<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:23:07"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331404" ref_strand="+" ref_description="SGN-U331404        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | nucleotide-sugar transporter family protein, low similarity to SP:Q9Y2D2 UDP N-acetylglucosamine transporter {Homo sapiens}; contains Pfam profile PF04142: Nucleotide-sugar transporter | chr5:25982192-25984619 REVERSE | Aliases: MXK3.23, MXK3_23(evalue: 3e-52, score=202) genbank/nr: gi|8843764|dbj|BAA97312.1| gene_id:MXK3.23~ref|NP_036375.1~similar to unknown protein [Arabidopsis thaliana](evalue: 2e-50, score=202)">
      <seq>aacactcatcttacctgatgactgttgagatgtccattattgggagtctctgtttgataagtagtacttccaagtccccagacggagaagctattagacagcatggattcttctatggatggactgcattaactttgatccctgttattctaaatgccgttggtggaattcttgtgggtcttgtgacttcatatgccggtggtgttaggaagggatttgtcattgtgtctgcgcttcttgtcactgctttgctccagttcatcttcgatggaaaacttccttcgccatactgcctcgtggcacttccattggttatgattagcataagcacataccaaaaatacccatatcgtgttaaaaagaagcaaatgtgaatcgtgaatacaccatattatgactcccatgaatatttgacaaaatacacaatcaattctactcatctaaaggaaaacagtgcttagagttgacaagtacttttagaggagtccaactctacctcagaactggaaaatttgagtaaaaatctgttgctttactagtagatatatctgcatttgatgtgtatggatatcctcagcatgattccgcattgagtagcagatattggatgaatctctggccggaaactcctatatttgcaatcggtctttctgagaagtcagaaagatatgtggtgcagattaccagctagtttgaagccgcgagatgaagtctagtttgagcttgaactcgggtgtaaaaagaaagatgctttctcttttatcgccttctcatattatatttgggtgggttatttagaaacagaaagactgttaacacctaatgagtggaaatgctatgtggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="5790" stop="3421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5490" g_stop="5354" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5353" i_stop="4876" i_length="478">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4875" g_stop="4801" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="212" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4800" i_stop="4355" i_length="446">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4354" g_stop="3721" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="847" r_length="635" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-U331404" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5490" e_stop="5354"/>
          <exon e_start="4875" e_stop="4801"/>
          <exon e_start="4354" e_stop="3721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTCATCTTACCTGATGACTGTTGAGATGTCCATTATTGGGAGTCTCTGTTTGATAAGTAGTACTTCCAAGTCCCCAGACGGAGAAGCTATTAGACAGCATGGATTCTTCTATGGATGGACTGCATTAACTTTGGTAAATCAGCATTGCCAATATGCAATTTTATTTTATATATTTTAATGTTTATCCATGGAAGCTTTTTAAATTGGTATGCAAGTACTCAAAACGTCCAGGAACAGGTATCGACATGAATATGAAGGTTTCCTGAAAAAACTAATTAGTTTCCTATCTGGGGATATCTTCTATTAATTTACCTGACGTGTTGTTATTATATGCATCTTATCCTCTGGTTAGATCAATTATCATTTTTAATTTGTTTGTTGAGGTTAATAAATTGTTCCATTAGTTAGGCTTTTACATAATTTTTCTTAATAAAAAATATCAAGATGAACTTGAAGATGAACTGGAACAATTAAAAGGATCAAGATGAACTGGAACGACAAAAAGAAATCAAGTGGCATGGATTCATTTTCTTTTGTTTTGGAAAAGGAGTCAGATCTATCTGAGGTAAAACTCATGATTTTACGTGATACCTCCACTTCTTTTGTTTCAGATCCCTGTTATTCTAAATGCCGTTGGTGGAATTCTTGTGGGTCTTGTGACTTCATATGCCGGTGGTGTTAGGAAGGTAAGTGTTTGCTCAACTTCTTATGCTTTACAAGTTGCGCGGAAATTGAATGGGCTTGAATTTTTTCTTGTTGCTATTCTTTTATTGCTTCGCGGCCCCCTTGATTCATTTGAGGCATTTTTAGCTCTGTTACATTACTATGATACTTGAAGTGGAGTCCTAGGACATTTTTATTCTTCTTATTCATAATATGTTCTCTTGATAGTTTATGGTGGAGCGGAGCAGTTAAATGTATGGTCTATTTTCTTTTCCAAATTTATCTGGTTTTTAATAAGACGAGATTATACAAGTTCTGTGCTGCTGAAGGAGCAAATCATCACTTCCCCTTTCCTCCATATGCCCAGTCTTCTTAAAAGAGTCCATCATGCTGTACATTTTGTAAATGTTCCTACCGTACTTTTTCTTGGCAATGTTATTTCTTACTGCTCGTCTTAAATTGTGCGCAGGGATTTGTCATTGTGTCTGCGCTTCTTGTCACTGCTTTGCTCCAGTTCATCTTCGATGGAAAACTTCCTTCGCCATACTGCCTCGTGGCACTTCCATTGGTTATGATTAGCATAAGCACATACCAAAAATACCCATATCGTGTTAAAAAGAAGCAAATGTGAATCGTGAATACACCATATTATGACTCCCATGAATATTTGACAAAATACACAATCAATTCTACTCATCTAAAGGAAAACAGTGCTTAGAGTTGACAAGTACTTTTAGAGGAGTCCAACTCTACCTCAGAACTGGAAAATTTGAGTAAAAATCTGTTGCTTTACTAGTAGATATATCTGCATTTGATGTGTATGGATATCCTCAGCATGATTCCGCATTGAGTAGCAGATATTGGATGAATCTCTGGCCGGAAACTCCTATATTTGCAATCGGTCTTTCTGAGAAGTCAGAAAGATATGTGGTGCAGATTACCAGCTAGTTTGAAGCCGCGAGATGAAGTCTAGTTTGAGCTTGAACTCGGGTGTAAAAAGAAAGATGCTTTCTCTTTTATCGCCTTCTCATATTATATTT-GTTGTGTTATTTAGAAACAGAAAGACTGTTAACACCTAATGAGTGGAAATGCTATGTGGAAAT</genome_strand>
        <mrna_strand>AACACTCATCTTACCTGATGACTGTTGAGATGTCCATTATTGGGAGTCTCTGTTTGATAAGTAGTACTTCCAAGTCCCCAGACGGAGAAGCTATTAGACAGCATGGATTCTTCTATGGATGGACTGCATTAACTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCTGTTATTCTAAATGCCGTTGGTGGAATTCTTGTGGGTCTTGTGACTTCATATGCCGGTGGTGTTAGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTTGTCATTGTGTCTGCGCTTCTTGTCACTGCTTTGCTCCAGTTCATCTTCGATGGAAAACTTCCTTCGCCATACTGCCTCGTGGCACTTCCATTGGTTATGATTAGCATAAGCACATACCAAAAATACCCATATCGTGTTAAAAAGAAGCAAATGTGAATCGTGAATACACCATATTATGACTCCCATGAATATTTGACAAAATACACAATCAATTCTACTCATCTAAAGGAAAACAGTGCTTAGAGTTGACAAGTACTTTTAGAGGAGTCCAACTCTACCTCAGAACTGGAAAATTTGAGTAAAAATCTGTTGCTTTACTAGTAGATATATCTGCATTTGATGTGTATGGATATCCTCAGCATGATTCCGCATTGAGTAGCAGATATTGGATGAATCTCTGGCCGGAAACTCCTATATTTGCAATCGGTCTTTCTGAGAAGTCAGAAAGATATGTGGTGCAGATTACCAGCTAGTTTGAAGCCGCGAGATGAAGTCTAGTTTGAGCTTGAACTCGGGTGTAAAAAGAAAGATGCTTTCTCTTTTATCGCCTTCTCATATTATATTTGGGTGGGTTATTTAGAAACAGAAAGACTGTTAACACCTAATGAGTGGAAATGCTATGTGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327454" ref_strand="+" ref_description="SGN-U327454        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | nucleotide-sugar transporter family protein, low similarity to SP:Q9Y2D2 UDP N-acetylglucosamine transporter {Homo sapiens}; contains Pfam profile PF04142: Nucleotide-sugar transporter | chr5:25982192-25984619 REVERSE | Aliases: MXK3.23, MXK3_23(evalue: 6e-67, score=231) genbank/nr: gi|18424900|ref|NP_569004.1| expressed protein [Arabidopsis thaliana] gi|21553407|gb|AAM62500.1| unknown [Arabidopsis thaliana](evalue: 4e-65, score=231)">
      <seq>tttcaaagtcatttgataaaacggcgtcgtgtacctttccgacgccatagccagacagcatagaaagcttcacgcgaagccttcaccagttcgacaacagcaataaccgaaggatccgattgaaacagacccgattgtgtgtacacattttcgggtcgacccgttatggctgctacggaatccaaaaaagtgaactccgagaacccggcggcggcaaaaaccggcggcaaagtgtggttttattctttgcttctcactttacagtatggtgctcagccgctaatatccaagcgttttgtcaggcgtgaagtgatagttacttcatctgttttaacatgtgaagcagttaaggttatttgtgctcttgttctcatggcaaaagaaggcactttgaagaaaatttaccgggagtggaccttatttggctctttgactgcatctggactgcctgctgctatttatgcactacaaaacagcttattgcagatctcatataaaaatcttgattcactcacgttttcaatcttgaaccaaacaaaactgttcttcacagccttgtttacttacataattttaaggcagaagcaatccattcaacaaattggggctcttttcttgttaatcatggcagctgtccttttaagtgttggtgaagctccagcaaagcttccagtagtagtaaccccgatgagatcttattctatggaattgtaccagttttgggtgcatctgtgctttctggtttggcatctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="10369" stop="5294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10069" g_stop="9768" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9767" i_stop="7265" i_length="2503">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7264" g_stop="7216" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="351" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7215" i_stop="7138" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7137" g_stop="6911" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="578" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6910" i_stop="5772" i_length="1139">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.753" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5771" g_stop="5594" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="755" r_length="177" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-U327454" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10069" e_stop="9768"/>
          <exon e_start="7264" e_stop="7216"/>
          <exon e_start="7137" e_stop="6911"/>
          <exon e_start="5771" e_stop="5594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAAGTCATTTGATAAAACGGCGTCGTGTACCTTTCCGACGCCATAGCCAGACAGCATAGAAAGCTTCACGCGAAGCCTTCACCAGTTCGACAACAGCAATAACCGAAGGATCCGATTGAAACAGACCCGATTGTGTGTACACATTTTCGGGTCGACCCGTTATGGCTGCTACGGAATCCAAAAAAGTGAACTCCGAGAACCCGGCGGCGGCAAAAACCGGCGGCAAAGTGTGGTTTTATTCTTTGCTTCTCACTTTACAGTATGGTGCTCAGCCGCTAATATCCAAGCGTTTTGTCAGGTTCAATTATACTTCCTTCAATTCAATTTTTTTATCTAATTGTCAGTTTTTTTTTAATTGTAGAATGCAATTTAATTCTCTGAACTAATTAATTTGTATCTCAATTCATGTTGAAGTATGCAAGTTTTTTTTTTTTTGATGTAGTTGTGGTTGTACTGTATACTAAGCATTATATATGTTCGTTCATATTGGTATTTAACGCTAATGAAGATAAGGGAAGAAAATTATCGAAGAATATCTCCGCCTTTACTGGTAATCCAAAGAATTCTTCGAAAAATCATAAAGGATAGAGACTACACACTAATCCTATTTATATACTAGCTAAACAATGTATTTAAGCTAGGTGTGTAGGACCGTGCTCGAAGAGTGAGTCTTACTAATATAAGATTGTCCATGTTGTTGTTGTTAAAGAAAAACAAAAAGTCCCACATCGGTTGTTGGTTAATGAGATGAGTGGAATCCTTATACGGCTCGGGCAAATCCTCCTCCCTTTGAGCTAGCTTTTGGGGTGTGAGTTAGGCTTAAGACCTAATTTCACATGGTATCAGAGCAGGGTCCATCTCAGCTGATGTTGGGGCCCCCAAAATCAAAATTGCCCACACACCAGATGGTAAGCACTAGGCGTGAGGTGGGGTGTTAAAGAATTATAAAAAGTTCCACTCGGTGGTTAATGAGATAGGTGAACTCCTTATAAGGCTTGGGCAATCCTCCTCCTTTTGAGCTAGCTTTTGGGGTGTGAGTTAGACCTAAGACCTAATTTCACAGTTGTCGAATAAGCAAAGGTCTTGCCGTCTTGGAAGCATTTATGGTTTATGGGTACATTTTGAGATTGCATATATACAGATTGATAAACAAGAATGATGGTGAGGTATGTGATTATTAAGAATGGATAATTAGGAGATCATCTTGTGATATTCACATTAGGAGGGCCATCCAAGTTGGGGTCAAGAGGAGATTGAGGATCTTTTCTCAGAAATAGATGATGAGGAAGGAGGGAACAGACCTTATAAAAAAATGATTAGGGAAAGGACGGAGGATTAATAATATCGGGTGGGAGTTAGCAGCAAAGTATGTTATGGTTAAATTGTATTACACGGAGTTGTCAGGTTGGTAGACAAGTCTCAAATGAAGTTGCTTTGTTTGCTTTGGTGTTCTGTACGAGACGCCATCTGATAGTATGAGAAAGAGGAGAATGATATTTGTGAGATGGTGTTGCATGTACAAAGATTTTGGACTCTGGAGACAATTAGGCAGGTTACGAAACTGTGGACCTTTGCATTCTCATTGTTTAGCATGTAGTGGTTGTTACCAACAATAGTAGAGGAATCTATCACCAGCTTGGAGACGAAAGAAAATTGACTGAAAGAAAGCAACACGGGGAACATCATCATTATGTTTTGCTTATGAAATGAAAGAAACAGAAGATTATTTCAGATAATAAGAATGACGAGGAAAGAGTTAAAAGATCATTTTTCTTTCACTTGTATTTTTGGTCTAAAGAAAGAATACCATATTGTACACTTAGTCGGGAAACTCATATATACCTATTGATGACCCAGACTGTTATCTGAACAACTTGTACATACTGTTGACACTTGGTGTGCATTTATCGATTTATCAAATGAAGTACAATATATACAAAATATAAAAATATTGCTGGTCTTGTTCTACTTGCACCATTCTTCATCCTCTTTCTGGTTGAATTCTTGTTGGGAGCTGAACTCCTCTTAAATGTTGGGTTCTTCTTCTGGTGTGACACAATACTTCTAGCACATGACTCGTGAATACGTCTCACTTAGTTAATTCTTACTTCTTAGTTGCAACTTACCTTGACTAAAAGGACTTTCTGAACCAACAGTAGATATACAACGGTTACGACTTACATATCATGTACCATGTGGGAGCGTAAGAAAATTGTTCTCTCTTTCTTAATAATGTGCAGAAGGTCAAAGGAAATTCGTCATATATCACATTGGTGTGAATAAAAACCTAAGTTCTAAAATTAGAAGAAAATTGTCTTGGTTGTGATGTTACTCCCAGTCTCAGTTATATCGAATCAGCCCCGATAAGGCGCCTAGAACTGGTTTAGCTTTTCCAGTCCCAGGAGCTTTGAGCTGGCTCAACCCCATGGAGATATGGGGATCAATCCTTAGGTAAATATCCAGTTAGGGATGGTCCCACATCCAATTGGGATGGCTCGATGAGCAAGGAAAGCTTTGTGCAAGAATTTTATCAATTTCTTAGATGAAGTAGGATATATAAACGAAAAAACAAACTCAAATTGAGATAAGCCCCTATGGGTTGCCTTGTTTCCACCTTTTTCCTTGTTTCCTCCTTGTCTCGACGAAGTTCTTTATTATGTTTATTTTGTTACTTCTTGTTATCTTGGTAAATGAAATGCTATATGCTTATCCTTTCACATAAATTGTTTGGTGATAAATGTTTTCTTGTTAAGATTATACTATATGACAATAGTATATTTCCTGTTCTGTTCTTCCTACAGGCGTGAAGTGATAGTTACTTCATCTGTTTTAACATGTGAAGCAGTTAAGGTAAATACTTTTTTCTCTGCATTATTTTTCACTCCATGGTTGCACATATTTACTTGCATATACCTTTCAACTTTTCAGGTTATTTGTGCTCTTGTTCTCATGGCAAAAGAAGGCACTTTGAAGAAAATTTACCGGGAGTGGACCTTATTTGGCTCTTTGACTGCATCTGGACTGCCTGCTGCTATTTATGCACTACAAAACAGCTTATTGCAGATCTCATATAAAAATCTTGATTCACTCACGTTTTCAATCTTGAACCAAACAAAACTGTTCTTCACAGCCTTGTTTACTTACATAATTTTAAGGTATGCTTTTTTCGTAACTCATGACCACACAAGTTAGTACGTAGATCCGAAATGTTTTCTATCCGTTGACAGTACTGATCGTTACCACTTTGTCTTAGACTTGTTTTGAAAAGATCATCCACCAAGTGTATGTTTGGTTAACTTTGGCAACCATACTAGTGCTTAGACTGATAGGGTCATTTGGTAACAAGGATAAGGGATTATAATCCCAGGGATAAAACGGGGGTTTTGTGACCTATAGGTCACAAGTTCGAGTTGTGGAATCAAACCACTGATGCTTGTGTCAGGGTAGACTGTCTACACTATAACCCCCTCCCCCCTTGAGATGCGGACTGTGTGAGTGCTGGATTCTTCGTTCACTGGACTGCCCTTTATTATATCTTATGCTAGGTAGAATATTTACTTCCGGGATTAGCTATCTCGAGATATTTTATGCCACAATTGTGATATCATATTTATACCACATTCTATATGGGATAATAAGAAATCCCGGACAAATTTGTTATTAAAAAATGCAACATTTGCCCTTCTCCAAACTTTTCTCCAAAAGACTTTTAAGAAAGCCAAGGTAAGAACTAAAAATTAAAGTTATCCAAGCTATCTAGTTTAAACTAGCCAAATGATTGATATTATACCCTTATATCCCATCTTTTTTCCAATCAACCAATCATCTACTGATAAAAGTATTTCCACTGAATAATCTTGTTGTTATCTGATCCCTGTATTATAATCCCAGAATAACTTGTTTGCAAACCAAATGACCCCTTAGTATCTCAGATACCTGATATGGTAAAATTTATTAGATCATGGCCGTCAAACAGTTCTTGTAAACATTATCTGTTTTCATAAGAACTTTTCGCTTACACATTCTCTGTTTTCGTGCAAGCTGTTCTTACATCATCTGATTCACTTAGCTGGCTAGTTGCTATATTTGTTATCTAAATTAAAATTTTGTGACATTCGAGATCTCTGTGTCGGTACAACCATCTCTTGTTTTAATTTTGATTCCTTAAACAATTTTAGCAATGAACAGTTTGTAGCTGCAATATCCTGCAAGTGTTCTTGTTAGTTACACTAATTGTGTATCAGGTGAATCCTGAGAGCCTTATTACCTCAAAATCCCTTCTTTATTTTCTCAGGCAGAAGCAATCCATTCAACAAATTGGGGCTCTTTTCTTGTTAATCATGGCAGCTGTCCTTTTAAGTGTTGGTGAAGGCTCCAGCAAAGCTTCCAGTAGTAGTAACCCCGATGAGATCTTATTCTATGGAATTGTACCAGTTTTGGTTGCATCTGTGCTTTCTGGTTTGGCATCTGCC</genome_strand>
        <mrna_strand>TTTCAAAGTCATTTGATAAAACGGCGTCGTGTACCTTTCCGACGCCATAGCCAGACAGCATAGAAAGCTTCACGCGAAGCCTTCACCAGTTCGACAACAGCAATAACCGAAGGATCCGATTGAAACAGACCCGATTGTGTGTACACATTTTCGGGTCGACCCGTTATGGCTGCTACGGAATCCAAAAAAGTGAACTCCGAGAACCCGGCGGCGGCAAAAACCGGCGGCAAAGTGTGGTTTTATTCTTTGCTTCTCACTTTACAGTATGGTGCTCAGCCGCTAATATCCAAGCGTTTTGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGAAGTGATAGTTACTTCATCTGTTTTAACATGTGAAGCAGTTAAG..............................................................................GTTATTTGTGCTCTTGTTCTCATGGCAAAAGAAGGCACTTTGAAGAAAATTTACCGGGAGTGGACCTTATTTGGCTCTTTGACTGCATCTGGACTGCCTGCTGCTATTTATGCACTACAAAACAGCTTATTGCAGATCTCATATAAAAATCTTGATTCACTCACGTTTTCAATCTTGAACCAAACAAAACTGTTCTTCACAGCCTTGTTTACTTACATAATTTTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGCAATCCATTCAACAAATTGGGGCTCTTTTCTTGTTAATCATGGCAGCTGTCCTTTTAAGTGTTGGTGAA-GCTCCAGCAAAGCTTCCAGTAGTAGTAACCCCGATGAGATCTTATTCTATGGAATTGTACCAGTTTTGGGTGCATCTGTGCTTTCTGGTTTGGCATCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330105" ref_strand="+" ref_description="SGN-U330105        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 3e-26, score=115) genbank/nr: putative(evalue: 9e-48, score=192)">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="+" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="25665" stop="26913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25965" g_stop="26613" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="+" ref_id="SGN-U330105" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25965" e_stop="26613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTATAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345812" ref_strand="+" ref_description="SGN-U345812        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-39, score=159) genbank/nr: gi|77548751|gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] >gi|62701868|gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] (evalue: 1e-101, score=372)">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="+" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="26324" stop="27731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26624" g_stop="27431" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="+" ref_id="SGN-U345812" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26624" e_stop="27431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327291" ref_strand="+" ref_description="SGN-U327291        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | structural maintenance of chromosomes (SMC) family protein, very strong similarity to SMC-like protein (MIM) (Arabidopsis thaliana) GI:5880614; contains Pfam profile PF02463: RecF/RecN/SMC N terminal domain | chr5:24731302-24739166 REVERSE | Aliases: MCI2.2, MCI2_2(evalue: 2e-111, score=399) genbank/nr: gi|15240258|ref|NP_200954.1| MIM protein [Arabidopsis thaliana] gi|10177176|dbj|BAB10445.1| SMC-like protein [Arabidopsis thaliana](evalue: 1e-109, score=399)">
      <seq>cagaacgtgagctaatgatgattgataaagatttaaaagatgcagaactgaagaagaatcactatgaaggtgtaatgagtacaaaagttctttcccaactcactggagcggaagcagagtatcaggaacttgagcacaaccgtagggagagctacaaaaaagcttcaatcatctgtcctgaaagtgaaattgaggctttaggtggctgtgatggaagcactccggagcaattaagtgcccatttagctaggctaagtcaaagacttcagcaagagagtcggagacatccagagtccattgaggacctccgcatgttgtacaacaaaaaagaacgcaaaattttaagaaagcagcaaacctacaaagcatttcgtgagaaattaggtgcatgccataaagccctcgagctacgatggagcaaattccagagaaatgctactcttttgaagcgacagttaacatggcaatttaatggacatttgggtaaaaaaggaatcagtgggcacatcaaagtttgttatgaagagaagactctttcaatagaggtaaaaatgccccaagatgcatcaagcagcagtgttcgtgacacacgaggactttcagggggagaacgctctttttcaactttgtgctttgcacttgctcttcatgagatgactgaagctccatttagagcaatggatgaatttgatgtatttatggatgctgttagcagaaaaatcagcctagacgctgtcgtggattttgcattggcacaaggatcacagtggatatttattacccctcatgacatcagtatggtgaagcaggatgaaagagtaaagaagcagcaaatggcggctcctcgttcttgattgcttttgtttttgctttttgggagatgtggttatttttgcggttttcgggttggtatgattatgaagtaggtttttgggtagggtttcgaatatcaaaatcaaattatttgtgtcggatatttaaatttattaatcaaatcgaaccaatagaacatggtttttcaacctcacgtttttctgataaagtaatcatacaaatatattatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="+" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="62033" stop="70499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62333" g_stop="62382" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62383" i_stop="62485" i_length="103">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.674" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62486" g_stop="62581" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="146" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62582" i_stop="64793" i_length="2212">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64794" g_stop="64930" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="283" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64931" i_stop="64993" i_length="63">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64994" g_stop="65096" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="386" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65097" i_stop="67284" i_length="2188">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67285" g_stop="67364" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="466" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67365" i_stop="67461" i_length="97">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67462" g_stop="67540" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="545" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67541" i_stop="67668" i_length="128">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67669" g_stop="67726" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="603" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67727" i_stop="68524" i_length="798">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="68525" g_stop="68622" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="701" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="68623" i_stop="69401" i_length="779">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="69402" g_stop="69496" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="796" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="69497" i_stop="69929" i_length="433">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="69930" g_stop="70189" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="797" r_stop="1056" r_length="260" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1066" polyA_stop="1075"/>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="+" ref_id="SGN-U327291" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1056</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62333" e_stop="62382"/>
          <exon e_start="62486" e_stop="62581"/>
          <exon e_start="64794" e_stop="64930"/>
          <exon e_start="64994" e_stop="65096"/>
          <exon e_start="67285" e_stop="67364"/>
          <exon e_start="67462" e_stop="67540"/>
          <exon e_start="67669" e_stop="67726"/>
          <exon e_start="68525" e_stop="68622"/>
          <exon e_start="69402" e_stop="69496"/>
          <exon e_start="69930" e_stop="70189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACGTGAGCTAATGATGATTGATAAAGATTTAAAAGATGCAGAACTGGTTCAGCTCTACTTTTAGTTGACACTTCATGTTTTTTTTCTTACCTGTGGTGATGTTTGTCAAAATTTATGGTACTTTGGTGCAATTTAAACTCTTATTTCAGAAGAAGAATCACTATGAAGGTGTAATGAGTACAAAAGTTCTTTCCCAACTCACTGGAGCGGAAGCAGAGTATCAGGAACTTGAGCACAACCGTAGGGTATAATAATTGCGCATTCATATAATTGTATGAGCACTAACAGGGATTGATTAAGATATTGTTATTGTACCAAACCAAAATATATTTTTTTTTGAAAATGGTAACTTCGTCTATTCCTCAAAAGTCAGTACACTGATCAGTATTTATAACACGTACTTCAAATTCTACTATCTTTTACTAAATTGAGTCTAGTACATCAATTAAGGAGATAGTATCATTTGAGTATAATTGATTACACCAAAAACATAATAGCATAAGACAATTTAGTTTGACTTTTTGCATACTATTCTCAACACTATCGAAAGCTCTAGAGTTCCTTTCCTTCCATATTGCCCACCATATGCTAGCTGGGACAATTCTCCATCTGTCTCTATTCTTGGATTGCTTTCCTGCTTCCTCCCAACTCTGAATTGCTTCTGTGATCTTGGCAGGCATGGTCCATGACATACCCTTAAGACTCAGGAATAACCTCCATAGTTGACTTGTGATCTTGCAGTGTAGAAAGAGATGGTCAACTGTTTTAGCAGTTTCCCCACAAAAGAAACAGCTGGAACATAATGGTATCCCCCTTTTCTTTAAGTTGTCTTGAGTCAATACAGCCTCCTTGGCTAACAACAAAACAAAACATGCCACTTCAAGTGGAGTTTTTGACTTCGAGATTCCTCTCCATGGCCAGTGACTTTGAGGCTGATTGGTGTGGTTCAAGCAGTTGTATGCACAACCCACCTTAAAGCTGCCCTTTCGATTGCCTTTCCACCACAAAATGTCCTGACCTCCTTCCAGTCCATTAAATTGCCCAATGGTGTTGAAAATATCTGCTACCCTTTGAATCTCCCAATCATTTAATTGTCTTCTAAAGATGAAGTTTCACGCTTGAGGAGTCCAGTGATCTACTATAGTCTTCTGTTGGTGAGATACTAGAGAGTATATATCAGGATACAAGGCCTCTAGCCTACCTGCCTCAAGCCAATCATCTTTCCAGAATTTTGTTTTCTCTCCATTCCTCACTTTGATCTGTGTGTTAGCCTTAAACTCGGACCACGGAGATCTGATGGATCTCCATACACTAACCCCATATAATATAGTCACTTCTTTGGTCATCCAGTTATCTTCCTCTTCATATTTTGCTCTAATGACTTCCTTCCGGTAGGTATGCTCTCCATTGCTGAACTTCCATAATTATTAATGATAATGTTCAACTAGTTAAATATTAGCCAGAAAAGCTTGATGAAGTGCTTAAACTCAAAGGGTCTTTAATTAATTATAATATTTTGTTGTTTACTGATTGAGACTATTGGCTTTCCTAGTCCGTTTTCCTATTGTAAATGCCTTTTTTGTTTGTGCTTTTGTGATATTTTCAATGTTCTATCACTCAATTTTTTGTTGTTGGGCCTATACTTTTGACTTTTCTACTAAAACAAAATCTAGTTACTATTAGGAAAAGCATATATTGGTTTCCAACAAATTATACACTTCAATAAAAGTCAGTGGAAGCCTTCCGAAGATTAGAATTAACTGCTTAGCTCTTTTCTATTTTTTGTGTTAACAAGATATTTTAGCTTAGAATAGAAGACATTTTTGATGTACTAGATTGTTTGTAGGCTTCAATCTGATTAAAGCCCAAAGATTCTGTAAAGATGTAATACTTTTTTGAAGGGGAACTACACTTTTTGGTTGTAGTATACCTGTGAATATCTATAGACTAATGTAACCAGCCTAAAAAAAAGGTCAGTGGAAGCTATTCATGCAATTGAAAGAAACATCATGTTTAGTTTCTCCTTTTGTTTTTAAGAACTCTTTTTGAGAGTACAGTGGTATTGCACATAGAACTACAAGCACTTGGTATTTTTTCTGAAATTATTTGACTTATATTGGTGTTCCATGAAATGTTTTAAATGGAAATATTTTTGTTAAGATAGTTGCGCAAATAACAGGAAGTATACCTTTGGCCAGTTACTGTATTTATAGAGTGATTATTAGAGATATAAGTCAGTTACTGGTGAGCCGAAATACTAACAGTATGAAAACTATGATCACGAATGTAATTGGCTCTTACATTTGTAGTTTGATTAACTGCTCACTGCCTTGTCCCCCCTCTTCATGGTCTACCTTATAAGTGGATATATGCTTCTCTCTCTCACTGCTCTAGTTTTCATTTATGTCAGAGGTAGCATCTTACAGTACCTTGCTTTAACTGTACCCCTGGCTGCAGGAGAGCTACAAAAAAGCTTCAATCATCTGTCCTGAAAGTGAAATTGAGGCTTTAGGTGGCTGTGATGGAAGCACTCCGGAGCAATTAAGTGCCCATTTAGCTAGGCTAAGTCAAAGACTTCAGCAAGAGAGTCGGAGGTAAGGATTTGATTTAAGTTTGATTGTTTATCTATTCAAACTCATTTATAAACTTCCATGCAGACATCCAGAGTCCATTGAGGACCTCCGCATGTTGTACAACAAAAAAGAACGCAAAATTTTAAGAAAGCAGCAAACCTACAAAGCATTTCGTGAGAAATTAGGTGTAAGTTACCTACTTTATGGTTATAGTTCACCCTCCTCCATCTGAAAATCGTAAAAATTGTTTTTTCCTGGCTCATAGAAAATGGTAATGAAGGAGTTTCTTGTGATTACCAGATGATTAGCAAGTCTTTTTTTGCTTTGTCATCATGTTAAGTGTGCTTAGATGTTAAATTTTGTTCTGTGAAGAAAAATATATTCTTGCTATTGATATGAATGACTTACTTCCTCACTGATGCTTGGTGCTTTATGCTAGTATGGAAATCTTTCCTGGAAACCTCTTTGCATTTTTTGTATTGGTCTTGCATTATTGGTTCCACATATCTTTTCCTGAAGATGGTACAGAGAGATGTTGGAAGCGATAAATCTTACCAAAGTTGTGTGATCTTCCTCAGAAGGCAATTTGCTTTAAAATCTCCAGTACTTTCTATCATAATCAGAGATGATATTTTTTTTTTGAGACAGTAACAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCCTAAATAAGTTACAGATTCCTAATTACAATTGTGGAGAGTACCAGGAAGATCTTTAATCCTATAGCAAAATTTACAAGGAACCTAAAACATCTTTAATTGATTCTAGATCTACCATTTACTCCTGTTTACACCAAAAAAGAAACAAAACTAAGCAGTTCATCTTAATCTTCTGGATGGAATTGCTCTTGTTCTGGAAGCATCTGAGATTTCTTTCTTTCCACACGGAGGTGGAATGATTTTCCATCTTTCGTTATGCCCGGAAATGCTTGCATAACTGCTCCATAACTTCAGGGTCTGCGTAACTTTCCTAGGCATAACTCTTTCATGTACTTCTTATTGATAAAGACATTCCACAAAATGTTGGTTATTCTACAGTAAAGGAAGAGATTGTTGATCTGAGATGATATAAGGAGGATTTTATTATAGAACTGGATAGTGTTAGAGTTTTCCACATCGGTTTAGGGCCTATAATGTACCAGTAAGAAAACATTATGGTATAATTTGGTTCATATACTAGTTTTAGAGGAGTTTTATAATACAGTGATTGCTTTAAACACTAATACCCATGTATCTAATTCCTGTATTTTGGTATGCGCTTGTATCAAGTATAAGATGATAGTGATACCTAAATATTGGAGTTGCAAGTATCATGTGGAGTTAGTTGAGGGGCACGCAAGTTGACCCGGACACCACGGTTTTTGAAAAAAGAGAAGATGATGCTTGAATTTTTCTACAACAAGTTATACTGGAACAAATGACAAACAATACCAAATTTGTACTGGGATTATTTTATCTGATCCCTCTAACCAAAGGACGCTATAGGCTGTTTTGATTTTCATACAGTTGAATGTTATCGAATATGGCAACATTTAATTCTTATTGAATTTTGGTAAATGCTTTTTTTTTATGACAAGGGAAACCCGCAGCTGCTACCCTTTGGGTGCGCACAGAGTAAAAACCCACTCCTATGCAATAGCTTGCAAACCACATAGGAGAGGTCACCCGCACTAAGCAAGCTTGGTGAGACGAGCTCGACCCAGAAGACAATCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGCAAATACTTTTCTTTGTTAAAATGTTTTTTTCTTTTATGCTAGAGTTATCTGTAAACAGTAAGACAGACAATTGTTCGTGTTATATATGGATTACTAGCTGCTTTCTCCAAATACTTAGTATTTGATTACCTACTAAGTGATTGTTCAAGATTGACTAGTGAAAATTTTACATCTAATTTCTCAGATTCTGTACCCGTTCTGAGTTAATTGGAATGACTAGAAATGCTACTTAAAATCATGAATCTTGACCTCCAACTTTACTCAAGTTTCTGCCTCACAGCTAAGTTAGTGAGGCAATGCCTCCTTAAGCTATGTGTTATAATTGTTAGTTTAATTGTTGCAATTCAGCCAATATTTATGACATATGGGGAATTGTGCTATAATAAGTCCGTTATTTGTTCCTAATACTTTTTGGATTTTTAATTGTTTCTTCACTTCCATTTGTAACTTTTTTACCCACTTGCTTAGTGCTAATGCAATCCATCTTGGGGTCTGGCCCTTTGTTTTGTTAAAGTTAACTAATATAAATCTTCCTAAACATATTGTCAGGCATGCCATAAAGCCCTCGAGCTACGATGGAGCAAATTCCAGAGAAATGCTACTCTTTTGAAGCGACAGTTAACATGGCAGTATGATCTCTATCATTTACATATCCATATTATGTAGGTTCCTTCGTTGTTAGTTCCTTCATATCTCAATTTTTCTTGATTGCCAATTTTGCATTAGATTTAATGGACATTTGGGTAAAAAAGGAATCAGTGGGCACATCAAAGTTTGTTATGAAGAGAAGACTCTTTCAATAGAGGTGATTTGAACTAACATGATATGGTTCTGTTTGTCTAAGCTAGTAGTCCATTATTATTTATGTGGTCTGATTCTTTAAATTTTGTTTCCGCCCCATATATCTTTTTGTTTCTCTGAAATATTCCTCAGGTAAAAATGCCCCAAGATGCATCAAGCAGCAGTGTTCGTGACACACGAGGACTTTCAGGTTTTTTTCTCTTTCTTTACAAATACTTGGATAGTGAATGCAAGAAACAATGGATGATGCCCTAGCACGGAAAATTTGAATGCTAAATCCCTTTTTTCTCAAATTTATATAGATACTCACACCACAATCAATCAACTAAGCCGTAATCCATAGCTAGTTGGGTTGGCACTGTGATCATATGTGGTAATGGTGTGGGAAAGAAAGTATCTTTAACATCTTGAGAAAGATCAACTTTAGGTCATTAGAATTGGGATGTGAGACTAGTTCGATGCTGCAGCCTTCAAGTACCGGAAGGGAAACAATATTTTTCTATCTAGACAGCATTGCAGATACGATATGAATAAATGTGCACACATAGAGGATATAATGAGTGGTTCCAATAGATTCTTTGGTCATGACTCATGTCCTTCCGTAAGCCTTATAAATGAGATGTCCGAATTCTCAACGGAAACTTAACTTTTGGCCAAGGGTTCAGTCACTTTCTGATGGGGGCAGTGCCCCCGCATGTTAAAATCCTAATGGGGAGTGGCCTGGTCAATTCTCTCCTTTCCCCTTCATTTTCCACCTGAAGCTTTTCCAATACCCATTTCCCGAGGCTTGTATATGTATTATGATGTTTGCATTTTCAGGGGCCATGACAAATTATATCTAATTTGCTTGTTAATTGCATGCTTTATTTGTACCTCTTTGTGATTATCTTTGACAATGAATTATTACTCCTGGGAGTATGTATGGATGCCTTCTTTGAGCATCTGGTAATTTTATCTGATGTGTAACTTTGTTCTCATGGAAAATCAGGGGGAGAACGCTCTTTTTCAACTTTGTGCTTTGCACTTGCTCTTCATGAGATGACTGAAGCTCCATTTAGAGCAATGGATGAATTTGATGTATTTATGGTGAGTTTTACAACTTGGCTTTGTTTTTGAACTTTATTAAAGAATGCTTTGCACTTGCTCAAAAAGCTGCTCTGAAAGCTGAAGGATTTCTCTTAAGTAGAGAATATATCTCAACTACTTGTTTGTAATGATCAGATGGCATAGTAGCAAAACATTCATAACCATATAATCTTCTTCTTCCAAAAAAAAAAGAACATTCATAACCACATATCTGTTGAAAGCTAAGTCATCACTAGGATTTGGTATTCTGGTTTTTCTTTTATTGTCCTCTTTACCATGAAATTACTGGCTATTTCTTCATTAACAAAGGTAATAAGAAGTCTCTTCTCTGTTAGATAAATGAATGAAACCACCTAGCTGTATGTTTTGCTTTTCACAATTTGTCCATTATAACTGCCATCATCAGGGATCAGATGTCTAGATGAGATTATTATTTGTATTATTCTGTAAATTTAAAGGTAGCTCAAATGGAGTAATGCAGAAGCTGCAAAGAATTGTGACACTTGAGGTGTTGTCTTTTAGATTCCTCATAGATTAGTGCCACCCCATGTATCTGGATGGATGGATCTTTTGATGCAAGCATAGTGTGGTAACTGTCGCAACGGGAGATTGGTTTACTTTTCTGGTCTTAATCATGAATAAGAATTGAAATATACTAATCTGTCAGGCATCTATGAATCCTCATTCTGTAGATTACATAGGGACAAGTTTAGTTTGCACTAAACATCGTAGAGAAACAGTCAATTGGTTGCAATCTGTAACTTCCCATTAATGTACAGGATGCTGTTAGCAGAAAAATCAGCCTAGACGCTGTCGTGGATTTTGCATTGGCACAAGGATCACAGTGGATATTTATTACCCCTCATGACATCAGGTAATCTGAAAATACGAATAATAAGTTATATATCAATCTGAAAGCCTTGATTTGTTTTTGCTACTTAAATTTATAGAAGGATGGATCATGCACTTGCTAAACATACTAATAAGTTTGTCTCTGCTCAATTTTGCAATTTATCTTTTAAGTCTGTAAGGTCAGTAAGATCCTTTTTCGTCGTTACCCAGAATAAAAGCTTTCATCTGGACTATTTGTGTCCAATTTACAAAGGAAAAGGTAAAGTCAGGGTAATGGCTGTTTTCATACACAGTTGGATAGAATTTATCAAACTGTTGTATGGCCAGAATTTATTAGAGGGAGCTCAGCCAAAACTGTTTGAATCTGCCTGCTATTTATCTCAATATCTTAATTCTCTATCTTTGCTTCGAATTGGTTGCAATATTGATCTGCTTAAACATTCTTTTGTATTCAGTATGGTGAAGCAGGATGAAAGAGTAAAGAAGCAGCAAATGGCGGCTCCTCGTTCTTGATTGCTTTTGTTTTTGCTTTTTGGGAGATGTGGTTATTTTTGCGGTTTTCGGGTTGGTATGATTATGAAGTAGGTTTTT-GGTAGGGTTTCGAATATCAAAAATCAAATTATTTGTGTCGGATATTTAAATTTATAAATCAAATCGAACCAATAGAACATGGTTTTTCAACCTCACGTTTTTCTGATAAAGTAATCATACAAAT</genome_strand>
        <mrna_strand>CAGAACGTGAGCTAATGATGATTGATAAAGATTTAAAAGATGCAGAACTG.......................................................................................................AAGAAGAATCACTATGAAGGTGTAATGAGTACAAAAGTTCTTTCCCAACTCACTGGAGCGGAAGCAGAGTATCAGGAACTTGAGCACAACCGTAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGCTACAAAAAAGCTTCAATCATCTGTCCTGAAAGTGAAATTGAGGCTTTAGGTGGCTGTGATGGAAGCACTCCGGAGCAATTAAGTGCCCATTTAGCTAGGCTAAGTCAAAGACTTCAGCAAGAGAGTCGGAG...............................................................ACATCCAGAGTCCATTGAGGACCTCCGCATGTTGTACAACAAAAAAGAACGCAAAATTTTAAGAAAGCAGCAAACCTACAAAGCATTTCGTGAGAAATTAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCATAAAGCCCTCGAGCTACGATGGAGCAAATTCCAGAGAAATGCTACTCTTTTGAAGCGACAGTTAACATGGCA.................................................................................................ATTTAATGGACATTTGGGTAAAAAAGGAATCAGTGGGCACATCAAAGTTTGTTATGAAGAGAAGACTCTTTCAATAGAG................................................................................................................................GTAAAAATGCCCCAAGATGCATCAAGCAGCAGTGTTCGTGACACACGAGGACTTTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAGAACGCTCTTTTTCAACTTTGTGCTTTGCACTTGCTCTTCATGAGATGACTGAAGCTCCATTTAGAGCAATGGATGAATTTGATGTATTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTGTTAGCAGAAAAATCAGCCTAGACGCTGTCGTGGATTTTGCATTGGCACAAGGATCACAGTGGATATTTATTACCCCTCATGACATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGTGAAGCAGGATGAAAGAGTAAAGAAGCAGCAAATGGCGGCTCCTCGTTCTTGATTGCTTTTGTTTTTGCTTTTTGGGAGATGTGGTTATTTTTGCGGTTTTCGGGTTGGTATGATTATGAAGTAGGTTTTTGGGTAGGGTTTCGAATATC-AAAATCAAATTATTTGTGTCGGATATTTAAATTTATTAATCAAATCGAACCAATAGAACATGGTTTTTCAACCTCACGTTTTTCTGATAAAGTAATCATACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340835" ref_strand="+" ref_description="SGN-U340835        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam profile PF04749: Protein of unknown function, DUF614 | chr5:20895839-20897360 REVERSE | Aliases: MFG13.11, MFG13_11(evalue: 2e-26, score=116) genbank/nr: gi|9759286|dbj|BAB09751.1| gb|AAB68038.1~gene_id:MFG13.11~strong similarity to unknown protein [Arabidopsis thaliana](evalue: 1e-24, score=116)">
      <seq>tatttggttggtggatgtgtggaatatatacgggtcttttccggcagtcgctgcagaagaagtatcatctcaagaattcgccctgtgacccttgcctagcacattgctgcttgcactggtgtgccttgtgccaggagcatagagagatgaagaatcgtctgtcagataattctgccctgccgatgacaatagtcaatcctccaccgattcaggagatgaatgctgctgcaagcgacaaccgcgaatatgtaccttcctcagcaaataactctgaacaaaccaacctcgagatgcaagctctatgaaaactctctctatttagcatatacttttcaattcattatatcacataaccagtttatacagtacgttgctggcacagtcaaccttggaactaagttatacaggaacaaaaaattaaagcacaggttaggcccttgaaaaataatgcctcaaaattattcaaatggtacctctctcggttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="84175" stop="82144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83875" g_stop="83802" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83801" i_stop="82855" i_length="947">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82854" g_stop="82460" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="469" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="494"/>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-U340835" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83875" e_stop="83802"/>
          <exon e_start="82854" e_stop="82460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTGGTTGGTGGATGTGTGGAATATATACGGGTCTTTTCCGGCAGTCGCTGCAGAAGAAGTATCATCTCAAGGTAACATCATCTTTATATGTTTGTGTTTTATTTATGCTTAATAAGGATCAAACCCTTTGTCCTTGATCAATTTTATTCACGGTTTTCTTGCAAGTCCTGCAATTCGTAATGATCAATTTTATTCACGGTTTTCTAGCAAGTCCTGCTATTCGTAACGGTTTAAAAATTTCTTAGCTTAGACTTCTCATCATCATTAGGACGGAGATCATCTTAAACATTCTAGTTGCAAGAAAGTGTCTTTCTGATGTTACTGTAACCAAAAGAATAAAGGGTAACAAAACGTTGAAGTACATTTTCATCATTAGCTGAAGTCGGCGTGCTTTTCATTTTTTAACCTATTTTTAATTGTTAATATTTACGGGAGAGGAGCTTCTGAGCAACGATAAAGTTGTCTCCATGGTTCAAGCTATGGAATTAGCCTGATGGTTGATGGTTGATGGTTGTTTCAGGGTAGGCTGCCTACATCACACCCTCGTAGGGTCTGGTCCTCCCCCCTGCATGAATGCGGGATATTTAGCGCACATATTTCGCTTGTTTTTCAATAAAGAAAGTTTACATTCTCTTTTTGTACAATGCAATGTTGCCTCTGTCATCTATGTGGTTTCTCTAAAGTTAACTGCTGGGAGATGAGAGTGAGACTTGTCATCATAGCAGTGAAAGAAACTTGAATGAACCATAGGAGACCAGTGTGTTCAAATCTTAGTAGATGCGAAAAAAAAACGCTTGGTGATTTCATCATCTATATGTCTTTTAAGTCTTGTCGAAAAGAGTTCCTCAACATCTACGCTGGTGGAGGTAACATGTACCCGGTGGATTAGTTAAGGTGTACACAAAACTGAGAGGTTATTAGAATGGGACTTCAGTCTTCATTTTTTACATTTAATATTGCATTTGTTCTTTACCAGATTGTACCTTATGGTTGTATACACCTTTCGAAAATGATGCAGAATTCGCCCTGTGACCCTTGCCTAGCACATTGCTGCTTGCACTGGTGTGCCTTGTGCCAGGAGCATAGAGAGATGAAGAATCGTCTGTCAGATAATTCTGCCCTGCCGATGACAATAGTCAATCCTCCACCGATTCAGGAGATGAATGCTGCTGCAAGCGACAACCGCGAATATGTACCTTCCTCAGCAAATAACTCTGAACAAACCAACCTCGAGATGCAAGCTCTATGAAAACTCTCTCTATTTAGCATATACTTTTCAATTCATTATATCACATAACCAGTTTATACAGTACGTTGCTGGCACAGTCAACCTTGGAACTAAGTTATACAGGAACAAAAAATTAAAGCACAGGTTAGGCCCTTGAAAAATAATGCCTCAAAATTATTCAAATG</genome_strand>
        <mrna_strand>TATTTGGTTGGTGGATGTGTGGAATATATACGGGTCTTTTCCGGCAGTCGCTGCAGAAGAAGTATCATCTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGCCCTGTGACCCTTGCCTAGCACATTGCTGCTTGCACTGGTGTGCCTTGTGCCAGGAGCATAGAGAGATGAAGAATCGTCTGTCAGATAATTCTGCCCTGCCGATGACAATAGTCAATCCTCCACCGATTCAGGAGATGAATGCTGCTGCAAGCGACAACCGCGAATATGTACCTTCCTCAGCAAATAACTCTGAACAAACCAACCTCGAGATGCAAGCTCTATGAAAACTCTCTCTATTTAGCATATACTTTTCAATTCATTATATCACATAACCAGTTTATACAGTACGTTGCTGGCACAGTCAACCTTGGAACTAAGTTATACAGGAACAAAAAATTAAAGCACAGGTTAGGCCCTTGAAAAATAATGCCTCAAAATTATTCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315678" ref_strand="+" ref_description="SGN-U315678        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: ATCPISCA | Involved in chloroplast Fe-S cluster assembly. Located in the chloroplast stroma. Expressed preferentially in green tissues. | chr1:3460001-3461420 REVERSE | Aliases: T10O24.11, T10O24_11, ATCPISCA(evalue: 1e-21, score=100) genbank/nr: HesB/YadR/YfhF(evalue: 4e-20, score=101)">
      <seq>aaacttgtgtgctctgtaaagtttgcttcattgattaactgatgccgcttgtggtgtaaaaattacctatatttagctcttgtatgcttctaaagctagcagtcatacccatctacttagattagttcactttgagacgaattttaatacccttgattcagtaagttccccttgcccattgtgtggcgttttttactcatgaagtagttaaagcttttagtgttgggtccatacaagaaaccagtactatttcactcttatatttgtaagttatgcgtgctagctacttgtttctgttttcttttcgagtgattattgacatttaaataagaaatttttgttgcatcaaccctttctttcagtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaatatagacagagacagtaatgaagatctgttaactcatattatgtgcataagggactgtaacgtttaaatatgtgtaactgggaatgcattatattcttcctgcacaaaatacaaaacatctatgccatgtcgttttatgcttcgtgaggcagagccgcaatgtaacgtgtgggttcatgtaaactcaatagttttgtgttggatcttgtatatgtatttttaaaatattattaaatttatgaaagattgtgaactcggttattattataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="90111" stop="88657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89811" g_stop="88964" g_length="848"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="848" r_length="848" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="849" polyA_stop="865"/>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-U315678" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89811" e_stop="88964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCGGTTATTATTAT</genome_strand>
        <mrna_strand>AAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCGGTTATTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315679" ref_strand="+" ref_description="SGN-U315679        Tomato 200607 #1 [25 ESTs aligned] arabidopsis/peptide: | Symbol: ATCPISCA | Involved in chloroplast Fe-S cluster assembly. Located in the chloroplast stroma. Expressed preferentially in green tissues. | chr1:3460001-3461420 REVERSE | Aliases: T10O24.11, T10O24_11, ATCPISCA(evalue: 1e-59, score=227) genbank/nr: HesB/YadR/YfhF(evalue: 2e-59, score=232)">
      <seq>aaaaatgatcacaattcaactagcacgtatgaataagccataaataaattatagaactgaaaattaaaaaaaaaaaattatcaattgtgtgatttgcaggtaacaatggcgttctctgcaactcttcgatgttcatcttctctacaccgcccttcgaagaattcaacaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaatatagacagagacagtaatgaagatctgttaactcatattatgtgcataagggactgtaacgtttaaatatgtgtaactgggaatgcattttattcttcctgcacaaaatacaaaacatctatgccatgtcgatttatgcttcgtgaggcagagccgcaatgtaacatgtgggttcacgtaaactcaatagttttgtgttggatcttgtatatgcatttttaaaatattattaaatttatgaaagattgtgaactcaattattatgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="88657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93208" g_stop="92935" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="493" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="88969" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="974" r_length="481" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="978" polyA_stop="993"/>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-U315679" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>974</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93208" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="88969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGATCACAATTCAACTAGCACGTATGAATAAGCCATAAATAAATTATAGAACTGAAAATTAAAAAAAAAAAATTATCAATTGTGTGATTTGCAGGTAACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCGGTTATT</genome_strand>
        <mrna_strand>AAAAATGATCACAATTCAACTAGCACGTATGAATAAGCCATAAATAAATTATAGAACTGAAAATTAAAAAAAAAAAATTATCAATTGTGTGATTTGCAGGTAACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTTTATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGATTTATGCTTCGTGAGGCAGAGCCGCAATGTAACATGTGGGTTCACGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGCATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCAATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335272" ref_strand="+" ref_description="SGN-U335272        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: ATCPISCA | Involved in chloroplast Fe-S cluster assembly. Located in the chloroplast stroma. Expressed preferentially in green tissues. | chr1:3460001-3461420 REVERSE | Aliases: T10O24.11, T10O24_11, ATCPISCA(evalue: 1e-21, score=100) genbank/nr: HesB/YadR/YfhF(evalue: 4e-20, score=101)">
      <seq>ttttccgttgaagttttactctcggggatctatctactcttcatacctcaaaacttgtgtgctctgtaaagtttgcttcattgattaactgatgccgcttgtggtgtaaaaattacctatatttagctcttgtatgcttctaaagctagcagtcatacccatctacttagattagttcactttgagacgaattttaatacccttgattcagtaagttccccttgcccattgtgtggcgttttttactcatgaagtagttaaagcttttagtgttgggtccatacaagaaaccagtactatttcactcttatatttgtaagttatgcgtgctagctacttgtttctgttttcttttcgagtgattattgacatttaaataagaaatttttgttgcatcaaccctttctttcagtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="90161" stop="88932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89861" g_stop="89232" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-U335272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89861" e_stop="89232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAA</genome_strand>
        <mrna_strand>TTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335271" ref_strand="+" ref_description="SGN-U335271        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: ATCPISCA | Involved in chloroplast Fe-S cluster assembly. Located in the chloroplast stroma. Expressed preferentially in green tissues. | chr1:3460001-3461420 REVERSE | Aliases: T10O24.11, T10O24_11, ATCPISCA(evalue: 9e-24, score=107) genbank/nr: HesB/YadR/YfhF(evalue: 5e-24, score=114)">
      <seq>ctttagttcggctgaagcagtaattaaagcacaacgttgacgttattacaggcgatctctcttggctctgataagttgctttggttctgatatatgcagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattggtatgtgtggatttaatttctcattttctaacatgacagtcttggtttcttttgccagagaatgaatatcttttcacaccaaatttagagcaaatttgcagttaatctccgttggatctgtgttcttctgcaaaccttaactccttagcatggaagaaaaataaattcagtgaaacaaccatacttgtgttaatcatgatactcaaccttcactttagttgatgagataagttagttgtgttcatttaatgaaaagacaataagataagtaaaaggaagtatggattgagtgattagttggcgtgatagataaaagaggtgatagatgcattagcaatttaatgtgatgaccctccatataattaaagnntcaagagtttacaggttttaacagtcttgtggggaaatagataggggaaatcactgctcaaatgaagtacaactttgctatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="91023" stop="89652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90723" g_stop="89952" g_length="772"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="772" r_length="772" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-U335271" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90723" e_stop="89952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGA-CCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATA</genome_strand>
        <mrna_strand>CTTTAGTTCGGCTGAAGCAGTAATTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCCTCCATAT-AATTAAAGNNTCAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335273" ref_strand="+" ref_description="SGN-U335273        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: ATCPISCA | Involved in chloroplast Fe-S cluster assembly. Located in the chloroplast stroma. Expressed preferentially in green tissues. | chr1:3460001-3461420 REVERSE | Aliases: T10O24.11, T10O24_11, ATCPISCA(evalue: 8e-24, score=107) genbank/nr: HesB/YadR/YfhF(evalue: 5e-24, score=114)">
      <seq>ttaggctgaagtaatagttaaagcacaacgttgacgttattacaggcgatctctcttggctctgataagttgctttggttctgatatatgcagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattggtatgtgtggatttaatttctcattttctaacatgacagtcttggtttcttttgccagagaatgaatatcttttcacaccaaatttagagcaaatttgcagttaatctccgttggatctgtgttcttctgcaaaccttaactccttagcatggaagaaaaataaattcagtgaaacaaccatacttgtgttaatcatgatactcaaccttcactttagttgatgagataagttagttgtgttcatttaatgaaaagacaataagataagtaaaaggaagtatggattgagtgattagttggcgtgatagataaaagaggtgatagatgcattagcaatttaatgtgatgacctccatatnaattaaagttcaaagagtttacaggttttaacagtcttgtggggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="91017" stop="89700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90717" g_stop="90000" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-U335273" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90717" e_stop="90000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAA</genome_strand>
        <mrna_strand>TTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATNAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>11</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5490" PGL_stop="3721"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5490" e_stop="5354"/>
            <exon e_start="4875" e_stop="4801"/>
            <exon e_start="4354" e_stop="3721"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.823" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5490" e_stop="5354" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.823" acc_prob="0.982">
            <gDNA_intron_boundary i_start="5353" i_stop="4876" i_length="478"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4875" e_stop="4801" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="4800" i_stop="4355" i_length="446"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="4354" e_stop="3721" e_length="634"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5490" stop="5354"/>
              <exon start="4875" stop="4801"/>
              <exon start="4354" stop="3721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331404" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACTCATCTTACCTGATGACTGTTGAGATGTCCATTATTGGGAGTCTCTGTTTGATAAGTAGTACTTCCAAGTCCCCAGACGGAGAAGCTATTAGACAGCATGGATTCTTCTATGGATGGACTGCATTAACTTTG : ATCCCTGTTATTCTAAATGCCGTTGGTGGAATTCTTGTGGGTCTTGTGACTTCATATGCCGGTGGTGTTAGGAAG : GGATTTGTCATTGTGTCTGCGCTTCTTGTCACTGCTTTGCTCCAGTTCATCTTCGATGGAAAACTTCCTTCGCCATACTGCCTCGTGGCACTTCCATTGGTTATGATTAGCATAAGCACATACCAAAAATACCCATATCGTGTTAAAAAGAAGCAAATGTGAATCGTGAATACACCATATTATGACTCCCATGAATATTTGACAAAATACACAATCAATTCTACTCATCTAAAGGAAAACAGTGCTTAGAGTTGACAAGTACTTTTAGAGGAGTCCAACTCTACCTCAGAACTGGAAAATTTGAGTAAAAATCTGTTGCTTTACTAGTAGATATATCTGCATTTGATGTGTATGGATATCCTCAGCATGATTCCGCATTGAGTAGCAGATATTGGATGAATCTCTGGCCGGAAACTCCTATATTTGCAATCGGTCTTTCTGAGAAGTCAGAAAGATATGTGGTGCAGATTACCAGCTAGTTTGAAGCCGCGAGATGAAGTCTAGTTTGAGCTTGAACTCGGGTGTAAAAAGAAAGATGCTTTCTCTTTTATCGCCTTCTCATATTATATTTGTTGTGTTATTTAGAAACAGAAAGACTGTTAACACCTAATGAGTGGAAATGCTATGTGGAAAT</gDNA_template>
            <first_frame> N  T  H  L  T  *  *  L  L  R  C  P  L  L  G  V  S  V  *  *  V  V  L  P  S  P  Q  T  E  K  L  L  D  S  M  D  S  S  M  D  G  L  H  *  L  * :   S  L  L  F  *  M  P  L  V  E  F  L  W  V  L  *  L  H  M  P  V  V  L  G  R :   D  L  S  L  C  L  R  F  L  S  L  L  C  S  S  S  S  S  M  E  N  F  L  R  H  T  A  S  W  H  F  H  W  L  *  L  A  *  A  H  T  K  N  T  H  I  V  L  K  R  S  K  C  E  S  *  I  H  H  I  M  T  P  M  N  I  *  Q  N  T  Q  S  I  L  L  I  *  R  K  T  V  L  R  V  D  K  Y  F  *  R  S  P  T  L  P  Q  N  W  K  I  *  V  K  I  C  C  F  T  S  R  Y  I  C  I  *  C  V  W  I  S  S  A  *  F  R  I  E  *  Q  I  L  D  E  S  L  A  G  N  S  Y  I  C  N  R  S  F  *  E  V  R  K  I  C  G  A  D  Y  Q  L  V  *  S  R  E  M  K  S  S  L  S  L  N  S  G  V  K  R  K  M  L  S  L  L  S  P  S  H  I  I  F  V  V  L  F  R  N  R  K  T  V  N  T  *  *  V  E  M  L  C  G  N </first_frame>
            <second_frame>  T  L  I  L  P  D  D  C  *  D  V  H  Y  W  E  S  L  F  D  K  *  Y  F  Q  V  P  R  R  R  S  Y  *  T  A  W  I  L  L  W  M  D  C  I  N  F   : D  P  C  Y  S  K  C  R  W  W  N  S  C  G  S  C  D  F  I  C  R  W  C  *  E   : G  I  C  H  C  V  C  A  S  C  H  C  F  A  P  V  H  L  R  W  K  T  S  F  A  I  L  P  R  G  T  S  I  G  Y  D  *  H  K  H  I  P  K  I  P  I  S  C  *  K  E  A  N  V  N  R  E  Y  T  I  L  *  L  P  *  I  F  D  K  I  H  N  Q  F  Y  S  S  K  G  K  Q  C  L  E  L  T  S  T  F  R  G  V  Q  L  Y  L  R  T  G  K  F  E  *  K  S  V  A  L  L  V  D  I  S  A  F  D  V  Y  G  Y  P  Q  H  D  S  A  L  S  S  R  Y  W  M  N  L  W  P  E  T  P  I  F  A  I  G  L  S  E  K  S  E  R  Y  V  V  Q  I  T  S  *  F  E  A  A  R  *  S  L  V  *  A  *  T  R  V  *  K  E  R  C  F  L  F  Y  R  L  L  I  L  Y  L  L  C  Y  L  E  T  E  R  L  L  T  P  N  E  W  K  C  Y  V  E   </second_frame>
            <third_frame>   H  S  S  Y  L  M  T  V  E  M  S  I  I  G  S  L  C  L  I  S  S  T  S  K  S  P  D  G  E  A  I  R  Q  H  G  F  F  Y  G  W  T  A  L  T  L  :  I  P  V  I  L  N  A  V  G  G  I  L  V  G  L  V  T  S  Y  A  G  G  V  R  K  :  G  F  V  I  V  S  A  L  L  V  T  A  L  L  Q  F  I  F  D  G  K  L  P  S  P  Y  C  L  V  A  L  P  L  V  M  I  S  I  S  T  Y  Q  K  Y  P  Y  R  V  K  K  K  Q  M  *  I  V  N  T  P  Y  Y  D  S  H  E  Y  L  T  K  Y  T  I  N  S  T  H  L  K  E  N  S  A  *  S  *  Q  V  L  L  E  E  S  N  S  T  S  E  L  E  N  L  S  K  N  L  L  L  Y  *  *  I  Y  L  H  L  M  C  M  D  I  L  S  M  I  P  H  *  V  A  D  I  G  *  I  S  G  R  K  L  L  Y  L  Q  S  V  F  L  R  S  Q  K  D  M  W  C  R  L  P  A  S  L  K  P  R  D  E  V  *  F  E  L  E  L  G  C  K  K  K  D  A  F  S  F  I  A  F  S  Y  Y  I  C  C  V  I  *  K  Q  K  D  C  *  H  L  M  S  G  N  A  M  W  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0135A02.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5488" stop="5354"/>
                    <exon start="4875" stop="4801"/>
                    <exon start="4354" stop="4193"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSSYLMTVEMSIIGSLCLISSTSKSPDGEAIRQHGFFYGWTALTLIPVILNAVGGILVGLVTSYAGGVRKGFVIVSALLVTALLQFIFDGKLPSPYCLVALPLVMISISTYQKYPYRVKKKQM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10069" PGL_stop="5594"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10069" e_stop="9768"/>
            <exon e_start="7264" e_stop="7216"/>
            <exon e_start="7137" e_stop="6911"/>
            <exon e_start="5771" e_stop="5594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.753" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10069" e_stop="9768" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="9767" i_stop="7265" i_length="2503"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7264" e_stop="7216" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="7215" i_stop="7138" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7137" e_stop="6911" e_length="227"/>
          </exon>
          <intron i_serial="3" don_prob="0.946" acc_prob="0.753">
            <gDNA_intron_boundary i_start="6910" i_stop="5772" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="5771" e_stop="5594" e_length="178"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10069" stop="9768"/>
              <exon start="7264" stop="7216"/>
              <exon start="7137" stop="6911"/>
              <exon start="5771" stop="5594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAAAGTCATTTGATAAAACGGCGTCGTGTACCTTTCCGACGCCATAGCCAGACAGCATAGAAAGCTTCACGCGAAGCCTTCACCAGTTCGACAACAGCAATAACCGAAGGATCCGATTGAAACAGACCCGATTGTGTGTACACATTTTCGGGTCGACCCGTTATGGCTGCTACGGAATCCAAAAAAGTGAACTCCGAGAACCCGGCGGCGGCAAAAACCGGCGGCAAAGTGTGGTTTTATTCTTTGCTTCTCACTTTACAGTATGGTGCTCAGCCGCTAATATCCAAGCGTTTTGTCAG : GCGTGAAGTGATAGTTACTTCATCTGTTTTAACATGTGAAGCAGTTAAG : GTTATTTGTGCTCTTGTTCTCATGGCAAAAGAAGGCACTTTGAAGAAAATTTACCGGGAGTGGACCTTATTTGGCTCTTTGACTGCATCTGGACTGCCTGCTGCTATTTATGCACTACAAAACAGCTTATTGCAGATCTCATATAAAAATCTTGATTCACTCACGTTTTCAATCTTGAACCAAACAAAACTGTTCTTCACAGCCTTGTTTACTTACATAATTTTAAG : GCAGAAGCAATCCATTCAACAAATTGGGGCTCTTTTCTTGTTAATCATGGCAGCTGTCCTTTTAAGTGTTGGTGAAGGCTCCAGCAAAGCTTCCAGTAGTAGTAACCCCGATGAGATCTTATTCTATGGAATTGTACCAGTTTTGGTTGCATCTGTGCTTTCTGGTTTGGCATCTGCC</gDNA_template>
            <first_frame> F  Q  S  H  L  I  K  R  R  R  V  P  F  R  R  H  S  Q  T  A  *  K  A  S  R  E  A  F  T  S  S  T  T  A  I  T  E  G  S  D  *  N  R  P  D  C  V  Y  T  F  S  G  R  P  V  M  A  A  T  E  S  K  K  V  N  S  E  N  P  A  A  A  K  T  G  G  K  V  W  F  Y  S  L  L  L  T  L  Q  Y  G  A  Q  P  L  I  S  K  R  F  V  R :   R  E  V  I  V  T  S  S  V  L  T  C  E  A  V  K  :  V  I  C  A  L  V  L  M  A  K  E  G  T  L  K  K  I  Y  R  E  W  T  L  F  G  S  L  T  A  S  G  L  P  A  A  I  Y  A  L  Q  N  S  L  L  Q  I  S  Y  K  N  L  D  S  L  T  F  S  I  L  N  Q  T  K  L  F  F  T  A  L  F  T  Y  I  I  L  R :   Q  K  Q  S  I  Q  Q  I  G  A  L  F  L  L  I  M  A  A  V  L  L  S  V  G  E  G  S  S  K  A  S  S  S  S  N  P  D  E  I  L  F  Y  G  I  V  P  V  L  V  A  S  V  L  S  G  L  A  S  A </first_frame>
            <second_frame>  F  K  V  I  *  *  N  G  V  V  Y  L  S  D  A  I  A  R  Q  H  R  K  L  H  A  K  P  S  P  V  R  Q  Q  Q  *  P  K  D  P  I  E  T  D  P  I  V  C  T  H  F  R  V  D  P  L  W  L  L  R  N  P  K  K  *  T  P  R  T  R  R  R  Q  K  P  A  A  K  C  G  F  I  L  C  F  S  L  Y  S  M  V  L  S  R  *  Y  P  S  V  L  S   : G  V  K  *  *  L  L  H  L  F  *  H  V  K  Q  L  R :   L  F  V  L  L  F  S  W  Q  K  K  A  L  *  R  K  F  T  G  S  G  P  Y  L  A  L  *  L  H  L  D  C  L  L  L  F  M  H  Y  K  T  A  Y  C  R  S  H  I  K  I  L  I  H  S  R  F  Q  S  *  T  K  Q  N  C  S  S  Q  P  C  L  L  T  *  F  *   : G  R  S  N  P  F  N  K  L  G  L  F  S  C  *  S  W  Q  L  S  F  *  V  L  V  K  A  P  A  K  L  P  V  V  V  T  P  M  R  S  Y  S  M  E  L  Y  Q  F  W  L  H  L  C  F  L  V  W  H  L   </second_frame>
            <third_frame>   S  K  S  F  D  K  T  A  S  C  T  F  P  T  P  *  P  D  S  I  E  S  F  T  R  S  L  H  Q  F  D  N  S  N  N  R  R  I  R  L  K  Q  T  R  L  C  V  H  I  F  G  S  T  R  Y  G  C  Y  G  I  Q  K  S  E  L  R  E  P  G  G  G  K  N  R  R  Q  S  V  V  L  F  F  A  S  H  F  T  V  W  C  S  A  A  N  I  Q  A  F  C  Q  :  A  *  S  D  S  Y  F  I  C  F  N  M  *  S  S  *   : G  Y  L  C  S  C  S  H  G  K  R  R  H  F  E  E  N  L  P  G  V  D  L  I  W  L  F  D  C  I  W  T  A  C  C  Y  L  C  T  T  K  Q  L  I  A  D  L  I  *  K  S  *  F  T  H  V  F  N  L  E  P  N  K  T  V  L  H  S  L  V  Y  L  H  N  F  K  :  A  E  A  I  H  S  T  N  W  G  S  F  L  V  N  H  G  S  C  P  F  K  C  W  *  R  L  Q  Q  S  F  Q  *  *  *  P  R  *  D  L  I  L  W  N  C  T  S  F  G  C  I  C  A  F  W  F  G  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0135A02.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9946" stop="9768"/>
                    <exon start="7264" stop="7216"/>
                    <exon start="7137" stop="6911"/>
                    <exon start="5771" stop="5594"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRPDCVYTFSGRPVMAATESKKVNSENPAAAKTGGKVWFYSLLLTLQYGAQPLISKRFVRREVIVTSSVLTCEAVKVICALVLMAKEGTLKKIYREWTLFGSLTASGLPAAIYALQNSLLQISYKNLDSLTFSILNQTKLFFTALFTYIILRQKQSIQQIGALFLLIMAAVLLSVGEGSSKASSSSNPDEILFYGIVPVLVASVLSGLASA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="25965" PGL_stop="26613"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25965" e_stop="26613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="25965" e_stop="26613" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25965" stop="26613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTATAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  *  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  *  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  L  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  I  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0135A02.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25966" stop="26613"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="26624" PGL_stop="27431"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26624" e_stop="27431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="26624" e_stop="27431" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26624" stop="27431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0135A02.3" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26626" stop="27429"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="62333" PGL_stop="70189"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62333" e_stop="62382"/>
            <exon e_start="62486" e_stop="62581"/>
            <exon e_start="64794" e_stop="64930"/>
            <exon e_start="64994" e_stop="65096"/>
            <exon e_start="67285" e_stop="67364"/>
            <exon e_start="67462" e_stop="67540"/>
            <exon e_start="67669" e_stop="67726"/>
            <exon e_start="68525" e_stop="68622"/>
            <exon e_start="69402" e_stop="69496"/>
            <exon e_start="69930" e_stop="70189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.912" acc_prob="0.674" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.792" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.896" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.785" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.811" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62333" e_stop="62382" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.912" acc_prob="0.674">
            <gDNA_intron_boundary i_start="62383" i_stop="62485" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62486" e_stop="62581" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.950" acc_prob="0.792">
            <gDNA_intron_boundary i_start="62582" i_stop="64793" i_length="2212"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64794" e_stop="64930" e_length="137"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64931" i_stop="64993" i_length="63"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64994" e_stop="65096" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.896" acc_prob="0.996">
            <gDNA_intron_boundary i_start="65097" i_stop="67284" i_length="2188"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67285" e_stop="67364" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.929" acc_prob="0.785">
            <gDNA_intron_boundary i_start="67365" i_stop="67461" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="67462" e_stop="67540" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67541" i_stop="67668" i_length="128"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="67669" e_stop="67726" e_length="58"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.960">
            <gDNA_intron_boundary i_start="67727" i_stop="68524" i_length="798"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="68525" e_stop="68622" e_length="98"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.811">
            <gDNA_intron_boundary i_start="68623" i_stop="69401" i_length="779"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="69402" e_stop="69496" e_length="95"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="69497" i_stop="69929" i_length="433"/>
          </intron>
          <exon e_serial="10" e_score="0.985">
            <gDNA_exon_boundary e_start="69930" e_stop="70189" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62333" stop="62382"/>
              <exon start="62486" stop="62581"/>
              <exon start="64794" stop="64930"/>
              <exon start="64994" stop="65096"/>
              <exon start="67285" stop="67364"/>
              <exon start="67462" stop="67540"/>
              <exon start="67669" stop="67726"/>
              <exon start="68525" stop="68622"/>
              <exon start="69402" stop="69496"/>
              <exon start="69930" stop="70189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327291" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAACGTGAGCTAATGATGATTGATAAAGATTTAAAAGATGCAGAACTG : AAGAAGAATCACTATGAAGGTGTAATGAGTACAAAAGTTCTTTCCCAACTCACTGGAGCGGAAGCAGAGTATCAGGAACTTGAGCACAACCGTAGG : GAGAGCTACAAAAAAGCTTCAATCATCTGTCCTGAAAGTGAAATTGAGGCTTTAGGTGGCTGTGATGGAAGCACTCCGGAGCAATTAAGTGCCCATTTAGCTAGGCTAAGTCAAAGACTTCAGCAAGAGAGTCGGAG : ACATCCAGAGTCCATTGAGGACCTCCGCATGTTGTACAACAAAAAAGAACGCAAAATTTTAAGAAAGCAGCAAACCTACAAAGCATTTCGTGAGAAATTAGGT : GCATGCCATAAAGCCCTCGAGCTACGATGGAGCAAATTCCAGAGAAATGCTACTCTTTTGAAGCGACAGTTAACATGGCA : ATTTAATGGACATTTGGGTAAAAAAGGAATCAGTGGGCACATCAAAGTTTGTTATGAAGAGAAGACTCTTTCAATAGAG : GTAAAAATGCCCCAAGATGCATCAAGCAGCAGTGTTCGTGACACACGAGGACTTTCAG : GGGGAGAACGCTCTTTTTCAACTTTGTGCTTTGCACTTGCTCTTCATGAGATGACTGAAGCTCCATTTAGAGCAATGGATGAATTTGATGTATTTATG : GATGCTGTTAGCAGAAAAATCAGCCTAGACGCTGTCGTGGATTTTGCATTGGCACAAGGATCACAGTGGATATTTATTACCCCTCATGACATCAG : TATGGTGAAGCAGGATGAAAGAGTAAAGAAGCAGCAAATGGCGGCTCCTCGTTCTTGATTGCTTTTGTTTTTGCTTTTTGGGAGATGTGGTTATTTTTGCGGTTTTCGGGTTGGTATGATTATGAAGTAGGTTTTTGGTAGGGTTTCGAATATCAAAAATCAAATTATTTGTGTCGGATATTTAAATTTATAAATCAAATCGAACCAATAGAACATGGTTTTTCAACCTCACGTTTTTCTGATAAAGTAATCATACAAAT</gDNA_template>
            <first_frame> Q  N  V  S  *  *  *  L  I  K  I  *  K  M  Q  N  * :   R  R  I  T  M  K  V  *  *  V  Q  K  F  F  P  N  S  L  E  R  K  Q  S  I  R  N  L  S  T  T  V  G :   R  A  T  K  K  L  Q  S  S  V  L  K  V  K  L  R  L  *  V  A  V  M  E  A  L  R  S  N  *  V  P  I  *  L  G  *  V  K  D  F  S  K  R  V  G   : D  I  Q  S  P  L  R  T  S  A  C  C  T  T  K  K  N  A  K  F  *  E  S  S  K  P  T  K  H  F  V  R  N  *  V :   H  A  I  K  P  S  S  Y  D  G  A  N  S  R  E  M  L  L  F  *  S  D  S  *  H  G   : N  L  M  D  I  W  V  K  K  E  S  V  G  T  S  K  F  V  M  K  R  R  L  F  Q  *  R :   *  K  C  P  K  M  H  Q  A  A  V  F  V  T  H  E  D  F  Q  :  G  E  N  A  L  F  Q  L  C  A  L  H  L  L  F  M  R  *  L  K  L  H  L  E  Q  W  M  N  L  M  Y  L  W :   M  L  L  A  E  K  S  A  *  T  L  S  W  I  L  H  W  H  K  D  H  S  G  Y  L  L  P  L  M  T  S   : V  W  *  S  R  M  K  E  *  R  S  S  K  W  R  L  L  V  L  D  C  F  C  F  C  F  L  G  D  V  V  I  F  A  V  F  G  L  V  *  L  *  S  R  F  L  V  G  F  R  I  S  K  I  K  L  F  V  S  D  I  *  I  Y  K  S  N  R  T  N  R  T  W  F  F  N  L  T  F  F  *  *  S  N  H  T  N </first_frame>
            <second_frame>  R  T  *  A  N  D  D  *  *  R  F  K  R  C  R  T   : E  E  E  S  L  *  R  C  N  E  Y  K  S  S  F  P  T  H  W  S  G  S  R  V  S  G  T  *  A  Q  P  *   : G  E  L  Q  K  S  F  N  H  L  S  *  K  *  N  *  G  F  R  W  L  *  W  K  H  S  G  A  I  K  C  P  F  S  *  A  K  S  K  T  S  A  R  E  S  E  :  T  S  R  V  H  *  G  P  P  H  V  V  Q  Q  K  R  T  Q  N  F  K  K  A  A  N  L  Q  S  I  S  *  E  I  R   : C  M  P  *  S  P  R  A  T  M  E  Q  I  P  E  K  C  Y  S  F  E  A  T  V  N  M  A  :  I  *  W  T  F  G  *  K  R  N  Q  W  A  H  Q  S  L  L  *  R  E  D  S  F  N  R   : G  K  N  A  P  R  C  I  K  Q  Q  C  S  *  H  T  R  T  F  R :   G  R  T  L  F  F  N  F  V  L  C  T  C  S  S  *  D  D  *  S  S  I  *  S  N  G  *  I  *  C  I  Y   : G  C  C  *  Q  K  N  Q  P  R  R  C  R  G  F  C  I  G  T  R  I  T  V  D  I  Y  Y  P  S  *  H  Q  :  Y  G  E  A  G  *  K  S  K  E  A  A  N  G  G  S  S  F  L  I  A  F  V  F  A  F  W  E  M  W  L  F  L  R  F  S  G  W  Y  D  Y  E  V  G  F  W  *  G  F  E  Y  Q  K  S  N  Y  L  C  R  I  F  K  F  I  N  Q  I  E  P  I  E  H  G  F  S  T  S  R  F  S  D  K  V  I  I  Q   </second_frame>
            <third_frame>   E  R  E  L  M  M  I  D  K  D  L  K  D  A  E  L  :  K  K  N  H  Y  E  G  V  M  S  T  K  V  L  S  Q  L  T  G  A  E  A  E  Y  Q  E  L  E  H  N  R  R  :  E  S  Y  K  K  A  S  I  I  C  P  E  S  E  I  E  A  L  G  G  C  D  G  S  T  P  E  Q  L  S  A  H  L  A  R  L  S  Q  R  L  Q  Q  E  S  R  R :   H  P  E  S  I  E  D  L  R  M  L  Y  N  K  K  E  R  K  I  L  R  K  Q  Q  T  Y  K  A  F  R  E  K  L  G  :  A  C  H  K  A  L  E  L  R  W  S  K  F  Q  R  N  A  T  L  L  K  R  Q  L  T  W  Q :   F  N  G  H  L  G  K  K  G  I  S  G  H  I  K  V  C  Y  E  E  K  T  L  S  I  E  :  V  K  M  P  Q  D  A  S  S  S  S  V  R  D  T  R  G  L  S   : G  G  E  R  S  F  S  T  L  C  F  A  L  A  L  H  E  M  T  E  A  P  F  R  A  M  D  E  F  D  V  F  M  :  D  A  V  S  R  K  I  S  L  D  A  V  V  D  F  A  L  A  Q  G  S  Q  W  I  F  I  T  P  H  D  I  S :   M  V  K  Q  D  E  R  V  K  K  Q  Q  M  A  A  P  R  S  *  L  L  L  F  L  L  F  G  R  C  G  Y  F  C  G  F  R  V  G  M  I  M  K  *  V  F  G  R  V  S  N  I  K  N  Q  I  I  C  V  G  Y  L  N  L  *  I  K  S  N  Q  *  N  M  V  F  Q  P  H  V  F  L  I  K  *  S  Y  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0135A02.3" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62335" stop="62382"/>
                    <exon start="62486" stop="62581"/>
                    <exon start="64794" stop="64930"/>
                    <exon start="64994" stop="65096"/>
                    <exon start="67285" stop="67364"/>
                    <exon start="67462" stop="67540"/>
                    <exon start="67669" stop="67726"/>
                    <exon start="68525" stop="68622"/>
                    <exon start="69402" stop="69496"/>
                    <exon start="69930" stop="69987"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERELMMIDKDLKDAELKKNHYEGVMSTKVLSQLTGAEAEYQELEHNRRESYKKASIICPESEIEALGGCDGSTPEQLSAHLARLSQRLQQESRRHPESIEDLRMLYNKKERKILRKQQTYKAFREKLGACHKALELRWSKFQRNATLLKRQLTWQFNGHLGKKGISGHIKVCYEEKTLSIEVKMPQDASSSSVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDAVVDFALAQGSQWIFITPHDISMVKQDERVKKQQMAAPRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="83875" PGL_stop="82460"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83875" e_stop="83802"/>
            <exon e_start="82854" e_stop="82460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83875" e_stop="83802" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="83801" i_stop="82855" i_length="947"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82854" e_stop="82460" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83875" stop="83802"/>
              <exon start="82854" stop="82460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340835" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTTGGTTGGTGGATGTGTGGAATATATACGGGTCTTTTCCGGCAGTCGCTGCAGAAGAAGTATCATCTCAAG : AATTCGCCCTGTGACCCTTGCCTAGCACATTGCTGCTTGCACTGGTGTGCCTTGTGCCAGGAGCATAGAGAGATGAAGAATCGTCTGTCAGATAATTCTGCCCTGCCGATGACAATAGTCAATCCTCCACCGATTCAGGAGATGAATGCTGCTGCAAGCGACAACCGCGAATATGTACCTTCCTCAGCAAATAACTCTGAACAAACCAACCTCGAGATGCAAGCTCTATGAAAACTCTCTCTATTTAGCATATACTTTTCAATTCATTATATCACATAACCAGTTTATACAGTACGTTGCTGGCACAGTCAACCTTGGAACTAAGTTATACAGGAACAAAAAATTAAAGCACAGGTTAGGCCCTTGAAAAATAATGCCTCAAAATTATTCAAATG</gDNA_template>
            <first_frame> Y  L  V  G  G  C  V  E  Y  I  R  V  F  S  G  S  R  C  R  R  S  I  I  S  R :   I  R  P  V  T  L  A  *  H  I  A  A  C  T  G  V  P  C  A  R  S  I  E  R  *  R  I  V  C  Q  I  I  L  P  C  R  *  Q  *  S  I  L  H  R  F  R  R  *  M  L  L  Q  A  T  T  A  N  M  Y  L  P  Q  Q  I  T  L  N  K  P  T  S  R  C  K  L  Y  E  N  S  L  Y  L  A  Y  T  F  Q  F  I  I  S  H  N  Q  F  I  Q  Y  V  A  G  T  V  N  L  G  T  K  L  Y  R  N  K  K  L  K  H  R  L  G  P  *  K  I  M  P  Q  N  Y  S  N  </first_frame>
            <second_frame>  I  W  L  V  D  V  W  N  I  Y  G  S  F  P  A  V  A  A  E  E  V  S  S  Q   : E  F  A  L  *  P  L  P  S  T  L  L  L  A  L  V  C  L  V  P  G  A  *  R  D  E  E  S  S  V  R  *  F  C  P  A  D  D  N  S  Q  S  S  T  D  S  G  D  E  C  C  C  K  R  Q  P  R  I  C  T  F  L  S  K  *  L  *  T  N  Q  P  R  D  A  S  S  M  K  T  L  S  I  *  H  I  L  F  N  S  L  Y  H  I  T  S  L  Y  S  T  L  L  A  Q  S  T  L  E  L  S  Y  T  G  T  K  N  *  S  T  G  *  A  L  E  K  *  C  L  K  I  I  Q  M </second_frame>
            <third_frame>   F  G  W  W  M  C  G  I  Y  T  G  L  F  R  Q  S  L  Q  K  K  Y  H  L  K  :  N  S  P  C  D  P  C  L  A  H  C  C  L  H  W  C  A  L  C  Q  E  H  R  E  M  K  N  R  L  S  D  N  S  A  L  P  M  T  I  V  N  P  P  P  I  Q  E  M  N  A  A  A  S  D  N  R  E  Y  V  P  S  S  A  N  N  S  E  Q  T  N  L  E  M  Q  A  L  *  K  L  S  L  F  S  I  Y  F  S  I  H  Y  I  T  *  P  V  Y  T  V  R  C  W  H  S  Q  P  W  N  *  V  I  Q  E  Q  K  I  K  A  Q  V  R  P  L  K  N  N  A  S  K  L  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0135A02.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83873" stop="83802"/>
                    <exon start="82854" stop="82624"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGWWMCGIYTGLFRQSLQKKYHLKNSPCDPCLAHCCLHWCALCQEHREMKNRLSDNSALPMTIVNPPPIQEMNAAASDNREYVPSSANNSEQTNLEMQAL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0135A02.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82709" stop="82488"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLLQATTANMYLPQQITLNKPTSRCKLYENSLYLAYTFQFIISHNQFIQYVAGTVNLGTKLYRNKKLKHRLGP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="93208" PGL_stop="88964"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90723" e_stop="89952"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="90723" e_stop="89952" e_length="772"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90723" stop="89952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90717" stop="90000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335273" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATA</gDNA_template>
            <first_frame> L  *  L  G  *  S  N  S  *  S  T  T  L  T  L  L  Q  A  I  S  L  G  S  D  K  L  L  W  F  *  Y  M  Q  Q  H  L  H  L  E  E  *  H  L  Q  F  P  *  L  T  M  H  *  C  T  *  I  K  *  G  V  I  G  M  R  T  C  V  L  E  L  A  L  N  K  G  D  A  R  E  C  H  T  L  W  S  L  K  S  E  K  M  L  D  Q  T  I  Q  S  S  S  T  M  D  L  L  L  V  C  V  D  L  I  S  H  F  L  T  *  Q  S  W  F  L  L  P  E  N  E  Y  L  F  T  P  N  L  E  Q  I  C  S  *  S  P  L  D  L  C  S  S  A  N  L  N  S  L  A  W  K  K  N  K  F  S  E  T  T  I  L  V  L  I  M  I  L  N  L  H  F  S  *  *  D  K  L  V  V  F  I  *  *  K  D  N  K  I  S  K  R  K  Y  G  L  S  D  *  L  A  *  *  I  K  E  V  I  D  A  L  A  I  *  C  D  D  L  H  I  N  *  S  S  K  S  L  Q  V  L  T  V  L  W  G  N  R  *  G  K  S  L  L  K  *  S  T  T  L  L  Y  </first_frame>
            <second_frame>  F  S  *  A  E  V  I  V  K  A  Q  R  *  R  Y  Y  R  R  S  L  L  A  L  I  S  C  F  G  S  D  I  C  S  S  T  C  I  W  R  S  S  T  C  N  F  L  N  *  Q  C  I  N  A  L  E  *  N  E  E  *  S  E  *  G  L  V  S  *  N  W  R  *  T  R  G  M  L  G  N  V  I  H  Y  G  V  *  K  A  R  K  C  *  T  R  R  F  N  H  R  V  Q  W  I  C  Y  W  Y  V  W  I  *  F  L  I  F  *  H  D  S  L  G  F  F  C  Q  R  M  N  I  F  S  H  Q  I  *  S  K  F  A  V  N  L  R  W  I  C  V  L  L  Q  T  L  T  P  *  H  G  R  K  I  N  S  V  K  Q  P  Y  L  C  *  S  *  Y  S  T  F  T  L  V  D  E  I  S  *  L  C  S  F  N  E  K  T  I  R  *  V  K  G  S  M  D  *  V  I  S  W  R  D  R  *  K  R  *  *  M  H  *  Q  F  N  V  M  T  S  I  *  I  K  V  Q  R  V  Y  R  F  *  Q  S  C  G  E  I  D  R  G  N  H  C  S  N  E  V  Q  L  C  Y  I </second_frame>
            <third_frame>   L  V  R  L  K  *  *  L  K  H  N  V  D  V  I  T  G  D  L  S  W  L  *  *  V  A  L  V  L  I  Y  A  A  A  P  A  S  G  G  V  A  P  A  I  S  L  T  D  N  A  L  M  H  L  N  K  M  R  S  D  R  N  E  D  L  C  L  R  I  G  V  K  Q  G  G  C  S  G  M  S  Y  T  M  E  F  E  K  R  E  N  A  R  P  D  D  S  I  I  E  Y  N  G  F  V  I  G  M  C  G  F  N  F  S  F  S  N  M  T  V  L  V  S  F  A  R  E  *  I  S  F  H  T  K  F  R  A  N  L  Q  L  I  S  V  G  S  V  F  F  C  K  P  *  L  L  S  M  E  E  K  *  I  Q  *  N  N  H  T  C  V  N  H  D  T  Q  P  S  L  *  L  M  R  *  V  S  C  V  H  L  M  K  R  Q  *  D  K  *  K  E  V  W  I  E  *  L  V  G  V  I  D  K  R  G  D  R  C  I  S  N  L  M  *  *  P  P  Y  K  L  K  F  K  E  F  T  G  F  N  S  L  V  G  K  *  I  G  E  I  T  A  Q  M  K  Y  N  F  A  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0135A02.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90649" stop="90341"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VALVLIYAAAPASGGVAPAISLTDNALMHLNKMRSDRNEDLCLRIGVKQGGCSGMSYTMEFEKRENARPDDSIIEYNGFVIGMCGFNFSFSNMTVLVSFARE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="89861" e_stop="88964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89861" e_stop="88964" e_length="898"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89861" stop="89232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89811" stop="88964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315678" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCGGTTATTATTAT</gDNA_template>
            <first_frame> F  S  V  E  V  L  L  S  G  I  Y  L  L  F  I  P  Q  N  L  C  A  L  *  S  L  L  H  *  L  T  D  A  A  C  G  V  K  I  T  Y  I  *  L  L  Y  A  S  K  A  S  S  H  T  H  L  L  R  L  V  H  F  E  T  N  F  N  T  L  D  S  V  S  S  P  C  P  L  C  G  V  F  Y  S  *  S  S  *  S  F  *  C  W  V  H  T  R  N  Q  Y  Y  F  T  L  I  F  V  S  Y  A  C  *  L  L  V  S  V  F  F  S  S  D  Y  *  H  L  N  K  K  F  L  L  H  Q  P  F  L  S  V  C  D  P  K  S  L  L  F  I  F  G  M  Q  L  D  Y  S  D  A  L  I  G  G  G  F  S  F  K  N  P  N  A  T  Q  T  C  G  C  G  K  S  F  T  A  E  M  *  E  H  A  V  L  E  M  Y  Y  K  I  N  I  L  E  H  Q  L  W  F  A  W  F  S  E  Y  R  Q  R  Q  *  *  R  S  V  N  S  Y  Y  V  H  K  G  L  *  R  L  N  M  C  N  W  E  C  I  I  F  F  L  H  K  I  Q  N  I  Y  A  M  S  F  Y  A  S  *  G  R  A  A  M  *  R  V  G  S  C  K  L  N  S  F  V  L  D  L  V  Y  V  F  L  K  Y  Y  *  I  Y  E  R  L  *  T  R  L  L  L  </first_frame>
            <second_frame>  F  P  L  K  F  Y  S  R  G  S  I  Y  S  S  Y  L  K  T  C  V  L  C  K  V  C  F  I  D  *  L  M  P  L  V  V  *  K  L  P  I  F  S  S  C  M  L  L  K  L  A  V  I  P  I  Y  L  D  *  F  T  L  R  R  I  L  I  P  L  I  Q  *  V  P  L  A  H  C  V  A  F  F  T  H  E  V  V  K  A  F  S  V  G  S  I  Q  E  T  S  T  I  S  L  L  Y  L  *  V  M  R  A  S  Y  L  F  L  F  S  F  R  V  I  I  D  I  *  I  R  N  F  C  C  I  N  P  F  F  Q  F  V  I  Q  K  A  F  S  S  S  S  E  C  N  W  T  T  A  M  H  *  *  A  G  A  S  L  S  K  I  Q  T  L  R  K  L  V  V  V  E  N  R  L  L  L  R  C  K  S  M  Q  S  *  K  C  T  T  K  L  T  Y  *  N  T  N  C  G  L  L  G  S  L  N  I  D  R  D  S  N  E  D  L  L  T  H  I  M  C  I  R  D  C  N  V  *  I  C  V  T  G  N  A  L  Y  S  S  C  T  K  Y  K  T  S  M  P  C  R  F  M  L  R  E  A  E  P  Q  C  N  V  W  V  H  V  N  S  I  V  L  C  W  I  L  Y  M  Y  F  *  N  I  I  K  F  M  K  D  C  E  L  G  Y  Y  Y </second_frame>
            <third_frame>   F  R  *  S  F  T  L  G  D  L  S  T  L  H  T  S  K  L  V  C  S  V  K  F  A  S  L  I  N  *  C  R  L  W  C  K  N  Y  L  Y  L  A  L  V  C  F  *  S  *  Q  S  Y  P  S  T  *  I  S  S  L  *  D  E  F  *  Y  P  *  F  S  K  F  P  L  P  I  V  W  R  F  L  L  M  K  *  L  K  L  L  V  L  G  P  Y  K  K  P  V  L  F  H  S  Y  I  C  K  L  C  V  L  A  T  C  F  C  F  L  F  E  *  L  L  T  F  K  *  E  I  F  V  A  S  T  L  S  F  S  L  *  S  K  K  P  S  L  H  L  R  N  A  T  G  L  Q  R  C  I  D  R  R  G  L  L  F  Q  K  S  K  R  Y  A  N  L  W  L  W  K  I  V  Y  C  *  D  V  R  A  C  S  L  R  N  V  L  Q  N  *  H  T  R  T  P  T  V  V  C  L  V  L  *  I  *  T  E  T  V  M  K  I  C  *  L  I  L  C  A  *  G  T  V  T  F  K  Y  V  *  L  G  M  H  Y  I  L  P  A  Q  N  T  K  H  L  C  H  V  V  L  C  F  V  R  Q  S  R  N  V  T  C  G  F  M  *  T  Q  *  F  C  V  G  S  C  I  C  I  F  K  I  L  L  N  L  *  K  I  V  N  S  V  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0135A02.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="93208" e_stop="92935"/>
            <exon e_start="90624" e_stop="90406"/>
            <exon e_start="89449" e_stop="88969"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.720" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93208" e_stop="92935" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.981">
            <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90624" e_stop="90406" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.720">
            <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="89449" e_stop="88969" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93208" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="88969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315679" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATGATCACAATTCAACTAGCACGTATGAATAAGCCATAAATAAATTATAGAACTGAAAATTAAAAAAAAAAAATTATCAATTGTGTGATTTGCAGGTAACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG : CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG : TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCGGTTATT</gDNA_template>
            <first_frame> K  N  D  H  N  S  T  S  T  Y  E  *  A  I  N  K  L  *  N  *  K  L  K  K  K  N  Y  Q  L  C  D  L  Q  V  T  M  A  F  S  A  T  L  R  C  S  S  S  L  H  R  P  S  K  N  S  T  I  S  S  V  L  P  Q  S  S  S  S  I  S  F  R  S  S  P  S  F  F  N  R  K  K  S  L  S  I  R  S  A  T  L  E   : A  A  P  A  S  G  G  V  A  P  A  I  S  L  T  D  N  A  L  M  H  L  N  K  M  R  S  D  R  N  E  D  L  C  L  R  I  G  V  K  Q  G  G  C  S  G  M  S  Y  T  M  E  F  E  K  R  E  N  A  R  P  D  D  S  I  I  E  Y  N  G  F  V  I   : V  C  D  P  K  S  L  L  F  I  F  G  M  Q  L  D  Y  S  D  A  L  I  G  G  G  F  S  F  K  N  P  N  A  T  Q  T  C  G  C  G  K  S  F  T  A  E  M  *  E  H  A  V  L  E  M  Y  Y  K  I  N  I  L  E  H  Q  L  W  F  A  W  F  S  E  Y  R  Q  R  Q  *  *  R  S  V  N  S  Y  Y  V  H  K  G  L  *  R  L  N  M  C  N  W  E  C  I  I  F  F  L  H  K  I  Q  N  I  Y  A  M  S  F  Y  A  S  *  G  R  A  A  M  *  R  V  G  S  C  K  L  N  S  F  V  L  D  L  V  Y  V  F  L  K  Y  Y  *  I  Y  E  R  L  *  T  R  L   </first_frame>
            <second_frame>  K  M  I  T  I  Q  L  A  R  M  N  K  P  *  I  N  Y  R  T  E  N  *  K  K  K  I  I  N  C  V  I  C  R  *  Q  W  R  S  L  Q  L  F  D  V  H  L  L  Y  T  A  L  R  R  I  Q  Q  F  Q  A  F  C  L  N  H  L  L  Q  S  P  F  D  L  R  L  R  F  L  I  A  K  N  H  C  L  F  D  L  L  H  L  K  :  Q  H  L  H  L  E  E  *  H  L  Q  F  P  *  L  T  M  H  *  C  T  *  I  K  *  G  V  I  G  M  R  T  C  V  L  E  L  A  L  N  K  G  D  A  R  E  C  H  T  L  W  S  L  K  S  E  K  M  L  D  Q  T  I  Q  S  S  S  T  M  D  L  L  L  :  F  V  I  Q  K  A  F  S  S  S  S  E  C  N  W  T  T  A  M  H  *  *  A  G  A  S  L  S  K  I  Q  T  L  R  K  L  V  V  V  E  N  R  L  L  L  R  C  K  S  M  Q  S  *  K  C  T  T  K  L  T  Y  *  N  T  N  C  G  L  L  G  S  L  N  I  D  R  D  S  N  E  D  L  L  T  H  I  M  C  I  R  D  C  N  V  *  I  C  V  T  G  N  A  L  Y  S  S  C  T  K  Y  K  T  S  M  P  C  R  F  M  L  R  E  A  E  P  Q  C  N  V  W  V  H  V  N  S  I  V  L  C  W  I  L  Y  M  Y  F  *  N  I  I  K  F  M  K  D  C  E  L  G  Y  </second_frame>
            <third_frame>   K  *  S  Q  F  N  *  H  V  *  I  S  H  K  *  I  I  E  L  K  I  K  K  K  K  L  S  I  V  *  F  A  G  N  N  G  V  L  C  N  S  S  M  F  I  F  S  T  P  P  F  E  E  F  N  N  F  K  R  F  A  S  I  I  F  F  N  L  L  S  I  F  A  F  V  F  *  S  Q  K  I  I  V  Y  S  I  C  Y  T  *  S :   S  T  C  I  W  R  S  S  T  C  N  F  L  N  *  Q  C  I  N  A  L  E  *  N  E  E  *  S  E  *  G  L  V  S  *  N  W  R  *  T  R  G  M  L  G  N  V  I  H  Y  G  V  *  K  A  R  K  C  *  T  R  R  F  N  H  R  V  Q  W  I  C  Y  C :   L  *  S  K  K  P  S  L  H  L  R  N  A  T  G  L  Q  R  C  I  D  R  R  G  L  L  F  Q  K  S  K  R  Y  A  N  L  W  L  W  K  I  V  Y  C  *  D  V  R  A  C  S  L  R  N  V  L  Q  N  *  H  T  R  T  P  T  V  V  C  L  V  L  *  I  *  T  E  T  V  M  K  I  C  *  L  I  L  C  A  *  G  T  V  T  F  K  Y  V  *  L  G  M  H  Y  I  L  P  A  Q  N  T  K  H  L  C  H  V  V  L  C  F  V  R  Q  S  R  N  V  T  C  G  F  M  *  T  Q  *  F  C  V  G  S  C  I  C  I  F  K  I  L  L  N  L  *  K  I  V  N  S  V  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0135A02.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93148" stop="92935"/>
                    <exon start="90624" stop="90406"/>
                    <exon start="89449" stop="89307"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLKKKNYQLCDLQVTMAFSATLRCSSSLHRPSKNSTISSVLPQSSSSISFRSSPSFFNRKKSLSIRSATLEAAPASGGVAPAISLTDNALMHLNKMRSDRNEDLCLRIGVKQGGCSGMSYTMEFEKRENARPDDSIIEYNGFVIVCDPKSLLFIFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFTAEM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 17 chains have been computed
$ 
$ memory statistics:
$ 21080 bytes spliced alignments in total
$ 11 spliced alignments have been stored
$ 1916 bytes was the average size of a spliced alignment
$ 13304 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1900 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 19 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:23:22
-->
