGTGGCATTTCTGGAGTCATTATCTTAATATATCTGTTTGTCCTTACAAAAAAAGGAATATTGATTTGTTAGTAGTCCTCTTCTGACTGTTTTCCCTTGTTTTCAGGCATTAGAATTCTTAGTTTTTCGCACTGTGCAACGTGAATAAACTTAAGCACCAGTATTAGGTAGGAACTTTTTGTATGGCCAACCTAGAAGCCATGTATCTTGTAGTCTAGACTGGGTACTACATTACATTCACTAAATGACTGTTCAAAACCTTTAGGTCAGTCAAGCTACCATAGTAGTCTGAAGATGGTGCTTCTGTTGTTAGGGTTCTAATATAAGACGGTCAGATCTGAGTCCAGAACTTCTGGAGGACATTGCCAACTTGTGATGGTCCTGTAGGTAGTTAGACGCAATATGTAAAGTTGCATCATTGCCAACTTCTGATAGTCCTGTAGGTAGTTAGACTCAAGATGTAAAGTTGCATCATTTCTGTATCATGATAATCTTGTTGTTAAGTATATTTAGTGTTAAAACAAATCTTAGATTTTCCAACTAATATCAAAGTTTTTGTTGCAGTAAAAAATGATAGCACAGGTGCAAGTGAGCTCAACATCATCACAATAAAATATGGCCTCCATTGATTTTATGTAGTACCTAATTGTTTTAAATTAATATAGGACACTTAGACTTAGATATGAAAGAACAAACCTTTGTGGTTGCTTCTGAATGGCATTTTGGTTTCTAATTTCTGTATGCCCATGATTTGTAGGATGAGACAGGCGTATATAAGAATCTCTTACAGGAAGTTTCACAAAGAGTAGGAGCATCATTGCCAGCATATACTACTTTTAGATCTGGTCTAGGACATCTTCCTGTCTTTACCTGCACAGTGGAGTTGGCGGGCGTTACATTTACTGGTGAGTCAGCAAAGAATAAGAAGCAAGCTGAAAAGAATGCAGCTATGGCAGCTTGGTCATCTCTGAAATTAT</genome_strand>
        <mrna_strand>TGCGATCCTCCTCCGTCGACGATGCCGACGGCGAGAGTAATCGGAGCTCCGATTCATCGCATTGATATCCGCTGATTCCTTGTTTTTCCATTTCATTTCTTTGATCCTTGTTCCTGGCTGTTGTTGTGTTGAATTTAAACTTGTTTGTTGAAAGCTTCTGGAAATGTATAAGAACCAGTTACAGGAACTGGCACAAAGGAGTTGCTTCAACTTGCCGTCGTATACTTGTATAAGGGAAGGTCCGGATCATGCGCCTAGGTTTAAGGCTACGGTTAATTTCAATGGTGAGGTGTTTGAGAGTCCAAATTACTGCTCTACACTTCGACAGGCTGAACACTCTGCTGCTGAGGTTGCGTTGAATTCACTCTCTAATCGAGGTCCCTCCAACTCGCTTGCTGCTAGAATTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGACAGGCGTATATAAGAATCTCTTACAGGAAGTTTCACAAAGAGTAGGAGCATCATTGCCAGCATATACTACTTTTAGATCTGGTCTAGGACATCTTCCTGTCTTTACCTGCACAGTGGAGTTGGCGGGCGTTACATTTACTGGTGAGTCAGCAAAGAATAAGAAGCAAGCTGAAAAGAATGCAGCTATGGCAGCTTGGTCATCTCTGAAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330267" ref_strand="+" ref_description="SGN-E330267 [cTOD-4-B23]">
      <seq>tgcgatcctcctccgtcgacgatgccgacggcgagagtaatcggagctccgattcatcgcattgatatccgctgattccttgtttttccatttcatttctttgatccttgttcctggctgttgttgtgttgaatttaaacttgtttgttgaaagcttctggaaatgtataagaaccagttacaggaactggcacaaaggagttgcttcaacttgccgtcgtatacttgtataagggaaggtccggatcatgcgcctaggtttaaggctacggttaatttcaatggtgaggtgtttgagagtccaaattactgctctacacttcgacaggctgaacactctgctgctgaggttgcgttgaattcactctctaatcgaggtccctccaactcgcttgctgctagaattctggatgagacaggcgtatataagaatctcttacaggaagtttcacaaagagtaggagcatcattgccagcatatactacttttagatctggtctaggacatcttcctgtctttacctgcacagtggagttggcgggcgttacatttactggtgagtcagcaaagaataagaagcaagctgaaaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="77874" stop="80606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78174" g_stop="78582" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78583" i_stop="80119" i_length="1537">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80120" g_stop="80306" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="596" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E330267" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78174" e_stop="78582"/>
          <exon e_start="80120" e_stop="80306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGATCCTCCTCCGTCGACGATGCCGACGGCGAGAGTAATCGGAGCTCCGATTCATCGCATTGATATCCGCTGATTCCTTGTTTTTCCATTTCATTTCTTTGATCCTTGTTCCTGGCTGTTGTTGTGTTGAATTTAAACTTGTTTGTTGAAAGCTTCTGGAAATGTATAAGAACCAGTTACAGGAACTGGCACAAAGGAGTTGCTTCAACTTGCCGTCGTATACTTGTATAAGGGAAGGTCCGGATCATGCGCCTAGGTTTAAGGCTACGGTTAATTTCAATGGTGAGGTGTTTGAGAGTCCAAATTACTGCTCTACACTTCGACAGGCTGAACACTCTGCTGCTGAGGTTGCGTTGAATTCACTCTCTAATCGAGGTCCCTCCAACTCGCTTGCTGCTAGAATTCTGGTATTTTTGACCCCCGATTTTAGCGGGATTTTTAGTTTGCTTTCTTAATTATGCTTTTTCTTCTGAGTTTGGCTTTTTGAAAATGAATGACGTCATTTGATCTTATAAGCTACAACTTTTAGATTTAATGTATATTCATTTGTGGGATTGAGTATGTTGTTGTATTTGCATTTGTGAATTTTCTAGGTTTCAGGGACCATTGGTTTTCTAAACCCTTGGTGTGCTAATTACCCTGGGGGTGGGTAGCTGGCACGCTGTACCGATCGGATTAGTCTGGACTCATGTGCACATAAACTAGCCCGGACACTTACATTAGAGAAAAGTTAATAAATATTGGTCATTTGTACTAAGATGATCTAAGAAGTCTAGTTGTGTGAGGTTGTGATATTATTAGTTTACTTTAGTTTCTTGATCAGTATTTGCAATTTTTCCTTTTATAGATATTTCCTTTTCTCTTCTTGTTTTTTCCTAGTTTGATTTATGGGAATTATCTGCCTATGTGTGCTTCGGAAAGCATATTCAGTCCCAAATTTCTGTCGTAGGTTGATGGCCAATGTAGTTAACTATGATGAATTTCGTGAACTTGTCATAGTTCAGGAGGGAAGCAGAGCTCCCTGTTATGTGGCTGTTAATAATGAGCAGTTTATAGTACTGGCTTAGGTATGGGTTGGGTGAAAACAATAACTAGTAATTTTAGGCATGTTTTCATGGAAGTTACAAATGTATGGAATGGTGATTTTCTTGTGATTTCCTTTTGTAAGTGAAGTAGAGGGTAGATGTTGTGGCATTTCTGGAGTCATTATCTTAATATATCTGTTTGTCCTTACAAAAAAAGGAATATTGATTTGTTAGTAGTCCTCTTCTGACTGTTTTCCCTTGTTTTCAGGCATTAGAATTCTTAGTTTTTCGCACTGTGCAACGTGAATAAACTTAAGCACCAGTATTAGGTAGGAACTTTTTGTATGGCCAACCTAGAAGCCATGTATCTTGTAGTCTAGACTGGGTACTACATTACATTCACTAAATGACTGTTCAAAACCTTTAGGTCAGTCAAGCTACCATAGTAGTCTGAAGATGGTGCTTCTGTTGTTAGGGTTCTAATATAAGACGGTCAGATCTGAGTCCAGAACTTCTGGAGGACATTGCCAACTTGTGATGGTCCTGTAGGTAGTTAGACGCAATATGTAAAGTTGCATCATTGCCAACTTCTGATAGTCCTGTAGGTAGTTAGACTCAAGATGTAAAGTTGCATCATTTCTGTATCATGATAATCTTGTTGTTAAGTATATTTAGTGTTAAAACAAATCTTAGATTTTCCAACTAATATCAAAGTTTTTGTTGCAGTAAAAAATGATAGCACAGGTGCAAGTGAGCTCAACATCATCACAATAAAATATGGCCTCCATTGATTTTATGTAGTACCTAATTGTTTTAAATTAATATAGGACACTTAGACTTAGATATGAAAGAACAAACCTTTGTGGTTGCTTCTGAATGGCATTTTGGTTTCTAATTTCTGTATGCCCATGATTTGTAGGATGAGACAGGCGTATATAAGAATCTCTTACAGGAAGTTTCACAAAGAGTAGGAGCATCATTGCCAGCATATACTACTTTTAGATCTGGTCTAGGACATCTTCCTGTCTTTACCTGCACAGTGGAGTTGGCGGGCGTTACATTTACTGGTGAGTCAGCAAAGAATAAGAAGCAAGCTGAAAAGAATG</genome_strand>
        <mrna_strand>TGCGATCCTCCTCCGTCGACGATGCCGACGGCGAGAGTAATCGGAGCTCCGATTCATCGCATTGATATCCGCTGATTCCTTGTTTTTCCATTTCATTTCTTTGATCCTTGTTCCTGGCTGTTGTTGTGTTGAATTTAAACTTGTTTGTTGAAAGCTTCTGGAAATGTATAAGAACCAGTTACAGGAACTGGCACAAAGGAGTTGCTTCAACTTGCCGTCGTATACTTGTATAAGGGAAGGTCCGGATCATGCGCCTAGGTTTAAGGCTACGGTTAATTTCAATGGTGAGGTGTTTGAGAGTCCAAATTACTGCTCTACACTTCGACAGGCTGAACACTCTGCTGCTGAGGTTGCGTTGAATTCACTCTCTAATCGAGGTCCCTCCAACTCGCTTGCTGCTAGAATTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGACAGGCGTATATAAGAATCTCTTACAGGAAGTTTCACAAAGAGTAGGAGCATCATTGCCAGCATATACTACTTTTAGATCTGGTCTAGGACATCTTCCTGTCTTTACCTGCACAGTGGAGTTGGCGGGCGTTACATTTACTGGTGAGTCAGCAAAGAATAAGAAGCAAGCTGAAAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308191" ref_strand="+" ref_description="SGN-E308191 [cLEY-14-L7]">
      <seq>tgcgatcctcctccgtcgacgatgccgacggcgagagtaatcggagctccgattcatcgcattgatatccgctgattccttgtttttccatttcatttctttgatccttgttcctggctgttgttgtgttgaatttaaacttgtttgttgaaagcttctggaaatgtataagaaccagttacaggaactggcacaaaggagttgcttcaacttgccgtcgtatacttgtataagggaaggtccggatcatgcgcctaggtttaaggctacggttaatttcaatggtgaggtgtttgagagtccaaattactgctctacacttcgacaggctgaacactctgctgctgaggttgcgttgaattcactctctaatcgaggtccctccaactcgcttgctgctagaattctggatgagacaggcgtatataagaatctcttacaggaagtttcacaaagagtaggagcatcattgccagcatatactacttttagatctggtctaggacatcttcctgtctttacctgcacagtggagttggcgggcgttacatttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="77874" stop="80567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78174" g_stop="78582" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78583" i_stop="80119" i_length="1537">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80120" g_stop="80267" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="557" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E308191" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78174" e_stop="78582"/>
          <exon e_start="80120" e_stop="80267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGATCCTCCTCCGTCGACGATGCCGACGGCGAGAGTAATCGGAGCTCCGATTCATCGCATTGATATCCGCTGATTCCTTGTTTTTCCATTTCATTTCTTTGATCCTTGTTCCTGGCTGTTGTTGTGTTGAATTTAAACTTGTTTGTTGAAAGCTTCTGGAAATGTATAAGAACCAGTTACAGGAACTGGCACAAAGGAGTTGCTTCAACTTGCCGTCGTATACTTGTATAAGGGAAGGTCCGGATCATGCGCCTAGGTTTAAGGCTACGGTTAATTTCAATGGTGAGGTGTTTGAGAGTCCAAATTACTGCTCTACACTTCGACAGGCTGAACACTCTGCTGCTGAGGTTGCGTTGAATTCACTCTCTAATCGAGGTCCCTCCAACTCGCTTGCTGCTAGAATTCTGGTATTTTTGACCCCCGATTTTAGCGGGATTTTTAGTTTGCTTTCTTAATTATGCTTTTTCTTCTGAGTTTGGCTTTTTGAAAATGAATGACGTCATTTGATCTTATAAGCTACAACTTTTAGATTTAATGTATATTCATTTGTGGGATTGAGTATGTTGTTGTATTTGCATTTGTGAATTTTCTAGGTTTCAGGGACCATTGGTTTTCTAAACCCTTGGTGTGCTAATTACCCTGGGGGTGGGTAGCTGGCACGCTGTACCGATCGGATTAGTCTGGACTCATGTGCACATAAACTAGCCCGGACACTTACATTAGAGAAAAGTTAATAAATATTGGTCATTTGTACTAAGATGATCTAAGAAGTCTAGTTGTGTGAGGTTGTGATATTATTAGTTTACTTTAGTTTCTTGATCAGTATTTGCAATTTTTCCTTTTATAGATATTTCCTTTTCTCTTCTTGTTTTTTCCTAGTTTGATTTATGGGAATTATCTGCCTATGTGTGCTTCGGAAAGCATATTCAGTCCCAAATTTCTGTCGTAGGTTGATGGCCAATGTAGTTAACTATGATGAATTTCGTGAACTTGTCATAGTTCAGGAGGGAAGCAGAGCTCCCTGTTATGTGGCTGTTAATAATGAGCAGTTTATAGTACTGGCTTAGGTATGGGTTGGGTGAAAACAATAACTAGTAATTTTAGGCATGTTTTCATGGAAGTTACAAATGTATGGAATGGTGATTTTCTTGTGATTTCCTTTTGTAAGTGAAGTAGAGGGTAGATGTTGTGGCATTTCTGGAGTCATTATCTTAATATATCTGTTTGTCCTTACAAAAAAAGGAATATTGATTTGTTAGTAGTCCTCTTCTGACTGTTTTCCCTTGTTTTCAGGCATTAGAATTCTTAGTTTTTCGCACTGTGCAACGTGAATAAACTTAAGCACCAGTATTAGGTAGGAACTTTTTGTATGGCCAACCTAGAAGCCATGTATCTTGTAGTCTAGACTGGGTACTACATTACATTCACTAAATGACTGTTCAAAACCTTTAGGTCAGTCAAGCTACCATAGTAGTCTGAAGATGGTGCTTCTGTTGTTAGGGTTCTAATATAAGACGGTCAGATCTGAGTCCAGAACTTCTGGAGGACATTGCCAACTTGTGATGGTCCTGTAGGTAGTTAGACGCAATATGTAAAGTTGCATCATTGCCAACTTCTGATAGTCCTGTAGGTAGTTAGACTCAAGATGTAAAGTTGCATCATTTCTGTATCATGATAATCTTGTTGTTAAGTATATTTAGTGTTAAAACAAATCTTAGATTTTCCAACTAATATCAAAGTTTTTGTTGCAGTAAAAAATGATAGCACAGGTGCAAGTGAGCTCAACATCATCACAATAAAATATGGCCTCCATTGATTTTATGTAGTACCTAATTGTTTTAAATTAATATAGGACACTTAGACTTAGATATGAAAGAACAAACCTTTGTGGTTGCTTCTGAATGGCATTTTGGTTTCTAATTTCTGTATGCCCATGATTTGTAGGATGAGACAGGCGTATATAAGAATCTCTTACAGGAAGTTTCACAAAGAGTAGGAGCATCATTGCCAGCATATACTACTTTTAGATCTGGTCTAGGACATCTTCCTGTCTTTACCTGCACAGTGGAGTTGGCGGGCGTTACATTTACTG</genome_strand>
        <mrna_strand>TGCGATCCTCCTCCGTCGACGATGCCGACGGCGAGAGTAATCGGAGCTCCGATTCATCGCATTGATATCCGCTGATTCCTTGTTTTTCCATTTCATTTCTTTGATCCTTGTTCCTGGCTGTTGTTGTGTTGAATTTAAACTTGTTTGTTGAAAGCTTCTGGAAATGTATAAGAACCAGTTACAGGAACTGGCACAAAGGAGTTGCTTCAACTTGCCGTCGTATACTTGTATAAGGGAAGGTCCGGATCATGCGCCTAGGTTTAAGGCTACGGTTAATTTCAATGGTGAGGTGTTTGAGAGTCCAAATTACTGCTCTACACTTCGACAGGCTGAACACTCTGCTGCTGAGGTTGCGTTGAATTCACTCTCTAATCGAGGTCCCTCCAACTCGCTTGCTGCTAGAATTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGACAGGCGTATATAAGAATCTCTTACAGGAAGTTTCACAAAGAGTAGGAGCATCATTGCCAGCATATACTACTTTTAGATCTGGTCTAGGACATCTTCCTGTCTTTACCTGCACAGTGGAGTTGGCGGGCGTTACATTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446606" ref_strand="+" ref_description="SGN-E446606 [cSTA-22-M11]">
      <seq>cgagagcgtcgacgatgcccgacgaccgagtgtaatcggagctccgattcatctcattgatatcccgctgattcctactttttccatttcattcctttgatccttgttcctggctgttgttgtgttgaatttgaacttgtttgttgaaagcttctggaaatgtataagaaccagttacaggaactggcacaaaggagttgcttcaacttgccgtcgtatacttgtataagggaaggtccggatcatgcgcctaggtttaaggctacggttaatttcaatggtgaggtctttgagagtccaaattactgctcgacacttcgacaggctgaacactctgctgctgaggttgcgttgaattcactctctaatcgaggtccctccaactcgcttgctgctagaattctggatgagacaggcgtatataagaatctcttacaggaagtttcacaaagagtaggagcatcattgccagcatatactacttttagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="77905" stop="80507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78181" g_stop="78582" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78583" i_stop="80119" i_length="1537">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80120" g_stop="80207" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="493" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E446606" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78181" e_stop="78582"/>
          <exon e_start="80120" e_stop="80207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCCGTCGACGATG-CCGACG-GCGAGAGTAATCGGAGCTCCGATTCATCGCATTGATAT-CCGCTGATTCCTTGTTTTTCCATTTCATTTCTTTGATCCTTGTTCCTGGCTGTTGTTGTGTTGAATTTAAACTTGTTTGTTGAAAGCTTCTGGAAATGTATAAGAACCAGTTACAGGAACTGGCACAAAGGAGTTGCTTCAACTTGCCGTCGTATACTTGTATAAGGGAAGGTCCGGATCATGCGCCTAGGTTTAAGGCTACGGTTAATTTCAATGGTGAGGTGTTTGAGAGTCCAAATTACTGCTCTACACTTCGACAGGCTGAACACTCTGCTGCTGAGGTTGCGTTGAATTCACTCTCTAATCGAGGTCCCTCCAACTCGCTTGCTGCTAGAATTCTGGTATTTTTGACCCCCGATTTTAGCGGGATTTTTAGTTTGCTTTCTTAATTATGCTTTTTCTTCTGAGTTTGGCTTTTTGAAAATGAATGACGTCATTTGATCTTATAAGCTACAACTTTTAGATTTAATGTATATTCATTTGTGGGATTGAGTATGTTGTTGTATTTGCATTTGTGAATTTTCTAGGTTTCAGGGACCATTGGTTTTCTAAACCCTTGGTGTGCTAATTACCCTGGGGGTGGGTAGCTGGCACGCTGTACCGATCGGATTAGTCTGGACTCATGTGCACATAAACTAGCCCGGACACTTACATTAGAGAAAAGTTAATAAATATTGGTCATTTGTACTAAGATGATCTAAGAAGTCTAGTTGTGTGAGGTTGTGATATTATTAGTTTACTTTAGTTTCTTGATCAGTATTTGCAATTTTTCCTTTTATAGATATTTCCTTTTCTCTTCTTGTTTTTTCCTAGTTTGATTTATGGGAATTATCTGCCTATGTGTGCTTCGGAAAGCATATTCAGTCCCAAATTTCTGTCGTAGGTTGATGGCCAATGTAGTTAACTATGATGAATTTCGTGAACTTGTCATAGTTCAGGAGGGAAGCAGAGCTCCCTGTTATGTGGCTGTTAATAATGAGCAGTTTATAGTACTGGCTTAGGTATGGGTTGGGTGAAAACAATAACTAGTAATTTTAGGCATGTTTTCATGGAAGTTACAAATGTATGGAATGGTGATTTTCTTGTGATTTCCTTTTGTAAGTGAAGTAGAGGGTAGATGTTGTGGCATTTCTGGAGTCATTATCTTAATATATCTGTTTGTCCTTACAAAAAAAGGAATATTGATTTGTTAGTAGTCCTCTTCTGACTGTTTTCCCTTGTTTTCAGGCATTAGAATTCTTAGTTTTTCGCACTGTGCAACGTGAATAAACTTAAGCACCAGTATTAGGTAGGAACTTTTTGTATGGCCAACCTAGAAGCCATGTATCTTGTAGTCTAGACTGGGTACTACATTACATTCACTAAATGACTGTTCAAAACCTTTAGGTCAGTCAAGCTACCATAGTAGTCTGAAGATGGTGCTTCTGTTGTTAGGGTTCTAATATAAGACGGTCAGATCTGAGTCCAGAACTTCTGGAGGACATTGCCAACTTGTGATGGTCCTGTAGGTAGTTAGACGCAATATGTAAAGTTGCATCATTGCCAACTTCTGATAGTCCTGTAGGTAGTTAGACTCAAGATGTAAAGTTGCATCATTTCTGTATCATGATAATCTTGTTGTTAAGTATATTTAGTGTTAAAACAAATCTTAGATTTTCCAACTAATATCAAAGTTTTTGTTGCAGTAAAAAATGATAGCACAGGTGCAAGTGAGCTCAACATCATCACAATAAAATATGGCCTCCATTGATTTTATGTAGTACCTAATTGTTTTAAATTAATATAGGACACTTAGACTTAGATATGAAAGAACAAACCTTTGTGGTTGCTTCTGAATGGCATTTTGGTTTCTAATTTCTGTATGCCCATGATTTGTAGGATGAGACAGGCGTATATAAGAATCTCTTACAGGAAGTTTCACAAAGAGTAGGAGCATCATTGCCAGCATATACTACTTTTAGATCTG</genome_strand>
        <mrna_strand>CGAGAGCGTCGACGATGCCCGACGACCGAGTGTAATCGGAGCTCCGATTCATCTCATTGATATCCCGCTGATTCCTACTTTTTCCATTTCATTCCTTTGATCCTTGTTCCTGGCTGTTGTTGTGTTGAATTTGAACTTGTTTGTTGAAAGCTTCTGGAAATGTATAAGAACCAGTTACAGGAACTGGCACAAAGGAGTTGCTTCAACTTGCCGTCGTATACTTGTATAAGGGAAGGTCCGGATCATGCGCCTAGGTTTAAGGCTACGGTTAATTTCAATGGTGAGGTCTTTGAGAGTCCAAATTACTGCTCGACACTTCGACAGGCTGAACACTCTGCTGCTGAGGTTGCGTTGAATTCACTCTCTAATCGAGGTCCCTCCAACTCGCTTGCTGCTAGAATTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGACAGGCGTATATAAGAATCTCTTACAGGAAGTTTCACAAAGAGTAGGAGCATCATTGCCAGCATATACTACTTTTAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580382" ref_strand="+" ref_description="SGN-E580382 [5625]">
      <seq>gaactgggacaaaggagttgcttcaacttgccgtcgtatacttgtataagggaaggtccggatcatgcgcctaggtttaaggctacggttaatttcaatggtgaggtctctgagagtccacattactgtctacacttcgacaggctgaacattctgctgctgaggttgcgttgaattcactctctaatcgaggtccctccaactcgcttggctgctagaattctggatgagacaggcgtatataagaatctcttacaggaagtttcacaaaagagtaggagcatcattgccagcatatacgacttttaagatctggtctaggacatcttcctgtcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0141A12-n6DfT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0141A12.2" temp_strand="+" temp_description="C05HBa0141A12.2  AC196190.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0141A12 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0141A12">
        <position start="78058" stop="80531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78358" g_stop="78582" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78583" i_stop="80119" i_length="1537">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80120" g_stop="80231" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="339" r_length="114" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0141A12.2" gen_strand="+" ref_id="SGN-E580382" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0141A12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E580382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78358" e_stop="78582"/>
          <exon e_start="80120" e_stop="80231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTGGCACAAAGGAGTTGCTTCAACTTGCCGTCGTATACTTGTATAAGGGAAGGTCCGGATCATGCGCCTAGGTTTAAGGCTACGGTTAATTTCAATGGTGAGGTGTTTGAGAGTCCAAATTACTGCTCTACACTTCGACAGGCTGAACACTCTGCTGCTGAGGTTGCGTTGAATTCACTCTCTAATCGAGGTCCCTCCAACTCGCTT-GCTGCTAGAATTCTGGTATTTTTGACCCCCGATTTTAGCGGGATTTTTAGTTTGCTTTCTTAATTATGCTTTTTCTTCTGAGTTTGGCTTTTTGAAAATGAATGACGTCATTTGATCTTATAAGCTACAACTTTTAGATTTAATGTATATTCATTTGTGGGATTGAGTATGTTGTTGTATTTGCATTTGTGAATTTTCTAGGTTTCAGGGACCATTGGTTTTCTAAACCCTTGGTGTGCTAATTACCCTGGGGGTGGGTAGCTGGCACGCTGTACCGATCGGATTAGTCTGGACTCATGTGCACATAAACTAGCCCGGACACTTACATTAGAGAAAAGTTAATAAATATTGGTCATTTGTACTAAGATGATCTAAGAAGTCTAGTTGTGTGAGGTTGTGATATTATTAGTTTACTTTAGTTTCTTGATCAGTATTTGCAATTTTTCCTTTTATAGATATTTCCTTTTCTCTTCTTGTTTTTTCCTAGTTTGATTTATGGGAATTATCTGCCTATGTGTGCTTCGGAAAGCATATTCAGTCCCAAATTTCTGTCGTAGGTTGATGGCCAATGTAGTTAACTATGATGAATTTCGTGAACTTGTCATAGTTCAGGAGGGAAGCAGAGCTCCCTGTTATGTGGCTGTTAATAATGAGCAGTTTATAGTACTGGCTTAGGTATGGGTTGGGTGAAAACAATAACTAGTAATTTTAGGCATGTTTTCATGGAAGTTACAAATGTATGGAATGGTGATTTTCTTGTGATTTCCTTTTGTAAGTGAAGTAGAGGGTAGATGTTGTGGCATTTCTGGAGTCATTATCTTAATATATCTGTTTGTCCTTACAAAAAAAGGAATATTGATTTGTTAGTAGTCCTCTTCTGACTGTTTTCCCTTGTTTTCAGGCATTAGAATTCTTAGTTTTTCGCACTGTGCAACGTGAATAAACTTAAGCACCAGTATTAGGTAGGAACTTTTTGTATGGCCAACCTAGAAGCCATGTATCTTGTAGTCTAGACTGGGTACTACATTACATTCACTAAATGACTGTTCAAAACCTTTAGGTCAGTCAAGCTACCATAGTAGTCTGAAGATGGTGCTTCTGTTGTTAGGGTTCTAATATAAGACGGTCAGATCTGAGTCCAGAACTTCTGGAGGACATTGCCAACTTGTGATGGTCCTGTAGGTAGTTAGACGCAATATGTAAAGTTGCATCATTGCCAACTTCTGATAGTCCTGTAGGTAGTTAGACTCAAGATGTAAAGTTGCATCATTTCTGTATCATGATAATCTTGTTGTTAAGTATATTTAGTGTTAAAACAAATCTTAGATTTTCCAACTAATATCAAAGTTTTTGTTGCAGTAAAAAATGATAGCACAGGTGCAAGTGAGCTCAACATCATCACAATAAAATATGGCCTCCATTGATTTTATGTAGTACCTAATTGTTTTAAATTAATATAGGACACTTAGACTTAGATATGAAAGAACAAACCTTTGTGGTTGCTTCTGAATGGCATTTTGGTTTCTAATTTCTGTATGCCCATGATTTGTAGGATGAGACAGGCGTATATAAGAATCTCTTACAGGAAGTTTCAC-AAAGAGTAGGAGCATCATTGCCAGCATATACTACTTTT-AGATCTGGTCTAGGACATCTTCCTGTCTTTA</genome_strand>
        <mrna_strand>GAACTGGGACAAAGGAGTTGCTTCAACTTGCCGTCGTATACTTGTATAAGGGAAGGTCCGGATCATGCGCCTAGGTTTAAGGCTACGGTTAATTTCAATGGTGAGGTCTCTGAGAGTCCACATTACTG-TCTACACTTCGACAGGCTGAACATTCTGCTGCTGAGGTTGCGTTGAATTCACTCTCTAATCGAGGTCCCTCCAACTCGCTTGGCTGCTAGAATTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGACAGGCGTATATAAGAATCTCTTACAGGAAGTTTCACAAAAGAGTAGGAGCATCATTGCCAGCATATACGACTTTTAAGATCTGGTCTAGGACATCTTCCTGTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>364</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="610" PGL_stop="3113"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="610" e_stop="791"/>
            <exon e_start="900" e_stop="976"/>
            <exon e_start="1053" e_stop="1092"/>
            <exon e_start="1356" e_stop="1413"/>
            <exon e_start="1865" e_stop="1934"/>
            <exon e_start="2708" e_stop="3113"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.860" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="610" e_stop="791" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.989">
            <gDNA_intron_boundary i_start="792" i_stop="899" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="900" e_stop="976" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="977" i_stop="1052" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1053" e_stop="1092" e_length="40"/>
          </exon>
          <intron i_serial="3" don_prob="0.894" acc_prob="0.948">
            <gDNA_intron_boundary i_start="1093" i_stop="1355" i_length="263"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1356" e_stop="1413" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="1414" i_stop="1864" i_length="451"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1865" e_stop="1934" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.860" acc_prob="0.973">
            <gDNA_intron_boundary i_start="1935" i_stop="2707" i_length="773"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2708" e_stop="3113" e_length="406"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="610" stop="791"/>
              <exon start="900" stop="976"/>
              <exon start="1053" stop="1092"/>
              <exon start="1356" stop="1413"/>
              <exon start="1865" stop="1934"/>
              <exon start="2708" stop="2984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="610" stop="791"/>
              <exon start="900" stop="976"/>
              <exon start="1053" stop="1092"/>
              <exon start="1356" stop="1413"/>
              <exon start="1865" stop="1934"/>
              <exon start="2708" stop="2943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="610" stop="791"/>
              <exon start="900" stop="976"/>
              <exon start="1053" stop="1092"/>
              <exon start="1356" stop="1413"/>
              <exon start="1865" stop="1934"/>
              <exon start="2708" stop="2872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="610" stop="791"/>
              <exon start="900" stop="976"/>
              <exon start="1053" stop="1092"/>
              <exon start="1356" stop="1413"/>
              <exon start="1865" stop="1934"/>
              <exon start="2708" stop="2829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="610" stop="791"/>
              <exon start="900" stop="976"/>
              <exon start="1053" stop="1092"/>
              <exon start="1356" stop="1413"/>
              <exon start="1865" stop="1934"/>
              <exon start="2708" stop="2798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="610" stop="791"/>
              <exon start="900" stop="976"/>
              <exon start="1053" stop="1092"/>
              <exon start="1356" stop="1413"/>
              <exon start="1865" stop="1934"/>
              <exon start="2708" stop="2775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="612" stop="791"/>
              <exon start="900" stop="976"/>
              <exon start="1053" stop="1092"/>
              <exon start="1356" stop="1413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="669" stop="791"/>
              <exon start="900" stop="976"/>
              <exon start="1053" stop="1092"/>
              <exon start="1356" stop="1413"/>
              <exon start="1865" stop="1934"/>
              <exon start="2708" stop="3113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1086" stop="1092"/>
              <exon start="1356" stop="1413"/>
              <exon start="1865" stop="1934"/>
              <exon start="2708" stop="3071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321176" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCATGCTGGCCAGTCCGATACTCTTCCTCCTCCTCTTCCTGCTGCTGCTGCATCGTCTGGGCAAAACTACCCAGTTGGTAGCCCATCGTCTACCGCAGCACAGACGAAACCTCGGATGCGATGGACACCCGAGCTTCACGAAGTCTTTGTAGAAGCTATCAGTAAGCTTGGTGGGAGCGAAA : AAGCTACACCAAAGGGAGTCTTGAAGCTCATGAATGTTGAAGGCCTAACCATCTATCATGTCAAAAGCCACTTACAG : AAATATAGAACTGCCAGATACAAACCAGAATCCTCGGAAG : GAACACCGGAAAAGAAGACCACCAGTGTGACAGAGATGCCATCTTTGGACCTGATAAC : GACCATGGGGATAACAGAAGCACTAAGAATGCAGATGGAAGTCCAAAAGCAGCTTCACGAACAACTTGAG : ATCCAGAGAAAGTTGCAGTTGCGGATCGAAGAACAAGGTAAATACCTTGAAATGATGTTTGAGAAGACAAAGGACATAGGAAAAGATCTAAAGGTATCATCATCATCAAGAACAGATGAACATCCTTCACCATCCAATAAGATGAAGCATACATCTCCCAACGACTAATCAGAAGCACTCGAGAAAGATCGTTTGTGGAACTCACCAGACAAAAAAGCTCATGAAGATCATGACTCAGATGATAGAGACTTGTGTTGTTCACCTACATCGAAACGAGCAAAAACAGAGGAAATATCAGGTCTTCATGAATCTTGACAGACTCATTTGATATGTGAATTGTCTTTGCAAAATGCTGTTGACTTGATGAAAGCTTTTGGCTAATAATTGTGTCATTTTTCCTTGTTTC</gDNA_template>
            <first_frame> P  C  W  P  V  R  Y  S  S  S  S  S  S  C  C  C  C  I  V  W  A  K  L  P  S  W  *  P  I  V  Y  R  S  T  D  E  T  S  D  A  M  D  T  R  A  S  R  S  L  C  R  S  Y  Q  *  A  W  W  E  R  K :   S  Y  T  K  G  S  L  E  A  H  E  C  *  R  P  N  H  L  S  C  Q  K  P  L  T   : E  I  *  N  C  Q  I  Q  T  R  I  L  G  R :   N  T  G  K  E  D  H  Q  C  D  R  D  A  I  F  G  P  D  N  :  D  H  G  D  N  R  S  T  K  N  A  D  G  S  P  K  A  A  S  R  T  T  *   : D  P  E  K  V  A  V  A  D  R  R  T  R  *  I  P  *  N  D  V  *  E  D  K  G  H  R  K  R  S  K  G  I  I  I  I  K  N  R  *  T  S  F  T  I  Q  *  D  E  A  Y  I  S  Q  R  L  I  R  S  T  R  E  R  S  F  V  E  L  T  R  Q  K  S  S  *  R  S  *  L  R  *  *  R  L  V  L  F  T  Y  I  E  T  S  K  N  R  G  N  I  R  S  S  *  I  L  T  D  S  F  D  M  *  I  V  F  A  K  C  C  *  L  D  E  S  F  W  L  I  I  V  S  F  F  L  V   </first_frame>
            <second_frame>  H  A  G  Q  S  D  T  L  P  P  P  L  P  A  A  A  A  S  S  G  Q  N  Y  P  V  G  S  P  S  S  T  A  A  Q  T  K  P  R  M  R  W  T  P  E  L  H  E  V  F  V  E  A  I  S  K  L  G  G  S  E   : K  A  T  P  K  G  V  L  K  L  M  N  V  E  G  L  T  I  Y  H  V  K  S  H  L  Q  :  K  Y  R  T  A  R  Y  K  P  E  S  S  E   : G  T  P  E  K  K  T  T  S  V  T  E  M  P  S  L  D  L  I  T :   T  M  G  I  T  E  A  L  R  M  Q  M  E  V  Q  K  Q  L  H  E  Q  L  E  :  I  Q  R  K  L  Q  L  R  I  E  E  Q  G  K  Y  L  E  M  M  F  E  K  T  K  D  I  G  K  D  L  K  V  S  S  S  S  R  T  D  E  H  P  S  P  S  N  K  M  K  H  T  S  P  N  D  *  S  E  A  L  E  K  D  R  L  W  N  S  P  D  K  K  A  H  E  D  H  D  S  D  D  R  D  L  C  C  S  P  T  S  K  R  A  K  T  E  E  I  S  G  L  H  E  S  *  Q  T  H  L  I  C  E  L  S  L  Q  N  A  V  D  L  M  K  A  F  G  *  *  L  C  H  F  S  L  F  </second_frame>
            <third_frame>   M  L  A  S  P  I  L  F  L  L  L  F  L  L  L  L  H  R  L  G  K  T  T  Q  L  V  A  H  R  L  P  Q  H  R  R  N  L  G  C  D  G  H  P  S  F  T  K  S  L  *  K  L  S  V  S  L  V  G  A  K  :  K  L  H  Q  R  E  S  *  S  S  *  M  L  K  A  *  P  S  I  M  S  K  A  T  Y  R :   N  I  E  L  P  D  T  N  Q  N  P  R  K  :  E  H  R  K  R  R  P  P  V  *  Q  R  C  H  L  W  T  *  *   : R  P  W  G  *  Q  K  H  *  E  C  R  W  K  S  K  S  S  F  T  N  N  L  R :   S  R  E  S  C  S  C  G  S  K  N  K  V  N  T  L  K  *  C  L  R  R  Q  R  T  *  E  K  I  *  R  Y  H  H  H  Q  E  Q  M  N  I  L  H  H  P  I  R  *  S  I  H  L  P  T  T  N  Q  K  H  S  R  K  I  V  C  G  T  H  Q  T  K  K  L  M  K  I  M  T  Q  M  I  E  T  C  V  V  H  L  H  R  N  E  Q  K  Q  R  K  Y  Q  V  F  M  N  L  D  R  L  I  *  Y  V  N  C  L  C  K  M  L  L  T  *  *  K  L  L  A  N  N  C  V  I  F  P  C  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="611" stop="791"/>
                    <exon start="900" stop="976"/>
                    <exon start="1053" stop="1092"/>
                    <exon start="1356" stop="1413"/>
                    <exon start="1865" stop="1934"/>
                    <exon start="2708" stop="2875"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HAGQSDTLPPPLPAAAASSGQNYPVGSPSSTAAQTKPRMRWTPELHEVFVEAISKLGGSEKATPKGVLKLMNVEGLTIYHVKSHLQKYRTARYKPESSEGTPEKKTTSVTEMPSLDLITTMGITEALRMQMEVQKQLHEQLEIQRKLQLRIEEQGKYLEMMFEKTKDIGKDLKVSSSSRTDEHPSPSNKMKHTSPND*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="739" e_stop="1324"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="739" e_stop="1324" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="739" stop="1324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337666" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGCTTCACGAAGTCTTTGTAGAAGCTATCAGTAAGCTTGGTGGGAGCGAAAGTGCGTGACCTCTTTGTTTCTATGTTCTATTTCTCTTTTTAGCAGTTTGGATGAGTAAGAGTTAACGTTTAACATTATTATATTGGATTCACACATTTGACTTTACAGAAGCTACACCAAAGGGAGTCTTGAAGCTCATGAATGTTGAAGGCCTAACCATCTATCATGTCAAAAGCCACTTACAGGTATAATAAATCCTTCCCATTAACCTTTTCCGAGGTGACAATTTATTTACCTTATACATTTCATTTTGAATTTCAGAAATATAGAACTGCCAGATACAAACCAGAATCCTCGGAAGGTAGAAATTTCCTCTTTGATTAGCTGATAACTTTTGCATCCGTCAAGGACTCAGTATACATTTTGCTAAAACGAAAACATATGTGTTACATCTCCTCATACTTGTACTTCCTGCCTCTCTAGTTTCTTGTGCATGTGTCAAAGTGATCCCCAACTGTGAATAAAACTAGGGATCTTAAGTTAAATTTATTGATGGTCTGTTGGACTTCCCCACAGTTTTTGAGATGAGAAGA</gDNA_template>
            <first_frame> R  A  S  R  S  L  C  R  S  Y  Q  *  A  W  W  E  R  K  C  V  T  S  L  F  L  C  S  I  S  L  F  S  S  L  D  E  *  E  L  T  F  N  I  I  I  L  D  S  H  I  *  L  Y  R  S  Y  T  K  G  S  L  E  A  H  E  C  *  R  P  N  H  L  S  C  Q  K  P  L  T  G  I  I  N  P  S  H  *  P  F  P  R  *  Q  F  I  Y  L  I  H  F  I  L  N  F  R  N  I  E  L  P  D  T  N  Q  N  P  R  K  V  E  I  S  S  L  I  S  *  *  L  L  H  P  S  R  T  Q  Y  T  F  C  *  N  E  N  I  C  V  T  S  P  H  T  C  T  S  C  L  S  S  F  L  C  M  C  Q  S  D  P  Q  L  *  I  K  L  G  I  L  S  *  I  Y  *  W  S  V  G  L  P  H  S  F  *  D  E  K  </first_frame>
            <second_frame>  E  L  H  E  V  F  V  E  A  I  S  K  L  G  G  S  E  S  A  *  P  L  C  F  Y  V  L  F  L  F  L  A  V  W  M  S  K  S  *  R  L  T  L  L  Y  W  I  H  T  F  D  F  T  E  A  T  P  K  G  V  L  K  L  M  N  V  E  G  L  T  I  Y  H  V  K  S  H  L  Q  V  *  *  I  L  P  I  N  L  F  R  G  D  N  L  F  T  L  Y  I  S  F  *  I  S  E  I  *  N  C  Q  I  Q  T  R  I  L  G  R  *  K  F  P  L  *  L  A  D  N  F  C  I  R  Q  G  L  S  I  H  F  A  K  T  K  T  Y  V  L  H  L  L  I  L  V  L  P  A  S  L  V  S  C  A  C  V  K  V  I  P  N  C  E  *  N  *  G  S  *  V  K  F  I  D  G  L  L  D  F  P  T  V  F  E  M  R  R </second_frame>
            <third_frame>   S  F  T  K  S  L  *  K  L  S  V  S  L  V  G  A  K  V  R  D  L  F  V  S  M  F  Y  F  S  F  *  Q  F  G  *  V  R  V  N  V  *  H  Y  Y  I  G  F  T  H  L  T  L  Q  K  L  H  Q  R  E  S  *  S  S  *  M  L  K  A  *  P  S  I  M  S  K  A  T  Y  R  Y  N  K  S  F  P  L  T  F  S  E  V  T  I  Y  L  P  Y  T  F  H  F  E  F  Q  K  Y  R  T  A  R  Y  K  P  E  S  S  E  G  R  N  F  L  F  D  *  L  I  T  F  A  S  V  K  D  S  V  Y  I  L  L  K  R  K  H  M  C  Y  I  S  S  Y  L  Y  F  L  P  L  *  F  L  V  H  V  S  K  *  S  P  T  V  N  K  T  R  D  L  K  L  N  L  L  M  V  C  W  T  S  P  Q  F  L  R  *  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0141A12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8714" PGL_stop="8423"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8714" e_stop="8423"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="8714" e_stop="8423" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8714" stop="8423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8714" stop="8423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8713" stop="8423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364266" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAAAAAAGTATGTATAACTTTGCTCCTTGGGATCTCACCATAAGTGGTAAGTTGATGATTATGCCATGAACATTGCTTGGGGCAAATTTTGTCAAATTTTCACTCATTGGCATATGAAACTTTGAAAGTTAAAGGGCAAGACTGAAAACTAATTTTGTTTCTGAAGTGATGTTACAAGACTCTATATTTGAGTGCTCCCATTACTTTTCTTGAATTCAACTTGTTTTTCTTGTCAACATTCATTTAATCCAAATAAATTTTCTTTTTTACTTGTGTTTAGATGTTTGCA</gDNA_template>
            <first_frame> K  K  K  S  M  Y  N  F  A  P  W  D  L  T  I  S  G  K  L  M  I  M  P  *  T  L  L  G  A  N  F  V  K  F  S  L  I  G  I  *  N  F  E  S  *  R  A  R  L  K  T  N  F  V  S  E  V  M  L  Q  D  S  I  F  E  C  S  H  Y  F  S  *  I  Q  L  V  F  L  V  N  I  H  L  I  Q  I  N  F  L  F  Y  L  C  L  D  V  C  </first_frame>
            <second_frame>  R  K  K  V  C  I  T  L  L  L  G  I  S  P  *  V  V  S  *  *  L  C  H  E  H  C  L  G  Q  I  L  S  N  F  H  S  L  A  Y  E  T  L  K  V  K  G  Q  D  *  K  L  I  L  F  L  K  *  C  Y  K  T  L  Y  L  S  A  P  I  T  F  L  E  F  N  L  F  F  L  S  T  F  I  *  S  K  *  I  F  F  F  T  C  V  *  M  F  A </second_frame>
            <third_frame>   E  K  K  Y  V  *  L  C  S  L  G  S  H  H  K  W  *  V  D  D  Y  A  M  N  I  A  W  G  K  F  C  Q  I  F  T  H  W  H  M  K  L  *  K  L  K  G  K  T  E  N  *  F  C  F  *  S  D  V  T  R  L  Y  I  *  V  L  P  L  L  F  L  N  S  T  C  F  S  C  Q  H  S  F  N  P  N  K  F  S  F  L  L  V  F  R  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0141A12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="16597" PGL_stop="14045"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16597" e_stop="16431"/>
            <exon e_start="14672" e_stop="14045"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="0.994"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="16597" e_stop="16431" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="16430" i_stop="14673" i_length="1758"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="14672" e_stop="14045" e_length="628"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16597" stop="16431"/>
              <exon start="14672" stop="14303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16540" stop="16431"/>
              <exon start="14672" stop="14126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16481" stop="16431"/>
              <exon start="14672" stop="14246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16480" stop="16431"/>
              <exon start="14672" stop="14247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14629" stop="14045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212312" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCACCCCCCTCTCTCTCCCTCCTTCTATCACCCTTTTCCACATTGTAAAGAAACAATTTTTTTTTCTCTTTGTCGCAAGAGAAAATCCATTCTTTTTTATTTTGTCAAAATCTGAGTTAAGGGGGGTCTTCCATTGCCACACCTAATTGGAAATCTCTGATGCAAG : GCTTTGGGTAAATATTCTATTTAGTTAGCTAATGCTTTCCGGGTATGCAGATTAACTGTATGCATTTCTAGATATATGCGCAAAGTCTGGAACTTTTTGCAAGATTTACAGCATAGGGTCTCAAGCTGGGGTGTTGATTGTGAAACAATTGGTGTTTGATTAGTCTTTTGATTGCTTGATCATTTGGGTTGCTTGATATATGCACAAGTACGGGACTTTGACAAGATTTAGGAATAATTGTGTTTTTGCAAGTACTTGATTGCCTAGACCATTTGGGTGAGTTGATAATAGCAGTATCATGCAAAGGTATGGTGACAAGTACATGGAAAAAGTATGTATACCCTTGTTGGAAGCCTACATTAGATAATGAAGGTGAAAATAGCAGCAGTAGAGGAGGAGACCCTGGCGGAAGTGTTGATGGATTGTGGTGGTATAAAGATTTGGGGCACCATGTTAACGGGGAGTTCTCGATGGCTGTAATTCAAGCGAATAATATATTGGAGGATCAGAGCCAGCTTGAATCGGGATCAATGAGTTTGTTTGAATCAGGTCCTCAGGGCACCTTTGTAGGAATATATGATGGCCATGCAGGTGCCGAAGCTGCCCGGTTTATAAATGGTCGCCTTTT</gDNA_template>
            <first_frame> P  T  P  L  S  L  P  P  S  I  T  L  F  H  I  V  K  K  Q  F  F  F  L  F  V  A  R  E  N  P  F  F  F  I  L  S  K  S  E  L  R  G  V  F  H  C  H  T  *  L  E  I  S  D  A  R :   L  W  V  N  I  L  F  S  *  L  M  L  S  G  Y  A  D  *  L  Y  A  F  L  D  I  C  A  K  S  G  T  F  C  K  I  Y  S  I  G  S  Q  A  G  V  L  I  V  K  Q  L  V  F  D  *  S  F  D  C  L  I  I  W  V  A  *  Y  M  H  K  Y  G  T  L  T  R  F  R  N  N  C  V  F  A  S  T  *  L  P  R  P  F  G  *  V  D  N  S  S  I  M  Q  R  Y  G  D  K  Y  M  E  K  V  C  I  P  L  L  E  A  Y  I  R  *  *  R  *  K  *  Q  Q  *  R  R  R  P  W  R  K  C  *  W  I  V  V  V  *  R  F  G  A  P  C  *  R  G  V  L  D  G  C  N  S  S  E  *  Y  I  G  G  S  E  P  A  *  I  G  I  N  E  F  V  *  I  R  S  S  G  H  L  C  R  N  I  *  W  P  C  R  C  R  S  C  P  V  Y  K  W  S  P  F </first_frame>
            <second_frame>  P  P  P  S  L  S  L  L  L  S  P  F  S  T  L  *  R  N  N  F  F  F  S  L  S  Q  E  K  I  H  S  F  L  F  C  Q  N  L  S  *  G  G  S  S  I  A  T  P  N  W  K  S  L  M  Q   : G  F  G  *  I  F  Y  L  V  S  *  C  F  P  G  M  Q  I  N  C  M  H  F  *  I  Y  A  Q  S  L  E  L  F  A  R  F  T  A  *  G  L  K  L  G  C  *  L  *  N  N  W  C  L  I  S  L  L  I  A  *  S  F  G  L  L  D  I  C  T  S  T  G  L  *  Q  D  L  G  I  I  V  F  L  Q  V  L  D  C  L  D  H  L  G  E  L  I  I  A  V  S  C  K  G  M  V  T  S  T  W  K  K  Y  V  Y  P  C  W  K  P  T  L  D  N  E  G  E  N  S  S  S  R  G  G  D  P  G  G  S  V  D  G  L  W  W  Y  K  D  L  G  H  H  V  N  G  E  F  S  M  A  V  I  Q  A  N  N  I  L  E  D  Q  S  Q  L  E  S  G  S  M  S  L  F  E  S  G  P  Q  G  T  F  V  G  I  Y  D  G  H  A  G  A  E  A  A  R  F  I  N  G  R  L   </second_frame>
            <third_frame>   H  P  P  L  S  P  S  F  Y  H  P  F  P  H  C  K  E  T  I  F  F  S  L  C  R  K  R  K  S  I  L  F  Y  F  V  K  I  *  V  K  G  G  L  P  L  P  H  L  I  G  N  L  *  C  K  :  A  L  G  K  Y  S  I  *  L  A  N  A  F  R  V  C  R  L  T  V  C  I  S  R  Y  M  R  K  V  W  N  F  L  Q  D  L  Q  H  R  V  S  S  W  G  V  D  C  E  T  I  G  V  *  L  V  F  *  L  L  D  H  L  G  C  L  I  Y  A  Q  V  R  D  F  D  K  I  *  E  *  L  C  F  C  K  Y  L  I  A  *  T  I  W  V  S  *  *  *  Q  Y  H  A  K  V  W  *  Q  V  H  G  K  S  M  Y  T  L  V  G  S  L  H  *  I  M  K  V  K  I  A  A  V  E  E  E  T  L  A  E  V  L  M  D  C  G  G  I  K  I  W  G  T  M  L  T  G  S  S  R  W  L  *  F  K  R  I  I  Y  W  R  I  R  A  S  L  N  R  D  Q  *  V  C  L  N  Q  V  L  R  A  P  L  *  E  Y  M  M  A  M  Q  V  P  K  L  P  G  L  *  M  V  A  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14451" stop="14047"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QDLGIIVFLQVLDCLDHLGELIIAVSCKGMVTSTWKKYVYPCWKPTLDNEGENSSSRGGDPGGSVDGLWWYKDLGHHVNGEFSMAVIQANNILEDQSQLESGSMSLFESGPQGTFVGIYDGHAGAEAARFINGRL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="19102" PGL_stop="21379"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19102" e_stop="19332"/>
            <exon e_start="19837" e_stop="20132"/>
            <exon e_start="20334" e_stop="20475"/>
            <exon e_start="20915" e_stop="21164"/>
            <exon e_start="21311" e_stop="21328"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.921" acc_prob="1.000" e_score="0.874"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.932"/>
          <exon-intron don_prob="0.938" acc_prob="1.000" e_score="0.993"/>
          <exon-intron don_prob="0.000" acc_prob="0.412" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.874">
            <gDNA_exon_boundary e_start="19102" e_stop="19332" e_length="231"/>
          </exon>
          <intron i_serial="1" don_prob="0.921" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19333" i_stop="19836" i_length="504"/>
          </intron>
          <exon e_serial="2" e_score="0.932">
            <gDNA_exon_boundary e_start="19837" e_stop="20132" e_length="296"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20133" i_stop="20333" i_length="201"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="20334" e_stop="20475" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20476" i_stop="20914" i_length="439"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="20915" e_stop="21164" e_length="250"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.412">
            <gDNA_intron_boundary i_start="21165" i_stop="21310" i_length="146"/>
          </intron>
          <exon e_serial="5" e_score="0.667">
            <gDNA_exon_boundary e_start="21311" e_stop="21328" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19102" stop="19332"/>
              <exon start="19837" stop="20132"/>
              <exon start="20334" stop="20470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19102" stop="19332"/>
              <exon start="19837" stop="20132"/>
              <exon start="20334" stop="20402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19876" stop="20132"/>
              <exon start="20334" stop="20475"/>
              <exon start="20915" stop="21164"/>
              <exon start="21311" stop="21328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371460" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20118" stop="20132"/>
              <exon start="20334" stop="20475"/>
              <exon start="20915" stop="21164"/>
              <exon start="21311" stop="21328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280457" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCCAGCGCCATTTATTGGCGCGGCGGAGCTAAAGAAATGGGCCTTGTATAGGGCCTTAATTGCAGAGTTTGTAGCAACTCTTTTGTTACTTTACATTGGACAGTTAACCATAATGGGATATAAGAGTGAAAGTGATCATGATCCATGTGGTAGTGTTGGGCTTCTTGGTGTTGCTTGGGTCTTTGGTGGCATGGTTTTCATTCTTGTATATTGTACTGCTGGCATTTCTG : GTGGTCATATTAATCCAGCAGTGACCTTTGGGCTATTCCTTTCAAGGAAAATATCTTTAATAAGAGGCTTATTGTACATTGTAGTTCAATATTTGGGAGCCATTTGTGGTACTGCTCTAGTTAAGGCCATTTATAAATCTAAGTTCGAACTCTACGGTGGTGGCGTTAACTCGGTCAGCCCCGGCTATACTAGGGGCGTTGCATGGTCCGCGGAGATGATTGGAACATTTGTTCTTGTTTACACGGTTTTATCGGCCACTGACTCTAAGAGGAATGCTAGAGACTCACATGTTCCT : GTGTTGGCCCCTCTACCAATTGGATTTGCTGTGTTTTTGGTCCACTTGGCCACAATCCCAATTACTGGCACAGGGATCAACCCTGCTAGAAGTCTTGGAGCTGCTGTCATCTACAATCAACAAATAGCATGGGAGGACCCTT : GGGATCTTTTCTGGAGGACCTTTCACAGGAGCACTTATTGCAGCAATCTACCAACTAATACTGAGGGGATGCAAATGGAGATAAGTGATGCAACATATATTTGCTCTAGAATATGTGTTTGTGATTTATGAAGTTTAGTTTGAGGAAACAATGTTTGATTTGTGTTTGTTTTGATTGCATTAATCAGTTCAAAATTGAATCTTTTGCAAACAATTTTTTTTACTTTTATAATACGTTCAGTATTAAATCG : ATAAAGCGATAAAAGAAA</gDNA_template>
            <first_frame> R  Q  R  H  L  L  A  R  R  S  *  R  N  G  P  C  I  G  P  *  L  Q  S  L  *  Q  L  F  C  Y  F  T  L  D  S  *  P  *  W  D  I  R  V  K  V  I  M  I  H  V  V  V  L  G  F  L  V  L  L  G  S  L  V  A  W  F  S  F  L  Y  I  V  L  L  A  F  L  :  V  V  I  L  I  Q  Q  *  P  L  G  Y  S  F  Q  G  K  Y  L  *  *  E  A  Y  C  T  L  *  F  N  I  W  E  P  F  V  V  L  L  *  L  R  P  F  I  N  L  S  S  N  S  T  V  V  A  L  T  R  S  A  P  A  I  L  G  A  L  H  G  P  R  R  *  L  E  H  L  F  L  F  T  R  F  Y  R  P  L  T  L  R  G  M  L  E  T  H  M  F  L :   C  W  P  L  Y  Q  L  D  L  L  C  F  W  S  T  W  P  Q  S  Q  L  L  A  Q  G  S  T  L  L  E  V  L  E  L  L  S  S  T  I  N  K  *  H  G  R  T  L  :  G  I  F  S  G  G  P  F  T  G  A  L  I  A  A  I  Y  Q  L  I  L  R  G  C  K  W  R  *  V  M  Q  H  I  F  A  L  E  Y  V  F  V  I  Y  E  V  *  F  E  E  T  M  F  D  L  C  L  F  *  L  H  *  S  V  Q  N  *  I  F  C  K  Q  F  F  L  L  L  *  Y  V  Q  Y  *  I   : D  K  A  I  K  E  </first_frame>
            <second_frame>  A  S  A  I  Y  W  R  G  G  A  K  E  M  G  L  V  *  G  L  N  C  R  V  C  S  N  S  F  V  T  L  H  W  T  V  N  H  N  G  I  *  E  *  K  *  S  *  S  M  W  *  C  W  A  S  W  C  C  L  G  L  W  W  H  G  F  H  S  C  I  L  Y  C  W  H  F  W :   W  S  Y  *  S  S  S  D  L  W  A  I  P  F  K  E  N  I  F  N  K  R  L  I  V  H  C  S  S  I  F  G  S  H  L  W  Y  C  S  S  *  G  H  L  *  I  *  V  R  T  L  R  W  W  R  *  L  G  Q  P  R  L  Y  *  G  R  C  M  V  R  G  D  D  W  N  I  C  S  C  L  H  G  F  I  G  H  *  L  *  E  E  C  *  R  L  T  C  S   : C  V  G  P  S  T  N  W  I  C  C  V  F  G  P  L  G  H  N  P  N  Y  W  H  R  D  Q  P  C  *  K  S  W  S  C  C  H  L  Q  S  T  N  S  M  G  G  P  L :   G  S  F  L  E  D  L  S  Q  E  H  L  L  Q  Q  S  T  N  *  Y  *  G  D  A  N  G  D  K  *  C  N  I  Y  L  L  *  N  M  C  L  *  F  M  K  F  S  L  R  K  Q  C  L  I  C  V  C  F  D  C  I  N  Q  F  K  I  E  S  F  A  N  N  F  F  Y  F  Y  N  T  F  S  I  K  S  :  I  K  R  *  K  K </second_frame>
            <third_frame>   P  A  P  F  I  G  A  A  E  L  K  K  W  A  L  Y  R  A  L  I  A  E  F  V  A  T  L  L  L  L  Y  I  G  Q  L  T  I  M  G  Y  K  S  E  S  D  H  D  P  C  G  S  V  G  L  L  G  V  A  W  V  F  G  G  M  V  F  I  L  V  Y  C  T  A  G  I  S   : G  G  H  I  N  P  A  V  T  F  G  L  F  L  S  R  K  I  S  L  I  R  G  L  L  Y  I  V  V  Q  Y  L  G  A  I  C  G  T  A  L  V  K  A  I  Y  K  S  K  F  E  L  Y  G  G  G  V  N  S  V  S  P  G  Y  T  R  G  V  A  W  S  A  E  M  I  G  T  F  V  L  V  Y  T  V  L  S  A  T  D  S  K  R  N  A  R  D  S  H  V  P  :  V  L  A  P  L  P  I  G  F  A  V  F  L  V  H  L  A  T  I  P  I  T  G  T  G  I  N  P  A  R  S  L  G  A  A  V  I  Y  N  Q  Q  I  A  W  E  D  P   : W  D  L  F  W  R  T  F  H  R  S  T  Y  C  S  N  L  P  T  N  T  E  G  M  Q  M  E  I  S  D  A  T  Y  I  C  S  R  I  C  V  C  D  L  *  S  L  V  *  G  N  N  V  *  F  V  F  V  L  I  A  L  I  S  S  K  L  N  L  L  Q  T  I  F  F  T  F  I  I  R  S  V  L  N  R :   *  S  D  K  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19104" stop="19332"/>
                    <exon start="19837" stop="20132"/>
                    <exon start="20334" stop="20475"/>
                    <exon start="20915" stop="21045"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAPFIGAAELKKWALYRALIAEFVATLLLLYIGQLTIMGYKSESDHDPCGSVGLLGVAWVFGGMVFILVYCTAGISGGHINPAVTFGLFLSRKISLIRGLLYIVVQYLGAICGTALVKAIYKSKFELYGGGVNSVSPGYTRGVAWSAEMIGTFVLVYTVLSATDSKRNARDSHVPVLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAVIYNQQIAWEDPWDLFWRTFHRSTYCSNLPTNTEGMQMEISDATYICSRICVCDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19102" e_stop="19332"/>
            <exon e_start="19837" e_stop="20132"/>
            <exon e_start="20334" e_stop="20475"/>
            <exon e_start="20915" e_stop="21126"/>
            <exon e_start="21365" e_stop="21379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.921" acc_prob="1.000" e_score="0.874"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.932"/>
          <exon-intron don_prob="0.938" acc_prob="1.000" e_score="0.951"/>
          <exon-intron don_prob="0.000" acc_prob="0.964" e_score="0.901"/>
          <exon-only e_score="0.733"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.874">
            <gDNA_exon_boundary e_start="19102" e_stop="19332" e_length="231"/>
          </exon>
          <intron i_serial="1" don_prob="0.921" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19333" i_stop="19836" i_length="504"/>
          </intron>
          <exon e_serial="2" e_score="0.932">
            <gDNA_exon_boundary e_start="19837" e_stop="20132" e_length="296"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20133" i_stop="20333" i_length="201"/>
          </intron>
          <exon e_serial="3" e_score="0.951">
            <gDNA_exon_boundary e_start="20334" e_stop="20475" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20476" i_stop="20914" i_length="439"/>
          </intron>
          <exon e_serial="4" e_score="0.901">
            <gDNA_exon_boundary e_start="20915" e_stop="21126" e_length="212"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.964">
            <gDNA_intron_boundary i_start="21127" i_stop="21364" i_length="238"/>
          </intron>
          <exon e_serial="5" e_score="0.733">
            <gDNA_exon_boundary e_start="21365" e_stop="21379" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19102" stop="19332"/>
              <exon start="19837" stop="20132"/>
              <exon start="20334" stop="20470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19102" stop="19332"/>
              <exon start="19837" stop="20132"/>
              <exon start="20334" stop="20402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19223" stop="19332"/>
              <exon start="19837" stop="20132"/>
              <exon start="20334" stop="20475"/>
              <exon start="20915" stop="21126"/>
              <exon start="21365" stop="21379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432924" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCCAGCGCCATTTATTGGCGCGGCGGAGCTAAAGAAATGGGCCTTGTATAGGGCCTTAATTGCAGAGTTTGTAGCAACTCTTTTGTTACTTTACATTGGACAGTTAACCATAATGGGATATAAGAGTGAAAGTGATCATGATCCATGTGGTAGTGTTGGGCTTCTTGGTGTTGCTTGGGTCTTTGGTGGCATGGTTTTCATTCTTGTATATTGTACTGCTGGCATTTCTG : GTGGTCATATTAATCCAGCAGTGACCTTTGGGCTATTCCTTTCAAGGAAAATATCTTTAATAAGAGGCTTATTGTACATTGTAGTTCAATATTTGGGAGCCATTTGTGGTACTGCTCTAGTTAAGGCCATTTATAAATCTAAGTTCGAACTCTACGGTGGTGGCGTTAACTCGGTCAGCCCCGGCTATACTAGGGGCGTTGCATGGTCCGCGGAGATGATTGGAACATTTGTTCTTGTTTACACGGTTTTATCGGCCACTGACTCTAAGAGGAATGCTAGAGACTCACATGTTCCT : GTGTTGGCCCCTCTACCAATTGGATTTGCTGTGTTTTTGGTCCACTTGGCCACAATCCCAATTACTGGCACAGGGATCAACCCTGCTAGAAGTCTTGGAGCTGCTGTCATCTACAATCAACAAATAGCATGGGAGGACCCTT : GGGATCTTTTCTGGAGGACCTTTCACAGGAGCACTTATTGCAGCAATCTACCAACTAATACTGAGGGGATGCAAATGGAGATAAGTGATGCAACATATATTTGCTCTAGAATATGTGTTTGTGATTTATGAAGTTTAGTTTGAGGAAACAATGTTTGATTTGTGTTTGTTTTGATTGCATTAATCAGTTCAAAATTGAATCTTTTGCAAACA : AAAGAAGGAAAGAGA</gDNA_template>
            <first_frame> R  Q  R  H  L  L  A  R  R  S  *  R  N  G  P  C  I  G  P  *  L  Q  S  L  *  Q  L  F  C  Y  F  T  L  D  S  *  P  *  W  D  I  R  V  K  V  I  M  I  H  V  V  V  L  G  F  L  V  L  L  G  S  L  V  A  W  F  S  F  L  Y  I  V  L  L  A  F  L  :  V  V  I  L  I  Q  Q  *  P  L  G  Y  S  F  Q  G  K  Y  L  *  *  E  A  Y  C  T  L  *  F  N  I  W  E  P  F  V  V  L  L  *  L  R  P  F  I  N  L  S  S  N  S  T  V  V  A  L  T  R  S  A  P  A  I  L  G  A  L  H  G  P  R  R  *  L  E  H  L  F  L  F  T  R  F  Y  R  P  L  T  L  R  G  M  L  E  T  H  M  F  L :   C  W  P  L  Y  Q  L  D  L  L  C  F  W  S  T  W  P  Q  S  Q  L  L  A  Q  G  S  T  L  L  E  V  L  E  L  L  S  S  T  I  N  K  *  H  G  R  T  L  :  G  I  F  S  G  G  P  F  T  G  A  L  I  A  A  I  Y  Q  L  I  L  R  G  C  K  W  R  *  V  M  Q  H  I  F  A  L  E  Y  V  F  V  I  Y  E  V  *  F  E  E  T  M  F  D  L  C  L  F  *  L  H  *  S  V  Q  N  *  I  F  C  K  Q :   K  K  E  R   </first_frame>
            <second_frame>  A  S  A  I  Y  W  R  G  G  A  K  E  M  G  L  V  *  G  L  N  C  R  V  C  S  N  S  F  V  T  L  H  W  T  V  N  H  N  G  I  *  E  *  K  *  S  *  S  M  W  *  C  W  A  S  W  C  C  L  G  L  W  W  H  G  F  H  S  C  I  L  Y  C  W  H  F  W :   W  S  Y  *  S  S  S  D  L  W  A  I  P  F  K  E  N  I  F  N  K  R  L  I  V  H  C  S  S  I  F  G  S  H  L  W  Y  C  S  S  *  G  H  L  *  I  *  V  R  T  L  R  W  W  R  *  L  G  Q  P  R  L  Y  *  G  R  C  M  V  R  G  D  D  W  N  I  C  S  C  L  H  G  F  I  G  H  *  L  *  E  E  C  *  R  L  T  C  S   : C  V  G  P  S  T  N  W  I  C  C  V  F  G  P  L  G  H  N  P  N  Y  W  H  R  D  Q  P  C  *  K  S  W  S  C  C  H  L  Q  S  T  N  S  M  G  G  P  L :   G  S  F  L  E  D  L  S  Q  E  H  L  L  Q  Q  S  T  N  *  Y  *  G  D  A  N  G  D  K  *  C  N  I  Y  L  L  *  N  M  C  L  *  F  M  K  F  S  L  R  K  Q  C  L  I  C  V  C  F  D  C  I  N  Q  F  K  I  E  S  F  A  N   : K  R  R  K  E  </second_frame>
            <third_frame>   P  A  P  F  I  G  A  A  E  L  K  K  W  A  L  Y  R  A  L  I  A  E  F  V  A  T  L  L  L  L  Y  I  G  Q  L  T  I  M  G  Y  K  S  E  S  D  H  D  P  C  G  S  V  G  L  L  G  V  A  W  V  F  G  G  M  V  F  I  L  V  Y  C  T  A  G  I  S   : G  G  H  I  N  P  A  V  T  F  G  L  F  L  S  R  K  I  S  L  I  R  G  L  L  Y  I  V  V  Q  Y  L  G  A  I  C  G  T  A  L  V  K  A  I  Y  K  S  K  F  E  L  Y  G  G  G  V  N  S  V  S  P  G  Y  T  R  G  V  A  W  S  A  E  M  I  G  T  F  V  L  V  Y  T  V  L  S  A  T  D  S  K  R  N  A  R  D  S  H  V  P  :  V  L  A  P  L  P  I  G  F  A  V  F  L  V  H  L  A  T  I  P  I  T  G  T  G  I  N  P  A  R  S  L  G  A  A  V  I  Y  N  Q  Q  I  A  W  E  D  P   : W  D  L  F  W  R  T  F  H  R  S  T  Y  C  S  N  L  P  T  N  T  E  G  M  Q  M  E  I  S  D  A  T  Y  I  C  S  R  I  C  V  C  D  L  *  S  L  V  *  G  N  N  V  *  F  V  F  V  L  I  A  L  I  S  S  K  L  N  L  L  Q  T  :  K  E  G  K  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19104" stop="19332"/>
                    <exon start="19837" stop="20132"/>
                    <exon start="20334" stop="20475"/>
                    <exon start="20915" stop="21045"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAPFIGAAELKKWALYRALIAEFVATLLLLYIGQLTIMGYKSESDHDPCGSVGLLGVAWVFGGMVFILVYCTAGISGGHINPAVTFGLFLSRKISLIRGLLYIVVQYLGAICGTALVKAIYKSKFELYGGGVNSVSPGYTRGVAWSAEMIGTFVLVYTVLSATDSKRNARDSHVPVLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAVIYNQQIAWEDPWDLFWRTFHRSTYCSNLPTNTEGMQMEISDATYICSRICVCDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="22517" PGL_stop="22034"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22517" e_stop="22034"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="22517" e_stop="22034" e_length="484"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22517" stop="22034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22492" stop="22266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22453" stop="22034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238713" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATGAGCAATTAATCCATCGGAGAATCCATGACCTTGATGATCAATCGCACAAACGATAAATCCGTTTTTCGCGATGTGAACAGCTGTGAGTTGAACAAACCAGCTCGATTCTCCGGTGAATCCATGGACGACACAAACGACGCCGATGATTTTCGTCGGAGGAAGTGGGGACCACCATTGAGTGAAAAGCTTTAAGCCTCGTGAATTTGTAATGAATTCGGAGTTGTGAGTTACTGAGTGGTGAGAGTAGAACTCGGATTGACTCAGTGTGCCGAACGGACTCAACTCGTTCGCTTCTGCTACTGGATGCTTCATTTTTGTTTTCTCACGGCGGTGCTGCTATAATGCGCCGCGGGGGGATAGGATAGGATATAACCGAAATAGGGAACATGCAAACAACAAGATAACAAAGAGGATTGGGAAAAAATAGTGTGATTCGTCGTGTATTGAATTTATTTTTGTTGTTAAAAATAAAATAAAATA</gDNA_template>
            <first_frame> Y  E  Q  L  I  H  R  R  I  H  D  L  D  D  Q  S  H  K  R  *  I  R  F  S  R  C  E  Q  L  *  V  E  Q  T  S  S  I  L  R  *  I  H  G  R  H  K  R  R  R  *  F  S  S  E  E  V  G  T  T  I  E  *  K  A  L  S  L  V  N  L  *  *  I  R  S  C  E  L  L  S  G  E  S  R  T  R  I  D  S  V  C  R  T  D  S  T  R  S  L  L  L  L  D  A  S  F  L  F  S  H  G  G  A  A  I  M  R  R  G  G  I  G  *  D  I  T  E  I  G  N  M  Q  T  T  R  *  Q  R  G  L  G  K  N  S  V  I  R  R  V  L  N  L  F  L  L  L  K  I  K  *  N  </first_frame>
            <second_frame>  M  S  N  *  S  I  G  E  S  M  T  L  M  I  N  R  T  N  D  K  S  V  F  R  D  V  N  S  C  E  L  N  K  P  A  R  F  S  G  E  S  M  D  D  T  N  D  A  D  D  F  R  R  R  K  W  G  P  P  L  S  E  K  L  *  A  S  *  I  C  N  E  F  G  V  V  S  Y  *  V  V  R  V  E  L  G  L  T  Q  C  A  E  R  T  Q  L  V  R  F  C  Y  W  M  L  H  F  C  F  L  T  A  V  L  L  *  C  A  A  G  G  *  D  R  I  *  P  K  *  G  T  C  K  Q  Q  D  N  K  E  D  W  E  K  I  V  *  F  V  V  Y  *  I  Y  F  C  C  *  K  *  N  K  I </second_frame>
            <third_frame>   *  A  I  N  P  S  E  N  P  *  P  *  *  S  I  A  Q  T  I  N  P  F  F  A  M  *  T  A  V  S  *  T  N  Q  L  D  S  P  V  N  P  W  T  T  Q  T  T  P  M  I  F  V  G  G  S  G  D  H  H  *  V  K  S  F  K  P  R  E  F  V  M  N  S  E  L  *  V  T  E  W  *  E  *  N  S  D  *  L  S  V  P  N  G  L  N  S  F  A  S  A  T  G  C  F  I  F  V  F  S  R  R  C  C  Y  N  A  P  R  G  D  R  I  G  Y  N  R  N  R  E  H  A  N  N  K  I  T  K  R  I  G  K  K  *  C  D  S  S  C  I  E  F  I  F  V  V  K  N  K  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0141A12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="22131" PGL_stop="25595"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22131" e_stop="22840"/>
            <exon e_start="23337" e_stop="23900"/>
            <exon e_start="24815" e_stop="24829"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.569" e_score="0.964"/>
          <exon-intron don_prob="0.000" acc_prob="0.571" e_score="0.993"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="22131" e_stop="22840" e_length="710"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.569">
            <gDNA_intron_boundary i_start="22841" i_stop="23336" i_length="496"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="23337" e_stop="23900" e_length="564"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.571">
            <gDNA_intron_boundary i_start="23901" i_stop="24814" i_length="914"/>
          </intron>
          <exon e_serial="3" e_score="0.600">
            <gDNA_exon_boundary e_start="24815" e_stop="24829" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22131" stop="22827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22132" stop="22710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22137" stop="22794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22137" stop="22714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22137" stop="22666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22168" stop="22786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22168" stop="22777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22168" stop="22680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22168" stop="22573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22168" stop="22571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22169" stop="22378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22177" stop="22653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22182" stop="22650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22184" stop="22840"/>
              <exon start="23337" stop="23548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22184" stop="22771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22192" stop="22819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22192" stop="22727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22198" stop="22623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22227" stop="22720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22235" stop="22623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22266" stop="22783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22325" stop="22690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22349" stop="22840"/>
              <exon start="23337" stop="23539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22357" stop="22834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22364" stop="22840"/>
              <exon start="23337" stop="23358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22673" stop="22840"/>
              <exon start="23337" stop="23900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22719" stop="22840"/>
              <exon start="23337" stop="23900"/>
              <exon start="24815" stop="24828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22732" stop="22840"/>
              <exon start="23337" stop="23766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22733" stop="22840"/>
              <exon start="23337" stop="23823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22775" stop="22840"/>
              <exon start="23337" stop="23900"/>
              <exon start="24815" stop="24829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22806" stop="22840"/>
              <exon start="23337" stop="23900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22812" stop="22840"/>
              <exon start="23337" stop="23900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22812" stop="22840"/>
              <exon start="23337" stop="23777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22820" stop="22840"/>
              <exon start="23337" stop="23900"/>
              <exon start="24815" stop="24829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22821" stop="22840"/>
              <exon start="23337" stop="23900"/>
              <exon start="24815" stop="24829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23351" stop="23900"/>
              <exon start="24815" stop="24829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23746" stop="23900"/>
              <exon start="24815" stop="24828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23746" stop="23900"/>
              <exon start="24815" stop="24828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTATTTCGGTTATATCCTATCCTATCCCCCCGCGGCGCATTATAGCAGCACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTGATTCCGACTTGGCCCGTGGTCCCCACTCGCGGCTCGTTGCCTTTGGTTGCATTCAAG : GAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTAGGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTA : GACAGAGGAGAAAAA</gDNA_template>
            <first_frame> P  Y  F  G  Y  I  L  S  Y  P  P  A  A  H  Y  S  S  T  A  V  R  K  Q  K  *  S  I  Q  *  Q  K  R  T  S  *  V  R  S  A  H  *  V  N  P  S  S  T  L  T  T  Q  *  L  T  T  P  N  S  L  Q  I  H  E  A  *  S  F  S  L  N  G  G  P  H  F  L  R  R  K  S  S  A  S  F  V  S  S  M  D  S  P  E  N  R  A  G  L  F  N  S  Q  L  F  T  S  R  K  T  D  L  S  F  V  R  L  I  I  K  V  M  D  S  P  M  D  *  L  L  I  F  L  I  *  I  S  L  L  M  T  V  L  V  S  S  I  P  F  G  I  S  M  F  R  R  L  C  R  R  F  S  M  L  N  P  S  A  V  L  S  R  F  *  S  L  S  G  K  A  I  L  L  P  A  G  R  L  T  A  S  F  *  M  E  L  C  M  G  L  A  I  S  S  N  R  R  G  L  *  N  I  Y  L  V  S  L  P  F  *  F  R  L  G  P  W  S  P  L  A  A  R  C  L  W  L  H  S  R :   R  S  G  R  G  N  W  Q  *  Q  V  Q  G  D  H  L  *  N  H  A  P  R  R  R  V  S  *  *  E  Y  V  G  S  C  K  G  D  S  K  K  *  K  Y  H  F  *  S  S  T  A  A  M  M  S  S  A  I  P  R  A  R  R  S  Y  I  A  D  R  Q  A  R  T  K  H  *  R  Y  I  Q  V  C  G  T  S  W  L  E  N  W  R  R  M  W  S  K  C  S  E  M  S  L  S  G  L  K  *  E  P  T  F  Q  P  A  T  R  P  L  L  T  V  A  R  R  S  G  S  W  L  G  Y  S  S  W  E  V  V  N  N  M  P  V  K  V  S  *  R  S  V  N  I  V  I  S  K  L  K  N  Q  K  I  N  L  Y  Q  A  I  Y  V  K  T  L  L  A  M  *  L  F  K  L  V  L  M  Q  Y  L  L  I  * :   T  E  E  K   </first_frame>
            <second_frame>  P  I  S  V  I  S  Y  P  I  P  P  R  R  I  I  A  A  P  P  *  E  N  K  N  E  A  S  S  S  R  S  E  R  V  E  S  V  R  H  T  E  S  I  R  V  L  L  S  P  L  S  N  S  Q  L  R  I  H  Y  K  F  T  R  L  K  A  F  H  S  M  V  V  P  T  S  S  D  E  N  H  R  R  R  L  C  R  P  W  I  H  R  R  I  E  L  V  C  S  T  H  S  C  S  H  R  E  K  R  I  Y  R  L  C  D  *  S  S  R  S  W  I  L  R  W  I  N  C  S  Y  S  *  F  K  S  R  C  *  *  L  Y  *  F  L  R  F  L  S  G  S  P  C  S  A  V  S  A  V  V  S  L  C  *  I  P  R  R  C  Y  R  A  S  N  H  S  P  G  R  R  F  C  S  P  P  V  V  *  R  R  R  F  E  W  S  Y  V  W  D  *  Q  *  V  Q  T  A  V  A  S  R  T  S  T  W  Y  R  C  R  F  D  S  D  L  A  R  G  P  H  S  R  L  V  A  F  G  C  I  Q   : G  G  V  E  E  E  I  G  N  S  K  S  K  E  T  T  Y  K  T  T  P  R  D  G  A  *  V  N  E  S  M  *  G  A  A  R  E  I  R  R  S  E  S  T  I  S  D  R  P  R  Q  R  *  C  H  L  R  S  R  V  R  G  G  A  I  S  P  I  D  K  Q  G  Q  N  T  E  D  I  S  R  Y  V  A  P  A  G  W  R  T  G  G  E  C  G  A  S  V  R  R  C  R  *  V  A  *  N  E  S  R  R  F  N  R  R  Q  G  H  C  *  R  W  R  V  G  V  G  V  G  W  D  I  L  V  G  K  W  L  I  I  C  Q  *  K  *  V  K  D  Q  *  T  L  *  S  V  S  *  R  T  K  K  *  I  C  T  R  P  F  M  S  K  L  Y  *  P  C  D  Y  L  N  L  Y  *  C  N  I  C  *  F   : R  Q  R  R  K  </second_frame>
            <third_frame>   L  F  R  L  Y  P  I  L  S  P  R  G  A  L  *  Q  H  R  R  E  K  T  K  M  K  H  P  V  A  E  A  N  E  L  S  P  F  G  T  L  S  Q  S  E  F  Y  S  H  H  S  V  T  H  N  S  E  F  I  T  N  S  R  G  L  K  L  F  T  Q  W  W  S  P  L  P  P  T  K  I  I  G  V  V  C  V  V  H  G  F  T  G  E  S  S  W  F  V  Q  L  T  A  V  H  I  A  K  N  G  F  I  V  C  A  I  D  H  Q  G  H  G  F  S  D  G  L  I  A  H  I  P  D  L  N  L  V  V  D  D  C  I  S  F  F  D  S  F  R  D  L  H  V  P  P  S  L  P  S  F  L  Y  A  E  S  L  G  G  A  I  A  L  L  I  T  L  R  E  G  D  S  A  P  R  R  S  F  D  G  V  V  L  N  G  A  M  Y  G  I  S  N  K  F  K  P  P  W  P  L  E  H  L  L  G  I  A  A  V  L  I  P  T  W  P  V  V  P  T  R  G  S  L  P  L  V  A  F  K  :  E  E  W  K  R  K  L  A  I  A  S  P  R  R  P  L  I  K  P  R  P  A  T  A  R  E  L  M  R  V  C  R  E  L  Q  G  R  F  E  E  V  K  V  P  F  L  I  V  H  G  S  D  D  V  I  C  D  P  A  C  A  E  E  L  Y  R  R  S  T  S  K  D  K  T  L  K  I  Y  P  G  M  W  H  Q  L  V  G  E  L  E  E  N  V  E  Q  V  F  G  D  V  V  E  W  L  K  M  R  A  D  V  S  T  G  D  K  A  T  V  D  G  G  A  *  E  W  E  L  V  G  I  F  *  L  G  S  G  *  *  Y  A  S  K  S  K  L  K  I  S  K  H  C  D  Q  *  V  K  E  P  K  N  K  F  V  P  G  H  L  C  Q  N  F  I  S  H  V  T  I  *  T  C  I  N  A  I  F  V  D  L  :  D  R  G  E  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22178" stop="22840"/>
                    <exon start="23337" stop="23705"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1029</number_coding_nucleotides>
                  <number_encoded_amino_acids>343</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QHRREKTKMKHPVAEANELSPFGTLSQSEFYSHHSVTHNSEFITNSRGLKLFTQWWSPLPPTKIIGVVCVVHGFTGESSWFVQLTAVHIAKNGFIVCAIDHQGHGFSDGLIAHIPDLNLVVDDCISFFDSFRDLHVPPSLPSFLYAESLGGAIALLITLREGDSAPRRSFDGVVLNGAMYGISNKFKPPWPLEHLLGIAAVLIPTWPVVPTRGSLPLVAFKEEWKRKLAIASPRRPLIKPRPATARELMRVCRELQGRFEEVKVPFLIVHGSDDVICDPACAEELYRRSTSKDKTLKIYPGMWHQLVGELEENVEQVFGDVVEWLKMRADVSTGDKATVDGGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22131" e_stop="22840"/>
            <exon e_start="23337" e_stop="23994"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.569" e_score="0.964"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="22131" e_stop="22840" e_length="710"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.569">
            <gDNA_intron_boundary i_start="22841" i_stop="23336" i_length="496"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="23337" e_stop="23994" e_length="658"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22131" stop="22827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22132" stop="22710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22137" stop="22794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22137" stop="22714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22137" stop="22666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22168" stop="22786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22168" stop="22777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22168" stop="22680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22168" stop="22573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22168" stop="22571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22169" stop="22378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22177" stop="22653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22182" stop="22650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22184" stop="22840"/>
              <exon start="23337" stop="23548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22184" stop="22771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22192" stop="22819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22192" stop="22727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22198" stop="22623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22227" stop="22720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22235" stop="22623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22266" stop="22783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22325" stop="22690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22349" stop="22840"/>
              <exon start="23337" stop="23539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22357" stop="22834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22364" stop="22840"/>
              <exon start="23337" stop="23358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22673" stop="22840"/>
              <exon start="23337" stop="23900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22698" stop="22840"/>
              <exon start="23337" stop="23918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22732" stop="22840"/>
              <exon start="23337" stop="23766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22733" stop="22840"/>
              <exon start="23337" stop="23823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22806" stop="22840"/>
              <exon start="23337" stop="23900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22812" stop="22840"/>
              <exon start="23337" stop="23900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22812" stop="22840"/>
              <exon start="23337" stop="23777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23506" stop="23994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394307" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTATTTCGGTTATATCCTATCCTATCCCCCCGCGGCGCATTATAGCAGCACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTGATTCCGACTTGGCCCGTGGTCCCCACTCGCGGCTCGTTGCCTTTGGTTGCATTCAAG : GAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTAGGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTAGTTATGTTGATATTAATTTTTTACCAGATATGTATAAATTTCTAACAAAAAATTATTGATCTCAACTGAGACAATTTTATTATAAACTTTTGCA</gDNA_template>
            <first_frame> P  Y  F  G  Y  I  L  S  Y  P  P  A  A  H  Y  S  S  T  A  V  R  K  Q  K  *  S  I  Q  *  Q  K  R  T  S  *  V  R  S  A  H  *  V  N  P  S  S  T  L  T  T  Q  *  L  T  T  P  N  S  L  Q  I  H  E  A  *  S  F  S  L  N  G  G  P  H  F  L  R  R  K  S  S  A  S  F  V  S  S  M  D  S  P  E  N  R  A  G  L  F  N  S  Q  L  F  T  S  R  K  T  D  L  S  F  V  R  L  I  I  K  V  M  D  S  P  M  D  *  L  L  I  F  L  I  *  I  S  L  L  M  T  V  L  V  S  S  I  P  F  G  I  S  M  F  R  R  L  C  R  R  F  S  M  L  N  P  S  A  V  L  S  R  F  *  S  L  S  G  K  A  I  L  L  P  A  G  R  L  T  A  S  F  *  M  E  L  C  M  G  L  A  I  S  S  N  R  R  G  L  *  N  I  Y  L  V  S  L  P  F  *  F  R  L  G  P  W  S  P  L  A  A  R  C  L  W  L  H  S  R :   R  S  G  R  G  N  W  Q  *  Q  V  Q  G  D  H  L  *  N  H  A  P  R  R  R  V  S  *  *  E  Y  V  G  S  C  K  G  D  S  K  K  *  K  Y  H  F  *  S  S  T  A  A  M  M  S  S  A  I  P  R  A  R  R  S  Y  I  A  D  R  Q  A  R  T  K  H  *  R  Y  I  Q  V  C  G  T  S  W  L  E  N  W  R  R  M  W  S  K  C  S  E  M  S  L  S  G  L  K  *  E  P  T  F  Q  P  A  T  R  P  L  L  T  V  A  R  R  S  G  S  W  L  G  Y  S  S  W  E  V  V  N  N  M  P  V  K  V  S  *  R  S  V  N  I  V  I  S  K  L  K  N  Q  K  I  N  L  Y  Q  A  I  Y  V  K  T  L  L  A  M  *  L  F  K  L  V  L  M  Q  Y  L  L  I  *  L  C  *  Y  *  F  F  T  R  Y  V  *  I  S  N  K  K  L  L  I  S  T  E  T  I  L  L  *  T  F  A </first_frame>
            <second_frame>  P  I  S  V  I  S  Y  P  I  P  P  R  R  I  I  A  A  P  P  *  E  N  K  N  E  A  S  S  S  R  S  E  R  V  E  S  V  R  H  T  E  S  I  R  V  L  L  S  P  L  S  N  S  Q  L  R  I  H  Y  K  F  T  R  L  K  A  F  H  S  M  V  V  P  T  S  S  D  E  N  H  R  R  R  L  C  R  P  W  I  H  R  R  I  E  L  V  C  S  T  H  S  C  S  H  R  E  K  R  I  Y  R  L  C  D  *  S  S  R  S  W  I  L  R  W  I  N  C  S  Y  S  *  F  K  S  R  C  *  *  L  Y  *  F  L  R  F  L  S  G  S  P  C  S  A  V  S  A  V  V  S  L  C  *  I  P  R  R  C  Y  R  A  S  N  H  S  P  G  R  R  F  C  S  P  P  V  V  *  R  R  R  F  E  W  S  Y  V  W  D  *  Q  *  V  Q  T  A  V  A  S  R  T  S  T  W  Y  R  C  R  F  D  S  D  L  A  R  G  P  H  S  R  L  V  A  F  G  C  I  Q   : G  G  V  E  E  E  I  G  N  S  K  S  K  E  T  T  Y  K  T  T  P  R  D  G  A  *  V  N  E  S  M  *  G  A  A  R  E  I  R  R  S  E  S  T  I  S  D  R  P  R  Q  R  *  C  H  L  R  S  R  V  R  G  G  A  I  S  P  I  D  K  Q  G  Q  N  T  E  D  I  S  R  Y  V  A  P  A  G  W  R  T  G  G  E  C  G  A  S  V  R  R  C  R  *  V  A  *  N  E  S  R  R  F  N  R  R  Q  G  H  C  *  R  W  R  V  G  V  G  V  G  W  D  I  L  V  G  K  W  L  I  I  C  Q  *  K  *  V  K  D  Q  *  T  L  *  S  V  S  *  R  T  K  K  *  I  C  T  R  P  F  M  S  K  L  Y  *  P  C  D  Y  L  N  L  Y  *  C  N  I  C  *  F  S  Y  V  D  I  N  F  L  P  D  M  Y  K  F  L  T  K  N  Y  *  S  Q  L  R  Q  F  Y  Y  K  L  L   </second_frame>
            <third_frame>   L  F  R  L  Y  P  I  L  S  P  R  G  A  L  *  Q  H  R  R  E  K  T  K  M  K  H  P  V  A  E  A  N  E  L  S  P  F  G  T  L  S  Q  S  E  F  Y  S  H  H  S  V  T  H  N  S  E  F  I  T  N  S  R  G  L  K  L  F  T  Q  W  W  S  P  L  P  P  T  K  I  I  G  V  V  C  V  V  H  G  F  T  G  E  S  S  W  F  V  Q  L  T  A  V  H  I  A  K  N  G  F  I  V  C  A  I  D  H  Q  G  H  G  F  S  D  G  L  I  A  H  I  P  D  L  N  L  V  V  D  D  C  I  S  F  F  D  S  F  R  D  L  H  V  P  P  S  L  P  S  F  L  Y  A  E  S  L  G  G  A  I  A  L  L  I  T  L  R  E  G  D  S  A  P  R  R  S  F  D  G  V  V  L  N  G  A  M  Y  G  I  S  N  K  F  K  P  P  W  P  L  E  H  L  L  G  I  A  A  V  L  I  P  T  W  P  V  V  P  T  R  G  S  L  P  L  V  A  F  K  :  E  E  W  K  R  K  L  A  I  A  S  P  R  R  P  L  I  K  P  R  P  A  T  A  R  E  L  M  R  V  C  R  E  L  Q  G  R  F  E  E  V  K  V  P  F  L  I  V  H  G  S  D  D  V  I  C  D  P  A  C  A  E  E  L  Y  R  R  S  T  S  K  D  K  T  L  K  I  Y  P  G  M  W  H  Q  L  V  G  E  L  E  E  N  V  E  Q  V  F  G  D  V  V  E  W  L  K  M  R  A  D  V  S  T  G  D  K  A  T  V  D  G  G  A  *  E  W  E  L  V  G  I  F  *  L  G  S  G  *  *  Y  A  S  K  S  K  L  K  I  S  K  H  C  D  Q  *  V  K  E  P  K  N  K  F  V  P  G  H  L  C  Q  N  F  I  S  H  V  T  I  *  T  C  I  N  A  I  F  V  D  L  V  M  L  I  L  I  F  Y  Q  I  C  I  N  F  *  Q  K  I  I  D  L  N  *  D  N  F  I  I  N  F  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22178" stop="22840"/>
                    <exon start="23337" stop="23705"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1029</number_coding_nucleotides>
                  <number_encoded_amino_acids>343</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QHRREKTKMKHPVAEANELSPFGTLSQSEFYSHHSVTHNSEFITNSRGLKLFTQWWSPLPPTKIIGVVCVVHGFTGESSWFVQLTAVHIAKNGFIVCAIDHQGHGFSDGLIAHIPDLNLVVDDCISFFDSFRDLHVPPSLPSFLYAESLGGAIALLITLREGDSAPRRSFDGVVLNGAMYGISNKFKPPWPLEHLLGIAAVLIPTWPVVPTRGSLPLVAFKEEWKRKLAIASPRRPLIKPRPATARELMRVCRELQGRFEEVKVPFLIVHGSDDVICDPACAEELYRRSTSKDKTLKIYPGMWHQLVGELEENVEQVFGDVVEWLKMRADVSTGDKATVDGGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="22131" e_stop="22840"/>
            <exon e_start="23337" e_stop="23900"/>
            <exon e_start="25573" e_stop="25595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.569" e_score="0.964"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.783"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="22131" e_stop="22840" e_length="710"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.569">
            <gDNA_intron_boundary i_start="22841" i_stop="23336" i_length="496"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="23337" e_stop="23900" e_length="564"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23901" i_stop="25572" i_length="1672"/>
          </intron>
          <exon e_serial="3" e_score="0.783">
            <gDNA_exon_boundary e_start="25573" e_stop="25595" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22131" stop="22827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22132" stop="22710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22137" stop="22794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22137" stop="22714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22137" stop="22666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22168" stop="22786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22168" stop="22777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22168" stop="22680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22168" stop="22573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22168" stop="22571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22169" stop="22378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22177" stop="22653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22182" stop="22650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22184" stop="22840"/>
              <exon start="23337" stop="23548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22184" stop="22771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22192" stop="22819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22192" stop="22727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22198" stop="22623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22227" stop="22720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22235" stop="22623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22266" stop="22783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22325" stop="22690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22349" stop="22840"/>
              <exon start="23337" stop="23539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22357" stop="22834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22364" stop="22840"/>
              <exon start="23337" stop="23358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22673" stop="22840"/>
              <exon start="23337" stop="23900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22732" stop="22840"/>
              <exon start="23337" stop="23766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22733" stop="22840"/>
              <exon start="23337" stop="23823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22806" stop="22840"/>
              <exon start="23337" stop="23900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22812" stop="22840"/>
              <exon start="23337" stop="23900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22812" stop="22840"/>
              <exon start="23337" stop="23777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23356" stop="23900"/>
              <exon start="25573" stop="25595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246098" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTATTTCGGTTATATCCTATCCTATCCCCCCGCGGCGCATTATAGCAGCACCGCCGTGAGAAAACAAAAATGAAGCATCCAGTAGCAGAAGCGAACGAGTTGAGTCCGTTCGGCACACTGAGTCAATCCGAGTTCTACTCTCACCACTCAGTAACTCACAACTCCGAATTCATTACAAATTCACGAGGCTTAAAGCTTTTCACTCAATGGTGGTCCCCACTTCCTCCGACGAAAATCATCGGCGTCGTTTGTGTCGTCCATGGATTCACCGGAGAATCGAGCTGGTTTGTTCAACTCACAGCTGTTCACATCGCGAAAAACGGATTTATCGTTTGTGCGATTGATCATCAAGGTCATGGATTCTCCGATGGATTAATTGCTCATATTCCTGATTTAAATCTCGTTGTTGATGACTGTATTAGTTTCTTCGATTCCTTTCGGGATCTCCATGTTCCGCCGTCTCTGCCGTCGTTTCTCTATGCTGAATCCCTCGGCGGTGCTATCGCGCTTCTAATCACTCTCCGGGAAGGCGATTCTGCTCCCCGCCGGTCGTTTGACGGCGTCGTTTTGAATGGAGCTATGTATGGGATTAGCAATAAGTTCAAACCGCCGTGGCCTCTAGAACATCTACTTGGTATCGCTGCCGTTTTGATTCCGACTTGGCCCGTGGTCCCCACTCGCGGCTCGTTGCCTTTGGTTGCATTCAAG : GAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTAGGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTA : AAAAATTGAAGAAAAAAAAATAA</gDNA_template>
            <first_frame> P  Y  F  G  Y  I  L  S  Y  P  P  A  A  H  Y  S  S  T  A  V  R  K  Q  K  *  S  I  Q  *  Q  K  R  T  S  *  V  R  S  A  H  *  V  N  P  S  S  T  L  T  T  Q  *  L  T  T  P  N  S  L  Q  I  H  E  A  *  S  F  S  L  N  G  G  P  H  F  L  R  R  K  S  S  A  S  F  V  S  S  M  D  S  P  E  N  R  A  G  L  F  N  S  Q  L  F  T  S  R  K  T  D  L  S  F  V  R  L  I  I  K  V  M  D  S  P  M  D  *  L  L  I  F  L  I  *  I  S  L  L  M  T  V  L  V  S  S  I  P  F  G  I  S  M  F  R  R  L  C  R  R  F  S  M  L  N  P  S  A  V  L  S  R  F  *  S  L  S  G  K  A  I  L  L  P  A  G  R  L  T  A  S  F  *  M  E  L  C  M  G  L  A  I  S  S  N  R  R  G  L  *  N  I  Y  L  V  S  L  P  F  *  F  R  L  G  P  W  S  P  L  A  A  R  C  L  W  L  H  S  R :   R  S  G  R  G  N  W  Q  *  Q  V  Q  G  D  H  L  *  N  H  A  P  R  R  R  V  S  *  *  E  Y  V  G  S  C  K  G  D  S  K  K  *  K  Y  H  F  *  S  S  T  A  A  M  M  S  S  A  I  P  R  A  R  R  S  Y  I  A  D  R  Q  A  R  T  K  H  *  R  Y  I  Q  V  C  G  T  S  W  L  E  N  W  R  R  M  W  S  K  C  S  E  M  S  L  S  G  L  K  *  E  P  T  F  Q  P  A  T  R  P  L  L  T  V  A  R  R  S  G  S  W  L  G  Y  S  S  W  E  V  V  N  N  M  P  V  K  V  S  *  R  S  V  N  I  V  I  S  K  L  K  N  Q  K  I  N  L  Y  Q  A  I  Y  V  K  T  L  L  A  M  *  L  F  K  L  V  L  M  Q  Y  L  L  I  * :   K  I  E  E  K  K  I  </first_frame>
            <second_frame>  P  I  S  V  I  S  Y  P  I  P  P  R  R  I  I  A  A  P  P  *  E  N  K  N  E  A  S  S  S  R  S  E  R  V  E  S  V  R  H  T  E  S  I  R  V  L  L  S  P  L  S  N  S  Q  L  R  I  H  Y  K  F  T  R  L  K  A  F  H  S  M  V  V  P  T  S  S  D  E  N  H  R  R  R  L  C  R  P  W  I  H  R  R  I  E  L  V  C  S  T  H  S  C  S  H  R  E  K  R  I  Y  R  L  C  D  *  S  S  R  S  W  I  L  R  W  I  N  C  S  Y  S  *  F  K  S  R  C  *  *  L  Y  *  F  L  R  F  L  S  G  S  P  C  S  A  V  S  A  V  V  S  L  C  *  I  P  R  R  C  Y  R  A  S  N  H  S  P  G  R  R  F  C  S  P  P  V  V  *  R  R  R  F  E  W  S  Y  V  W  D  *  Q  *  V  Q  T  A  V  A  S  R  T  S  T  W  Y  R  C  R  F  D  S  D  L  A  R  G  P  H  S  R  L  V  A  F  G  C  I  Q   : G  G  V  E  E  E  I  G  N  S  K  S  K  E  T  T  Y  K  T  T  P  R  D  G  A  *  V  N  E  S  M  *  G  A  A  R  E  I  R  R  S  E  S  T  I  S  D  R  P  R  Q  R  *  C  H  L  R  S  R  V  R  G  G  A  I  S  P  I  D  K  Q  G  Q  N  T  E  D  I  S  R  Y  V  A  P  A  G  W  R  T  G  G  E  C  G  A  S  V  R  R  C  R  *  V  A  *  N  E  S  R  R  F  N  R  R  Q  G  H  C  *  R  W  R  V  G  V  G  V  G  W  D  I  L  V  G  K  W  L  I  I  C  Q  *  K  *  V  K  D  Q  *  T  L  *  S  V  S  *  R  T  K  K  *  I  C  T  R  P  F  M  S  K  L  Y  *  P  C  D  Y  L  N  L  Y  *  C  N  I  C  *  F   : K  K  L  K  K  K  K  * </second_frame>
            <third_frame>   L  F  R  L  Y  P  I  L  S  P  R  G  A  L  *  Q  H  R  R  E  K  T  K  M  K  H  P  V  A  E  A  N  E  L  S  P  F  G  T  L  S  Q  S  E  F  Y  S  H  H  S  V  T  H  N  S  E  F  I  T  N  S  R  G  L  K  L  F  T  Q  W  W  S  P  L  P  P  T  K  I  I  G  V  V  C  V  V  H  G  F  T  G  E  S  S  W  F  V  Q  L  T  A  V  H  I  A  K  N  G  F  I  V  C  A  I  D  H  Q  G  H  G  F  S  D  G  L  I  A  H  I  P  D  L  N  L  V  V  D  D  C  I  S  F  F  D  S  F  R  D  L  H  V  P  P  S  L  P  S  F  L  Y  A  E  S  L  G  G  A  I  A  L  L  I  T  L  R  E  G  D  S  A  P  R  R  S  F  D  G  V  V  L  N  G  A  M  Y  G  I  S  N  K  F  K  P  P  W  P  L  E  H  L  L  G  I  A  A  V  L  I  P  T  W  P  V  V  P  T  R  G  S  L  P  L  V  A  F  K  :  E  E  W  K  R  K  L  A  I  A  S  P  R  R  P  L  I  K  P  R  P  A  T  A  R  E  L  M  R  V  C  R  E  L  Q  G  R  F  E  E  V  K  V  P  F  L  I  V  H  G  S  D  D  V  I  C  D  P  A  C  A  E  E  L  Y  R  R  S  T  S  K  D  K  T  L  K  I  Y  P  G  M  W  H  Q  L  V  G  E  L  E  E  N  V  E  Q  V  F  G  D  V  V  E  W  L  K  M  R  A  D  V  S  T  G  D  K  A  T  V  D  G  G  A  *  E  W  E  L  V  G  I  F  *  L  G  S  G  *  *  Y  A  S  K  S  K  L  K  I  S  K  H  C  D  Q  *  V  K  E  P  K  N  K  F  V  P  G  H  L  C  Q  N  F  I  S  H  V  T  I  *  T  C  I  N  A  I  F  V  D  L  :  K  N  *  R  K  K  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22178" stop="22840"/>
                    <exon start="23337" stop="23705"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1029</number_coding_nucleotides>
                  <number_encoded_amino_acids>343</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QHRREKTKMKHPVAEANELSPFGTLSQSEFYSHHSVTHNSEFITNSRGLKLFTQWWSPLPPTKIIGVVCVVHGFTGESSWFVQLTAVHIAKNGFIVCAIDHQGHGFSDGLIAHIPDLNLVVDDCISFFDSFRDLHVPPSLPSFLYAESLGGAIALLITLREGDSAPRRSFDGVVLNGAMYGISNKFKPPWPLEHLLGIAAVLIPTWPVVPTRGSLPLVAFKEEWKRKLAIASPRRPLIKPRPATARELMRVCRELQGRFEEVKVPFLIVHGSDDVICDPACAEELYRRSTSKDKTLKIYPGMWHQLVGELEENVEQVFGDVVEWLKMRADVSTGDKATVDGGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="23315" e_stop="23900"/>
            <exon e_start="24815" e_stop="24829"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.571" e_score="0.984"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="23315" e_stop="23900" e_length="586"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.571">
            <gDNA_intron_boundary i_start="23901" i_stop="24814" i_length="914"/>
          </intron>
          <exon e_serial="2" e_score="0.600">
            <gDNA_exon_boundary e_start="24815" e_stop="24829" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23315" stop="23823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23351" stop="23900"/>
              <exon start="24815" stop="24829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23746" stop="23900"/>
              <exon start="24815" stop="24828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23746" stop="23900"/>
              <exon start="24815" stop="24828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTGGTAATTCACGAAGGAGGAGTGGAAGAGGAAATTGGCAATAGCAAGTCCAAGGAGACCACTTATAAAACCACGCCCCGCGACGGCGCGTGAGTTAATGAGAGTATGTAGGGAGCTGCAAGGGAGATTCGAAGAAGTGAAAGTACCATTTCTGATCGTCCACGGCAGCGATGATGTCATCTGCGATCCCGCGTGCGCGGAGGAGCTATATCGCCGATCGACAAGCAAGGACAAAACACTGAAGATATATCCAGGTATGTGGCACCAGCTGGTTGGAGAACTGGAGGAGAATGTGGAGCAAGTGTTCGGAGATGTCGTTGAGTGGCTTAAAATGAGAGCCGACGTTTCAACCGGCGACAAGGCCACTGTTGACGGTGGCGCGTAGGAGTGGGAGTTGGTTGGGATATTCTAGTTGGGAAGTGGTTAATAATATGCCAGTAAAAGTAAGTTAAAGATCAGTAAACATTGTGATCAGTAAGTTAAAGAACCAAAAAATAAATTTGTACCAGGCCATTTATGTCAAAACTTTATTAGCCATGTGACTATTTAAACTTGTATTAATGCAATATTTGTTGATTTA : GACAGAGGAGAAAAA</gDNA_template>
            <first_frame> F  F  L  V  I  H  E  G  G  V  E  E  E  I  G  N  S  K  S  K  E  T  T  Y  K  T  T  P  R  D  G  A  *  V  N  E  S  M  *  G  A  A  R  E  I  R  R  S  E  S  T  I  S  D  R  P  R  Q  R  *  C  H  L  R  S  R  V  R  G  G  A  I  S  P  I  D  K  Q  G  Q  N  T  E  D  I  S  R  Y  V  A  P  A  G  W  R  T  G  G  E  C  G  A  S  V  R  R  C  R  *  V  A  *  N  E  S  R  R  F  N  R  R  Q  G  H  C  *  R  W  R  V  G  V  G  V  G  W  D  I  L  V  G  K  W  L  I  I  C  Q  *  K  *  V  K  D  Q  *  T  L  *  S  V  S  *  R  T  K  K  *  I  C  T  R  P  F  M  S  K  L  Y  *  P  C  D  Y  L  N  L  Y  *  C  N  I  C  *  F   : R  Q  R  R  K  </first_frame>
            <second_frame>  F  F  W  *  F  T  K  E  E  W  K  R  K  L  A  I  A  S  P  R  R  P  L  I  K  P  R  P  A  T  A  R  E  L  M  R  V  C  R  E  L  Q  G  R  F  E  E  V  K  V  P  F  L  I  V  H  G  S  D  D  V  I  C  D  P  A  C  A  E  E  L  Y  R  R  S  T  S  K  D  K  T  L  K  I  Y  P  G  M  W  H  Q  L  V  G  E  L  E  E  N  V  E  Q  V  F  G  D  V  V  E  W  L  K  M  R  A  D  V  S  T  G  D  K  A  T  V  D  G  G  A  *  E  W  E  L  V  G  I  F  *  L  G  S  G  *  *  Y  A  S  K  S  K  L  K  I  S  K  H  C  D  Q  *  V  K  E  P  K  N  K  F  V  P  G  H  L  C  Q  N  F  I  S  H  V  T  I  *  T  C  I  N  A  I  F  V  D  L  :  D  R  G  E  K </second_frame>
            <third_frame>   F  F  G  N  S  R  R  R  S  G  R  G  N  W  Q  *  Q  V  Q  G  D  H  L  *  N  H  A  P  R  R  R  V  S  *  *  E  Y  V  G  S  C  K  G  D  S  K  K  *  K  Y  H  F  *  S  S  T  A  A  M  M  S  S  A  I  P  R  A  R  R  S  Y  I  A  D  R  Q  A  R  T  K  H  *  R  Y  I  Q  V  C  G  T  S  W  L  E  N  W  R  R  M  W  S  K  C  S  E  M  S  L  S  G  L  K  *  E  P  T  F  Q  P  A  T  R  P  L  L  T  V  A  R  R  S  G  S  W  L  G  Y  S  S  W  E  V  V  N  N  M  P  V  K  V  S  *  R  S  V  N  I  V  I  S  K  L  K  N  Q  K  I  N  L  Y  Q  A  I  Y  V  K  T  L  L  A  M  *  L  F  K  L  V  L  M  Q  Y  L  L  I  * :   T  E  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23328" stop="23705"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTKEEWKRKLAIASPRRPLIKPRPATARELMRVCRELQGRFEEVKVPFLIVHGSDDVICDPACAEELYRRSTSKDKTLKIYPGMWHQLVGELEENVEQVFGDVVEWLKMRADVSTGDKATVDGGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="26277" PGL_stop="23536"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26277" e_stop="26101"/>
            <exon e_start="26014" e_stop="24623"/>
            <exon e_start="23900" e_stop="23536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.781" e_score="0.994"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="26277" e_stop="26101" e_length="177"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.781">
            <gDNA_intron_boundary i_start="26100" i_stop="26015" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26014" e_stop="24623" e_length="1392"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24622" i_stop="23901" i_length="722"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="23900" e_stop="23536" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26277" stop="26101"/>
              <exon start="26014" stop="25430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25635" stop="25114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25379" stop="24681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332059" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25337" stop="24681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332180" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25330" stop="24631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25238" stop="24690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25163" stop="24690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25150" stop="24690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24647" stop="24623"/>
              <exon start="23900" stop="23536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220363" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24647" stop="24623"/>
              <exon start="23900" stop="23611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220712" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTGCAGTGCTGGAGTTACTACCACCTCAATGTTGGTCGGCCAAAGCTTAATCATGATCCAATCCATGAGTGTTTCCCATTTGTGCTTAGGTGGAAAGGTAAACAAAGCAGTCCAACGTCAAACCGTGATGTGGCATTCTACCGAAAATCATTGGACTCTATGAAGCCATCTGAT : GTTGACTGGTGTCCTTACTCAAACATTAGTCATACCGTCATACCAGAACATATATTGCGCAGCCTCATTCTGGGGAGATCAAAGACCATGTTGATATGTTATGACAAGGCAGAAAGACACCTTCCAGATCGTTGCCTACGGCAATTTGGCATGCATCAGACTGTTCCCGAAGAGGTACAGAAATGGGAGAGGAAGAGTCGAGGAGTTGATGGTGGTGTAGATCTCTCAACAAAAATGGAATCAGAGCTTAATGAATGGTCAAATCGACATCTCTACATTGTGGAGGCAGAGGAAGATGTTGAGGAAAGTGAATACATGCAGTGGTATATGAGAATTACAAGGAAGTTGGTTGGGAGGCCTGTACCTATCTCATCTGAGTTTCAACGGATGGTAAATTATCAGATATATGTAACTCAGGATTATTTTTTTTTCTTCAATTTTTCAGTTATCCAACATCTGCTCTCTCACTTTGAGTCATGCCTTTGATTTTTCACTATAGTCTGTTTATTTGTCACTGCAGAATGCTGCACTGAGAGAGATTGCCCATATAGCAGAAACCATTTCAACTCATGGGTTGGATGATCAACAGTTACAATCTGTCACAAGAATCCGATATATTACTTATGAATGCCTGAGGGATCAGATTGCAAGTACAGTATTTGTTGCATCAAACTCACAAAGTGAAGCTGGAAAGAAAGTACGTGGAAAGGAGAGAGTAAGAAGGAAGGGGATGGGCAAACGTAAGCGTAAAGAAGAGGTAGACCAATATTATGCAGCAGGGATACCCATGCAACATCGGATACCTGCTACAGCTTTTGATGTTGATCCTTCTCACCTATATCACATCGGCAATGAGATGGACAATCCTCATTTGTGCATTACAGTAAGTGAAGATGATCATGGTCGGATATCTCACGTAGCTCAAAGTGTCGATGATATTGATTTCTGTGAAGATGCTAAGGAAGTTGATGAATCACACTTCCATCATCTAGTTGGAGAACAAGATGACCATCTCTCCAGTGAAGTAGCAGAAGATAAACCTCATGCTTCATTGGATATCGTGGTTCCTCAGGTCTCCCATGAAACTAGAGAGGATGTTGCACAGCAGAACGATTATGGGGTTCTTGTTTAGACCAGTAAAGATGAAATTTATGGCTTGCACAATTTTCAGTTCATTTGGAGATGTTTTTCTCCTCTGTCCTAATTGAGGAGAAAGAAAATTATGCAACAATACTTTGAGCCCCGTTTGAATTGACTTAAAAAGTGTAACTTTTAAAAAGTTAACTTTTTAAAGTGTTTGAAATTTATTTTGCAGTTGAAAAAAAATTGTTGATATGTTTGGCAAATAAATAAGGGCTGGTAAAGACTTTTTTTTTAATCAAAATATGTGAA : TAAATCAACAAATATTGCATTAATACAAGTTTAAATAGTCACATGGCTAATAAAGTTTTGACATAAATGGCCTGGTACAAATTTATTTTTTGGTTCTTTAACTTACTGATCACAATGTTTACTGATCTTTAACTTACTTTTACTGGCATATTATTAACCACTTCCCAACTAGAATATCCCAACCAACTCCCACTCCTACGCGCCACCGTCAACAGTGGCCTTGTCGCCGGTTGAAACGTCGGCTCTCATTTTAAGCCACTCAACGACATCTCCGAACACTTGCTCCACATTCTCCTCCAGTTCTCCAACCAGCTGGTGCCACATACCTGGATATATCTTCAGTGTTTTGTCCTTGCTTGTCGATC</gDNA_template>
            <first_frame> L  L  Q  C  W  S  Y  Y  H  L  N  V  G  R  P  K  L  N  H  D  P  I  H  E  C  F  P  F  V  L  R  W  K  G  K  Q  S  S  P  T  S  N  R  D  V  A  F  Y  R  K  S  L  D  S  M  K  P  S  D  :  V  D  W  C  P  Y  S  N  I  S  H  T  V  I  P  E  H  I  L  R  S  L  I  L  G  R  S  K  T  M  L  I  C  Y  D  K  A  E  R  H  L  P  D  R  C  L  R  Q  F  G  M  H  Q  T  V  P  E  E  V  Q  K  W  E  R  K  S  R  G  V  D  G  G  V  D  L  S  T  K  M  E  S  E  L  N  E  W  S  N  R  H  L  Y  I  V  E  A  E  E  D  V  E  E  S  E  Y  M  Q  W  Y  M  R  I  T  R  K  L  V  G  R  P  V  P  I  S  S  E  F  Q  R  M  V  N  Y  Q  I  Y  V  T  Q  D  Y  F  F  F  F  N  F  S  V  I  Q  H  L  L  S  H  F  E  S  C  L  *  F  F  T  I  V  C  L  F  V  T  A  E  C  C  T  E  R  D  C  P  Y  S  R  N  H  F  N  S  W  V  G  *  S  T  V  T  I  C  H  K  N  P  I  Y  Y  L  *  M  P  E  G  S  D  C  K  Y  S  I  C  C  I  K  L  T  K  *  S  W  K  E  S  T  W  K  G  E  S  K  K  E  G  D  G  Q  T  *  A  *  R  R  G  R  P  I  L  C  S  R  D  T  H  A  T  S  D  T  C  Y  S  F  *  C  *  S  F  S  P  I  S  H  R  Q  *  D  G  Q  S  S  F  V  H  Y  S  K  *  R  *  S  W  S  D  I  S  R  S  S  K  C  R  *  Y  *  F  L  *  R  C  *  G  S  *  *  I  T  L  P  S  S  S  W  R  T  R  *  P  S  L  Q  *  S  S  R  R  *  T  S  C  F  I  G  Y  R  G  S  S  G  L  P  *  N  *  R  G  C  C  T  A  E  R  L  W  G  S  C  L  D  Q  *  R  *  N  L  W  L  A  Q  F  S  V  H  L  E  M  F  F  S  S  V  L  I  E  E  K  E  N  Y  A  T  I  L  *  A  P  F  E  L  T  *  K  V  *  L  L  K  S  *  L  F  K  V  F  E  I  Y  F  A  V  E  K  K  L  L  I  C  L  A  N  K  *  G  L  V  K  T  F  F  L  I  K  I  C  E  :  *  I  N  K  Y  C  I  N  T  S  L  N  S  H  M  A  N  K  V  L  T  *  M  A  W  Y  K  F  I  F  W  F  F  N  L  L  I  T  M  F  T  D  L  *  L  T  F  T  G  I  L  L  T  T  S  Q  L  E  Y  P  N  Q  L  P  L  L  R  A  T  V  N  S  G  L  V  A  G  *  N  V  G  S  H  F  K  P  L  N  D  I  S  E  H  L  L  H  I  L  L  Q  F  S  N  Q  L  V  P  H  T  W  I  Y  L  Q  C  F  V  L  A  C  R   </first_frame>
            <second_frame>  S  C  S  A  G  V  T  T  T  S  M  L  V  G  Q  S  L  I  M  I  Q  S  M  S  V  S  H  L  C  L  G  G  K  V  N  K  A  V  Q  R  Q  T  V  M  W  H  S  T  E  N  H  W  T  L  *  S  H  L  M :   L  T  G  V  L  T  Q  T  L  V  I  P  S  Y  Q  N  I  Y  C  A  A  S  F  W  G  D  Q  R  P  C  *  Y  V  M  T  R  Q  K  D  T  F  Q  I  V  A  Y  G  N  L  A  C  I  R  L  F  P  K  R  Y  R  N  G  R  G  R  V  E  E  L  M  V  V  *  I  S  Q  Q  K  W  N  Q  S  L  M  N  G  Q  I  D  I  S  T  L  W  R  Q  R  K  M  L  R  K  V  N  T  C  S  G  I  *  E  L  Q  G  S  W  L  G  G  L  Y  L  S  H  L  S  F  N  G  W  *  I  I  R  Y  M  *  L  R  I  I  F  F  S  S  I  F  Q  L  S  N  I  C  S  L  T  L  S  H  A  F  D  F  S  L  *  S  V  Y  L  S  L  Q  N  A  A  L  R  E  I  A  H  I  A  E  T  I  S  T  H  G  L  D  D  Q  Q  L  Q  S  V  T  R  I  R  Y  I  T  Y  E  C  L  R  D  Q  I  A  S  T  V  F  V  A  S  N  S  Q  S  E  A  G  K  K  V  R  G  K  E  R  V  R  R  K  G  M  G  K  R  K  R  K  E  E  V  D  Q  Y  Y  A  A  G  I  P  M  Q  H  R  I  P  A  T  A  F  D  V  D  P  S  H  L  Y  H  I  G  N  E  M  D  N  P  H  L  C  I  T  V  S  E  D  D  H  G  R  I  S  H  V  A  Q  S  V  D  D  I  D  F  C  E  D  A  K  E  V  D  E  S  H  F  H  H  L  V  G  E  Q  D  D  H  L  S  S  E  V  A  E  D  K  P  H  A  S  L  D  I  V  V  P  Q  V  S  H  E  T  R  E  D  V  A  Q  Q  N  D  Y  G  V  L  V  *  T  S  K  D  E  I  Y  G  L  H  N  F  Q  F  I  W  R  C  F  S  P  L  S  *  L  R  R  K  K  I  M  Q  Q  Y  F  E  P  R  L  N  *  L  K  K  C  N  F  *  K  V  N  F  L  K  C  L  K  F  I  L  Q  L  K  K  N  C  *  Y  V  W  Q  I  N  K  G  W  *  R  L  F  F  *  S  K  Y  V  N :   K  S  T  N  I  A  L  I  Q  V  *  I  V  T  W  L  I  K  F  *  H  K  W  P  G  T  N  L  F  F  G  S  L  T  Y  *  S  Q  C  L  L  I  F  N  L  L  L  L  A  Y  Y  *  P  L  P  N  *  N  I  P  T  N  S  H  S  Y  A  P  P  S  T  V  A  L  S  P  V  E  T  S  A  L  I  L  S  H  S  T  T  S  P  N  T  C  S  T  F  S  S  S  S  P  T  S  W  C  H  I  P  G  Y  I  F  S  V  L  S  L  L  V  D  </second_frame>
            <third_frame>   L  A  V  L  E  L  L  P  P  Q  C  W  S  A  K  A  *  S  *  S  N  P  *  V  F  P  I  C  A  *  V  E  R  *  T  K  Q  S  N  V  K  P  *  C  G  I  L  P  K  I  I  G  L  Y  E  A  I  *   : C  *  L  V  S  L  L  K  H  *  S  Y  R  H  T  R  T  Y  I  A  Q  P  H  S  G  E  I  K  D  H  V  D  M  L  *  Q  G  R  K  T  P  S  R  S  L  P  T  A  I  W  H  A  S  D  C  S  R  R  G  T  E  M  G  E  E  E  S  R  S  *  W  W  C  R  S  L  N  K  N  G  I  R  A  *  *  M  V  K  S  T  S  L  H  C  G  G  R  G  R  C  *  G  K  *  I  H  A  V  V  Y  E  N  Y  K  E  V  G  W  E  A  C  T  Y  L  I  *  V  S  T  D  G  K  L  S  D  I  C  N  S  G  L  F  F  F  L  Q  F  F  S  Y  P  T  S  A  L  S  L  *  V  M  P  L  I  F  H  Y  S  L  F  I  C  H  C  R  M  L  H  *  E  R  L  P  I  *  Q  K  P  F  Q  L  M  G  W  M  I  N  S  Y  N  L  S  Q  E  S  D  I  L  L  M  N  A  *  G  I  R  L  Q  V  Q  Y  L  L  H  Q  T  H  K  V  K  L  E  R  K  Y  V  E  R  R  E  *  E  G  R  G  W  A  N  V  S  V  K  K  R  *  T  N  I  M  Q  Q  G  Y  P  C  N  I  G  Y  L  L  Q  L  L  M  L  I  L  L  T  Y  I  T  S  A  M  R  W  T  I  L  I  C  A  L  Q  *  V  K  M  I  M  V  G  Y  L  T  *  L  K  V  S  M  I  L  I  S  V  K  M  L  R  K  L  M  N  H  T  S  I  I  *  L  E  N  K  M  T  I  S  P  V  K  *  Q  K  I  N  L  M  L  H  W  I  S  W  F  L  R  S  P  M  K  L  E  R  M  L  H  S  R  T  I  M  G  F  L  F  R  P  V  K  M  K  F  M  A  C  T  I  F  S  S  F  G  D  V  F  L  L  C  P  N  *  G  E  R  K  L  C  N  N  T  L  S  P  V  *  I  D  L  K  S  V  T  F  K  K  L  T  F  *  S  V  *  N  L  F  C  S  *  K  K  I  V  D  M  F  G  K  *  I  R  A  G  K  D  F  F  F  N  Q  N  M  *   : I  N  Q  Q  I  L  H  *  Y  K  F  K  *  S  H  G  *  *  S  F  D  I  N  G  L  V  Q  I  Y  F  L  V  L  *  L  T  D  H  N  V  Y  *  S  L  T  Y  F  Y  W  H  I  I  N  H  F  P  T  R  I  S  Q  P  T  P  T  P  T  R  H  R  Q  Q  W  P  C  R  R  L  K  R  R  L  S  F  *  A  T  Q  R  H  L  R  T  L  A  P  H  S  P  P  V  L  Q  P  A  G  A  T  Y  L  D  I  S  S  V  F  C  P  C  L  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26277" stop="26101"/>
                    <exon start="26014" stop="25529"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLQCWSYYHLNVGRPKLNHDPIHECFPFVLRWKGKQSSPTSNRDVAFYRKSLDSMKPSDVDWCPYSNISHTVIPEHILRSLILGRSKTMLICYDKAERHLPDRCLRQFGMHQTVPEEVQKWERKSRGVDGGVDLSTKMESELNEWSNRHLYIVEAEEDVEESEYMQWYMRITRKLVGRPVPISSEFQRMVNYQIYVTQDYFFFFNFSVIQHLLSHFESCL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25515" stop="24883"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVYLSLQNAALREIAHIAETISTHGLDDQQLQSVTRIRYITYECLRDQIASTVFVASNSQSEAGKKVRGKERVRRKGMGKRKRKEEVDQYYAAGIPMQHRIPATAFDVDPSHLYHIGNEMDNPHLCITVSEDDHGRISHVAQSVDDIDFCEDAKEVDESHFHHLVGEQDDHLSSEVAEDKPHASLDIVVPQVSHETREDVAQQNDYGVLV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23728" stop="23537"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIPTNSHSYAPPSTVALSPVETSALILSHSTTSPNTCSTFSSSSPTSWCHIPGYIFSVLSLLVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25722" e_stop="25625"/>
            <exon e_start="25494" e_stop="24623"/>
            <exon e_start="23900" e_stop="23536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="0.980"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="25722" e_stop="25625" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25624" i_stop="25495" i_length="130"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25494" e_stop="24623" e_length="872"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24622" i_stop="23901" i_length="722"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="23900" e_stop="23536" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25722" stop="25625"/>
              <exon start="25494" stop="24909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25722" stop="25625"/>
              <exon start="25494" stop="24968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25379" stop="24681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332059" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25337" stop="24681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332180" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25330" stop="24631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25238" stop="24690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25163" stop="24690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25150" stop="24690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24647" stop="24623"/>
              <exon start="23900" stop="23536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220363" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24647" stop="24623"/>
              <exon start="23900" stop="23611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220712" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGATGTTGAGGAAAGTGAATACATGCAGTGGTATATGAGAATTACAAGGAAGTTGGTTGGGAGGCCTGTACCTATCTCATCTGAGTTTCAACGGATG : AATGCTGCACTGAGAGAGATTGCCCATATAGCAGAAACCATTTCAACTCATGGGTTGGATGATCAACAGTTACAATCTGTCACAAGAATCCGATATATTACTTATGAATGCCTGAGGGATCAGATTGCAAGTACAGTATTTGTTGCATCAAACTCACAAAGTGAAGCTGGAAAGAAAGTACGTGGAAAGGAGAGAGTAAGAAGGAAGGGGATGGGCAAACGTAAGCGTAAAGAAGAGGTAGACCAATATTATGCAGCAGGGATACCCATGCAACATCGGATACCTGCTACAGCTTTTGATGTTGATCCTTCTCACCTATATCACATCGGCAATGAGATGGACAATCCTCATTTGTGCATTACAGTAAGTGAAGATGATCATGGTCGGATATCTCACGTAGCTCAAAGTGTCGATGATATTGATTTCTGTGAAGATGCTAAGGAAGTTGATGAATCACACTTCCATCATCTAGTTGGAGAACAAGATGACCATCTCTCCAGTGAAGTAGCAGAAGATAAACCTCATGCTTCATTGGATATCGTGGTTCCTCAGGTCTCCCATGAAACTAGAGAGGATGTTGCACAGCAGAACGATTATGGGGTTCTTGTTTAGACCAGTAAAGATGAAATTTATGGCTTGCACAATTTTCAGTTCATTTGGAGATGTTTTTCTCCTCTGTCCTAATTGAGGAGAAAGAAAATTATGCAACAATACTTTGAGCCCCGTTTGAATTGACTTAAAAAGTGTAACTTTTAAAAAGTTAACTTTTTAAAGTGTTTGAAATTTATTTTGCAGTTGAAAAAAAATTGTTGATATGTTTGGCAAATAAATAAGGGCTGGTAAAGACTTTTTTTTTAATCAAAATATGTGAA : TAAATCAACAAATATTGCATTAATACAAGTTTAAATAGTCACATGGCTAATAAAGTTTTGACATAAATGGCCTGGTACAAATTTATTTTTTGGTTCTTTAACTTACTGATCACAATGTTTACTGATCTTTAACTTACTTTTACTGGCATATTATTAACCACTTCCCAACTAGAATATCCCAACCAACTCCCACTCCTACGCGCCACCGTCAACAGTGGCCTTGTCGCCGGTTGAAACGTCGGCTCTCATTTTAAGCCACTCAACGACATCTCCGAACACTTGCTCCACATTCTCCTCCAGTTCTCCAACCAGCTGGTGCCACATACCTGGATATATCTTCAGTGTTTTGTCCTTGCTTGTCGATC</gDNA_template>
            <first_frame> K  M  L  R  K  V  N  T  C  S  G  I  *  E  L  Q  G  S  W  L  G  G  L  Y  L  S  H  L  S  F  N  G  * :   M  L  H  *  E  R  L  P  I  *  Q  K  P  F  Q  L  M  G  W  M  I  N  S  Y  N  L  S  Q  E  S  D  I  L  L  M  N  A  *  G  I  R  L  Q  V  Q  Y  L  L  H  Q  T  H  K  V  K  L  E  R  K  Y  V  E  R  R  E  *  E  G  R  G  W  A  N  V  S  V  K  K  R  *  T  N  I  M  Q  Q  G  Y  P  C  N  I  G  Y  L  L  Q  L  L  M  L  I  L  L  T  Y  I  T  S  A  M  R  W  T  I  L  I  C  A  L  Q  *  V  K  M  I  M  V  G  Y  L  T  *  L  K  V  S  M  I  L  I  S  V  K  M  L  R  K  L  M  N  H  T  S  I  I  *  L  E  N  K  M  T  I  S  P  V  K  *  Q  K  I  N  L  M  L  H  W  I  S  W  F  L  R  S  P  M  K  L  E  R  M  L  H  S  R  T  I  M  G  F  L  F  R  P  V  K  M  K  F  M  A  C  T  I  F  S  S  F  G  D  V  F  L  L  C  P  N  *  G  E  R  K  L  C  N  N  T  L  S  P  V  *  I  D  L  K  S  V  T  F  K  K  L  T  F  *  S  V  *  N  L  F  C  S  *  K  K  I  V  D  M  F  G  K  *  I  R  A  G  K  D  F  F  F  N  Q  N  M  *   : I  N  Q  Q  I  L  H  *  Y  K  F  K  *  S  H  G  *  *  S  F  D  I  N  G  L  V  Q  I  Y  F  L  V  L  *  L  T  D  H  N  V  Y  *  S  L  T  Y  F  Y  W  H  I  I  N  H  F  P  T  R  I  S  Q  P  T  P  T  P  T  R  H  R  Q  Q  W  P  C  R  R  L  K  R  R  L  S  F  *  A  T  Q  R  H  L  R  T  L  A  P  H  S  P  P  V  L  Q  P  A  G  A  T  Y  L  D  I  S  S  V  F  C  P  C  L  S  I </first_frame>
            <second_frame>  R  C  *  G  K  *  I  H  A  V  V  Y  E  N  Y  K  E  V  G  W  E  A  C  T  Y  L  I  *  V  S  T  D   : E  C  C  T  E  R  D  C  P  Y  S  R  N  H  F  N  S  W  V  G  *  S  T  V  T  I  C  H  K  N  P  I  Y  Y  L  *  M  P  E  G  S  D  C  K  Y  S  I  C  C  I  K  L  T  K  *  S  W  K  E  S  T  W  K  G  E  S  K  K  E  G  D  G  Q  T  *  A  *  R  R  G  R  P  I  L  C  S  R  D  T  H  A  T  S  D  T  C  Y  S  F  *  C  *  S  F  S  P  I  S  H  R  Q  *  D  G  Q  S  S  F  V  H  Y  S  K  *  R  *  S  W  S  D  I  S  R  S  S  K  C  R  *  Y  *  F  L  *  R  C  *  G  S  *  *  I  T  L  P  S  S  S  W  R  T  R  *  P  S  L  Q  *  S  S  R  R  *  T  S  C  F  I  G  Y  R  G  S  S  G  L  P  *  N  *  R  G  C  C  T  A  E  R  L  W  G  S  C  L  D  Q  *  R  *  N  L  W  L  A  Q  F  S  V  H  L  E  M  F  F  S  S  V  L  I  E  E  K  E  N  Y  A  T  I  L  *  A  P  F  E  L  T  *  K  V  *  L  L  K  S  *  L  F  K  V  F  E  I  Y  F  A  V  E  K  K  L  L  I  C  L  A  N  K  *  G  L  V  K  T  F  F  L  I  K  I  C  E  :  *  I  N  K  Y  C  I  N  T  S  L  N  S  H  M  A  N  K  V  L  T  *  M  A  W  Y  K  F  I  F  W  F  F  N  L  L  I  T  M  F  T  D  L  *  L  T  F  T  G  I  L  L  T  T  S  Q  L  E  Y  P  N  Q  L  P  L  L  R  A  T  V  N  S  G  L  V  A  G  *  N  V  G  S  H  F  K  P  L  N  D  I  S  E  H  L  L  H  I  L  L  Q  F  S  N  Q  L  V  P  H  T  W  I  Y  L  Q  C  F  V  L  A  C  R   </second_frame>
            <third_frame>   D  V  E  E  S  E  Y  M  Q  W  Y  M  R  I  T  R  K  L  V  G  R  P  V  P  I  S  S  E  F  Q  R  M  :  N  A  A  L  R  E  I  A  H  I  A  E  T  I  S  T  H  G  L  D  D  Q  Q  L  Q  S  V  T  R  I  R  Y  I  T  Y  E  C  L  R  D  Q  I  A  S  T  V  F  V  A  S  N  S  Q  S  E  A  G  K  K  V  R  G  K  E  R  V  R  R  K  G  M  G  K  R  K  R  K  E  E  V  D  Q  Y  Y  A  A  G  I  P  M  Q  H  R  I  P  A  T  A  F  D  V  D  P  S  H  L  Y  H  I  G  N  E  M  D  N  P  H  L  C  I  T  V  S  E  D  D  H  G  R  I  S  H  V  A  Q  S  V  D  D  I  D  F  C  E  D  A  K  E  V  D  E  S  H  F  H  H  L  V  G  E  Q  D  D  H  L  S  S  E  V  A  E  D  K  P  H  A  S  L  D  I  V  V  P  Q  V  S  H  E  T  R  E  D  V  A  Q  Q  N  D  Y  G  V  L  V  *  T  S  K  D  E  I  Y  G  L  H  N  F  Q  F  I  W  R  C  F  S  P  L  S  *  L  R  R  K  K  I  M  Q  Q  Y  F  E  P  R  L  N  *  L  K  K  C  N  F  *  K  V  N  F  L  K  C  L  K  F  I  L  Q  L  K  K  N  C  *  Y  V  W  Q  I  N  K  G  W  *  R  L  F  F  *  S  K  Y  V  N :   K  S  T  N  I  A  L  I  Q  V  *  I  V  T  W  L  I  K  F  *  H  K  W  P  G  T  N  L  F  F  G  S  L  T  Y  *  S  Q  C  L  L  I  F  N  L  L  L  L  A  Y  Y  *  P  L  P  N  *  N  I  P  T  N  S  H  S  Y  A  P  P  S  T  V  A  L  S  P  V  E  T  S  A  L  I  L  S  H  S  T  T  S  P  N  T  C  S  T  F  S  S  S  S  P  T  S  W  C  H  I  P  G  Y  I  F  S  V  L  S  L  L  V  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25720" stop="25625"/>
                    <exon start="25494" stop="24883"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVEESEYMQWYMRITRKLVGRPVPISSEFQRMNAALREIAHIAETISTHGLDDQQLQSVTRIRYITYECLRDQIASTVFVASNSQSEAGKKVRGKERVRRKGMGKRKRKEEVDQYYAAGIPMQHRIPATAFDVDPSHLYHIGNEMDNPHLCITVSEDDHGRISHVAQSVDDIDFCEDAKEVDESHFHHLVGEQDDHLSSEVAEDKPHASLDIVVPQVSHETREDVAQQNDYGVLV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23728" stop="23537"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIPTNSHSYAPPSTVALSPVETSALILSHSTTSPNTCSTFSSSSPTSWCHIPGYIFSVLSLLVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="28783" PGL_stop="26476"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28783" e_stop="28536"/>
            <exon e_start="27280" e_stop="27166"/>
            <exon e_start="27062" e_stop="26777"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28783" e_stop="28536" e_length="248"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="28535" i_stop="27281" i_length="1255"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27280" e_stop="27166" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.964">
            <gDNA_intron_boundary i_start="27165" i_stop="27063" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="27062" e_stop="26777" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28783" stop="28536"/>
              <exon start="27280" stop="27166"/>
              <exon start="27062" stop="26891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28777" stop="28536"/>
              <exon start="27280" stop="27166"/>
              <exon start="27062" stop="26777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28776" stop="28536"/>
              <exon start="27280" stop="27166"/>
              <exon start="27062" stop="27008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28769" stop="28536"/>
              <exon start="27280" stop="27166"/>
              <exon start="27062" stop="26818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444399" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGACACCGTATTCGTCAGTCTCCCTAATTGTCCCCGCCGATTCCCAAAACTCCACCGACGACCACCGTAGCTTTTTCTCTCCGGTCGTTCTTCCGTCGATCTCTTCTCCGGAGATCTTCTTCTCCGTGCACCATTCATCTCTATCTCACTCGCTCCATATATACACACAAATACATACATACATATATTATCTCCCTATGGGTGTCTGATACCATTGGCAATTTCCTCGACTTGCTCTTTTTGCTG : AGGTATGTCATAAGCAGTAATGGTGGACTACTATGCAACTAACCCTGGACCAGTTGAGGATATTGTGCTGTACGATCAAGATAAACATGTATCATCTGCTGTTTGGGAGGGGCAG : GAGCGTGGTGCTCTTAGGTGCCATGAGCACACATCAAAGCTCGATCAGTGGATGCTCACAGAGAAACAGGTTGAGTTGGTTAAAATGGCTGGATTTGGCTATTTGAGAATGATACCGGCAATCAGTTTGGATAACCCACTCATATCTTCCCTAGTTGAGAGATGGAGAAGAGAAACAAACACATTCCATTTCACTGTTGGGGAAATGACTGTTACCCTTGAGGATGTCGCGTACTTGCTTGGGCTACCAGTTGATGGTGAGGCTGTTATAGGTGTGACATATACTT</gDNA_template>
            <first_frame> Y  D  T  V  F  V  S  L  P  N  C  P  R  R  F  P  K  L  H  R  R  P  P  *  L  F  L  S  G  R  S  S  V  D  L  F  S  G  D  L  L  L  R  A  P  F  I  S  I  S  L  A  P  Y  I  H  T  N  T  Y  I  H  I  L  S  P  Y  G  C  L  I  P  L  A  I  S  S  T  C  S  F  C  * :   G  M  S  *  A  V  M  V  D  Y  Y  A  T  N  P  G  P  V  E  D  I  V  L  Y  D  Q  D  K  H  V  S  S  A  V  W  E  G  Q  :  E  R  G  A  L  R  C  H  E  H  T  S  K  L  D  Q  W  M  L  T  E  K  Q  V  E  L  V  K  M  A  G  F  G  Y  L  R  M  I  P  A  I  S  L  D  N  P  L  I  S  S  L  V  E  R  W  R  R  E  T  N  T  F  H  F  T  V  G  E  M  T  V  T  L  E  D  V  A  Y  L  L  G  L  P  V  D  G  E  A  V  I  G  V  T  Y  T  </first_frame>
            <second_frame>  T  T  P  Y  S  S  V  S  L  I  V  P  A  D  S  Q  N  S  T  D  D  H  R  S  F  F  S  P  V  V  L  P  S  I  S  S  P  E  I  F  F  S  V  H  H  S  S  L  S  H  S  L  H  I  Y  T  Q  I  H  T  Y  I  Y  Y  L  P  M  G  V  *  Y  H  W  Q  F  P  R  L  A  L  F  A   : E  V  C  H  K  Q  *  W  W  T  T  M  Q  L  T  L  D  Q  L  R  I  L  C  C  T  I  K  I  N  M  Y  H  L  L  F  G  R  G  R :   S  V  V  L  L  G  A  M  S  T  H  Q  S  S  I  S  G  C  S  Q  R  N  R  L  S  W  L  K  W  L  D  L  A  I  *  E  *  Y  R  Q  S  V  W  I  T  H  S  Y  L  P  *  L  R  D  G  E  E  K  Q  T  H  S  I  S  L  L  G  K  *  L  L  P  L  R  M  S  R  T  C  L  G  Y  Q  L  M  V  R  L  L  *  V  *  H  I  L </second_frame>
            <third_frame>   R  H  R  I  R  Q  S  P  *  L  S  P  P  I  P  K  T  P  P  T  T  T  V  A  F  S  L  R  S  F  F  R  R  S  L  L  R  R  S  S  S  P  C  T  I  H  L  Y  L  T  R  S  I  Y  T  H  K  Y  I  H  T  Y  I  I  S  L  W  V  S  D  T  I  G  N  F  L  D  L  L  F  L  L  :  R  Y  V  I  S  S  N  G  G  L  L  C  N  *  P  W  T  S  *  G  Y  C  A  V  R  S  R  *  T  C  I  I  C  C  L  G  G  A   : G  A  W  C  S  *  V  P  *  A  H  I  K  A  R  S  V  D  A  H  R  E  T  G  *  V  G  *  N  G  W  I  W  L  F  E  N  D  T  G  N  Q  F  G  *  P  T  H  I  F  P  S  *  E  M  E  K  R  N  K  H  I  P  F  H  C  W  G  N  D  C  Y  P  *  G  C  R  V  L  A  W  A  T  S  *  W  *  G  C  Y  R  C  D  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27267" stop="27166"/>
                    <exon start="27062" stop="26778"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVMVDYYATNPGPVEDIVLYDQDKHVSSAVWEGQERGALRCHEHTSKLDQWMLTEKQVELVKMAGFGYLRMIPAISLDNPLISSLVERWRRETNTFHFTVGEMTVTLEDVAYLLGLPVDGEAVIGVTYT</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28754" stop="28536"/>
                    <exon start="27280" stop="27239"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSPPIPKTPPTTTVAFSLRSFFRRSLLRRSSSPCTIHLYLTRSIYTHKYIHTYIISLWVSDTIGNFLDLLFLLRYVISSNGGLLCN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="27063" e_stop="26476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="27063" e_stop="26476" e_length="588"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27063" stop="26476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448866" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGCGTGGTGCTCTTAGGTGCCATGAGCACACATCAAAGCTCGATCAGTGGATGCTCACAGAGAAACAGGTTGAGTTGGTTAAAATGGCTGGATTTGGCTATTTGAGAATGATACCGGCAATCAGTTTGGATAACCCACTCATATCTTCCCTAGTTGAGAGATGGAGAAGAGAAACAAACACATTCCATTTCACTGTTGGGGAAATGACTGTTACCCTTGAGGATGTCGCGTACTTGCTTGGGCTACCAGTTGATGGTGAGGCTGTTATAGGTGTGACATATACTTCATGTGAAGCAGTCTGTATCAAATTGTTGGGGAAAGCACCTGACTCTGGATATACGAGTGGTGGGATGGTGAAGCTTAGTTGGTTAAAAGAGACCTTCTCCCAGTGTCCGGAGGATGCTTCCATGGAGGATATTGCTCGTTGTACACGTGCTTATCTTCTTTACCTGGTTGGTAGCACCATCTTTTCAACTACAACTGGCAATAAAGTACCTGTCATGTACCTTCCACTGTTCGAAAATTTTGATGAAGCTGGCAAGTATGCTTGGGGTGCTGCAGCATTATCCTTCTTGTACAGAGCACT</gDNA_template>
            <first_frame> G  A  W  C  S  *  V  P  *  A  H  I  K  A  R  S  V  D  A  H  R  E  T  G  *  V  G  *  N  G  W  I  W  L  F  E  N  D  T  G  N  Q  F  G  *  P  T  H  I  F  P  S  *  E  M  E  K  R  N  K  H  I  P  F  H  C  W  G  N  D  C  Y  P  *  G  C  R  V  L  A  W  A  T  S  *  W  *  G  C  Y  R  C  D  I  Y  F  M  *  S  S  L  Y  Q  I  V  G  E  S  T  *  L  W  I  Y  E  W  W  D  G  E  A  *  L  V  K  R  D  L  L  P  V  S  G  G  C  F  H  G  G  Y  C  S  L  Y  T  C  L  S  S  L  P  G  W  *  H  H  L  F  N  Y  N  W  Q  *  S  T  C  H  V  P  S  T  V  R  K  F  *  *  S  W  Q  V  C  L  G  C  C  S  I  I  L  L  V  Q  S  T </first_frame>
            <second_frame>  E  R  G  A  L  R  C  H  E  H  T  S  K  L  D  Q  W  M  L  T  E  K  Q  V  E  L  V  K  M  A  G  F  G  Y  L  R  M  I  P  A  I  S  L  D  N  P  L  I  S  S  L  V  E  R  W  R  R  E  T  N  T  F  H  F  T  V  G  E  M  T  V  T  L  E  D  V  A  Y  L  L  G  L  P  V  D  G  E  A  V  I  G  V  T  Y  T  S  C  E  A  V  C  I  K  L  L  G  K  A  P  D  S  G  Y  T  S  G  G  M  V  K  L  S  W  L  K  E  T  F  S  Q  C  P  E  D  A  S  M  E  D  I  A  R  C  T  R  A  Y  L  L  Y  L  V  G  S  T  I  F  S  T  T  T  G  N  K  V  P  V  M  Y  L  P  L  F  E  N  F  D  E  A  G  K  Y  A  W  G  A  A  A  L  S  F  L  Y  R  A   </second_frame>
            <third_frame>   S  V  V  L  L  G  A  M  S  T  H  Q  S  S  I  S  G  C  S  Q  R  N  R  L  S  W  L  K  W  L  D  L  A  I  *  E  *  Y  R  Q  S  V  W  I  T  H  S  Y  L  P  *  L  R  D  G  E  E  K  Q  T  H  S  I  S  L  L  G  K  *  L  L  P  L  R  M  S  R  T  C  L  G  Y  Q  L  M  V  R  L  L  *  V  *  H  I  L  H  V  K  Q  S  V  S  N  C  W  G  K  H  L  T  L  D  I  R  V  V  G  W  *  S  L  V  G  *  K  R  P  S  P  S  V  R  R  M  L  P  W  R  I  L  L  V  V  H  V  L  I  F  F  T  W  L  V  A  P  S  F  Q  L  Q  L  A  I  K  Y  L  S  C  T  F  H  C  S  K  I  L  M  K  L  A  S  M  L  G  V  L  Q  H  Y  P  S  C  T  E  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27062" stop="26478"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERGALRCHEHTSKLDQWMLTEKQVELVKMAGFGYLRMIPAISLDNPLISSLVERWRRETNTFHFTVGEMTVTLEDVAYLLGLPVDGEAVIGVTYTSCEAVCIKLLGKAPDSGYTSGGMVKLSWLKETFSQCPEDASMEDIARCTRAYLLYLVGSTIFSTTTGNKVPVMYLPLFENFDEAGKYAWGAAALSFLYRA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="28774" e_stop="28536"/>
            <exon e_start="27295" e_stop="27166"/>
            <exon e_start="27062" e_stop="26880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.879"/>
          <exon-intron don_prob="0.963" acc_prob="0.964" e_score="0.954"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.879">
            <gDNA_exon_boundary e_start="28774" e_stop="28536" e_length="239"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28535" i_stop="27296" i_length="1240"/>
          </intron>
          <exon e_serial="2" e_score="0.954">
            <gDNA_exon_boundary e_start="27295" e_stop="27166" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.964">
            <gDNA_intron_boundary i_start="27165" i_stop="27063" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="27062" e_stop="26880" e_length="183"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28774" stop="28536"/>
              <exon start="27295" stop="27166"/>
              <exon start="27062" stop="26880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTATTCGTCAGTCTCCCTAATTGTCCCCGCCGATTCCCAAAACTCCACCGACGACCACCGTAGCTTTTTCTCTCCGGTCGTTCTTCCGTCGATCTCTTCTCCGGAGATCTTCTTCTCCGTGCACCATTCATCTCTATCTCACTCGCTCCATATATACACACAAATACATACATACATATATTATCTCCCTATGGGTGTCTGATACCATTGGCAATTTCCTCGACTTGCTCTTTTTGCTG : TTTGTCTTGTTTCAGAGGTATGTCATAAGCAGTAATGGTGGACTACTATGCAACTAACCCTGGACCAGTTGAGGATATTGTGCTGTACGATCAAGATAAACATGTATCATCTGCTGTTTGGGAGGGGCAG : GAGCGTGGTGCTCTTAGGTGCCATGAGCACACATCAAAGCTCGATCAGTGGATGCTCACAGAGAAACAGGTTGAGTTGGTTAAAATGGCTGGATTTGGCTATTTGAGAATGATACCGGCAATCAGTTTGGATAACCCACTCATATCTTCCCTAGTTGAGAGATGGAGAAGAGAAACAAACACA</gDNA_template>
            <first_frame> V  F  V  S  L  P  N  C  P  R  R  F  P  K  L  H  R  R  P  P  *  L  F  L  S  G  R  S  S  V  D  L  F  S  G  D  L  L  L  R  A  P  F  I  S  I  S  L  A  P  Y  I  H  T  N  T  Y  I  H  I  L  S  P  Y  G  C  L  I  P  L  A  I  S  S  T  C  S  F  C  C :   L  S  C  F  R  G  M  S  *  A  V  M  V  D  Y  Y  A  T  N  P  G  P  V  E  D  I  V  L  Y  D  Q  D  K  H  V  S  S  A  V  W  E  G  Q  :  E  R  G  A  L  R  C  H  E  H  T  S  K  L  D  Q  W  M  L  T  E  K  Q  V  E  L  V  K  M  A  G  F  G  Y  L  R  M  I  P  A  I  S  L  D  N  P  L  I  S  S  L  V  E  R  W  R  R  E  T  N  T </first_frame>
            <second_frame>  Y  S  S  V  S  L  I  V  P  A  D  S  Q  N  S  T  D  D  H  R  S  F  F  S  P  V  V  L  P  S  I  S  S  P  E  I  F  F  S  V  H  H  S  S  L  S  H  S  L  H  I  Y  T  Q  I  H  T  Y  I  Y  Y  L  P  M  G  V  *  Y  H  W  Q  F  P  R  L  A  L  F  A   : V  C  L  V  S  E  V  C  H  K  Q  *  W  W  T  T  M  Q  L  T  L  D  Q  L  R  I  L  C  C  T  I  K  I  N  M  Y  H  L  L  F  G  R  G  R :   S  V  V  L  L  G  A  M  S  T  H  Q  S  S  I  S  G  C  S  Q  R  N  R  L  S  W  L  K  W  L  D  L  A  I  *  E  *  Y  R  Q  S  V  W  I  T  H  S  Y  L  P  *  L  R  D  G  E  E  K  Q  T   </second_frame>
            <third_frame>   I  R  Q  S  P  *  L  S  P  P  I  P  K  T  P  P  T  T  T  V  A  F  S  L  R  S  F  F  R  R  S  L  L  R  R  S  S  S  P  C  T  I  H  L  Y  L  T  R  S  I  Y  T  H  K  Y  I  H  T  Y  I  I  S  L  W  V  S  D  T  I  G  N  F  L  D  L  L  F  L  L  :  F  V  L  F  Q  R  Y  V  I  S  S  N  G  G  L  L  C  N  *  P  W  T  S  *  G  Y  C  A  V  R  S  R  *  T  C  I  I  C  C  L  G  G  A   : G  A  W  C  S  *  V  P  *  A  H  I  K  A  R  S  V  D  A  H  R  E  T  G  *  V  G  *  N  G  W  I  W  L  F  E  N  D  T  G  N  Q  F  G  *  P  T  H  I  F  P  S  *  E  M  E  K  R  N  K  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27267" stop="27166"/>
                    <exon start="27062" stop="26880"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVMVDYYATNPGPVEDIVLYDQDKHVSSAVWEGQERGALRCHEHTSKLDQWMLTEKQVELVKMAGFGYLRMIPAISLDNPLISSLVERWRRETNT</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28754" stop="28536"/>
                    <exon start="27295" stop="27239"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSPPIPKTPPTTTVAFSLRSFFRRSLLRRSSSPCTIHLYLTRSIYTHKYIHTYIISLWVSDTIGNFLDLLFLLFVLFQRYVISSNGGLLCN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28711" stop="28536"/>
                    <exon start="27295" stop="27268"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFLSGRSSVDLFSGDLLLRAPFISISLAPYIHTNTYIHILSPYGCLIPLAISSTCSFCCLSCFRGMS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28773" stop="28573"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSSVSLIVPADSQNSTDDHRSFFSPVVLPSISSPEIFFSVHHSSLSHSLHIYTQIHTYIYYLPMGV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27260" stop="27166"/>
                    <exon start="27062" stop="26957"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WWTTMQLTLDQLRILCCTIKINMYHLLFGRGRSVVLLGAMSTHQSSISGCSQRNRLSWLKWLDLAI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="29704" PGL_stop="34316"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29704" e_stop="29768"/>
            <exon e_start="32256" e_stop="32369"/>
            <exon e_start="33059" e_stop="33159"/>
            <exon e_start="33889" e_stop="34316"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.877" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.580" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29704" e_stop="29768" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.877" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29769" i_stop="32255" i_length="2487"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32256" e_stop="32369" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.580">
            <gDNA_intron_boundary i_start="32370" i_stop="33058" i_length="689"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33059" e_stop="33159" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.955" acc_prob="0.995">
            <gDNA_intron_boundary i_start="33160" i_stop="33888" i_length="729"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33889" e_stop="34316" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29704" stop="29768"/>
              <exon start="32256" stop="32369"/>
              <exon start="33059" stop="33159"/>
              <exon start="33889" stop="34296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29704" stop="29768"/>
              <exon start="32256" stop="32369"/>
              <exon start="33059" stop="33159"/>
              <exon start="33889" stop="34249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29704" stop="29768"/>
              <exon start="32256" stop="32369"/>
              <exon start="33059" stop="33159"/>
              <exon start="33889" stop="34129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29710" stop="29768"/>
              <exon start="32256" stop="32369"/>
              <exon start="33059" stop="33159"/>
              <exon start="33889" stop="34303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29710" stop="29768"/>
              <exon start="32256" stop="32369"/>
              <exon start="33059" stop="33159"/>
              <exon start="33889" stop="34303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29710" stop="29768"/>
              <exon start="32256" stop="32369"/>
              <exon start="33059" stop="33159"/>
              <exon start="33889" stop="34302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29710" stop="29768"/>
              <exon start="32256" stop="32369"/>
              <exon start="33059" stop="33159"/>
              <exon start="33889" stop="34287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29710" stop="29768"/>
              <exon start="32256" stop="32369"/>
              <exon start="33059" stop="33159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29711" stop="29768"/>
              <exon start="32256" stop="32369"/>
              <exon start="33059" stop="33159"/>
              <exon start="33889" stop="34234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29711" stop="29768"/>
              <exon start="32256" stop="32369"/>
              <exon start="33059" stop="33159"/>
              <exon start="33889" stop="34234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29711" stop="29768"/>
              <exon start="32256" stop="32369"/>
              <exon start="33059" stop="33159"/>
              <exon start="33889" stop="33938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29712" stop="29768"/>
              <exon start="32256" stop="32369"/>
              <exon start="33059" stop="33159"/>
              <exon start="33889" stop="34234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29715" stop="29768"/>
              <exon start="32256" stop="32369"/>
              <exon start="33059" stop="33159"/>
              <exon start="33889" stop="34105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32256" stop="32369"/>
              <exon start="33059" stop="33159"/>
              <exon start="33889" stop="34264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32256" stop="32369"/>
              <exon start="33059" stop="33159"/>
              <exon start="33889" stop="34138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32261" stop="32369"/>
              <exon start="33059" stop="33159"/>
              <exon start="33889" stop="34122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32281" stop="32369"/>
              <exon start="33059" stop="33159"/>
              <exon start="33889" stop="34316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556365" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32286" stop="32369"/>
              <exon start="33059" stop="33159"/>
              <exon start="33889" stop="34303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32307" stop="32369"/>
              <exon start="33059" stop="33159"/>
              <exon start="33889" stop="34303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393336" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCCATACACAGAAAAAAGCTTTCAAAGTTTAGCTGCACCGATTTCGATTCTCAGTTTCTACAG : TTTTATAAGTGTATCAGACGAGTATGGAATCCAACAGGGGCAACCAAAATGGAATTCAACAACTTTTAGGTGCAGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGGAGTG : CAAAACAGGCTAGATTGAAACAGGCAAAGGATGAAGCTGAGAAGGAGATAGCTGAATTTCGTGCATTCATGGAGGCCGAGTTCCAGAGAAAGCTTGAACAG : ACTAGCGGTGATTCGGGTGCTAATGTCAAACGTCTTGATCAAGAAACGTTTGCAAAGATCCAACACTTGAAAGCAGAATCTGAAAGCATCTCCAACGATGTTGTCCAGATGCTTCTGAGGCAGGTAACCACAGTAAAGAACTAAGATTCATCTCTGAATGATTACCAGGATCAAGTTTATGGTCATTTTCTGCTGATTCTTGGTTCTCCATAATTCTGGTTTTCTTGCTACACCAGTTTAATGGTTGTTCTCCATTTTGTGTTGTATATTTATTTATCACTATTGGTCATCTTGGCCCTAGTTGAATAAAATAAATCATATACTGATGTTCTATGAAGACAAATTTTGGATATAACTTACCCACACAATGTGATTATTTCCCGAATGAATGAAATACGTGTTATGCATATAGTTTTTCTCAAGTGATA</gDNA_template>
            <first_frame> F  P  Y  T  E  K  S  F  Q  S  L  A  A  P  I  S  I  L  S  F  Y  S :   F  I  S  V  S  D  E  Y  G  I  Q  Q  G  Q  P  K  W  N  S  T  T  F  R  C  R  A  R  S  S  T  H  C  Q  C  C  Q  E  C :   K  T  G  *  I  E  T  G  K  G  *  S  *  E  G  D  S  *  I  S  C  I  H  G  G  R  V  P  E  K  A  *  T   : D  *  R  *  F  G  C  *  C  Q  T  S  *  S  R  N  V  C  K  D  P  T  L  E  S  R  I  *  K  H  L  Q  R  C  C  P  D  A  S  E  A  G  N  H  S  K  E  L  R  F  I  S  E  *  L  P  G  S  S  L  W  S  F  S  A  D  S  W  F  S  I  I  L  V  F  L  L  H  Q  F  N  G  C  S  P  F  C  V  V  Y  L  F  I  T  I  G  H  L  G  P  S  *  I  K  *  I  I  Y  *  C  S  M  K  T  N  F  G  Y  N  L  P  T  Q  C  D  Y  F  P  N  E  *  N  T  C  Y  A  Y  S  F  S  Q  V  I </first_frame>
            <second_frame>  F  H  T  Q  K  K  A  F  K  V  *  L  H  R  F  R  F  S  V  S  T   : V  L  *  V  Y  Q  T  S  M  E  S  N  R  G  N  Q  N  G  I  Q  Q  L  L  G  A  E  Q  E  A  Q  H  I  V  N  A  A  R  S   : A  K  Q  A  R  L  K  Q  A  K  D  E  A  E  K  E  I  A  E  F  R  A  F  M  E  A  E  F  Q  R  K  L  E  Q  :  T  S  G  D  S  G  A  N  V  K  R  L  D  Q  E  T  F  A  K  I  Q  H  L  K  A  E  S  E  S  I  S  N  D  V  V  Q  M  L  L  R  Q  V  T  T  V  K  N  *  D  S  S  L  N  D  Y  Q  D  Q  V  Y  G  H  F  L  L  I  L  G  S  P  *  F  W  F  S  C  Y  T  S  L  M  V  V  L  H  F  V  L  Y  I  Y  L  S  L  L  V  I  L  A  L  V  E  *  N  K  S  Y  T  D  V  L  *  R  Q  I  L  D  I  T  Y  P  H  N  V  I  I  S  R  M  N  E  I  R  V  M  H  I  V  F  L  K  *   </second_frame>
            <third_frame>   S  I  H  R  K  K  L  S  K  F  S  C  T  D  F  D  S  Q  F  L  Q  :  F  Y  K  C  I  R  R  V  W  N  P  T  G  A  T  K  M  E  F  N  N  F  *  V  Q  S  K  K  L  N  T  L  S  M  L  P  G  V  :  Q  N  R  L  D  *  N  R  Q  R  M  K  L  R  R  R  *  L  N  F  V  H  S  W  R  P  S  S  R  E  S  L  N  R :   L  A  V  I  R  V  L  M  S  N  V  L  I  K  K  R  L  Q  R  S  N  T  *  K  Q  N  L  K  A  S  P  T  M  L  S  R  C  F  *  G  R  *  P  Q  *  R  T  K  I  H  L  *  M  I  T  R  I  K  F  M  V  I  F  C  *  F  L  V  L  H  N  S  G  F  L  A  T  P  V  *  W  L  F  S  I  L  C  C  I  F  I  Y  H  Y  W  S  S  W  P  *  L  N  K  I  N  H  I  L  M  F  Y  E  D  K  F  W  I  *  L  T  H  T  M  *  L  F  P  E  *  M  K  Y  V  L  C  I  *  F  F  S  S  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32264" stop="32369"/>
                    <exon start="33059" stop="33159"/>
                    <exon start="33889" stop="34032"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQTSMESNRGNQNGIQQLLGAEQEAQHIVNAARSAKQARLKQAKDEAEKEIAEFRAFMEAEFQRKLEQTSGDSGANVKRLDQETFAKIQHLKAESESISNDVVQMLLRQVTTVKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="37863" PGL_stop="47888"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37863" e_stop="39277"/>
            <exon e_start="41568" e_stop="41867"/>
            <exon e_start="46714" e_stop="47122"/>
            <exon e_start="47868" e_stop="47888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="0.996"/>
          <exon-intron don_prob="0.999" acc_prob="0.681" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.810"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="37863" e_stop="39277" e_length="1415"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="39278" i_stop="41567" i_length="2290"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41568" e_stop="41867" e_length="300"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.681">
            <gDNA_intron_boundary i_start="41868" i_stop="46713" i_length="4846"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46714" e_stop="47122" e_length="409"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47123" i_stop="47867" i_length="745"/>
          </intron>
          <exon e_serial="4" e_score="0.810">
            <gDNA_exon_boundary e_start="47868" e_stop="47888" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37863" stop="38527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37865" stop="38594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37865" stop="38588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37870" stop="38427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37879" stop="38401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37880" stop="38611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37886" stop="38527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37917" stop="38653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37918" stop="38402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37994" stop="38585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38201" stop="38637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38233" stop="38924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38233" stop="38833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38281" stop="38781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38357" stop="38916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38454" stop="39031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38477" stop="39188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38477" stop="38813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38606" stop="39277"/>
              <exon start="41568" stop="41656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38874" stop="39277"/>
              <exon start="41568" stop="41867"/>
              <exon start="46714" stop="46763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41568" stop="41867"/>
              <exon start="46714" stop="47120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41784" stop="41867"/>
              <exon start="46714" stop="47122"/>
              <exon start="47868" stop="47888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275643" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGAAAAGAGATATTCCCACCAACAAACACATATATACTGATCAAATTCCTTCCCCAAAATCACTTTTCAGATCAATTTTGAAGCATCTCTGAGGTAAAAGGAGATTGAAAAACTTCACGCTTGTGTAGGTAAAATACCTTTATATGGGTTGAAGGTTGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAGCAGATGGGTATTGAGGATATGGGAGAAATTAGGTGATTCCAATAAAGAGTCTTTTGAAATTTTTGGAGTTTTTTTTGAATTGGATTTGTTAAGAAATGGAGTCAAATATTATATCAGATATGCGGTTAGAACCGAGCATTGATACAGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAACTTCTAGAGGAACAAGGTAGAAGAATTTATCCTTCAAAAGGGTCGACTTCTGCCGGAAATGGTTTTCTCCGGCGAGTTCTCCGAGGTGGCGCAACCCGTTCTGATGCTTCCGGTTTAGAGAAAGTGATGAAAGAAGCATTTATGGATAAAAAAACCGGTCGAAGCCTTACGTTAAAGGATACTCTTAAACCGGTTTTAATCCCCTGTTATGACCTTTCCAGTACTGCACCGTTTTTGTTCTCCCGAGCTGATGCTTTCGAATCGGAAAGCTTTGATTTCCGGTTATGGGAAGTTTGCCGGGCTACATCAGCTGAACCGGGACTCTTCGAACCGGTTTGTATGAAATCCGTCGATGGAAAAACCGGATGCGTGGCGGTTGACGGCGGTTTAGCAATGAGCAACCCGACGGCCGCCGCGATTACCCACGTTCTTCATAACAAACAGGAATTTCCTTTCGTTAGAGGTGTTGAGGACATTTTGGTTCTTTCACTTGGAACAGGGCAGCTTCTAGAAGGAAGCTTCCAATATGAACATGTTAAAAAATGGAAGGCTAAGGACTGGGCTAAGCCAATGGCCCGAATCTCCGGCGATGGTGCCGCCGATATGGTGGATCACTCCGTCGCCATGGCGTTTGGGCAATGTCGGAGTAGTAATTACGTCCGTATTCAG : GCTAATGGATCGAGCTTCGGTCGTTGTGGGGTGAACATAGATGCTGATCCAAGTCCTAACAATGTGAAAAAGCTTGTGGGAATTGCAGATGAAATGCTGAAACAGAAAAATGTAGAGTCCCTACTATTCGGTGGTAAGAAAATTGCAGAACAAAGCAATTTCCAGAAACTTGATTGGTTTGCTGGAGAACTTGTACAAGAGCATCAGAGGAGGAGTTGCAGGATAGCTCCCACTGTTGCATTTAAGCAACATCTCACAAATCAAGAAAAATAAATGAAAAGATCAAAAAAGAAAGATTTG : GAAAAGTTGCTTTCAAAATTAGAGTTGGTATTTTAAAAAAAAAAAAAGTAAAGATGATAAAATAGTAACCTTTACTTTTTGGAAGAGTGAAAGATAAAGCTAGTGGGTTCCTTCGGGGAAATTTCATGGATTGAAGTGAAAAGGACATTCGATTGTTTATAATGAGAAAAAAAAAAGAGAACAAGAAGGGATTTGATGAATCTTGGTGGGAACTTTTTTGCCTTCCATAGGACAGGCATTGTGATGATTGCCTTTTTTATAAAATGTTTATTCGTATAGAGTGTTTATATTAAATGAAGGTAACTATAAAAAGAAATATTCAATGCGTAATCATGATTGAGAGATAAATGTGTGTATGTATAGACATGTTATGTATTCTTGATTTGGTGCAAGTATTCGGTGTAGATAT : AAATGAAAAGAAAAAAAACAC</gDNA_template>
            <first_frame> G  K  R  D  I  P  T  N  K  H  I  Y  T  D  Q  I  P  S  P  K  S  L  F  R  S  I  L  K  H  L  *  G  K  R  R  L  K  N  F  T  L  V  *  V  K  Y  L  Y  M  G  *  R  L  N  F  F  S  C  L  F  W  E  N  Q  Q  M  G  I  E  D  M  G  E  I  R  *  F  Q  *  R  V  F  *  N  F  W  S  F  F  *  I  G  F  V  K  K  W  S  Q  I  L  Y  Q  I  C  G  *  N  R  A  L  I  Q  I  S  *  V  T  R  F  S  L  F  *  K  A  N  S  Y  L  V  T  M  I  K  S  F  G  Y  Q  K  I  Y  R  L  R  L  K  M  A  K  T  T  A  F  *  P  P  Q  R  R  K  I  F  R  R  L  R  I  N  E  E  K  Y  V  S  S  A  L  M  V  V  E  C  E  I  Y  Y  Q  V  K  L  *  R  I  W  N  K  R  *  R  L  N  R  G  I  Q  K  L  E  S  P  I  I  S  T  L  L  L  V  P  A  L  E  E  F  S  R  R  C  Y  F  Q  R  R  I  K  T  V  L  F  S  K  L  K  I  H  G  N  F  *  R  N  K  V  E  E  F  I  L  Q  K  G  R  L  L  P  E  M  V  F  S  G  E  F  S  E  V  A  Q  P  V  L  M  L  P  V  *  R  K  *  *  K  K  H  L  W  I  K  K  P  V  E  A  L  R  *  R  I  L  L  N  R  F  *  S  P  V  M  T  F  P  V  L  H  R  F  C  S  P  E  L  M  L  S  N  R  K  A  L  I  S  G  Y  G  K  F  A  G  L  H  Q  L  N  R  D  S  S  N  R  F  V  *  N  P  S  M  E  K  P  D  A  W  R  L  T  A  V  *  Q  *  A  T  R  R  P  P  R  L  P  T  F  F  I  T  N  R  N  F  L  S  L  E  V  L  R  T  F  W  F  F  H  L  E  Q  G  S  F  *  K  E  A  S  N  M  N  M  L  K  N  G  R  L  R  T  G  L  S  Q  W  P  E  S  P  A  M  V  P  P  I  W  W  I  T  P  S  P  W  R  L  G  N  V  G  V  V  I  T  S  V  F  R :   L  M  D  R  A  S  V  V  V  G  *  T  *  M  L  I  Q  V  L  T  M  *  K  S  L  W  E  L  Q  M  K  C  *  N  R  K  M  *  S  P  Y  Y  S  V  V  R  K  L  Q  N  K  A  I  S  R  N  L  I  G  L  L  E  N  L  Y  K  S  I  R  G  G  V  A  G  *  L  P  L  L  H  L  S  N  I  S  Q  I  K  K  N  K  *  K  D  Q  K  R  K  I  W :   K  S  C  F  Q  N  *  S  W  Y  F  K  K  K  K  S  K  D  D  K  I  V  T  F  T  F  W  K  S  E  R  *  S  *  W  V  P  S  G  K  F  H  G  L  K  *  K  G  H  S  I  V  Y  N  E  K  K  K  R  E  Q  E  G  I  *  *  I  L  V  G  T  F  L  P  S  I  G  Q  A  L  *  *  L  P  F  L  *  N  V  Y  S  Y  R  V  F  I  L  N  E  G  N  Y  K  K  K  Y  S  M  R  N  H  D  *  E  I  N  V  C  M  Y  R  H  V  M  Y  S  *  F  G  A  S  I  R  C  R  Y  :  K  *  K  E  K  K  H </first_frame>
            <second_frame>  G  K  E  I  F  P  P  T  N  T  Y  I  L  I  K  F  L  P  Q  N  H  F  S  D  Q  F  *  S  I  S  E  V  K  G  D  *  K  T  S  R  L  C  R  *  N  T  F  I  W  V  E  G  *  I  F  S  A  V  C  F  G  K  I  S  R  W  V  L  R  I  W  E  K  L  G  D  S  N  K  E  S  F  E  I  F  G  V  F  F  E  L  D  L  L  R  N  G  V  K  Y  Y  I  R  Y  A  V  R  T  E  H  *  Y  R  *  A  K  L  R  D  F  L  Y  S  R  K  Q  I  L  I  W  L  R  *  S  K  A  L  G  T  K  K  F  T  V  S  G  *  R  W  Q  K  R  R  R  F  N  L  H  S  D  G  K  Y  S  G  D  *  E  S  T  R  K  N  M  Y  P  Q  H  *  W  W  W  N  A  K  Y  I  I  R  *  S  F  S  V  F  G  T  S  V  E  G  *  I  G  E  S  R  S  *  N  R  R  L  F  R  R  C  C  W  F  R  R  W  R  N  F  H  G  D  V  I  F  N  E  G  S  K  P  S  C  F  P  S  *  R  Y  M  E  T  S  R  G  T  R  *  K  N  L  S  F  K  R  V  D  F  C  R  K  W  F  S  P  A  S  S  P  R  W  R  N  P  F  *  C  F  R  F  R  E  S  D  E  R  S  I  Y  G  *  K  N  R  S  K  P  Y  V  K  G  Y  S  *  T  G  F  N  P  L  L  *  P  F  Q  Y  C  T  V  F  V  L  P  S  *  C  F  R  I  G  K  L  *  F  P  V  M  G  S  L  P  G  Y  I  S  *  T  G  T  L  R  T  G  L  Y  E  I  R  R  W  K  N  R  M  R  G  G  *  R  R  F  S  N  E  Q  P  D  G  R  R  D  Y  P  R  S  S  *  Q  T  G  I  S  F  R  *  R  C  *  G  H  F  G  S  F  T  W  N  R  A  A  S  R  R  K  L  P  I  *  T  C  *  K  M  E  G  *  G  L  G  *  A  N  G  P  N  L  R  R  W  C  R  R  Y  G  G  S  L  R  R  H  G  V  W  A  M  S  E  *  *  L  R  P  Y  S   : G  *  W  I  E  L  R  S  L  W  G  E  H  R  C  *  S  K  S  *  Q  C  E  K  A  C  G  N  C  R  *  N  A  E  T  E  K  C  R  V  P  T  I  R  W  *  E  N  C  R  T  K  Q  F  P  E  T  *  L  V  C  W  R  T  C  T  R  A  S  E  E  E  L  Q  D  S  S  H  C  C  I  *  A  T  S  H  K  S  R  K  I  N  E  K  I  K  K  E  R  F   : G  K  V  A  F  K  I  R  V  G  I  L  K  K  K  K  V  K  M  I  K  *  *  P  L  L  F  G  R  V  K  D  K  A  S  G  F  L  R  G  N  F  M  D  *  S  E  K  D  I  R  L  F  I  M  R  K  K  K  E  N  K  K  G  F  D  E  S  W  W  E  L  F  C  L  P  *  D  R  H  C  D  D  C  L  F  Y  K  M  F  I  R  I  E  C  L  Y  *  M  K  V  T  I  K  R  N  I  Q  C  V  I  M  I  E  R  *  M  C  V  C  I  D  M  L  C  I  L  D  L  V  Q  V  F  G  V  D  I :   N  E  K  K  K  N   </second_frame>
            <third_frame>   E  K  R  Y  S  H  Q  Q  T  H  I  Y  *  S  N  S  F  P  K  I  T  F  Q  I  N  F  E  A  S  L  R  *  K  E  I  E  K  L  H  A  C  V  G  K  I  P  L  Y  G  L  K  V  E  F  F  Q  L  F  V  L  G  K  S  A  D  G  Y  *  G  Y  G  R  N  *  V  I  P  I  K  S  L  L  K  F  L  E  F  F  L  N  W  I  C  *  E  M  E  S  N  I  I  S  D  M  R  L  E  P  S  I  D  T  D  K  L  S  Y  E  I  F  S  I  L  E  S  K  F  L  F  G  Y  D  D  Q  K  L  W  V  P  K  N  L  P  S  P  V  E  D  G  K  N  D  G  V  L  T  S  T  A  T  E  N  I  Q  A  I  K  N  Q  R  G  K  I  C  I  L  S  I  D  G  G  G  M  R  N  I  L  S  G  K  A  L  A  Y  L  E  Q  A  L  K  V  K  S  G  N  P  E  A  R  I  A  D  Y  F  D  V  A  V  G  S  G  V  G  G  I  F  T  A  M  L  F  S  T  K  D  Q  N  R  P  V  F  Q  A  E  D  T  W  K  L  L  E  E  Q  G  R  R  I  Y  P  S  K  G  S  T  S  A  G  N  G  F  L  R  R  V  L  R  G  G  A  T  R  S  D  A  S  G  L  E  K  V  M  K  E  A  F  M  D  K  K  T  G  R  S  L  T  L  K  D  T  L  K  P  V  L  I  P  C  Y  D  L  S  S  T  A  P  F  L  F  S  R  A  D  A  F  E  S  E  S  F  D  F  R  L  W  E  V  C  R  A  T  S  A  E  P  G  L  F  E  P  V  C  M  K  S  V  D  G  K  T  G  C  V  A  V  D  G  G  L  A  M  S  N  P  T  A  A  A  I  T  H  V  L  H  N  K  Q  E  F  P  F  V  R  G  V  E  D  I  L  V  L  S  L  G  T  G  Q  L  L  E  G  S  F  Q  Y  E  H  V  K  K  W  K  A  K  D  W  A  K  P  M  A  R  I  S  G  D  G  A  A  D  M  V  D  H  S  V  A  M  A  F  G  Q  C  R  S  S  N  Y  V  R  I  Q  :  A  N  G  S  S  F  G  R  C  G  V  N  I  D  A  D  P  S  P  N  N  V  K  K  L  V  G  I  A  D  E  M  L  K  Q  K  N  V  E  S  L  L  F  G  G  K  K  I  A  E  Q  S  N  F  Q  K  L  D  W  F  A  G  E  L  V  Q  E  H  Q  R  R  S  C  R  I  A  P  T  V  A  F  K  Q  H  L  T  N  Q  E  K  *  M  K  R  S  K  K  K  D  L  :  E  K  L  L  S  K  L  E  L  V  F  *  K  K  K  K  *  R  *  *  N  S  N  L  Y  F  L  E  E  *  K  I  K  L  V  G  S  F  G  E  I  S  W  I  E  V  K  R  T  F  D  C  L  *  *  E  K  K  K  R  T  R  R  D  L  M  N  L  G  G  N  F  F  A  F  H  R  T  G  I  V  M  I  A  F  F  I  K  C  L  F  V  *  S  V  Y  I  K  *  R  *  L  *  K  E  I  F  N  A  *  S  *  L  R  D  K  C  V  Y  V  *  T  C  Y  V  F  L  I  W  C  K  Y  S  V  *  I   : *  M  K  R  K  K  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38147" stop="39277"/>
                    <exon start="41568" stop="41840"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1401</number_coding_nucleotides>
                  <number_encoded_amino_acids>467</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMESNIISDMRLEPSIDTDKLSYEIFSILESKFLFGYDDQKLWVPKNLPSPVEDGKNDGVLTSTATENIQAIKNQRGKICILSIDGGGMRNILSGKALAYLEQALKVKSGNPEARIADYFDVAVGSGVGGIFTAMLFSTKDQNRPVFQAEDTWKLLEEQGRRIYPSKGSTSAGNGFLRRVLRGGATRSDASGLEKVMKEAFMDKKTGRSLTLKDTLKPVLIPCYDLSSTAPFLFSRADAFESESFDFRLWEVCRATSAEPGLFEPVCMKSVDGKTGCVAVDGGLAMSNPTAAAITHVLHNKQEFPFVRGVEDILVLSLGTGQLLEGSFQYEHVKKWKAKDWAKPMARISGDGAADMVDHSVAMAFGQCRSSNYVRIQANGSSFGRCGVNIDADPSPNNVKKLVGIADEMLKQKNVESLLFGGKKIAEQSNFQKLDWFAGELVQEHQRRSCRIAPTVAFKQHLTNQEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37863" e_stop="39277"/>
            <exon e_start="41568" e_stop="42001"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="0.996"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="37863" e_stop="39277" e_length="1415"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="39278" i_stop="41567" i_length="2290"/>
          </intron>
          <exon e_serial="2" e_score="0.959">
            <gDNA_exon_boundary e_start="41568" e_stop="42001" e_length="434"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37863" stop="38527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37865" stop="38594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37865" stop="38588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37870" stop="38427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37879" stop="38401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37880" stop="38611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37886" stop="38527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37917" stop="38653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37918" stop="38402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37994" stop="38585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38201" stop="38637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38233" stop="38924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38233" stop="38833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38281" stop="38781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38357" stop="38916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38454" stop="39031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38477" stop="39188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38477" stop="38813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38606" stop="39277"/>
              <exon start="41568" stop="41656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38892" stop="39277"/>
              <exon start="41568" stop="41954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39102" stop="39277"/>
              <exon start="41568" stop="42001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423747" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGAAAAGAGATATTCCCACCAACAAACACATATATACTGATCAAATTCCTTCCCCAAAATCACTTTTCAGATCAATTTTGAAGCATCTCTGAGGTAAAAGGAGATTGAAAAACTTCACGCTTGTGTAGGTAAAATACCTTTATATGGGTTGAAGGTTGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAGCAGATGGGTATTGAGGATATGGGAGAAATTAGGTGATTCCAATAAAGAGTCTTTTGAAATTTTTGGAGTTTTTTTTGAATTGGATTTGTTAAGAAATGGAGTCAAATATTATATCAGATATGCGGTTAGAACCGAGCATTGATACAGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTGGAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAACTTCTAGAGGAACAAGGTAGAAGAATTTATCCTTCAAAAGGGTCGACTTCTGCCGGAAATGGTTTTCTCCGGCGAGTTCTCCGAGGTGGCGCAACCCGTTCTGATGCTTCCGGTTTAGAGAAAGTGATGAAAGAAGCATTTATGGATAAAAAAACCGGTCGAAGCCTTACGTTAAAGGATACTCTTAAACCGGTTTTAATCCCCTGTTATGACCTTTCCAGTACTGCACCGTTTTTGTTCTCCCGAGCTGATGCTTTCGAATCGGAAAGCTTTGATTTCCGGTTATGGGAAGTTTGCCGGGCTACATCAGCTGAACCGGGACTCTTCGAACCGGTTTGTATGAAATCCGTCGATGGAAAAACCGGATGCGTGGCGGTTGACGGCGGTTTAGCAATGAGCAACCCGACGGCCGCCGCGATTACCCACGTTCTTCATAACAAACAGGAATTTCCTTTCGTTAGAGGTGTTGAGGACATTTTGGTTCTTTCACTTGGAACAGGGCAGCTTCTAGAAGGAAGCTTCCAATATGAACATGTTAAAAAATGGAAGGCTAAGGACTGGGCTAAGCCAATGGCCCGAATCTCCGGCGATGGTGCCGCCGATATGGTGGATCACTCCGTCGCCATGGCGTTTGGGCAATGTCGGAGTAGTAATTACGTCCGTATTCAG : GCTAATGGATCGAGCTTCGGTCGTTGTGGGGTGAACATAGATGCTGATCCAAGTCCTAACAATGTGAAAAAGCTTGTGGGAATTGCAGATGAAATGCTGAAACAGAAAAATGTAGAGTCCCTACTATTCGGTGGTAAGAAAATTGCAGAACAAAGCAATTTCCAGAAACTTGATTGGTTTGCTGGAGAACTTGTACAAGAGCATCAGAGGAGGAGTTGCAGGATAGCTCCCACTGTTGCATTTAAGCAACATCTCACAAATCAAGAAAAATAAATGAAAAGATCAAAAAAGAAAGATTTGGTAAGTTTTCTTTCTATCCCATCTTTCCCATTTTGTATGATTTGTCCACTGCCATCAACTTGTACTATATTAAATTTTAGTAAAATTTTATATAAATATACATATTTATATGAAATTGCTACACAAAGAAGTAA</gDNA_template>
            <first_frame> G  K  R  D  I  P  T  N  K  H  I  Y  T  D  Q  I  P  S  P  K  S  L  F  R  S  I  L  K  H  L  *  G  K  R  R  L  K  N  F  T  L  V  *  V  K  Y  L  Y  M  G  *  R  L  N  F  F  S  C  L  F  W  E  N  Q  Q  M  G  I  E  D  M  G  E  I  R  *  F  Q  *  R  V  F  *  N  F  W  S  F  F  *  I  G  F  V  K  K  W  S  Q  I  L  Y  Q  I  C  G  *  N  R  A  L  I  Q  I  S  *  V  T  R  F  S  L  F  *  K  A  N  S  Y  L  V  T  M  I  K  S  F  G  Y  Q  K  I  Y  R  L  R  L  K  M  A  K  T  T  A  F  *  P  P  Q  R  R  K  I  F  R  R  L  R  I  N  E  E  K  Y  V  S  S  A  L  M  V  V  E  C  E  I  Y  Y  Q  V  K  L  *  R  I  W  N  K  R  *  R  L  N  R  G  I  Q  K  L  E  S  P  I  I  S  T  L  L  L  V  P  A  L  E  E  F  S  R  R  C  Y  F  Q  R  R  I  K  T  V  L  F  S  K  L  K  I  H  G  N  F  *  R  N  K  V  E  E  F  I  L  Q  K  G  R  L  L  P  E  M  V  F  S  G  E  F  S  E  V  A  Q  P  V  L  M  L  P  V  *  R  K  *  *  K  K  H  L  W  I  K  K  P  V  E  A  L  R  *  R  I  L  L  N  R  F  *  S  P  V  M  T  F  P  V  L  H  R  F  C  S  P  E  L  M  L  S  N  R  K  A  L  I  S  G  Y  G  K  F  A  G  L  H  Q  L  N  R  D  S  S  N  R  F  V  *  N  P  S  M  E  K  P  D  A  W  R  L  T  A  V  *  Q  *  A  T  R  R  P  P  R  L  P  T  F  F  I  T  N  R  N  F  L  S  L  E  V  L  R  T  F  W  F  F  H  L  E  Q  G  S  F  *  K  E  A  S  N  M  N  M  L  K  N  G  R  L  R  T  G  L  S  Q  W  P  E  S  P  A  M  V  P  P  I  W  W  I  T  P  S  P  W  R  L  G  N  V  G  V  V  I  T  S  V  F  R :   L  M  D  R  A  S  V  V  V  G  *  T  *  M  L  I  Q  V  L  T  M  *  K  S  L  W  E  L  Q  M  K  C  *  N  R  K  M  *  S  P  Y  Y  S  V  V  R  K  L  Q  N  K  A  I  S  R  N  L  I  G  L  L  E  N  L  Y  K  S  I  R  G  G  V  A  G  *  L  P  L  L  H  L  S  N  I  S  Q  I  K  K  N  K  *  K  D  Q  K  R  K  I  W  *  V  F  F  L  S  H  L  S  H  F  V  *  F  V  H  C  H  Q  L  V  L  Y  *  I  L  V  K  F  Y  I  N  I  H  I  Y  M  K  L  L  H  K  E  V  </first_frame>
            <second_frame>  G  K  E  I  F  P  P  T  N  T  Y  I  L  I  K  F  L  P  Q  N  H  F  S  D  Q  F  *  S  I  S  E  V  K  G  D  *  K  T  S  R  L  C  R  *  N  T  F  I  W  V  E  G  *  I  F  S  A  V  C  F  G  K  I  S  R  W  V  L  R  I  W  E  K  L  G  D  S  N  K  E  S  F  E  I  F  G  V  F  F  E  L  D  L  L  R  N  G  V  K  Y  Y  I  R  Y  A  V  R  T  E  H  *  Y  R  *  A  K  L  R  D  F  L  Y  S  R  K  Q  I  L  I  W  L  R  *  S  K  A  L  G  T  K  K  F  T  V  S  G  *  R  W  Q  K  R  R  R  F  N  L  H  S  D  G  K  Y  S  G  D  *  E  S  T  R  K  N  M  Y  P  Q  H  *  W  W  W  N  A  K  Y  I  I  R  *  S  F  S  V  F  G  T  S  V  E  G  *  I  G  E  S  R  S  *  N  R  R  L  F  R  R  C  C  W  F  R  R  W  R  N  F  H  G  D  V  I  F  N  E  G  S  K  P  S  C  F  P  S  *  R  Y  M  E  T  S  R  G  T  R  *  K  N  L  S  F  K  R  V  D  F  C  R  K  W  F  S  P  A  S  S  P  R  W  R  N  P  F  *  C  F  R  F  R  E  S  D  E  R  S  I  Y  G  *  K  N  R  S  K  P  Y  V  K  G  Y  S  *  T  G  F  N  P  L  L  *  P  F  Q  Y  C  T  V  F  V  L  P  S  *  C  F  R  I  G  K  L  *  F  P  V  M  G  S  L  P  G  Y  I  S  *  T  G  T  L  R  T  G  L  Y  E  I  R  R  W  K  N  R  M  R  G  G  *  R  R  F  S  N  E  Q  P  D  G  R  R  D  Y  P  R  S  S  *  Q  T  G  I  S  F  R  *  R  C  *  G  H  F  G  S  F  T  W  N  R  A  A  S  R  R  K  L  P  I  *  T  C  *  K  M  E  G  *  G  L  G  *  A  N  G  P  N  L  R  R  W  C  R  R  Y  G  G  S  L  R  R  H  G  V  W  A  M  S  E  *  *  L  R  P  Y  S   : G  *  W  I  E  L  R  S  L  W  G  E  H  R  C  *  S  K  S  *  Q  C  E  K  A  C  G  N  C  R  *  N  A  E  T  E  K  C  R  V  P  T  I  R  W  *  E  N  C  R  T  K  Q  F  P  E  T  *  L  V  C  W  R  T  C  T  R  A  S  E  E  E  L  Q  D  S  S  H  C  C  I  *  A  T  S  H  K  S  R  K  I  N  E  K  I  K  K  E  R  F  G  K  F  S  F  Y  P  I  F  P  I  L  Y  D  L  S  T  A  I  N  L  Y  Y  I  K  F  *  *  N  F  I  *  I  Y  I  F  I  *  N  C  Y  T  K  K  * </second_frame>
            <third_frame>   E  K  R  Y  S  H  Q  Q  T  H  I  Y  *  S  N  S  F  P  K  I  T  F  Q  I  N  F  E  A  S  L  R  *  K  E  I  E  K  L  H  A  C  V  G  K  I  P  L  Y  G  L  K  V  E  F  F  Q  L  F  V  L  G  K  S  A  D  G  Y  *  G  Y  G  R  N  *  V  I  P  I  K  S  L  L  K  F  L  E  F  F  L  N  W  I  C  *  E  M  E  S  N  I  I  S  D  M  R  L  E  P  S  I  D  T  D  K  L  S  Y  E  I  F  S  I  L  E  S  K  F  L  F  G  Y  D  D  Q  K  L  W  V  P  K  N  L  P  S  P  V  E  D  G  K  N  D  G  V  L  T  S  T  A  T  E  N  I  Q  A  I  K  N  Q  R  G  K  I  C  I  L  S  I  D  G  G  G  M  R  N  I  L  S  G  K  A  L  A  Y  L  E  Q  A  L  K  V  K  S  G  N  P  E  A  R  I  A  D  Y  F  D  V  A  V  G  S  G  V  G  G  I  F  T  A  M  L  F  S  T  K  D  Q  N  R  P  V  F  Q  A  E  D  T  W  K  L  L  E  E  Q  G  R  R  I  Y  P  S  K  G  S  T  S  A  G  N  G  F  L  R  R  V  L  R  G  G  A  T  R  S  D  A  S  G  L  E  K  V  M  K  E  A  F  M  D  K  K  T  G  R  S  L  T  L  K  D  T  L  K  P  V  L  I  P  C  Y  D  L  S  S  T  A  P  F  L  F  S  R  A  D  A  F  E  S  E  S  F  D  F  R  L  W  E  V  C  R  A  T  S  A  E  P  G  L  F  E  P  V  C  M  K  S  V  D  G  K  T  G  C  V  A  V  D  G  G  L  A  M  S  N  P  T  A  A  A  I  T  H  V  L  H  N  K  Q  E  F  P  F  V  R  G  V  E  D  I  L  V  L  S  L  G  T  G  Q  L  L  E  G  S  F  Q  Y  E  H  V  K  K  W  K  A  K  D  W  A  K  P  M  A  R  I  S  G  D  G  A  A  D  M  V  D  H  S  V  A  M  A  F  G  Q  C  R  S  S  N  Y  V  R  I  Q  :  A  N  G  S  S  F  G  R  C  G  V  N  I  D  A  D  P  S  P  N  N  V  K  K  L  V  G  I  A  D  E  M  L  K  Q  K  N  V  E  S  L  L  F  G  G  K  K  I  A  E  Q  S  N  F  Q  K  L  D  W  F  A  G  E  L  V  Q  E  H  Q  R  R  S  C  R  I  A  P  T  V  A  F  K  Q  H  L  T  N  Q  E  K  *  M  K  R  S  K  K  K  D  L  V  S  F  L  S  I  P  S  F  P  F  C  M  I  C  P  L  P  S  T  C  T  I  L  N  F  S  K  I  L  Y  K  Y  T  Y  L  Y  E  I  A  T  Q  R  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38147" stop="39277"/>
                    <exon start="41568" stop="41840"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1401</number_coding_nucleotides>
                  <number_encoded_amino_acids>467</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMESNIISDMRLEPSIDTDKLSYEIFSILESKFLFGYDDQKLWVPKNLPSPVEDGKNDGVLTSTATENIQAIKNQRGKICILSIDGGGMRNILSGKALAYLEQALKVKSGNPEARIADYFDVAVGSGVGGIFTAMLFSTKDQNRPVFQAEDTWKLLEEQGRRIYPSKGSTSAGNGFLRRVLRGGATRSDASGLEKVMKEAFMDKKTGRSLTLKDTLKPVLIPCYDLSSTAPFLFSRADAFESESFDFRLWEVCRATSAEPGLFEPVCMKSVDGKTGCVAVDGGLAMSNPTAAAITHVLHNKQEFPFVRGVEDILVLSLGTGQLLEGSFQYEHVKKWKAKDWAKPMARISGDGAADMVDHSVAMAFGQCRSSNYVRIQANGSSFGRCGVNIDADPSPNNVKKLVGIADEMLKQKNVESLLFGGKKIAEQSNFQKLDWFAGELVQEHQRRSCRIAPTVAFKQHLTNQEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="41949" PGL_stop="41566"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41949" e_stop="41566"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="41949" e_stop="41566" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41949" stop="41566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422753" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACTAAAATTTAATATAGTACAAGTTGATGGCAGTGGACAAATCATACAAAATGGGAAAGATGGGATAGAAAGAAAACTTACCAAATCTTTCTTTTTTGATCTTTTCATTTATTTTTCTTGATTTGTGAGATGTTGCTTAAATGCAACAGTGGGAGCTATCCTGCAACTCCTCCTCTGATGCTCTTGTACAAGTTCTCCAGCAAACCAATCAAGTTTCTGGAAATTGCTTTGTTCTGCAATTTTCTTACCACCGAATAGTAGGGACTCTACATTTTTCTGTTTCAGCATTTCATCTGCAATTCCCACAAGCTTTTTCACATTGTTAGGACTTGGATCAGCATCTATGTTCACCCCACAACGACCGAAGCTCGATCCATTAGCCT</gDNA_template>
            <first_frame> Y  *  N  L  I  *  Y  K  L  M  A  V  D  K  S  Y  K  M  G  K  M  G  *  K  E  N  L  P  N  L  S  F  L  I  F  S  F  I  F  L  D  L  *  D  V  A  *  M  Q  Q  W  E  L  S  C  N  S  S  S  D  A  L  V  Q  V  L  Q  Q  T  N  Q  V  S  G  N  C  F  V  L  Q  F  S  Y  H  R  I  V  G  T  L  H  F  S  V  S  A  F  H  L  Q  F  P  Q  A  F  S  H  C  *  D  L  D  Q  H  L  C  S  P  H  N  D  R  S  S  I  H  *  P </first_frame>
            <second_frame>  T  K  I  *  Y  S  T  S  *  W  Q  W  T  N  H  T  K  W  E  R  W  D  R  K  K  T  Y  Q  I  F  L  F  *  S  F  H  L  F  F  L  I  C  E  M  L  L  K  C  N  S  G  S  Y  P  A  T  P  P  L  M  L  L  Y  K  F  S  S  K  P  I  K  F  L  E  I  A  L  F  C  N  F  L  T  T  E  *  *  G  L  Y  I  F  L  F  Q  H  F  I  C  N  S  H  K  L  F  H  I  V  R  T  W  I  S  I  Y  V  H  P  T  T  T  E  A  R  S  I  S   </second_frame>
            <third_frame>   L  K  F  N  I  V  Q  V  D  G  S  G  Q  I  I  Q  N  G  K  D  G  I  E  R  K  L  T  K  S  F  F  F  D  L  F  I  Y  F  S  *  F  V  R  C  C  L  N  A  T  V  G  A  I  L  Q  L  L  L  *  C  S  C  T  S  S  P  A  N  Q  S  S  F  W  K  L  L  C  S  A  I  F  L  P  P  N  S  R  D  S  T  F  F  C  F  S  I  S  S  A  I  P  T  S  F  F  T  L  L  G  L  G  S  A  S  M  F  T  P  Q  R  P  K  L  D  P  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41770" stop="41567"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSCTSSPANQSSFWKLLCSAIFLPPNSRDSTFFCFSISSAIPTSFFTLLGLGSASMFTPQRPKLDPLA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="48885" PGL_stop="48061"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48885" e_stop="48061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="48885" e_stop="48061" e_length="825"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48885" stop="48061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48885" stop="48161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48884" stop="48324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48802" stop="48638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484513" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACGAAGGACCTGGTCGTGGTGATGAGCAAGTTCCTTGGGGAGGCTATCAAGTAGCACGACGAACTTTACCAATACTCAGTAGGGTTGTCTCGCGGTACCCTGATTCCCTCGTGAACTTCAGGGTAGCAAGTAGCATACTTCAGTCAGTGTATTTGGAAATATTGGCAGAGTTAGTCTACTTTCTTGATAATCTTACAATAGTGAACTTGTCAAAGGATCAGTTCAATGTTGCTAGGCAACATATCTGGGACCTAAAGTTAAGTGGCATTGAAATAGGCTGGCTTGAAAACCGTTTACTGCATATCGATGAAGTATTTAGCATGGAAAGTTTACTGCAACGGCGACAAGCACTCACACGTAGAATGGAGGAGACATTTAAGCAGCTGGATGGGGAACTTGGATGTATAGACAAGGAGCTTCATGAACTATCTCTAAAGGTTGGCCCTAATTCCCCTATGAGATTGCAATCTGTCTTGGAGGGTTTGTTGTAGTTTCCAGTGATGTTATCCTTTGTATTTGACTACATGATAAAGAGAAAAAGCCGGACATAGTCCATTATCTTTGGGCGGAGGCTCAAAATGATCGTATTTCTTTCACACGAGCAACCAATTTGTTAGAAAATGACGACTATTGATGCTCCATGCAAGAGAGATACGATCATTTTGATCTCAAGTTCAAAGAATATGGACTATTTTGGGTTTTTTCTGTAATGATAGGAACTCTTACGATTAGAGGTGAAGTCGAGTTTTTCAGTTTATGGATTCAGGACCACATATTAAATGAAATGATTAACACAAATATAAAGTTTGGGACAAAGTTAATG</gDNA_template>
            <first_frame> L  R  R  T  W  S  W  *  *  A  S  S  L  G  R  L  S  S  S  T  T  N  F  T  N  T  Q  *  G  C  L  A  V  P  *  F  P  R  E  L  Q  G  S  K  *  H  T  S  V  S  V  F  G  N  I  G  R  V  S  L  L  S  *  *  S  Y  N  S  E  L  V  K  G  S  V  Q  C  C  *  A  T  Y  L  G  P  K  V  K  W  H  *  N  R  L  A  *  K  P  F  T  A  Y  R  *  S  I  *  H  G  K  F  T  A  T  A  T  S  T  H  T  *  N  G  G  D  I  *  A  A  G  W  G  T  W  M  Y  R  Q  G  A  S  *  T  I  S  K  G  W  P  *  F  P  Y  E  I  A  I  C  L  G  G  F  V  V  V  S  S  D  V  I  L  C  I  *  L  H  D  K  E  K  K  P  D  I  V  H  Y  L  W  A  E  A  Q  N  D  R  I  S  F  T  R  A  T  N  L  L  E  N  D  D  Y  *  C  S  M  Q  E  R  Y  D  H  F  D  L  K  F  K  E  Y  G  L  F  W  V  F  S  V  M  I  G  T  L  T  I  R  G  E  V  E  F  F  S  L  W  I  Q  D  H  I  L  N  E  M  I  N  T  N  I  K  F  G  T  K  L  M </first_frame>
            <second_frame>  Y  E  G  P  G  R  G  D  E  Q  V  P  W  G  G  Y  Q  V  A  R  R  T  L  P  I  L  S  R  V  V  S  R  Y  P  D  S  L  V  N  F  R  V  A  S  S  I  L  Q  S  V  Y  L  E  I  L  A  E  L  V  Y  F  L  D  N  L  T  I  V  N  L  S  K  D  Q  F  N  V  A  R  Q  H  I  W  D  L  K  L  S  G  I  E  I  G  W  L  E  N  R  L  L  H  I  D  E  V  F  S  M  E  S  L  L  Q  R  R  Q  A  L  T  R  R  M  E  E  T  F  K  Q  L  D  G  E  L  G  C  I  D  K  E  L  H  E  L  S  L  K  V  G  P  N  S  P  M  R  L  Q  S  V  L  E  G  L  L  *  F  P  V  M  L  S  F  V  F  D  Y  M  I  K  R  K  S  R  T  *  S  I  I  F  G  R  R  L  K  M  I  V  F  L  S  H  E  Q  P  I  C  *  K  M  T  T  I  D  A  P  C  K  R  D  T  I  I  L  I  S  S  S  K  N  M  D  Y  F  G  F  F  L  *  *  *  E  L  L  R  L  E  V  K  S  S  F  S  V  Y  G  F  R  T  T  Y  *  M  K  *  L  T  Q  I  *  S  L  G  Q  S  *   </second_frame>
            <third_frame>   T  K  D  L  V  V  V  M  S  K  F  L  G  E  A  I  K  *  H  D  E  L  Y  Q  Y  S  V  G  L  S  R  G  T  L  I  P  S  *  T  S  G  *  Q  V  A  Y  F  S  Q  C  I  W  K  Y  W  Q  S  *  S  T  F  L  I  I  L  Q  *  *  T  C  Q  R  I  S  S  M  L  L  G  N  I  S  G  T  *  S  *  V  A  L  K  *  A  G  L  K  T  V  Y  C  I  S  M  K  Y  L  A  W  K  V  Y  C  N  G  D  K  H  S  H  V  E  W  R  R  H  L  S  S  W  M  G  N  L  D  V  *  T  R  S  F  M  N  Y  L  *  R  L  A  L  I  P  L  *  D  C  N  L  S  W  R  V  C  C  S  F  Q  *  C  Y  P  L  Y  L  T  T  *  *  R  E  K  A  G  H  S  P  L  S  L  G  G  G  S  K  *  S  Y  F  F  H  T  S  N  Q  F  V  R  K  *  R  L  L  M  L  H  A  R  E  I  R  S  F  *  S  Q  V  Q  R  I  W  T  I  L  G  F  F  C  N  D  R  N  S  Y  D  *  R  *  S  R  V  F  Q  F  M  D  S  G  P  H  I  K  *  N  D  *  H  K  Y  K  V  W  D  K  V  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48884" stop="48393"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YEGPGRGDEQVPWGGYQVARRTLPILSRVVSRYPDSLVNFRVASSILQSVYLEILAELVYFLDNLTIVNLSKDQFNVARQHIWDLKLSGIEIGWLENRLLHIDEVFSMESLLQRRQALTRRMEETFKQLDGELGCIDKELHELSLKVGPNSPMRLQSVLEGLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="49656" PGL_stop="48990"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49656" e_stop="49517"/>
            <exon e_start="49036" e_stop="48990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="0.921"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="49656" e_stop="49517" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49516" i_stop="49037" i_length="480"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="49036" e_stop="48990" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49656" stop="49517"/>
              <exon start="49036" stop="48990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACACTGTAAGCACCCACACTAGAGATGAGGACTTGTATGAACTATTCAAGGATTTTGACTTTCCAGACTCTACAAACACTAGTCTCGATACTATAGCTTTGGATTTGGGCAGTGATTGGTTCAGATCAACGCTACAAG : ATTTCGGGGAATGTCTTGAAGAGCAAGAAGAGACTGTTACTCCCAGT</gDNA_template>
            <first_frame> R  H  C  K  H  P  H  *  R  *  G  L  V  *  T  I  Q  G  F  *  L  S  R  L  Y  K  H  *  S  R  Y  Y  S  F  G  F  G  Q  *  L  V  Q  I  N  A  T  R :   F  R  G  M  S  *  R  A  R  R  D  C  Y  S  Q  </first_frame>
            <second_frame>  D  T  V  S  T  H  T  R  D  E  D  L  Y  E  L  F  K  D  F  D  F  P  D  S  T  N  T  S  L  D  T  I  A  L  D  L  G  S  D  W  F  R  S  T  L  Q   : D  F  G  E  C  L  E  E  Q  E  E  T  V  T  P  S </second_frame>
            <third_frame>   T  L  *  A  P  T  L  E  M  R  T  C  M  N  Y  S  R  I  L  T  F  Q  T  L  Q  T  L  V  S  I  L  *  L  W  I  W  A  V  I  G  S  D  Q  R  Y  K  :  I  S  G  N  V  L  K  S  K  K  R  L  L  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0141A12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="53700" PGL_stop="51432"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53700" e_stop="53191"/>
            <exon e_start="53004" e_stop="52909"/>
            <exon e_start="51603" e_stop="51547"/>
            <exon e_start="51466" e_stop="51432"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.911" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.839" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.742" e_score="0.982"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53700" e_stop="53191" e_length="510"/>
          </exon>
          <intron i_serial="1" don_prob="0.911" acc_prob="0.978">
            <gDNA_intron_boundary i_start="53190" i_stop="53005" i_length="186"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53004" e_stop="52909" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.839" acc_prob="0.993">
            <gDNA_intron_boundary i_start="52908" i_stop="51604" i_length="1305"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="51603" e_stop="51547" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.742">
            <gDNA_intron_boundary i_start="51546" i_stop="51467" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51466" e_stop="51432" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53700" stop="53191"/>
              <exon start="53004" stop="52909"/>
              <exon start="51603" stop="51547"/>
              <exon start="51466" stop="51432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332437" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGATTGTCTTTAGTGGTTCCCTTTAGCAAGTTGTATACTTTTTTTGTGCTTTGATTATGGTTGATCAATTGCGGTTTTCACAGCAGAAATACCTAAATCATATGCCATTTAAAGGTTCAAGATTCTAGCTTTATTTGTTTTTATACAAAAAAAAGGGGACATTTTTCACTCTTGATTTATAGATTAATTGTTTATGTACTGTCTTTGCTACTGCTTTATGATTTCTTTACTATTACTGTATTTTCCTTTCTTACTGATTTTGATGTGCTTCATTTGATAGTTGGAAACAACCTCTCTACCTTCATAGGGGCAAGGCCGTGATGTGGGATTACACGGGATATGTTGTTGACGTTATTGATTTATAGATTGTTTTGTTTTTTGGGTGGGTGATTTGTCAGGTGATGATGATCTGTGTAGGGAAATATGGAAGGCCTGTTCTGGTTCATTGTTGGATGTTTCAAAGGCTGGGGAGAGAGTATACTACTTTCCAAGACTTCATGTGGAGCAG : CTGGAGCAATCATCCAACCAGGAGCTGATTGAAAAACTACAATTGTCCAACTTACCTCCAAAGATCCTTTGTCGTGTTCTTCATATTCGTCTTCTG : GTTGAACATGAGACGGAAGAGGTTTATGCTGAGACCATATTAATTCCAAATCAAGAT : CAAAATGAGCCAACAGCTGCGGATTTTAGTCCTCT</gDNA_template>
            <first_frame> K  D  C  L  *  W  F  P  L  A  S  C  I  L  F  L  C  F  D  Y  G  *  S  I  A  V  F  T  A  E  I  P  K  S  Y  A  I  *  R  F  K  I  L  A  L  F  V  F  I  Q  K  K  G  D  I  F  H  S  *  F  I  D  *  L  F  M  Y  C  L  C  Y  C  F  M  I  S  L  L  L  L  Y  F  P  F  L  L  I  L  M  C  F  I  *  *  L  E  T  T  S  L  P  S  *  G  Q  G  R  D  V  G  L  H  G  I  C  C  *  R  Y  *  F  I  D  C  F  V  F  W  V  G  D  L  S  G  D  D  D  L  C  R  E  I  W  K  A  C  S  G  S  L  L  D  V  S  K  A  G  E  R  V  Y  Y  F  P  R  L  H  V  E  Q  :  L  E  Q  S  S  N  Q  E  L  I  E  K  L  Q  L  S  N  L  P  P  K  I  L  C  R  V  L  H  I  R  L  L  :  V  E  H  E  T  E  E  V  Y  A  E  T  I  L  I  P  N  Q  D  :  Q  N  E  P  T  A  A  D  F  S  P   </first_frame>
            <second_frame>  K  I  V  F  S  G  S  L  *  Q  V  V  Y  F  F  C  A  L  I  M  V  D  Q  L  R  F  S  Q  Q  K  Y  L  N  H  M  P  F  K  G  S  R  F  *  L  Y  L  F  L  Y  K  K  K  G  T  F  F  T  L  D  L  *  I  N  C  L  C  T  V  F  A  T  A  L  *  F  L  Y  Y  Y  C  I  F  L  S  Y  *  F  *  C  A  S  F  D  S  W  K  Q  P  L  Y  L  H  R  G  K  A  V  M  W  D  Y  T  G  Y  V  V  D  V  I  D  L  *  I  V  L  F  F  G  W  V  I  C  Q  V  M  M  I  C  V  G  K  Y  G  R  P  V  L  V  H  C  W  M  F  Q  R  L  G  R  E  Y  T  T  F  Q  D  F  M  W  S  S :   W  S  N  H  P  T  R  S  *  L  K  N  Y  N  C  P  T  Y  L  Q  R  S  F  V  V  F  F  I  F  V  F  W :   L  N  M  R  R  K  R  F  M  L  R  P  Y  *  F  Q  I  K  I :   K  M  S  Q  Q  L  R  I  L  V  L  </second_frame>
            <third_frame>   R  L  S  L  V  V  P  F  S  K  L  Y  T  F  F  V  L  *  L  W  L  I  N  C  G  F  H  S  R  N  T  *  I  I  C  H  L  K  V  Q  D  S  S  F  I  C  F  Y  T  K  K  R  G  H  F  S  L  L  I  Y  R  L  I  V  Y  V  L  S  L  L  L  L  Y  D  F  F  T  I  T  V  F  S  F  L  T  D  F  D  V  L  H  L  I  V  G  N  N  L  S  T  F  I  G  A  R  P  *  C  G  I  T  R  D  M  L  L  T  L  L  I  Y  R  L  F  C  F  L  G  G  *  F  V  R  *  *  *  S  V  *  G  N  M  E  G  L  F  W  F  I  V  G  C  F  K  G  W  G  E  S  I  L  L  S  K  T  S  C  G  A   : A  G  A  I  I  Q  P  G  A  D  *  K  T  T  I  V  Q  L  T  S  K  D  P  L  S  C  S  S  Y  S  S  S   : G  *  T  *  D  G  R  G  L  C  *  D  H  I  N  S  K  S  R   : S  K  *  A  N  S  C  G  F  *  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53340" stop="53191"/>
                    <exon start="53004" stop="52909"/>
                    <exon start="51603" stop="51547"/>
                    <exon start="51466" stop="51434"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIDCFVFWVGDLSGDDDLCREIWKACSGSLLDVSKAGERVYYFPRLHVEQLEQSSNQELIEKLQLSNLPPKILCRVLHIRLLVEHETEEVYAETILIPNQDQNEPTAADFSP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53602" stop="53378"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IICHLKVQDSSFICFYTKKRGHFSLLIYRLIVYVLSLLLLYDFFTITVFSFLTDFDVLHLIVGNNLSTFIGARP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="66989" PGL_stop="68897"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66989" e_stop="67260"/>
            <exon e_start="67373" e_stop="67475"/>
            <exon e_start="67563" e_stop="67851"/>
            <exon e_start="67943" e_stop="68897"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.931" e_score="1.000"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66989" e_stop="67260" e_length="272"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="67261" i_stop="67372" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67373" e_stop="67475" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67476" i_stop="67562" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67563" e_stop="67851" e_length="289"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.931">
            <gDNA_intron_boundary i_start="67852" i_stop="67942" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="0.935">
            <gDNA_exon_boundary e_start="67943" e_stop="68897" e_length="955"/>
          </exon>
        </exon-intron_info>
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            <referenceDNA id="SGN-E733736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67167" stop="67260"/>
              <exon start="67373" stop="67475"/>
              <exon start="67563" stop="67851"/>
              <exon start="67943" stop="68154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67209" stop="67260"/>
              <exon start="67373" stop="67475"/>
              <exon start="67563" stop="67851"/>
              <exon start="67943" stop="68176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615826" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67247" stop="67260"/>
              <exon start="67373" stop="67475"/>
              <exon start="67563" stop="67851"/>
              <exon start="67943" stop="68154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67251" stop="67260"/>
              <exon start="67373" stop="67475"/>
              <exon start="67563" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67373" stop="67475"/>
              <exon start="67563" stop="67851"/>
              <exon start="67943" stop="68154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67377" stop="67475"/>
              <exon start="67563" stop="67657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67389" stop="67475"/>
              <exon start="67563" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67389" stop="67475"/>
              <exon start="67563" stop="67770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67408" stop="67475"/>
              <exon start="67563" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67409" stop="67475"/>
              <exon start="67563" stop="67851"/>
              <exon start="67943" stop="68136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67414" stop="67475"/>
              <exon start="67563" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67414" stop="67475"/>
              <exon start="67563" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67414" stop="67475"/>
              <exon start="67563" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67415" stop="67475"/>
              <exon start="67563" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67430" stop="67475"/>
              <exon start="67563" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67453" stop="67475"/>
              <exon start="67563" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67465" stop="67475"/>
              <exon start="67563" stop="67851"/>
              <exon start="67943" stop="68339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67473" stop="67475"/>
              <exon start="67563" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67565" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67566" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67566" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67579" stop="67851"/>
              <exon start="67943" stop="68184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67595" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403043" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67597" stop="67851"/>
              <exon start="67943" stop="68154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67604" stop="67851"/>
              <exon start="67943" stop="68264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67607" stop="67851"/>
              <exon start="67943" stop="68264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67627" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67631" stop="67851"/>
              <exon start="67943" stop="68292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67851"/>
              <exon start="67943" stop="68405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67644" stop="67851"/>
              <exon start="67943" stop="68204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294024" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67644" stop="67851"/>
              <exon start="67943" stop="68187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319537" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67665" stop="67851"/>
              <exon start="67943" stop="68206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67667" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401126" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67667" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67670" stop="67851"/>
              <exon start="67943" stop="68319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67674" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67675" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67675" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67719" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67723" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67729" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67730" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67731" stop="67851"/>
              <exon start="67943" stop="68156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298790" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67769" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67769" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67770" stop="67851"/>
              <exon start="67943" stop="68158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67772" stop="67851"/>
              <exon start="67943" stop="68314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67796" stop="67851"/>
              <exon start="67943" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67839" stop="67851"/>
              <exon start="67943" stop="68333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67970" stop="68189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68028" stop="68330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68195" stop="68408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68309" stop="68897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCAATTTTTTTTCATTCTCATATCCAAACTTTTTTTTGTACATCTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGG : AGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTT : CCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATG : GTCGTCTTGCATTGTTGGCATTTGTGGGATTTTGTGTACAACAATCAGCATATCCAGGAACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGGGATGTTATTATCCCTAAAGGCATTTTCCCTAATTAAATTGTACTATTTATCATATAGTATATTAGCCAAAAACACCTTGTAAAACTCTCCCATGTACTAATAGATTTCTAATGGAATGGACTTTCTGTGTATCCTTAGTCTAGTAGTTGTTGTTTGGTAAAGAGGTTTAAATATTGGTATAGATGTGGTGTGGTGCTCTAGTAGTTCTCTGGATCTTCTTATATGAAATACTGGCTCCGACACTGAGAGGAACATCTAGTTATTCTCAAATACTTGGATTTTTTTTTTTATATTCGAAGCGATATCATAAAAAGAAAATCACTTTGGTGTATTTTGGCACATGAAACAGACTCAAATATTATTGGTACTTCACAAATATACAAAGTGTCACCAAACAAGAATAATGTTCATCCTCACACTTTTCTCTCTAAGGCTCAACTTTGCCCATGGACTACAACAAATGCAAAGAATAGATGCAGGCACATCGTGCATTACGTTAATGAATACAACATTATAGATGCCAAGCATCAGCTAACTACACTAGCTGGTGAAAGGAAACTGGCATGCAGAGGAACCTTGTTCGAAGCAACAATCTCGTTGCAACATCCCGCTCTAGCTCCATCAACGACTAGATGGATGTGTCCTGGAGTAGAGTTTTCAGTAGGAACCAGTTCCCTAGCTGCAACTGTTTTGAGTCGAAGTCGTTCTGCCCTTGAGCCTATTACTTGCCCCAGAACAGATGCTCCAATGGTAAACGCCATAGCCGCTTTAGGCATCAAAATGGACTTCCTCAGAATGGCTATGAATGGCACAGCTGCATGTACAGCTGCAAACCA</gDNA_template>
            <first_frame> T  N  F  F  S  F  S  Y  P  N  F  F  L  Y  I  F  *  L  P  K  K  K  E  E  E  D  M  A  S  N  T  L  M  S  C  G  I  P  A  V  C  P  S  F  L  S  S  T  K  S  K  F  A  A  A  M  P  V  S  V  G  A  T  N  S  M  S  R  F  S  M  S  A  D  W  M  P  G  Q  P  R  P  S  Y  L  D  G  S  A  P  G :   D  F  G  F  D  P  L  G  L  G  E  V  P  A  N  L  E  R  Y  K  E  S  E  L  I  H  C  R  W  A  M  L  A  V  :  P  G  I  I  V  P  E  A  L  G  L  G  N  W  V  K  A  Q  E  W  A  A  I  P  G  G  Q  A  T  Y  L  G  Q  P  V  P  W  G  T  L  P  T  I  L  A  I  E  F  L  A  I  A  F  V  E  H  Q  R  S  M  E  K  D  S  E  K  K  K  Y  P  G  G  A  F  D  P  L  G  Y  S  K  D  P  A  K  F  E  E  L  K  V  K  E  I  K  N   : G  R  L  A  L  L  A  F  V  G  F  C  V  Q  Q  S  A  Y  P  G  T  G  P  L  E  N  L  A  T  H  L  A  D  P  W  H  N  N  I  G  D  V  I  I  P  K  G  I  F  P  N  *  I  V  L  F  I  I  *  Y  I  S  Q  K  H  L  V  K  L  S  H  V  L  I  D  F  *  W  N  G  L  S  V  Y  P  *  S  S  S  C  C  L  V  K  R  F  K  Y  W  Y  R  C  G  V  V  L  *  *  F  S  G  S  S  Y  M  K  Y  W  L  R  H  *  E  E  H  L  V  I  L  K  Y  L  D  F  F  F  Y  I  R  S  D  I  I  K  R  K  S  L  W  C  I  L  A  H  E  T  D  S  N  I  I  G  T  S  Q  I  Y  K  V  S  P  N  K  N  N  V  H  P  H  T  F  L  S  K  A  Q  L  C  P  W  T  T  T  N  A  K  N  R  C  R  H  I  V  H  Y  V  N  E  Y  N  I  I  D  A  K  H  Q  L  T  T  L  A  G  E  R  K  L  A  C  R  G  T  L  F  E  A  T  I  S  L  Q  H  P  A  L  A  P  S  T  T  R  W  M  C  P  G  V  E  F  S  V  G  T  S  S  L  A  A  T  V  L  S  R  S  R  S  A  L  E  P  I  T  C  P  R  T  D  A  P  M  V  N  A  I  A  A  L  G  I  K  M  D  F  L  R  M  A  M  N  G  T  A  A  C  T  A  A  N   </first_frame>
            <second_frame>  P  I  F  F  H  S  H  I  Q  T  F  F  C  T  S  F  N  Y  Q  K  K  K  R  K  K  I  W  L  L  I  H  *  *  V  V  E  F  Q  L  F  A  P  L  S  S  L  L  P  S  P  N  S  P  P  R  C  R  C  P  L  E  L  P  T  P  C  L  G  S  P  C  Q  L  I  G  C  P  G  S  P  V  H  L  T  S  T  A  Q  P  P   : E  I  L  D  L  I  H  L  V  *  E  K  Y  L  Q  I  W  K  D  T  K  N  L  N  L  F  I  A  D  G  L  C  L  L  F :   P  E  S  *  Y  Q  R  H  W  A  *  V  I  G  S  R  P  K  N  G  Q  P  F  L  V  D  K  L  H  I  W  A  S  L  F  H  G  E  H  F  L  L  F  W  L  L  N  F  *  P  *  L  L  *  N  T  K  G  V  W  K  K  I  Q  K  R  R  S  T  L  V  G  L  L  T  H  W  A  T  L  K  T  L  L  N  L  K  N  S  K  S  R  K  S  R  M  :  V  V  L  H  C  W  H  L  W  D  F  V  Y  N  N  Q  H  I  Q  E  Q  D  H  W  R  T  W  Q  L  T  W  L  T  H  G  T  T  T  L  G  M  L  L  S  L  K  A  F  S  L  I  K  L  Y  Y  L  S  Y  S  I  L  A  K  N  T  L  *  N  S  P  M  Y  *  *  I  S  N  G  M  D  F  L  C  I  L  S  L  V  V  V  V  W  *  R  G  L  N  I  G  I  D  V  V  W  C  S  S  S  S  L  D  L  L  I  *  N  T  G  S  D  T  E  R  N  I  *  L  F  S  N  T  W  I  F  F  F  I  F  E  A  I  S  *  K  E  N  H  F  G  V  F  W  H  M  K  Q  T  Q  I  L  L  V  L  H  K  Y  T  K  C  H  Q  T  R  I  M  F  I  L  T  L  F  S  L  R  L  N  F  A  H  G  L  Q  Q  M  Q  R  I  D  A  G  T  S  C  I  T  L  M  N  T  T  L  *  M  P  S  I  S  *  L  H  *  L  V  K  G  N  W  H  A  E  E  P  C  S  K  Q  Q  S  R  C  N  I  P  L  *  L  H  Q  R  L  D  G  C  V  L  E  *  S  F  Q  *  E  P  V  P  *  L  Q  L  F  *  V  E  V  V  L  P  L  S  L  L  L  A  P  E  Q  M  L  Q  W  *  T  P  *  P  L  *  A  S  K  W  T  S  S  E  W  L  *  M  A  Q  L  H  V  Q  L  Q  T  </second_frame>
            <third_frame>   Q  F  F  F  I  L  I  S  K  L  F  F  V  H  L  L  I  T  K  K  K  R  G  R  R  Y  G  F  *  Y  I  D  E  L  W  N  S  S  C  L  P  L  F  P  L  F  Y  Q  V  Q  I  R  R  R  D  A  G  V  R  W  S  Y  Q  L  H  V  S  V  L  H  V  S  *  L  D  A  R  A  A  P  S  I  L  P  R  R  L  S  P  R  :  R  F  W  I  *  S  T  W  F  R  R  S  T  C  K  F  G  K  I  Q  R  I  *  T  Y  S  L  Q  M  G  Y  A  C  C   : S  R  N  H  S  T  R  G  I  G  L  R  *  L  G  Q  G  P  R  M  G  S  H  S  W  W  T  S  Y  I  F  G  P  A  C  S  M  G  N  T  S  Y  Y  F  G  Y  *  I  S  S  H  S  F  C  R  T  P  K  E  Y  G  K  R  F  R  K  E  E  V  P  W  W  G  F  *  P  I  G  L  L  *  R  P  C  *  I  *  R  T  Q  S  Q  G  N  Q  E  W :   S  S  C  I  V  G  I  C  G  I  L  C  T  T  I  S  I  S  R  N  R  T  I  G  E  L  G  N  S  L  G  *  P  M  A  Q  Q  H  W  G  C  Y  Y  P  *  R  H  F  P  *  L  N  C  T  I  Y  H  I  V  Y  *  P  K  T  P  C  K  T  L  P  C  T  N  R  F  L  M  E  W  T  F  C  V  S  L  V  *  *  L  L  F  G  K  E  V  *  I  L  V  *  M  W  C  G  A  L  V  V  L  W  I  F  L  Y  E  I  L  A  P  T  L  R  G  T  S  S  Y  S  Q  I  L  G  F  F  F  L  Y  S  K  R  Y  H  K  K  K  I  T  L  V  Y  F  G  T  *  N  R  L  K  Y  Y  W  Y  F  T  N  I  Q  S  V  T  K  Q  E  *  C  S  S  S  H  F  S  L  *  G  S  T  L  P  M  D  Y  N  K  C  K  E  *  M  Q  A  H  R  A  L  R  *  *  I  Q  H  Y  R  C  Q  A  S  A  N  Y  T  S  W  *  K  E  T  G  M  Q  R  N  L  V  R  S  N  N  L  V  A  T  S  R  S  S  S  I  N  D  *  M  D  V  S  W  S  R  V  F  S  R  N  Q  F  P  S  C  N  C  F  E  S  K  S  F  C  P  *  A  Y  Y  L  P  Q  N  R  C  S  N  G  K  R  H  S  R  F  R  H  Q  N  G  L  P  Q  N  G  Y  E  W  H  S  C  M  Y  S  C  K  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67040" stop="67260"/>
                    <exon start="67373" stop="67475"/>
                    <exon start="67563" stop="67851"/>
                    <exon start="67943" stop="68097"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPKKKEEEDMASNTLMSCGIPAVCPSFLSSTKSKFAAAMPVSVGATNSMSRFSMSADWMPGQPRPSYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPKGIFPN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68308" stop="68895"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEHLVILKYLDFFFYIRSDIIKRKSLWCILAHETDSNIIGTSQIYKVSPNKNNVHPHTFLSKAQLCPWTTTNAKNRCRHIVHYVNEYNIIDAKHQLTTLAGERKLACRGTLFEATISLQHPALAPSTTRWMCPGVEFSVGTSSLAATVLSRSRSALEPITCPRTDAPMVNAIAALGIKMDFLRMAMNGTAACTAAN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="67033" e_stop="67866"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="67033" e_stop="67866" e_length="834"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67033" stop="67866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727236" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTAATTACCAAAAAAAAAAGAGGAAGAAGATATGGCTTCTAATACATTGATGAGTTGTGGAATTCCAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGGTAAGTAGTACTACTTCCTTCGTTTCATTTTATGTGATATGATGTATGTATGATCTCATACGATATTTAAGTTGTTAGTATATTAAAGTTGGATAACTTAATATAAATGCAGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTGTAAGCTTCTTTTTCCTTACCATAACATATATACGTTATATATTTTGAACATTCTTAACGAAATTTGTTTCTTCGCAATTTTTGTAGCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAGATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTTGACCCATTGGGCTACTCTAAAGACCCTGCTAAATTTGAAGAACTCAAAGTCAAGGAAATCAAGAATGGTTAGAATATTAACT</gDNA_template>
            <first_frame> L  L  I  T  K  K  K  R  G  R  R  Y  G  F  *  Y  I  D  E  L  W  N  S  S  C  L  P  L  F  P  L  F  Y  Q  V  Q  I  R  R  R  D  A  G  V  R  W  S  Y  Q  L  H  V  S  V  L  H  V  S  *  L  D  A  R  A  A  P  S  I  L  P  R  R  L  S  P  R  V  S  S  T  T  S  F  V  S  F  Y  V  I  *  C  M  Y  D  L  I  R  Y  L  S  C  *  Y  I  K  V  G  *  L  N  I  N  A  E  I  L  D  L  I  H  L  V  *  E  K  Y  L  Q  I  W  K  D  T  K  N  L  N  L  F  I  A  D  G  L  C  L  L  L  *  A  S  F  S  L  P  *  H  I  Y  V  I  Y  F  E  H  S  *  R  N  L  F  L  R  N  F  C  S  P  E  S  *  Y  Q  R  H  W  A  *  V  I  G  S  R  P  K  N  G  Q  P  F  L  V  D  K  L  H  I  W  A  S  L  F  H  G  E  H  F  L  L  F  W  L  L  N  F  *  P  *  L  L  *  N  T  K  G  V  W  K  K  I  Q  K  R  R  S  T  L  V  G  L  L  T  H  W  A  T  L  K  T  L  L  N  L  K  N  S  K  S  R  K  S  R  M  V  R  I  L  T </first_frame>
            <second_frame>  F  *  L  P  K  K  K  E  E  E  D  M  A  S  N  T  L  M  S  C  G  I  P  A  V  C  P  S  F  L  S  S  T  K  S  K  F  A  A  A  M  P  V  S  V  G  A  T  N  S  M  S  R  F  S  M  S  A  D  W  M  P  G  Q  P  R  P  S  Y  L  D  G  S  A  P  G  *  V  V  L  L  P  S  F  H  F  M  *  Y  D  V  C  M  I  S  Y  D  I  *  V  V  S  I  L  K  L  D  N  L  I  *  M  Q  R  F  W  I  *  S  T  W  F  R  R  S  T  C  K  F  G  K  I  Q  R  I  *  T  Y  S  L  Q  M  G  Y  A  C  C  C  K  L  L  F  P  Y  H  N  I  Y  T  L  Y  I  L  N  I  L  N  E  I  C  F  F  A  I  F  V  A  R  N  H  S  T  R  G  I  G  L  R  *  L  G  Q  G  P  R  M  G  S  H  S  W  W  T  S  Y  I  F  G  P  A  C  S  M  G  N  T  S  Y  Y  F  G  Y  *  I  S  S  H  S  F  C  R  T  P  K  E  Y  G  K  R  F  R  K  E  E  V  P  W  W  G  F  *  P  I  G  L  L  *  R  P  C  *  I  *  R  T  Q  S  Q  G  N  Q  E  W  L  E  Y  *   </second_frame>
            <third_frame>   F  N  Y  Q  K  K  K  R  K  K  I  W  L  L  I  H  *  *  V  V  E  F  Q  L  F  A  P  L  S  S  L  L  P  S  P  N  S  P  P  R  C  R  C  P  L  E  L  P  T  P  C  L  G  S  P  C  Q  L  I  G  C  P  G  S  P  V  H  L  T  S  T  A  Q  P  P  G  K  *  Y  Y  F  L  R  F  I  L  C  D  M  M  Y  V  *  S  H  T  I  F  K  L  L  V  Y  *  S  W  I  T  *  Y  K  C  R  D  F  G  F  D  P  L  G  L  G  E  V  P  A  N  L  E  R  Y  K  E  S  E  L  I  H  C  R  W  A  M  L  A  V  V  S  F  F  F  L  T  I  T  Y  I  R  Y  I  F  *  T  F  L  T  K  F  V  S  S  Q  F  L  *  P  G  I  I  V  P  E  A  L  G  L  G  N  W  V  K  A  Q  E  W  A  A  I  P  G  G  Q  A  T  Y  L  G  Q  P  V  P  W  G  T  L  P  T  I  L  A  I  E  F  L  A  I  A  F  V  E  H  Q  R  S  M  E  K  D  S  E  K  K  K  Y  P  G  G  A  F  D  P  L  G  Y  S  K  D  P  A  K  F  E  E  L  K  V  K  E  I  K  N  G  *  N  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67563" stop="67856"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67040" stop="67264"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPKKKEEEDMASNTLMSCGIPAVCPSFLSSTKSKFAAAMPVSVGATNSMSRFSMSADWMPGQPRPSYLDGSAPG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="71302" PGL_stop="68987"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70078" e_stop="69939"/>
            <exon e_start="69747" e_stop="69466"/>
            <exon e_start="69212" e_stop="68987"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.962" e_score="0.986"/>
          <exon-intron don_prob="0.991" acc_prob="0.972" e_score="0.975"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="70078" e_stop="69939" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.962">
            <gDNA_intron_boundary i_start="69938" i_stop="69748" i_length="191"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="69747" e_stop="69466" e_length="282"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.972">
            <gDNA_intron_boundary i_start="69465" i_stop="69213" i_length="253"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="69212" e_stop="68987" e_length="226"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70078" stop="69939"/>
              <exon start="69747" stop="69466"/>
              <exon start="69212" stop="69033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70077" stop="69939"/>
              <exon start="69747" stop="69466"/>
              <exon start="69212" stop="68987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70077" stop="69939"/>
              <exon start="69747" stop="69466"/>
              <exon start="69212" stop="69123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421799" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAAAATGGATTTTTTCTCTAGGAATACAAGTGATGACTCTTCAGGTTTCCAGCAAGACATTGCTAGATGCCCATTTTTGACGAATATCAATGAGCCAACTAATTTTTCCTTCTCAAGCCCCATTGGTTTGCCCATTCCA : GTACGTGGAGGAAAAGGTCCTATCTTCGAGGATGGTCCTAACTTTGACATGGCATTCCGGCTTTTCCATGGCCAGAATGGTGCTGTCCCACTTTCTGGGAGGCTTTCCATTACGAATGAGAAACCAGATCCTGAATCTGTAGCTCGTCATTTCAACCCTTTGGTGGCAAAGGCAGCTACCATAAGTCTCTCATCTTTTGGGTTTGGAGGACCGTTTGGTTTTGATTCATTCTCTGAGAAGTGGAAGAATCAAAAGAAGAAGTCTGAGTCATCCAAAAGACAG : GGAGGAGATTCAGAACATGAAGCACTAAGCAATGAGTGGTTGCAGAATGGGAATTGTCCTATTGCAAAGTCGTACCGTGCTGTAAGTACTGTCCTTCCTCTTGTAGCAAAGGTTTTTCAGCCCCCTCCTGGTGTGAAACTCAAGTGCCCCCCTGCTATAGTAGCTGCCCGAGCTGCTCTATCACGGACAGCCTTTGCGAAAAACTTGCGACCACAACCTCTGCCTG</gDNA_template>
            <first_frame> V  K  W  I  F  S  L  G  I  Q  V  M  T  L  Q  V  S  S  K  T  L  L  D  A  H  F  *  R  I  S  M  S  Q  L  I  F  P  S  Q  A  P  L  V  C  P  F  Q :   Y  V  E  E  K  V  L  S  S  R  M  V  L  T  L  T  W  H  S  G  F  S  M  A  R  M  V  L  S  H  F  L  G  G  F  P  L  R  M  R  N  Q  I  L  N  L  *  L  V  I  S  T  L  W  W  Q  R  Q  L  P  *  V  S  H  L  L  G  L  E  D  R  L  V  L  I  H  S  L  R  S  G  R  I  K  R  R  S  L  S  H  P  K  D  R :   E  E  I  Q  N  M  K  H  *  A  M  S  G  C  R  M  G  I  V  L  L  Q  S  R  T  V  L  *  V  L  S  F  L  L  *  Q  R  F  F  S  P  L  L  V  *  N  S  S  A  P  L  L  *  *  L  P  E  L  L  Y  H  G  Q  P  L  R  K  T  C  D  H  N  L  C  L </first_frame>
            <second_frame>  *  N  G  F  F  L  *  E  Y  K  *  *  L  F  R  F  P  A  R  H  C  *  M  P  I  F  D  E  Y  Q  *  A  N  *  F  F  L  L  K  P  H  W  F  A  H  S   : S  T  W  R  K  R  S  Y  L  R  G  W  S  *  L  *  H  G  I  P  A  F  P  W  P  E  W  C  C  P  T  F  W  E  A  F  H  Y  E  *  E  T  R  S  *  I  C  S  S  S  F  Q  P  F  G  G  K  G  S  Y  H  K  S  L  I  F  W  V  W  R  T  V  W  F  *  F  I  L  *  E  V  E  E  S  K  E  E  V  *  V  I  Q  K  T   : G  R  R  F  R  T  *  S  T  K  Q  *  V  V  A  E  W  E  L  S  Y  C  K  V  V  P  C  C  K  Y  C  P  S  S  C  S  K  G  F  S  A  P  S  W  C  E  T  Q  V  P  P  C  Y  S  S  C  P  S  C  S  I  T  D  S  L  C  E  K  L  A  T  T  T  S  A   </second_frame>
            <third_frame>   K  M  D  F  F  S  R  N  T  S  D  D  S  S  G  F  Q  Q  D  I  A  R  C  P  F  L  T  N  I  N  E  P  T  N  F  S  F  S  S  P  I  G  L  P  I  P  :  V  R  G  G  K  G  P  I  F  E  D  G  P  N  F  D  M  A  F  R  L  F  H  G  Q  N  G  A  V  P  L  S  G  R  L  S  I  T  N  E  K  P  D  P  E  S  V  A  R  H  F  N  P  L  V  A  K  A  A  T  I  S  L  S  S  F  G  F  G  G  P  F  G  F  D  S  F  S  E  K  W  K  N  Q  K  K  K  S  E  S  S  K  R  Q  :  G  G  D  S  E  H  E  A  L  S  N  E  W  L  Q  N  G  N  C  P  I  A  K  S  Y  R  A  V  S  T  V  L  P  L  V  A  K  V  F  Q  P  P  P  G  V  K  L  K  C  P  P  A  I  V  A  A  R  A  A  L  S  R  T  A  F  A  K  N  L  R  P  Q  P  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70076" stop="69939"/>
                    <exon start="69747" stop="69466"/>
                    <exon start="69212" stop="68988"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>645</number_coding_nucleotides>
                  <number_encoded_amino_acids>215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMDFFSRNTSDDSSGFQQDIARCPFLTNINEPTNFSFSSPIGLPIPVRGGKGPIFEDGPNFDMAFRLFHGQNGAVPLSGRLSITNEKPDPESVARHFNPLVAKAATISLSSFGFGGPFGFDSFSEKWKNQKKKSESSKRQGGDSEHEALSNEWLQNGNCPIAKSYRAVSTVLPLVAKVFQPPPGVKLKCPPAIVAARAALSRTAFAKNLRPQPLP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71302" e_stop="71247"/>
            <exon e_start="70077" e_stop="69939"/>
            <exon e_start="69747" e_stop="69466"/>
            <exon e_start="69212" e_stop="68987"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.000" e_score="0.982"/>
          <exon-intron don_prob="0.978" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="71302" e_stop="71247" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.000">
            <gDNA_intron_boundary i_start="71246" i_stop="70078" i_length="1169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70077" e_stop="69939" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.962">
            <gDNA_intron_boundary i_start="69938" i_stop="69748" i_length="191"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69747" e_stop="69466" e_length="282"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.972">
            <gDNA_intron_boundary i_start="69465" i_stop="69213" i_length="253"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="69212" e_stop="68987" e_length="226"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71302" stop="71247"/>
              <exon start="70077" stop="69939"/>
              <exon start="69747" stop="69479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70077" stop="69939"/>
              <exon start="69747" stop="69466"/>
              <exon start="69212" stop="68987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70077" stop="69939"/>
              <exon start="69747" stop="69466"/>
              <exon start="69212" stop="69123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421799" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTAATTCACAAATTTTCTTCCTCTGAGTTTTCATACAAGTTTTTTTTGTCTTGAG : TAAAATGGATTTTTTCTCTAGGAATACAAGTGATGACTCTTCAGGTTTCCAGCAAGACATTGCTAGATGCCCATTTTTGACGAATATCAATGAGCCAACTAATTTTTCCTTCTCAAGCCCCATTGGTTTGCCCATTCCA : GTACGTGGAGGAAAAGGTCCTATCTTCGAGGATGGTCCTAACTTTGACATGGCATTCCGGCTTTTCCATGGCCAGAATGGTGCTGTCCCACTTTCTGGGAGGCTTTCCATTACGAATGAGAAACCAGATCCTGAATCTGTAGCTCGTCATTTCAACCCTTTGGTGGCAAAGGCAGCTACCATAAGTCTCTCATCTTTTGGGTTTGGAGGACCGTTTGGTTTTGATTCATTCTCTGAGAAGTGGAAGAATCAAAAGAAGAAGTCTGAGTCATCCAAAAGACAG : GGAGGAGATTCAGAACATGAAGCACTAAGCAATGAGTGGTTGCAGAATGGGAATTGTCCTATTGCAAAGTCGTACCGTGCTGTAAGTACTGTCCTTCCTCTTGTAGCAAAGGTTTTTCAGCCCCCTCCTGGTGTGAAACTCAAGTGCCCCCCTGCTATAGTAGCTGCCCGAGCTGCTCTATCACGGACAGCCTTTGCGAAAAACTTGCGACCACAACCTCTGCCTG</gDNA_template>
            <first_frame> L  N  S  Q  I  F  F  L  *  V  F  I  Q  V  F  F  V  L  S :   K  M  D  F  F  S  R  N  T  S  D  D  S  S  G  F  Q  Q  D  I  A  R  C  P  F  L  T  N  I  N  E  P  T  N  F  S  F  S  S  P  I  G  L  P  I  P  :  V  R  G  G  K  G  P  I  F  E  D  G  P  N  F  D  M  A  F  R  L  F  H  G  Q  N  G  A  V  P  L  S  G  R  L  S  I  T  N  E  K  P  D  P  E  S  V  A  R  H  F  N  P  L  V  A  K  A  A  T  I  S  L  S  S  F  G  F  G  G  P  F  G  F  D  S  F  S  E  K  W  K  N  Q  K  K  K  S  E  S  S  K  R  Q  :  G  G  D  S  E  H  E  A  L  S  N  E  W  L  Q  N  G  N  C  P  I  A  K  S  Y  R  A  V  S  T  V  L  P  L  V  A  K  V  F  Q  P  P  P  G  V  K  L  K  C  P  P  A  I  V  A  A  R  A  A  L  S  R  T  A  F  A  K  N  L  R  P  Q  P  L  P  </first_frame>
            <second_frame>  L  I  H  K  F  S  S  S  E  F  S  Y  K  F  F  L  S  *   : V  K  W  I  F  S  L  G  I  Q  V  M  T  L  Q  V  S  S  K  T  L  L  D  A  H  F  *  R  I  S  M  S  Q  L  I  F  P  S  Q  A  P  L  V  C  P  F  Q :   Y  V  E  E  K  V  L  S  S  R  M  V  L  T  L  T  W  H  S  G  F  S  M  A  R  M  V  L  S  H  F  L  G  G  F  P  L  R  M  R  N  Q  I  L  N  L  *  L  V  I  S  T  L  W  W  Q  R  Q  L  P  *  V  S  H  L  L  G  L  E  D  R  L  V  L  I  H  S  L  R  S  G  R  I  K  R  R  S  L  S  H  P  K  D  R :   E  E  I  Q  N  M  K  H  *  A  M  S  G  C  R  M  G  I  V  L  L  Q  S  R  T  V  L  *  V  L  S  F  L  L  *  Q  R  F  F  S  P  L  L  V  *  N  S  S  A  P  L  L  *  *  L  P  E  L  L  Y  H  G  Q  P  L  R  K  T  C  D  H  N  L  C  L </second_frame>
            <third_frame>   *  F  T  N  F  L  P  L  S  F  H  T  S  F  F  C  L  E  :  *  N  G  F  F  L  *  E  Y  K  *  *  L  F  R  F  P  A  R  H  C  *  M  P  I  F  D  E  Y  Q  *  A  N  *  F  F  L  L  K  P  H  W  F  A  H  S   : S  T  W  R  K  R  S  Y  L  R  G  W  S  *  L  *  H  G  I  P  A  F  P  W  P  E  W  C  C  P  T  F  W  E  A  F  H  Y  E  *  E  T  R  S  *  I  C  S  S  S  F  Q  P  F  G  G  K  G  S  Y  H  K  S  L  I  F  W  V  W  R  T  V  W  F  *  F  I  L  *  E  V  E  E  S  K  E  E  V  *  V  I  Q  K  T   : G  R  R  F  R  T  *  S  T  K  Q  *  V  V  A  E  W  E  L  S  Y  C  K  V  V  P  C  C  K  Y  C  P  S  S  C  S  K  G  F  S  A  P  S  W  C  E  T  Q  V  P  P  C  Y  S  S  C  P  S  C  S  I  T  D  S  L  C  E  K  L  A  T  T  T  S  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71275" stop="71247"/>
                    <exon start="70077" stop="69939"/>
                    <exon start="69747" stop="69466"/>
                    <exon start="69212" stop="68988"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFIQVFFVLSKMDFFSRNTSDDSSGFQQDIARCPFLTNINEPTNFSFSSPIGLPIPVRGGKGPIFEDGPNFDMAFRLFHGQNGAVPLSGRLSITNEKPDPESVARHFNPLVAKAATISLSSFGFGGPFGFDSFSEKWKNQKKKSESSKRQGGDSEHEALSNEWLQNGNCPIAKSYRAVSTVLPLVAKVFQPPPGVKLKCPPAIVAARAALSRTAFAKNLRPQPLP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="71302" e_stop="71247"/>
            <exon e_start="70077" e_stop="69939"/>
            <exon e_start="69747" e_stop="69110"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.000" e_score="0.982"/>
          <exon-intron don_prob="0.978" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="71302" e_stop="71247" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.000">
            <gDNA_intron_boundary i_start="71246" i_stop="70078" i_length="1169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70077" e_stop="69939" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.962">
            <gDNA_intron_boundary i_start="69938" i_stop="69748" i_length="191"/>
          </intron>
          <exon e_serial="3" e_score="0.963">
            <gDNA_exon_boundary e_start="69747" e_stop="69110" e_length="638"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71302" stop="71247"/>
              <exon start="70077" stop="69939"/>
              <exon start="69747" stop="69479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69739" stop="69110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709344" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTAATTCACAAATTTTCTTCCTCTGAGTTTTCATACAAGTTTTTTTTGTCTTGAG : TAAAATGGATTTTTTCTCTAGGAATACAAGTGATGACTCTTCAGGTTTCCAGCAAGACATTGCTAGATGCCCATTTTTGACGAATATCAATGAGCCAACTAATTTTTCCTTCTCAAGCCCCATTGGTTTGCCCATTCCA : GTACGTGGAGGAAAAGGTCCTATCTTCGAGGATGGTCCTAACTTTGACATGGCATTCCGGCTTTTCCATGGCCAGAATGGTGCTGTCCCACTTTCTGGGAGGCTTTCCATTACGAATGAGAAACCAGATCCTGAATCTGTAGCTCGTCATTTCAACCCTTTGGTGGCAAAGGCAGCTACCATAAGTCTCTCATCTTTTGGGTTTGGAGGACCGTTTGGTTTTGATTCATTCTCTGAGAAGTGGAAGAATCAAAAGAAGAAGTCTGAGTCATCCAAAAGACAGGTTTGAGCCATTTCCTTTATGTTTTGTATCTCCCAAATTTCTCAAATGTCAAAGCTGTTGAATTTCATTGCAACTTCTCAAATATGACTTTGTCAAATGTTCATGGTCCAGGGAAACACTTTATTTGACTTCTTAAACTTCGTATAACTCTTGAAATATGATTGTTGGTGGACTTGAAAAACTTATCACTTTTGATGGAATAACCAAAACTCAGTCATATTGTTCCTGCTAACCATCATTTTGGATCTATCAGGGAGGAGATTCAGAACATGAAGCACTAAGCAATGAGTGGTTGCAGAATGGGAATTGTCCTATTGCAAAGTCGTACCGTGCTGTAAGTACTGTCCTTCCTCTTG</gDNA_template>
            <first_frame> L  N  S  Q  I  F  F  L  *  V  F  I  Q  V  F  F  V  L  S :   K  M  D  F  F  S  R  N  T  S  D  D  S  S  G  F  Q  Q  D  I  A  R  C  P  F  L  T  N  I  N  E  P  T  N  F  S  F  S  S  P  I  G  L  P  I  P  :  V  R  G  G  K  G  P  I  F  E  D  G  P  N  F  D  M  A  F  R  L  F  H  G  Q  N  G  A  V  P  L  S  G  R  L  S  I  T  N  E  K  P  D  P  E  S  V  A  R  H  F  N  P  L  V  A  K  A  A  T  I  S  L  S  S  F  G  F  G  G  P  F  G  F  D  S  F  S  E  K  W  K  N  Q  K  K  K  S  E  S  S  K  R  Q  V  *  A  I  S  F  M  F  C  I  S  Q  I  S  Q  M  S  K  L  L  N  F  I  A  T  S  Q  I  *  L  C  Q  M  F  M  V  Q  G  N  T  L  F  D  F  L  N  F  V  *  L  L  K  Y  D  C  W  W  T  *  K  T  Y  H  F  *  W  N  N  Q  N  S  V  I  L  F  L  L  T  I  I  L  D  L  S  G  R  R  F  R  T  *  S  T  K  Q  *  V  V  A  E  W  E  L  S  Y  C  K  V  V  P  C  C  K  Y  C  P  S  S   </first_frame>
            <second_frame>  L  I  H  K  F  S  S  S  E  F  S  Y  K  F  F  L  S  *   : V  K  W  I  F  S  L  G  I  Q  V  M  T  L  Q  V  S  S  K  T  L  L  D  A  H  F  *  R  I  S  M  S  Q  L  I  F  P  S  Q  A  P  L  V  C  P  F  Q :   Y  V  E  E  K  V  L  S  S  R  M  V  L  T  L  T  W  H  S  G  F  S  M  A  R  M  V  L  S  H  F  L  G  G  F  P  L  R  M  R  N  Q  I  L  N  L  *  L  V  I  S  T  L  W  W  Q  R  Q  L  P  *  V  S  H  L  L  G  L  E  D  R  L  V  L  I  H  S  L  R  S  G  R  I  K  R  R  S  L  S  H  P  K  D  R  F  E  P  F  P  L  C  F  V  S  P  K  F  L  K  C  Q  S  C  *  I  S  L  Q  L  L  K  Y  D  F  V  K  C  S  W  S  R  E  T  L  Y  L  T  S  *  T  S  Y  N  S  *  N  M  I  V  G  G  L  E  K  L  I  T  F  D  G  I  T  K  T  Q  S  Y  C  S  C  *  P  S  F  W  I  Y  Q  G  G  D  S  E  H  E  A  L  S  N  E  W  L  Q  N  G  N  C  P  I  A  K  S  Y  R  A  V  S  T  V  L  P  L  </second_frame>
            <third_frame>   *  F  T  N  F  L  P  L  S  F  H  T  S  F  F  C  L  E  :  *  N  G  F  F  L  *  E  Y  K  *  *  L  F  R  F  P  A  R  H  C  *  M  P  I  F  D  E  Y  Q  *  A  N  *  F  F  L  L  K  P  H  W  F  A  H  S   : S  T  W  R  K  R  S  Y  L  R  G  W  S  *  L  *  H  G  I  P  A  F  P  W  P  E  W  C  C  P  T  F  W  E  A  F  H  Y  E  *  E  T  R  S  *  I  C  S  S  S  F  Q  P  F  G  G  K  G  S  Y  H  K  S  L  I  F  W  V  W  R  T  V  W  F  *  F  I  L  *  E  V  E  E  S  K  E  E  V  *  V  I  Q  K  T  G  L  S  H  F  L  Y  V  L  Y  L  P  N  F  S  N  V  K  A  V  E  F  H  C  N  F  S  N  M  T  L  S  N  V  H  G  P  G  K  H  F  I  *  L  L  K  L  R  I  T  L  E  I  *  L  L  V  D  L  K  N  L  S  L  L  M  E  *  P  K  L  S  H  I  V  P  A  N  H  H  F  G  S  I  R  E  E  I  Q  N  M  K  H  *  A  M  S  G  C  R  M  G  I  V  L  L  Q  S  R  T  V  L  *  V  L  S  F  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71275" stop="71247"/>
                    <exon start="70077" stop="69939"/>
                    <exon start="69747" stop="69460"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFIQVFFVLSKMDFFSRNTSDDSSGFQQDIARCPFLTNINEPTNFSFSSPIGLPIPVRGGKGPIFEDGPNFDMAFRLFHGQNGAVPLSGRLSITNEKPDPESVARHFNPLVAKAATISLSSFGFGGPFGFDSFSEKWKNQKKKSESSKRQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="72971" PGL_stop="75935"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72971" e_stop="73126"/>
            <exon e_start="75064" e_stop="75935"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.940" e_score="0.923"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="72971" e_stop="73126" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.940">
            <gDNA_intron_boundary i_start="73127" i_stop="75063" i_length="1937"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="75064" e_stop="75935" e_length="872"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72971" stop="73126"/>
              <exon start="75064" stop="75155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72974" stop="73126"/>
              <exon start="75064" stop="75642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73036" stop="73126"/>
              <exon start="75064" stop="75828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73052" stop="73126"/>
              <exon start="75064" stop="75800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73053" stop="73126"/>
              <exon start="75064" stop="75693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73057" stop="73126"/>
              <exon start="75064" stop="75866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73057" stop="73126"/>
              <exon start="75064" stop="75770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73062" stop="73126"/>
              <exon start="75064" stop="75717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73070" stop="73126"/>
              <exon start="75064" stop="75540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73070" stop="73126"/>
              <exon start="75064" stop="75539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73078" stop="73126"/>
              <exon start="75064" stop="75384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73089" stop="73126"/>
              <exon start="75064" stop="75697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73089" stop="73126"/>
              <exon start="75064" stop="75693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75128" stop="75861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75128" stop="75836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75128" stop="75836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75128" stop="75833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75129" stop="75616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75152" stop="75806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75565" stop="75786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75685" stop="75935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218246" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTACTAACGAAGAAAACCCCAAAACCCTAGTGAAAAACAGAGAGATCTCCAGTTGTGGGGTTTTGCATCAGAAATTTGTCAATGGCAAGAAGAACCCTTTTTCACTTAGTTCGATCTCAAGCGAATCTACTAAAATCCACCAATTTTCATTCAG : GTGGTCATCTGGCTAGTTTTGGAACTAGGTCACTTGTCAGTGGTACCAAACCTGACCCTAGTTGTGTGACACATCTAGCTGCTATCCGTAAAAGGTGGCTATCACAGTCTGCAACAGCACAAGACGACAACAAGATCAGCATAGGGCCTCGCAAAGGAGGAGAAGGAGGAAATGATGAAAAGGATGGCGGAGTTGTCTACTATGGTCCTATCTCAAACACAATAAAGAATGTGAAGCTTCTGTCCCTTTCAACATGTTGCCTTTCTGTGTCTTTAGGCCCTGTCATAACCTTCATGACATCTACTGATTCAAATGTGATACTAAAGGGAGCAGTTGCATCTACCGTTATATTCTTCAGTGCTTCTACTACCGCTGCGCTTCACTGGTTTGTGAGTCCTTATATTCACAAACTGAGATGGAAGCCAGGTTCAGATTCTTTTGAAGTGGAGATGATGTCTTGGCTTGCAACTTTTATGCCGAAGACGATTAAGTTTGCAGATATCAAGCATCCTGACACCAATAGACCTTATGTAACATTCAAGGCTAACGGAAACTTTTATTTTGTTGATGCGGAGCATTGTCCGAACAAGGCGCTATTGGCAAAACTTACCCCACAGAAACCTACTCATGAGTCAGCTTTCAAGAACTTGTGATGACAACTTTTTATCTGGAATAATTTGAGATTTGAAGGTTTTGTATTGCATTGCTCACTAGAAGTTCCAATACTTGAGTCTTGGATATATATAAGCCTCAGTTGGTTGTCAATTTTTCAATTATTATAACATTGATTGTCTTATCTCTCTCTTCTTCTTTTTTTTTTTAAAAAGAAAATAATAGTAATGTCTAGACCAGCTTGGCAGGTCATTTCTTCC</gDNA_template>
            <first_frame> I  Y  *  R  R  K  P  Q  N  P  S  E  K  Q  R  D  L  Q  L  W  G  F  A  S  E  I  C  Q  W  Q  E  E  P  F  F  T  *  F  D  L  K  R  I  Y  *  N  P  P  I  F  I  Q  :  V  V  I  W  L  V  L  E  L  G  H  L  S  V  V  P  N  L  T  L  V  V  *  H  I  *  L  L  S  V  K  G  G  Y  H  S  L  Q  Q  H  K  T  T  T  R  S  A  *  G  L  A  K  E  E  K  E  E  M  M  K  R  M  A  E  L  S  T  M  V  L  S  Q  T  Q  *  R  M  *  S  F  C  P  F  Q  H  V  A  F  L  C  L  *  A  L  S  *  P  S  *  H  L  L  I  Q  M  *  Y  *  R  E  Q  L  H  L  P  L  Y  S  S  V  L  L  L  P  L  R  F  T  G  L  *  V  L  I  F  T  N  *  D  G  S  Q  V  Q  I  L  L  K  W  R  *  C  L  G  L  Q  L  L  C  R  R  R  L  S  L  Q  I  S  S  I  L  T  P  I  D  L  M  *  H  S  R  L  T  E  T  F  I  L  L  M  R  S  I  V  R  T  R  R  Y  W  Q  N  L  P  H  R  N  L  L  M  S  Q  L  S  R  T  C  D  D  N  F  L  S  G  I  I  *  D  L  K  V  L  Y  C  I  A  H  *  K  F  Q  Y  L  S  L  G  Y  I  *  A  S  V  G  C  Q  F  F  N  Y  Y  N  I  D  C  L  I  S  L  F  F  F  F  F  L  K  R  K  *  *  *  C  L  D  Q  L  G  R  S  F  L   </first_frame>
            <second_frame>  S  T  N  E  E  N  P  K  T  L  V  K  N  R  E  I  S  S  C  G  V  L  H  Q  K  F  V  N  G  K  K  N  P  F  S  L  S  S  I  S  S  E  S  T  K  I  H  Q  F  S  F  R :   W  S  S  G  *  F  W  N  *  V  T  C  Q  W  Y  Q  T  *  P  *  L  C  D  T  S  S  C  Y  P  *  K  V  A  I  T  V  C  N  S  T  R  R  Q  Q  D  Q  H  R  A  S  Q  R  R  R  R  R  K  *  *  K  G  W  R  S  C  L  L  W  S  Y  L  K  H  N  K  E  C  E  A  S  V  P  F  N  M  L  P  F  C  V  F  R  P  C  H  N  L  H  D  I  Y  *  F  K  C  D  T  K  G  S  S  C  I  Y  R  Y  I  L  Q  C  F  Y  Y  R  C  A  S  L  V  C  E  S  L  Y  S  Q  T  E  M  E  A  R  F  R  F  F  *  S  G  D  D  V  L  A  C  N  F  Y  A  E  D  D  *  V  C  R  Y  Q  A  S  *  H  Q  *  T  L  C  N  I  Q  G  *  R  K  L  L  F  C  *  C  G  A  L  S  E  Q  G  A  I  G  K  T  Y  P  T  E  T  Y  S  *  V  S  F  Q  E  L  V  M  T  T  F  Y  L  E  *  F  E  I  *  R  F  C  I  A  L  L  T  R  S  S  N  T  *  V  L  D  I  Y  K  P  Q  L  V  V  N  F  S  I  I  I  T  L  I  V  L  S  L  S  S  S  F  F  F  *  K  E  N  N  S  N  V  *  T  S  L  A  G  H  F  F  </second_frame>
            <third_frame>   L  L  T  K  K  T  P  K  P  *  *  K  T  E  R  S  P  V  V  G  F  C  I  R  N  L  S  M  A  R  R  T  L  F  H  L  V  R  S  Q  A  N  L  L  K  S  T  N  F  H  S   : G  G  H  L  A  S  F  G  T  R  S  L  V  S  G  T  K  P  D  P  S  C  V  T  H  L  A  A  I  R  K  R  W  L  S  Q  S  A  T  A  Q  D  D  N  K  I  S  I  G  P  R  K  G  G  E  G  G  N  D  E  K  D  G  G  V  V  Y  Y  G  P  I  S  N  T  I  K  N  V  K  L  L  S  L  S  T  C  C  L  S  V  S  L  G  P  V  I  T  F  M  T  S  T  D  S  N  V  I  L  K  G  A  V  A  S  T  V  I  F  F  S  A  S  T  T  A  A  L  H  W  F  V  S  P  Y  I  H  K  L  R  W  K  P  G  S  D  S  F  E  V  E  M  M  S  W  L  A  T  F  M  P  K  T  I  K  F  A  D  I  K  H  P  D  T  N  R  P  Y  V  T  F  K  A  N  G  N  F  Y  F  V  D  A  E  H  C  P  N  K  A  L  L  A  K  L  T  P  Q  K  P  T  H  E  S  A  F  K  N  L  *  *  Q  L  F  I  W  N  N  L  R  F  E  G  F  V  L  H  C  S  L  E  V  P  I  L  E  S  W  I  Y  I  S  L  S  W  L  S  I  F  Q  L  L  *  H  *  L  S  Y  L  S  L  L  L  F  F  F  K  K  K  I  I  V  M  S  R  P  A  W  Q  V  I  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73006" stop="73126"/>
                    <exon start="75064" stop="75716"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTERSPVVGFCIRNLSMARRTLFHLVRSQANLLKSTNFHSGGHLASFGTRSLVSGTKPDPSCVTHLAAIRKRWLSQSATAQDDNKISIGPRKGGEGGNDEKDGGVVYYGPISNTIKNVKLLSLSTCCLSVSLGPVITFMTSTDSNVILKGAVASTVIFFSASTTAALHWFVSPYIHKLRWKPGSDSFEVEMMSWLATFMPKTIKFADIKHPDTNRPYVTFKANGNFYFVDAEHCPNKALLAKLTPQKPTHESAFKNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="75932" PGL_stop="75064"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75932" e_stop="75064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="75932" e_stop="75064" e_length="869"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75932" stop="75174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75837" stop="75064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610527" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAATGACCTGCCAAGCTGGTCTAGACATTACTATTATTTTCTTTTTAAAAAAAAAAAGAAGAAGAGAGAGATAAGACAATCAATGTTATAATAATTGAAAAATTGACAACCAACTGAGGCTTATATATATCCAAGACTCAAGTATTGGAACTTCTAGTGAGCAATGCAATACAAAACCTTCAAATCTCAAATTATTCCAGATAAAAAGTTGTCATCACAAGTTCTTGAAAGCTGACTCATGAGTAGGTTTCTGTGGGGTAAGTTTTGCCAATAGCGCCTTGTTCGGACAATGCTCCGCATCAACAAAATAAAAGTTTCCGTTAGCCTTGAATGTTACATAAGGTCTATTGGTGTCAGGATGCTTGATATCTGCAAACTTAATCGTCTTCGGCATAAAAGTTGCAAGCCAAGACATCATCTCCACTTCAAAAGAATCTGAACCTGGCTTCCATCTCAGTTTGTGAATATAAGGACTCACAAACCAGTGAAGCGCAGCGGTAGTAGAAGCACTGAAGAATATAACGGTAGATGCAACTGCTCCCTTTAGTATCACATTTGAATCAGTAGATGTCATGAAGGTTATGACAGGGCCTAAAGACACAGAAAGGCAACATGTTGAAAGGGACAGAAGCTTCACATTCTTTATTGTGTTTGAGATAGGACCATAGTAGACAACTCCGCCATCCTTTTCATCATTTCCTCCTTCTCCTCCTTTGCGAGGCCCTATGCTGATCTTGTTGTCGTCTTGTGCTGTTGCAGACTGTGATAGCCACCTTTTACGGATAGCAGCTAGATGTGTCACACAACTAGGGTCAGGTTTGGTACCACTGACAAGTGACCTAGTTCCAAAACTAGCCAGATGACCAC</gDNA_template>
            <first_frame> R  N  D  L  P  S  W  S  R  H  Y  Y  Y  F  L  F  K  K  K  K  K  K  R  E  I  R  Q  S  M  L  *  *  L  K  N  *  Q  P  T  E  A  Y  I  Y  P  R  L  K  Y  W  N  F  *  *  A  M  Q  Y  K  T  F  K  S  Q  I  I  P  D  K  K  L  S  S  Q  V  L  E  S  *  L  M  S  R  F  L  W  G  K  F  C  Q  *  R  L  V  R  T  M  L  R  I  N  K  I  K  V  S  V  S  L  E  C  Y  I  R  S  I  G  V  R  M  L  D  I  C  K  L  N  R  L  R  H  K  S  C  K  P  R  H  H  L  H  F  K  R  I  *  T  W  L  P  S  Q  F  V  N  I  R  T  H  K  P  V  K  R  S  G  S  R  S  T  E  E  Y  N  G  R  C  N  C  S  L  *  Y  H  I  *  I  S  R  C  H  E  G  Y  D  R  A  *  R  H  R  K  A  T  C  *  K  G  Q  K  L  H  I  L  Y  C  V  *  D  R  T  I  V  D  N  S  A  I  L  F  I  I  S  S  F  S  S  F  A  R  P  Y  A  D  L  V  V  V  L  C  C  C  R  L  *  *  P  P  F  T  D  S  S  *  M  C  H  T  T  R  V  R  F  G  T  T  D  K  *  P  S  S  K  T  S  Q  M  T   </first_frame>
            <second_frame>  E  M  T  C  Q  A  G  L  D  I  T  I  I  F  F  L  K  K  K  R  R  R  E  R  *  D  N  Q  C  Y  N  N  *  K  I  D  N  Q  L  R  L  I  Y  I  Q  D  S  S  I  G  T  S  S  E  Q  C  N  T  K  P  S  N  L  K  L  F  Q  I  K  S  C  H  H  K  F  L  K  A  D  S  *  V  G  F  C  G  V  S  F  A  N  S  A  L  F  G  Q  C  S  A  S  T  K  *  K  F  P  L  A  L  N  V  T  *  G  L  L  V  S  G  C  L  I  S  A  N  L  I  V  F  G  I  K  V  A  S  Q  D  I  I  S  T  S  K  E  S  E  P  G  F  H  L  S  L  *  I  *  G  L  T  N  Q  *  S  A  A  V  V  E  A  L  K  N  I  T  V  D  A  T  A  P  F  S  I  T  F  E  S  V  D  V  M  K  V  M  T  G  P  K  D  T  E  R  Q  H  V  E  R  D  R  S  F  T  F  F  I  V  F  E  I  G  P  *  *  T  T  P  P  S  F  S  S  F  P  P  S  P  P  L  R  G  P  M  L  I  L  L  S  S  C  A  V  A  D  C  D  S  H  L  L  R  I  A  A  R  C  V  T  Q  L  G  S  G  L  V  P  L  T  S  D  L  V  P  K  L  A  R  *  P  </second_frame>
            <third_frame>   K  *  P  A  K  L  V  *  T  L  L  L  F  S  F  *  K  K  K  E  E  E  R  D  K  T  I  N  V  I  I  I  E  K  L  T  T  N  *  G  L  Y  I  S  K  T  Q  V  L  E  L  L  V  S  N  A  I  Q  N  L  Q  I  S  N  Y  S  R  *  K  V  V  I  T  S  S  *  K  L  T  H  E  *  V  S  V  G  *  V  L  P  I  A  P  C  S  D  N  A  P  H  Q  Q  N  K  S  F  R  *  P  *  M  L  H  K  V  Y  W  C  Q  D  A  *  Y  L  Q  T  *  S  S  S  A  *  K  L  Q  A  K  T  S  S  P  L  Q  K  N  L  N  L  A  S  I  S  V  C  E  Y  K  D  S  Q  T  S  E  A  Q  R  *  *  K  H  *  R  I  *  R  *  M  Q  L  L  P  L  V  S  H  L  N  Q  *  M  S  *  R  L  *  Q  G  L  K  T  Q  K  G  N  M  L  K  G  T  E  A  S  H  S  L  L  C  L  R  *  D  H  S  R  Q  L  R  H  P  F  H  H  F  L  L  L  L  L  C  E  A  L  C  *  S  C  C  R  L  V  L  L  Q  T  V  I  A  T  F  Y  G  *  Q  L  D  V  S  H  N  *  G  Q  V  W  Y  H  *  Q  V  T  *  F  Q  N  *  P  D  D  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0141A12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="78071" PGL_stop="80339"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78071" e_stop="78582"/>
            <exon e_start="80120" e_stop="80339"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.954" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78071" e_stop="78582" e_length="512"/>
          </exon>
          <intron i_serial="1" don_prob="0.954" acc_prob="0.986">
            <gDNA_intron_boundary i_start="78583" i_stop="80119" i_length="1537"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80120" e_stop="80339" e_length="220"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78071" stop="78582"/>
              <exon start="80120" stop="80238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78079" stop="78493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78084" stop="78582"/>
              <exon start="80120" stop="80237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78174" stop="78582"/>
              <exon start="80120" stop="80339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78174" stop="78582"/>
              <exon start="80120" stop="80306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78174" stop="78582"/>
              <exon start="80120" stop="80267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78181" stop="78582"/>
              <exon start="80120" stop="80207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78358" stop="78582"/>
              <exon start="80120" stop="80231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580382" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCTAGAAAATCATTACATACCCTCAACACTATATATTATATATATATATATAAATATTTATATATATATACACATATACATACAAAAACCCTAGCAGCCCTGCGATCCTCCTCCGTCGACGATGCCGACGGCGAGAGTAATCGGAGCTCCGATTCATCGCATTGATATCCGCTGATTCCTTGTTTTTCCATTTCATTTCTTTGATCCTTGTTCCTGGCTGTTGTTGTGTTGAATTTAAACTTGTTTGTTGAAAGCTTCTGGAAATGTATAAGAACCAGTTACAGGAACTGGCACAAAGGAGTTGCTTCAACTTGCCGTCGTATACTTGTATAAGGGAAGGTCCGGATCATGCGCCTAGGTTTAAGGCTACGGTTAATTTCAATGGTGAGGTGTTTGAGAGTCCAAATTACTGCTCTACACTTCGACAGGCTGAACACTCTGCTGCTGAGGTTGCGTTGAATTCACTCTCTAATCGAGGTCCCTCCAACTCGCTTGCTGCTAGAATTCTG : GATGAGACAGGCGTATATAAGAATCTCTTACAGGAAGTTTCACAAAGAGTAGGAGCATCATTGCCAGCATATACTACTTTTAGATCTGGTCTAGGACATCTTCCTGTCTTTACCTGCACAGTGGAGTTGGCGGGCGTTACATTTACTGGTGAGTCAGCAAAGAATAAGAAGCAAGCTGAAAAGAATGCAGCTATGGCAGCTTGGTCATCTCTGAAATTAT</gDNA_template>
            <first_frame> L  S  R  K  S  L  H  T  L  N  T  I  Y  Y  I  Y  I  Y  K  Y  L  Y  I  Y  T  H  I  H  T  K  T  L  A  A  L  R  S  S  S  V  D  D  A  D  G  E  S  N  R  S  S  D  S  S  H  *  Y  P  L  I  P  C  F  S  I  S  F  L  *  S  L  F  L  A  V  V  V  L  N  L  N  L  F  V  E  S  F  W  K  C  I  R  T  S  Y  R  N  W  H  K  G  V  A  S  T  C  R  R  I  L  V  *  G  K  V  R  I  M  R  L  G  L  R  L  R  L  I  S  M  V  R  C  L  R  V  Q  I  T  A  L  H  F  D  R  L  N  T  L  L  L  R  L  R  *  I  H  S  L  I  E  V  P  P  T  R  L  L  L  E  F  W :   M  R  Q  A  Y  I  R  I  S  Y  R  K  F  H  K  E  *  E  H  H  C  Q  H  I  L  L  L  D  L  V  *  D  I  F  L  S  L  P  A  Q  W  S  W  R  A  L  H  L  L  V  S  Q  Q  R  I  R  S  K  L  K  R  M  Q  L  W  Q  L  G  H  L  *  N  Y </first_frame>
            <second_frame>  S  L  E  N  H  Y  I  P  S  T  L  Y  I  I  Y  I  Y  I  N  I  Y  I  Y  I  H  I  Y  I  Q  K  P  *  Q  P  C  D  P  P  P  S  T  M  P  T  A  R  V  I  G  A  P  I  H  R  I  D  I  R  *  F  L  V  F  P  F  H  F  F  D  P  C  S  W  L  L  L  C  *  I  *  T  C  L  L  K  A  S  G  N  V  *  E  P  V  T  G  T  G  T  K  E  L  L  Q  L  A  V  V  Y  L  Y  K  G  R  S  G  S  C  A  *  V  *  G  Y  G  *  F  Q  W  *  G  V  *  E  S  K  L  L  L  Y  T  S  T  G  *  T  L  C  C  *  G  C  V  E  F  T  L  *  S  R  S  L  Q  L  A  C  C  *  N  S   : G  *  D  R  R  I  *  E  S  L  T  G  S  F  T  K  S  R  S  I  I  A  S  I  Y  Y  F  *  I  W  S  R  T  S  S  C  L  Y  L  H  S  G  V  G  G  R  Y  I  Y  W  *  V  S  K  E  *  E  A  S  *  K  E  C  S  Y  G  S  L  V  I  S  E  I   </second_frame>
            <third_frame>   L  *  K  I  I  T  Y  P  Q  H  Y  I  L  Y  I  Y  I  *  I  F  I  Y  I  Y  T  Y  T  Y  K  N  P  S  S  P  A  I  L  L  R  R  R  C  R  R  R  E  *  S  E  L  R  F  I  A  L  I  S  A  D  S  L  F  F  H  F  I  S  L  I  L  V  P  G  C  C  C  V  E  F  K  L  V  C  *  K  L  L  E  M  Y  K  N  Q  L  Q  E  L  A  Q  R  S  C  F  N  L  P  S  Y  T  C  I  R  E  G  P  D  H  A  P  R  F  K  A  T  V  N  F  N  G  E  V  F  E  S  P  N  Y  C  S  T  L  R  Q  A  E  H  S  A  A  E  V  A  L  N  S  L  S  N  R  G  P  S  N  S  L  A  A  R  I  L  :  D  E  T  G  V  Y  K  N  L  L  Q  E  V  S  Q  R  V  G  A  S  L  P  A  Y  T  T  F  R  S  G  L  G  H  L  P  V  F  T  C  T  V  E  L  A  G  V  T  F  T  G  E  S  A  K  N  K  K  Q  A  E  K  N  A  A  M  A  A  W  S  S  L  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0141A12.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78325" stop="78582"/>
                    <exon start="80120" stop="80338"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLLEMYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEVFESPNYCSTLRQAEHSAAEVALNSLSNRGPSNSLAARILDETGVYKNLLQEVSQRVGASLPAYTTFRSGLGHLPVFTCTVELAGVTFTGESAKNKKQAEKNAAMAAWSSLKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 491 chains have been computed
$ 
$ memory statistics:
$ 1241056 bytes spliced alignments in total
$ 364 spliced alignments have been stored
$ 3409 bytes was the average size of a spliced alignment
$ 33800 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1778 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 553 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:25:55
-->
