<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:23:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9207" ref_strand="+" ref_description="SGN-M9207 C2_At5g65000 [cosii_markers]">
      <seq>tttcaaagtcatttgataaaacggcgtcgtgtacctttccgacgccatagccagacagcatagaaagcttcacgcgaagccttcaccagttcgacaacagcaataaccgaaggatccgattgaaacagacccgattgtgtgtacacattttcgggtcgacccgttatggctgctacggaatccaaaaaagtgaactccgagaacccggcggcggcaaaaaccggcggcaaagtgtggttttattctttgcttctcactttacagtatggtgctcagccgctaatatccaagcgttttgtcaggcgtgaagtgatagttacttcatctgttttaacatgtgaagcagttaaggttatttgtgctcttgttctcatggcaaaagaaggcactttgaagaaaatttaccgggagtggaccttatttggctctttgactgcatctggactgcctgctgctatttatgcactacaaaacagcttattgcagatctcatataaaaatcttgattcactcacgttttcaatcttgaaccaaacaaaactgttcttcacagccttgtttacttacataattttaaggcagaagcaatccattcaacaaattggggctcttttcttgttaatcatggcagctgtccttttaagtgttggtgaagctccagcaaagcttccagtagtagtaaccccgatgagatcttattctatggaattgtaccagttttgggtgcatctgtgctttctggtttggcatctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="10369" stop="5294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10069" g_stop="9768" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9767" i_stop="7265" i_length="2503">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7264" g_stop="7216" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="351" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7215" i_stop="7138" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7137" g_stop="6911" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="578" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6910" i_stop="5772" i_length="1139">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.753" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5771" g_stop="5594" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="755" r_length="177" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-M9207" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M9207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10069" e_stop="9768"/>
          <exon e_start="7264" e_stop="7216"/>
          <exon e_start="7137" e_stop="6911"/>
          <exon e_start="5771" e_stop="5594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAAGTCATTTGATAAAACGGCGTCGTGTACCTTTCCGACGCCATAGCCAGACAGCATAGAAAGCTTCACGCGAAGCCTTCACCAGTTCGACAACAGCAATAACCGAAGGATCCGATTGAAACAGACCCGATTGTGTGTACACATTTTCGGGTCGACCCGTTATGGCTGCTACGGAATCCAAAAAAGTGAACTCCGAGAACCCGGCGGCGGCAAAAACCGGCGGCAAAGTGTGGTTTTATTCTTTGCTTCTCACTTTACAGTATGGTGCTCAGCCGCTAATATCCAAGCGTTTTGTCAGGTTCAATTATACTTCCTTCAATTCAATTTTTTTATCTAATTGTCAGTTTTTTTTTAATTGTAGAATGCAATTTAATTCTCTGAACTAATTAATTTGTATCTCAATTCATGTTGAAGTATGCAAGTTTTTTTTTTTTTGATGTAGTTGTGGTTGTACTGTATACTAAGCATTATATATGTTCGTTCATATTGGTATTTAACGCTAATGAAGATAAGGGAAGAAAATTATCGAAGAATATCTCCGCCTTTACTGGTAATCCAAAGAATTCTTCGAAAAATCATAAAGGATAGAGACTACACACTAATCCTATTTATATACTAGCTAAACAATGTATTTAAGCTAGGTGTGTAGGACCGTGCTCGAAGAGTGAGTCTTACTAATATAAGATTGTCCATGTTGTTGTTGTTAAAGAAAAACAAAAAGTCCCACATCGGTTGTTGGTTAATGAGATGAGTGGAATCCTTATACGGCTCGGGCAAATCCTCCTCCCTTTGAGCTAGCTTTTGGGGTGTGAGTTAGGCTTAAGACCTAATTTCACATGGTATCAGAGCAGGGTCCATCTCAGCTGATGTTGGGGCCCCCAAAATCAAAATTGCCCACACACCAGATGGTAAGCACTAGGCGTGAGGTGGGGTGTTAAAGAATTATAAAAAGTTCCACTCGGTGGTTAATGAGATAGGTGAACTCCTTATAAGGCTTGGGCAATCCTCCTCCTTTTGAGCTAGCTTTTGGGGTGTGAGTTAGACCTAAGACCTAATTTCACAGTTGTCGAATAAGCAAAGGTCTTGCCGTCTTGGAAGCATTTATGGTTTATGGGTACATTTTGAGATTGCATATATACAGATTGATAAACAAGAATGATGGTGAGGTATGTGATTATTAAGAATGGATAATTAGGAGATCATCTTGTGATATTCACATTAGGAGGGCCATCCAAGTTGGGGTCAAGAGGAGATTGAGGATCTTTTCTCAGAAATAGATGATGAGGAAGGAGGGAACAGACCTTATAAAAAAATGATTAGGGAAAGGACGGAGGATTAATAATATCGGGTGGGAGTTAGCAGCAAAGTATGTTATGGTTAAATTGTATTACACGGAGTTGTCAGGTTGGTAGACAAGTCTCAAATGAAGTTGCTTTGTTTGCTTTGGTGTTCTGTACGAGACGCCATCTGATAGTATGAGAAAGAGGAGAATGATATTTGTGAGATGGTGTTGCATGTACAAAGATTTTGGACTCTGGAGACAATTAGGCAGGTTACGAAACTGTGGACCTTTGCATTCTCATTGTTTAGCATGTAGTGGTTGTTACCAACAATAGTAGAGGAATCTATCACCAGCTTGGAGACGAAAGAAAATTGACTGAAAGAAAGCAACACGGGGAACATCATCATTATGTTTTGCTTATGAAATGAAAGAAACAGAAGATTATTTCAGATAATAAGAATGACGAGGAAAGAGTTAAAAGATCATTTTTCTTTCACTTGTATTTTTGGTCTAAAGAAAGAATACCATATTGTACACTTAGTCGGGAAACTCATATATACCTATTGATGACCCAGACTGTTATCTGAACAACTTGTACATACTGTTGACACTTGGTGTGCATTTATCGATTTATCAAATGAAGTACAATATATACAAAATATAAAAATATTGCTGGTCTTGTTCTACTTGCACCATTCTTCATCCTCTTTCTGGTTGAATTCTTGTTGGGAGCTGAACTCCTCTTAAATGTTGGGTTCTTCTTCTGGTGTGACACAATACTTCTAGCACATGACTCGTGAATACGTCTCACTTAGTTAATTCTTACTTCTTAGTTGCAACTTACCTTGACTAAAAGGACTTTCTGAACCAACAGTAGATATACAACGGTTACGACTTACATATCATGTACCATGTGGGAGCGTAAGAAAATTGTTCTCTCTTTCTTAATAATGTGCAGAAGGTCAAAGGAAATTCGTCATATATCACATTGGTGTGAATAAAAACCTAAGTTCTAAAATTAGAAGAAAATTGTCTTGGTTGTGATGTTACTCCCAGTCTCAGTTATATCGAATCAGCCCCGATAAGGCGCCTAGAACTGGTTTAGCTTTTCCAGTCCCAGGAGCTTTGAGCTGGCTCAACCCCATGGAGATATGGGGATCAATCCTTAGGTAAATATCCAGTTAGGGATGGTCCCACATCCAATTGGGATGGCTCGATGAGCAAGGAAAGCTTTGTGCAAGAATTTTATCAATTTCTTAGATGAAGTAGGATATATAAACGAAAAAACAAACTCAAATTGAGATAAGCCCCTATGGGTTGCCTTGTTTCCACCTTTTTCCTTGTTTCCTCCTTGTCTCGACGAAGTTCTTTATTATGTTTATTTTGTTACTTCTTGTTATCTTGGTAAATGAAATGCTATATGCTTATCCTTTCACATAAATTGTTTGGTGATAAATGTTTTCTTGTTAAGATTATACTATATGACAATAGTATATTTCCTGTTCTGTTCTTCCTACAGGCGTGAAGTGATAGTTACTTCATCTGTTTTAACATGTGAAGCAGTTAAGGTAAATACTTTTTTCTCTGCATTATTTTTCACTCCATGGTTGCACATATTTACTTGCATATACCTTTCAACTTTTCAGGTTATTTGTGCTCTTGTTCTCATGGCAAAAGAAGGCACTTTGAAGAAAATTTACCGGGAGTGGACCTTATTTGGCTCTTTGACTGCATCTGGACTGCCTGCTGCTATTTATGCACTACAAAACAGCTTATTGCAGATCTCATATAAAAATCTTGATTCACTCACGTTTTCAATCTTGAACCAAACAAAACTGTTCTTCACAGCCTTGTTTACTTACATAATTTTAAGGTATGCTTTTTTCGTAACTCATGACCACACAAGTTAGTACGTAGATCCGAAATGTTTTCTATCCGTTGACAGTACTGATCGTTACCACTTTGTCTTAGACTTGTTTTGAAAAGATCATCCACCAAGTGTATGTTTGGTTAACTTTGGCAACCATACTAGTGCTTAGACTGATAGGGTCATTTGGTAACAAGGATAAGGGATTATAATCCCAGGGATAAAACGGGGGTTTTGTGACCTATAGGTCACAAGTTCGAGTTGTGGAATCAAACCACTGATGCTTGTGTCAGGGTAGACTGTCTACACTATAACCCCCTCCCCCCTTGAGATGCGGACTGTGTGAGTGCTGGATTCTTCGTTCACTGGACTGCCCTTTATTATATCTTATGCTAGGTAGAATATTTACTTCCGGGATTAGCTATCTCGAGATATTTTATGCCACAATTGTGATATCATATTTATACCACATTCTATATGGGATAATAAGAAATCCCGGACAAATTTGTTATTAAAAAATGCAACATTTGCCCTTCTCCAAACTTTTCTCCAAAAGACTTTTAAGAAAGCCAAGGTAAGAACTAAAAATTAAAGTTATCCAAGCTATCTAGTTTAAACTAGCCAAATGATTGATATTATACCCTTATATCCCATCTTTTTTCCAATCAACCAATCATCTACTGATAAAAGTATTTCCACTGAATAATCTTGTTGTTATCTGATCCCTGTATTATAATCCCAGAATAACTTGTTTGCAAACCAAATGACCCCTTAGTATCTCAGATACCTGATATGGTAAAATTTATTAGATCATGGCCGTCAAACAGTTCTTGTAAACATTATCTGTTTTCATAAGAACTTTTCGCTTACACATTCTCTGTTTTCGTGCAAGCTGTTCTTACATCATCTGATTCACTTAGCTGGCTAGTTGCTATATTTGTTATCTAAATTAAAATTTTGTGACATTCGAGATCTCTGTGTCGGTACAACCATCTCTTGTTTTAATTTTGATTCCTTAAACAATTTTAGCAATGAACAGTTTGTAGCTGCAATATCCTGCAAGTGTTCTTGTTAGTTACACTAATTGTGTATCAGGTGAATCCTGAGAGCCTTATTACCTCAAAATCCCTTCTTTATTTTCTCAGGCAGAAGCAATCCATTCAACAAATTGGGGCTCTTTTCTTGTTAATCATGGCAGCTGTCCTTTTAAGTGTTGGTGAAGGCTCCAGCAAAGCTTCCAGTAGTAGTAACCCCGATGAGATCTTATTCTATGGAATTGTACCAGTTTTGGTTGCATCTGTGCTTTCTGGTTTGGCATCTGCC</genome_strand>
        <mrna_strand>TTTCAAAGTCATTTGATAAAACGGCGTCGTGTACCTTTCCGACGCCATAGCCAGACAGCATAGAAAGCTTCACGCGAAGCCTTCACCAGTTCGACAACAGCAATAACCGAAGGATCCGATTGAAACAGACCCGATTGTGTGTACACATTTTCGGGTCGACCCGTTATGGCTGCTACGGAATCCAAAAAAGTGAACTCCGAGAACCCGGCGGCGGCAAAAACCGGCGGCAAAGTGTGGTTTTATTCTTTGCTTCTCACTTTACAGTATGGTGCTCAGCCGCTAATATCCAAGCGTTTTGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGAAGTGATAGTTACTTCATCTGTTTTAACATGTGAAGCAGTTAAG..............................................................................GTTATTTGTGCTCTTGTTCTCATGGCAAAAGAAGGCACTTTGAAGAAAATTTACCGGGAGTGGACCTTATTTGGCTCTTTGACTGCATCTGGACTGCCTGCTGCTATTTATGCACTACAAAACAGCTTATTGCAGATCTCATATAAAAATCTTGATTCACTCACGTTTTCAATCTTGAACCAAACAAAACTGTTCTTCACAGCCTTGTTTACTTACATAATTTTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGCAATCCATTCAACAAATTGGGGCTCTTTTCTTGTTAATCATGGCAGCTGTCCTTTTAAGTGTTGGTGAA-GCTCCAGCAAAGCTTCCAGTAGTAGTAACCCCGATGAGATCTTATTCTATGGAATTGTACCAGTTTTGGGTGCATCTGTGCTTTCTGGTTTGGCATCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9207-2" ref_strand="+" ref_description="SGN-M9207-2 C2_At5g65000-2 [cosii_markers]">
      <seq>cttccgacgccatagccaaacagcagagaaagcttcacgcgaagccttcaccagttcgatagcagcaataatcgaaggatccgattggtacagagccgattcgtgtatacatttcgggtcaaccgttatggctgctacggaatccaaaaaagtgaactccgagaacccggcggctgcaaaaaccggcggcaaagtgtggttttattctttgctcctcaccttacagtatggtgctcagccgcttatatccaagcgttttgtcaggcgtgaagtgatagttacttcatctgttttaacatgtgaagcagtcaaggttatttgtgctcttgttctcatggcaaaagaaggcactttgaagaaaaattacagggagtggaccttatttggctctttgactgcatctggactgcctgctgctatctatgcactgcaaaacagcttattgcagatctcatataaaaatcttgattcactcacgttttcaatcttgaaccaaacaaaactgttcttcacagccttgtttacttacataattttgaggcagaagcaatccattcaacaaattggggctcttttcttattaatcatggcagctgtccttttaagtgttggtgagggctccagcaaagcttccagtagtagtaaccccgatgagatcttattctatggaattgtaccagttttggttgcatctgtgctttctgggatggcatctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="10333" stop="5294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10034" g_stop="9768" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9767" i_stop="7265" i_length="2503">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7264" g_stop="7216" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="313" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7215" i_stop="7138" i_length="78">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7137" g_stop="6911" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="540" r_length="227" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6910" i_stop="5772" i_length="1139">
            <donor d_prob="0.946" d_score="0.98"/>
            <acceptor a_prob="0.753" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5771" g_stop="5594" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="718" r_length="178" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-M9207-2" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M9207-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10034" e_stop="9768"/>
          <exon e_start="7264" e_stop="7216"/>
          <exon e_start="7137" e_stop="6911"/>
          <exon e_start="5771" e_stop="5594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCGACGCCATAGCCAGACAGCATAGAAAGCTTCACGCGAAGCCTTCACCAGTTCGACAACAGCAATAACCGAAGGATCCGATTGAAACAGACCCGATTGTGTGTACACATTTTCGGGTCGACCCGTTATGGCTGCTACGGAATCCAAAAAAGTGAACTCCGAGAACCCGGCGGCGGCAAAAACCGGCGGCAAAGTGTGGTTTTATTCTTTGCTTCTCACTTTACAGTATGGTGCTCAGCCGCTAATATCCAAGCGTTTTGTCAGGTTCAATTATACTTCCTTCAATTCAATTTTTTTATCTAATTGTCAGTTTTTTTTTAATTGTAGAATGCAATTTAATTCTCTGAACTAATTAATTTGTATCTCAATTCATGTTGAAGTATGCAAGTTTTTTTTTTTTTGATGTAGTTGTGGTTGTACTGTATACTAAGCATTATATATGTTCGTTCATATTGGTATTTAACGCTAATGAAGATAAGGGAAGAAAATTATCGAAGAATATCTCCGCCTTTACTGGTAATCCAAAGAATTCTTCGAAAAATCATAAAGGATAGAGACTACACACTAATCCTATTTATATACTAGCTAAACAATGTATTTAAGCTAGGTGTGTAGGACCGTGCTCGAAGAGTGAGTCTTACTAATATAAGATTGTCCATGTTGTTGTTGTTAAAGAAAAACAAAAAGTCCCACATCGGTTGTTGGTTAATGAGATGAGTGGAATCCTTATACGGCTCGGGCAAATCCTCCTCCCTTTGAGCTAGCTTTTGGGGTGTGAGTTAGGCTTAAGACCTAATTTCACATGGTATCAGAGCAGGGTCCATCTCAGCTGATGTTGGGGCCCCCAAAATCAAAATTGCCCACACACCAGATGGTAAGCACTAGGCGTGAGGTGGGGTGTTAAAGAATTATAAAAAGTTCCACTCGGTGGTTAATGAGATAGGTGAACTCCTTATAAGGCTTGGGCAATCCTCCTCCTTTTGAGCTAGCTTTTGGGGTGTGAGTTAGACCTAAGACCTAATTTCACAGTTGTCGAATAAGCAAAGGTCTTGCCGTCTTGGAAGCATTTATGGTTTATGGGTACATTTTGAGATTGCATATATACAGATTGATAAACAAGAATGATGGTGAGGTATGTGATTATTAAGAATGGATAATTAGGAGATCATCTTGTGATATTCACATTAGGAGGGCCATCCAAGTTGGGGTCAAGAGGAGATTGAGGATCTTTTCTCAGAAATAGATGATGAGGAAGGAGGGAACAGACCTTATAAAAAAATGATTAGGGAAAGGACGGAGGATTAATAATATCGGGTGGGAGTTAGCAGCAAAGTATGTTATGGTTAAATTGTATTACACGGAGTTGTCAGGTTGGTAGACAAGTCTCAAATGAAGTTGCTTTGTTTGCTTTGGTGTTCTGTACGAGACGCCATCTGATAGTATGAGAAAGAGGAGAATGATATTTGTGAGATGGTGTTGCATGTACAAAGATTTTGGACTCTGGAGACAATTAGGCAGGTTACGAAACTGTGGACCTTTGCATTCTCATTGTTTAGCATGTAGTGGTTGTTACCAACAATAGTAGAGGAATCTATCACCAGCTTGGAGACGAAAGAAAATTGACTGAAAGAAAGCAACACGGGGAACATCATCATTATGTTTTGCTTATGAAATGAAAGAAACAGAAGATTATTTCAGATAATAAGAATGACGAGGAAAGAGTTAAAAGATCATTTTTCTTTCACTTGTATTTTTGGTCTAAAGAAAGAATACCATATTGTACACTTAGTCGGGAAACTCATATATACCTATTGATGACCCAGACTGTTATCTGAACAACTTGTACATACTGTTGACACTTGGTGTGCATTTATCGATTTATCAAATGAAGTACAATATATACAAAATATAAAAATATTGCTGGTCTTGTTCTACTTGCACCATTCTTCATCCTCTTTCTGGTTGAATTCTTGTTGGGAGCTGAACTCCTCTTAAATGTTGGGTTCTTCTTCTGGTGTGACACAATACTTCTAGCACATGACTCGTGAATACGTCTCACTTAGTTAATTCTTACTTCTTAGTTGCAACTTACCTTGACTAAAAGGACTTTCTGAACCAACAGTAGATATACAACGGTTACGACTTACATATCATGTACCATGTGGGAGCGTAAGAAAATTGTTCTCTCTTTCTTAATAATGTGCAGAAGGTCAAAGGAAATTCGTCATATATCACATTGGTGTGAATAAAAACCTAAGTTCTAAAATTAGAAGAAAATTGTCTTGGTTGTGATGTTACTCCCAGTCTCAGTTATATCGAATCAGCCCCGATAAGGCGCCTAGAACTGGTTTAGCTTTTCCAGTCCCAGGAGCTTTGAGCTGGCTCAACCCCATGGAGATATGGGGATCAATCCTTAGGTAAATATCCAGTTAGGGATGGTCCCACATCCAATTGGGATGGCTCGATGAGCAAGGAAAGCTTTGTGCAAGAATTTTATCAATTTCTTAGATGAAGTAGGATATATAAACGAAAAAACAAACTCAAATTGAGATAAGCCCCTATGGGTTGCCTTGTTTCCACCTTTTTCCTTGTTTCCTCCTTGTCTCGACGAAGTTCTTTATTATGTTTATTTTGTTACTTCTTGTTATCTTGGTAAATGAAATGCTATATGCTTATCCTTTCACATAAATTGTTTGGTGATAAATGTTTTCTTGTTAAGATTATACTATATGACAATAGTATATTTCCTGTTCTGTTCTTCCTACAGGCGTGAAGTGATAGTTACTTCATCTGTTTTAACATGTGAAGCAGTTAAGGTAAATACTTTTTTCTCTGCATTATTTTTCACTCCATGGTTGCACATATTTACTTGCATATACCTTTCAACTTTTCAGGTTATTTGTGCTCTTGTTCTCATGGCAAAAGAAGGCACTTTGAAGAAAATTTACCGGGAGTGGACCTTATTTGGCTCTTTGACTGCATCTGGACTGCCTGCTGCTATTTATGCACTACAAAACAGCTTATTGCAGATCTCATATAAAAATCTTGATTCACTCACGTTTTCAATCTTGAACCAAACAAAACTGTTCTTCACAGCCTTGTTTACTTACATAATTTTAAGGTATGCTTTTTTCGTAACTCATGACCACACAAGTTAGTACGTAGATCCGAAATGTTTTCTATCCGTTGACAGTACTGATCGTTACCACTTTGTCTTAGACTTGTTTTGAAAAGATCATCCACCAAGTGTATGTTTGGTTAACTTTGGCAACCATACTAGTGCTTAGACTGATAGGGTCATTTGGTAACAAGGATAAGGGATTATAATCCCAGGGATAAAACGGGGGTTTTGTGACCTATAGGTCACAAGTTCGAGTTGTGGAATCAAACCACTGATGCTTGTGTCAGGGTAGACTGTCTACACTATAACCCCCTCCCCCCTTGAGATGCGGACTGTGTGAGTGCTGGATTCTTCGTTCACTGGACTGCCCTTTATTATATCTTATGCTAGGTAGAATATTTACTTCCGGGATTAGCTATCTCGAGATATTTTATGCCACAATTGTGATATCATATTTATACCACATTCTATATGGGATAATAAGAAATCCCGGACAAATTTGTTATTAAAAAATGCAACATTTGCCCTTCTCCAAACTTTTCTCCAAAAGACTTTTAAGAAAGCCAAGGTAAGAACTAAAAATTAAAGTTATCCAAGCTATCTAGTTTAAACTAGCCAAATGATTGATATTATACCCTTATATCCCATCTTTTTTCCAATCAACCAATCATCTACTGATAAAAGTATTTCCACTGAATAATCTTGTTGTTATCTGATCCCTGTATTATAATCCCAGAATAACTTGTTTGCAAACCAAATGACCCCTTAGTATCTCAGATACCTGATATGGTAAAATTTATTAGATCATGGCCGTCAAACAGTTCTTGTAAACATTATCTGTTTTCATAAGAACTTTTCGCTTACACATTCTCTGTTTTCGTGCAAGCTGTTCTTACATCATCTGATTCACTTAGCTGGCTAGTTGCTATATTTGTTATCTAAATTAAAATTTTGTGACATTCGAGATCTCTGTGTCGGTACAACCATCTCTTGTTTTAATTTTGATTCCTTAAACAATTTTAGCAATGAACAGTTTGTAGCTGCAATATCCTGCAAGTGTTCTTGTTAGTTACACTAATTGTGTATCAGGTGAATCCTGAGAGCCTTATTACCTCAAAATCCCTTCTTTATTTTCTCAGGCAGAAGCAATCCATTCAACAAATTGGGGCTCTTTTCTTGTTAATCATGGCAGCTGTCCTTTTAAGTGTTGGTGAAGGCTCCAGCAAAGCTTCCAGTAGTAGTAACCCCGATGAGATCTTATTCTATGGAATTGTACCAGTTTTGGTTGCATCTGTGCTTTCTGGTTTGGCATCTGCC</genome_strand>
        <mrna_strand>CTTCCGACGCCATAGCCAAACAGCAGAGAAAGCTTCACGCGAAGCCTTCACCAGTTCGATAGCAGCAATAATCGAAGGATCCGATTGGTACAGAGCCGATT-CGTGTATACA-TTTCGGGTC-AACCGTTATGGCTGCTACGGAATCCAAAAAAGTGAACTCCGAGAACCCGGCGGCTGCAAAAACCGGCGGCAAAGTGTGGTTTTATTCTTTGCTCCTCACCTTACAGTATGGTGCTCAGCCGCTTATATCCAAGCGTTTTGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGAAGTGATAGTTACTTCATCTGTTTTAACATGTGAAGCAGTCAAG..............................................................................GTTATTTGTGCTCTTGTTCTCATGGCAAAAGAAGGCACTTTGAAGAAAAATTACAGGGAGTGGACCTTATTTGGCTCTTTGACTGCATCTGGACTGCCTGCTGCTATCTATGCACTGCAAAACAGCTTATTGCAGATCTCATATAAAAATCTTGATTCACTCACGTTTTCAATCTTGAACCAAACAAAACTGTTCTTCACAGCCTTGTTTACTTACATAATTTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGCAATCCATTCAACAAATTGGGGCTCTTTTCTTATTAATCATGGCAGCTGTCCTTTTAAGTGTTGGTGAGGGCTCCAGCAAAGCTTCCAGTAGTAGTAACCCCGATGAGATCTTATTCTATGGAATTGTACCAGTTTTGGTTGCATCTGTGCTTTCTGGGATGGCATCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M4641-2" ref_strand="+" ref_description="SGN-M4641-2 C2_At1g10500-2 [cosii_markers]">
      <seq>aaaaatgatcacaattcaactagcacgtatgaataagccataaataaattatagaactgaaaattaaaaaaaaaaaattatcaattgtgtgatttgcaggtaacaatggcgttctctgcaactcttcgatgttcatcttctctacaccgcccttcgaagaattcaacaatttcaagcgttttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgtctattcgatctgctacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggagtttgaaaagcgagaaaatgctagaccagacgattcaatcatcgagtacaatggatttgttattgtttgtgatccaaaaagccttctcttcatcttcggaatgcaactggactacagcgatgcattgataggcgggggcttctctttcaaaaatccaaacgctacgcaaacttgtggttgtggaaaatcgtttactgctgagatgtaagagcatgcagtcttagaaatgtactacaaaattaacatactagaacaccaactgtggtttgcttggttctctgaatatagacagagacagtaatgaagatctgttaactcatattatgtgcataagggactgtaacgtttaaatatgtgtaactgggaatgcattatattcttcctgcacaaaatacaaaacatctatgccatgtcgttttatgcttcgtgaggcagagccgcaatgtaacgtgtgggttcatgtaaactcaatagttttgtgttggatcttgtatatgtatttttaaaatattattaaatttatgaaagattgtgaactcggttattattataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="88657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93208" g_stop="92935" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="493" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="88964" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="979" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="980" polyA_stop="992"/>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-M4641-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>979</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M4641-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93208" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="88964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGATCACAATTCAACTAGCACGTATGAATAAGCCATAAATAAATTATAGAACTGAAAATTAAAAAAAAAAAATTATCAATTGTGTGATTTGCAGGTAACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCGGTTATTATTAT</genome_strand>
        <mrna_strand>AAAAATGATCACAATTCAACTAGCACGTATGAATAAGCCATAAATAAATTATAGAACTGAAAATTAAAAAAAAAAAATTATCAATTGTGTGATTTGCAGGTAACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCGGTTATTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1571" ref_strand="+" ref_description="SGN-M1571 T0730 [cos_markers]">
      <seq>ttctctgcaactcttcgatggtcatgttgtctacaccgcccttcgaagaattcaacaatttcaagcgtgttgcctcaatcatcttcttcaatctcctttcgatcttcgccttcgttttttaatcgcaaaaaatcattgcctattcgatctggtacacttgaagcagcacctgcatctggaggagtagcacctgcaatttccttaactgacaatgcattaatgcacttgaataaaatgaggagtgatcggaatgaggacttgtgtcttagaattggcgttaaacaagggggatgctcgggaatgtcatacactatggattttgaaaagcgagaaaatgctataccagacgattcaatcatcgagtacactggatcggttattgcttgcgatccaaaaagcctcctcttcatcttcggaatgcaactggactacagcgatgcatggataggcgggggcttctctttcaaaaatccaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0135A02-u0i1j/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C05HBa0135A02.3" temp_strand="-" temp_description="C05HBa0135A02.3  AC212274.2 htgs_phase:3 submitted_to_sgn_as:C05HBa0135A02 sequenced_by:iari upload_account_name:india-iari submitted_to_sgn_as: C05HBa0135A02">
        <position start="93265" stop="89054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93097" g_stop="92935" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90406" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="382" r_length="219" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.720" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89449" g_stop="89354" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="478" r_length="96" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0135A02.3" gen_strand="-" ref_id="SGN-M1571" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0135A02.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93097" e_stop="92935"/>
          <exon e_start="90624" e_stop="90406"/>
          <exon e_start="89449" e_stop="89354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAGGTAATCGTTTACCTACTTCAATTTTGGTTCAATGAATTGAAACGAAATCAAAATTGCTTAGGATTTGATGATTTTTCAGTTTGTTTAATTTATGTTTGATTTAGATTTTTAGATTTGTAGTTAAAATTATACGGGGATAGGTTTTCTAGTTTCTGTTAGAGTAGGTATTGAGCTATTTTTTGTATCGAAGAAGAGTAGAGAGAAAAATTGTAGTGGTGAGTAAATTATTTACCTTCTCTCAAAGCCGAGTAAGGATTTAAAGTTTATGAGTTTGGGATTCTAGTGAGTTCTAAATTTATAATTTGTACATATTTAATGAATTTTGTAGGGAAAAAAAGGTTGTACTTTGCGGAACCTGTATGACTTGCTCTAGCTCCACCCATGCCTTCGCTATTTATTTGGGTTTTGCTAAGTATAATTGATTGGAAGGATAGAGGAGGAGATTTGTGGTGTGTTTATGCTTAGAGTTGAATTAGTTAAGATTAGTTAAATTGTGGTATATTATCTGAATAGTGAATGATATAGGAGATTTGTATTGGCTATCTTGGGTTTGAGGAGTAGTTGATTTGTTGATTATAGTAAATACGAAGGATATAAGCTGTAATTCTTTGATTGATTATGCTTGAAGGAAGAAAGAAGAGGACTTTTGTAAGCTATGAAGAGCAGCTGAGCTTTGTCTGTTGCTAGTAGCGAATACGTTGTAAATTTCTATTGAATTAAAATCTCACCCTTGAACGGTGTGATTTGTCCCAAAATAAGCCTTGGAAATGATAGTTGTTGTGTGAAAACTTGGGTTTAAGACATTGTCCTGACAGTAATATACTGCAATAGCTGAAATTGGATGACATTAGTTTTTTTTTCTTGCTTTAGAGGTCATTTGTGAAAGTATTTTCCTAGATGGACTGTACATGATGGCTCTTTTCGTCACTTGATTGGTTACTAGCTAACATAAACATTACCCTTTTGGAAAGAGAAAAAACAAGTACCTAGGTTTGATAGTGTTTGGACATTTTAAAGTGAATCTGTGCCTGTAAACAGTCTGGAATTCAGGAGAGATTGTTTGGCTGATTTTTGAGTAGTCCGAGTCAAACTTCTCAGCGAGATACTTTGATATTTTTCCTGGTGAAGAACACTAATTTTTACATAACATTTAGAAATAGATCAAAAATTGAAAATTTAAAATATAAAATATATAGATGAAAATTGAATATAATAGAAAAGATGCACAAATATTGTTTTAACTATCTAGTCAGATTAATACGTGTACATTATGTGAGAACTCTTTGGAAAAGTAACTGTTCAAGGTACTTTGAGGAAGGTCTATGACCTGTTTCCAGATTAACCAAACTTTTTGAATACTGTAGCACACGCTTGGGAGAATTTGAATGTTTCGCTTCATAAACGTGTATCAGGATGATTCAGATGATATGCTTTCTTTTCACTTTCCATCATTTAAGATAAGAAGCTGTTTAAAGAAGGTTAAGTGCAATTGGGAAGAATTGATCAGCTATGATCACCTTGTTTGAATTTAACTGGTTTTTCTGTTACCTCAATTCTAAAATAAGAAAATTGGATTTTGGGTCAATGAAGTGATGAGGAAGTTGATATGAAACGGCTGGTAGCAGAATGTCTCACTAAAACCATCATAAAGGAGGTCAAGGGCCTCAAGGCTTGTATTTGTCTGTTTATATCTTCTGTGCTTAAAACAAGGATGATTTTACTGCGTTTGTACCTTCCATTCATTGAAAGAAAACCATGTGGTGCTTTTCAGGGCACTTAACTTTAACAGCAGGGAATATAAACAGTCTAATAATAACATCAAGAAACTTTGGGATGTGGGAGTAGAGCCTGAATGGAACATTCTCATTTGTCAAATGAACTTTTAATAAATTACTGCAGCCTCTTTTGACACAAGATAACCTTTGGAAATATTCATGGATTACGACTATAAAATGTATATACTATATGAGAAATATTCATACATTATGTTTACATTTTACGAAGCTTAAACGGAACTCTACTTCTGTCCAAATTATAATTGCTCTTACTTTAACAAAGGATGTATTTTAGTTATAATCTTCTTTCAGGGTTTTACGTCTTTTATAATATGACCTTTTGAACTCTAACTTAGTTTATCTAGAATAACTAAATCACTTTTTTTTTCAGAGTGAGAAATAGTTAAAGTTACTTTCAAGAAACAAACCGTGCCACCTTTAGTTAGGCTGAAGTAATAGTTAAAGCACAACGTTGACGTTATTACAGGCGATCTCTCTTGGCTCTGATAAGTTGCTTTGGTTCTGATATATGCAGCAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTGGTATGTGTGGATTTAATTTCTCATTTTCTAACATGACAGTCTTGGTTTCTTTTGCCAGAGAATGAATATCTTTTCACACCAAATTTAGAGCAAATTTGCAGTTAATCTCCGTTGGATCTGTGTTCTTCTGCAAACCTTAACTCCTTAGCATGGAAGAAAAATAAATTCAGTGAAACAACCATACTTGTGTTAATCATGATACTCAACCTTCACTTTAGTTGATGAGATAAGTTAGTTGTGTTCATTTAATGAAAAGACAATAAGATAAGTAAAAGGAAGTATGGATTGAGTGATTAGTTGGCGTGATAGATAAAAGAGGTGATAGATGCATTAGCAATTTAATGTGATGACCTCCATATAAATTAAAGTTCAAAGAGTTTACAGGTTTTAACAGTCTTGTGGGGAAATAGATAGGGGAAATCACTGCTCAAATGAAGTACAACTTTGCTATATAAACAACTTATGGAGTTTCACTTCACATCTCCATTGAAATTTTCACCGAGCCTGTGCATAACGGGAGCTTAGTGCACTGGGCTGCCCTTTCTTTTCCGTTGAAGTTTTACTCTCGGGGATCTATCTACTCTTCATACCTCAAAACTTGTGTGCTCTGTAAAGTTTGCTTCATTGATTAACTGATGCCGCTTGTGGTGTAAAAATTACCTATATTTAGCTCTTGTATGCTTCTAAAGCTAGCAGTCATACCCATCTACTTAGATTAGTTCACTTTGAGACGAATTTTAATACCCTTGATTCAGTAAGTTCCCCTTGCCCATTGTGTGGCGTTTTTTACTCATGAAGTAGTTAAAGCTTTTAGTGTTGGGTCCATACAAGAAACCAGTACTATTTCACTCTTATATTTGTAAGTTATGCGTGCTAGCTACTTGTTTCTGTTTTCTTTTCGAGTGATTATTGACATTTAAATAAGAAATTTTTGTTGCATCAACCCTTTCTTTCAGTTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACG</genome_strand>
        <mrna_strand>TTCTCTGCAACTCTTCGATGGTCATGTTGTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTGTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGCCTATTCGATCTGGTACACTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGATTTTGAAAAGCGAGAAAATGCTATACCAGACGATTCAATCATCGAGTACACTGGATCGGTTATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCGATCCAAAAAGCCTCCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATGGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="10069" PGL_stop="5594"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10069" e_stop="9768"/>
            <exon e_start="7264" e_stop="7216"/>
            <exon e_start="7137" e_stop="6911"/>
            <exon e_start="5771" e_stop="5594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.753" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10069" e_stop="9768" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="9767" i_stop="7265" i_length="2503"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7264" e_stop="7216" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="7215" i_stop="7138" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7137" e_stop="6911" e_length="227"/>
          </exon>
          <intron i_serial="3" don_prob="0.946" acc_prob="0.753">
            <gDNA_intron_boundary i_start="6910" i_stop="5772" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="5771" e_stop="5594" e_length="178"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10069" stop="9768"/>
              <exon start="7264" stop="7216"/>
              <exon start="7137" stop="6911"/>
              <exon start="5771" stop="5594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10034" stop="9768"/>
              <exon start="7264" stop="7216"/>
              <exon start="7137" stop="6911"/>
              <exon start="5771" stop="5594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9207-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAAAGTCATTTGATAAAACGGCGTCGTGTACCTTTCCGACGCCATAGCCAGACAGCATAGAAAGCTTCACGCGAAGCCTTCACCAGTTCGACAACAGCAATAACCGAAGGATCCGATTGAAACAGACCCGATTGTGTGTACACATTTTCGGGTCGACCCGTTATGGCTGCTACGGAATCCAAAAAAGTGAACTCCGAGAACCCGGCGGCGGCAAAAACCGGCGGCAAAGTGTGGTTTTATTCTTTGCTTCTCACTTTACAGTATGGTGCTCAGCCGCTAATATCCAAGCGTTTTGTCAG : GCGTGAAGTGATAGTTACTTCATCTGTTTTAACATGTGAAGCAGTTAAG : GTTATTTGTGCTCTTGTTCTCATGGCAAAAGAAGGCACTTTGAAGAAAATTTACCGGGAGTGGACCTTATTTGGCTCTTTGACTGCATCTGGACTGCCTGCTGCTATTTATGCACTACAAAACAGCTTATTGCAGATCTCATATAAAAATCTTGATTCACTCACGTTTTCAATCTTGAACCAAACAAAACTGTTCTTCACAGCCTTGTTTACTTACATAATTTTAAG : GCAGAAGCAATCCATTCAACAAATTGGGGCTCTTTTCTTGTTAATCATGGCAGCTGTCCTTTTAAGTGTTGGTGAAGGCTCCAGCAAAGCTTCCAGTAGTAGTAACCCCGATGAGATCTTATTCTATGGAATTGTACCAGTTTTGGTTGCATCTGTGCTTTCTGGTTTGGCATCTGCC</gDNA_template>
            <first_frame> F  Q  S  H  L  I  K  R  R  R  V  P  F  R  R  H  S  Q  T  A  *  K  A  S  R  E  A  F  T  S  S  T  T  A  I  T  E  G  S  D  *  N  R  P  D  C  V  Y  T  F  S  G  R  P  V  M  A  A  T  E  S  K  K  V  N  S  E  N  P  A  A  A  K  T  G  G  K  V  W  F  Y  S  L  L  L  T  L  Q  Y  G  A  Q  P  L  I  S  K  R  F  V  R :   R  E  V  I  V  T  S  S  V  L  T  C  E  A  V  K  :  V  I  C  A  L  V  L  M  A  K  E  G  T  L  K  K  I  Y  R  E  W  T  L  F  G  S  L  T  A  S  G  L  P  A  A  I  Y  A  L  Q  N  S  L  L  Q  I  S  Y  K  N  L  D  S  L  T  F  S  I  L  N  Q  T  K  L  F  F  T  A  L  F  T  Y  I  I  L  R :   Q  K  Q  S  I  Q  Q  I  G  A  L  F  L  L  I  M  A  A  V  L  L  S  V  G  E  G  S  S  K  A  S  S  S  S  N  P  D  E  I  L  F  Y  G  I  V  P  V  L  V  A  S  V  L  S  G  L  A  S  A </first_frame>
            <second_frame>  F  K  V  I  *  *  N  G  V  V  Y  L  S  D  A  I  A  R  Q  H  R  K  L  H  A  K  P  S  P  V  R  Q  Q  Q  *  P  K  D  P  I  E  T  D  P  I  V  C  T  H  F  R  V  D  P  L  W  L  L  R  N  P  K  K  *  T  P  R  T  R  R  R  Q  K  P  A  A  K  C  G  F  I  L  C  F  S  L  Y  S  M  V  L  S  R  *  Y  P  S  V  L  S   : G  V  K  *  *  L  L  H  L  F  *  H  V  K  Q  L  R :   L  F  V  L  L  F  S  W  Q  K  K  A  L  *  R  K  F  T  G  S  G  P  Y  L  A  L  *  L  H  L  D  C  L  L  L  F  M  H  Y  K  T  A  Y  C  R  S  H  I  K  I  L  I  H  S  R  F  Q  S  *  T  K  Q  N  C  S  S  Q  P  C  L  L  T  *  F  *   : G  R  S  N  P  F  N  K  L  G  L  F  S  C  *  S  W  Q  L  S  F  *  V  L  V  K  A  P  A  K  L  P  V  V  V  T  P  M  R  S  Y  S  M  E  L  Y  Q  F  W  L  H  L  C  F  L  V  W  H  L   </second_frame>
            <third_frame>   S  K  S  F  D  K  T  A  S  C  T  F  P  T  P  *  P  D  S  I  E  S  F  T  R  S  L  H  Q  F  D  N  S  N  N  R  R  I  R  L  K  Q  T  R  L  C  V  H  I  F  G  S  T  R  Y  G  C  Y  G  I  Q  K  S  E  L  R  E  P  G  G  G  K  N  R  R  Q  S  V  V  L  F  F  A  S  H  F  T  V  W  C  S  A  A  N  I  Q  A  F  C  Q  :  A  *  S  D  S  Y  F  I  C  F  N  M  *  S  S  *   : G  Y  L  C  S  C  S  H  G  K  R  R  H  F  E  E  N  L  P  G  V  D  L  I  W  L  F  D  C  I  W  T  A  C  C  Y  L  C  T  T  K  Q  L  I  A  D  L  I  *  K  S  *  F  T  H  V  F  N  L  E  P  N  K  T  V  L  H  S  L  V  Y  L  H  N  F  K  :  A  E  A  I  H  S  T  N  W  G  S  F  L  V  N  H  G  S  C  P  F  K  C  W  *  R  L  Q  Q  S  F  Q  *  *  *  P  R  *  D  L  I  L  W  N  C  T  S  F  G  C  I  C  A  F  W  F  G  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0135A02.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9946" stop="9768"/>
                    <exon start="7264" stop="7216"/>
                    <exon start="7137" stop="6911"/>
                    <exon start="5771" stop="5594"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRPDCVYTFSGRPVMAATESKKVNSENPAAAKTGGKVWFYSLLLTLQYGAQPLISKRFVRREVIVTSSVLTCEAVKVICALVLMAKEGTLKKIYREWTLFGSLTASGLPAAIYALQNSLLQISYKNLDSLTFSILNQTKLFFTALFTYIILRQKQSIQQIGALFLLIMAAVLLSVGEGSSKASSSSNPDEILFYGIVPVLVASVLSGLASA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="93208" PGL_stop="88964"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93208" e_stop="92935"/>
            <exon e_start="90624" e_stop="90406"/>
            <exon e_start="89449" e_stop="88964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.720" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93208" e_stop="92935" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.981">
            <gDNA_intron_boundary i_start="92934" i_stop="90625" i_length="2310"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90624" e_stop="90406" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.720">
            <gDNA_intron_boundary i_start="90405" i_stop="89450" i_length="956"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89449" e_stop="88964" e_length="486"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93208" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="88964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4641-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93097" stop="92935"/>
              <exon start="90624" stop="90406"/>
              <exon start="89449" stop="89354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1571" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATGATCACAATTCAACTAGCACGTATGAATAAGCCATAAATAAATTATAGAACTGAAAATTAAAAAAAAAAAATTATCAATTGTGTGATTTGCAGGTAACAATGGCGTTCTCTGCAACTCTTCGATGTTCATCTTCTCTACACCGCCCTTCGAAGAATTCAACAATTTCAAGCGTTTTGCCTCAATCATCTTCTTCAATCTCCTTTCGATCTTCGCCTTCGTTTTTTAATCGCAAAAAATCATTGTCTATTCGATCTGCTACACTTGAAG : CAGCACCTGCATCTGGAGGAGTAGCACCTGCAATTTCCTTAACTGACAATGCATTAATGCACTTGAATAAAATGAGGAGTGATCGGAATGAGGACTTGTGTCTTAGAATTGGCGTTAAACAAGGGGGATGCTCGGGAATGTCATACACTATGGAGTTTGAAAAGCGAGAAAATGCTAGACCAGACGATTCAATCATCGAGTACAATGGATTTGTTATTG : TTTGTGATCCAAAAAGCCTTCTCTTCATCTTCGGAATGCAACTGGACTACAGCGATGCATTGATAGGCGGGGGCTTCTCTTTCAAAAATCCAAACGCTACGCAAACTTGTGGTTGTGGAAAATCGTTTACTGCTGAGATGTAAGAGCATGCAGTCTTAGAAATGTACTACAAAATTAACATACTAGAACACCAACTGTGGTTTGCTTGGTTCTCTGAATATAGACAGAGACAGTAATGAAGATCTGTTAACTCATATTATGTGCATAAGGGACTGTAACGTTTAAATATGTGTAACTGGGAATGCATTATATTCTTCCTGCACAAAATACAAAACATCTATGCCATGTCGTTTTATGCTTCGTGAGGCAGAGCCGCAATGTAACGTGTGGGTTCATGTAAACTCAATAGTTTTGTGTTGGATCTTGTATATGTATTTTTAAAATATTATTAAATTTATGAAAGATTGTGAACTCGGTTATTATTAT</gDNA_template>
            <first_frame> K  N  D  H  N  S  T  S  T  Y  E  *  A  I  N  K  L  *  N  *  K  L  K  K  K  N  Y  Q  L  C  D  L  Q  V  T  M  A  F  S  A  T  L  R  C  S  S  S  L  H  R  P  S  K  N  S  T  I  S  S  V  L  P  Q  S  S  S  S  I  S  F  R  S  S  P  S  F  F  N  R  K  K  S  L  S  I  R  S  A  T  L  E   : A  A  P  A  S  G  G  V  A  P  A  I  S  L  T  D  N  A  L  M  H  L  N  K  M  R  S  D  R  N  E  D  L  C  L  R  I  G  V  K  Q  G  G  C  S  G  M  S  Y  T  M  E  F  E  K  R  E  N  A  R  P  D  D  S  I  I  E  Y  N  G  F  V  I   : V  C  D  P  K  S  L  L  F  I  F  G  M  Q  L  D  Y  S  D  A  L  I  G  G  G  F  S  F  K  N  P  N  A  T  Q  T  C  G  C  G  K  S  F  T  A  E  M  *  E  H  A  V  L  E  M  Y  Y  K  I  N  I  L  E  H  Q  L  W  F  A  W  F  S  E  Y  R  Q  R  Q  *  *  R  S  V  N  S  Y  Y  V  H  K  G  L  *  R  L  N  M  C  N  W  E  C  I  I  F  F  L  H  K  I  Q  N  I  Y  A  M  S  F  Y  A  S  *  G  R  A  A  M  *  R  V  G  S  C  K  L  N  S  F  V  L  D  L  V  Y  V  F  L  K  Y  Y  *  I  Y  E  R  L  *  T  R  L  L  L  </first_frame>
            <second_frame>  K  M  I  T  I  Q  L  A  R  M  N  K  P  *  I  N  Y  R  T  E  N  *  K  K  K  I  I  N  C  V  I  C  R  *  Q  W  R  S  L  Q  L  F  D  V  H  L  L  Y  T  A  L  R  R  I  Q  Q  F  Q  A  F  C  L  N  H  L  L  Q  S  P  F  D  L  R  L  R  F  L  I  A  K  N  H  C  L  F  D  L  L  H  L  K  :  Q  H  L  H  L  E  E  *  H  L  Q  F  P  *  L  T  M  H  *  C  T  *  I  K  *  G  V  I  G  M  R  T  C  V  L  E  L  A  L  N  K  G  D  A  R  E  C  H  T  L  W  S  L  K  S  E  K  M  L  D  Q  T  I  Q  S  S  S  T  M  D  L  L  L  :  F  V  I  Q  K  A  F  S  S  S  S  E  C  N  W  T  T  A  M  H  *  *  A  G  A  S  L  S  K  I  Q  T  L  R  K  L  V  V  V  E  N  R  L  L  L  R  C  K  S  M  Q  S  *  K  C  T  T  K  L  T  Y  *  N  T  N  C  G  L  L  G  S  L  N  I  D  R  D  S  N  E  D  L  L  T  H  I  M  C  I  R  D  C  N  V  *  I  C  V  T  G  N  A  L  Y  S  S  C  T  K  Y  K  T  S  M  P  C  R  F  M  L  R  E  A  E  P  Q  C  N  V  W  V  H  V  N  S  I  V  L  C  W  I  L  Y  M  Y  F  *  N  I  I  K  F  M  K  D  C  E  L  G  Y  Y  Y </second_frame>
            <third_frame>   K  *  S  Q  F  N  *  H  V  *  I  S  H  K  *  I  I  E  L  K  I  K  K  K  K  L  S  I  V  *  F  A  G  N  N  G  V  L  C  N  S  S  M  F  I  F  S  T  P  P  F  E  E  F  N  N  F  K  R  F  A  S  I  I  F  F  N  L  L  S  I  F  A  F  V  F  *  S  Q  K  I  I  V  Y  S  I  C  Y  T  *  S :   S  T  C  I  W  R  S  S  T  C  N  F  L  N  *  Q  C  I  N  A  L  E  *  N  E  E  *  S  E  *  G  L  V  S  *  N  W  R  *  T  R  G  M  L  G  N  V  I  H  Y  G  V  *  K  A  R  K  C  *  T  R  R  F  N  H  R  V  Q  W  I  C  Y  C :   L  *  S  K  K  P  S  L  H  L  R  N  A  T  G  L  Q  R  C  I  D  R  R  G  L  L  F  Q  K  S  K  R  Y  A  N  L  W  L  W  K  I  V  Y  C  *  D  V  R  A  C  S  L  R  N  V  L  Q  N  *  H  T  R  T  P  T  V  V  C  L  V  L  *  I  *  T  E  T  V  M  K  I  C  *  L  I  L  C  A  *  G  T  V  T  F  K  Y  V  *  L  G  M  H  Y  I  L  P  A  Q  N  T  K  H  L  C  H  V  V  L  C  F  V  R  Q  S  R  N  V  T  C  G  F  M  *  T  Q  *  F  C  V  G  S  C  I  C  I  F  K  I  L  L  N  L  *  K  I  V  N  S  V  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0135A02.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93148" stop="92935"/>
                    <exon start="90624" stop="90406"/>
                    <exon start="89449" stop="89307"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLKKKNYQLCDLQVTMAFSATLRCSSSLHRPSKNSTISSVLPQSSSSISFRSSPSFFNRKKSLSIRSATLEAAPASGGVAPAISLTDNALMHLNKMRSDRNEDLCLRIGVKQGGCSGMSYTMEFEKRENARPDDSIIEYNGFVIVCDPKSLLFIFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFTAEM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 33 chains have been computed
$ 
$ memory statistics:
$ 8096 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2024 bytes was the average size of a spliced alignment
$ 6864 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3432 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 33 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:23:29
-->
