<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2010-02-05 14:31:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E438012" ref_strand="+" ref_description="SGN-E438012 [cSTA-5-H22]">
      <seq>cgccactgtaaccgtagccggcggtaacttcaaccttactccggcgatctacacttccgtttccggcctcactgttacctttctgccgacggagtattttccattttgccatcaatggcgctacagagacaacctagtgatctgaaaaacagagtgaatacttgtctcaatagattatctgaccgtgatactctcactgttgctacgaatgagctggagtctatagctaggagtcttaacagtgaaggttttggtgcatttttgacttgtatttcgagtacggactcttccgataaatcaccggtgcgtcggcaatgtgttcggcttatcggcgtactctcagcgtctcacggagatgctttatcaccgcatctagcgaaaatgctttctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="13677" stop="14668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13977" g_stop="14368" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E438012" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13977" e_stop="14368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCACTGTAACCGTCGCCGGCGGTAACATCAACCTTACTCCGGCGATCTACAGTACTGTTCCCGGCCTCACTATTATC-TCCTGCCGACGGGATATCTTCCATTTTGCCATCAATGGCGCTACAGAGACAACCTAGTGATCTGAAAAACAGAGTGAATACTTGTCTCAATAGATTGTCCGACCGTGATACTCTCGCCGTTGCTACGAATGAGCTGGAGTCTATAGTTAGAAGTCTTAACAGTGAAGGTTTTAGTGCATTTTTGACTTGTATTTCGAGTACGGACTCTTCCGATAAATCGCCGGTGCGTCGGCAATGTGTTCGGCTTATCGGAGTTCTCTCAGCAACTCACGGAGATGCTTTATCACCGCATCTAGCGAAAATGCTTTCTACT</genome_strand>
        <mrna_strand>CGCCACTGTAACCGTAGCCGGCGGTAACTTCAACCTTACTCCGGCGATCTACACTTCCGTTTCCGGCCTCACTGTTACCTTTCTGCCGACGGAGTATTTTCCATTTTGCCATCAATGGCGCTACAGAGACAACCTAGTGATCTGAAAAACAGAGTGAATACTTGTCTCAATAGATTATCTGACCGTGATACTCTCACTGTTGCTACGAATGAGCTGGAGTCTATAGCTAGGAGTCTTAACAGTGAAGGTTTTGGTGCATTTTTGACTTGTATTTCGAGTACGGACTCTTCCGATAAATCACCGGTGCGTCGGCAATGTGTTCGGCTTATCGGCGTACTCTCAGCGTCTCACGGAGATGCTTTATCACCGCATCTAGCGAAAATGCTTTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456583" ref_strand="+" ref_description="SGN-E456583 [cSTS-29-P6]">
      <seq>attcgcagatcggagcttcgctttgccttgctgcggcaattgaagcatcacctgatcctgagccggcggagctgaagaaaatgttgtcgaagctcatgaaattggtgaagaatgattcctttaaagccaaaccggcgttgctgtcgctcattagtagtattgttagtgttggtggtgcttccaataagagtgtattgaatagcttggttccaattacagctgagttgttgagtagtgaagattggactgtgcggaaggctgcggcggagacattgggacggttggctgtttccgagaaagagttgttgtcagagttgaaggcgttctgcatcacgtcattggataacagaagattcgataaggtgaaggttgtgagagagacgatgaatcgggcgttagaatggtggaaggaagttccaggtgcttcagatgatgttttgcctcaattacaatccaagtttccacagaaagattgtgttagtggtgcctgttctccaactccttccaaaagttcgagtgatacagctacggaaacccctcagccgaagaaagcaatccgctcaaccaagtcacttgcatccagtagttcttcctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="14217" stop="16553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14517" g_stop="14878" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14879" i_stop="15071" i_length="193">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15072" g_stop="15180" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="471" r_length="109" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15181" i_stop="16128" i_length="948">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16129" g_stop="16253" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="596" r_length="125" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E456583" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14517" e_stop="14878"/>
          <exon e_start="15072" e_stop="15180"/>
          <exon e_start="16129" e_stop="16253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGCAGATCGGAGCTTCGCTTTGCCTTGCTGCGGCAATTGAAGCATCACCTGATCCTGAGCCGGCGGAGCTGAAGAAAATACTGTCGAAGCTCATGAAATTGGTGAAGAATGATAGCTTCAAAGCCAAACCGGCCTTGCTGTCGCTCATTGGTAGTATTGTTAGTGTTGGTGGTGCTTCAAATAAGAATGTATTGAATAGCTTGGTTCCGATTACGGCTGAGTTGTTGAGTAGTGAAGATTGGACTGTGCGGAAGGCCGCGGCGGAGACATTGGGACGGTTGGCTGTTTCCGAGAAAGAATTGTTGTCAGAGTTGAAGGCGTTCTGCATCACGTCATTGGATAACCGAAGATTCGATAAGGTACAAAATACATGACCTACAGTAAATCTGATTTGCCATATAGTTTAGAAATGATTGAAAGGAGAACTTCATTACCTTTTGTCATTTATTTTTGAAATGGCGTGTAATAGACTACGGATTTTATCCTAATCTAAAATCTTATAAATTTAATAAAAAGAATTGGCTTATAGAATACTCTACTTTGACTCTATAGGTGAAGGTTGTTAGAGAGACAATGAATCGGGCGTTAGAATGGTGGAAGGAAGTTCCAGGTACTTCAGATGATGTTTTGCCTCAATTACAATCCAAGTTTCCACATAAAGGTAACTTCCAATAAAAGCTAATCCGTTCTGTTGAAATAATTTTATTCTTTTAGAAAAGCTTGTGGTTTAAATAATATTTGGATTTCCCTAGTTTTCATGTGTTATTACTATGTTCTGTCAATGATTTACATGGAGATGAGAGGATTCAAAAATAGCTAGTCATGTTAAGAAAGAGCATGTATTAGTATTCAAATTGGATTTAGTTTCGAGTTTGTTAGAAAATCTATGTTAACACAAGTTCCCTTGAATGTTGATTGAGTGAAGTAGAATCTGAATTCCTCAACACTGCTAAAATGGAAATATTAGCTCAAAATGAAGCTTAGTGAAGATTGTCTAACATAGGGTGTTAGTTTTTTTTTTGATGGCGAGAGAATTATCTTCTGGCCAGTATGGTTGCATATAGGGAGATGGACTTTTTACTATTTGACCTGCAGAAATTAAAATTTGTGAACTCCTTTTCTTCCTTAAAGTTCTTTTTCTAGTTTTTATGTTCTCCAGAATCCAGACAAAACACTTGTTTTTTCTGATTGATCATCACATGCTATACACATGGTTAGAAACTTATCTTGTCAGATGAGTCCAGGTCCAGGGAATCTTGGACTTTAATTAACCCTTAGTTTCCATACTTCCAGTTCCATTGAGTGAAAATTACAGTCCTTTTAGTAACTAAACTATTTCAGCCACATCTGCATCATAATTACCTCGTTCCAACTTTGGTTATAGTGAGCTTTCGTGCTAGTTGCATCTTTGTCTCTTGTCCTTATTGCTACTTTTATGTCAGCTGTTACACAATTGTATGCCATGTTTCTACTAGTAATTGCCATGGATTCTTCCTATTTTCATCTTTAAGCTCTTATTGTAAATGCATAACTCTATTCACCTACATTCTGCTACTAAAATTATCCTATGAGGTGCCATATTTACAGAACTATGAATTTGTGTCTCCAGATTGTATTAGTGGTGCCTGTTCTCCAACTCCTTCCAAAAGTTCGAGTGATACAGCTATGGAAACCCCTCAGCCGAAGAAAGCAATCCGCTCAACTAAGTCACTTGCATCCAGTAGTTCTTCCTCG</genome_strand>
        <mrna_strand>ATTCGCAGATCGGAGCTTCGCTTTGCCTTGCTGCGGCAATTGAAGCATCACCTGATCCTGAGCCGGCGGAGCTGAAGAAAATGTTGTCGAAGCTCATGAAATTGGTGAAGAATGATTCCTTTAAAGCCAAACCGGCGTTGCTGTCGCTCATTAGTAGTATTGTTAGTGTTGGTGGTGCTTCCAATAAGAGTGTATTGAATAGCTTGGTTCCAATTACAGCTGAGTTGTTGAGTAGTGAAGATTGGACTGTGCGGAAGGCTGCGGCGGAGACATTGGGACGGTTGGCTGTTTCCGAGAAAGAGTTGTTGTCAGAGTTGAAGGCGTTCTGCATCACGTCATTGGATAACAGAAGATTCGATAAG.................................................................................................................................................................................................GTGAAGGTTGTGAGAGAGACGATGAATCGGGCGTTAGAATGGTGGAAGGAAGTTCCAGGTGCTTCAGATGATGTTTTGCCTCAATTACAATCCAAGTTTCCACAGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGTTAGTGGTGCCTGTTCTCCAACTCCTTCCAAAAGTTCGAGTGATACAGCTACGGAAACCCCTCAGCCGAAGAAAGCAATCCGCTCAACCAAGTCACTTGCATCCAGTAGTTCTTCCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371265" ref_strand="+" ref_description="SGN-E371265 [TUS-27-C15]">
      <seq>aaaatcaaatgttacgagctcctgtaagctggattttagaaaatcccctgatgcaaaagcaaagcacactgtttcacaggcttcttcgttggaggtagcttgtgaagaacagaagagtcaaaattttagagttcaaggttcagtggattcagtgagttgtagcagttcaaactcagaagcaaagtcaactctattcaacagaccaccggatgagaagttccacagatatggtaattcacagtttggatctcgggttattccactctttgaggactacaatgacaacatggatgtacctgctgaggacatcaacgaagatgcattcttgagtcatagagagtacgagaatttctgttctgtcagcaaacagcttgttcagattgaaaatcaacagtccagtttgttagacctcctgcagggatttattggcagctcacgacatggaatgaattccttagagaaacgtgtaaatggtttggagagattacttgatgaaatgcaatatgatttggcaataacaacagggaggatttcagatactgattttacaggaagtacatgcagcatgatccctcgtgcagaatttttgggtcctaagttttggagaagtccagaaaggcaaaactcacaatcaagaatatccttctcaactggaagccaggatgtagcgtatagtccatcagaaactgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="15995" stop="17454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16295" g_stop="16712" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16713" i_stop="16879" i_length="167">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16880" g_stop="17154" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="693" r_length="275" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E371265" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16295" e_stop="16712"/>
          <exon e_start="16880" e_stop="17154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAATGTTACGAGCTCCTGTAAGCTGGATTTTAGAAAATCCCCTGATGCAAAAGCAAAGCACACTGTTTCACAGGCTTCTTCGTTGGAGGTAGCTTGTGAAGAACAGAAGAGTCAAAATTTTAGAGTTCAAGGTTCAGTGGATTCAGTGAGTTGTAGCAGTTCAAACTCAGAAGCAAAGTCAACTCTATTCAACAGACCACCGGATGAGAAGTTCCACAGATATGGTAATTCACAGTTTGGATCTCGGGTTATTCCACTCTTTGAGGACTACAATGACAACATGGATGTACCTGCTGAGGACATCAACGAAGATGCATTCTTGAGTCATAGAGAGTACGAGAATTTCTGTTCTGTCAGCAAACAGCTTGTTCAGATTGAAAATCAACAGTCCAGTTTGTTAGACCTCCTGCAGGTACATTTCTCTTCTCCTTCCCTCAGCTCTGCTTCGAACATTATATTTAACTTTTGGTCTGCATTTAGTTGATGTCACAACCTGTAGTCTCCCCTATTTAAGAGGAATGATTTGTATATTTGTGCCAAGAGACATGCTGAGCTCAGCCTATTTCTTCTTCATTGCAGGGATTTATTGGCAGCTCACGACATGGAATGAATTCCTTAGAGAAACGTGTAAATGGTTTGGAGAGATTACTTGATGAAATGCAATATGATTTGGCAATAACAACAGGGAGGATTTCAGATACTGATTTTACAGGAAGTACATGCAGCATGATCCCTCGTGCAGAATTTTTGGGTCCTAAGTTTTGGAGAAGTCCAGAAGGGCAAAACTCACAATCAAGAATATCCTTCTCAACTGGAAGCCAGGATGTAGCGTATAGTCCATCAGAAACTGATGC</genome_strand>
        <mrna_strand>AAAATCAAATGTTACGAGCTCCTGTAAGCTGGATTTTAGAAAATCCCCTGATGCAAAAGCAAAGCACACTGTTTCACAGGCTTCTTCGTTGGAGGTAGCTTGTGAAGAACAGAAGAGTCAAAATTTTAGAGTTCAAGGTTCAGTGGATTCAGTGAGTTGTAGCAGTTCAAACTCAGAAGCAAAGTCAACTCTATTCAACAGACCACCGGATGAGAAGTTCCACAGATATGGTAATTCACAGTTTGGATCTCGGGTTATTCCACTCTTTGAGGACTACAATGACAACATGGATGTACCTGCTGAGGACATCAACGAAGATGCATTCTTGAGTCATAGAGAGTACGAGAATTTCTGTTCTGTCAGCAAACAGCTTGTTCAGATTGAAAATCAACAGTCCAGTTTGTTAGACCTCCTGCAG.......................................................................................................................................................................GGATTTATTGGCAGCTCACGACATGGAATGAATTCCTTAGAGAAACGTGTAAATGGTTTGGAGAGATTACTTGATGAAATGCAATATGATTTGGCAATAACAACAGGGAGGATTTCAGATACTGATTTTACAGGAAGTACATGCAGCATGATCCCTCGTGCAGAATTTTTGGGTCCTAAGTTTTGGAGAAGTCCAGAAAGGCAAAACTCACAATCAAGAATATCCTTCTCAACTGGAAGCCAGGATGTAGCGTATAGTCCATCAGAAACTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268995" ref_strand="+" ref_description="SGN-E268995 [cLEI-16-G6]">
      <seq>agctcctgtcagctggattttagaaaatcccctgatgcgaaagcaaagcgcactgtttcacaagcttcttcgttggaggtagcttgtgaagaacagaagagtcaaaattttagagttcaaggttcagtggattcagtgagttgtagcagttcaaactcagaagcaaagtcaactctattcaacagaccaccggatgagaagttccacagatatggtaattcacagtttggatctcgggttattccactctttgaggactacaatgacaacatggatgtacctgctgaggacatcaacgaagatgcattcttgagtcatagagagtacgagaatttctgttctgtcagcaaacagcttgttcagattgaaaatcaacagtccagtttgttagacctcctgcagggatttattggcagctcacgacatggaatgaattccttagagaaacgtgtaaatggtttggagagattacttgatgaaatgcaatatgatttggcaataacaacagggaggatttcagatactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="16011" stop="17304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16311" g_stop="16712" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16713" i_stop="16879" i_length="167">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16880" g_stop="17004" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="527" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E268995" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16311" e_stop="16712"/>
          <exon e_start="16880" e_stop="17004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCCTGTAAGCTGGATTTTAGAAAATCCCCTGATGCAAAAGCAAAGCACACTGTTTCACAGGCTTCTTCGTTGGAGGTAGCTTGTGAAGAACAGAAGAGTCAAAATTTTAGAGTTCAAGGTTCAGTGGATTCAGTGAGTTGTAGCAGTTCAAACTCAGAAGCAAAGTCAACTCTATTCAACAGACCACCGGATGAGAAGTTCCACAGATATGGTAATTCACAGTTTGGATCTCGGGTTATTCCACTCTTTGAGGACTACAATGACAACATGGATGTACCTGCTGAGGACATCAACGAAGATGCATTCTTGAGTCATAGAGAGTACGAGAATTTCTGTTCTGTCAGCAAACAGCTTGTTCAGATTGAAAATCAACAGTCCAGTTTGTTAGACCTCCTGCAGGTACATTTCTCTTCTCCTTCCCTCAGCTCTGCTTCGAACATTATATTTAACTTTTGGTCTGCATTTAGTTGATGTCACAACCTGTAGTCTCCCCTATTTAAGAGGAATGATTTGTATATTTGTGCCAAGAGACATGCTGAGCTCAGCCTATTTCTTCTTCATTGCAGGGATTTATTGGCAGCTCACGACATGGAATGAATTCCTTAGAGAAACGTGTAAATGGTTTGGAGAGATTACTTGATGAAATGCAATATGATTTGGCAATAACAACAGGGAGGATTTCAGATACTGA</genome_strand>
        <mrna_strand>AGCTCCTGTCAGCTGGATTTTAGAAAATCCCCTGATGCGAAAGCAAAGCGCACTGTTTCACAAGCTTCTTCGTTGGAGGTAGCTTGTGAAGAACAGAAGAGTCAAAATTTTAGAGTTCAAGGTTCAGTGGATTCAGTGAGTTGTAGCAGTTCAAACTCAGAAGCAAAGTCAACTCTATTCAACAGACCACCGGATGAGAAGTTCCACAGATATGGTAATTCACAGTTTGGATCTCGGGTTATTCCACTCTTTGAGGACTACAATGACAACATGGATGTACCTGCTGAGGACATCAACGAAGATGCATTCTTGAGTCATAGAGAGTACGAGAATTTCTGTTCTGTCAGCAAACAGCTTGTTCAGATTGAAAATCAACAGTCCAGTTTGTTAGACCTCCTGCAG.......................................................................................................................................................................GGATTTATTGGCAGCTCACGACATGGAATGAATTCCTTAGAGAAACGTGTAAATGGTTTGGAGAGATTACTTGATGAAATGCAATATGATTTGGCAATAACAACAGGGAGGATTTCAGATACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341539" ref_strand="+" ref_description="SGN-E341539 [cTOE-23-I2]">
      <seq>tggattcagtgagttgtagcagttcaaactcagaagcaaagtcaactctattcaacagaccaccggatgagaagttccacagatatggtaattcacagtttggatctcgggttattccactctttgaggactacaatgacaacatggatgtacctgctgaggacatcaacgaagatgcattcttgagtcatagagagtacgagaatttctgttctgtcagcaaacagcttgttcagattgaaaatcaacagtccagtttgttagacctcctgcagggatttattggcagctcacgacatggaatgaattccttagagaaacgtgtaaatggtttggagagattacttgatgaaatgcaatatgatttggcaataacaacagggaggatttcagatactgattttacaggaagtacatgcagcatgatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="16138" stop="17334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16438" g_stop="16712" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16713" i_stop="16879" i_length="167">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16880" g_stop="17034" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="430" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E341539" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16438" e_stop="16712"/>
          <exon e_start="16880" e_stop="17034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTCAGTGAGTTGTAGCAGTTCAAACTCAGAAGCAAAGTCAACTCTATTCAACAGACCACCGGATGAGAAGTTCCACAGATATGGTAATTCACAGTTTGGATCTCGGGTTATTCCACTCTTTGAGGACTACAATGACAACATGGATGTACCTGCTGAGGACATCAACGAAGATGCATTCTTGAGTCATAGAGAGTACGAGAATTTCTGTTCTGTCAGCAAACAGCTTGTTCAGATTGAAAATCAACAGTCCAGTTTGTTAGACCTCCTGCAGGTACATTTCTCTTCTCCTTCCCTCAGCTCTGCTTCGAACATTATATTTAACTTTTGGTCTGCATTTAGTTGATGTCACAACCTGTAGTCTCCCCTATTTAAGAGGAATGATTTGTATATTTGTGCCAAGAGACATGCTGAGCTCAGCCTATTTCTTCTTCATTGCAGGGATTTATTGGCAGCTCACGACATGGAATGAATTCCTTAGAGAAACGTGTAAATGGTTTGGAGAGATTACTTGATGAAATGCAATATGATTTGGCAATAACAACAGGGAGGATTTCAGATACTGATTTTACAGGAAGTACATGCAGCATGATCCC</genome_strand>
        <mrna_strand>TGGATTCAGTGAGTTGTAGCAGTTCAAACTCAGAAGCAAAGTCAACTCTATTCAACAGACCACCGGATGAGAAGTTCCACAGATATGGTAATTCACAGTTTGGATCTCGGGTTATTCCACTCTTTGAGGACTACAATGACAACATGGATGTACCTGCTGAGGACATCAACGAAGATGCATTCTTGAGTCATAGAGAGTACGAGAATTTCTGTTCTGTCAGCAAACAGCTTGTTCAGATTGAAAATCAACAGTCCAGTTTGTTAGACCTCCTGCAG.......................................................................................................................................................................GGATTTATTGGCAGCTCACGACATGGAATGAATTCCTTAGAGAAACGTGTAAATGGTTTGGAGAGATTACTTGATGAAATGCAATATGATTTGGCAATAACAACAGGGAGGATTTCAGATACTGATTTTACAGGAAGTACATGCAGCATGATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371264" ref_strand="+" ref_description="SGN-E371264 [TUS-27-C15](-)">
      <seq>catgcagcatgatccctcgtgcagaatttttgggtcctaagttttggagaagtccagaagggcaaaactcacaatcaagaatatccttctcaactggaagccaggatgtagcgtatagtccatcagaaactgatgctaccaagcagaacaagaatatatcttcagcaaagcagtttagtatcactccgggtgaagcattacgttctttctccagtcgaagaaaagagagaatagctcgagatggtgaaactgcagggttttgtcatgtcagtaggcttaatggaacgtcattcacaaattgcatacagcagcaaacttgagccttaggttgtgcggacaagaaaatactttagtctcagtgctgaaatatttgaatagtctttgtacttgaaaagaaacaaagctgtttgctgtgaagagaaatcagagaccaagataagttttcaatatctatacctggtcatgaggacaagaaatgagggtgtctgtacagaagttgtcaatgttaagtcctgtttatgcaaatgttattctgttttttgattttagtgatccaatgattgttctgtgaagatgaaatgatattcttccaaaggggagaaagtgcaaatattagtcaaattgaggagtttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="16719" stop="18290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17019" g_stop="17345" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17346" i_stop="17683" i_length="338">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17684" g_stop="17989" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="633" r_length="306" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="634" polyA_stop="654"/>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E371264" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17019" e_stop="17345"/>
          <exon e_start="17684" e_stop="17989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCAGCATGATCCCTCGTGCAGAATTTTTGGGTCCTAAGTTTTGGAGAAGTCCAGAAGGGCAAAACTCACAATCAAGAATATCCTTCTCAACTGGAAGCCAGGATGTAGCGTATAGTCCATCAGAAACTGATGCTACCAAGCAGAACAAGAATATATCTTCAGCAAAGCAGTTTAGTATCACTCCGGGTGAAGCATTACGTTCTTTCTCCAGTCGAAGAAAAGAGAGAATAGCTCGAGATGGTGAAACTGCAGGGTTTTGTCATGTCAGTAGGCTTAATGGAACGTCATTCACAAATTGCATACAGCAGCAAACTTGAGCCTTAGGTGATTGTCCTCTTTAGCTTGAAATGATGATTGTTTGATTATTGAAGACATACTAGTCTGTTGGTCTCTAATCATCGCAATACTTAAAAGTCTTCTATAATATTATAAGTTTGAATAAATGGTTTGCGCTCTCATCAACTTTTGTAGATTCTTCTTTCACATCGTGTTCTGTATCTTTCAATTCTCATTAACAACATATTTTTGGACTTGATGAAACCTAATCCTCTTGTAGCTTATACAGTCTCTCAATCATATTATGTTCTTTTACAATTATACTCGCCGCTTGAAAGGTTTTTGTTTGTGTTAGTAACTAATGATGATTTCTTCTCTCTTAGCAGGTTGTGCGGACAAGAAAATACTTTAGTCTCAGTGCTGAAATATTTGAATAGTCTTTGTACTTGAAAAGAAACAAAGCTGTTTGCTGTGAAGAGAAATCAGAGACCAAGATAAGTTTTCAATATCTATACCTGGTCATGAGGACAAGAAATGAGGGTGTCTGTACAGAAGTTGTCAATGTTAAGTCCTGTTTATGCAAATGTTATTCTGTTTTCTGATTCTAGTGATCCAATGATTGTTCTGTGAAGATGAAATGATATTCTTCCAAAGGGGAGAAAGTGCAAATATTAGTCAAATTGAGGAGTTTA</genome_strand>
        <mrna_strand>CATGCAGCATGATCCCTCGTGCAGAATTTTTGGGTCCTAAGTTTTGGAGAAGTCCAGAAGGGCAAAACTCACAATCAAGAATATCCTTCTCAACTGGAAGCCAGGATGTAGCGTATAGTCCATCAGAAACTGATGCTACCAAGCAGAACAAGAATATATCTTCAGCAAAGCAGTTTAGTATCACTCCGGGTGAAGCATTACGTTCTTTCTCCAGTCGAAGAAAAGAGAGAATAGCTCGAGATGGTGAAACTGCAGGGTTTTGTCATGTCAGTAGGCTTAATGGAACGTCATTCACAAATTGCATACAGCAGCAAACTTGAGCCTTAG..................................................................................................................................................................................................................................................................................................................................................GTTGTGCGGACAAGAAAATACTTTAGTCTCAGTGCTGAAATATTTGAATAGTCTTTGTACTTGAAAAGAAACAAAGCTGTTTGCTGTGAAGAGAAATCAGAGACCAAGATAAGTTTTCAATATCTATACCTGGTCATGAGGACAAGAAATGAGGGTGTCTGTACAGAAGTTGTCAATGTTAAGTCCTGTTTATGCAAATGTTATTCTGTTTTTTGATTTTAGTGATCCAATGATTGTTCTGTGAAGATGAAATGATATTCTTCCAAAGGGGAGAAAGTGCAAATATTAGTCAAATTGAGGAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708184" ref_strand="+" ref_description="SGN-E708184 [FA35AC10]">
      <seq>caatagggatgttgaaaacgggaagtatgatctttgtgtgtgtactatggtgtggaatcaaggttcagcgcttcgtgaatggattacatatcattcttggcttggagttgagaggtggtttatctacgacaataatagcgatgacaatatcaaggatgtgattgaagagcttgagattgagaattacaatgttacacgacatgtttggccgtggatcaagactcaagaagcaggcttttcgcattgtgctcttagagcgaagaaagaatgtaattgggtatcgttcatggatgtggatgagtatttctactttccgtattctactccagggcatcaatgtttgagaagctcaggttacgcgggacaggattcccttcgatccctcgtggcaaatgtatcatcatcttcaccaggaattgcggagattagaacaacttgccatagttttggaccgtctggtctgaattcagctccttctcagggtatcactgttggatatacttgtcgtcttaagagtcccgagagacacaaatcaatcatacgtcccgatgctttggacaccactctcctcaatgtggtgcatcatttccacttgaggaaaggatttagctacatgaatttgccacaaagtactgcagtgataaaccactacaaataccaagtgtgggaggtattcagggcgaaatttttcagacgagtagctacatatgtcgtcgattggcagaacaatcaaaatgaaggatcaagggatagagcacctggtttagggacagaggccattgagccaccaaattggccattacaattctgtgaagtttgggataccggccttcgagactttgttttgtcaaactttgctgatttatcaactggtttgttgccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="25221" stop="26703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25517" g_stop="26403" g_length="887"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="887" r_length="887" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E708184" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25517" e_stop="26403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAGGGATGTTGAAAACGGGAAGTATGATCTTTGTGTGTGTACTATGGTGTGGAATCAAGGTTCAGCGCTTCGTGAATGGATTACATATCATTCTTGGCTTGGAGTTGAGAGGTGGTTTATCTACGACAATAATAGCGATGACAATATCAAGGATGTGATTGAAGAGCTTGAGATTGAGAATTACAATGTTACACGACATGTTTGGCCGTGGATCAAGACTCAAGAAGCAGGCTTTTCGCATTGTGCTCTTAGAGCGAAGAAAGAATGTAATTGGGTATCGTTCATGGATGTGGATGAGTATTTCTACTTTCCGTATTCTACTCCAGGGCATCAATGTTTGAGAAGCTCAGGTTACGCGGGACAGGATTCCCTTCGATCCCTCGTGGCAAATGTATCATCATCTTCACCAGGAATTGCGGAGATTAGAACAACTTGCCATAGTTTTGGACCGTCTGGTCTGAATTCAGCTCCTTCTCAGGGTATCACTGTTGGATATACTTGTCGTCTTAAGAGTCCCGAGAGACACAAATCAATCATACGTCCCGATGCTTTGGACACCACTCTCCTCAATGTGGTGCATCATTTCCACTTGAGGAAAGGATTTAGCTACATGAATTTGCCACAAAGTACTGCAGTGATAAACCACTACAAATACCAAGTGTGGGAGGTATTCAGGGCGAAATTTTTCAGACGAGTAGCTACATATGTCGTCGATTGGCAGAACAATCAAAATGAAGGATCAAGGGATAGAGCACCTGGTTTAGGGACAGAGGCCATTGAGCCACCAAATTGGCCATTACAATTCTGTGAAGTTTGGGATACCGGCCTTCGAGACTTTGTTTTGTCAAACTTTGCTGATTTATCAACTGGTTTGTTGCCTTGGG</genome_strand>
        <mrna_strand>CAATAGGGATGTTGAAAACGGGAAGTATGATCTTTGTGTGTGTACTATGGTGTGGAATCAAGGTTCAGCGCTTCGTGAATGGATTACATATCATTCTTGGCTTGGAGTTGAGAGGTGGTTTATCTACGACAATAATAGCGATGACAATATCAAGGATGTGATTGAAGAGCTTGAGATTGAGAATTACAATGTTACACGACATGTTTGGCCGTGGATCAAGACTCAAGAAGCAGGCTTTTCGCATTGTGCTCTTAGAGCGAAGAAAGAATGTAATTGGGTATCGTTCATGGATGTGGATGAGTATTTCTACTTTCCGTATTCTACTCCAGGGCATCAATGTTTGAGAAGCTCAGGTTACGCGGGACAGGATTCCCTTCGATCCCTCGTGGCAAATGTATCATCATCTTCACCAGGAATTGCGGAGATTAGAACAACTTGCCATAGTTTTGGACCGTCTGGTCTGAATTCAGCTCCTTCTCAGGGTATCACTGTTGGATATACTTGTCGTCTTAAGAGTCCCGAGAGACACAAATCAATCATACGTCCCGATGCTTTGGACACCACTCTCCTCAATGTGGTGCATCATTTCCACTTGAGGAAAGGATTTAGCTACATGAATTTGCCACAAAGTACTGCAGTGATAAACCACTACAAATACCAAGTGTGGGAGGTATTCAGGGCGAAATTTTTCAGACGAGTAGCTACATATGTCGTCGATTGGCAGAACAATCAAAATGAAGGATCAAGGGATAGAGCACCTGGTTTAGGGACAGAGGCCATTGAGCCACCAAATTGGCCATTACAATTCTGTGAAGTTTGGGATACCGGCCTTCGAGACTTTGTTTTGTCAAACTTTGCTGATTTATCAACTGGTTTGTTGCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251718" ref_strand="+" ref_description="SGN-E251718 [cLEG-15-G6]">
      <seq>ttcaccaggaattgcggagattttaacaacttgccatagttttggaccgtctggtctgtattcagctccttctcagggtatcactgttggatatacttgtcgtcttaagagtcccgagagacacaaatcaatcatacgtcccgatgctttggacaccactctcctcaatgtggtgcatcatttccacttgaggaaaggatttagctacatgaatttgccacaaagtactgcagtgataaaccactacaaataccaagtgtgggaggtattcagggcgaaatttttcagacgagtagctacatatgtcgtcgattggcagaacaatcaaaatgaaggatcaagggatagagcacctggtttagggacagaggccattgagccaccaaattggccattacaattctgtgaagtttgggataccggccttcgagactttgttttgtcaaactttgctgatttatcaactggtttgttgccttgggagaagtcttctttctaatcactgagtcccgataactatcgtagagaaaggaagtctagaagccagggctttgttcacctttggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="25622" stop="26789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25922" g_stop="26489" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E251718" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25922" e_stop="26489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCAGGAATTGCGGAGATTAGAACAACTTGCCATAGTTTTGGACCGTCTGGTCTGAATTCAGCTCCTTCTCAGGGTATCACTGTTGGATATACTTGTCGTCTTAAGAGTCCCGAGAGACACAAATCAATCATACGTCCCGATGCTTTGGACACCACTCTCCTCAATGTGGTGCATCATTTCCACTTGAGGAAAGGATTTAGCTACATGAATTTGCCACAAAGTACTGCAGTGATAAACCACTACAAATACCAAGTGTGGGAGGTATTCAGGGCGAAATTTTTCAGACGAGTAGCTACATATGTCGTCGATTGGCAGAACAATCAAAATGAAGGATCAAGGGATAGAGCACCTGGTTTAGGGACAGAGGCCATTGAGCCACCAAATTGGCCATTACAATTCTGTGAAGTTTGGGATACCGGCCTTCGAGACTTTGTTTTGTCAAACTTTGCTGATTTATCAACTGGTTTGTTGCCTTGGGAGAAGTCTTCTTTCTAATCACTGAGTCCCGATAACTATCGTAGAGAAAGGAAGTCTAGAAGCCAGGGCTTTGTTCACCTTTGGACA</genome_strand>
        <mrna_strand>TTCACCAGGAATTGCGGAGATTTTAACAACTTGCCATAGTTTTGGACCGTCTGGTCTGTATTCAGCTCCTTCTCAGGGTATCACTGTTGGATATACTTGTCGTCTTAAGAGTCCCGAGAGACACAAATCAATCATACGTCCCGATGCTTTGGACACCACTCTCCTCAATGTGGTGCATCATTTCCACTTGAGGAAAGGATTTAGCTACATGAATTTGCCACAAAGTACTGCAGTGATAAACCACTACAAATACCAAGTGTGGGAGGTATTCAGGGCGAAATTTTTCAGACGAGTAGCTACATATGTCGTCGATTGGCAGAACAATCAAAATGAAGGATCAAGGGATAGAGCACCTGGTTTAGGGACAGAGGCCATTGAGCCACCAAATTGGCCATTACAATTCTGTGAAGTTTGGGATACCGGCCTTCGAGACTTTGTTTTGTCAAACTTTGCTGATTTATCAACTGGTTTGTTGCCTTGGGAGAAGTCTTCTTTCTAATCACTGAGTCCCGATAACTATCGTAGAGAAAGGAAGTCTAGAAGCCAGGGCTTTGTTCACCTTTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259912" ref_strand="+" ref_description="SGN-E259912 [cLEG-51-M15]">
      <seq>catttccacttgaggaaaggatttagctacatgaatttgccacaaagtactgcagtgataaaccactacaaataccaagtgtgggaggtattcagggcgaaatttttcagacgagtagctacatatgtcgtcgattggcagaacaatcaaaatgaaggatcaagggatagagcacctggtttagggacagaggccattgagccaccaaattggccattacaattctgtgaagtttgggataccggccttcgagactttgttttgtcaaactttgctgatttatcaactggtttgttgccttgggagaagtcttctttctaatcactgaatcccgataactatcgtagagaaaggaagtctagaagccagggctttgttcacctttggacccgagcactattccattctcgggagaaatccgtcttggagattgaacaacaataagatgagtcaacgttcaatctaagctagggagcttgaacaaaggctcaaagccaatcccccggaataataaagcttcacagggtctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="25800" stop="26932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26100" g_stop="26632" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E259912" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26100" e_stop="26632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCCACTTGAGGAAAGGATTTAGCTACATGAATTTGCCACAAAGTACTGCAGTGATAAACCACTACAAATACCAAGTGTGGGAGGTATTCAGGGCGAAATTTTTCAGACGAGTAGCTACATATGTCGTCGATTGGCAGAACAATCAAAATGAAGGATCAAGGGATAGAGCACCTGGTTTAGGGACAGAGGCCATTGAGCCACCAAATTGGCCATTACAATTCTGTGAAGTTTGGGATACCGGCCTTCGAGACTTTGTTTTGTCAAACTTTGCTGATTTATCAACTGGTTTGTTGCCTTGGGAGAAGTCTTCTTTCTAATCACTGAGTCCCGATAACTATCGTAGAGAAAGGAAGTCTAGAAGCCAGGGCTTTGTTCACCTTTGGACACGAGCACTATTCCATTCTCGGGAGAAATCCGTCTTGGAGATTGAACAACAATAAGATGAGTCAACGTTCAATCTAAGCTAGGGAGCTTGAACAAAGGCTCAAAGCCAATCCCACGGAATAGTAAAGCTTCACAGGGTCTTTCT</genome_strand>
        <mrna_strand>CATTTCCACTTGAGGAAAGGATTTAGCTACATGAATTTGCCACAAAGTACTGCAGTGATAAACCACTACAAATACCAAGTGTGGGAGGTATTCAGGGCGAAATTTTTCAGACGAGTAGCTACATATGTCGTCGATTGGCAGAACAATCAAAATGAAGGATCAAGGGATAGAGCACCTGGTTTAGGGACAGAGGCCATTGAGCCACCAAATTGGCCATTACAATTCTGTGAAGTTTGGGATACCGGCCTTCGAGACTTTGTTTTGTCAAACTTTGCTGATTTATCAACTGGTTTGTTGCCTTGGGAGAAGTCTTCTTTCTAATCACTGAATCCCGATAACTATCGTAGAGAAAGGAAGTCTAGAAGCCAGGGCTTTGTTCACCTTTGGACCCGAGCACTATTCCATTCTCGGGAGAAATCCGTCTTGGAGATTGAACAACAATAAGATGAGTCAACGTTCAATCTAAGCTAGGGAGCTTGAACAAAGGCTCAAAGCCAATCCCCCGGAATAATAAAGCTTCACAGGGTCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259909" ref_strand="+" ref_description="SGN-E259909 [cLEG-51-K15]">
      <seq>catttccacttgaggaaaggatttagctacatgaatttgccacaaagtactgcagtgataaaccactacaaataccaagtgtgggaggtattcagggcgaaatttttcagacgagtagctacatatgtcgtcgattggcagaacaatcaaaatgaaggatcaagggatagagcacctggtttagggacagaggccattgagccaccaaattggccattacaattctgtgaagtttgggataccggccttcgagactttgttttgtcaaactttgctgatttatcaactggtttgttgccttgggagaagtcttctttctaatcactgaatcccgataactatcgtagagaaaggaagtctagaagccagggctttgttcacctttggacacgagcactattccattctcgggagaaatccgtcttggagattgaaccacaataagatgagtcaacgttcaatctaagctagggagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="25800" stop="26877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26100" g_stop="26577" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E259909" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26100" e_stop="26577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCCACTTGAGGAAAGGATTTAGCTACATGAATTTGCCACAAAGTACTGCAGTGATAAACCACTACAAATACCAAGTGTGGGAGGTATTCAGGGCGAAATTTTTCAGACGAGTAGCTACATATGTCGTCGATTGGCAGAACAATCAAAATGAAGGATCAAGGGATAGAGCACCTGGTTTAGGGACAGAGGCCATTGAGCCACCAAATTGGCCATTACAATTCTGTGAAGTTTGGGATACCGGCCTTCGAGACTTTGTTTTGTCAAACTTTGCTGATTTATCAACTGGTTTGTTGCCTTGGGAGAAGTCTTCTTTCTAATCACTGAGTCCCGATAACTATCGTAGAGAAAGGAAGTCTAGAAGCCAGGGCTTTGTTCACCTTTGGACACGAGCACTATTCCATTCTCGGGAGAAATCCGTCTTGGAGATTGAACAACAATAAGATGAGTCAACGTTCAATCTAAGCTAGGGAGCTT</genome_strand>
        <mrna_strand>CATTTCCACTTGAGGAAAGGATTTAGCTACATGAATTTGCCACAAAGTACTGCAGTGATAAACCACTACAAATACCAAGTGTGGGAGGTATTCAGGGCGAAATTTTTCAGACGAGTAGCTACATATGTCGTCGATTGGCAGAACAATCAAAATGAAGGATCAAGGGATAGAGCACCTGGTTTAGGGACAGAGGCCATTGAGCCACCAAATTGGCCATTACAATTCTGTGAAGTTTGGGATACCGGCCTTCGAGACTTTGTTTTGTCAAACTTTGCTGATTTATCAACTGGTTTGTTGCCTTGGGAGAAGTCTTCTTTCTAATCACTGAATCCCGATAACTATCGTAGAGAAAGGAAGTCTAGAAGCCAGGGCTTTGTTCACCTTTGGACACGAGCACTATTCCATTCTCGGGAGAAATCCGTCTTGGAGATTGAACCACAATAAGATGAGTCAACGTTCAATCTAAGCTAGGGAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310421" ref_strand="+" ref_description="SGN-E310421 [cTOA-10-C14]">
      <seq>tttttgctctgttcttcttcctaatctctcctcattccacttgtctacactcaaccaatccacaatgacagcaaaatcaactaaccccatcttcttcttcactctgttcttcctcattttcacattaaccccatctttttccattgagaatgatgttaaatgtcttgaaggtatcaaatctgcatttcctgaccctttaaacaagctctcatcttggtcattctcaaatacttctgtagcttcaatttgtaaacttgttggtgtttcttgctggaatgagaaagaaaatcgccttctttctcttcaacttccttcaatgtctttatctgggggactcccatcttcccttcagttctgatcttctattcaatctcttgatctctctggtaactctttttccggtccaatcccagttcaaatctgctcatggttaccttatctcgtcaatctcgatctctgcagcaactatttgtacggttccataccccctgagttcatcaactgcaaattactaaacacccttctgctaaatgacaacaaactcactgggtcaatcccatttgagatcggcaggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="36086" stop="37261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36386" g_stop="36961" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E310421" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36386" e_stop="36961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTCTGTTCTTCTTCCTAATCTCTTCTCATTCCACTTCTCTACACTCAACCAATCCACAATGACAGCAAAATCAACTAACCCCATCTTCTTCTTCACTCTGTTCTTCCTCATTTTCACATTAACCCCATCTTTTTCCATTGAGAATGATGTTAAATGTCTTGAAGGTATCAAATCTGCATTTTCTGACCCTTTAAACAAGCTCTCATCTTGGTCATTCTCAAATACTTCTGTAGCTTCAATTTGTAAACTTGTTGGTGTTTCTTGCTGGAATGAGAAAGAAAATCGCCTTCTTTCTCTTCAACTTCCTTCAATGTCTTTATCTGGTTCACTCCCATCTTCCCTTCAGTTCTGTTCTTCTCTTCAATCTCTTGATCTCTCTGGTAACTCTTTTTCCGGTCCAATCCCAGTTCAAATCTGCTCATGGTTACCTTATCTCGTCAATCTCGATCTCTCCAGCAACTATTTCTCCGGTTCCATACCCCCTGAGTTCATCAACTGCAAATTCCTAAACACCCTTCTGCTAAATGACAACAAACTCACTGGGTCAATCCCATTTGAGATCGGCAGGCT</genome_strand>
        <mrna_strand>TTTTTGCTCTGTTCTTCTTCCTAATCTCTCCTCATTCCACTTGTCTACACTCAACCAATCCACAATGACAGCAAAATCAACTAACCCCATCTTCTTCTTCACTCTGTTCTTCCTCATTTTCACATTAACCCCATCTTTTTCCATTGAGAATGATGTTAAATGTCTTGAAGGTATCAAATCTGCATTTCCTGACCCTTTAAACAAGCTCTCATCTTGGTCATTCTCAAATACTTCTGTAGCTTCAATTTGTAAACTTGTTGGTGTTTCTTGCTGGAATGAGAAAGAAAATCGCCTTCTTTCTCTTCAACTTCCTTCAATGTCTTTATCTGGGGGACTCCCATCTTCCCTTCAGTTCTGATCTTCTATTCAATCTCTTGATCTCTCTGGTAACTCTTTTTCCGGTCCAATCCCAGTTCAAATCTGCTCATGGTTACCTTATCTCGTCAATCTCGATCTCTGCAGCAACTATTTGTACGGTTCCATACCCCCTGAGTTCATCAACTGCAAATTACTAAACACCCTTCTGCTAAATGACAACAAACTCACTGGGTCAATCCCATTTGAGATCGGCAGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453679" ref_strand="+" ref_description="SGN-E453679 [cSTS-20-F2]">
      <seq>cacactcaacccacccaccatgacagcaaaatcaactaaccccatcttcttcttcactcttttcttcctcattttcacattaaccccatctttttccattgaaaatgatgttaaatgtcttgaaggtatcaaatctgcactttctgaccctttaaacaagctctcatcttggtcattctcaaacacttctgtagcttcaatttgtaaacttgttggtgtttcttgctggaatgagaaagaaaaccgccttctttctcttcaacttccttcaatgtctttatccggttcactcccacctgcccttcagttctgtacttctcttcaatctcttgatctctctggtaactctttttccggtccaatcccggttcaaatctgttcttggttaccttatctcgtcaatctcgatctctccagcaactctttctccggttccataccccctgagtttattaactgcaaattcttgaacacccttattctaaatgacaacaaacttactgggtcgatcccatttgagatcggccggctcgaccggttgaaacggttcagtgtgtccaacaatggcctttccggttcaattcctgatgatttagaccggttttcgaaagatgattttgatgggaatgatnggctttgtgggaatccaattggatctaaatgtagtaatttgagtaacaaaaatcttgntattattatagctgctggtgttttttggtgctgctgcatcactgattcttggatttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="36132" stop="37478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36431" g_stop="37178" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="749" r_length="749" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E453679" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36431" e_stop="37178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTCAACCAATCCACAATGACAGCAAAATCAACTAACCCCATCTTCTTCTTCACTCTGTTCTTCCTCATTTTCACATTAACCCCATCTTTTTCCATTGAGAATGATGTTAAATGTCTTGAAGGTATCAAATCTGCATTTTCTGACCCTTTAAACAAGCTCTCATCTTGGTCATTCTCAAATACTTCTGTAGCTTCAATTTGTAAACTTGTTGGTGTTTCTTGCTGGAATGAGAAAGAAAATCGCCTTCTTTCTCTTCAACTTCCTTCAATGTCTTTATCTGGTTCACTCCCATCTTCCCTTCAGTTCTGTTCTTCTCTTCAATCTCTTGATCTCTCTGGTAACTCTTTTTCCGGTCCAATCCCAGTTCAAATCTGCTCATGGTTACCTTATCTCGTCAATCTCGATCTCTCCAGCAACTATTTCTCCGGTTCCATACCCCCTGAGTTCATCAACTGCAAATTCCTAAACACCCTTCTGCTAAATGACAACAAACTCACTGGGTCAATCCCATTTGAGATCGGCAGGCTCGACCGGTTGAAACGGTTCAGTGCATCCAACAATGGCCTTTCCGGTTCAATTCCTGATGATTTAGACCGGTTTTCGAAAGATGATTTTGATGGGAATGACGGGCTTTGTGGGAATCCAATTGGATCTAAATGTAGTAACTTGAGTAACAAAAATCTTGTTATTATTATATCTGCAGGTG-TTTTTGGTGCTGCTGCATCACTGATTCTTGGATTTGGG</genome_strand>
        <mrna_strand>CACACTCAACCCACCCACCATGACAGCAAAATCAACTAACCCCATCTTCTTCTTCACTCTTTTCTTCCTCATTTTCACATTAACCCCATCTTTTTCCATTGAAAATGATGTTAAATGTCTTGAAGGTATCAAATCTGCACTTTCTGACCCTTTAAACAAGCTCTCATCTTGGTCATTCTCAAACACTTCTGTAGCTTCAATTTGTAAACTTGTTGGTGTTTCTTGCTGGAATGAGAAAGAAAACCGCCTTCTTTCTCTTCAACTTCCTTCAATGTCTTTATCCGGTTCACTCCCACCTGCCCTTCAGTTCTGTACTTCTCTTCAATCTCTTGATCTCTCTGGTAACTCTTTTTCCGGTCCAATCCCGGTTCAAATCTGTTCTTGGTTACCTTATCTCGTCAATCTCGATCTCTCCAGCAACTCTTTCTCCGGTTCCATACCCCCTGAGTTTATTAACTGCAAATTCTTGAACACCCTTATTCTAAATGACAACAAACTTACTGGGTCGATCCCATTTGAGATCGGCCGGCTCGACCGGTTGAAACGGTTCAGTGTGTCCAACAATGGCCTTTCCGGTTCAATTCCTGATGATTTAGACCGGTTTTCGAAAGATGATTTTGATGGGAATGATNGGCTTTGTGGGAATCCAATTGGATCTAAATGTAGTAATTTGAGTAACAAAAATCTTGNTATTATTATAGCTGCTGGTGTTTTTTGGTGCTGCTGCATCACTGATTCTTGGATTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425003" ref_strand="+" ref_description="SGN-E425003 [STM-44-M12]">
      <seq>cacactcaacccacccaccatgacagcaaaatcaactaaccccatcttcttcttcactcttttcttcctcattttcacattaaccccatctttttccattgaaaatgatgttaaatgtcttgaaggtatcaaatctgcactttctgaccctttaaacaagctctcatcttggtcattctcaaacacttctgtagcttcaatttgtaaacttgttggtgtttcttgctggaatgagaaagaaaaccgccttctttctcttcaacttccttcaatgtctttatccggttcactcccacctgcccttcagttctgtacttctcttcaatctcttgatctctctggtaactctttttccggtccaatcccggttcaaatctgttcttggttaccttatctcgtcaatctcgatctctccagcaactctttctccggttccataccccctgagtttattaactgcaaattcttgaacacccttattctaaatgacaacaaacttactgggtcgatcccatttgagatcggccggctcgaccggttgaaacggttcagtgtgtccaacaatggcctttccggttcaattcctgatgatttagaccggttttcgaaagatgattttgatgggaatgatgggctttgtgggaatcaattggatctaaatgtagtaatttgagtaaaaaaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="36132" stop="37418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36431" g_stop="37118" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E425003" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36431" e_stop="37118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTCAACCAATCCACAATGACAGCAAAATCAACTAACCCCATCTTCTTCTTCACTCTGTTCTTCCTCATTTTCACATTAACCCCATCTTTTTCCATTGAGAATGATGTTAAATGTCTTGAAGGTATCAAATCTGCATTTTCTGACCCTTTAAACAAGCTCTCATCTTGGTCATTCTCAAATACTTCTGTAGCTTCAATTTGTAAACTTGTTGGTGTTTCTTGCTGGAATGAGAAAGAAAATCGCCTTCTTTCTCTTCAACTTCCTTCAATGTCTTTATCTGGTTCACTCCCATCTTCCCTTCAGTTCTGTTCTTCTCTTCAATCTCTTGATCTCTCTGGTAACTCTTTTTCCGGTCCAATCCCAGTTCAAATCTGCTCATGGTTACCTTATCTCGTCAATCTCGATCTCTCCAGCAACTATTTCTCCGGTTCCATACCCCCTGAGTTCATCAACTGCAAATTCCTAAACACCCTTCTGCTAAATGACAACAAACTCACTGGGTCAATCCCATTTGAGATCGGCAGGCTCGACCGGTTGAAACGGTTCAGTGCATCCAACAATGGCCTTTCCGGTTCAATTCCTGATGATTTAGACCGGTTTTCGAAAGATGATTTTGATGGGAATGACGGGCTTTGTGGGAATCCAATTGGATCTAAATGTAGTAACTTGAGTAACAAAAATCTT</genome_strand>
        <mrna_strand>CACACTCAACCCACCCACCATGACAGCAAAATCAACTAACCCCATCTTCTTCTTCACTCTTTTCTTCCTCATTTTCACATTAACCCCATCTTTTTCCATTGAAAATGATGTTAAATGTCTTGAAGGTATCAAATCTGCACTTTCTGACCCTTTAAACAAGCTCTCATCTTGGTCATTCTCAAACACTTCTGTAGCTTCAATTTGTAAACTTGTTGGTGTTTCTTGCTGGAATGAGAAAGAAAACCGCCTTCTTTCTCTTCAACTTCCTTCAATGTCTTTATCCGGTTCACTCCCACCTGCCCTTCAGTTCTGTACTTCTCTTCAATCTCTTGATCTCTCTGGTAACTCTTTTTCCGGTCCAATCCCGGTTCAAATCTGTTCTTGGTTACCTTATCTCGTCAATCTCGATCTCTCCAGCAACTCTTTCTCCGGTTCCATACCCCCTGAGTTTATTAACTGCAAATTCTTGAACACCCTTATTCTAAATGACAACAAACTTACTGGGTCGATCCCATTTGAGATCGGCCGGCTCGACCGGTTGAAACGGTTCAGTGTGTCCAACAATGGCCTTTCCGGTTCAATTCCTGATGATTTAGACCGGTTTTCGAAAGATGATTTTGATGGGAATGATGGGCTTTGTGGGAAT-CAATTGGATCTAAATGTAGTAATTTGAGTAA-AAAAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425004" ref_strand="+" ref_description="SGN-E425004 [STM-44-M12]">
      <seq>naatcaaaaattttttcagaaagtacaaagatcacgcatttacttctcaaactatacagagttatcaagaaatacaaatgccataattagaatattcaaaattcataaacatttgtctaatcatttcaatcctataacctaatctttatgatcatggttttctttggtcaagttgattggaaactcatcaaagtgttcagagaaacaatgttctttcaccatgctcttcaaggactgatacactgtgtacatcgaaggtctatctttcggccttgaaaccacacacgaacatgcaatttgaagaactcgcaaaatttcatcatcttgaccacttccaacaaaagctttatcaattgcgtccttactatgacctgagctcgaaagctgattaacccaatcgactaaactacctttgaatccctcctctgcattacccgcaccaagaggcttccgccctgtcaccaactcaagcagcactactccaaaactatacacatcccctttcattgaagcaaccaacgtgctcgaatactcaggagctacataaccaaactctcccaaatccccattcacaaacgaactatcattcgagtcagcagaaccaataagccttgcaagcccaaaatccgtgatcctagcatcaaaatcatcgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="-" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="38720" stop="37475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38423" g_stop="37775" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="-" ref_id="SGN-E425004" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38423" e_stop="37775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTAAAAATGTGTCAAGAAAGTACAAAGATCATGCATTTGCTTCTCAAACTATACAAATTTTTATCAAGAAACACAAATGCCATAACTAGAATATTCAAAATTCATGAGCATTTATCTAGTCATTTCAATGCTATAACCTAATCTTTATGATCATGATTTTCCTTGGTCAAGTTGATTGGAAACTCATCAAAGTGTTCAGAGAAACAATGATCTTTCACCATACTCTTCAAGGACTGATACACTGTGTACATCGAAGGTCTATCTTTCGGCCTTGAAACCACACACAAACATGCAATTTGAAGAACTCGTAAAATTTCATCATCTCGACCACTTCCAGCAAAAGATTTATCAATCGCGTCCTTACTATGTCCTGAGCTCGAAAGCTGATTAACCCAATCGACTAAACTACCTTTGAAT--C-CCTC--C--T--CCGCACCAACAGGCTTCCGCCCTGTCACCAACTCAAGTAGCACTACTCCAAAACTATACACATCCCCTTTCATTGAAGCAACCAACGTGCTCGAATACTCAGGAGGCACATAACCAAACTCTCCCAAATCCCCATTCACAAACAAGCTATCATTCGAGTCAGTAGAACCAATAAGCCTTGCAAGCCCAAAATCCGTGATCCTAGCATCATAATCATCGTCT</genome_strand>
        <mrna_strand>NAATCAAAAATTTTTTCA-GAAAGTACAAAGATCACGCATTTACTTCTCAAACTATACAGA--GTTATCAAGAAATACAAATGCCATAATTAGAATATTCAAAATTCATAAACATTTGTCTAATCATTTCAATCCTATAACCTAATCTTTATGATCATGGTTTTCTTTGGTCAAGTTGATTGGAAACTCATCAAAGTGTTCAGAGAAACAATGTTCTTTCACCATGCTCTTCAAGGACTGATACACTGTGTACATCGAAGGTCTATCTTTCGGCCTTGAAACCACACACGAACATGCAATTTGAAGAACTCGCAAAATTTCATCATCTTGACCACTTCCAACAAAAGCTTTATCAATTGCGTCCTTACTATGACCTGAGCTCGAAAGCTGATTAACCCAATCGACTAAACTACCTTTGAATCCCTCCTCTGCATTACCCGCACCAAGAGGCTTCCGCCCTGTCACCAACTCAAGCAGCACTACTCCAAAACTATACACATCCCCTTTCATTGAAGCAACCAACGTGCTCGAATACTCAGGAGCTACATAACCAAACTCTCCCAAATCCCCATTCACAAACGAACTATCATTCGAGTCAGCAGAACCAATAAGCCTTGCAAGCCCAAAATCCGTGATCCTAGCATCAAAATCATCGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550708" ref_strand="+" ref_description="SGN-E550708 [TUS-50-E13]">
      <seq>cgaattcagaaacctccaaatcgaaacttcatcggcggtgagaaaacggagatacaatcaattctatggattctccattttcgccggcaatttatctcttcatcatcatctccttctccttctcctttcttttagtttcttcatctccgaattcatccctagggctcgacgcaatctataatggcgaagcggaacaaagagatgaaagcggaatcataaggcgtagacatctgatgagctttaaggagacgcctattggtacaaatatcacttatgattgttctccttctggtccttgtgttccttgctcgtactccgaaaagaaagatgaaaagtataggtgcagtgaaactggatatcgtatccctttcaactgtatagagattaaagctagtacaaaggaagtgaaaaacaagaaaggaaagaagaagcgatctgctttggaggacacatatactgcagtaaggccacatgccatgaagcacaatgaacaagctcttacctcctcggtaagacaaagaaatttgctggacgattcatcctcgtcaaagagtggaatacatacgtatataacttataggagctgtgttctttcaataaatgaggagaagctgtcagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40039" stop="42006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40339" g_stop="40661" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40662" i_stop="41409" i_length="748">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41410" g_stop="41706" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="620" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E550708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40339" e_stop="40661"/>
          <exon e_start="41410" e_stop="41706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATTCAGAAACCTCCAAATCGAAACTTCATCGGCGGTGAGAAAACGGAGATACAATCAATTCTATGGATTCTCCATTTTCGCCGGCAATTTATCTCTTCATCATCATCTCCTTCTCCTTCTCCTTTCTTTTAGTTTCTTCATCTCCGAATTCATCCCTAGGGCTCGACGCAATCTATAATGGCGAAGCGGAACAAAGAGATGAAAGCGGAATCATAAGGCGTAGACATCTGATGAGCTTTAAGGAGACGCCTATTGGTACAAATATCACTTATGATTGTTCTCCTTCTGGTCCTTGTGTTCCTTGCTCGTACTCCGAAAAGGTTTTCTCTCTTATTTCCTTCGTATTGATAATTGATCATTGTTTTAGATTTGAATTTTATGCATCTTTATCATCAGTTAGCTGAGGCGTATTTGCTTGTAGATTTATATGATCAATTAGGTAGGAAGAACTCCAATTTTGCTTGTTTTAGGAAAAAATATGCCTGAATAGACCAAATGAAAACAGTTGATGAATCAGATTGTAGTTGATCGATAGTACTTTGGAGGTAGAGAAACGTGTAGAGTGTAGACAGTTGACACTACTTTGGAGGTAGAGAAACGTGTAGAGTATGTGCAGACCTTACTACTACCTTGGAGGTAGAGAAATGGGTAGAGTATATGCAGAACTGACCACTACCTTGGAGGTAGAGATGTGAAGTTGTTTCTGATAGACCCTCAGCTCAAGGAAATAACAGACGTAGTTGATCCATAATGAGGTGGTCAAATGCATAACATATTGTTGTTTAATTTATTTATTATATCTAATGTTGTTAATCATAACAAATTTCTCGTGTGGAGAGTTGTATGTATTGATATTCTTAGATTAAATACAGATTAAATGTCAAATTTCTGTCATGGCTATAACATAATTAAGTGAGATAGTAAATTGGAGCGCTTATTGAATTGTATAGGGAGAAGGAGAATGATAATTGTTATTGTCTCAAGTAAGCAAAGTGATGTATAGATACTGCTTGTTTAGGTCGCATTCTTTTAAGTTAAATTTGTGATGTTTTCCCAATGTGCTTTCAGAAAGATGAAAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACGATTCATCCTCGTCAAAGAGTGGAATACATACGTATATAACTTATAGGAGCTGTGTTCTTTCAATAAATGAGGAGAAGCTGTCAGTA</genome_strand>
        <mrna_strand>CGAATTCAGAAACCTCCAAATCGAAACTTCATCGGCGGTGAGAAAACGGAGATACAATCAATTCTATGGATTCTCCATTTTCGCCGGCAATTTATCTCTTCATCATCATCTCCTTCTCCTTCTCCTTTCTTTTAGTTTCTTCATCTCCGAATTCATCCCTAGGGCTCGACGCAATCTATAATGGCGAAGCGGAACAAAGAGATGAAAGCGGAATCATAAGGCGTAGACATCTGATGAGCTTTAAGGAGACGCCTATTGGTACAAATATCACTTATGATTGTTCTCCTTCTGGTCCTTGTGTTCCTTGCTCGTACTCCGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATGAAAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACGATTCATCCTCGTCAAAGAGTGGAATACATACGTATATAACTTATAGGAGCTGTGTTCTTTCAATAAATGAGGAGAAGCTGTCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688387" ref_strand="+" ref_description="SGN-E688387 [t3_tus_50_e13]">
      <seq>cgaattcagaaacctccaaatcgaaacttcatcggcggtgagaaaacggagatacaatcaattctatggattctccattttcgccggcaatttatctcttcatcatcatctccttctccttctcctttcttttagtttcttcatctccgaattcatccctagggctcgacgcaatctataatggcgaagcggaacaaagagatgaaagcggaatcataaggcgtagacatctgatgagctttaaggagacgcctattggtacaaatatcacttatgattgttctccttctggtccttgtgttccttgctcgtactccgaaaagaaagatgaaaagtataggtgcagtgaaactggatatcgtatccctttcaactgtatagagattaaagctagtacaaaggaagtgaaaaacaagaaaggaaagaagaagcgatctgctttggaggacacatatactgcagtaaggccacatgccatgaagcacaatgaacaagctcttacctcctcggtaagacaaagaaatttgctggacgattcatcctcgtcaaagagtggaatacatacgtatataacttataggagctgtgttctttcaataaatgaggagaagctgtcagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40039" stop="42006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40339" g_stop="40661" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40662" i_stop="41409" i_length="748">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41410" g_stop="41706" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="620" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E688387" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40339" e_stop="40661"/>
          <exon e_start="41410" e_stop="41706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATTCAGAAACCTCCAAATCGAAACTTCATCGGCGGTGAGAAAACGGAGATACAATCAATTCTATGGATTCTCCATTTTCGCCGGCAATTTATCTCTTCATCATCATCTCCTTCTCCTTCTCCTTTCTTTTAGTTTCTTCATCTCCGAATTCATCCCTAGGGCTCGACGCAATCTATAATGGCGAAGCGGAACAAAGAGATGAAAGCGGAATCATAAGGCGTAGACATCTGATGAGCTTTAAGGAGACGCCTATTGGTACAAATATCACTTATGATTGTTCTCCTTCTGGTCCTTGTGTTCCTTGCTCGTACTCCGAAAAGGTTTTCTCTCTTATTTCCTTCGTATTGATAATTGATCATTGTTTTAGATTTGAATTTTATGCATCTTTATCATCAGTTAGCTGAGGCGTATTTGCTTGTAGATTTATATGATCAATTAGGTAGGAAGAACTCCAATTTTGCTTGTTTTAGGAAAAAATATGCCTGAATAGACCAAATGAAAACAGTTGATGAATCAGATTGTAGTTGATCGATAGTACTTTGGAGGTAGAGAAACGTGTAGAGTGTAGACAGTTGACACTACTTTGGAGGTAGAGAAACGTGTAGAGTATGTGCAGACCTTACTACTACCTTGGAGGTAGAGAAATGGGTAGAGTATATGCAGAACTGACCACTACCTTGGAGGTAGAGATGTGAAGTTGTTTCTGATAGACCCTCAGCTCAAGGAAATAACAGACGTAGTTGATCCATAATGAGGTGGTCAAATGCATAACATATTGTTGTTTAATTTATTTATTATATCTAATGTTGTTAATCATAACAAATTTCTCGTGTGGAGAGTTGTATGTATTGATATTCTTAGATTAAATACAGATTAAATGTCAAATTTCTGTCATGGCTATAACATAATTAAGTGAGATAGTAAATTGGAGCGCTTATTGAATTGTATAGGGAGAAGGAGAATGATAATTGTTATTGTCTCAAGTAAGCAAAGTGATGTATAGATACTGCTTGTTTAGGTCGCATTCTTTTAAGTTAAATTTGTGATGTTTTCCCAATGTGCTTTCAGAAAGATGAAAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACGATTCATCCTCGTCAAAGAGTGGAATACATACGTATATAACTTATAGGAGCTGTGTTCTTTCAATAAATGAGGAGAAGCTGTCAGTA</genome_strand>
        <mrna_strand>CGAATTCAGAAACCTCCAAATCGAAACTTCATCGGCGGTGAGAAAACGGAGATACAATCAATTCTATGGATTCTCCATTTTCGCCGGCAATTTATCTCTTCATCATCATCTCCTTCTCCTTCTCCTTTCTTTTAGTTTCTTCATCTCCGAATTCATCCCTAGGGCTCGACGCAATCTATAATGGCGAAGCGGAACAAAGAGATGAAAGCGGAATCATAAGGCGTAGACATCTGATGAGCTTTAAGGAGACGCCTATTGGTACAAATATCACTTATGATTGTTCTCCTTCTGGTCCTTGTGTTCCTTGCTCGTACTCCGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATGAAAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACGATTCATCCTCGTCAAAGAGTGGAATACATACGTATATAACTTATAGGAGCTGTGTTCTTTCAATAAATGAGGAGAAGCTGTCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205670" ref_strand="+" ref_description="SGN-E205670 [cLEC-21-E9]">
      <seq>gaattcagaaacctccaaatcgaaacttcatcggcggtgagaaaacggagataccaccaattctatggattctccattttcgccggcaatttatctcttcatcatcatctccttctccttctcctttcttttagattcttcatctccgaattcatccctagggctcgacgcaatctataatggcgaagcggaacaaagagatgaaagcggactcataaggcgtagacatctgatgagctttaaggagacgcctattggtacaaatatcacttatgattgatctccttctgggccttgtgttccttgctcgtactccgaaaagaaagatgaaaagtatatgtgcagtgaaactggatatcggatccctttcaactgtatagagattaaagctagtacaaaggaagtgaaaaacaagaaaggaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40040" stop="41813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40340" g_stop="40661" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40662" i_stop="41409" i_length="748">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41410" g_stop="41513" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="426" r_length="104" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E205670" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40340" e_stop="40661"/>
          <exon e_start="41410" e_stop="41513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCAGAAACCTCCAAATCGAAACTTCATCGGCGGTGAGAAAACGGAGATACAATCAATTCTATGGATTCTCCATTTTCGCCGGCAATTTATCTCTTCATCATCATCTCCTTCTCCTTCTCCTTTCTTTTAGTTTCTTCATCTCCGAATTCATCCCTAGGGCTCGACGCAATCTATAATGGCGAAGCGGAACAAAGAGATGAAAGCGGAATCATAAGGCGTAGACATCTGATGAGCTTTAAGGAGACGCCTATTGGTACAAATATCACTTATGATTGTTCTCCTTCTGGTCCTTGTGTTCCTTGCTCGTACTCCGAAAAGGTTTTCTCTCTTATTTCCTTCGTATTGATAATTGATCATTGTTTTAGATTTGAATTTTATGCATCTTTATCATCAGTTAGCTGAGGCGTATTTGCTTGTAGATTTATATGATCAATTAGGTAGGAAGAACTCCAATTTTGCTTGTTTTAGGAAAAAATATGCCTGAATAGACCAAATGAAAACAGTTGATGAATCAGATTGTAGTTGATCGATAGTACTTTGGAGGTAGAGAAACGTGTAGAGTGTAGACAGTTGACACTACTTTGGAGGTAGAGAAACGTGTAGAGTATGTGCAGACCTTACTACTACCTTGGAGGTAGAGAAATGGGTAGAGTATATGCAGAACTGACCACTACCTTGGAGGTAGAGATGTGAAGTTGTTTCTGATAGACCCTCAGCTCAAGGAAATAACAGACGTAGTTGATCCATAATGAGGTGGTCAAATGCATAACATATTGTTGTTTAATTTATTTATTATATCTAATGTTGTTAATCATAACAAATTTCTCGTGTGGAGAGTTGTATGTATTGATATTCTTAGATTAAATACAGATTAAATGTCAAATTTCTGTCATGGCTATAACATAATTAAGTGAGATAGTAAATTGGAGCGCTTATTGAATTGTATAGGGAGAAGGAGAATGATAATTGTTATTGTCTCAAGTAAGCAAAGTGATGTATAGATACTGCTTGTTTAGGTCGCATTCTTTTAAGTTAAATTTGTGATGTTTTCCCAATGTGCTTTCAGAAAGATGAAAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAA</genome_strand>
        <mrna_strand>GAATTCAGAAACCTCCAAATCGAAACTTCATCGGCGGTGAGAAAACGGAGATACCACCAATTCTATGGATTCTCCATTTTCGCCGGCAATTTATCTCTTCATCATCATCTCCTTCTCCTTCTCCTTTCTTTTAGATTCTTCATCTCCGAATTCATCCCTAGGGCTCGACGCAATCTATAATGGCGAAGCGGAACAAAGAGATGAAAGCGGACTCATAAGGCGTAGACATCTGATGAGCTTTAAGGAGACGCCTATTGGTACAAATATCACTTATGATTGATCTCCTTCTGGGCCTTGTGTTCCTTGCTCGTACTCCGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATGAAAAGTATATGTGCAGTGAAACTGGATATCGGATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231393" ref_strand="+" ref_description="SGN-E231393 [cLED-10-N5]">
      <seq>tctcttcatcatcatctccttctccttctcctttcttttagtttcttcatctccgaattcatccctagggctcgacgcaatctataatggcgaagcggaacaaagagatgaaagcggaatcataaggcgtagacatctgatgagctttaaggagacgcctattggtacaaatatcacttatgattgttctccttctggtccttgtgttccttgctcgtactccgaaaagaaagatgaaaagtataggtgcagtgaaactggatatcgtatccctttcaactgtatagagattaaagctagtacaaaggaagtgaaaaacaagaaaggaaagaagaagcgatctgctttggaggacacatatactgcagtaaggccacatgccatgaagcacaatgaacaagctcttacctcctcggtgagacaaagaaatttgctggacgattcatcctcgtcaaagagtggaatacatacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40133" stop="41952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40433" g_stop="40661" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40662" i_stop="41409" i_length="748">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41410" g_stop="41652" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="472" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E231393" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40433" e_stop="40661"/>
          <exon e_start="41410" e_stop="41652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCATCATCATCTCCTTCTCCTTCTCCTTTCTTTTAGTTTCTTCATCTCCGAATTCATCCCTAGGGCTCGACGCAATCTATAATGGCGAAGCGGAACAAAGAGATGAAAGCGGAATCATAAGGCGTAGACATCTGATGAGCTTTAAGGAGACGCCTATTGGTACAAATATCACTTATGATTGTTCTCCTTCTGGTCCTTGTGTTCCTTGCTCGTACTCCGAAAAGGTTTTCTCTCTTATTTCCTTCGTATTGATAATTGATCATTGTTTTAGATTTGAATTTTATGCATCTTTATCATCAGTTAGCTGAGGCGTATTTGCTTGTAGATTTATATGATCAATTAGGTAGGAAGAACTCCAATTTTGCTTGTTTTAGGAAAAAATATGCCTGAATAGACCAAATGAAAACAGTTGATGAATCAGATTGTAGTTGATCGATAGTACTTTGGAGGTAGAGAAACGTGTAGAGTGTAGACAGTTGACACTACTTTGGAGGTAGAGAAACGTGTAGAGTATGTGCAGACCTTACTACTACCTTGGAGGTAGAGAAATGGGTAGAGTATATGCAGAACTGACCACTACCTTGGAGGTAGAGATGTGAAGTTGTTTCTGATAGACCCTCAGCTCAAGGAAATAACAGACGTAGTTGATCCATAATGAGGTGGTCAAATGCATAACATATTGTTGTTTAATTTATTTATTATATCTAATGTTGTTAATCATAACAAATTTCTCGTGTGGAGAGTTGTATGTATTGATATTCTTAGATTAAATACAGATTAAATGTCAAATTTCTGTCATGGCTATAACATAATTAAGTGAGATAGTAAATTGGAGCGCTTATTGAATTGTATAGGGAGAAGGAGAATGATAATTGTTATTGTCTCAAGTAAGCAAAGTGATGTATAGATACTGCTTGTTTAGGTCGCATTCTTTTAAGTTAAATTTGTGATGTTTTCCCAATGTGCTTTCAGAAAGATGAAAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACGATTCATCCTCGTCAAAGAGTGGAATACATACG</genome_strand>
        <mrna_strand>TCTCTTCATCATCATCTCCTTCTCCTTCTCCTTTCTTTTAGTTTCTTCATCTCCGAATTCATCCCTAGGGCTCGACGCAATCTATAATGGCGAAGCGGAACAAAGAGATGAAAGCGGAATCATAAGGCGTAGACATCTGATGAGCTTTAAGGAGACGCCTATTGGTACAAATATCACTTATGATTGTTCTCCTTCTGGTCCTTGTGTTCCTTGCTCGTACTCCGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATGAAAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTGAGACAAAGAAATTTGCTGGACGATTCATCCTCGTCAAAGAGTGGAATACATACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253770" ref_strand="+" ref_description="SGN-E253770 [cLEG-32-O12]">
      <seq>tttagtttcttcatctccgaattcatccctagggctcgacgcaatctataatggcgaagcggaacaaagagatgaaagcggaatcataaggcgtagacatctgatgagctttaaggagacgcctattggtacaaatatcacttatgattgttctccttctggtccttgtgttccttgctcgtactccgaaaagaaagatgaaaagtataggtgcagtgaaactggatatcgtatccctttcaactgtatagagattaaagctagtacaaaggaagtgaaaaacaagaaaggaaagaagaagcgatctgctttggaggacacatatactgcagtaaggccacatgccatgaagcacaatgaacaagctcttacctcctcggtaagacaaagaaatttgctggacgattcatcctcgtcaaagagtggaatacatacgtatataacttataggagctgtgttctttcaataaatgaggagaagctgtcagtacttgggtttgaggtgattatgctgggtttactgattgtcagtggttcaaccatatacttcagaaaacggcgagcaggcgctgtatctggtgctgggcctgtcagacttccaactagttctcgattctaactaaaaatctgtacgtttgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40169" stop="43301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40469" g_stop="40661" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40662" i_stop="41409" i_length="748">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41410" g_stop="41718" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="502" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41719" i_stop="42861" i_length="1143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42862" g_stop="43001" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="642" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E253770" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40469" e_stop="40661"/>
          <exon e_start="41410" e_stop="41718"/>
          <exon e_start="42862" e_stop="43001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTTTCTTCATCTCCGAATTCATCCCTAGGGCTCGACGCAATCTATAATGGCGAAGCGGAACAAAGAGATGAAAGCGGAATCATAAGGCGTAGACATCTGATGAGCTTTAAGGAGACGCCTATTGGTACAAATATCACTTATGATTGTTCTCCTTCTGGTCCTTGTGTTCCTTGCTCGTACTCCGAAAAGGTTTTCTCTCTTATTTCCTTCGTATTGATAATTGATCATTGTTTTAGATTTGAATTTTATGCATCTTTATCATCAGTTAGCTGAGGCGTATTTGCTTGTAGATTTATATGATCAATTAGGTAGGAAGAACTCCAATTTTGCTTGTTTTAGGAAAAAATATGCCTGAATAGACCAAATGAAAACAGTTGATGAATCAGATTGTAGTTGATCGATAGTACTTTGGAGGTAGAGAAACGTGTAGAGTGTAGACAGTTGACACTACTTTGGAGGTAGAGAAACGTGTAGAGTATGTGCAGACCTTACTACTACCTTGGAGGTAGAGAAATGGGTAGAGTATATGCAGAACTGACCACTACCTTGGAGGTAGAGATGTGAAGTTGTTTCTGATAGACCCTCAGCTCAAGGAAATAACAGACGTAGTTGATCCATAATGAGGTGGTCAAATGCATAACATATTGTTGTTTAATTTATTTATTATATCTAATGTTGTTAATCATAACAAATTTCTCGTGTGGAGAGTTGTATGTATTGATATTCTTAGATTAAATACAGATTAAATGTCAAATTTCTGTCATGGCTATAACATAATTAAGTGAGATAGTAAATTGGAGCGCTTATTGAATTGTATAGGGAGAAGGAGAATGATAATTGTTATTGTCTCAAGTAAGCAAAGTGATGTATAGATACTGCTTGTTTAGGTCGCATTCTTTTAAGTTAAATTTGTGATGTTTTCCCAATGTGCTTTCAGAAAGATGAAAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACGATTCATCCTCGTCAAAGAGTGGAATACATACGTATATAACTTATAGGAGCTGTGTTCTTTCAATAAATGAGGAGAAGCTGTCAGTACTTGGGTTTGAGGTAAGTACATACTTTTTCTGCTTTACATAACTGTCTTGTGGAGAATTATCCAATTTACATTCTGCAACCTGTTTAGCTGTTTCTTTCAATATGGTTGCTGGTTTTAGTATTCAGAAATCATTTCACTGCTATCCAAAAGCAAAACATGAAATTGGATGATTGTGAGATCCATATATTAGAACTAAACAAGTTTTAATAGTGAAAGTTGATGAGGCACTTTATAGAAAAAGAACGTAAGTTATTGAGGTATAGAGAAGTAATTGAAGACCACTCAAGTTAATTGAAGGACTTTGAAAGGAAGGAAGGAGGCTTAATGCATTTCCTCTCTAAATGTGAAAAAATATAACTAGGTAAGTAGAGGGGCATATTGCAATTCGTGAAACTTTCAAAGAAATATTTGAATAATCTGTTATCAGAAAATGGAGAGGATATTATCAGGACTTATTATCCCCAATTTCTGTAGATTCCTCTTGGATTGTCATGTGTAGTCAAAATATAACTTTAGGTTGAAAAGTTCGATACTATTAAATTTAGGTCGACTGACCTAGTCGTCTTGTTTCAAAAACTTTCTGGGTTTTGTTTCCTGAATGCGTGAAACGAACCACTCCTTTGGTGGGGCAAAGTTACCTAGTACATGTTTTGGTGAGAGATAGCAAGTATCCGATCGAATAATTAAGGTATACACAAGTTGGTTAGGACACCATTGCTATCAATTAAAAAAATGATGTGAACCATTTTACAAGCTTGCCTTAGGTATTGGCTGCTCTTATACTGCATAGGGATAAACGAGTTGTGTGGTGTTATTCTCTTTAGAAGTGTGAGATTTTTTAGGTAAAGTCAAAGCTAATTGGGAGATCTTTATCGTGTTTTCATGGATTAACATGTTCATTTCCTTCTTCACGCGTGACTGAACTTTCAAAGTTAGCTGTCTCACTGTGTTTCGATATAATCATAAGAAGGATGATTCTCCCACACAACTTGTGTCAAAAGAAGACCTATTATACTTGCAGAACAGCTCTGTAAAAGAACCTCATGGCTTGAGTTCAAAAACAAGCTCTTTCTTATTCTGTAAATATTTTGGATTTAATTGAGAATATGCCTGATTCTTATGCCAAGCGGTTTAATTGGATCTGCATTATGTAGGTGATTATGCTGGGTTTACTGATTGTCAGTGGTTCAACCATATACTTCAGAAAACGGCGAGCAGGCGCTGTATCTGGTGCTGGGCCTGTCAGACTTCCAACTAGTTCTCGATTCTAACTAAAAATCTGTACGTTTGCAGC</genome_strand>
        <mrna_strand>TTTAGTTTCTTCATCTCCGAATTCATCCCTAGGGCTCGACGCAATCTATAATGGCGAAGCGGAACAAAGAGATGAAAGCGGAATCATAAGGCGTAGACATCTGATGAGCTTTAAGGAGACGCCTATTGGTACAAATATCACTTATGATTGTTCTCCTTCTGGTCCTTGTGTTCCTTGCTCGTACTCCGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATGAAAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACGATTCATCCTCGTCAAAGAGTGGAATACATACGTATATAACTTATAGGAGCTGTGTTCTTTCAATAAATGAGGAGAAGCTGTCAGTACTTGGGTTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTATGCTGGGTTTACTGATTGTCAGTGGTTCAACCATATACTTCAGAAAACGGCGAGCAGGCGCTGTATCTGGTGCTGGGCCTGTCAGACTTCCAACTAGTTCTCGATTCTAACTAAAAATCTGTACGTTTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253664" ref_strand="+" ref_description="SGN-E253664 [cLEG-32-O22]">
      <seq>tctccgaatttatccctagggctcgacgcaatctataatggcgaagcggagcaaagagatgaaagcggaatcatatggcgtagacatctgatgagctttaaggagacgcctattggtacaaatatcacttatgattgttctccttctggtccttgtgttccttgctcgtactccgaaaagaaagatgaaaagtataggtgcagtgaaactggatatcgtatccctttcaactgtatagagattaaagctagtacaaaggaagtgaaaaacaagaaaggaaagaagaagcgatctgctttggaggacacatatactgcagtaagggcacatgccatgaagcacaatgaacaagctcttacctcctcggtaagacaaagaaatttgctggacgattcatcctcgtcaaagagtggaatacatacgtatataacttataggagctgtgttctttcaataaatgaggagaagctgtcagtacttgggtttgaggtgattatgctgggtttactgattgtcagtggttcaaccatatacttcagaaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="40182" stop="43217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40482" g_stop="40661" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40662" i_stop="41409" i_length="748">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41410" g_stop="41718" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="489" r_length="309" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41719" i_stop="42861" i_length="1143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42862" g_stop="42917" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="545" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E253664" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40482" e_stop="40661"/>
          <exon e_start="41410" e_stop="41718"/>
          <exon e_start="42862" e_stop="42917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCGAATTCATCCCTAGGGCTCGACGCAATCTATAATGGCGAAGCGGAACAAAGAGATGAAAGCGGAATCATAAGGCGTAGACATCTGATGAGCTTTAAGGAGACGCCTATTGGTACAAATATCACTTATGATTGTTCTCCTTCTGGTCCTTGTGTTCCTTGCTCGTACTCCGAAAAGGTTTTCTCTCTTATTTCCTTCGTATTGATAATTGATCATTGTTTTAGATTTGAATTTTATGCATCTTTATCATCAGTTAGCTGAGGCGTATTTGCTTGTAGATTTATATGATCAATTAGGTAGGAAGAACTCCAATTTTGCTTGTTTTAGGAAAAAATATGCCTGAATAGACCAAATGAAAACAGTTGATGAATCAGATTGTAGTTGATCGATAGTACTTTGGAGGTAGAGAAACGTGTAGAGTGTAGACAGTTGACACTACTTTGGAGGTAGAGAAACGTGTAGAGTATGTGCAGACCTTACTACTACCTTGGAGGTAGAGAAATGGGTAGAGTATATGCAGAACTGACCACTACCTTGGAGGTAGAGATGTGAAGTTGTTTCTGATAGACCCTCAGCTCAAGGAAATAACAGACGTAGTTGATCCATAATGAGGTGGTCAAATGCATAACATATTGTTGTTTAATTTATTTATTATATCTAATGTTGTTAATCATAACAAATTTCTCGTGTGGAGAGTTGTATGTATTGATATTCTTAGATTAAATACAGATTAAATGTCAAATTTCTGTCATGGCTATAACATAATTAAGTGAGATAGTAAATTGGAGCGCTTATTGAATTGTATAGGGAGAAGGAGAATGATAATTGTTATTGTCTCAAGTAAGCAAAGTGATGTATAGATACTGCTTGTTTAGGTCGCATTCTTTTAAGTTAAATTTGTGATGTTTTCCCAATGTGCTTTCAGAAAGATGAAAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACGATTCATCCTCGTCAAAGAGTGGAATACATACGTATATAACTTATAGGAGCTGTGTTCTTTCAATAAATGAGGAGAAGCTGTCAGTACTTGGGTTTGAGGTAAGTACATACTTTTTCTGCTTTACATAACTGTCTTGTGGAGAATTATCCAATTTACATTCTGCAACCTGTTTAGCTGTTTCTTTCAATATGGTTGCTGGTTTTAGTATTCAGAAATCATTTCACTGCTATCCAAAAGCAAAACATGAAATTGGATGATTGTGAGATCCATATATTAGAACTAAACAAGTTTTAATAGTGAAAGTTGATGAGGCACTTTATAGAAAAAGAACGTAAGTTATTGAGGTATAGAGAAGTAATTGAAGACCACTCAAGTTAATTGAAGGACTTTGAAAGGAAGGAAGGAGGCTTAATGCATTTCCTCTCTAAATGTGAAAAAATATAACTAGGTAAGTAGAGGGGCATATTGCAATTCGTGAAACTTTCAAAGAAATATTTGAATAATCTGTTATCAGAAAATGGAGAGGATATTATCAGGACTTATTATCCCCAATTTCTGTAGATTCCTCTTGGATTGTCATGTGTAGTCAAAATATAACTTTAGGTTGAAAAGTTCGATACTATTAAATTTAGGTCGACTGACCTAGTCGTCTTGTTTCAAAAACTTTCTGGGTTTTGTTTCCTGAATGCGTGAAACGAACCACTCCTTTGGTGGGGCAAAGTTACCTAGTACATGTTTTGGTGAGAGATAGCAAGTATCCGATCGAATAATTAAGGTATACACAAGTTGGTTAGGACACCATTGCTATCAATTAAAAAAATGATGTGAACCATTTTACAAGCTTGCCTTAGGTATTGGCTGCTCTTATACTGCATAGGGATAAACGAGTTGTGTGGTGTTATTCTCTTTAGAAGTGTGAGATTTTTTAGGTAAAGTCAAAGCTAATTGGGAGATCTTTATCGTGTTTTCATGGATTAACATGTTCATTTCCTTCTTCACGCGTGACTGAACTTTCAAAGTTAGCTGTCTCACTGTGTTTCGATATAATCATAAGAAGGATGATTCTCCCACACAACTTGTGTCAAAAGAAGACCTATTATACTTGCAGAACAGCTCTGTAAAAGAACCTCATGGCTTGAGTTCAAAAACAAGCTCTTTCTTATTCTGTAAATATTTTGGATTTAATTGAGAATATGCCTGATTCTTATGCCAAGCGGTTTAATTGGATCTGCATTATGTAGGTGATTATGCTGGGTTTACTGATTGTCAGTGGTTCAACCATATACTTCAGAAAACG</genome_strand>
        <mrna_strand>TCTCCGAATTTATCCCTAGGGCTCGACGCAATCTATAATGGCGAAGCGGAGCAAAGAGATGAAAGCGGAATCATATGGCGTAGACATCTGATGAGCTTTAAGGAGACGCCTATTGGTACAAATATCACTTATGATTGTTCTCCTTCTGGTCCTTGTGTTCCTTGCTCGTACTCCGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATGAAAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGGCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACGATTCATCCTCGTCAAAGAGTGGAATACATACGTATATAACTTATAGGAGCTGTGTTCTTTCAATAAATGAGGAGAAGCTGTCAGTACTTGGGTTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTATGCTGGGTTTACTGATTGTCAGTGGTTCAACCATATACTTCAGAAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553860" ref_strand="+" ref_description="SGN-E553860 [cTSC-2-H17]">
      <seq>aaaaaagatgaaaagtataggtgcagtgaaactggatatcgtatccctttcaactgtatagagattaaagctagtacaaaggaagtgaaaaacaagaaaggaaagaagaagcgatctgctttggaggacacatatactgcagtaaggccacatgccatgaagcacaatgaacaagctcttacctcctcggtaagacaaagaaatttgctggacaattcatcctcgtcaaagagtggaatacatacgtatataacttataggagctgtgttctttcaataaatgaggagaagctgtcagtacttgggtttgaggtaagtacatactttttctgctttacataactgtcttgtggagaattatccaatttacattctgcaacctgtttagctgtttctttcaatatggttgctggttttagtattcagaaatcatttcactgctatccaaaagcaaaacatgaaattggatgattgtgagatccatatattagaactaaacaagttttaatagtgaaagttgatgaggcactttatagaaaaagaacgtaagttattgaggtatagagaagtaattgaagaccactcaagttaattgaaggactttgaaaggaaggaaggaggcttaatgcatttcctctctaaatgtgaaaaaatataactaggtaagtagaggggcatattgcaattcgtgaaactttcaaagaaatatttgaataatctgttatcagaaaatggagaggatattatcaggacttattatccccaatttctgtagattcctcttggattgtcatgtgtagtcaaaatataactttaggtttgaaaagttcgatactattaaatttaggtcgactgacctagtcgtctggtttcaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="41108" stop="42584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41410" g_stop="42284" g_length="875"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="879" r_length="876" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E553860" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41410" e_stop="42284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGAAAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACGATTCATCCTCGTCAAAGAGTGGAATACATACGTATATAACTTATAGGAGCTGTGTTCTTTCAATAAATGAGGAGAAGCTGTCAGTACTTGGGTTTGAGGTAAGTACATACTTTTTCTGCTTTACATAACTGTCTTGTGGAGAATTATCCAATTTACATTCTGCAACCTGTTTAGCTGTTTCTTTCAATATGGTTGCTGGTTTTAGTATTCAGAAATCATTTCACTGCTATCCAAAAGCAAAACATGAAATTGGATGATTGTGAGATCCATATATTAGAACTAAACAAGTTTTAATAGTGAAAGTTGATGAGGCACTTTATAGAAAAAGAACGTAAGTTATTGAGGTATAGAGAAGTAATTGAAGACCACTCAAGTTAATTGAAGGACTTTGAAAGGAAGGAAGGAGGCTTAATGCATTTCCTCTCTAAATGTGAAAAAATATAACTAGGTAAGTAGAGGGGCATATTGCAATTCGTGAAACTTTCAAAGAAATATTTGAATAATCTGTTATCAGAAAATGGAGAGGATATTATCAGGACTTATTATCCCCAATTTCTGTAGATTCCTCTTGGATTGTCATGTGTAGTCAAAATATAACTTTAGG-TTGAAAAGTTCGATACTATTAAATTTAGGTCGACTGACCTAGTCGTCTTGTTTCAAAAAC</genome_strand>
        <mrna_strand>AAAGATGAAAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACAATTCATCCTCGTCAAAGAGTGGAATACATACGTATATAACTTATAGGAGCTGTGTTCTTTCAATAAATGAGGAGAAGCTGTCAGTACTTGGGTTTGAGGTAAGTACATACTTTTTCTGCTTTACATAACTGTCTTGTGGAGAATTATCCAATTTACATTCTGCAACCTGTTTAGCTGTTTCTTTCAATATGGTTGCTGGTTTTAGTATTCAGAAATCATTTCACTGCTATCCAAAAGCAAAACATGAAATTGGATGATTGTGAGATCCATATATTAGAACTAAACAAGTTTTAATAGTGAAAGTTGATGAGGCACTTTATAGAAAAAGAACGTAAGTTATTGAGGTATAGAGAAGTAATTGAAGACCACTCAAGTTAATTGAAGGACTTTGAAAGGAAGGAAGGAGGCTTAATGCATTTCCTCTCTAAATGTGAAAAAATATAACTAGGTAAGTAGAGGGGCATATTGCAATTCGTGAAACTTTCAAAGAAATATTTGAATAATCTGTTATCAGAAAATGGAGAGGATATTATCAGGACTTATTATCCCCAATTTCTGTAGATTCCTCTTGGATTGTCATGTGTAGTCAAAATATAACTTTAGGTTTGAAAAGTTCGATACTATTAAATTTAGGTCGACTGACCTAGTCGTCTGGTTTCAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276757" ref_strand="+" ref_description="SGN-E276757 [cLEN-14-N4]">
      <seq>aaagtataggtgcagtgaaactggatatcgtatccctttcaactgtatagagattaaagctagtacaaaggaagtgaaaaacaagaaaggaaagaagaagcgatctgctttggaggacacatatactgcagtaaggccacatgccatgaagcacaatgaacaagctcttacctcctcggtaagacaaagaaatttgctggacgattcatcctcgtcaaagagtggaatacatacgtatataacttataggagctgtgttctttcaataaatgaggagaagctgtcagtacttgggtttgaggtgattatgctgggtttactgattgtcagtggttcaaccatatacttcagaaaacggcgagcaggcgctgtatctggtgctgggcctgtcagacttccaactagttctcgattctaactaaaaatctgtacgtttgcagcttaggattcttttttaatcttcttactttcttgattcaaggttgcaatcctagtagatttgttggttaacatgtttgaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="41118" stop="43383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41418" g_stop="41718" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41719" i_stop="42861" i_length="1143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42862" g_stop="43083" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="523" r_length="222" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E276757" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41418" e_stop="41718"/>
          <exon e_start="42862" e_stop="43083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACGATTCATCCTCGTCAAAGAGTGGAATACATACGTATATAACTTATAGGAGCTGTGTTCTTTCAATAAATGAGGAGAAGCTGTCAGTACTTGGGTTTGAGGTAAGTACATACTTTTTCTGCTTTACATAACTGTCTTGTGGAGAATTATCCAATTTACATTCTGCAACCTGTTTAGCTGTTTCTTTCAATATGGTTGCTGGTTTTAGTATTCAGAAATCATTTCACTGCTATCCAAAAGCAAAACATGAAATTGGATGATTGTGAGATCCATATATTAGAACTAAACAAGTTTTAATAGTGAAAGTTGATGAGGCACTTTATAGAAAAAGAACGTAAGTTATTGAGGTATAGAGAAGTAATTGAAGACCACTCAAGTTAATTGAAGGACTTTGAAAGGAAGGAAGGAGGCTTAATGCATTTCCTCTCTAAATGTGAAAAAATATAACTAGGTAAGTAGAGGGGCATATTGCAATTCGTGAAACTTTCAAAGAAATATTTGAATAATCTGTTATCAGAAAATGGAGAGGATATTATCAGGACTTATTATCCCCAATTTCTGTAGATTCCTCTTGGATTGTCATGTGTAGTCAAAATATAACTTTAGGTTGAAAAGTTCGATACTATTAAATTTAGGTCGACTGACCTAGTCGTCTTGTTTCAAAAACTTTCTGGGTTTTGTTTCCTGAATGCGTGAAACGAACCACTCCTTTGGTGGGGCAAAGTTACCTAGTACATGTTTTGGTGAGAGATAGCAAGTATCCGATCGAATAATTAAGGTATACACAAGTTGGTTAGGACACCATTGCTATCAATTAAAAAAATGATGTGAACCATTTTACAAGCTTGCCTTAGGTATTGGCTGCTCTTATACTGCATAGGGATAAACGAGTTGTGTGGTGTTATTCTCTTTAGAAGTGTGAGATTTTTTAGGTAAAGTCAAAGCTAATTGGGAGATCTTTATCGTGTTTTCATGGATTAACATGTTCATTTCCTTCTTCACGCGTGACTGAACTTTCAAAGTTAGCTGTCTCACTGTGTTTCGATATAATCATAAGAAGGATGATTCTCCCACACAACTTGTGTCAAAAGAAGACCTATTATACTTGCAGAACAGCTCTGTAAAAGAACCTCATGGCTTGAGTTCAAAAACAAGCTCTTTCTTATTCTGTAAATATTTTGGATTTAATTGAGAATATGCCTGATTCTTATGCCAAGCGGTTTAATTGGATCTGCATTATGTAGGTGATTATGCTGGGTTTACTGATTGTCAGTGGTTCAACCATATACTTCAGAAAACGGCGAGCAGGCGCTGTATCTGGTGCTGGGCCTGTCAGACTTCCAACTAGTTCTCGATTCTAACTAAAAATCTGTACGTTTGCAGCTTAGGATTCTTTTTTAATCTTCTTACTTTCTTGATTCAAGGTTGCAATCCTAGTAGATTTGTTGTTTAACATGTTTGAATGC</genome_strand>
        <mrna_strand>AAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACGATTCATCCTCGTCAAAGAGTGGAATACATACGTATATAACTTATAGGAGCTGTGTTCTTTCAATAAATGAGGAGAAGCTGTCAGTACTTGGGTTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTATGCTGGGTTTACTGATTGTCAGTGGTTCAACCATATACTTCAGAAAACGGCGAGCAGGCGCTGTATCTGGTGCTGGGCCTGTCAGACTTCCAACTAGTTCTCGATTCTAACTAAAAATCTGTACGTTTGCAGCTTAGGATTCTTTTTTAATCTTCTTACTTTCTTGATTCAAGGTTGCAATCCTAGTAGATTTGTTGGTTAACATGTTTGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274863" ref_strand="+" ref_description="SGN-E274863 [cLEN-13-N4]">
      <seq>aaagtataggtgcagtgaaactggatatcgtatccctttcaactgtatagagattaaagctagtacaaaggaagtgaaaaacaagaaaggaaagaagaagcgatctgctttggaggacacatatactgcagtaaggccacatgccatgaagcacaatgaacaagctcttacctcctcggtaagacaaagaaatttgctggacgattcatcctcgtcaaagagtggaatacatacgtatataacttataggagctgtgttctttcaataaatgaggagaagctgtcagtacttgggtttgaggtgattatgctgggtttactgattgtcagtggttcaaccatatacttcagaaaacggcgagcaggcgctgtatctggtgctgggcctgtcagacttccaactagttctcgattctaactaaaaatctgtacgtttgcagcttaagattcttttttaatcttcttactttcttgattcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="41118" stop="43340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41418" g_stop="41718" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41719" i_stop="42861" i_length="1143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42862" g_stop="43040" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="480" r_length="179" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E274863" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41418" e_stop="41718"/>
          <exon e_start="42862" e_stop="43040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACGATTCATCCTCGTCAAAGAGTGGAATACATACGTATATAACTTATAGGAGCTGTGTTCTTTCAATAAATGAGGAGAAGCTGTCAGTACTTGGGTTTGAGGTAAGTACATACTTTTTCTGCTTTACATAACTGTCTTGTGGAGAATTATCCAATTTACATTCTGCAACCTGTTTAGCTGTTTCTTTCAATATGGTTGCTGGTTTTAGTATTCAGAAATCATTTCACTGCTATCCAAAAGCAAAACATGAAATTGGATGATTGTGAGATCCATATATTAGAACTAAACAAGTTTTAATAGTGAAAGTTGATGAGGCACTTTATAGAAAAAGAACGTAAGTTATTGAGGTATAGAGAAGTAATTGAAGACCACTCAAGTTAATTGAAGGACTTTGAAAGGAAGGAAGGAGGCTTAATGCATTTCCTCTCTAAATGTGAAAAAATATAACTAGGTAAGTAGAGGGGCATATTGCAATTCGTGAAACTTTCAAAGAAATATTTGAATAATCTGTTATCAGAAAATGGAGAGGATATTATCAGGACTTATTATCCCCAATTTCTGTAGATTCCTCTTGGATTGTCATGTGTAGTCAAAATATAACTTTAGGTTGAAAAGTTCGATACTATTAAATTTAGGTCGACTGACCTAGTCGTCTTGTTTCAAAAACTTTCTGGGTTTTGTTTCCTGAATGCGTGAAACGAACCACTCCTTTGGTGGGGCAAAGTTACCTAGTACATGTTTTGGTGAGAGATAGCAAGTATCCGATCGAATAATTAAGGTATACACAAGTTGGTTAGGACACCATTGCTATCAATTAAAAAAATGATGTGAACCATTTTACAAGCTTGCCTTAGGTATTGGCTGCTCTTATACTGCATAGGGATAAACGAGTTGTGTGGTGTTATTCTCTTTAGAAGTGTGAGATTTTTTAGGTAAAGTCAAAGCTAATTGGGAGATCTTTATCGTGTTTTCATGGATTAACATGTTCATTTCCTTCTTCACGCGTGACTGAACTTTCAAAGTTAGCTGTCTCACTGTGTTTCGATATAATCATAAGAAGGATGATTCTCCCACACAACTTGTGTCAAAAGAAGACCTATTATACTTGCAGAACAGCTCTGTAAAAGAACCTCATGGCTTGAGTTCAAAAACAAGCTCTTTCTTATTCTGTAAATATTTTGGATTTAATTGAGAATATGCCTGATTCTTATGCCAAGCGGTTTAATTGGATCTGCATTATGTAGGTGATTATGCTGGGTTTACTGATTGTCAGTGGTTCAACCATATACTTCAGAAAACGGCGAGCAGGCGCTGTATCTGGTGCTGGGCCTGTCAGACTTCCAACTAGTTCTCGATTCTAACTAAAAATCTGTACGTTTGCAGCTTAGGATTCTTTTTTAATCTTCTTACTTTCTTGATTCAA</genome_strand>
        <mrna_strand>AAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACGATTCATCCTCGTCAAAGAGTGGAATACATACGTATATAACTTATAGGAGCTGTGTTCTTTCAATAAATGAGGAGAAGCTGTCAGTACTTGGGTTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTATGCTGGGTTTACTGATTGTCAGTGGTTCAACCATATACTTCAGAAAACGGCGAGCAGGCGCTGTATCTGGTGCTGGGCCTGTCAGACTTCCAACTAGTTCTCGATTCTAACTAAAAATCTGTACGTTTGCAGCTTAAGATTCTTTTTTAATCTTCTTACTTTCTTGATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E436456" ref_strand="-" ref_description="SGN-E436456 [STM-63-C17]">
      <seq>ttggacaggatatagcatctcagtttaatcacactaatggtctctcactgatttctagagcccatcagcttgtcatggaaggttttaattggtgtcaggaaaagaatgttgtaacggtatttagtgctccaaactattgttatcgctgtggtaatatggctgcaatcctagaaataagtgaaaacatggagcaaaatttccttcagtttgacccagctccacggcagattgagcctgatactacaaggaagactcccgactacttcttgtgatccgaatacttgagctgactgtttgtagcccatcaatatcatatcttgtagatgtgtcttaaaaaaagttatgttatttgaggattagtagcatcatcattcttttgtttggagttaactctgctgctggcttttaacatatgcccgtagattcgccagtgttttgacaaaagccctcagtgtcttgtcgtgtatacttttttccaaaaagaagcagcaataacatgatacattgtgattttaaaaaaaaaaaaaaaaaaaaactcgagggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="-" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="44648" stop="21788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44348" g_stop="44251" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44250" i_stop="44116" i_length="135">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44115" g_stop="43694" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="513" r_length="415" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43693" i_stop="43031" i_length="663">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43030" g_stop="42992" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="551" r_length="38" r_score="0.538"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="-" ref_id="SGN-E436456" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436456" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44348" e_stop="44251"/>
          <exon e_start="44115" e_stop="43694"/>
          <exon e_start="43030" e_stop="42992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCTCACTGATTTCTAGAGCCCATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAGGTCTGTAGATATAAACCGAACACTTTCTTCCCTACCTCTAATGGAAAAATTCCACTTTTTGTTCATTTCAGTGGAACTTCTTGTTCCTCAGGTATTAGTTTGTAGTTTTAACATGGTATTGGTTGTTTTTGGCAGGATAAGAATGTTGTAACAGTATTTAGTGCTCCAAACTATTGTTATCGCTGTGGTAATATGGCTGCAATCCTAGAAATAAGTGAAAACATGGAGCAGAATTTCCTTCAGTTTGACCCAGCTCCACGACAGATTGAGCCTGATACTACAAGGAAGACTCCAGACTACTTCTTGTAATCCGAATACTTGAGCTGACTGTTTGTAGCCCATCAGTATCGTATCTTGTAGATGTGTCTTTAAAAAAAAAGGTTATGTTATTTGAGGATTAGTATCATCATCATTGTTTTGTTTGGAGTTTGCTCTGCTGCTGGCTTTTAACATATGCCCGTAGATTCGCCAGAGTTTTGACAAAAAGCCCTTAGTGTCTCTTGTCTCGTATAATTTTTTGCAAAAAGAAGCAGCAATAACATGGTACATTGTGATTTGTTATTAAAGTTTATCGTAGAAAGCAGGTTCTTTCAGGTACCAATTTCTCTGCCAATGGCTATTGGCGCCTGAATCTGTTGATGGAACCAATTAATTTAGGTTTTGGCTTTCCTTATAAAACATTTTTTACCATTTGCTTTTGGTAATTTTCCTAAAGGAAACGAAGAACTTGTTTGAGGCATGTGTTTGTAGATAATTGTATCTTCCCTAGTCATTTTATGACATATGTGGTGAGTAGTCAGTCTTACTTATACTACATACCCAGGGGCAAAAGTGTTCATAAAAATAATTTCTAGATAAGCTCACATACATGGTTCTATTCTCCATAAAAGTAAAATTCTCGTCTTTAACTTGTATACATTTGTCATTTCGAAATAAGAGTTTAAACATATACGAGGGGGAAAAACTAAATGAATTCGAAAATTCTAATTTTGCTGTGAACCATACAAAGATGCGAAGGGAAAATAGTAGACTTAGAATGTTCTGGATTCAAAAGGTTCGAAGGACTATACAGTACAAACTGGATATCTAGTATCGAGTTACTCTTCAAACTCTCTATTTTCTTCTAACTATAAAATTGATAGAATCAATTACTACAACATTTTACAAGCATTCAAACATGTTAAACAACAAATCTACTAGGATTGCAACCTTGAATCAAGAAAGTAAGAAGATTAAAAAAGAATCCTAAGCTGCAAACG</genome_strand>
        <mrna_strand>TTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCTCACTGATTTCTAGAGCCCATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAG.......................................................................................................................................GAAAAGAATGTTGTAACGGTATTTAGTGCTCCAAACTATTGTTATCGCTGTGGTAATATGGCTGCAATCCTAGAAATAAGTGAAAACATGGAGCAAAATTTCCTTCAGTTTGACCCAGCTCCACGGCAGATTGAGCCTGATACTACAAGGAAGACTCCCGACTACTTCTTGTGATCCGAATACTTGAGCTGACTGTTTGTAGCCCATCAATATCATATCTTGTAGATGTGTC-TT--AAAAAAA-GTTATGTTATTTGAGGATTAGTAGCATCATCATTCTTTTGTTTGGAGTTAACTCTGCTGCTGGCTTTTAACATATGCCCGTAGATTCGCCAGTGTTTTGAC-AAAAGCCCTCAGTG--TCTTGTCGTGTATACTTTTTTCCAAAAAGAAGCAGCAATAACATGATACATTGTGATTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-AAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746380" ref_strand="+" ref_description="SGN-E746380 [GI|47105582]">
      <seq>gacagtagagagaagcttcgcatgaatggagacgaatttcagaaacaggagatgattcagagattgaaaccctagtttcttcatcaatgttccaatcgttaatttctgtttgattttaatcttcggcgtgcaaaaactccgattctgttggtcaatttcatagcaattggattttacctcgattcgatctgaggacttttgggtctttttttgctaatcgaagcggtgaggaatatttaggcaggtgattgtagaggataattttgtttgaaaaaatgccgtcgcacgcggatgtagatcggcagatcgagcaattgatggagtgcaagccgttatcggaggcggaggtgaagacgttgtgtgaacaagcaagggcgatactagtggaggaatggaatgtgcaaccggtgaaatgtccggtgacggtgtgcggtgatatccatggacagttttacgatctgattgagctttttcgaatcggcggcaacgctcctgatactaattatctcttcatgggagattatgttggttcgttatagagatagaatcacaattcttaggggaaaccatgaaagccgacagatcactcaagtgtatggtttttatgatgaatgtttgaggaagtatggaaatgccaatgtttggaagtatttcactgatctctttgattatctaccattgacggcactcatagagagtcagatattctgtttgcatggaggactctcaccatcccttgatacacttgataacatccgagcactggaccgtatacaagaggtgccacatgaagggccgatgtgtgatctcctatggtctgatccagacgatcgctgtggttggggaatatcacctcggggggctggttacacatttggacaggatatagcatctcagtttaatcacactaatggtctctcactgatttctagagcccatcagcttgtcatggaaggttttaattggtgtcaggataagaatgttgtaacagtatttagtgctccaaactattgttatcgctgtggtaatatggctgcaatcctagaaataagtgaaaacatggagcagaatttccttcagtttgacccagctccacgacagattgagcctgatactacaaggaagactccagactacttcttgtaatccgaatacttgagctgactgtttgtagcccatcagtatcgtatcttgtagatgtgtctttaaaaaaaaaggttatgttatttgaggattagtatcatcatcattgttttgtttggagtttgctctgctgctggcttttaacatatgcccgtagattcgccagagttttgacaaaaagcccttagtgtctcttgtctcgtataattttttgcaaaaagaagcagcaataacatggtacattgtgatttgttattaaagtttatcgtagaaagcaggttctttcaggtaccaatttctctgccaatggctattggcgcctgaatctgttgatagaaccaattaatttaggttttggctttccttataaaacattttttaccattcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="-" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="48832" stop="43259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48533" g_stop="48006" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48005" i_stop="47052" i_length="954">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47051" g_stop="46987" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="593" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46986" i_stop="45245" i_length="1742">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45244" g_stop="45136" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="702" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45135" i_stop="45053" i_length="83">
            <donor d_prob="0.754" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45052" g_stop="44975" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="780" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44974" i_stop="44443" i_length="532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44442" g_stop="44251" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="972" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44250" i_stop="44116" i_length="135">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44115" g_stop="43558" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="973" r_stop="1530" r_length="558" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1531" polyA_stop="1545"/>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="-" ref_id="SGN-E746380" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1530</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48533" e_stop="48006"/>
          <exon e_start="47051" e_stop="46987"/>
          <exon e_start="45244" e_stop="45136"/>
          <exon e_start="45052" e_stop="44975"/>
          <exon e_start="44442" e_stop="44251"/>
          <exon e_start="44115" e_stop="43558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAGAGAGAAGCTTCGCATGAATGGAGACGAATTTCAGAAACAGGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTGGTGAGTTTTGGTGATTAGGTTTCATTTTGTGATAGGAATTTGCATATGATTTGTTGGATTTTTTTATGCATTTAATGATTTGTTGTAGTGACATAGGTGGAATGTGAATGGACATAAATAGGATGTAGAAATGAGTGTTTCTGCTAATGTAAGCAGCACTTGAAGGATAGTAAAGTTTGTGCTTTTGTGTATCAAGTAGATTGTGAAGTGTAAGGATGCTGCAAAGTAGCAGCTTTATGGTGGTTATTTTGTGGTTTGCCGTGATTTCAGTATTGTATTTCTCAAAGTATTCATGATAAGGATGATATGTGGTTTGGCTGTTTGTTCATTTATTGGTAGTGTTACTATGATGTGTCACAAAAATGAAGCTTTATTTTGATCTATTTGTCGTTTATCCTCGAGAATGATGACGCGTGGTTGTGATGTGGATCTCTAATGTGCTTGGTGGTTCGAATATGACAAAGTAACGTCATGGCATTGATATAATGTTTGGAGGCAAATGTGGGAGATGTTTCTCTTCATTTGGTATATTTCTTTCGGTGCCAAACGCAACTCATTTTCATTTGTTATAGTTTAACCGAAAAGGCAGTGTTCTCTCAACTTACATCTGATAAGCATGGGTTTCATAAAATGACTGTCTTTTGTTTAAATGACTGTTTTGATAGTAGTTAGAGGCTTCCTTTTAATTTATTTTTCCCAAATATTTTTGCATCTAAGGTGGATTTTATCATATACATCGATGACAATGTACATTTTATTCACCTTTTACTGTTTCTTTTGATTGTTCCCTATCTTACCTCTTCATGCTTACTTATTTGAATGTTGACTAGTACCTTGGTTTCCTTGTTGGTCAAGTACATTAGCATTCATTGTTTTATCATTAATAATTGCCTAATTAATGCAGACCGTGGATACTATTCTGTCGAGACTGTCTCACTATTGGTTGCTTTGAAGGTTCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCATGAAAGCCGACAGATCACTCAAGTGTGAGTTACTTAATTTTGTTCATATTGAAGTGCGTAAGTGAGGTTGTCTGAAAAGATAATTGGTCTTAGTTAACAGCTGATATTCAGGTGTTCCTTCTTTTCCATTGCTTAAATGATCTGGTTTATGTATGACATTGGATGTTTTATGTTTATGCAATTCTACTTTATCCAAAAAAGAAGAAGAAGATGTTTCTGCAATTTTCTTATGTTTTCCATTTAATCTACTGAACTGTTTAATTTTCCAATTACAAGAATTTAGAACTTAATATGAAATGCTGCCCAAGTATGTAAATGTTTTCCCATTTGGTGCACTCTTTATATTTGGTAATGGTCTACTTTATGCTGTTTGGTGTATGATACTTTTATATGTGTTCCTGTCACAGTGTCACTTGATTTTTACTTGTATAGGATGTTCCTAGATGCCACTTCCTTTAAAATTTATCCAGTTTGTTGGATTTCTCTTATTTTGACTTCCTGCAGTGTTTAGTATCCTCTTTGCTTCTCCTTGGGGTTGGGAAGAGTAGCAATGTAAATTCTACGCTTATATGGCTCAAATATCCTTTCTTGAATGTCTATGCTCTTATCGCACTCAAGCAGTGAGTATAATGGATCGATGTTTCTCTTAAATGTACCCAGTACAACTCTTCTTTCCATTTATCACCCTCTTTCCCGAAATAAAAGAAGATAAAAAAGGAACATGGAGGTCAGGCATAAGAATTCAGGTTATCAACTCCTGGTTTTCAGTAAGAAGTTGAAGAGAGCAAGAAGACAAACGTGTTTCTTGAATTCTATGCAGCAAAAACATGTACTTAGGTAATGTAAATGAGAAGGGAGCAATACTTCTGGAGAACCAATGATGGCCTTCTCATCCCCATGCTATTTGACAAGACATGTTTGTTCATTGCTTTGGTTTTCCAGCTCCTGTGAACCTTGATCACTGATAATGATTAGTTTTTTTTCTTTCTTATTTCTTAGTATTTTGGGGGATTTAACCCTCACCAACAGGTGAAAATTCAGGTAGCCAACCAACTGGACTACTAAAATTCCCAAGGATTAGGTTGATTAAGCTTTTTATAGAAATTGGTCTAGTTGAACTGCTGGGATAATGTAAGAACTATTATAATTGTTCCTGGCGAGTGAGGTTACCATAACAAGCAAAATTGTTTATAAGGGTCTATGCGAAGATCATGTCTGCCTGAAGTCAAGCTCCTATTATTGCCACTGACCACCCCTAGTCTCTGAAGTCATGAAGCTCTTTGAATAGAAAAACTTAGCAATCAAATTCAACAGGAGGATATCGTAACTGAGTAGTTGGACAATGATGCCATATTATACGCTTGAATGTTAAAGTTGCTAAATCTTTTAGGAAGTGTATCTTCCTTCACATGTGTTTTTAGATATCTTTTAACCAAAGGATTTGCATTGTTAACTTGAGTCACACTTGGGCATTACACACCCTCCATTTTTGCGTTGATAATTCTTCAGAGCACAAGGTTCACTTAAGCGACTTTGCTCTTTAACCACTCGATAGATGTTTATGGTTACTTATCAATGAAGGTATCTCTACACAATCCTTCTAGTTTTTTATTTGACAAGTACTTTTTGGGCAGTCTTGTGGGGATTAATCATCTATGCTACTGCTTCTCATGATCAGCTTTTCCCTATTTGTTTTATGCTGAATACAATATGACTGCAGGTTCTAGTCATGTTTGCATTAATTGACAGATACCTTTTCCTGTTAGGTATGGTTTTTATGATGAATGTTTGAGGAAGTATGGAAATGCCAATGTTTGGAAGTATTTCACTGATCTCTTTGATTATCTACCATTGACGGCACTCATAGAGAGTCAGGTTTGAGATCTTACTGAACTGGCAATTCACTTGAACATTATTATTGGCGAGTTTTAACAAGCCTAATTTACTCAAAATTGCAGATATTCTGTTTGCATGGAGGACTCTCACCATCCCTTGATACACTTGATAACATCCGAGCACTGGACCGTATACAAGAGGTATAGAGATAGTTGTGTAATTCAAACTTTACATGTTCATGATATGTTAAATTAATCCGCGTTGTATTTTGTCACCGCCTGCTCTCCCTCCTCTTGCTCTACCCACCACAGCATCTATCAGCTATCAAGTTAATTTCCTATTTACCTAACAAAATTGATCATTAAGGCACAACAGGACTACGTATGTAGGTTACATCCTTTTTATTCAACCTGACTACAGATATAACCAAACAAATCAAGGCTTGAACAGGAAGAAAACTATTTATTTCTGTATGATGAGTTCGAAAGAGTCTCATTTTCTTTTCTAATGTGTTGTAGAATAGGTTTGGCAATGTTCTGTATATGTTACATAGAGGCTTGTAGTTAAGTTTGTTCAACAGTGAATGTGATCCACTTACATAACACTTCCTATCTTTTAGTTGCTCGGACGGCACCTATTTGCTCTAGTCACTTCTATTGTTTCATGATTTTTATATCTTTTTATGGCAATGCTACTGATCCCGGACTATTGCTTCTTTGTTGTGGTTGTTAGGTGCCACATGAAGGGCCGATGTGTGATCTCCTATGGTCTGATCCAGACGATCGCTGTGGTTGGGGAATATCACCTCGGGGGGCTGGTTACACATTTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCTCACTGATTTCTAGAGCCCATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAGGTCTGTAGATATAAACCGAACACTTTCTTCCCTACCTCTAATGGAAAAATTCCACTTTTTGTTCATTTCAGTGGAACTTCTTGTTCCTCAGGTATTAGTTTGTAGTTTTAACATGGTATTGGTTGTTTTTGGCAGGATAAGAATGTTGTAACAGTATTTAGTGCTCCAAACTATTGTTATCGCTGTGGTAATATGGCTGCAATCCTAGAAATAAGTGAAAACATGGAGCAGAATTTCCTTCAGTTTGACCCAGCTCCACGACAGATTGAGCCTGATACTACAAGGAAGACTCCAGACTACTTCTTGTAATCCGAATACTTGAGCTGACTGTTTGTAGCCCATCAGTATCGTATCTTGTAGATGTGTCTTTAAAAAAAAAGGTTATGTTATTTGAGGATTAGTATCATCATCATTGTTTTGTTTGGAGTTTGCTCTGCTGCTGGCTTTTAACATATGCCCGTAGATTCGCCAGAGTTTTGACAAAAAGCCCTTAGTGTCTCTTGTCTCGTATAATTTTTTGCAAAAAGAAGCAGCAATAACATGGTACATTGTGATTTGTTATTAAAGTTTATCGTAGAAAGCAGGTTCTTTCAGGTACCAATTTCTCTGCCAATGGCTATTGGCGCCTGAATCTGTTGATGGAACCAATTAATTTAGGTTTTGGCTTTCCTTATAAAACATTTTTTACCATTT</genome_strand>
        <mrna_strand>GACAGTAGAGAGAAGCTTCGCATGAATGGAGACGAATTTCAGAAACAGGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCATGAAAGCCGACAGATCACTCAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGTTTTTATGATGAATGTTTGAGGAAGTATGGAAATGCCAATGTTTGGAAGTATTTCACTGATCTCTTTGATTATCTACCATTGACGGCACTCATAGAGAGTCAG...................................................................................ATATTCTGTTTGCATGGAGGACTCTCACCATCCCTTGATACACTTGATAACATCCGAGCACTGGACCGTATACAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCACATGAAGGGCCGATGTGTGATCTCCTATGGTCTGATCCAGACGATCGCTGTGGTTGGGGAATATCACCTCGGGGGGCTGGTTACACATTTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCTCACTGATTTCTAGAGCCCATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAG.......................................................................................................................................GATAAGAATGTTGTAACAGTATTTAGTGCTCCAAACTATTGTTATCGCTGTGGTAATATGGCTGCAATCCTAGAAATAAGTGAAAACATGGAGCAGAATTTCCTTCAGTTTGACCCAGCTCCACGACAGATTGAGCCTGATACTACAAGGAAGACTCCAGACTACTTCTTGTAATCCGAATACTTGAGCTGACTGTTTGTAGCCCATCAGTATCGTATCTTGTAGATGTGTCTTTAAAAAAAAAGGTTATGTTATTTGAGGATTAGTATCATCATCATTGTTTTGTTTGGAGTTTGCTCTGCTGCTGGCTTTTAACATATGCCCGTAGATTCGCCAGAGTTTTGACAAAAAGCCCTTAGTGTCTCTTGTCTCGTATAATTTTTTGCAAAAAGAAGCAGCAATAACATGGTACATTGTGATTTGTTATTAAAGTTTATCGTAGAAAGCAGGTTCTTTCAGGTACCAATTTCTCTGCCAATGGCTATTGGCGCCTGAATCTGTTGATAGAACCAATTAATTTAGGTTTTGGCTTTCCTTATAAAACATTTTTTACCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E436455" ref_strand="+" ref_description="SGN-E436455 [STM-63-C17]">
      <seq>gtttttatgatgaatgcttgaggaagtatggaaatgctaatgtttggaagtatttcactgatctctttgattttctaccattaacggcactcatagagagtcagatattctgtttgcatggaggactctcaccatcccttgatacactcgataacatccgagcactggaccgtatacaagaggtgccacatgaagggccgatgtgtgatctcctatggtctgatccagacgatcgctgtggttggggaatatcacctcggggggctggttacacatttggacaggatatagcatctcagtttaatcacactaatggtctctcactgatttctagagcccatcagcttgtcatggaaggttttaattggtgtcaggaaaagaatgttgtaacggtatttagtgctccaaactattgttatcgctgtggtaatatggctgcaatcctagaaataagtgaaaacatggagcaaaatttccttcagtttgacccagctccacggcagattgagcctgatactacaaggaagactcccgactacttcttgtgatccgaatacttgagctgactgtttgtagcccatcaatatcatatcttgtagatgtgtcttaaaaaaagttatgttatttgaggattagtagcatcatcattcttttgtttggagttaactctgctgctggcttttacatatgcccgtagattcgccagtggtttgacaaaagcctcagtgtcttgtcgtgtatacttttttccaaaagaagcagcaatacatgatacattgtgatttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="-" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="45539" stop="43385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45239" g_stop="45136" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45135" i_stop="45053" i_length="83">
            <donor d_prob="0.754" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45052" g_stop="44975" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="182" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44974" i_stop="44443" i_length="532">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44442" g_stop="44251" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="374" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44250" i_stop="44116" i_length="135">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44115" g_stop="43681" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="798" r_length="424" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="-" ref_id="SGN-E436455" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45239" e_stop="45136"/>
          <exon e_start="45052" e_stop="44975"/>
          <exon e_start="44442" e_stop="44251"/>
          <exon e_start="44115" e_stop="43681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTATGATGAATGTTTGAGGAAGTATGGAAATGCCAATGTTTGGAAGTATTTCACTGATCTCTTTGATTATCTACCATTGACGGCACTCATAGAGAGTCAGGTTTGAGATCTTACTGAACTGGCAATTCACTTGAACATTATTATTGGCGAGTTTTAACAAGCCTAATTTACTCAAAATTGCAGATATTCTGTTTGCATGGAGGACTCTCACCATCCCTTGATACACTTGATAACATCCGAGCACTGGACCGTATACAAGAGGTATAGAGATAGTTGTGTAATTCAAACTTTACATGTTCATGATATGTTAAATTAATCCGCGTTGTATTTTGTCACCGCCTGCTCTCCCTCCTCTTGCTCTACCCACCACAGCATCTATCAGCTATCAAGTTAATTTCCTATTTACCTAACAAAATTGATCATTAAGGCACAACAGGACTACGTATGTAGGTTACATCCTTTTTATTCAACCTGACTACAGATATAACCAAACAAATCAAGGCTTGAACAGGAAGAAAACTATTTATTTCTGTATGATGAGTTCGAAAGAGTCTCATTTTCTTTTCTAATGTGTTGTAGAATAGGTTTGGCAATGTTCTGTATATGTTACATAGAGGCTTGTAGTTAAGTTTGTTCAACAGTGAATGTGATCCACTTACATAACACTTCCTATCTTTTAGTTGCTCGGACGGCACCTATTTGCTCTAGTCACTTCTATTGTTTCATGATTTTTATATCTTTTTATGGCAATGCTACTGATCCCGGACTATTGCTTCTTTGTTGTGGTTGTTAGGTGCCACATGAAGGGCCGATGTGTGATCTCCTATGGTCTGATCCAGACGATCGCTGTGGTTGGGGAATATCACCTCGGGGGGCTGGTTACACATTTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCTCACTGATTTCTAGAGCCCATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAGGTCTGTAGATATAAACCGAACACTTTCTTCCCTACCTCTAATGGAAAAATTCCACTTTTTGTTCATTTCAGTGGAACTTCTTGTTCCTCAGGTATTAGTTTGTAGTTTTAACATGGTATTGGTTGTTTTTGGCAGGATAAGAATGTTGTAACAGTATTTAGTGCTCCAAACTATTGTTATCGCTGTGGTAATATGGCTGCAATCCTAGAAATAAGTGAAAACATGGAGCAGAATTTCCTTCAGTTTGACCCAGCTCCACGACAGATTGAGCCTGATACTACAAGGAAGACTCCAGACTACTTCTTGTAATCCGAATACTTGAGCTGACTGTTTGTAGCCCATCAGTATCGTATCTTGTAGATGTGTCTTTAAAAAAAAAGGTTATGTTATTTGAGGATTAGTATCATCATCATTGTTTTGTTTGGAGTTTGCTCTGCTGCTGGCTTTTAACATATGCCCGTAGATTCGCCAGAGTTTTGACAAAAAGCCCTTAGTGTCTCTTGTCTCGTATAATTTTTTGCAAAAAGAAGCAGCAATAACATGGTACATTGTGATTTGTTATTAAAGTTT</genome_strand>
        <mrna_strand>GTTTTTATGATGAATGCTTGAGGAAGTATGGAAATGCTAATGTTTGGAAGTATTTCACTGATCTCTTTGATTTTCTACCATTAACGGCACTCATAGAGAGTCAG...................................................................................ATATTCTGTTTGCATGGAGGACTCTCACCATCCCTTGATACACTCGATAACATCCGAGCACTGGACCGTATACAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCACATGAAGGGCCGATGTGTGATCTCCTATGGTCTGATCCAGACGATCGCTGTGGTTGGGGAATATCACCTCGGGGGGCTGGTTACACATTTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCTCACTGATTTCTAGAGCCCATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAG.......................................................................................................................................GAAAAGAATGTTGTAACGGTATTTAGTGCTCCAAACTATTGTTATCGCTGTGGTAATATGGCTGCAATCCTAGAAATAAGTGAAAACATGGAGCAAAATTTCCTTCAGTTTGACCCAGCTCCACGGCAGATTGAGCCTGATACTACAAGGAAGACTCCCGACTACTTCTTGTGATCCGAATACTTGAGCTGACTGTTTGTAGCCCATCAATATCATATCTTGTAGATGTGTC-TT--AAAAAAA-GTTATGTTATTTGAGGATTAGTAGCATCATCATTCTTTTGTTTGGAGTTAACTCTGCTGCTGGCTTTT-ACATATGCCCGTAGATTCGCCAGTGGTTTGAC-AAAAG-CCTCAGTG--TCTTGTCGTGTATACTTTTTT-CCAAAAGAAGCAGCAAT-ACATGATACATTGTGATTTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459007" ref_strand="+" ref_description="SGN-E459007 [cPRO-33-G3]">
      <seq>gtttttatgatgaatgcttgaggaagtatggaaatgctaatgtttggaagtatttcactgatctctttgattttctaccattaacggcactcatagagagtcagatattctgtttgcatggaggactctcaccatcccttgatacactcgataacatccgagcactggaccgtatacaagaggtgccacatgaagggccgatgtgtgatctcctatggtctgatccagacgatcgctgtggttggggaatatcacctcggggggctggttacacatttggacaggatatagcatctcagtttaatcacactaatggtctctcactgatttctagagcccatcagcttgtcatggaaggttttaattggtgtcaggaaaagaatgttgtaacggtatttagtgctccaaactattgttatcgctgtggtaatatggctgcaatcctagaaataagtgaaaacatggagcaaaatttccttcagtttgacccagctccacggcagattgagcctgatactacaaggaagactcccgactacttcttgtgatccgaatacttgagctgactgtttgtagcccatcaatatcatatcttgtagatgtgtcttaaaaaaagttatgttatttgaggattagtagcatcatcattcttttgtttggagttaactctgctgctggcttttaacatatgcccgtagattcgccagtgttttgacaaagccctcagtgtcttgtcgtgtatacttttttccaaaaagaagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="-" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="45539" stop="43467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45239" g_stop="45136" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45135" i_stop="45053" i_length="83">
            <donor d_prob="0.754" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45052" g_stop="44975" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="182" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44974" i_stop="44443" i_length="532">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44442" g_stop="44251" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="374" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44250" i_stop="44116" i_length="135">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44115" g_stop="43717" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="765" r_length="391" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="-" ref_id="SGN-E459007" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45239" e_stop="45136"/>
          <exon e_start="45052" e_stop="44975"/>
          <exon e_start="44442" e_stop="44251"/>
          <exon e_start="44115" e_stop="43717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTATGATGAATGTTTGAGGAAGTATGGAAATGCCAATGTTTGGAAGTATTTCACTGATCTCTTTGATTATCTACCATTGACGGCACTCATAGAGAGTCAGGTTTGAGATCTTACTGAACTGGCAATTCACTTGAACATTATTATTGGCGAGTTTTAACAAGCCTAATTTACTCAAAATTGCAGATATTCTGTTTGCATGGAGGACTCTCACCATCCCTTGATACACTTGATAACATCCGAGCACTGGACCGTATACAAGAGGTATAGAGATAGTTGTGTAATTCAAACTTTACATGTTCATGATATGTTAAATTAATCCGCGTTGTATTTTGTCACCGCCTGCTCTCCCTCCTCTTGCTCTACCCACCACAGCATCTATCAGCTATCAAGTTAATTTCCTATTTACCTAACAAAATTGATCATTAAGGCACAACAGGACTACGTATGTAGGTTACATCCTTTTTATTCAACCTGACTACAGATATAACCAAACAAATCAAGGCTTGAACAGGAAGAAAACTATTTATTTCTGTATGATGAGTTCGAAAGAGTCTCATTTTCTTTTCTAATGTGTTGTAGAATAGGTTTGGCAATGTTCTGTATATGTTACATAGAGGCTTGTAGTTAAGTTTGTTCAACAGTGAATGTGATCCACTTACATAACACTTCCTATCTTTTAGTTGCTCGGACGGCACCTATTTGCTCTAGTCACTTCTATTGTTTCATGATTTTTATATCTTTTTATGGCAATGCTACTGATCCCGGACTATTGCTTCTTTGTTGTGGTTGTTAGGTGCCACATGAAGGGCCGATGTGTGATCTCCTATGGTCTGATCCAGACGATCGCTGTGGTTGGGGAATATCACCTCGGGGGGCTGGTTACACATTTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCTCACTGATTTCTAGAGCCCATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAGGTCTGTAGATATAAACCGAACACTTTCTTCCCTACCTCTAATGGAAAAATTCCACTTTTTGTTCATTTCAGTGGAACTTCTTGTTCCTCAGGTATTAGTTTGTAGTTTTAACATGGTATTGGTTGTTTTTGGCAGGATAAGAATGTTGTAACAGTATTTAGTGCTCCAAACTATTGTTATCGCTGTGGTAATATGGCTGCAATCCTAGAAATAAGTGAAAACATGGAGCAGAATTTCCTTCAGTTTGACCCAGCTCCACGACAGATTGAGCCTGATACTACAAGGAAGACTCCAGACTACTTCTTGTAATCCGAATACTTGAGCTGACTGTTTGTAGCCCATCAGTATCGTATCTTGTAGATGTGTCTTTAAAAAAAAAGGTTATGTTATTTGAGGATTAGTATCATCATCATTGTTTTGTTTGGAGTTTGCTCTGCTGCTGGCTTTTAACATATGCCCGTAGATTCGCCAGAGTTTTGACAAAAAGCCCTTAGTGTCTCTTGTCTCGTATAATTTTTTGCAAAAAGAAGCAGC</genome_strand>
        <mrna_strand>GTTTTTATGATGAATGCTTGAGGAAGTATGGAAATGCTAATGTTTGGAAGTATTTCACTGATCTCTTTGATTTTCTACCATTAACGGCACTCATAGAGAGTCAG...................................................................................ATATTCTGTTTGCATGGAGGACTCTCACCATCCCTTGATACACTCGATAACATCCGAGCACTGGACCGTATACAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCACATGAAGGGCCGATGTGTGATCTCCTATGGTCTGATCCAGACGATCGCTGTGGTTGGGGAATATCACCTCGGGGGGCTGGTTACACATTTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCTCACTGATTTCTAGAGCCCATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAG.......................................................................................................................................GAAAAGAATGTTGTAACGGTATTTAGTGCTCCAAACTATTGTTATCGCTGTGGTAATATGGCTGCAATCCTAGAAATAAGTGAAAACATGGAGCAAAATTTCCTTCAGTTTGACCCAGCTCCACGGCAGATTGAGCCTGATACTACAAGGAAGACTCCCGACTACTTCTTGTGATCCGAATACTTGAGCTGACTGTTTGTAGCCCATCAATATCATATCTTGTAGATGTGTC-TT--AAAAAAA-GTTATGTTATTTGAGGATTAGTAGCATCATCATTCTTTTGTTTGGAGTTAACTCTGCTGCTGGCTTTTAACATATGCCCGTAGATTCGCCAGTGTTTTGAC--AAAGCCCTCAGTG--TCTTGTCGTGTATACTTTTTTCCAAAAAGAAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747489" ref_strand="+" ref_description="SGN-E747489 [GI|34398260]">
      <seq>gaattcggcacgagcatgaatggagacgaatttcagaaacaggagatgattcagagattgaaaccctagtttcttcatcaatgttccaatcgttaatttctgtttgattttaatcttcggcgtgcaaaaactccgattctgttggtcaatttcatagcaattggattttacctcgattcgatctgaggacttttgggtctttttttgctaatcgaagcggtgaggaatatttaggcaggtgattgtagaggataattttgtttgaaaaaatgccgtcgcacgcggatgtagatcggcagatcgagcaattgatggagtgcaagccgttatcggaggcggaggtgaagacgttgtgtgaacaagcaagggcgatactagtggaggaatggaatgtgcaaccggtgaaatgtccggtgacggtgtgcggtgatatccatggacagttttacgatctgattgagctttttcgaatcggcggcaacgtcctgattactaattatctcttcatgggagattatgttgaccgtggatactattctgtcgagactgtctcactattggttgctttgaaggttcgttatagagatagaatcacaattcttaggggaaaccatgaaagccgacagatcactcaagtgtatggtttttatgatgaatgtttgaggaagtatggaaatgccaatgtttggaagtatttcactgatctctttgattatctaccattgacggcactcatagagagtcagatattctgtttgcatggaggactctcaccatcccttgatacacttgataacatccgagcactggaccgtatacaagaggtgccacatgaagggccgatgtgtgatctcctatggtctgatccagacgatcgctgtggttggggaatatcacctcggggggctggttacacatttggacaggatatagcatctcagtttaatcacactaatggtctctcactgatttctagagcccatcagcttgtcatggaaggttttaattggtgtcaggataagaatgttgtaacagtatttagtgctccaaactattgttatcgctgtggtaatatggctgcaatcctagaaataagtgaaaacatggagcagaatttccttcagtttgacccagctccacgacagattgagcctgatactacaaggaagactccagactacttcttgtaatccgaatacttgagctgactgtttgtagcccatcagtatcgtatcttgtagatgtgtctttaaaaaaaaaggttatgttatttgaggattagtatcatcatcattgttttgtttggagtttgctctgctgctggcttttaacatatcccgtagattcgccagagttttgacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="-" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="48814" stop="43465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48529" g_stop="48006" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48005" i_stop="47102" i_length="904">
            <donor d_prob="0.943" d_score="0.94"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47101" g_stop="46987" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="637" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46986" i_stop="45245" i_length="1742">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45244" g_stop="45136" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="746" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45135" i_stop="45053" i_length="83">
            <donor d_prob="0.754" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45052" g_stop="44975" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="824" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44974" i_stop="44443" i_length="532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44442" g_stop="44251" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="1016" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44250" i_stop="44116" i_length="135">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44115" g_stop="43765" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1017" r_stop="1366" r_length="350" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1367" polyA_stop="1380"/>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="-" ref_id="SGN-E747489" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1369</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48529" e_stop="48006"/>
          <exon e_start="47101" e_stop="46987"/>
          <exon e_start="45244" e_stop="45136"/>
          <exon e_start="45052" e_stop="44975"/>
          <exon e_start="44442" e_stop="44251"/>
          <exon e_start="44115" e_stop="43765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAGAGAAGCTTCGCATGAATGGAGACGAATTTCAGAAACAGGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGA-TACTAATTATCTCTTCATGGGAGATTATGTTGGTGAGTTTTGGTGATTAGGTTTCATTTTGTGATAGGAATTTGCATATGATTTGTTGGATTTTTTTATGCATTTAATGATTTGTTGTAGTGACATAGGTGGAATGTGAATGGACATAAATAGGATGTAGAAATGAGTGTTTCTGCTAATGTAAGCAGCACTTGAAGGATAGTAAAGTTTGTGCTTTTGTGTATCAAGTAGATTGTGAAGTGTAAGGATGCTGCAAAGTAGCAGCTTTATGGTGGTTATTTTGTGGTTTGCCGTGATTTCAGTATTGTATTTCTCAAAGTATTCATGATAAGGATGATATGTGGTTTGGCTGTTTGTTCATTTATTGGTAGTGTTACTATGATGTGTCACAAAAATGAAGCTTTATTTTGATCTATTTGTCGTTTATCCTCGAGAATGATGACGCGTGGTTGTGATGTGGATCTCTAATGTGCTTGGTGGTTCGAATATGACAAAGTAACGTCATGGCATTGATATAATGTTTGGAGGCAAATGTGGGAGATGTTTCTCTTCATTTGGTATATTTCTTTCGGTGCCAAACGCAACTCATTTTCATTTGTTATAGTTTAACCGAAAAGGCAGTGTTCTCTCAACTTACATCTGATAAGCATGGGTTTCATAAAATGACTGTCTTTTGTTTAAATGACTGTTTTGATAGTAGTTAGAGGCTTCCTTTTAATTTATTTTTCCCAAATATTTTTGCATCTAAGGTGGATTTTATCATATACATCGATGACAATGTACATTTTATTCACCTTTTACTGTTTCTTTTGATTGTTCCCTATCTTACCTCTTCATGCTTACTTATTTGAATGTTGACTAGTACCTTGGTTTCCTTGTTGGTCAAGTACATTAGCATTCATTGTTTTATCATTAATAATTGCCTAATTAATGCAGACCGTGGATACTATTCTGTCGAGACTGTCTCACTATTGGTTGCTTTGAAGGTTCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCATGAAAGCCGACAGATCACTCAAGTGTGAGTTACTTAATTTTGTTCATATTGAAGTGCGTAAGTGAGGTTGTCTGAAAAGATAATTGGTCTTAGTTAACAGCTGATATTCAGGTGTTCCTTCTTTTCCATTGCTTAAATGATCTGGTTTATGTATGACATTGGATGTTTTATGTTTATGCAATTCTACTTTATCCAAAAAAGAAGAAGAAGATGTTTCTGCAATTTTCTTATGTTTTCCATTTAATCTACTGAACTGTTTAATTTTCCAATTACAAGAATTTAGAACTTAATATGAAATGCTGCCCAAGTATGTAAATGTTTTCCCATTTGGTGCACTCTTTATATTTGGTAATGGTCTACTTTATGCTGTTTGGTGTATGATACTTTTATATGTGTTCCTGTCACAGTGTCACTTGATTTTTACTTGTATAGGATGTTCCTAGATGCCACTTCCTTTAAAATTTATCCAGTTTGTTGGATTTCTCTTATTTTGACTTCCTGCAGTGTTTAGTATCCTCTTTGCTTCTCCTTGGGGTTGGGAAGAGTAGCAATGTAAATTCTACGCTTATATGGCTCAAATATCCTTTCTTGAATGTCTATGCTCTTATCGCACTCAAGCAGTGAGTATAATGGATCGATGTTTCTCTTAAATGTACCCAGTACAACTCTTCTTTCCATTTATCACCCTCTTTCCCGAAATAAAAGAAGATAAAAAAGGAACATGGAGGTCAGGCATAAGAATTCAGGTTATCAACTCCTGGTTTTCAGTAAGAAGTTGAAGAGAGCAAGAAGACAAACGTGTTTCTTGAATTCTATGCAGCAAAAACATGTACTTAGGTAATGTAAATGAGAAGGGAGCAATACTTCTGGAGAACCAATGATGGCCTTCTCATCCCCATGCTATTTGACAAGACATGTTTGTTCATTGCTTTGGTTTTCCAGCTCCTGTGAACCTTGATCACTGATAATGATTAGTTTTTTTTCTTTCTTATTTCTTAGTATTTTGGGGGATTTAACCCTCACCAACAGGTGAAAATTCAGGTAGCCAACCAACTGGACTACTAAAATTCCCAAGGATTAGGTTGATTAAGCTTTTTATAGAAATTGGTCTAGTTGAACTGCTGGGATAATGTAAGAACTATTATAATTGTTCCTGGCGAGTGAGGTTACCATAACAAGCAAAATTGTTTATAAGGGTCTATGCGAAGATCATGTCTGCCTGAAGTCAAGCTCCTATTATTGCCACTGACCACCCCTAGTCTCTGAAGTCATGAAGCTCTTTGAATAGAAAAACTTAGCAATCAAATTCAACAGGAGGATATCGTAACTGAGTAGTTGGACAATGATGCCATATTATACGCTTGAATGTTAAAGTTGCTAAATCTTTTAGGAAGTGTATCTTCCTTCACATGTGTTTTTAGATATCTTTTAACCAAAGGATTTGCATTGTTAACTTGAGTCACACTTGGGCATTACACACCCTCCATTTTTGCGTTGATAATTCTTCAGAGCACAAGGTTCACTTAAGCGACTTTGCTCTTTAACCACTCGATAGATGTTTATGGTTACTTATCAATGAAGGTATCTCTACACAATCCTTCTAGTTTTTTATTTGACAAGTACTTTTTGGGCAGTCTTGTGGGGATTAATCATCTATGCTACTGCTTCTCATGATCAGCTTTTCCCTATTTGTTTTATGCTGAATACAATATGACTGCAGGTTCTAGTCATGTTTGCATTAATTGACAGATACCTTTTCCTGTTAGGTATGGTTTTTATGATGAATGTTTGAGGAAGTATGGAAATGCCAATGTTTGGAAGTATTTCACTGATCTCTTTGATTATCTACCATTGACGGCACTCATAGAGAGTCAGGTTTGAGATCTTACTGAACTGGCAATTCACTTGAACATTATTATTGGCGAGTTTTAACAAGCCTAATTTACTCAAAATTGCAGATATTCTGTTTGCATGGAGGACTCTCACCATCCCTTGATACACTTGATAACATCCGAGCACTGGACCGTATACAAGAGGTATAGAGATAGTTGTGTAATTCAAACTTTACATGTTCATGATATGTTAAATTAATCCGCGTTGTATTTTGTCACCGCCTGCTCTCCCTCCTCTTGCTCTACCCACCACAGCATCTATCAGCTATCAAGTTAATTTCCTATTTACCTAACAAAATTGATCATTAAGGCACAACAGGACTACGTATGTAGGTTACATCCTTTTTATTCAACCTGACTACAGATATAACCAAACAAATCAAGGCTTGAACAGGAAGAAAACTATTTATTTCTGTATGATGAGTTCGAAAGAGTCTCATTTTCTTTTCTAATGTGTTGTAGAATAGGTTTGGCAATGTTCTGTATATGTTACATAGAGGCTTGTAGTTAAGTTTGTTCAACAGTGAATGTGATCCACTTACATAACACTTCCTATCTTTTAGTTGCTCGGACGGCACCTATTTGCTCTAGTCACTTCTATTGTTTCATGATTTTTATATCTTTTTATGGCAATGCTACTGATCCCGGACTATTGCTTCTTTGTTGTGGTTGTTAGGTGCCACATGAAGGGCCGATGTGTGATCTCCTATGGTCTGATCCAGACGATCGCTGTGGTTGGGGAATATCACCTCGGGGGGCTGGTTACACATTTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCTCACTGATTTCTAGAGCCCATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAGGTCTGTAGATATAAACCGAACACTTTCTTCCCTACCTCTAATGGAAAAATTCCACTTTTTGTTCATTTCAGTGGAACTTCTTGTTCCTCAGGTATTAGTTTGTAGTTTTAACATGGTATTGGTTGTTTTTGGCAGGATAAGAATGTTGTAACAGTATTTAGTGCTCCAAACTATTGTTATCGCTGTGGTAATATGGCTGCAATCCTAGAAATAAGTGAAAACATGGAGCAGAATTTCCTTCAGTTTGACCCAGCTCCACGACAGATTGAGCCTGATACTACAAGGAAGACTCCAGACTACTTCTTGTAATCCGAATACTTGAGCTGACTGTTTGTAGCCCATCAGTATCGTATCTTGTAGATGTGTCTTTAAAAAAAAAGGTTATGTTATTTGAGGATTAGTATCATCATCATTGTTTTGTTTGGAGTTTGCTCTGCTGCTGGCTTTTAACATATGCCCGTAGATTCGCCAGAGTTTTGACAAAAA</genome_strand>
        <mrna_strand>GAATTCGGCA-C-GAGCATGAATGGAGACGAATTTCAGAAACAGGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACG-TCCTGATTACTAATTATCTCTTCATGGGAGATTATGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTGGATACTATTCTGTCGAGACTGTCTCACTATTGGTTGCTTTGAAGGTTCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCATGAAAGCCGACAGATCACTCAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGTTTTTATGATGAATGTTTGAGGAAGTATGGAAATGCCAATGTTTGGAAGTATTTCACTGATCTCTTTGATTATCTACCATTGACGGCACTCATAGAGAGTCAG...................................................................................ATATTCTGTTTGCATGGAGGACTCTCACCATCCCTTGATACACTTGATAACATCCGAGCACTGGACCGTATACAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCACATGAAGGGCCGATGTGTGATCTCCTATGGTCTGATCCAGACGATCGCTGTGGTTGGGGAATATCACCTCGGGGGGCTGGTTACACATTTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCTCACTGATTTCTAGAGCCCATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAG.......................................................................................................................................GATAAGAATGTTGTAACAGTATTTAGTGCTCCAAACTATTGTTATCGCTGTGGTAATATGGCTGCAATCCTAGAAATAAGTGAAAACATGGAGCAGAATTTCCTTCAGTTTGACCCAGCTCCACGACAGATTGAGCCTGATACTACAAGGAAGACTCCAGACTACTTCTTGTAATCCGAATACTTGAGCTGACTGTTTGTAGCCCATCAGTATCGTATCTTGTAGATGTGTCTTTAAAAAAAAAGGTTATGTTATTTGAGGATTAGTATCATCATCATTGTTTTGTTTGGAGTTTGCTCTGCTGCTGGCTTTTAACATAT-CCCGTAGATTCGCCAGAGTTTTGACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402137" ref_strand="+" ref_description="SGN-E402137 [PPC-6-F23]">
      <seq>cttgtggaggaatggaatgtgcagccggtgaaatgtccggtcacagtttgtggtgatattcatgggcagttttatgatctgattgagctttttcggattggtggaaatgcgccggatacgaattatctcttcatgggagattatgttgaccgcgggtactattcagtggagactgtctcactcttggttgctctgaaggtccgttatagagatagaatcacaattcttaggggtaaccatgaaagccgacaaatcactcaggtgtatggtttttatgatgaatgcttgaggaagtacggaaatgccaatgtttggaagtatttcactgatctttttgattatctaccactgacagcactaattgagagtcaggtattctgtttacatggaggactctcgccttctttggatacactggataacatacgatcattggaccgtatacaagaggttccacatgaaggaccaatgtgcgatcttctgtggtccgatccagatgatcggtgtggttggggaatttcaccccgaggggctggttacacctttggacaggatatagcatctcagttcaaccacaccaatggactcactctgatttctagagcccatcagcttgtcatggagggttttaattggtgtcaggataagaatgttgtgacagtatttagtgctccaaactattgttatcggtgtggtaacatggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="-" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="48453" stop="43752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48153" g_stop="48006" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48005" i_stop="47102" i_length="904">
            <donor d_prob="0.943" d_score="0.86"/>
            <acceptor a_prob="0.943" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47101" g_stop="46987" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="263" r_length="115" r_score="0.913"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46986" i_stop="45245" i_length="1742">
            <donor d_prob="0.865" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45244" g_stop="45136" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="372" r_length="109" r_score="0.936"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45135" i_stop="45053" i_length="83">
            <donor d_prob="0.754" d_score="0.90"/>
            <acceptor a_prob="0.977" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45052" g_stop="44975" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="450" r_length="78" r_score="0.859"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44974" i_stop="44443" i_length="532">
            <donor d_prob="0.999" d_score="0.84"/>
            <acceptor a_prob="0.999" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44442" g_stop="44251" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="642" r_length="192" r_score="0.896"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44250" i_stop="44116" i_length="135">
            <donor d_prob="0.822" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44115" g_stop="44052" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="706" r_length="64" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="-" ref_id="SGN-E402137" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48153" e_stop="48006"/>
          <exon e_start="47101" e_stop="46987"/>
          <exon e_start="45244" e_stop="45136"/>
          <exon e_start="45052" e_stop="44975"/>
          <exon e_start="44442" e_stop="44251"/>
          <exon e_start="44115" e_stop="44052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTGGTGAGTTTTGGTGATTAGGTTTCATTTTGTGATAGGAATTTGCATATGATTTGTTGGATTTTTTTATGCATTTAATGATTTGTTGTAGTGACATAGGTGGAATGTGAATGGACATAAATAGGATGTAGAAATGAGTGTTTCTGCTAATGTAAGCAGCACTTGAAGGATAGTAAAGTTTGTGCTTTTGTGTATCAAGTAGATTGTGAAGTGTAAGGATGCTGCAAAGTAGCAGCTTTATGGTGGTTATTTTGTGGTTTGCCGTGATTTCAGTATTGTATTTCTCAAAGTATTCATGATAAGGATGATATGTGGTTTGGCTGTTTGTTCATTTATTGGTAGTGTTACTATGATGTGTCACAAAAATGAAGCTTTATTTTGATCTATTTGTCGTTTATCCTCGAGAATGATGACGCGTGGTTGTGATGTGGATCTCTAATGTGCTTGGTGGTTCGAATATGACAAAGTAACGTCATGGCATTGATATAATGTTTGGAGGCAAATGTGGGAGATGTTTCTCTTCATTTGGTATATTTCTTTCGGTGCCAAACGCAACTCATTTTCATTTGTTATAGTTTAACCGAAAAGGCAGTGTTCTCTCAACTTACATCTGATAAGCATGGGTTTCATAAAATGACTGTCTTTTGTTTAAATGACTGTTTTGATAGTAGTTAGAGGCTTCCTTTTAATTTATTTTTCCCAAATATTTTTGCATCTAAGGTGGATTTTATCATATACATCGATGACAATGTACATTTTATTCACCTTTTACTGTTTCTTTTGATTGTTCCCTATCTTACCTCTTCATGCTTACTTATTTGAATGTTGACTAGTACCTTGGTTTCCTTGTTGGTCAAGTACATTAGCATTCATTGTTTTATCATTAATAATTGCCTAATTAATGCAGACCGTGGATACTATTCTGTCGAGACTGTCTCACTATTGGTTGCTTTGAAGGTTCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCATGAAAGCCGACAGATCACTCAAGTGTGAGTTACTTAATTTTGTTCATATTGAAGTGCGTAAGTGAGGTTGTCTGAAAAGATAATTGGTCTTAGTTAACAGCTGATATTCAGGTGTTCCTTCTTTTCCATTGCTTAAATGATCTGGTTTATGTATGACATTGGATGTTTTATGTTTATGCAATTCTACTTTATCCAAAAAAGAAGAAGAAGATGTTTCTGCAATTTTCTTATGTTTTCCATTTAATCTACTGAACTGTTTAATTTTCCAATTACAAGAATTTAGAACTTAATATGAAATGCTGCCCAAGTATGTAAATGTTTTCCCATTTGGTGCACTCTTTATATTTGGTAATGGTCTACTTTATGCTGTTTGGTGTATGATACTTTTATATGTGTTCCTGTCACAGTGTCACTTGATTTTTACTTGTATAGGATGTTCCTAGATGCCACTTCCTTTAAAATTTATCCAGTTTGTTGGATTTCTCTTATTTTGACTTCCTGCAGTGTTTAGTATCCTCTTTGCTTCTCCTTGGGGTTGGGAAGAGTAGCAATGTAAATTCTACGCTTATATGGCTCAAATATCCTTTCTTGAATGTCTATGCTCTTATCGCACTCAAGCAGTGAGTATAATGGATCGATGTTTCTCTTAAATGTACCCAGTACAACTCTTCTTTCCATTTATCACCCTCTTTCCCGAAATAAAAGAAGATAAAAAAGGAACATGGAGGTCAGGCATAAGAATTCAGGTTATCAACTCCTGGTTTTCAGTAAGAAGTTGAAGAGAGCAAGAAGACAAACGTGTTTCTTGAATTCTATGCAGCAAAAACATGTACTTAGGTAATGTAAATGAGAAGGGAGCAATACTTCTGGAGAACCAATGATGGCCTTCTCATCCCCATGCTATTTGACAAGACATGTTTGTTCATTGCTTTGGTTTTCCAGCTCCTGTGAACCTTGATCACTGATAATGATTAGTTTTTTTTCTTTCTTATTTCTTAGTATTTTGGGGGATTTAACCCTCACCAACAGGTGAAAATTCAGGTAGCCAACCAACTGGACTACTAAAATTCCCAAGGATTAGGTTGATTAAGCTTTTTATAGAAATTGGTCTAGTTGAACTGCTGGGATAATGTAAGAACTATTATAATTGTTCCTGGCGAGTGAGGTTACCATAACAAGCAAAATTGTTTATAAGGGTCTATGCGAAGATCATGTCTGCCTGAAGTCAAGCTCCTATTATTGCCACTGACCACCCCTAGTCTCTGAAGTCATGAAGCTCTTTGAATAGAAAAACTTAGCAATCAAATTCAACAGGAGGATATCGTAACTGAGTAGTTGGACAATGATGCCATATTATACGCTTGAATGTTAAAGTTGCTAAATCTTTTAGGAAGTGTATCTTCCTTCACATGTGTTTTTAGATATCTTTTAACCAAAGGATTTGCATTGTTAACTTGAGTCACACTTGGGCATTACACACCCTCCATTTTTGCGTTGATAATTCTTCAGAGCACAAGGTTCACTTAAGCGACTTTGCTCTTTAACCACTCGATAGATGTTTATGGTTACTTATCAATGAAGGTATCTCTACACAATCCTTCTAGTTTTTTATTTGACAAGTACTTTTTGGGCAGTCTTGTGGGGATTAATCATCTATGCTACTGCTTCTCATGATCAGCTTTTCCCTATTTGTTTTATGCTGAATACAATATGACTGCAGGTTCTAGTCATGTTTGCATTAATTGACAGATACCTTTTCCTGTTAGGTATGGTTTTTATGATGAATGTTTGAGGAAGTATGGAAATGCCAATGTTTGGAAGTATTTCACTGATCTCTTTGATTATCTACCATTGACGGCACTCATAGAGAGTCAGGTTTGAGATCTTACTGAACTGGCAATTCACTTGAACATTATTATTGGCGAGTTTTAACAAGCCTAATTTACTCAAAATTGCAGATATTCTGTTTGCATGGAGGACTCTCACCATCCCTTGATACACTTGATAACATCCGAGCACTGGACCGTATACAAGAGGTATAGAGATAGTTGTGTAATTCAAACTTTACATGTTCATGATATGTTAAATTAATCCGCGTTGTATTTTGTCACCGCCTGCTCTCCCTCCTCTTGCTCTACCCACCACAGCATCTATCAGCTATCAAGTTAATTTCCTATTTACCTAACAAAATTGATCATTAAGGCACAACAGGACTACGTATGTAGGTTACATCCTTTTTATTCAACCTGACTACAGATATAACCAAACAAATCAAGGCTTGAACAGGAAGAAAACTATTTATTTCTGTATGATGAGTTCGAAAGAGTCTCATTTTCTTTTCTAATGTGTTGTAGAATAGGTTTGGCAATGTTCTGTATATGTTACATAGAGGCTTGTAGTTAAGTTTGTTCAACAGTGAATGTGATCCACTTACATAACACTTCCTATCTTTTAGTTGCTCGGACGGCACCTATTTGCTCTAGTCACTTCTATTGTTTCATGATTTTTATATCTTTTTATGGCAATGCTACTGATCCCGGACTATTGCTTCTTTGTTGTGGTTGTTAGGTGCCACATGAAGGGCCGATGTGTGATCTCCTATGGTCTGATCCAGACGATCGCTGTGGTTGGGGAATATCACCTCGGGGGGCTGGTTACACATTTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCTCACTGATTTCTAGAGCCCATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAGGTCTGTAGATATAAACCGAACACTTTCTTCCCTACCTCTAATGGAAAAATTCCACTTTTTGTTCATTTCAGTGGAACTTCTTGTTCCTCAGGTATTAGTTTGTAGTTTTAACATGGTATTGGTTGTTTTTGGCAGGATAAGAATGTTGTAACAGTATTTAGTGCTCCAAACTATTGTTATCGCTGTGGTAATATGGCTG</genome_strand>
        <mrna_strand>CTTGTGGAGGAATGGAATGTGCAGCCGGTGAAATGTCCGGTCACAGTTTGTGGTGATATTCATGGGCAGTTTTATGATCTGATTGAGCTTTTTCGGATTGGTGGAAATGCGCCGGATACGAATTATCTCTTCATGGGAGATTATGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCGGGTACTATTCAGTGGAGACTGTCTCACTCTTGGTTGCTCTGAAGGTCCGTTATAGAGATAGAATCACAATTCTTAGGGGTAACCATGAAAGCCGACAAATCACTCAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGTTTTTATGATGAATGCTTGAGGAAGTACGGAAATGCCAATGTTTGGAAGTATTTCACTGATCTTTTTGATTATCTACCACTGACAGCACTAATTGAGAGTCAG...................................................................................GTATTCTGTTTACATGGAGGACTCTCGCCTTCTTTGGATACACTGGATAACATACGATCATTGGACCGTATACAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCACATGAAGGACCAATGTGCGATCTTCTGTGGTCCGATCCAGATGATCGGTGTGGTTGGGGAATTTCACCCCGAGGGGCTGGTTACACCTTTGGACAGGATATAGCATCTCAGTTCAACCACACCAATGGACTCACTCTGATTTCTAGAGCCCATCAGCTTGTCATGGAGGGTTTTAATTGGTGTCAG.......................................................................................................................................GATAAGAATGTTGTGACAGTATTTAGTGCTCCAAACTATTGTTATCGGTGTGGTAACATGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700407" ref_strand="+" ref_description="SGN-E700407 [FA13AB08]">
      <seq>gacgaatttcagaaacaggagatgattcagagattgaaaccctagtttcttcatcaatgttccaatcgttaatttctgtttgattttaatcttcggcgtgcaaaaactccgattctgttggtcaatttcatagcaattggattttacctcgattcgatctgaggacttttgggtctttttttgctaatcgaagcggtgaggaatatttaggcaggtgattgtagaggataattttgtttgaaaaaatgccgtcgcacgcggatgtagatcggcagatcgagcaattgatggagtgcaagccgttatcggaggcggaggtgaagacgttgtgtgaacaagcaagggcgatactagtggaggaatggaatgtgcaaccggtgaaatgtccggtgacggtgtgcggtgatatccatggacagttttacgatctgattgagctttttcgaatcggcggcaacgctcctgatactaattatctcttcatgggagattatgttgaccgtggatactattctgtcgagactgtctcactattggttgctttgaaggttcgttatagagatagaatcacaattcttaggggaaaccatgaaagccgacagatcactcaagtgtatggtttttatgatgaatgtttgaggaagtatggaaatgccaatgtttggaagtatttcactgatctctttgattatctaccattgacggcactcatagagagtcagatattctgtttgcatggaggactctcaccatcccttgatacacttgataacatccgagcactggaccgtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="-" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="48803" stop="44681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48503" g_stop="48006" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48005" i_stop="47102" i_length="904">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47101" g_stop="46987" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="613" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46986" i_stop="45245" i_length="1742">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45244" g_stop="45136" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="722" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45135" i_stop="45053" i_length="83">
            <donor d_prob="0.754" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45052" g_stop="44981" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="794" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="-" ref_id="SGN-E700407" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48503" e_stop="48006"/>
          <exon e_start="47101" e_stop="46987"/>
          <exon e_start="45244" e_stop="45136"/>
          <exon e_start="45052" e_stop="44981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGAATTTCAGAAACAGGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTGGTGAGTTTTGGTGATTAGGTTTCATTTTGTGATAGGAATTTGCATATGATTTGTTGGATTTTTTTATGCATTTAATGATTTGTTGTAGTGACATAGGTGGAATGTGAATGGACATAAATAGGATGTAGAAATGAGTGTTTCTGCTAATGTAAGCAGCACTTGAAGGATAGTAAAGTTTGTGCTTTTGTGTATCAAGTAGATTGTGAAGTGTAAGGATGCTGCAAAGTAGCAGCTTTATGGTGGTTATTTTGTGGTTTGCCGTGATTTCAGTATTGTATTTCTCAAAGTATTCATGATAAGGATGATATGTGGTTTGGCTGTTTGTTCATTTATTGGTAGTGTTACTATGATGTGTCACAAAAATGAAGCTTTATTTTGATCTATTTGTCGTTTATCCTCGAGAATGATGACGCGTGGTTGTGATGTGGATCTCTAATGTGCTTGGTGGTTCGAATATGACAAAGTAACGTCATGGCATTGATATAATGTTTGGAGGCAAATGTGGGAGATGTTTCTCTTCATTTGGTATATTTCTTTCGGTGCCAAACGCAACTCATTTTCATTTGTTATAGTTTAACCGAAAAGGCAGTGTTCTCTCAACTTACATCTGATAAGCATGGGTTTCATAAAATGACTGTCTTTTGTTTAAATGACTGTTTTGATAGTAGTTAGAGGCTTCCTTTTAATTTATTTTTCCCAAATATTTTTGCATCTAAGGTGGATTTTATCATATACATCGATGACAATGTACATTTTATTCACCTTTTACTGTTTCTTTTGATTGTTCCCTATCTTACCTCTTCATGCTTACTTATTTGAATGTTGACTAGTACCTTGGTTTCCTTGTTGGTCAAGTACATTAGCATTCATTGTTTTATCATTAATAATTGCCTAATTAATGCAGACCGTGGATACTATTCTGTCGAGACTGTCTCACTATTGGTTGCTTTGAAGGTTCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCATGAAAGCCGACAGATCACTCAAGTGTGAGTTACTTAATTTTGTTCATATTGAAGTGCGTAAGTGAGGTTGTCTGAAAAGATAATTGGTCTTAGTTAACAGCTGATATTCAGGTGTTCCTTCTTTTCCATTGCTTAAATGATCTGGTTTATGTATGACATTGGATGTTTTATGTTTATGCAATTCTACTTTATCCAAAAAAGAAGAAGAAGATGTTTCTGCAATTTTCTTATGTTTTCCATTTAATCTACTGAACTGTTTAATTTTCCAATTACAAGAATTTAGAACTTAATATGAAATGCTGCCCAAGTATGTAAATGTTTTCCCATTTGGTGCACTCTTTATATTTGGTAATGGTCTACTTTATGCTGTTTGGTGTATGATACTTTTATATGTGTTCCTGTCACAGTGTCACTTGATTTTTACTTGTATAGGATGTTCCTAGATGCCACTTCCTTTAAAATTTATCCAGTTTGTTGGATTTCTCTTATTTTGACTTCCTGCAGTGTTTAGTATCCTCTTTGCTTCTCCTTGGGGTTGGGAAGAGTAGCAATGTAAATTCTACGCTTATATGGCTCAAATATCCTTTCTTGAATGTCTATGCTCTTATCGCACTCAAGCAGTGAGTATAATGGATCGATGTTTCTCTTAAATGTACCCAGTACAACTCTTCTTTCCATTTATCACCCTCTTTCCCGAAATAAAAGAAGATAAAAAAGGAACATGGAGGTCAGGCATAAGAATTCAGGTTATCAACTCCTGGTTTTCAGTAAGAAGTTGAAGAGAGCAAGAAGACAAACGTGTTTCTTGAATTCTATGCAGCAAAAACATGTACTTAGGTAATGTAAATGAGAAGGGAGCAATACTTCTGGAGAACCAATGATGGCCTTCTCATCCCCATGCTATTTGACAAGACATGTTTGTTCATTGCTTTGGTTTTCCAGCTCCTGTGAACCTTGATCACTGATAATGATTAGTTTTTTTTCTTTCTTATTTCTTAGTATTTTGGGGGATTTAACCCTCACCAACAGGTGAAAATTCAGGTAGCCAACCAACTGGACTACTAAAATTCCCAAGGATTAGGTTGATTAAGCTTTTTATAGAAATTGGTCTAGTTGAACTGCTGGGATAATGTAAGAACTATTATAATTGTTCCTGGCGAGTGAGGTTACCATAACAAGCAAAATTGTTTATAAGGGTCTATGCGAAGATCATGTCTGCCTGAAGTCAAGCTCCTATTATTGCCACTGACCACCCCTAGTCTCTGAAGTCATGAAGCTCTTTGAATAGAAAAACTTAGCAATCAAATTCAACAGGAGGATATCGTAACTGAGTAGTTGGACAATGATGCCATATTATACGCTTGAATGTTAAAGTTGCTAAATCTTTTAGGAAGTGTATCTTCCTTCACATGTGTTTTTAGATATCTTTTAACCAAAGGATTTGCATTGTTAACTTGAGTCACACTTGGGCATTACACACCCTCCATTTTTGCGTTGATAATTCTTCAGAGCACAAGGTTCACTTAAGCGACTTTGCTCTTTAACCACTCGATAGATGTTTATGGTTACTTATCAATGAAGGTATCTCTACACAATCCTTCTAGTTTTTTATTTGACAAGTACTTTTTGGGCAGTCTTGTGGGGATTAATCATCTATGCTACTGCTTCTCATGATCAGCTTTTCCCTATTTGTTTTATGCTGAATACAATATGACTGCAGGTTCTAGTCATGTTTGCATTAATTGACAGATACCTTTTCCTGTTAGGTATGGTTTTTATGATGAATGTTTGAGGAAGTATGGAAATGCCAATGTTTGGAAGTATTTCACTGATCTCTTTGATTATCTACCATTGACGGCACTCATAGAGAGTCAGGTTTGAGATCTTACTGAACTGGCAATTCACTTGAACATTATTATTGGCGAGTTTTAACAAGCCTAATTTACTCAAAATTGCAGATATTCTGTTTGCATGGAGGACTCTCACCATCCCTTGATACACTTGATAACATCCGAGCACTGGACCGTATA</genome_strand>
        <mrna_strand>GACGAATTTCAGAAACAGGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTGGATACTATTCTGTCGAGACTGTCTCACTATTGGTTGCTTTGAAGGTTCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCATGAAAGCCGACAGATCACTCAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGTTTTTATGATGAATGTTTGAGGAAGTATGGAAATGCCAATGTTTGGAAGTATTTCACTGATCTCTTTGATTATCTACCATTGACGGCACTCATAGAGAGTCAG...................................................................................ATATTCTGTTTGCATGGAGGACTCTCACCATCCCTTGATACACTTGATAACATCCGAGCACTGGACCGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570677" ref_strand="+" ref_description="SGN-E570677 [15298]">
      <seq>attcgatctgaggacttttgatattttttgctaatcgaagcggtgaggaatatttagataggtgatagtagaggataattttgtttgaaaaaatgccgtcgcacgcggatgtagatcggcagatcgagcaattgatggagtgcaagccgttatcggaggcggaggtgaagacgttgtgtgaacaagcaagggcgatactagtggaggaatggaatgtgcaaccggtgaaatgtccggtgacggtgtgcggtgatatccacggacagttttacgatctgattgagctttttcgaatcggcggcaacgctcctgatactaattatctcttcatgggagattatgttgaccgtggatactattctgtcgagactgtctcactattggttgctttgaaggtccgttatagagatagaatcaccattcttaggggaaaccacgaaagccgacagatcactcaagtgaatggtttttatgatgaatgcttgaggaagtacggaaattctaatgtttggaggtatttcaccggatctctttgattatctaccattgacggcactcatagagagtcagatattctgtttgcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="-" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="48652" stop="44818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48352" g_stop="48006" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48005" i_stop="47102" i_length="904">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47101" g_stop="46987" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="460" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46986" i_stop="45245" i_length="1742">
            <donor d_prob="0.865" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45244" g_stop="45136" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="570" r_length="110" r_score="0.917"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45135" i_stop="45053" i_length="83">
            <donor d_prob="0.754" d_score="0.94"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45052" g_stop="45035" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="588" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="-" ref_id="SGN-E570677" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48352" e_stop="48006"/>
          <exon e_start="47101" e_stop="46987"/>
          <exon e_start="45244" e_stop="45136"/>
          <exon e_start="45052" e_stop="45035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTGGTGAGTTTTGGTGATTAGGTTTCATTTTGTGATAGGAATTTGCATATGATTTGTTGGATTTTTTTATGCATTTAATGATTTGTTGTAGTGACATAGGTGGAATGTGAATGGACATAAATAGGATGTAGAAATGAGTGTTTCTGCTAATGTAAGCAGCACTTGAAGGATAGTAAAGTTTGTGCTTTTGTGTATCAAGTAGATTGTGAAGTGTAAGGATGCTGCAAAGTAGCAGCTTTATGGTGGTTATTTTGTGGTTTGCCGTGATTTCAGTATTGTATTTCTCAAAGTATTCATGATAAGGATGATATGTGGTTTGGCTGTTTGTTCATTTATTGGTAGTGTTACTATGATGTGTCACAAAAATGAAGCTTTATTTTGATCTATTTGTCGTTTATCCTCGAGAATGATGACGCGTGGTTGTGATGTGGATCTCTAATGTGCTTGGTGGTTCGAATATGACAAAGTAACGTCATGGCATTGATATAATGTTTGGAGGCAAATGTGGGAGATGTTTCTCTTCATTTGGTATATTTCTTTCGGTGCCAAACGCAACTCATTTTCATTTGTTATAGTTTAACCGAAAAGGCAGTGTTCTCTCAACTTACATCTGATAAGCATGGGTTTCATAAAATGACTGTCTTTTGTTTAAATGACTGTTTTGATAGTAGTTAGAGGCTTCCTTTTAATTTATTTTTCCCAAATATTTTTGCATCTAAGGTGGATTTTATCATATACATCGATGACAATGTACATTTTATTCACCTTTTACTGTTTCTTTTGATTGTTCCCTATCTTACCTCTTCATGCTTACTTATTTGAATGTTGACTAGTACCTTGGTTTCCTTGTTGGTCAAGTACATTAGCATTCATTGTTTTATCATTAATAATTGCCTAATTAATGCAGACCGTGGATACTATTCTGTCGAGACTGTCTCACTATTGGTTGCTTTGAAGGTTCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCATGAAAGCCGACAGATCACTCAAGTGTGAGTTACTTAATTTTGTTCATATTGAAGTGCGTAAGTGAGGTTGTCTGAAAAGATAATTGGTCTTAGTTAACAGCTGATATTCAGGTGTTCCTTCTTTTCCATTGCTTAAATGATCTGGTTTATGTATGACATTGGATGTTTTATGTTTATGCAATTCTACTTTATCCAAAAAAGAAGAAGAAGATGTTTCTGCAATTTTCTTATGTTTTCCATTTAATCTACTGAACTGTTTAATTTTCCAATTACAAGAATTTAGAACTTAATATGAAATGCTGCCCAAGTATGTAAATGTTTTCCCATTTGGTGCACTCTTTATATTTGGTAATGGTCTACTTTATGCTGTTTGGTGTATGATACTTTTATATGTGTTCCTGTCACAGTGTCACTTGATTTTTACTTGTATAGGATGTTCCTAGATGCCACTTCCTTTAAAATTTATCCAGTTTGTTGGATTTCTCTTATTTTGACTTCCTGCAGTGTTTAGTATCCTCTTTGCTTCTCCTTGGGGTTGGGAAGAGTAGCAATGTAAATTCTACGCTTATATGGCTCAAATATCCTTTCTTGAATGTCTATGCTCTTATCGCACTCAAGCAGTGAGTATAATGGATCGATGTTTCTCTTAAATGTACCCAGTACAACTCTTCTTTCCATTTATCACCCTCTTTCCCGAAATAAAAGAAGATAAAAAAGGAACATGGAGGTCAGGCATAAGAATTCAGGTTATCAACTCCTGGTTTTCAGTAAGAAGTTGAAGAGAGCAAGAAGACAAACGTGTTTCTTGAATTCTATGCAGCAAAAACATGTACTTAGGTAATGTAAATGAGAAGGGAGCAATACTTCTGGAGAACCAATGATGGCCTTCTCATCCCCATGCTATTTGACAAGACATGTTTGTTCATTGCTTTGGTTTTCCAGCTCCTGTGAACCTTGATCACTGATAATGATTAGTTTTTTTTCTTTCTTATTTCTTAGTATTTTGGGGGATTTAACCCTCACCAACAGGTGAAAATTCAGGTAGCCAACCAACTGGACTACTAAAATTCCCAAGGATTAGGTTGATTAAGCTTTTTATAGAAATTGGTCTAGTTGAACTGCTGGGATAATGTAAGAACTATTATAATTGTTCCTGGCGAGTGAGGTTACCATAACAAGCAAAATTGTTTATAAGGGTCTATGCGAAGATCATGTCTGCCTGAAGTCAAGCTCCTATTATTGCCACTGACCACCCCTAGTCTCTGAAGTCATGAAGCTCTTTGAATAGAAAAACTTAGCAATCAAATTCAACAGGAGGATATCGTAACTGAGTAGTTGGACAATGATGCCATATTATACGCTTGAATGTTAAAGTTGCTAAATCTTTTAGGAAGTGTATCTTCCTTCACATGTGTTTTTAGATATCTTTTAACCAAAGGATTTGCATTGTTAACTTGAGTCACACTTGGGCATTACACACCCTCCATTTTTGCGTTGATAATTCTTCAGAGCACAAGGTTCACTTAAGCGACTTTGCTCTTTAACCACTCGATAGATGTTTATGGTTACTTATCAATGAAGGTATCTCTACACAATCCTTCTAGTTTTTTATTTGACAAGTACTTTTTGGGCAGTCTTGTGGGGATTAATCATCTATGCTACTGCTTCTCATGATCAGCTTTTCCCTATTTGTTTTATGCTGAATACAATATGACTGCAGGTTCTAGTCATGTTTGCATTAATTGACAGATACCTTTTCCTGTTAGGTATGGTTTTTATGATGAATGTTTGAGGAAGTATGGAAATGCCAATGTTTGGAAGTATTTCA-CTGATCTCTTTGATTATCTACCATTGACGGCACTCATAGAGAGTCAGGTTTGAGATCTTACTGAACTGGCAATTCACTTGAACATTATTATTGGCGAGTTTTAACAAGCCTAATTTACTCAAAATTGCAGATATTCTGTTTGCATGGA</genome_strand>
        <mrna_strand>ATTCGATCTGAGGACTTTT-GATATTTT-TTGCTAATCGAAGCGGTGAGGAATATTTAGATAGGTGATAGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCACGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTGGATACTATTCTGTCGAGACTGTCTCACTATTGGTTGCTTTGAAGGTCCGTTATAGAGATAGAATCACCATTCTTAGGGGAAACCACGAAAGCCGACAGATCACTCAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGTTTTTATGATGAATGCTTGAGGAAGTACGGAAATTCTAATGTTTGGAGGTATTTCACCGGATCTCTTTGATTATCTACCATTGACGGCACTCATAGAGAGTCAG...................................................................................ATATTCTGTTTGCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259771" ref_strand="+" ref_description="SGN-E259771 [cLEG-51-C5]">
      <seq>ttttttcatcaatgttccaatcgttaatttctgtttgattttaatcttcggcgtgcaaaaactccgattctgttggtcaatttcatagcaattggattttacctcgattcgatctgaggacttttgggtctttttttgctaatcgaagcggtgaggaatatttaggcaggtgattgtagaggataattttgtttgaaaaaatgccgtcgcacgcggatgtagatcggcagatcgagcaattgatggagtgcaagccgttatcggaggcggaggtgaagacgttgtgtgaacaagcaagggcgatactagtggaggaatggaatgtgcaaccggtgaaatgtccggtgacggtgtgcggtgatatccatggacagttttacgatctgattgagctttttcgaatcggcggcaacgctcctgatactaattatctcttcatgggagattatgttgaccgtggatactattctgtcgagactgtctcactattggttgctttgaaggttcgttatagagatagaatcacaattcttaggggaaaccatgaaagccgacagatcactcaagtgtatggtttttatgatgaatgtttgaggaagtatggaaatgccaatgtttgggagtatttcactgatctctttgattatctaccattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="-" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="48758" stop="44856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48458" g_stop="48006" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48005" i_stop="47102" i_length="904">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47101" g_stop="46987" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="568" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46986" i_stop="45245" i_length="1742">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45244" g_stop="45156" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="657" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="-" ref_id="SGN-E259771" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48458" e_stop="48006"/>
          <exon e_start="47101" e_stop="46987"/>
          <exon e_start="45244" e_stop="45156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTGGTGAGTTTTGGTGATTAGGTTTCATTTTGTGATAGGAATTTGCATATGATTTGTTGGATTTTTTTATGCATTTAATGATTTGTTGTAGTGACATAGGTGGAATGTGAATGGACATAAATAGGATGTAGAAATGAGTGTTTCTGCTAATGTAAGCAGCACTTGAAGGATAGTAAAGTTTGTGCTTTTGTGTATCAAGTAGATTGTGAAGTGTAAGGATGCTGCAAAGTAGCAGCTTTATGGTGGTTATTTTGTGGTTTGCCGTGATTTCAGTATTGTATTTCTCAAAGTATTCATGATAAGGATGATATGTGGTTTGGCTGTTTGTTCATTTATTGGTAGTGTTACTATGATGTGTCACAAAAATGAAGCTTTATTTTGATCTATTTGTCGTTTATCCTCGAGAATGATGACGCGTGGTTGTGATGTGGATCTCTAATGTGCTTGGTGGTTCGAATATGACAAAGTAACGTCATGGCATTGATATAATGTTTGGAGGCAAATGTGGGAGATGTTTCTCTTCATTTGGTATATTTCTTTCGGTGCCAAACGCAACTCATTTTCATTTGTTATAGTTTAACCGAAAAGGCAGTGTTCTCTCAACTTACATCTGATAAGCATGGGTTTCATAAAATGACTGTCTTTTGTTTAAATGACTGTTTTGATAGTAGTTAGAGGCTTCCTTTTAATTTATTTTTCCCAAATATTTTTGCATCTAAGGTGGATTTTATCATATACATCGATGACAATGTACATTTTATTCACCTTTTACTGTTTCTTTTGATTGTTCCCTATCTTACCTCTTCATGCTTACTTATTTGAATGTTGACTAGTACCTTGGTTTCCTTGTTGGTCAAGTACATTAGCATTCATTGTTTTATCATTAATAATTGCCTAATTAATGCAGACCGTGGATACTATTCTGTCGAGACTGTCTCACTATTGGTTGCTTTGAAGGTTCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCATGAAAGCCGACAGATCACTCAAGTGTGAGTTACTTAATTTTGTTCATATTGAAGTGCGTAAGTGAGGTTGTCTGAAAAGATAATTGGTCTTAGTTAACAGCTGATATTCAGGTGTTCCTTCTTTTCCATTGCTTAAATGATCTGGTTTATGTATGACATTGGATGTTTTATGTTTATGCAATTCTACTTTATCCAAAAAAGAAGAAGAAGATGTTTCTGCAATTTTCTTATGTTTTCCATTTAATCTACTGAACTGTTTAATTTTCCAATTACAAGAATTTAGAACTTAATATGAAATGCTGCCCAAGTATGTAAATGTTTTCCCATTTGGTGCACTCTTTATATTTGGTAATGGTCTACTTTATGCTGTTTGGTGTATGATACTTTTATATGTGTTCCTGTCACAGTGTCACTTGATTTTTACTTGTATAGGATGTTCCTAGATGCCACTTCCTTTAAAATTTATCCAGTTTGTTGGATTTCTCTTATTTTGACTTCCTGCAGTGTTTAGTATCCTCTTTGCTTCTCCTTGGGGTTGGGAAGAGTAGCAATGTAAATTCTACGCTTATATGGCTCAAATATCCTTTCTTGAATGTCTATGCTCTTATCGCACTCAAGCAGTGAGTATAATGGATCGATGTTTCTCTTAAATGTACCCAGTACAACTCTTCTTTCCATTTATCACCCTCTTTCCCGAAATAAAAGAAGATAAAAAAGGAACATGGAGGTCAGGCATAAGAATTCAGGTTATCAACTCCTGGTTTTCAGTAAGAAGTTGAAGAGAGCAAGAAGACAAACGTGTTTCTTGAATTCTATGCAGCAAAAACATGTACTTAGGTAATGTAAATGAGAAGGGAGCAATACTTCTGGAGAACCAATGATGGCCTTCTCATCCCCATGCTATTTGACAAGACATGTTTGTTCATTGCTTTGGTTTTCCAGCTCCTGTGAACCTTGATCACTGATAATGATTAGTTTTTTTTCTTTCTTATTTCTTAGTATTTTGGGGGATTTAACCCTCACCAACAGGTGAAAATTCAGGTAGCCAACCAACTGGACTACTAAAATTCCCAAGGATTAGGTTGATTAAGCTTTTTATAGAAATTGGTCTAGTTGAACTGCTGGGATAATGTAAGAACTATTATAATTGTTCCTGGCGAGTGAGGTTACCATAACAAGCAAAATTGTTTATAAGGGTCTATGCGAAGATCATGTCTGCCTGAAGTCAAGCTCCTATTATTGCCACTGACCACCCCTAGTCTCTGAAGTCATGAAGCTCTTTGAATAGAAAAACTTAGCAATCAAATTCAACAGGAGGATATCGTAACTGAGTAGTTGGACAATGATGCCATATTATACGCTTGAATGTTAAAGTTGCTAAATCTTTTAGGAAGTGTATCTTCCTTCACATGTGTTTTTAGATATCTTTTAACCAAAGGATTTGCATTGTTAACTTGAGTCACACTTGGGCATTACACACCCTCCATTTTTGCGTTGATAATTCTTCAGAGCACAAGGTTCACTTAAGCGACTTTGCTCTTTAACCACTCGATAGATGTTTATGGTTACTTATCAATGAAGGTATCTCTACACAATCCTTCTAGTTTTTTATTTGACAAGTACTTTTTGGGCAGTCTTGTGGGGATTAATCATCTATGCTACTGCTTCTCATGATCAGCTTTTCCCTATTTGTTTTATGCTGAATACAATATGACTGCAGGTTCTAGTCATGTTTGCATTAATTGACAGATACCTTTTCCTGTTAGGTATGGTTTTTATGATGAATGTTTGAGGAAGTATGGAAATGCCAATGTTTGGAAGTATTTCACTGATCTCTTTGATTATCTACCATTGA</genome_strand>
        <mrna_strand>TTTTTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTGGATACTATTCTGTCGAGACTGTCTCACTATTGGTTGCTTTGAAGGTTCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCATGAAAGCCGACAGATCACTCAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGTTTTTATGATGAATGTTTGAGGAAGTATGGAAATGCCAATGTTTGGGAGTATTTCACTGATCTCTTTGATTATCTACCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305590" ref_strand="+" ref_description="SGN-E305590 [cLEX-14-G12]">
      <seq>agaagcttctcatgaatggagacgaatttcagaaacaggagatgattcagagattgaaaccctagtttcttcatcaatgttccaatcgttaatttctgtttgattttaatcttcggcgtgcaaaaactccgattctgttggtcaatttcatagcaattggattttacctcgattcgatctgaggacttttgggtctttttttgctaatcgaagcggtgaggaatatttaggcaggtgattgtagaggataattttgtttgaaaaaatgccgtcgcacgcggatgtagatcggcagatcgagcaattgatggagtgcaagccgttatcggaggcggaggtgaagacgttgtgtgaacaagcaagggcgatactagtggaggaatggaatgtgcaaccggtgaaatgtccggtgacggtgtgcggtgatatccatggacagttttacgatctgattgagctttttcgaatcggcggcaacgctcctgatactaattatctcttcatgggagattatgttgaccgtggatactattctgtcgagactgtctcactattggttgctttgaaggttcgttatacagatagaatcacaattcttaggggaaaccatgaaagccgacagatcactcaagtgtatggtttttatgatgaatgtttgaagaagtatggaaatgccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="-" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="48823" stop="44898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48523" g_stop="48006" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48005" i_stop="47102" i_length="904">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47101" g_stop="46987" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="633" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46986" i_stop="45245" i_length="1742">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45244" g_stop="45198" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="680" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="-" ref_id="SGN-E305590" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48523" e_stop="48006"/>
          <exon e_start="47101" e_stop="46987"/>
          <exon e_start="45244" e_stop="45198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTTCGCATGAATGGAGACGAATTTCAGAAACAGGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTGGTGAGTTTTGGTGATTAGGTTTCATTTTGTGATAGGAATTTGCATATGATTTGTTGGATTTTTTTATGCATTTAATGATTTGTTGTAGTGACATAGGTGGAATGTGAATGGACATAAATAGGATGTAGAAATGAGTGTTTCTGCTAATGTAAGCAGCACTTGAAGGATAGTAAAGTTTGTGCTTTTGTGTATCAAGTAGATTGTGAAGTGTAAGGATGCTGCAAAGTAGCAGCTTTATGGTGGTTATTTTGTGGTTTGCCGTGATTTCAGTATTGTATTTCTCAAAGTATTCATGATAAGGATGATATGTGGTTTGGCTGTTTGTTCATTTATTGGTAGTGTTACTATGATGTGTCACAAAAATGAAGCTTTATTTTGATCTATTTGTCGTTTATCCTCGAGAATGATGACGCGTGGTTGTGATGTGGATCTCTAATGTGCTTGGTGGTTCGAATATGACAAAGTAACGTCATGGCATTGATATAATGTTTGGAGGCAAATGTGGGAGATGTTTCTCTTCATTTGGTATATTTCTTTCGGTGCCAAACGCAACTCATTTTCATTTGTTATAGTTTAACCGAAAAGGCAGTGTTCTCTCAACTTACATCTGATAAGCATGGGTTTCATAAAATGACTGTCTTTTGTTTAAATGACTGTTTTGATAGTAGTTAGAGGCTTCCTTTTAATTTATTTTTCCCAAATATTTTTGCATCTAAGGTGGATTTTATCATATACATCGATGACAATGTACATTTTATTCACCTTTTACTGTTTCTTTTGATTGTTCCCTATCTTACCTCTTCATGCTTACTTATTTGAATGTTGACTAGTACCTTGGTTTCCTTGTTGGTCAAGTACATTAGCATTCATTGTTTTATCATTAATAATTGCCTAATTAATGCAGACCGTGGATACTATTCTGTCGAGACTGTCTCACTATTGGTTGCTTTGAAGGTTCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCATGAAAGCCGACAGATCACTCAAGTGTGAGTTACTTAATTTTGTTCATATTGAAGTGCGTAAGTGAGGTTGTCTGAAAAGATAATTGGTCTTAGTTAACAGCTGATATTCAGGTGTTCCTTCTTTTCCATTGCTTAAATGATCTGGTTTATGTATGACATTGGATGTTTTATGTTTATGCAATTCTACTTTATCCAAAAAAGAAGAAGAAGATGTTTCTGCAATTTTCTTATGTTTTCCATTTAATCTACTGAACTGTTTAATTTTCCAATTACAAGAATTTAGAACTTAATATGAAATGCTGCCCAAGTATGTAAATGTTTTCCCATTTGGTGCACTCTTTATATTTGGTAATGGTCTACTTTATGCTGTTTGGTGTATGATACTTTTATATGTGTTCCTGTCACAGTGTCACTTGATTTTTACTTGTATAGGATGTTCCTAGATGCCACTTCCTTTAAAATTTATCCAGTTTGTTGGATTTCTCTTATTTTGACTTCCTGCAGTGTTTAGTATCCTCTTTGCTTCTCCTTGGGGTTGGGAAGAGTAGCAATGTAAATTCTACGCTTATATGGCTCAAATATCCTTTCTTGAATGTCTATGCTCTTATCGCACTCAAGCAGTGAGTATAATGGATCGATGTTTCTCTTAAATGTACCCAGTACAACTCTTCTTTCCATTTATCACCCTCTTTCCCGAAATAAAAGAAGATAAAAAAGGAACATGGAGGTCAGGCATAAGAATTCAGGTTATCAACTCCTGGTTTTCAGTAAGAAGTTGAAGAGAGCAAGAAGACAAACGTGTTTCTTGAATTCTATGCAGCAAAAACATGTACTTAGGTAATGTAAATGAGAAGGGAGCAATACTTCTGGAGAACCAATGATGGCCTTCTCATCCCCATGCTATTTGACAAGACATGTTTGTTCATTGCTTTGGTTTTCCAGCTCCTGTGAACCTTGATCACTGATAATGATTAGTTTTTTTTCTTTCTTATTTCTTAGTATTTTGGGGGATTTAACCCTCACCAACAGGTGAAAATTCAGGTAGCCAACCAACTGGACTACTAAAATTCCCAAGGATTAGGTTGATTAAGCTTTTTATAGAAATTGGTCTAGTTGAACTGCTGGGATAATGTAAGAACTATTATAATTGTTCCTGGCGAGTGAGGTTACCATAACAAGCAAAATTGTTTATAAGGGTCTATGCGAAGATCATGTCTGCCTGAAGTCAAGCTCCTATTATTGCCACTGACCACCCCTAGTCTCTGAAGTCATGAAGCTCTTTGAATAGAAAAACTTAGCAATCAAATTCAACAGGAGGATATCGTAACTGAGTAGTTGGACAATGATGCCATATTATACGCTTGAATGTTAAAGTTGCTAAATCTTTTAGGAAGTGTATCTTCCTTCACATGTGTTTTTAGATATCTTTTAACCAAAGGATTTGCATTGTTAACTTGAGTCACACTTGGGCATTACACACCCTCCATTTTTGCGTTGATAATTCTTCAGAGCACAAGGTTCACTTAAGCGACTTTGCTCTTTAACCACTCGATAGATGTTTATGGTTACTTATCAATGAAGGTATCTCTACACAATCCTTCTAGTTTTTTATTTGACAAGTACTTTTTGGGCAGTCTTGTGGGGATTAATCATCTATGCTACTGCTTCTCATGATCAGCTTTTCCCTATTTGTTTTATGCTGAATACAATATGACTGCAGGTTCTAGTCATGTTTGCATTAATTGACAGATACCTTTTCCTGTTAGGTATGGTTTTTATGATGAATGTTTGAGGAAGTATGGAAATGCCAATG</genome_strand>
        <mrna_strand>AGAAGCTTCTCATGAATGGAGACGAATTTCAGAAACAGGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTGGATACTATTCTGTCGAGACTGTCTCACTATTGGTTGCTTTGAAGGTTCGTTATACAGATAGAATCACAATTCTTAGGGGAAACCATGAAAGCCGACAGATCACTCAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGTTTTTATGATGAATGTTTGAAGAAGTATGGAAATGCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314869" ref_strand="+" ref_description="SGN-E314869 [cTOA-31-E1]">
      <seq>acaaacgtgtttcttgaattctatgcagcaaaaacatgtacttaggtaatgtaaatgagaagggagcaatacttctggagaaccaatgatggccttctcatccccatgctatttgacaagacatgtttgttcattgctttggttttccagctcctgtgaaccttgatcactgataatgattagttttttttctttcttatttcttagtattttgggggatttaaccctcaccaacaggtgaaaattcaggtagccaaccaactggactactaaaattcccaaggattaggttgattaagctttttatagaaattggtctagttgaactgctgggataatgtaagaactattataattgttcctggcgagtgaggttaccataacaagcaaaattgtttataagggtctatgcgaagatcatgtctgcctgaagtcaagctcctattattgccactgaccacccctagtctctgaagtcatgaagctctttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="-" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="46518" stop="45426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46218" g_stop="45726" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="-" ref_id="SGN-E314869" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46218" e_stop="45726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACGTGTTTCTTGAATTCTATGCAGCAAAAACATGTACTTAGGTAATGTAAATGAGAAGGGAGCAATACTTCTGGAGAACCAATGATGGCCTTCTCATCCCCATGCTATTTGACAAGACATGTTTGTTCATTGCTTTGGTTTTCCAGCTCCTGTGAACCTTGATCACTGATAATGATTAGTTTTTTTTCTTTCTTATTTCTTAGTATTTTGGGGGATTTAACCCTCACCAACAGGTGAAAATTCAGGTAGCCAACCAACTGGACTACTAAAATTCCCAAGGATTAGGTTGATTAAGCTTTTTATAGAAATTGGTCTAGTTGAACTGCTGGGATAATGTAAGAACTATTATAATTGTTCCTGGCGAGTGAGGTTACCATAACAAGCAAAATTGTTTATAAGGGTCTATGCGAAGATCATGTCTGCCTGAAGTCAAGCTCCTATTATTGCCACTGACCACCCCTAGTCTCTGAAGTCATGAAGCTCTTTGAA</genome_strand>
        <mrna_strand>ACAAACGTGTTTCTTGAATTCTATGCAGCAAAAACATGTACTTAGGTAATGTAAATGAGAAGGGAGCAATACTTCTGGAGAACCAATGATGGCCTTCTCATCCCCATGCTATTTGACAAGACATGTTTGTTCATTGCTTTGGTTTTCCAGCTCCTGTGAACCTTGATCACTGATAATGATTAGTTTTTTTTCTTTCTTATTTCTTAGTATTTTGGGGGATTTAACCCTCACCAACAGGTGAAAATTCAGGTAGCCAACCAACTGGACTACTAAAATTCCCAAGGATTAGGTTGATTAAGCTTTTTATAGAAATTGGTCTAGTTGAACTGCTGGGATAATGTAAGAACTATTATAATTGTTCCTGGCGAGTGAGGTTACCATAACAAGCAAAATTGTTTATAAGGGTCTATGCGAAGATCATGTCTGCCTGAAGTCAAGCTCCTATTATTGCCACTGACCACCCCTAGTCTCTGAAGTCATGAAGCTCTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E575823" ref_strand="+" ref_description="SGN-E575823 [35508]">
      <seq>cctttttgctgcaattttcacattggagagagaagcttcgcatgaatggagacgaatttcagaaacaggagatgaaacttcatcaatgttccaatcattatattctgcttgattttgattgttgtcgcgtagaaactgcgattctgttggtcaatttcatagcaattggatttttacctcgattcgatctgaggacttttgatattttttgctaatcgaagcggtgaggaatatttagataggtgattgtagaggataattttgtttgaaaaaatgccgtcgcacgcggatgtagatcggcagatcgagcaattgatggagtgcaagccgttatcggaggcggaggtgaagacgttgtgtgaacaagcaagggcgatactagtggaggaatggaatgtgcaaccggtgaaatgtccggtgacggtgtgcggtgatatccacggacagttttacgatctgattgagctttttcgaatcggcggcaacgctcctgatactaattatctcttcatgggagattatgttgaccgtggatactattctgtcgagactgtctcactattggttgctttgaaggtccgttatagagatagaatcacaattcttaggggaaaccacgaaagccgacagatcactcaagtgaatggttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="-" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="48851" stop="46686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48551" g_stop="48006" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48005" i_stop="47102" i_length="904">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47101" g_stop="46987" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="641" r_length="115" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="-" ref_id="SGN-E575823" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48551" e_stop="48006"/>
          <exon e_start="47101" e_stop="46987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTTGCTGCAATTTTCACA--GTAGAGAGAAGCTTCGCATGAATGGAGACGAATTTCAGAAACAGGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGA-TTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTGGTGAGTTTTGGTGATTAGGTTTCATTTTGTGATAGGAATTTGCATATGATTTGTTGGATTTTTTTATGCATTTAATGATTTGTTGTAGTGACATAGGTGGAATGTGAATGGACATAAATAGGATGTAGAAATGAGTGTTTCTGCTAATGTAAGCAGCACTTGAAGGATAGTAAAGTTTGTGCTTTTGTGTATCAAGTAGATTGTGAAGTGTAAGGATGCTGCAAAGTAGCAGCTTTATGGTGGTTATTTTGTGGTTTGCCGTGATTTCAGTATTGTATTTCTCAAAGTATTCATGATAAGGATGATATGTGGTTTGGCTGTTTGTTCATTTATTGGTAGTGTTACTATGATGTGTCACAAAAATGAAGCTTTATTTTGATCTATTTGTCGTTTATCCTCGAGAATGATGACGCGTGGTTGTGATGTGGATCTCTAATGTGCTTGGTGGTTCGAATATGACAAAGTAACGTCATGGCATTGATATAATGTTTGGAGGCAAATGTGGGAGATGTTTCTCTTCATTTGGTATATTTCTTTCGGTGCCAAACGCAACTCATTTTCATTTGTTATAGTTTAACCGAAAAGGCAGTGTTCTCTCAACTTACATCTGATAAGCATGGGTTTCATAAAATGACTGTCTTTTGTTTAAATGACTGTTTTGATAGTAGTTAGAGGCTTCCTTTTAATTTATTTTTCCCAAATATTTTTGCATCTAAGGTGGATTTTATCATATACATCGATGACAATGTACATTTTATTCACCTTTTACTGTTTCTTTTGATTGTTCCCTATCTTACCTCTTCATGCTTACTTATTTGAATGTTGACTAGTACCTTGGTTTCCTTGTTGGTCAAGTACATTAGCATTCATTGTTTTATCATTAATAATTGCCTAATTAATGCAGACCGTGGATACTATTCTGTCGAGACTGTCTCACTATTGGTTGCTTTGAAGGTTCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCATGAAAGCCGACAGATCACTCAAGT</genome_strand>
        <mrna_strand>CCTTTTTGCTGCAATTTTCACATTGGAGAGAGAAGCTTCGCATGAATGGAGACGAATTTCAGAAAC-----A-G-----GAGA-TGAAA-C--------TTCATCAATGTTCCAATCATTATATTCTGCTTGATTTTGATTGTTGTCGCGTAGAAACTGCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTTACCTCGATTCGATCTGAGGACTTTT-GAT-ATTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGATAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCACGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTGGATACTATTCTGTCGAGACTGTCTCACTATTGGTTGCTTTGAAGGTCCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCACGAAAGCCGACAGATCACTCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319050" ref_strand="+" ref_description="SGN-E319050 [cTOB-14-J3]">
      <seq>ggagatgattcagagattgaaaccctagtttcttcatcaatgttccaatcgttaatttctgtttgattttaatcttcggcgtgcaaaaactccgattctgttggtcaatttcatagcaattggattttacctcgattcgatctgaggacttttgggtctttttttgcaaatcgaagcggtgaggaatatttaggcaggtgattgtagaggataattttgtttgaaaaaatgccgtcgcacgcggatgtagatcggcagatcgagcaattgatggagtgcaagccgttatcggaggcggaggtgaagacgttgtgtgaacaagcaagggcgatactagtggaggaatggaatgtgcaaccggtgaaatgtccggtgacggtgtgcggtgatatccatggacagttttacgatctgattgagctttttcgaatcggcggcaacgctcctgatactaattatctcttcatgggagattatgttgaccgtggatactattctgtcgagactgtctcactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="-" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="48786" stop="46766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48486" g_stop="48006" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48005" i_stop="47102" i_length="904">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47101" g_stop="47066" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="517" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="-" ref_id="SGN-E319050" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48486" e_stop="48006"/>
          <exon e_start="47101" e_stop="47066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTGGTGAGTTTTGGTGATTAGGTTTCATTTTGTGATAGGAATTTGCATATGATTTGTTGGATTTTTTTATGCATTTAATGATTTGTTGTAGTGACATAGGTGGAATGTGAATGGACATAAATAGGATGTAGAAATGAGTGTTTCTGCTAATGTAAGCAGCACTTGAAGGATAGTAAAGTTTGTGCTTTTGTGTATCAAGTAGATTGTGAAGTGTAAGGATGCTGCAAAGTAGCAGCTTTATGGTGGTTATTTTGTGGTTTGCCGTGATTTCAGTATTGTATTTCTCAAAGTATTCATGATAAGGATGATATGTGGTTTGGCTGTTTGTTCATTTATTGGTAGTGTTACTATGATGTGTCACAAAAATGAAGCTTTATTTTGATCTATTTGTCGTTTATCCTCGAGAATGATGACGCGTGGTTGTGATGTGGATCTCTAATGTGCTTGGTGGTTCGAATATGACAAAGTAACGTCATGGCATTGATATAATGTTTGGAGGCAAATGTGGGAGATGTTTCTCTTCATTTGGTATATTTCTTTCGGTGCCAAACGCAACTCATTTTCATTTGTTATAGTTTAACCGAAAAGGCAGTGTTCTCTCAACTTACATCTGATAAGCATGGGTTTCATAAAATGACTGTCTTTTGTTTAAATGACTGTTTTGATAGTAGTTAGAGGCTTCCTTTTAATTTATTTTTCCCAAATATTTTTGCATCTAAGGTGGATTTTATCATATACATCGATGACAATGTACATTTTATTCACCTTTTACTGTTTCTTTTGATTGTTCCCTATCTTACCTCTTCATGCTTACTTATTTGAATGTTGACTAGTACCTTGGTTTCCTTGTTGGTCAAGTACATTAGCATTCATTGTTTTATCATTAATAATTGCCTAATTAATGCAGACCGTGGATACTATTCTGTCGAGACTGTCTCACTAT</genome_strand>
        <mrna_strand>GGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCAAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTGGATACTATTCTGTCGAGACTGTCTCACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447253" ref_strand="+" ref_description="SGN-E447253 [cSTA-25-O20]">
      <seq>ttcgcatgaatggagacgaatttcagaaataggagatgatttagatattgaaaccctagttacttcatcaatgttccaatcattattttctgcttgattttgattgctgtcgcgcagaaactgcgattctgttggtcaatttcatagcaattggatttttacctcgattcgatctgaggacttttgatattttttgctaatcgaagcggtgaggaatatttagataggtgattgtagaggataattttgtttgaaaaaatgccgtcgcacgcggatgtagatcggcagatcgagcaattgatggagtgcaagccgttatcggaggcggaggtgaagacgttgtgtgaacaagcaagggcgatactagtggaggaatggaatgtgcaaccggtgaaatgtccggtgacggtgtgcggtgatatccacggacagttttacgatctgattgagctttttcgaatcggcggcaacgctcctgatactaattatctcttcatgggagattatgttgaccgtggatactattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="-" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="48817" stop="46784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48517" g_stop="48006" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48005" i_stop="47102" i_length="904">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47101" g_stop="47084" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="529" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="-" ref_id="SGN-E447253" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48517" e_stop="48006"/>
          <exon e_start="47101" e_stop="47084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCATGAATGGAGACGAATTTCAGAAACAGGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGA-TTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTGGTGAGTTTTGGTGATTAGGTTTCATTTTGTGATAGGAATTTGCATATGATTTGTTGGATTTTTTTATGCATTTAATGATTTGTTGTAGTGACATAGGTGGAATGTGAATGGACATAAATAGGATGTAGAAATGAGTGTTTCTGCTAATGTAAGCAGCACTTGAAGGATAGTAAAGTTTGTGCTTTTGTGTATCAAGTAGATTGTGAAGTGTAAGGATGCTGCAAAGTAGCAGCTTTATGGTGGTTATTTTGTGGTTTGCCGTGATTTCAGTATTGTATTTCTCAAAGTATTCATGATAAGGATGATATGTGGTTTGGCTGTTTGTTCATTTATTGGTAGTGTTACTATGATGTGTCACAAAAATGAAGCTTTATTTTGATCTATTTGTCGTTTATCCTCGAGAATGATGACGCGTGGTTGTGATGTGGATCTCTAATGTGCTTGGTGGTTCGAATATGACAAAGTAACGTCATGGCATTGATATAATGTTTGGAGGCAAATGTGGGAGATGTTTCTCTTCATTTGGTATATTTCTTTCGGTGCCAAACGCAACTCATTTTCATTTGTTATAGTTTAACCGAAAAGGCAGTGTTCTCTCAACTTACATCTGATAAGCATGGGTTTCATAAAATGACTGTCTTTTGTTTAAATGACTGTTTTGATAGTAGTTAGAGGCTTCCTTTTAATTTATTTTTCCCAAATATTTTTGCATCTAAGGTGGATTTTATCATATACATCGATGACAATGTACATTTTATTCACCTTTTACTGTTTCTTTTGATTGTTCCCTATCTTACCTCTTCATGCTTACTTATTTGAATGTTGACTAGTACCTTGGTTTCCTTGTTGGTCAAGTACATTAGCATTCATTGTTTTATCATTAATAATTGCCTAATTAATGCAGACCGTGGATACTATTCTG</genome_strand>
        <mrna_strand>TTCGCATGAATGGAGACGAATTTCAGAAATAGGAGATGATTTAGATATTGAAACCCTAGTTACTTCATCAATGTTCCAATCATTATTTTCTGCTTGATTTTGATTGCTGTCGCGCAGAAACTGCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTTACCTCGATTCGATCTGAGGACTTTT-GAT-ATTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGATAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCACGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTGGATACTATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275816" ref_strand="+" ref_description="SGN-E275816 [cLEN-18-H21]">
      <seq>atgaatggagacgaatttcagaaacaggagatgattcagagattgaaaccctagtttcttcatcaatgttccaatcgttaatttctgtttgattttaatcttcggcgtgcaaaaactccgattctgttggtcaatttcatagcaattggattttacctcgattcgatctgaggacttttgggtctttttttgctaatcgaagcggtgaggaatatttaggcaggtgattgtagaggataattttgtttgaaaaaatgccgtcgcacgcggatgtagatcggcagatcgagcaattgatggagtgcaagccgttatcggaggcggaggtgaagacgttgtgtgaacaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="-" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="48812" stop="47864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48512" g_stop="48164" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="-" ref_id="SGN-E275816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48512" e_stop="48164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGGAGACGAATTTCAGAAACAGGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGC</genome_strand>
        <mrna_strand>ATGAATGGAGACGAATTTCAGAAACAGGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350641" ref_strand="+" ref_description="SGN-E350641 [cTOS-7-C13]">
      <seq>aaaattctctaaggtttttttaagtttttttgtttttctagtattttttttgttattgttgattgaagtacttgaaaatggaggtgttacaacaaaaatgaattatgttgatgatcaagttatgaaaaatagcaaagtagtgatgaaaacacacaaaagatcaagtggtgctcatcatgttcatcaaaaaattgatttcaatttggtgagtaaaagaagagttcctaatggtcctgacccaatccacaacagaagagctcggagttctcgtagaccaccaggccaagcttccaaaggaaaactcaacattaagccataattaacaaattaggccaaattagataattaaggtttgtgagatgtgttttttttttttttttgaaaaaaaaaaaaacttgtatgtaattgttgaaaaagggaagtctctatacatattgtcagatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="90323" stop="93651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90623" g_stop="90874" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90875" i_stop="93159" i_length="2285">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93160" g_stop="93350" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="445" r_length="193" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="446" polyA_stop="455"/>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E350641" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90623" e_stop="90874"/>
          <exon e_start="93160" e_stop="93350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCTCTAAGGTTTTTTTAAGTTTTTTTGTTTTTCTAGTATTTTTTTTGTTATTGTTGATTGAAGTACTTGAAAATGGAGGTGTTACAACAAAAATGAATTATGTTGATGATCAAGTTATGAAAAATAGCAAAGTAGTGATGAAAACACACAAAAGATCAAGTGGTGCTCATCATGTTCATCAAAAAATTGATTTCAATTTGGTGAGTAAAAGAAGAGTTCCTAATGGTCCTGACCCAATCCACAACAGGTTTGTCTTTACTTTATTTCTTTATGGAGCTTTTTTTCTCTCTATAAACTTAATTGTCAAAAACATATCTGGATTATCGAGAGTTTTACATACTAATTATATATTAATTGTTCACTTGTCATATCAGAACTATTGTTATCTATGTAGTTATAAAACATACTTTAAGATGTTTAGTTTTCTTACTTGAACTATCACCGTCGTTCATGTACGAAAAGAGAACACGTGATAGTTGAAGTGTGTGTTTAACGAAAGTGGTGATAGTGTCTGTTGAAAAAGGAAATGATTGATAGTTAAAGTATAAAATTTGCGAAAAAATAATATTTAGCTATAAATCAATACTTCTTTAAAGTTGAATATTCTAAATAATTTGATAGTATGAAAAAAAATATGTATATTAATTACATATATGCCCTCACAAACCACATCTTATATAGTTTTTATAAAATATTTACATTATATATAGTATTGATCATATAAATTTTTATATTATAGTGTAGTTTAACCTATTTAGCCGATTTTCTATGTTCTCAATCAACATTTAATAAGTATAAGAGTGACATGTAATGGAAAAATTCTTTTAAACAATTTAATTGTATAAGTTATTATAATTATAATTATAATTATGATCGTCTAATGAGCATTTGATATTAATAATTGATATTTTCAGAAGTTTGGCTCACTTCTAGATGCAATTAGCTAGTGGAAGTAATAAAAAAACTATATTTTAAGACTTCCAAGAGATTTTGCCAATTATAAAAGTAAATTTGAAGTTATATTAAAACAAAAAAAAGTAACTCTATCATATAAATTTTAAAAAAAATCTCTTCAAAGCTATAGATTGTTCTAATAATTATTAATTTTTCTTCCTTTTTTTGGGAATAATTCATCAATTATTTTGAATGAAAAATTTCATATTAATTGATATAGTTCCATGTTCTTTCCCAAATTAAAAGAACAAGACCAATTCAACTTTCTTATGAGGAAAAATTTAATTTCGGATTAATTATCATACTGTTCATTTATTAGCTCATTTCATTTTTATTAATTCATTTTAGTCACCAAAATCGTGATTGATATCGTAGCTTAAATCAATCCATGAAAATCTTATTAAAATATTTTAAAAGGATATAATTTTATCTTATATGTTATATATAGTCATAAATAAAAAAATAGTTTTATTAGGTATTAAAAAATTATTTTATAAAAATATTTAAAACTGAGTATAAATTCAGCGAGTTAGATTTTGACCTATTTTTTAAAGCTCATTTCAACTCATATAACTTTTTACTCGTCTATTTATTAACTCAAAATATTTTAACCCGTTCAAATTAAGTTCGATCGATCTTATTTATTTTACGTAGAGCCCATAAAAGATGTATTTTTGAGACAAAAGTAGTAGGGTTTGCATGCTTAACTGTTACATCAAGTACTCCCACTCTTAGATTCTGTTCAAAGTTTTTGTTTACTGAATTTGTGTAACTTTAAGTTAATGAATAAATAAAATAAAAGGAATTAATTTAGAAAAAAGAAAAAGTATCTGTGTTCTGTTTTGTTGTCTTTCACTTTATTTATTCTCTTATAATTATAAATGAATAATAAAGCTAGCTTAATTATCATGATAATTAATTAACCTTTTCATTTTGTTTTCTATGCAATTTACGAGGTTCTAATTAATTAATTAACCTTTTCATGACATCTCTTTTTTTTTCCTTTTGCTTTCTTTTTTACCCTTTATCACTAAAAAAAAGCTTTTTCATCACTATAGATGCAAATCATATAAATATCTTACATATCAAAAGAATATTTTCTTAACCAAATTTAATTTTCATATATTAACGTTAGAGTCGGAATCAGTATTAAGTTTTGTTAGGGGTTCACAATTAATATTTTTATAATTTTCTAGTACAAATATAAGATATACAGAAAAGATACTGAGTTCGTTTGAATATACAAACCTCGCCTAATTAACGTGTGTGATCAACTCATCTAAGAATTTAAATTTTTATAGCCAAACATGTAAAAAATAAAAAAATTTATAATGGGTGATGATAAGAATATATCGCACTCAGAATTTTGTTTGCTCTAATACTATATTAAAGTACGTAATCTCAAGCTATAATCCCTAACTAAAAAGCTCTAAGTTGATTGAAACTTCTCGTAATTTGTTGTTAATCCATAGCTAAATGAAGTTAACGTGAAAATTTTGTTATTCAGCTACGAAATTTTATCTATGACGTTTGTGTATGTAACTAAATTTATTTATATCTAATTATTTTTTTTAACAGAAGAGCTCGGAGTTCTCGTAGACCACCAGGCCAAGCTTCCAAAGGAAAACTCAACATTAAGCCATAATTAACAAATTAGGCCAAATTAGATAATTAAGGTTTGTGAGATGTGTTTTTTTTTTT-TTTTG-AAAAAAAAAAAACTTGTATGTAATTGTTGAAAAAGGGAAGTCTCTATACATATTGTCAGATGA</genome_strand>
        <mrna_strand>AAAATTCTCTAAGGTTTTTTTAAGTTTTTTTGTTTTTCTAGTATTTTTTTTGTTATTGTTGATTGAAGTACTTGAAAATGGAGGTGTTACAACAAAAATGAATTATGTTGATGATCAAGTTATGAAAAATAGCAAAGTAGTGATGAAAACACACAAAAGATCAAGTGGTGCTCATCATGTTCATCAAAAAATTGATTTCAATTTGGTGAGTAAAAGAAGAGTTCCTAATGGTCCTGACCCAATCCACAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTCGGAGTTCTCGTAGACCACCAGGCCAAGCTTCCAAAGGAAAACTCAACATTAAGCCATAATTAACAAATTAGGCCAAATTAGATAATTAAGGTTTGTGAGATGTGTTTTTTTTTTTTTTTTGAAAAAAAAAAAAACTTGTATGTAATTGTTGAAAAAGGGAAGTCTCTATACATATTGTCAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440572" ref_strand="+" ref_description="SGN-E440572 [cSTA-17-O10]">
      <seq>gaggaactgtgagccgcccttggctcgctaccccgattccattggagaattattagctcttaaaacaatgacccattacctcgaaatgatgctatcaccggagctgccagaatcagttggagagttgcagaatcttgtcatattgagattgactaactgtaagcgactgcacaaactgccagattctattgggaaactgaagaacttagtacacttgctaatggaggagactgcagtaacagtattacctaaaacttttgggatgctatcgagcttaatgattctgaggatgggaaagaagcctttctgtcaggtaccacaaagtactgaaatcacagaaacagctacctatgcagaaagggaaaccgtacctattgtgcttccttcatctttctcaaagttatcctggttagaagaacttaatgcacgtgcatggcgaatagttgggaaaatacctgatgattttgagaaactatcatctttggagttcatcaatcttggtcacaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="-" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="98999" stop="97835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98711" g_stop="98405" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98404" i_stop="98333" i_length="72">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98332" g_stop="98135" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="511" r_length="198" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="-" ref_id="SGN-E440572" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98711" e_stop="98405"/>
          <exon e_start="98332" e_stop="98135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAACTGTGAG-CACC-TTGGATCACTACC-CGATTCCATTGGAGAATTATTAGCTCTTAGAACAATGA-CTATTA-CTCGAAATGATGCTATCA-CGGAGCTGCCAGAATCAGTTGGAGAGTTGCAGAATCTCGTCATATTGAGATTGACCAAATGTAAGCGTCTGCACAAACTGCCAGATTCTATTGGGGAACTAAAGAACTTAGTACACTTGTTAATGGAGGAGACTGCAGTAACAGTATTACCTCAAACTTTTGGGATGCTATCGAGCTTAATGATTCTGAGGATGGGAAAGAAGCCTTTCCTTCAGGTATACTGTGGTGAAAATTAGTATAAATATTATATGTTGAATCCACATTTTCAAAAAATTACACTTGTGCAGGTACCACAAAGTACTGAAATCACAGAAACAGCTACCTATGCAGAAAGGGAAACCGTACCTATTGTGCTTCCTTCATCTTTCTCAAAGTTATCCTTGTTAGAAGAACTTAATGCACGTGCATGGCGAATAGTTGGGAAAATACCTGATGATTTTGAGAAACTGTCATCTTTGGAGTTCATCGATCTCGGTCACAATGAT</genome_strand>
        <mrna_strand>GAGGAACTGTGAGCCGCCCTTGGCTCGCTACCCCGATTCCATTGGAGAATTATTAGCTCTTAAAACAATGACCCATTACCTCGAAATGATGCTATCACCGGAGCTGCCAGAATCAGTTGGAGAGTTGCAGAATCTTGTCATATTGAGATTGACTAACTGTAAGCGACTGCACAAACTGCCAGATTCTATTGGGAAACTGAAGAACTTAGTACACTTGCTAATGGAGGAGACTGCAGTAACAGTATTACCTAAAACTTTTGGGATGCTATCGAGCTTAATGATTCTGAGGATGGGAAAGAAGCCTTTCTGTCAG........................................................................GTACCACAAAGTACTGAAATCACAGAAACAGCTACCTATGCAGAAAGGGAAACCGTACCTATTGTGCTTCCTTCATCTTTCTCAAAGTTATCCTGGTTAGAAGAACTTAATGCACGTGCATGGCGAATAGTTGGGAAAATACCTGATGATTTTGAGAAACTATCATCTTTGGAGTTCATCAATCTTGGTCACAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E599595" ref_strand="+" ref_description="SGN-E599595 [52587]">
      <seq>aaacaaaggagttctgatagaagatatcgttgacgagacatttgaggtgagagaattgggtgatactgactcactaaaactattcagttactatgcatttagaagaccagacccatccccaacttttctgaatttatccaagcaaattgtctcaattactggaaagctaccattggctcttgaagtttttggttctttcttgtttgataaaagaagcgaggaggaatgggtagatgctctaggaaagctaaaacaaattcgctcaccccatcttcaagacatcttgaaaataagttacgatggtcttgatgatgaagagaagtgtatattcctggatgttgcatgtttatttcttgatcaactagataagaaagtcgaaaatgtaattgatgtgatggaaggatgtggttttagagccaggattgcatttgacacattgaccactagatcattggttaaggtgattgatggtggggacttgtggatgcatgaccagataagagatatgggaagacagattgttagggaagaaggcttttccgaacctggaaaacgcagcaggctgtgggatgttgctgatgttttaagtgtgctacaaggaaggaagggaacacagcacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="-" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="101406" stop="100193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101106" g_stop="100500" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100499" i_stop="100242" i_length="258">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100241" g_stop="100227" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="622" r_length="15" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="-" ref_id="SGN-E599595" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101106" e_stop="100500"/>
          <exon e_start="100241" e_stop="100227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAAGAAGTTCTGATAGAAGACATCGTTGACGAGACGTTTGAGGTGAGAGAATTGGGTGATACTGACTCACTAAAACTATTCAGTTACCATGCATTTAGAAGACCAGACCCATCCCCAACTTTTCTGAAATTATCTAAGCAAATTGTCTCAATTACTGGAAAGCTACCATTGGCTCTCGAAGTTTTTGGTTCTTTCTTGTTTGATAAAAGAAGCGAGGAGGAATGGGTAGATGCTCTAGGAAAGCTAAAACAAATTCGCTCACCCCGTCTTCAAGACGTCTTGAAAATAAGTTACGATGGTCTTGATGATGAAGAGAAGTGTATATTCCTGGATGTTGCATGTTTATTTCTTGATCAACTAGATAAGAAAGTCGAAAATGTAATTGATGTGATGGAAGGATGTGGTTTTAGAGCCAGGATTGCTTTTGACACATTGACCACTAGATCATTGATTAAGGTGATTGATGGTGGGGACTTGTGGATGCATGACCAGATAAGAGATATGGGAAGACAGATTGTTAGGCAAGAAGGCTTTTCCGATCCTGGAAAGCGCAGCAGGCTCTGGGATGTTGCTGATGTTTTGAGTGTGCTACAAGGAAGAAAGGTATGACTTTCTTTATGAATTTAACTTATACACTACGCCCGTAAATTCTTATATTGTCAGAATTTTCTAACCTGTCTTGTTTTCCCTAAACAGATCCTTCTTTTTACGAACAGTTACCTGTAGTCATATTAGGTGACCATAAAGAAGTTAACGTCCTTTTGTTATGTTCTACAAGAACTTCCAGCTGCTTTCTTCTGATTATTTTGCTGCTAAACTTATATTGTGATAGAAAAATTTGATGTGTTATAAAAACAACAGGGAACACAACATATC</genome_strand>
        <mrna_strand>AAACAAAGGAGTTCTGATAGAAGATATCGTTGACGAGACATTTGAGGTGAGAGAATTGGGTGATACTGACTCACTAAAACTATTCAGTTACTATGCATTTAGAAGACCAGACCCATCCCCAACTTTTCTGAATTTATCCAAGCAAATTGTCTCAATTACTGGAAAGCTACCATTGGCTCTTGAAGTTTTTGGTTCTTTCTTGTTTGATAAAAGAAGCGAGGAGGAATGGGTAGATGCTCTAGGAAAGCTAAAACAAATTCGCTCACCCCATCTTCAAGACATCTTGAAAATAAGTTACGATGGTCTTGATGATGAAGAGAAGTGTATATTCCTGGATGTTGCATGTTTATTTCTTGATCAACTAGATAAGAAAGTCGAAAATGTAATTGATGTGATGGAAGGATGTGGTTTTAGAGCCAGGATTGCATTTGACACATTGACCACTAGATCATTGGTTAAGGTGATTGATGGTGGGGACTTGTGGATGCATGACCAGATAAGAGATATGGGAAGACAGATTGTTAGGGAAGAAGGCTTTTCCGAACCTGGAAAACGCAGCAGGCTGTGGGATGTTGCTGATGTTTTAAGTGTGCTACAAGGAAGGAAG..................................................................................................................................................................................................................................................................GGAACACAGCACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484953" ref_strand="+" ref_description="SGN-E484953 [cSTE-16-A9]">
      <seq>atcaaactgagactcctccaaatcaatcatgttaaattggttggagatttcaagctattacctgctgacctgaagtggctgcagtggaaaggttgccctttggaagtaattcctccagagttgttgtcccgaaagattgcagttcttgatttatcagagagcatgatcacacaggtctggaacgagaaaaagtggaatttataccagaacaagatggcagagcagctgaaggttatgaatctacgtagttgtcgccaacttaaggaaatccctgatttatctggacttcaattggagaagctgattcttgaggaatgcagtgaactggttaagatccatccctcaattggagacttgactatgttgacccttctaaacatcaagggttgtaagaatcttttggcatttccagacgatgtgtctggattgaaacgtcttgaagtacttatcctatctggttgctctagtctaacaaaattaccagaggatttgagtggctggaaatccttgagagagcttcttctagatggtaccgcaataacaaagctacctaattctatcttccgcctgaagaatcttcagatgttgaatttaaatgattgccagtctttggagttgctgcctacagctattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="116795" stop="118984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117094" g_stop="117306" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117307" i_stop="118262" i_length="956">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.822" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118263" g_stop="118684" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="635" r_length="422" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E484953" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117094" e_stop="117306"/>
          <exon e_start="118263" e_stop="118684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAACTGAGACTCCTCCAAATCAATCATGTTAAATTGGTTGGAGATTTCAAGCTATTACCTGCTGACCTAAAGTGGCTGCAGTGGAAAGGTTGCCCTTTGGAAGTTATTCCTCCAGAGTTGTTGTCCCGAAAGATTGCAGTTCTTGATATATCGGAGAGCATGATCACACAGGTCTGGATCAAGAAAAAGTGGAATTTATACCAGAACAAGGTAAGTGAAATAGTTCAACCAATCTCCTTCTTTACAACTTTGTTTGATGGTAAGTAGGAAGAACTACATGTCTCCTTTTAGACAACTTTGTTTGCTGGTAATTAATTAAAAATACTACATGTCCCTTTAATCATCCATAGATGATTTGTAGATTCACAAGCTTTGTCAGGTAAAGAAAGGTAGAGGTAGGAGGAAAAAGCTTTGTTAAATGCTCCCATAAGAAGGTGTGAAAGATTGATAGAGGTGGGTTTAAAGAGGAGTAGAGGTAGGCCGATAAAACTTTGTCAGATGCCTCGGTGAGGAAGTGTGAGAGGTTGATAGAGGTGAGTTTAAAGAAAAGTACATGTAGGCCGAAGAAGTACTGAAGAGTGGTGATTTAGACAGGACATGGTACGACTTCAGCTTATCGAGGACATGACCTTAGGAGAATATACAGGTCGCAATTAGGGTTGAAGGTAGTTGAGGGCTGTCTCACTTCCCTAGGGGGTAGATTTGGTGGGTAGATAGTATTAGCATTATTCTTATAGTTTCTTGTTCTACGATTACTGCTACCACCGGTTGTTTCTTGTGCTTTGTTTACCAAATTATTCTGCTCTCTATGCCTTGTTCTTTCTCTGTGTTGTCTTTTTCAAAATTGTCTTGTTATGTATTACTTGAGCTGAGGGTCTTTCGGGAACAACCCCTCCTATTTTCCACGAGGTAGGGGTAAGGTGTGCGTACACTCTACCCTTCCCATACCCTACTTGTGGTTATAAGTAAATGACTAGTTATTTTTCAGGCTCTATGAAGCTGAAGCACACAAGGAAAAGGTACAATTTTTATTGTATTAATTTGAAAGCTAGGCGTTATCAGCTCCTTTCCCTTAATGTTTAACTTCTTGGCTTTACTGTCTACTGATCTCAAAGGGATATTCTGCAAGCTTTTATGCAATGACTGAGAAAATCTTCATTTGATAGATGGCAGAGCAGCTGAAGGTTATGAATCTACGTAGGTGTCGCCAACTTAAGGACATCCCTGATTTATCTGGACTTCAATTGGAGAAGCTGATTCTTGAGGAATGCAATGAACTGGTTAAGATCCATCCATCAATTGGAGACTTGACTATGTTGACCCTTCTAAACATGAAGGGTTGTAAGAATCTTTTGGCATTTCCAGATGATGTGTCTGGATTGAAACGTCTTGAAGTACTTATCCTATCTGATTGCTCAAGTCTAACAAAATTACCAGAGGACTTAGGTGGCTGGAAATCCTTGAGAGAGCTTCTTCTTGATGGTACCGCAATAACAGAGCTACCTAACTCTATCTTCCGCCTGAAGAATCTTCAGATGTTGAATTTAAATGATTGCTGGTCTTTGAAGTTGTTGCCTACAGCTATCGG</genome_strand>
        <mrna_strand>ATCAAACTGAGACTCCTCCAAATCAATCATGTTAAATTGGTTGGAGATTTCAAGCTATTACCTGCTGACCTGAAGTGGCTGCAGTGGAAAGGTTGCCCTTTGGAAGTAATTCCTCCAGAGTTGTTGTCCCGAAAGATTGCAGTTCTTGATTTATCAGAGAGCATGATCACACAGGTCTGGAACGAGAAAAAGTGGAATTTATACCAGAACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCAGAGCAGCTGAAGGTTATGAATCTACGTAGTTGTCGCCAACTTAAGGAAATCCCTGATTTATCTGGACTTCAATTGGAGAAGCTGATTCTTGAGGAATGCAGTGAACTGGTTAAGATCCATCCCTCAATTGGAGACTTGACTATGTTGACCCTTCTAAACATCAAGGGTTGTAAGAATCTTTTGGCATTTCCAGACGATGTGTCTGGATTGAAACGTCTTGAAGTACTTATCCTATCTGGTTGCTCTAGTCTAACAAAATTACCAGAGGATTTGAGTGGCTGGAAATCCTTGAGAGAGCTTCTTCTAGATGGTACCGCAATAACAAAGCTACCTAATTCTATCTTCCGCCTGAAGAATCTTCAGATGTTGAATTTAAATGATTGCCAGTCTTTGGAGTTGCTGCCTACAGCTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427059" ref_strand="+" ref_description="SGN-E427059 [STM-47-P11]">
      <seq>atcaaactgagactcctccaaatcaatcatgttaaattggttggagatttcaagctattacctgctgacctgaagtggctgcagtggaaaggttgccctttggaagtaattcctccagagttgttgtcccgaaagattgcagttcttgatttatcagagagcatgatcacacaggtctggaacgagaaaaagtggaatttataccagaacaagatggcagagcagctgaaggttatgaatctacgtagttgtcgccaacttaaggaaatccctgatttatctggacttcaattggagaagctgattcttgaggaatgcagtgaactggttaagatccatccctcaattggagacttgactatgttgacccttctaacatcaagggttgtaagaatcttttggcatttccagacgatgtgtctggattgaaacgtcttgaagtacttatcctatctggttgctctagtctaacaaaattaccagaggatttgagtggctggaaatccttgagagagcttcttctagatggtaccgcaataacaaagctacctaattctatcttccgcctgaagaatcttcagatgttgaatttaaatgattgccagtctttggagttgctgcctacagctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="116795" stop="118981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117094" g_stop="117306" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117307" i_stop="118262" i_length="956">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.822" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118263" g_stop="118682" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="632" r_length="419" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E427059" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117094" e_stop="117306"/>
          <exon e_start="118263" e_stop="118682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAACTGAGACTCCTCCAAATCAATCATGTTAAATTGGTTGGAGATTTCAAGCTATTACCTGCTGACCTAAAGTGGCTGCAGTGGAAAGGTTGCCCTTTGGAAGTTATTCCTCCAGAGTTGTTGTCCCGAAAGATTGCAGTTCTTGATATATCGGAGAGCATGATCACACAGGTCTGGATCAAGAAAAAGTGGAATTTATACCAGAACAAGGTAAGTGAAATAGTTCAACCAATCTCCTTCTTTACAACTTTGTTTGATGGTAAGTAGGAAGAACTACATGTCTCCTTTTAGACAACTTTGTTTGCTGGTAATTAATTAAAAATACTACATGTCCCTTTAATCATCCATAGATGATTTGTAGATTCACAAGCTTTGTCAGGTAAAGAAAGGTAGAGGTAGGAGGAAAAAGCTTTGTTAAATGCTCCCATAAGAAGGTGTGAAAGATTGATAGAGGTGGGTTTAAAGAGGAGTAGAGGTAGGCCGATAAAACTTTGTCAGATGCCTCGGTGAGGAAGTGTGAGAGGTTGATAGAGGTGAGTTTAAAGAAAAGTACATGTAGGCCGAAGAAGTACTGAAGAGTGGTGATTTAGACAGGACATGGTACGACTTCAGCTTATCGAGGACATGACCTTAGGAGAATATACAGGTCGCAATTAGGGTTGAAGGTAGTTGAGGGCTGTCTCACTTCCCTAGGGGGTAGATTTGGTGGGTAGATAGTATTAGCATTATTCTTATAGTTTCTTGTTCTACGATTACTGCTACCACCGGTTGTTTCTTGTGCTTTGTTTACCAAATTATTCTGCTCTCTATGCCTTGTTCTTTCTCTGTGTTGTCTTTTTCAAAATTGTCTTGTTATGTATTACTTGAGCTGAGGGTCTTTCGGGAACAACCCCTCCTATTTTCCACGAGGTAGGGGTAAGGTGTGCGTACACTCTACCCTTCCCATACCCTACTTGTGGTTATAAGTAAATGACTAGTTATTTTTCAGGCTCTATGAAGCTGAAGCACACAAGGAAAAGGTACAATTTTTATTGTATTAATTTGAAAGCTAGGCGTTATCAGCTCCTTTCCCTTAATGTTTAACTTCTTGGCTTTACTGTCTACTGATCTCAAAGGGATATTCTGCAAGCTTTTATGCAATGACTGAGAAAATCTTCATTTGATAGATGGCAGAGCAGCTGAAGGTTATGAATCTACGTAGGTGTCGCCAACTTAAGGACATCCCTGATTTATCTGGACTTCAATTGGAGAAGCTGATTCTTGAGGAATGCAATGAACTGGTTAAGATCCATCCATCAATTGGAGACTTGACTATGTTGACCCTTCTAAACATGAAGGGTTGTAAGAATCTTTTGGCATTTCCAGATGATGTGTCTGGATTGAAACGTCTTGAAGTACTTATCCTATCTGATTGCTCAAGTCTAACAAAATTACCAGAGGACTTAGGTGGCTGGAAATCCTTGAGAGAGCTTCTTCTTGATGGTACCGCAATAACAGAGCTACCTAACTCTATCTTCCGCCTGAAGAATCTTCAGATGTTGAATTTAAATGATTGCTGGTCTTTGAAGTTGTTGCCTACAGCTATC</genome_strand>
        <mrna_strand>ATCAAACTGAGACTCCTCCAAATCAATCATGTTAAATTGGTTGGAGATTTCAAGCTATTACCTGCTGACCTGAAGTGGCTGCAGTGGAAAGGTTGCCCTTTGGAAGTAATTCCTCCAGAGTTGTTGTCCCGAAAGATTGCAGTTCTTGATTTATCAGAGAGCATGATCACACAGGTCTGGAACGAGAAAAAGTGGAATTTATACCAGAACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCAGAGCAGCTGAAGGTTATGAATCTACGTAGTTGTCGCCAACTTAAGGAAATCCCTGATTTATCTGGACTTCAATTGGAGAAGCTGATTCTTGAGGAATGCAGTGAACTGGTTAAGATCCATCCCTCAATTGGAGACTTGACTATGTTGACCCTTCT-AACATCAAGGGTTGTAAGAATCTTTTGGCATTTCCAGACGATGTGTCTGGATTGAAACGTCTTGAAGTACTTATCCTATCTGGTTGCTCTAGTCTAACAAAATTACCAGAGGATTTGAGTGGCTGGAAATCCTTGAGAGAGCTTCTTCTAGATGGTACCGCAATAACAAAGCTACCTAATTCTATCTTCCGCCTGAAGAATCTTCAGATGTTGAATTTAAATGATTGCCAGTCTTTGGAGTTGCTGCCTACAGCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735388" ref_strand="+" ref_description="SGN-E735388 [LC01BE05]">
      <seq>cttctaaacatgaagggttgtaagaatcttttggcatttccagatgatgtgtctggattgaaacgtcttgaagtacttatcctatctgattgctcaagtctaacaaaattaccagaggacttaggtggctggaaatccttgagagagcttcttcttgatggtaccgcaataacagagctacctaactctatcttccgcctgaagaatcttcagatgttgaatttaaatgattgctggtctttgaagttgttgcctacagctatcgggaatctaagttcgctgagctctctatctcttagtggatcagctttaaaggaattgcctgattcaattggaaatttgaaagatcttgaggaattaagtttgagaatgtgcaagggactcatctcacttcctgattccctcggaaatcttagatcattaatacgactttatcttgacaacagctccataaaagaattgccaccttctgttggttcattatctcaattgaagttcctttcactcagcaattgcaagtcctttagtgagttgcccaatttcaagaatagcttctcgtcattgattaggctttgtctacaagggacctcagttagtgaacaaagtttccagttaggaagcttcgagtcccttgagattcttgagctggggtactgcacttcaatcagatctttatctagctcaattggaaagatgtcatgtttaactactttggacctacataatacatcaatttctgagttgccagacgagatatgtttattggaaaaactttgggagctgaacctgaacaactgtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="118119" stop="119332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118419" g_stop="119220" g_length="802"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="802" r_length="802" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E735388" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118419" e_stop="119220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTAAACATGAAGGGTTGTAAGAATCTTTTGGCATTTCCAGATGATGTGTCTGGATTGAAACGTCTTGAAGTACTTATCCTATCTGATTGCTCAAGTCTAACAAAATTACCAGAGGACTTAGGTGGCTGGAAATCCTTGAGAGAGCTTCTTCTTGATGGTACCGCAATAACAGAGCTACCTAACTCTATCTTCCGCCTGAAGAATCTTCAGATGTTGAATTTAAATGATTGCTGGTCTTTGAAGTTGTTGCCTACAGCTATCGGGAATCTAAGTTCGCTGAGCTCTCTATCTCTTAGTGGATCAGCTTTAAAGGAATTGCCTGATTCAATTGGAAATTTGAAAGATCTTGAGGAATTAAGTTTGAGAATGTGCAAGGGACTCATCTCACTTCCTGATTCCCTCGGAAATCTTAGATCATTAATACGACTTTATCTTGACAACAGCTCCATAAAAGAATTGCCACCTTCTGTTGGTTCATTATCTCAATTGAAGTTCCTTTCACTCAGCAATTGCAAGTCCTTTAGTGAGTTGCCCAATTTCAAGAATAGCTTCTCGTCATTGATTAGGCTTTGTCTACAAGGGACCTCAGTTAGTGAACAAAGTTTCCAGTTAGGAAGCTTCGAGTCCCTTGAGATTCTTGAGCTGGGGTACTGCACTTCAATCAGATCTTTATCTAGCTCAATTGGAAAGATGTCATGTTTAACTACTTTGGACCTACATAATACATCAATTTCTGAGTTGCCAGACGAGATATGTTTATTGGAAAAACTTTGGGAGCTGAACCTGAACAACTGTTTGA</genome_strand>
        <mrna_strand>CTTCTAAACATGAAGGGTTGTAAGAATCTTTTGGCATTTCCAGATGATGTGTCTGGATTGAAACGTCTTGAAGTACTTATCCTATCTGATTGCTCAAGTCTAACAAAATTACCAGAGGACTTAGGTGGCTGGAAATCCTTGAGAGAGCTTCTTCTTGATGGTACCGCAATAACAGAGCTACCTAACTCTATCTTCCGCCTGAAGAATCTTCAGATGTTGAATTTAAATGATTGCTGGTCTTTGAAGTTGTTGCCTACAGCTATCGGGAATCTAAGTTCGCTGAGCTCTCTATCTCTTAGTGGATCAGCTTTAAAGGAATTGCCTGATTCAATTGGAAATTTGAAAGATCTTGAGGAATTAAGTTTGAGAATGTGCAAGGGACTCATCTCACTTCCTGATTCCCTCGGAAATCTTAGATCATTAATACGACTTTATCTTGACAACAGCTCCATAAAAGAATTGCCACCTTCTGTTGGTTCATTATCTCAATTGAAGTTCCTTTCACTCAGCAATTGCAAGTCCTTTAGTGAGTTGCCCAATTTCAAGAATAGCTTCTCGTCATTGATTAGGCTTTGTCTACAAGGGACCTCAGTTAGTGAACAAAGTTTCCAGTTAGGAAGCTTCGAGTCCCTTGAGATTCTTGAGCTGGGGTACTGCACTTCAATCAGATCTTTATCTAGCTCAATTGGAAAGATGTCATGTTTAACTACTTTGGACCTACATAATACATCAATTTCTGAGTTGCCAGACGAGATATGTTTATTGGAAAAACTTTGGGAGCTGAACCTGAACAACTGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E582670" ref_strand="+" ref_description="SGN-E582670 [8303]">
      <seq>ctggattgaagcgtcttgaagtacttatcctatctggttgctcaagtctaacagaattaccagaggacttgagtggctggaaatccttgagagagcttcttctagatggtacctcaataacaaaactacctaactctatcttccgcctaaagaatcttcagatgttgaatttaaatgattgctggtctttgaagttgctgcctacagctgttgggaatctaagttcgctgggctctctctctcttagtggatcagctttaaaggaactgcctgattccattggaaatttgaaaaatcttgaggaattaagtttgagaatgtgcaagggactcatctcacttcctgattccctcggaaatcttagatcattaataggactttatcttgacaacagctccataaaagaattgccgccttccgttggttcattatctcaattgaagttcctttcactcagcaattgcaagtcctttagtgaattgcccaattccaagaatagcttctcgtcattggttaggctttgtctacaagggaccttagttagtgaacaaagtttccagttaggaagtgtcgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C05HBa0115F01-w1PQQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C05HBa0115F01.1" temp_strand="+" temp_description="C05HBa0115F01.1  AC239565.1 htgs_phase:3 submitted_to_sgn_as:C05HBa0115F01 sequenced_by:iitg upload_account_name:india complete_sequence">
        <position start="118171" stop="119332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118471" g_stop="119047" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C05HBa0115F01.1" gen_strand="+" ref_id="SGN-E582670" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C05HBa0115F01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E582670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118471" e_stop="119047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATTGAAACGTCTTGAAGTACTTATCCTATCTGATTGCTCAAGTCTAACAAAATTACCAGAGGACTTAGGTGGCTGGAAATCCTTGAGAGAGCTTCTTCTTGATGGTACCGCAATAACAGAGCTACCTAACTCTATCTTCCGCCTGAAGAATCTTCAGATGTTGAATTTAAATGATTGCTGGTCTTTGAAGTTGTTGCCTACAGCTATCGGGAATCTAAGTTCGCTGAGCTCTCTATCTCTTAGTGGATCAGCTTTAAAGGAATTGCCTGATTCAATTGGAAATTTGAAAGATCTTGAGGAATTAAGTTTGAGAATGTGCAAGGGACTCATCTCACTTCCTGATTCCCTCGGAAATCTTAGATCATTAATACGACTTTATCTTGACAACAGCTCCATAAAAGAATTGCCACCTTCTGTTGGTTCATTATCTCAATTGAAGTTCCTTTCACTCAGCAATTGCAAGTCCTTTAGTGAGTTGCCCAATTTCAAGAATAGCTTCTCGTCATTGATTAGGCTTTGTCTACAAGGGACCTCAGTTAGTGAACAAAGTTTCCAGTTAGGAAGCTTCGAGTC</genome_strand>
        <mrna_strand>CTGGATTGAAGCGTCTTGAAGTACTTATCCTATCTGGTTGCTCAAGTCTAACAGAATTACCAGAGGACTTGAGTGGCTGGAAATCCTTGAGAGAGCTTCTTCTAGATGGTACCTCAATAACAAAACTACCTAACTCTATCTTCCGCCTAAAGAATCTTCAGATGTTGAATTTAAATGATTGCTGGTCTTTGAAGTTGCTGCCTACAGCTGTTGGGAATCTAAGTTCGCTGGGCTCTCTCTCTCTTAGTGGATCAGCTTTAAAGGAACTGCCTGATTCCATTGGAAATTTGAAAAATCTTGAGGAATTAAGTTTGAGAATGTGCAAGGGACTCATCTCACTTCCTGATTCCCTCGGAAATCTTAGATCATTAATAGGACTTTATCTTGACAACAGCTCCATAAAAGAATTGCCGCCTTCCGTTGGTTCATTATCTCAATTGAAGTTCCTTTCACTCAGCAATTGCAAGTCCTTTAGTGAATTGCCCAATTCCAAGAATAGCTTCTCGTCATTGGTTAGGCTTTGTCTACAAGGGACCTTAGTTAGTGAACAAAGTTTCCAGTTAGGAAGTGTCGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>45</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="13977" PGL_stop="14368"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13977" e_stop="14368"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="13977" e_stop="14368" e_length="392"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13977" stop="14368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438012" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCCACTGTAACCGTCGCCGGCGGTAACATCAACCTTACTCCGGCGATCTACAGTACTGTTCCCGGCCTCACTATTATCTCCTGCCGACGGGATATCTTCCATTTTGCCATCAATGGCGCTACAGAGACAACCTAGTGATCTGAAAAACAGAGTGAATACTTGTCTCAATAGATTGTCCGACCGTGATACTCTCGCCGTTGCTACGAATGAGCTGGAGTCTATAGTTAGAAGTCTTAACAGTGAAGGTTTTAGTGCATTTTTGACTTGTATTTCGAGTACGGACTCTTCCGATAAATCGCCGGTGCGTCGGCAATGTGTTCGGCTTATCGGAGTTCTCTCAGCAACTCACGGAGATGCTTTATCACCGCATCTAGCGAAAATGCTTTCTACT</gDNA_template>
            <first_frame> R  H  C  N  R  R  R  R  *  H  Q  P  Y  S  G  D  L  Q  Y  C  S  R  P  H  Y  Y  L  L  P  T  G  Y  L  P  F  C  H  Q  W  R  Y  R  D  N  L  V  I  *  K  T  E  *  I  L  V  S  I  D  C  P  T  V  I  L  S  P  L  L  R  M  S  W  S  L  *  L  E  V  L  T  V  K  V  L  V  H  F  *  L  V  F  R  V  R  T  L  P  I  N  R  R  C  V  G  N  V  F  G  L  S  E  F  S  Q  Q  L  T  E  M  L  Y  H  R  I  *  R  K  C  F  L   </first_frame>
            <second_frame>  A  T  V  T  V  A  G  G  N  I  N  L  T  P  A  I  Y  S  T  V  P  G  L  T  I  I  S  C  R  R  D  I  F  H  F  A  I  N  G  A  T  E  T  T  *  *  S  E  K  Q  S  E  Y  L  S  Q  *  I  V  R  P  *  Y  S  R  R  C  Y  E  *  A  G  V  Y  S  *  K  S  *  Q  *  R  F  *  C  I  F  D  L  Y  F  E  Y  G  L  F  R  *  I  A  G  A  S  A  M  C  S  A  Y  R  S  S  L  S  N  S  R  R  C  F  I  T  A  S  S  E  N  A  F  Y  </second_frame>
            <third_frame>   P  L  *  P  S  P  A  V  T  S  T  L  L  R  R  S  T  V  L  F  P  A  S  L  L  S  P  A  D  G  I  S  S  I  L  P  S  M  A  L  Q  R  Q  P  S  D  L  K  N  R  V  N  T  C  L  N  R  L  S  D  R  D  T  L  A  V  A  T  N  E  L  E  S  I  V  R  S  L  N  S  E  G  F  S  A  F  L  T  C  I  S  S  T  D  S  S  D  K  S  P  V  R  R  Q  C  V  R  L  I  G  V  L  S  A  T  H  G  D  A  L  S  P  H  L  A  K  M  L  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13988" stop="14368"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPAVTSTLLRRSTVLFPASLLSPADGISSILPSMALQRQPSDLKNRVNTCLNRLSDRDTLAVATNELESIVRSLNSEGFSAFLTCISSTDSSDKSPVRRQCVRLIGVLSATHGDALSPHLAKMLST</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="14517" PGL_stop="16253"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14517" e_stop="14878"/>
            <exon e_start="15072" e_stop="15180"/>
            <exon e_start="16129" e_stop="16253"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="0.961"/>
          <exon-intron don_prob="0.993" acc_prob="0.935" e_score="0.963"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="14517" e_stop="14878" e_length="362"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="14879" i_stop="15071" i_length="193"/>
          </intron>
          <exon e_serial="2" e_score="0.963">
            <gDNA_exon_boundary e_start="15072" e_stop="15180" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.935">
            <gDNA_intron_boundary i_start="15181" i_stop="16128" i_length="948"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="16129" e_stop="16253" e_length="125"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14517" stop="14878"/>
              <exon start="15072" stop="15180"/>
              <exon start="16129" stop="16253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456583" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCGCAGATCGGAGCTTCGCTTTGCCTTGCTGCGGCAATTGAAGCATCACCTGATCCTGAGCCGGCGGAGCTGAAGAAAATACTGTCGAAGCTCATGAAATTGGTGAAGAATGATAGCTTCAAAGCCAAACCGGCCTTGCTGTCGCTCATTGGTAGTATTGTTAGTGTTGGTGGTGCTTCAAATAAGAATGTATTGAATAGCTTGGTTCCGATTACGGCTGAGTTGTTGAGTAGTGAAGATTGGACTGTGCGGAAGGCCGCGGCGGAGACATTGGGACGGTTGGCTGTTTCCGAGAAAGAATTGTTGTCAGAGTTGAAGGCGTTCTGCATCACGTCATTGGATAACCGAAGATTCGATAAG : GTGAAGGTTGTTAGAGAGACAATGAATCGGGCGTTAGAATGGTGGAAGGAAGTTCCAGGTACTTCAGATGATGTTTTGCCTCAATTACAATCCAAGTTTCCACATAAAG : ATTGTATTAGTGGTGCCTGTTCTCCAACTCCTTCCAAAAGTTCGAGTGATACAGCTATGGAAACCCCTCAGCCGAAGAAAGCAATCCGCTCAACTAAGTCACTTGCATCCAGTAGTTCTTCCTCG</gDNA_template>
            <first_frame> I  R  R  S  E  L  R  F  A  L  L  R  Q  L  K  H  H  L  I  L  S  R  R  S  *  R  K  Y  C  R  S  S  *  N  W  *  R  M  I  A  S  K  P  N  R  P  C  C  R  S  L  V  V  L  L  V  L  V  V  L  Q  I  R  M  Y  *  I  A  W  F  R  L  R  L  S  C  *  V  V  K  I  G  L  C  G  R  P  R  R  R  H  W  D  G  W  L  F  P  R  K  N  C  C  Q  S  *  R  R  S  A  S  R  H  W  I  T  E  D  S  I  R :   *  R  L  L  E  R  Q  *  I  G  R  *  N  G  G  R  K  F  Q  V  L  Q  M  M  F  C  L  N  Y  N  P  S  F  H  I  K  :  I  V  L  V  V  P  V  L  Q  L  L  P  K  V  R  V  I  Q  L  W  K  P  L  S  R  R  K  Q  S  A  Q  L  S  H  L  H  P  V  V  L  P   </first_frame>
            <second_frame>  F  A  D  R  S  F  A  L  P  C  C  G  N  *  S  I  T  *  S  *  A  G  G  A  E  E  N  T  V  E  A  H  E  I  G  E  E  *  *  L  Q  S  Q  T  G  L  A  V  A  H  W  *  Y  C  *  C  W  W  C  F  K  *  E  C  I  E  *  L  G  S  D  Y  G  *  V  V  E  *  *  R  L  D  C  A  E  G  R  G  G  D  I  G  T  V  G  C  F  R  E  R  I  V  V  R  V  E  G  V  L  H  H  V  I  G  *  P  K  I  R  *   : G  E  G  C  *  R  D  N  E  S  G  V  R  M  V  E  G  S  S  R  Y  F  R  *  C  F  A  S  I  T  I  Q  V  S  T  *  R :   L  Y  *  W  C  L  F  S  N  S  F  Q  K  F  E  *  Y  S  Y  G  N  P  S  A  E  E  S  N  P  L  N  *  V  T  C  I  Q  *  F  F  L  </second_frame>
            <third_frame>   S  Q  I  G  A  S  L  C  L  A  A  A  I  E  A  S  P  D  P  E  P  A  E  L  K  K  I  L  S  K  L  M  K  L  V  K  N  D  S  F  K  A  K  P  A  L  L  S  L  I  G  S  I  V  S  V  G  G  A  S  N  K  N  V  L  N  S  L  V  P  I  T  A  E  L  L  S  S  E  D  W  T  V  R  K  A  A  A  E  T  L  G  R  L  A  V  S  E  K  E  L  L  S  E  L  K  A  F  C  I  T  S  L  D  N  R  R  F  D  K  :  V  K  V  V  R  E  T  M  N  R  A  L  E  W  W  K  E  V  P  G  T  S  D  D  V  L  P  Q  L  Q  S  K  F  P  H  K   : D  C  I  S  G  A  C  S  P  T  P  S  K  S  S  S  D  T  A  M  E  T  P  Q  P  K  K  A  I  R  S  T  K  S  L  A  S  S  S  S  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14519" stop="14878"/>
                    <exon start="15072" stop="15180"/>
                    <exon start="16129" stop="16253"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQIGASLCLAAAIEASPDPEPAELKKILSKLMKLVKNDSFKAKPALLSLIGSIVSVGGASNKNVLNSLVPITAELLSSEDWTVRKAAAETLGRLAVSEKELLSELKAFCITSLDNRRFDKVKVVRETMNRALEWWKEVPGTSDDVLPQLQSKFPHKDCISGACSPTPSKSSSDTAMETPQPKKAIRSTKSLASSSSSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="16295" PGL_stop="17989"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16295" e_stop="16712"/>
            <exon e_start="16880" e_stop="17345"/>
            <exon e_start="17684" e_stop="17989"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16295" e_stop="16712" e_length="418"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="16713" i_stop="16879" i_length="167"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16880" e_stop="17345" e_length="466"/>
          </exon>
          <intron i_serial="2" don_prob="0.902" acc_prob="0.987">
            <gDNA_intron_boundary i_start="17346" i_stop="17683" i_length="338"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="17684" e_stop="17989" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16295" stop="16712"/>
              <exon start="16880" stop="17154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16311" stop="16712"/>
              <exon start="16880" stop="17004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16438" stop="16712"/>
              <exon start="16880" stop="17034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17019" stop="17345"/>
              <exon start="17684" stop="17989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATCAAATGTTACGAGCTCCTGTAAGCTGGATTTTAGAAAATCCCCTGATGCAAAAGCAAAGCACACTGTTTCACAGGCTTCTTCGTTGGAGGTAGCTTGTGAAGAACAGAAGAGTCAAAATTTTAGAGTTCAAGGTTCAGTGGATTCAGTGAGTTGTAGCAGTTCAAACTCAGAAGCAAAGTCAACTCTATTCAACAGACCACCGGATGAGAAGTTCCACAGATATGGTAATTCACAGTTTGGATCTCGGGTTATTCCACTCTTTGAGGACTACAATGACAACATGGATGTACCTGCTGAGGACATCAACGAAGATGCATTCTTGAGTCATAGAGAGTACGAGAATTTCTGTTCTGTCAGCAAACAGCTTGTTCAGATTGAAAATCAACAGTCCAGTTTGTTAGACCTCCTGCAG : GGATTTATTGGCAGCTCACGACATGGAATGAATTCCTTAGAGAAACGTGTAAATGGTTTGGAGAGATTACTTGATGAAATGCAATATGATTTGGCAATAACAACAGGGAGGATTTCAGATACTGATTTTACAGGAAGTACATGCAGCATGATCCCTCGTGCAGAATTTTTGGGTCCTAAGTTTTGGAGAAGTCCAGAAGGGCAAAACTCACAATCAAGAATATCCTTCTCAACTGGAAGCCAGGATGTAGCGTATAGTCCATCAGAAACTGATGCTACCAAGCAGAACAAGAATATATCTTCAGCAAAGCAGTTTAGTATCACTCCGGGTGAAGCATTACGTTCTTTCTCCAGTCGAAGAAAAGAGAGAATAGCTCGAGATGGTGAAACTGCAGGGTTTTGTCATGTCAGTAGGCTTAATGGAACGTCATTCACAAATTGCATACAGCAGCAAACTTGAGCCTTAG : GTTGTGCGGACAAGAAAATACTTTAGTCTCAGTGCTGAAATATTTGAATAGTCTTTGTACTTGAAAAGAAACAAAGCTGTTTGCTGTGAAGAGAAATCAGAGACCAAGATAAGTTTTCAATATCTATACCTGGTCATGAGGACAAGAAATGAGGGTGTCTGTACAGAAGTTGTCAATGTTAAGTCCTGTTTATGCAAATGTTATTCTGTTTTCTGATTCTAGTGATCCAATGATTGTTCTGTGAAGATGAAATGATATTCTTCCAAAGGGGAGAAAGTGCAAATATTAGTCAAATTGAGGAGTTTA</gDNA_template>
            <first_frame> K  I  K  C  Y  E  L  L  *  A  G  F  *  K  I  P  *  C  K  S  K  A  H  C  F  T  G  F  F  V  G  G  S  L  *  R  T  E  E  S  K  F  *  S  S  R  F  S  G  F  S  E  L  *  Q  F  K  L  R  S  K  V  N  S  I  Q  Q  T  T  G  *  E  V  P  Q  I  W  *  F  T  V  W  I  S  G  Y  S  T  L  *  G  L  Q  *  Q  H  G  C  T  C  *  G  H  Q  R  R  C  I  L  E  S  *  R  V  R  E  F  L  F  C  Q  Q  T  A  C  S  D  *  K  S  T  V  Q  F  V  R  P  P  A   : G  I  Y  W  Q  L  T  T  W  N  E  F  L  R  E  T  C  K  W  F  G  E  I  T  *  *  N  A  I  *  F  G  N  N  N  R  E  D  F  R  Y  *  F  Y  R  K  Y  M  Q  H  D  P  S  C  R  I  F  G  S  *  V  L  E  K  S  R  R  A  K  L  T  I  K  N  I  L  L  N  W  K  P  G  C  S  V  *  S  I  R  N  *  C  Y  Q  A  E  Q  E  Y  I  F  S  K  A  V  *  Y  H  S  G  *  S  I  T  F  F  L  Q  S  K  K  R  E  N  S  S  R  W  *  N  C  R  V  L  S  C  Q  *  A  *  W  N  V  I  H  K  L  H  T  A  A  N  L  S  L  R :   L  C  G  Q  E  N  T  L  V  S  V  L  K  Y  L  N  S  L  C  T  *  K  E  T  K  L  F  A  V  K  R  N  Q  R  P  R  *  V  F  N  I  Y  T  W  S  *  G  Q  E  M  R  V  S  V  Q  K  L  S  M  L  S  P  V  Y  A  N  V  I  L  F  S  D  S  S  D  P  M  I  V  L  *  R  *  N  D  I  L  P  K  G  R  K  C  K  Y  *  S  N  *  G  V   </first_frame>
            <second_frame>  K  S  N  V  T  S  S  C  K  L  D  F  R  K  S  P  D  A  K  A  K  H  T  V  S  Q  A  S  S  L  E  V  A  C  E  E  Q  K  S  Q  N  F  R  V  Q  G  S  V  D  S  V  S  C  S  S  S  N  S  E  A  K  S  T  L  F  N  R  P  P  D  E  K  F  H  R  Y  G  N  S  Q  F  G  S  R  V  I  P  L  F  E  D  Y  N  D  N  M  D  V  P  A  E  D  I  N  E  D  A  F  L  S  H  R  E  Y  E  N  F  C  S  V  S  K  Q  L  V  Q  I  E  N  Q  Q  S  S  L  L  D  L  L  Q  :  G  F  I  G  S  S  R  H  G  M  N  S  L  E  K  R  V  N  G  L  E  R  L  L  D  E  M  Q  Y  D  L  A  I  T  T  G  R  I  S  D  T  D  F  T  G  S  T  C  S  M  I  P  R  A  E  F  L  G  P  K  F  W  R  S  P  E  G  Q  N  S  Q  S  R  I  S  F  S  T  G  S  Q  D  V  A  Y  S  P  S  E  T  D  A  T  K  Q  N  K  N  I  S  S  A  K  Q  F  S  I  T  P  G  E  A  L  R  S  F  S  S  R  R  K  E  R  I  A  R  D  G  E  T  A  G  F  C  H  V  S  R  L  N  G  T  S  F  T  N  C  I  Q  Q  Q  T  *  A  L   : G  C  A  D  K  K  I  L  *  S  Q  C  *  N  I  *  I  V  F  V  L  E  K  K  Q  S  C  L  L  *  R  E  I  R  D  Q  D  K  F  S  I  S  I  P  G  H  E  D  K  K  *  G  C  L  Y  R  S  C  Q  C  *  V  L  F  M  Q  M  L  F  C  F  L  I  L  V  I  Q  *  L  F  C  E  D  E  M  I  F  F  Q  R  G  E  S  A  N  I  S  Q  I  E  E  F  </second_frame>
            <third_frame>   N  Q  M  L  R  A  P  V  S  W  I  L  E  N  P  L  M  Q  K  Q  S  T  L  F  H  R  L  L  R  W  R  *  L  V  K  N  R  R  V  K  I  L  E  F  K  V  Q  W  I  Q  *  V  V  A  V  Q  T  Q  K  Q  S  Q  L  Y  S  T  D  H  R  M  R  S  S  T  D  M  V  I  H  S  L  D  L  G  L  F  H  S  L  R  T  T  M  T  T  W  M  Y  L  L  R  T  S  T  K  M  H  S  *  V  I  E  S  T  R  I  S  V  L  S  A  N  S  L  F  R  L  K  I  N  S  P  V  C  *  T  S  C  R :   D  L  L  A  A  H  D  M  E  *  I  P  *  R  N  V  *  M  V  W  R  D  Y  L  M  K  C  N  M  I  W  Q  *  Q  Q  G  G  F  Q  I  L  I  L  Q  E  V  H  A  A  *  S  L  V  Q  N  F  W  V  L  S  F  G  E  V  Q  K  G  K  T  H  N  Q  E  Y  P  S  Q  L  E  A  R  M  *  R  I  V  H  Q  K  L  M  L  P  S  R  T  R  I  Y  L  Q  Q  S  S  L  V  S  L  R  V  K  H  Y  V  L  S  P  V  E  E  K  R  E  *  L  E  M  V  K  L  Q  G  F  V  M  S  V  G  L  M  E  R  H  S  Q  I  A  Y  S  S  K  L  E  P  *  :  V  V  R  T  R  K  Y  F  S  L  S  A  E  I  F  E  *  S  L  Y  L  K  R  N  K  A  V  C  C  E  E  K  S  E  T  K  I  S  F  Q  Y  L  Y  L  V  M  R  T  R  N  E  G  V  C  T  E  V  V  N  V  K  S  C  L  C  K  C  Y  S  V  F  *  F  *  *  S  N  D  C  S  V  K  M  K  *  Y  S  S  K  G  E  K  V  Q  I  L  V  K  L  R  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16296" stop="16712"/>
                    <exon start="16880" stop="17338"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSNVTSSCKLDFRKSPDAKAKHTVSQASSLEVACEEQKSQNFRVQGSVDSVSCSSSNSEAKSTLFNRPPDEKFHRYGNSQFGSRVIPLFEDYNDNMDVPAEDINEDAFLSHREYENFCSVSKQLVQIENQQSSLLDLLQGFIGSSRHGMNSLEKRVNGLERLLDEMQYDLAITTGRISDTDFTGSTCSMIPRAEFLGPKFWRSPEGQNSQSRISFSTGSQDVAYSPSETDATKQNKNISSAKQFSITPGEALRSFSSRRKERIARDGETAGFCHVSRLNGTSFTNCIQQQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="25517" PGL_stop="26632"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25517" e_stop="26632"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="25517" e_stop="26632" e_length="1116"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25517" stop="26403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25922" stop="26489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26100" stop="26632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26100" stop="26577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGAGGGATGTTGAAAACGGGAAGTATGATCTTTGTGTGTGTACTATGGTGTGGAATCAAGGTTCAGCGCTTCGTGAATGGATTACATATCATTCTTGGCTTGGAGTTGAGAGGTGGTTTATCTACGACAATAATAGCGATGACAATATCAAGGATGTGATTGAAGAGCTTGAGATTGAGAATTACAATGTTACACGACATGTTTGGCCGTGGATCAAGACTCAAGAAGCAGGCTTTTCGCATTGTGCTCTTAGAGCGAAGAAAGAATGTAATTGGGTATCGTTCATGGATGTGGATGAGTATTTCTACTTTCCGTATTCTACTCCAGGGCATCAATGTTTGAGAAGCTCAGGTTACGCGGGACAGGATTCCCTTCGATCCCTCGTGGCAAATGTATCATCATCTTCACCAGGAATTGCGGAGATTAGAACAACTTGCCATAGTTTTGGACCGTCTGGTCTGAATTCAGCTCCTTCTCAGGGTATCACTGTTGGATATACTTGTCGTCTTAAGAGTCCCGAGAGACACAAATCAATCATACGTCCCGATGCTTTGGACACCACTCTCCTCAATGTGGTGCATCATTTCCACTTGAGGAAAGGATTTAGCTACATGAATTTGCCACAAAGTACTGCAGTGATAAACCACTACAAATACCAAGTGTGGGAGGTATTCAGGGCGAAATTTTTCAGACGAGTAGCTACATATGTCGTCGATTGGCAGAACAATCAAAATGAAGGATCAAGGGATAGAGCACCTGGTTTAGGGACAGAGGCCATTGAGCCACCAAATTGGCCATTACAATTCTGTGAAGTTTGGGATACCGGCCTTCGAGACTTTGTTTTGTCAAACTTTGCTGATTTATCAACTGGTTTGTTGCCTTGGGAGAAGTCTTCTTTCTAATCACTGAGTCCCGATAACTATCGTAGAGAAAGGAAGTCTAGAAGCCAGGGCTTTGTTCACCTTTGGACACGAGCACTATTCCATTCTCGGGAGAAATCCGTCTTGGAGATTGAACAACAATAAGATGAGTCAACGTTCAATCTAAGCTAGGGAGCTTGAACAAAGGCTCAAAGCCAATCCCACGGAATAGTAAAGCTTCACAGGGTCTTTCT</gDNA_template>
            <first_frame> K  E  G  C  *  K  R  E  V  *  S  L  C  V  Y  Y  G  V  E  S  R  F  S  A  S  *  M  D  Y  I  S  F  L  A  W  S  *  E  V  V  Y  L  R  Q  *  *  R  *  Q  Y  Q  G  C  D  *  R  A  *  D  *  E  L  Q  C  Y  T  T  C  L  A  V  D  Q  D  S  R  S  R  L  F  A  L  C  S  *  S  E  E  R  M  *  L  G  I  V  H  G  C  G  *  V  F  L  L  S  V  F  Y  S  R  A  S  M  F  E  K  L  R  L  R  G  T  G  F  P  S  I  P  R  G  K  C  I  I  I  F  T  R  N  C  G  D  *  N  N  L  P  *  F  W  T  V  W  S  E  F  S  S  F  S  G  Y  H  C  W  I  Y  L  S  S  *  E  S  R  E  T  Q  I  N  H  T  S  R  C  F  G  H  H  S  P  Q  C  G  A  S  F  P  L  E  E  R  I  *  L  H  E  F  A  T  K  Y  C  S  D  K  P  L  Q  I  P  S  V  G  G  I  Q  G  E  I  F  Q  T  S  S  Y  I  C  R  R  L  A  E  Q  S  K  *  R  I  K  G  *  S  T  W  F  R  D  R  G  H  *  A  T  K  L  A  I  T  I  L  *  S  L  G  Y  R  P  S  R  L  C  F  V  K  L  C  *  F  I  N  W  F  V  A  L  G  E  V  F  F  L  I  T  E  S  R  *  L  S  *  R  K  E  V  *  K  P  G  L  C  S  P  L  D  T  S  T  I  P  F  S  G  E  I  R  L  G  D  *  T  T  I  R  *  V  N  V  Q  S  K  L  G  S  L  N  K  G  S  K  P  I  P  R  N  S  K  A  S  Q  G  L  S </first_frame>
            <second_frame>  R  R  D  V  E  N  G  K  Y  D  L  C  V  C  T  M  V  W  N  Q  G  S  A  L  R  E  W  I  T  Y  H  S  W  L  G  V  E  R  W  F  I  Y  D  N  N  S  D  D  N  I  K  D  V  I  E  E  L  E  I  E  N  Y  N  V  T  R  H  V  W  P  W  I  K  T  Q  E  A  G  F  S  H  C  A  L  R  A  K  K  E  C  N  W  V  S  F  M  D  V  D  E  Y  F  Y  F  P  Y  S  T  P  G  H  Q  C  L  R  S  S  G  Y  A  G  Q  D  S  L  R  S  L  V  A  N  V  S  S  S  S  P  G  I  A  E  I  R  T  T  C  H  S  F  G  P  S  G  L  N  S  A  P  S  Q  G  I  T  V  G  Y  T  C  R  L  K  S  P  E  R  H  K  S  I  I  R  P  D  A  L  D  T  T  L  L  N  V  V  H  H  F  H  L  R  K  G  F  S  Y  M  N  L  P  Q  S  T  A  V  I  N  H  Y  K  Y  Q  V  W  E  V  F  R  A  K  F  F  R  R  V  A  T  Y  V  V  D  W  Q  N  N  Q  N  E  G  S  R  D  R  A  P  G  L  G  T  E  A  I  E  P  P  N  W  P  L  Q  F  C  E  V  W  D  T  G  L  R  D  F  V  L  S  N  F  A  D  L  S  T  G  L  L  P  W  E  K  S  S  F  *  S  L  S  P  D  N  Y  R  R  E  R  K  S  R  S  Q  G  F  V  H  L  W  T  R  A  L  F  H  S  R  E  K  S  V  L  E  I  E  Q  Q  *  D  E  S  T  F  N  L  S  *  G  A  *  T  K  A  Q  S  Q  S  H  G  I  V  K  L  H  R  V  F   </second_frame>
            <third_frame>   G  G  M  L  K  T  G  S  M  I  F  V  C  V  L  W  C  G  I  K  V  Q  R  F  V  N  G  L  H  I  I  L  G  L  E  L  R  G  G  L  S  T  T  I  I  A  M  T  I  S  R  M  *  L  K  S  L  R  L  R  I  T  M  L  H  D  M  F  G  R  G  S  R  L  K  K  Q  A  F  R  I  V  L  L  E  R  R  K  N  V  I  G  Y  R  S  W  M  W  M  S  I  S  T  F  R  I  L  L  Q  G  I  N  V  *  E  A  Q  V  T  R  D  R  I  P  F  D  P  S  W  Q  M  Y  H  H  L  H  Q  E  L  R  R  L  E  Q  L  A  I  V  L  D  R  L  V  *  I  Q  L  L  L  R  V  S  L  L  D  I  L  V  V  L  R  V  P  R  D  T  N  Q  S  Y  V  P  M  L  W  T  P  L  S  S  M  W  C  I  I  S  T  *  G  K  D  L  A  T  *  I  C  H  K  V  L  Q  *  *  T  T  T  N  T  K  C  G  R  Y  S  G  R  N  F  S  D  E  *  L  H  M  S  S  I  G  R  T  I  K  M  K  D  Q  G  I  E  H  L  V  *  G  Q  R  P  L  S  H  Q  I  G  H  Y  N  S  V  K  F  G  I  P  A  F  E  T  L  F  C  Q  T  L  L  I  Y  Q  L  V  C  C  L  G  R  S  L  L  S  N  H  *  V  P  I  T  I  V  E  K  G  S  L  E  A  R  A  L  F  T  F  G  H  E  H  Y  S  I  L  G  R  N  P  S  W  R  L  N  N  N  K  M  S  Q  R  S  I  *  A  R  E  L  E  Q  R  L  K  A  N  P  T  E  *  *  S  F  T  G  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25518" stop="26420"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRDVENGKYDLCVCTMVWNQGSALREWITYHSWLGVERWFIYDNNSDDNIKDVIEELEIENYNVTRHVWPWIKTQEAGFSHCALRAKKECNWVSFMDVDEYFYFPYSTPGHQCLRSSGYAGQDSLRSLVANVSSSSPGIAEIRTTCHSFGPSGLNSAPSQGITVGYTCRLKSPERHKSIIRPDALDTTLLNVVHHFHLRKGFSYMNLPQSTAVINHYKYQVWEVFRAKFFRRVATYVVDWQNNQNEGSRDRAPGLGTEAIEPPNWPLQFCEVWDTGLRDFVLSNFADLSTGLLPWEKSSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="36386" PGL_stop="37178"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36386" e_stop="37178"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="36386" e_stop="37178" e_length="793"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36386" stop="36961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36431" stop="37178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36431" stop="37118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTGCTCTGTTCTTCTTCCTAATCTCTTCTCATTCCACTTCTCTACACTCAACCAATCCACAATGACAGCAAAATCAACTAACCCCATCTTCTTCTTCACTCTGTTCTTCCTCATTTTCACATTAACCCCATCTTTTTCCATTGAGAATGATGTTAAATGTCTTGAAGGTATCAAATCTGCATTTTCTGACCCTTTAAACAAGCTCTCATCTTGGTCATTCTCAAATACTTCTGTAGCTTCAATTTGTAAACTTGTTGGTGTTTCTTGCTGGAATGAGAAAGAAAATCGCCTTCTTTCTCTTCAACTTCCTTCAATGTCTTTATCTGGTTCACTCCCATCTTCCCTTCAGTTCTGTTCTTCTCTTCAATCTCTTGATCTCTCTGGTAACTCTTTTTCCGGTCCAATCCCAGTTCAAATCTGCTCATGGTTACCTTATCTCGTCAATCTCGATCTCTCCAGCAACTATTTCTCCGGTTCCATACCCCCTGAGTTCATCAACTGCAAATTCCTAAACACCCTTCTGCTAAATGACAACAAACTCACTGGGTCAATCCCATTTGAGATCGGCAGGCTCGACCGGTTGAAACGGTTCAGTGCATCCAACAATGGCCTTTCCGGTTCAATTCCTGATGATTTAGACCGGTTTTCGAAAGATGATTTTGATGGGAATGACGGGCTTTGTGGGAATCCAATTGGATCTAAATGTAGTAACTTGAGTAACAAAAATCTTGTTATTATTATATCTGCAGGTGTTTTTGGTGCTGCTGCATCACTGATTCTTGGATTTGGG</gDNA_template>
            <first_frame> F  L  L  C  S  S  S  *  S  L  L  I  P  L  L  Y  T  Q  P  I  H  N  D  S  K  I  N  *  P  H  L  L  L  H  S  V  L  P  H  F  H  I  N  P  I  F  F  H  *  E  *  C  *  M  S  *  R  Y  Q  I  C  I  F  *  P  F  K  Q  A  L  I  L  V  I  L  K  Y  F  C  S  F  N  L  *  T  C  W  C  F  L  L  E  *  E  R  K  S  P  S  F  S  S  T  S  F  N  V  F  I  W  F  T  P  I  F  P  S  V  L  F  F  S  S  I  S  *  S  L  W  *  L  F  F  R  S  N  P  S  S  N  L  L  M  V  T  L  S  R  Q  S  R  S  L  Q  Q  L  F  L  R  F  H  T  P  *  V  H  Q  L  Q  I  P  K  H  P  S  A  K  *  Q  Q  T  H  W  V  N  P  I  *  D  R  Q  A  R  P  V  E  T  V  Q  C  I  Q  Q  W  P  F  R  F  N  S  *  *  F  R  P  V  F  E  R  *  F  *  W  E  *  R  A  L  W  E  S  N  W  I  *  M  *  *  L  E  *  Q  K  S  C  Y  Y  Y  I  C  R  C  F  W  C  C  C  I  T  D  S  W  I  W  </first_frame>
            <second_frame>  F  C  S  V  L  L  P  N  L  F  S  F  H  F  S  T  L  N  Q  S  T  M  T  A  K  S  T  N  P  I  F  F  F  T  L  F  F  L  I  F  T  L  T  P  S  F  S  I  E  N  D  V  K  C  L  E  G  I  K  S  A  F  S  D  P  L  N  K  L  S  S  W  S  F  S  N  T  S  V  A  S  I  C  K  L  V  G  V  S  C  W  N  E  K  E  N  R  L  L  S  L  Q  L  P  S  M  S  L  S  G  S  L  P  S  S  L  Q  F  C  S  S  L  Q  S  L  D  L  S  G  N  S  F  S  G  P  I  P  V  Q  I  C  S  W  L  P  Y  L  V  N  L  D  L  S  S  N  Y  F  S  G  S  I  P  P  E  F  I  N  C  K  F  L  N  T  L  L  L  N  D  N  K  L  T  G  S  I  P  F  E  I  G  R  L  D  R  L  K  R  F  S  A  S  N  N  G  L  S  G  S  I  P  D  D  L  D  R  F  S  K  D  D  F  D  G  N  D  G  L  C  G  N  P  I  G  S  K  C  S  N  L  S  N  K  N  L  V  I  I  I  S  A  G  V  F  G  A  A  A  S  L  I  L  G  F  G </second_frame>
            <third_frame>   F  A  L  F  F  F  L  I  S  S  H  S  T  S  L  H  S  T  N  P  Q  *  Q  Q  N  Q  L  T  P  S  S  S  S  L  C  S  S  S  F  S  H  *  P  H  L  F  P  L  R  M  M  L  N  V  L  K  V  S  N  L  H  F  L  T  L  *  T  S  S  H  L  G  H  S  Q  I  L  L  *  L  Q  F  V  N  L  L  V  F  L  A  G  M  R  K  K  I  A  F  F  L  F  N  F  L  Q  C  L  Y  L  V  H  S  H  L  P  F  S  S  V  L  L  F  N  L  L  I  S  L  V  T  L  F  P  V  Q  S  Q  F  K  S  A  H  G  Y  L  I  S  S  I  S  I  S  P  A  T  I  S  P  V  P  Y  P  L  S  S  S  T  A  N  S  *  T  P  F  C  *  M  T  T  N  S  L  G  Q  S  H  L  R  S  A  G  S  T  G  *  N  G  S  V  H  P  T  M  A  F  P  V  Q  F  L  M  I  *  T  G  F  R  K  M  I  L  M  G  M  T  G  F  V  G  I  Q  L  D  L  N  V  V  T  *  V  T  K  I  L  L  L  L  Y  L  Q  V  F  L  V  L  L  H  H  *  F  L  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36387" stop="37178"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCSVLLPNLFSFHFSTLNQSTMTAKSTNPIFFFTLFFLIFTLTPSFSIENDVKCLEGIKSAFSDPLNKLSSWSFSNTSVASICKLVGVSCWNEKENRLLSLQLPSMSLSGSLPSSLQFCSSLQSLDLSGNSFSGPIPVQICSWLPYLVNLDLSSNYFSGSIPPEFINCKFLNTLLLNDNKLTGSIPFEIGRLDRLKRFSASNNGLSGSIPDDLDRFSKDDFDGNDGLCGNPIGSKCSNLSNKNLVIIISAGVFGAAASLILGFG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="38423" PGL_stop="37775"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38423" e_stop="37775"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="38423" e_stop="37775" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38423" stop="37775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425004" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTCTAAAAATGTGTCAAGAAAGTACAAAGATCATGCATTTGCTTCTCAAACTATACAAATTTTTATCAAGAAACACAAATGCCATAACTAGAATATTCAAAATTCATGAGCATTTATCTAGTCATTTCAATGCTATAACCTAATCTTTATGATCATGATTTTCCTTGGTCAAGTTGATTGGAAACTCATCAAAGTGTTCAGAGAAACAATGATCTTTCACCATACTCTTCAAGGACTGATACACTGTGTACATCGAAGGTCTATCTTTCGGCCTTGAAACCACACACAAACATGCAATTTGAAGAACTCGTAAAATTTCATCATCTCGACCACTTCCAGCAAAAGATTTATCAATCGCGTCCTTACTATGTCCTGAGCTCGAAAGCTGATTAACCCAATCGACTAAACTACCTTTGAATCCCTCCTCCGCACCAACAGGCTTCCGCCCTGTCACCAACTCAAGTAGCACTACTCCAAAACTATACACATCCCCTTTCATTGAAGCAACCAACGTGCTCGAATACTCAGGAGGCACATAACCAAACTCTCCCAAATCCCCATTCACAAACAAGCTATCATTCGAGTCAGTAGAACCAATAAGCCTTGCAAGCCCAAAATCCGTGATCCTAGCATCATAATCATCGTCT</gDNA_template>
            <first_frame> L  S  K  N  V  S  R  K  Y  K  D  H  A  F  A  S  Q  T  I  Q  I  F  I  K  K  H  K  C  H  N  *  N  I  Q  N  S  *  A  F  I  *  S  F  Q  C  Y  N  L  I  F  M  I  M  I  F  L  G  Q  V  D  W  K  L  I  K  V  F  R  E  T  M  I  F  H  H  T  L  Q  G  L  I  H  C  V  H  R  R  S  I  F  R  P  *  N  H  T  Q  T  C  N  L  K  N  S  *  N  F  I  I  S  T  T  S  S  K  R  F  I  N  R  V  L  T  M  S  *  A  R  K  L  I  N  P  I  D  *  T  T  F  E  S  L  L  R  T  N  R  L  P  P  C  H  Q  L  K  *  H  Y  S  K  T  I  H  I  P  F  H  *  S  N  Q  R  A  R  I  L  R  R  H  I  T  K  L  S  Q  I  P  I  H  K  Q  A  I  I  R  V  S  R  T  N  K  P  C  K  P  K  I  R  D  P  S  I  I  I  I  V  </first_frame>
            <second_frame>  C  L  K  M  C  Q  E  S  T  K  I  M  H  L  L  L  K  L  Y  K  F  L  S  R  N  T  N  A  I  T  R  I  F  K  I  H  E  H  L  S  S  H  F  N  A  I  T  *  S  L  *  S  *  F  S  L  V  K  L  I  G  N  S  S  K  C  S  E  K  Q  *  S  F  T  I  L  F  K  D  *  Y  T  V  Y  I  E  G  L  S  F  G  L  E  T  T  H  K  H  A  I  *  R  T  R  K  I  S  S  S  R  P  L  P  A  K  D  L  S  I  A  S  L  L  C  P  E  L  E  S  *  L  T  Q  S  T  K  L  P  L  N  P  S  S  A  P  T  G  F  R  P  V  T  N  S  S  S  T  T  P  K  L  Y  T  S  P  F  I  E  A  T  N  V  L  E  Y  S  G  G  T  *  P  N  S  P  K  S  P  F  T  N  K  L  S  F  E  S  V  E  P  I  S  L  A  S  P  K  S  V  I  L  A  S  *  S  S  S </second_frame>
            <third_frame>   V  *  K  C  V  K  K  V  Q  R  S  C  I  C  F  S  N  Y  T  N  F  Y  Q  E  T  Q  M  P  *  L  E  Y  S  K  F  M  S  I  Y  L  V  I  S  M  L  *  P  N  L  Y  D  H  D  F  P  W  S  S  *  L  E  T  H  Q  S  V  Q  R  N  N  D  L  S  P  Y  S  S  R  T  D  T  L  C  T  S  K  V  Y  L  S  A  L  K  P  H  T  N  M  Q  F  E  E  L  V  K  F  H  H  L  D  H  F  Q  Q  K  I  Y  Q  S  R  P  Y  Y  V  L  S  S  K  A  D  *  P  N  R  L  N  Y  L  *  I  P  P  P  H  Q  Q  A  S  A  L  S  P  T  Q  V  A  L  L  Q  N  Y  T  H  P  L  S  L  K  Q  P  T  C  S  N  T  Q  E  A  H  N  Q  T  L  P  N  P  H  S  Q  T  S  Y  H  S  S  Q  *  N  Q  *  A  L  Q  A  Q  N  P  *  S  *  H  H  N  H  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38244" stop="38029"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LETHQSVQRNNDLSPYSSRTDTLCTSKVYLSALKPHTNMQFEELVKFHHLDHFQQKIYQSRPYYVLSSKAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="40339" PGL_stop="43083"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40339" e_stop="40661"/>
            <exon e_start="41410" e_stop="41718"/>
            <exon e_start="42862" e_stop="43083"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.837" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40339" e_stop="40661" e_length="323"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.972">
            <gDNA_intron_boundary i_start="40662" i_stop="41409" i_length="748"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41410" e_stop="41718" e_length="309"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.837">
            <gDNA_intron_boundary i_start="41719" i_stop="42861" i_length="1143"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="42862" e_stop="43083" e_length="222"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40339" stop="40661"/>
              <exon start="41410" stop="41706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40339" stop="40661"/>
              <exon start="41410" stop="41706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40340" stop="40661"/>
              <exon start="41410" stop="41513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40433" stop="40661"/>
              <exon start="41410" stop="41652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40469" stop="40661"/>
              <exon start="41410" stop="41718"/>
              <exon start="42862" stop="43001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40482" stop="40661"/>
              <exon start="41410" stop="41718"/>
              <exon start="42862" stop="42917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41418" stop="41718"/>
              <exon start="42862" stop="43083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41418" stop="41718"/>
              <exon start="42862" stop="43040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274863" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAATTCAGAAACCTCCAAATCGAAACTTCATCGGCGGTGAGAAAACGGAGATACAATCAATTCTATGGATTCTCCATTTTCGCCGGCAATTTATCTCTTCATCATCATCTCCTTCTCCTTCTCCTTTCTTTTAGTTTCTTCATCTCCGAATTCATCCCTAGGGCTCGACGCAATCTATAATGGCGAAGCGGAACAAAGAGATGAAAGCGGAATCATAAGGCGTAGACATCTGATGAGCTTTAAGGAGACGCCTATTGGTACAAATATCACTTATGATTGTTCTCCTTCTGGTCCTTGTGTTCCTTGCTCGTACTCCGAAAAG : AAAGATGAAAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACGATTCATCCTCGTCAAAGAGTGGAATACATACGTATATAACTTATAGGAGCTGTGTTCTTTCAATAAATGAGGAGAAGCTGTCAGTACTTGGGTTTGAG : GTGATTATGCTGGGTTTACTGATTGTCAGTGGTTCAACCATATACTTCAGAAAACGGCGAGCAGGCGCTGTATCTGGTGCTGGGCCTGTCAGACTTCCAACTAGTTCTCGATTCTAACTAAAAATCTGTACGTTTGCAGCTTAGGATTCTTTTTTAATCTTCTTACTTTCTTGATTCAAGGTTGCAATCCTAGTAGATTTGTTGTTTAACATGTTTGAATGC</gDNA_template>
            <first_frame> R  I  Q  K  P  P  N  R  N  F  I  G  G  E  K  T  E  I  Q  S  I  L  W  I  L  H  F  R  R  Q  F  I  S  S  S  S  S  P  S  P  S  P  F  F  *  F  L  H  L  R  I  H  P  *  G  S  T  Q  S  I  M  A  K  R  N  K  E  M  K  A  E  S  *  G  V  D  I  *  *  A  L  R  R  R  L  L  V  Q  I  S  L  M  I  V  L  L  L  V  L  V  F  L  A  R  T  P  K  R :   K  M  K  S  I  G  A  V  K  L  D  I  V  S  L  S  T  V  *  R  L  K  L  V  Q  R  K  *  K  T  R  K  E  R  R  S  D  L  L  W  R  T  H  I  L  Q  *  G  H  M  P  *  S  T  M  N  K  L  L  P  P  R  *  D  K  E  I  C  W  T  I  H  P  R  Q  R  V  E  Y  I  R  I  *  L  I  G  A  V  F  F  Q  *  M  R  R  S  C  Q  Y  L  G  L  R :   *  L  C  W  V  Y  *  L  S  V  V  Q  P  Y  T  S  E  N  G  E  Q  A  L  Y  L  V  L  G  L  S  D  F  Q  L  V  L  D  S  N  *  K  S  V  R  L  Q  L  R  I  L  F  *  S  S  Y  F  L  D  S  R  L  Q  S  *  *  I  C  C  L  T  C  L  N   </first_frame>
            <second_frame>  E  F  R  N  L  Q  I  E  T  S  S  A  V  R  K  R  R  Y  N  Q  F  Y  G  F  S  I  F  A  G  N  L  S  L  H  H  H  L  L  L  L  L  L  S  F  S  F  F  I  S  E  F  I  P  R  A  R  R  N  L  *  W  R  S  G  T  K  R  *  K  R  N  H  K  A  *  T  S  D  E  L  *  G  D  A  Y  W  Y  K  Y  H  L  *  L  F  S  F  W  S  L  C  S  L  L  V  L  R  K   : E  R  *  K  V  *  V  Q  *  N  W  I  S  Y  P  F  Q  L  Y  R  D  *  S  *  Y  K  G  S  E  K  Q  E  R  K  E  E  A  I  C  F  G  G  H  I  Y  C  S  K  A  T  C  H  E  A  Q  *  T  S  S  Y  L  L  G  K  T  K  K  F  A  G  R  F  I  L  V  K  E  W  N  T  Y  V  Y  N  L  *  E  L  C  S  F  N  K  *  G  E  A  V  S  T  W  V  *   : G  D  Y  A  G  F  T  D  C  Q  W  F  N  H  I  L  Q  K  T  A  S  R  R  C  I  W  C  W  A  C  Q  T  S  N  *  F  S  I  L  T  K  N  L  Y  V  C  S  L  G  F  F  F  N  L  L  T  F  L  I  Q  G  C  N  P  S  R  F  V  V  *  H  V  *  M  </second_frame>
            <third_frame>   N  S  E  T  S  K  S  K  L  H  R  R  *  E  N  G  D  T  I  N  S  M  D  S  P  F  S  P  A  I  Y  L  F  I  I  I  S  F  S  F  S  F  L  L  V  S  S  S  P  N  S  S  L  G  L  D  A  I  Y  N  G  E  A  E  Q  R  D  E  S  G  I  I  R  R  R  H  L  M  S  F  K  E  T  P  I  G  T  N  I  T  Y  D  C  S  P  S  G  P  C  V  P  C  S  Y  S  E  K  :  K  D  E  K  Y  R  C  S  E  T  G  Y  R  I  P  F  N  C  I  E  I  K  A  S  T  K  E  V  K  N  K  K  G  K  K  K  R  S  A  L  E  D  T  Y  T  A  V  R  P  H  A  M  K  H  N  E  Q  A  L  T  S  S  V  R  Q  R  N  L  L  D  D  S  S  S  S  K  S  G  I  H  T  Y  I  T  Y  R  S  C  V  L  S  I  N  E  E  K  L  S  V  L  G  F  E  :  V  I  M  L  G  L  L  I  V  S  G  S  T  I  Y  F  R  K  R  R  A  G  A  V  S  G  A  G  P  V  R  L  P  T  S  S  R  F  *  L  K  I  C  T  F  A  A  *  D  S  F  L  I  F  L  L  S  *  F  K  V  A  I  L  V  D  L  L  F  N  M  F  E  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40380" stop="40661"/>
                    <exon start="41410" stop="41718"/>
                    <exon start="42862" stop="42978"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENGDTINSMDSPFSPAIYLFIIISFSFSFLLVSSSPNSSLGLDAIYNGEAEQRDESGIIRRRHLMSFKETPIGTNITYDCSPSGPCVPCSYSEKKDEKYRCSETGYRIPFNCIEIKASTKEVKNKKGKKKRSALEDTYTAVRPHAMKHNEQALTSSVRQRNLLDDSSSSKSGIHTYITYRSCVLSINEEKLSVLGFEVIMLGLLIVSGSTIYFRKRRAGAVSGAGPVRLPTSSRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40339" e_stop="40661"/>
            <exon e_start="41410" e_stop="42284"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40339" e_stop="40661" e_length="323"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.972">
            <gDNA_intron_boundary i_start="40662" i_stop="41409" i_length="748"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="41410" e_stop="42284" e_length="875"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40339" stop="40661"/>
              <exon start="41410" stop="41706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40339" stop="40661"/>
              <exon start="41410" stop="41706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40340" stop="40661"/>
              <exon start="41410" stop="41513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40433" stop="40661"/>
              <exon start="41410" stop="41652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41410" stop="42284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553860" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAATTCAGAAACCTCCAAATCGAAACTTCATCGGCGGTGAGAAAACGGAGATACAATCAATTCTATGGATTCTCCATTTTCGCCGGCAATTTATCTCTTCATCATCATCTCCTTCTCCTTCTCCTTTCTTTTAGTTTCTTCATCTCCGAATTCATCCCTAGGGCTCGACGCAATCTATAATGGCGAAGCGGAACAAAGAGATGAAAGCGGAATCATAAGGCGTAGACATCTGATGAGCTTTAAGGAGACGCCTATTGGTACAAATATCACTTATGATTGTTCTCCTTCTGGTCCTTGTGTTCCTTGCTCGTACTCCGAAAAG : AAAGATGAAAAGTATAGGTGCAGTGAAACTGGATATCGTATCCCTTTCAACTGTATAGAGATTAAAGCTAGTACAAAGGAAGTGAAAAACAAGAAAGGAAAGAAGAAGCGATCTGCTTTGGAGGACACATATACTGCAGTAAGGCCACATGCCATGAAGCACAATGAACAAGCTCTTACCTCCTCGGTAAGACAAAGAAATTTGCTGGACGATTCATCCTCGTCAAAGAGTGGAATACATACGTATATAACTTATAGGAGCTGTGTTCTTTCAATAAATGAGGAGAAGCTGTCAGTACTTGGGTTTGAGGTAAGTACATACTTTTTCTGCTTTACATAACTGTCTTGTGGAGAATTATCCAATTTACATTCTGCAACCTGTTTAGCTGTTTCTTTCAATATGGTTGCTGGTTTTAGTATTCAGAAATCATTTCACTGCTATCCAAAAGCAAAACATGAAATTGGATGATTGTGAGATCCATATATTAGAACTAAACAAGTTTTAATAGTGAAAGTTGATGAGGCACTTTATAGAAAAAGAACGTAAGTTATTGAGGTATAGAGAAGTAATTGAAGACCACTCAAGTTAATTGAAGGACTTTGAAAGGAAGGAAGGAGGCTTAATGCATTTCCTCTCTAAATGTGAAAAAATATAACTAGGTAAGTAGAGGGGCATATTGCAATTCGTGAAACTTTCAAAGAAATATTTGAATAATCTGTTATCAGAAAATGGAGAGGATATTATCAGGACTTATTATCCCCAATTTCTGTAGATTCCTCTTGGATTGTCATGTGTAGTCAAAATATAACTTTAGGTTGAAAAGTTCGATACTATTAAATTTAGGTCGACTGACCTAGTCGTCTTGTTTCAAAAAC</gDNA_template>
            <first_frame> R  I  Q  K  P  P  N  R  N  F  I  G  G  E  K  T  E  I  Q  S  I  L  W  I  L  H  F  R  R  Q  F  I  S  S  S  S  S  P  S  P  S  P  F  F  *  F  L  H  L  R  I  H  P  *  G  S  T  Q  S  I  M  A  K  R  N  K  E  M  K  A  E  S  *  G  V  D  I  *  *  A  L  R  R  R  L  L  V  Q  I  S  L  M  I  V  L  L  L  V  L  V  F  L  A  R  T  P  K  R :   K  M  K  S  I  G  A  V  K  L  D  I  V  S  L  S  T  V  *  R  L  K  L  V  Q  R  K  *  K  T  R  K  E  R  R  S  D  L  L  W  R  T  H  I  L  Q  *  G  H  M  P  *  S  T  M  N  K  L  L  P  P  R  *  D  K  E  I  C  W  T  I  H  P  R  Q  R  V  E  Y  I  R  I  *  L  I  G  A  V  F  F  Q  *  M  R  R  S  C  Q  Y  L  G  L  R  *  V  H  T  F  S  A  L  H  N  C  L  V  E  N  Y  P  I  Y  I  L  Q  P  V  *  L  F  L  S  I  W  L  L  V  L  V  F  R  N  H  F  T  A  I  Q  K  Q  N  M  K  L  D  D  C  E  I  H  I  L  E  L  N  K  F  *  *  *  K  L  M  R  H  F  I  E  K  E  R  K  L  L  R  Y  R  E  V  I  E  D  H  S  S  *  L  K  D  F  E  R  K  E  G  G  L  M  H  F  L  S  K  C  E  K  I  *  L  G  K  *  R  G  I  L  Q  F  V  K  L  S  K  K  Y  L  N  N  L  L  S  E  N  G  E  D  I  I  R  T  Y  Y  P  Q  F  L  *  I  P  L  G  L  S  C  V  V  K  I  *  L  *  V  E  K  F  D  T  I  K  F  R  S  T  D  L  V  V  L  F  Q  K  </first_frame>
            <second_frame>  E  F  R  N  L  Q  I  E  T  S  S  A  V  R  K  R  R  Y  N  Q  F  Y  G  F  S  I  F  A  G  N  L  S  L  H  H  H  L  L  L  L  L  L  S  F  S  F  F  I  S  E  F  I  P  R  A  R  R  N  L  *  W  R  S  G  T  K  R  *  K  R  N  H  K  A  *  T  S  D  E  L  *  G  D  A  Y  W  Y  K  Y  H  L  *  L  F  S  F  W  S  L  C  S  L  L  V  L  R  K   : E  R  *  K  V  *  V  Q  *  N  W  I  S  Y  P  F  Q  L  Y  R  D  *  S  *  Y  K  G  S  E  K  Q  E  R  K  E  E  A  I  C  F  G  G  H  I  Y  C  S  K  A  T  C  H  E  A  Q  *  T  S  S  Y  L  L  G  K  T  K  K  F  A  G  R  F  I  L  V  K  E  W  N  T  Y  V  Y  N  L  *  E  L  C  S  F  N  K  *  G  E  A  V  S  T  W  V  *  G  K  Y  I  L  F  L  L  Y  I  T  V  L  W  R  I  I  Q  F  T  F  C  N  L  F  S  C  F  F  Q  Y  G  C  W  F  *  Y  S  E  I  I  S  L  L  S  K  S  K  T  *  N  W  M  I  V  R  S  I  Y  *  N  *  T  S  F  N  S  E  S  *  *  G  T  L  *  K  K  N  V  S  Y  *  G  I  E  K  *  L  K  T  T  Q  V  N  *  R  T  L  K  G  R  K  E  A  *  C  I  S  S  L  N  V  K  K  Y  N  *  V  S  R  G  A  Y  C  N  S  *  N  F  Q  R  N  I  *  I  I  C  Y  Q  K  M  E  R  I  L  S  G  L  I  I  P  N  F  C  R  F  L  L  D  C  H  V  *  S  K  Y  N  F  R  L  K  S  S  I  L  L  N  L  G  R  L  T  *  S  S  C  F  K  N </second_frame>
            <third_frame>   N  S  E  T  S  K  S  K  L  H  R  R  *  E  N  G  D  T  I  N  S  M  D  S  P  F  S  P  A  I  Y  L  F  I  I  I  S  F  S  F  S  F  L  L  V  S  S  S  P  N  S  S  L  G  L  D  A  I  Y  N  G  E  A  E  Q  R  D  E  S  G  I  I  R  R  R  H  L  M  S  F  K  E  T  P  I  G  T  N  I  T  Y  D  C  S  P  S  G  P  C  V  P  C  S  Y  S  E  K  :  K  D  E  K  Y  R  C  S  E  T  G  Y  R  I  P  F  N  C  I  E  I  K  A  S  T  K  E  V  K  N  K  K  G  K  K  K  R  S  A  L  E  D  T  Y  T  A  V  R  P  H  A  M  K  H  N  E  Q  A  L  T  S  S  V  R  Q  R  N  L  L  D  D  S  S  S  S  K  S  G  I  H  T  Y  I  T  Y  R  S  C  V  L  S  I  N  E  E  K  L  S  V  L  G  F  E  V  S  T  Y  F  F  C  F  T  *  L  S  C  G  E  L  S  N  L  H  S  A  T  C  L  A  V  S  F  N  M  V  A  G  F  S  I  Q  K  S  F  H  C  Y  P  K  A  K  H  E  I  G  *  L  *  D  P  Y  I  R  T  K  Q  V  L  I  V  K  V  D  E  A  L  Y  R  K  R  T  *  V  I  E  V  *  R  S  N  *  R  P  L  K  L  I  E  G  L  *  K  E  G  R  R  L  N  A  F  P  L  *  M  *  K  N  I  T  R  *  V  E  G  H  I  A  I  R  E  T  F  K  E  I  F  E  *  S  V  I  R  K  W  R  G  Y  Y  Q  D  L  L  S  P  I  S  V  D  S  S  W  I  V  M  C  S  Q  N  I  T  L  G  *  K  V  R  Y  Y  *  I  *  V  D  *  P  S  R  L  V  S  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40380" stop="40661"/>
                    <exon start="41410" stop="41748"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENGDTINSMDSPFSPAIYLFIIISFSFSFLLVSSSPNSSLGLDAIYNGEAEQRDESGIIRRRHLMSFKETPIGTNITYDCSPSGPCVPCSYSEKKDEKYRCSETGYRIPFNCIEIKASTKEVKNKKGKKKRSALEDTYTAVRPHAMKHNEQALTSSVRQRNLLDDSSSSKSGIHTYITYRSCVLSINEEKLSVLGFEVSTYFFCFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="48551" PGL_stop="42992"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48551" e_stop="48006"/>
            <exon e_start="47101" e_stop="46987"/>
            <exon e_start="45244" e_stop="45136"/>
            <exon e_start="45052" e_stop="44975"/>
            <exon e_start="44442" e_stop="44251"/>
            <exon e_start="44115" e_stop="43681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.943" e_score="0.998"/>
          <exon-intron don_prob="0.865" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.754" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.822" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="48551" e_stop="48006" e_length="546"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.943">
            <gDNA_intron_boundary i_start="48005" i_stop="47102" i_length="904"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47101" e_stop="46987" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.865" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46986" i_stop="45245" i_length="1742"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45244" e_stop="45136" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.754" acc_prob="0.977">
            <gDNA_intron_boundary i_start="45135" i_stop="45053" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45052" e_stop="44975" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44974" i_stop="44443" i_length="532"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44442" e_stop="44251" e_length="192"/>
          </exon>
          <intron i_serial="5" don_prob="0.822" acc_prob="0.968">
            <gDNA_intron_boundary i_start="44250" i_stop="44116" i_length="135"/>
          </intron>
          <exon e_serial="6" e_score="0.913">
            <gDNA_exon_boundary e_start="44115" e_stop="43681" e_length="435"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48551" stop="48006"/>
              <exon start="47101" stop="46987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48529" stop="48006"/>
              <exon start="47101" stop="46987"/>
              <exon start="45244" stop="45136"/>
              <exon start="45052" stop="44975"/>
              <exon start="44442" stop="44251"/>
              <exon start="44115" stop="43765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48523" stop="48006"/>
              <exon start="47101" stop="46987"/>
              <exon start="45244" stop="45198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48517" stop="48006"/>
              <exon start="47101" stop="47084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48512" stop="48164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48503" stop="48006"/>
              <exon start="47101" stop="46987"/>
              <exon start="45244" stop="45136"/>
              <exon start="45052" stop="44981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48486" stop="48006"/>
              <exon start="47101" stop="47066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48458" stop="48006"/>
              <exon start="47101" stop="46987"/>
              <exon start="45244" stop="45156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48352" stop="48006"/>
              <exon start="47101" stop="46987"/>
              <exon start="45244" stop="45136"/>
              <exon start="45052" stop="45035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48153" stop="48006"/>
              <exon start="47101" stop="46987"/>
              <exon start="45244" stop="45136"/>
              <exon start="45052" stop="44975"/>
              <exon start="44442" stop="44251"/>
              <exon start="44115" stop="44052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45239" stop="45136"/>
              <exon start="45052" stop="44975"/>
              <exon start="44442" stop="44251"/>
              <exon start="44115" stop="43681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45239" stop="45136"/>
              <exon start="45052" stop="44975"/>
              <exon start="44442" stop="44251"/>
              <exon start="44115" stop="43717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459007" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTTTTGCTGCAATTTTCACAGTAGAGAGAAGCTTCGCATGAATGGAGACGAATTTCAGAAACAGGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTG : ACCGTGGATACTATTCTGTCGAGACTGTCTCACTATTGGTTGCTTTGAAGGTTCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCATGAAAGCCGACAGATCACTCAAGT : GTATGGTTTTTATGATGAATGTTTGAGGAAGTATGGAAATGCCAATGTTTGGAAGTATTTCACTGATCTCTTTGATTATCTACCATTGACGGCACTCATAGAGAGTCAG : ATATTCTGTTTGCATGGAGGACTCTCACCATCCCTTGATACACTTGATAACATCCGAGCACTGGACCGTATACAAGAG : GTGCCACATGAAGGGCCGATGTGTGATCTCCTATGGTCTGATCCAGACGATCGCTGTGGTTGGGGAATATCACCTCGGGGGGCTGGTTACACATTTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCTCACTGATTTCTAGAGCCCATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAG : GATAAGAATGTTGTAACAGTATTTAGTGCTCCAAACTATTGTTATCGCTGTGGTAATATGGCTGCAATCCTAGAAATAAGTGAAAACATGGAGCAGAATTTCCTTCAGTTTGACCCAGCTCCACGACAGATTGAGCCTGATACTACAAGGAAGACTCCAGACTACTTCTTGTAATCCGAATACTTGAGCTGACTGTTTGTAGCCCATCAGTATCGTATCTTGTAGATGTGTCTTTAAAAAAAAAGGTTATGTTATTTGAGGATTAGTATCATCATCATTGTTTTGTTTGGAGTTTGCTCTGCTGCTGGCTTTTAACATATGCCCGTAGATTCGCCAGAGTTTTGACAAAAAGCCCTTAGTGTCTCTTGTCTCGTATAATTTTTTGCAAAAAGAAGCAGCAATAACATGGTACATTGTGATTTGTTATTAAAGTTT</gDNA_template>
            <first_frame> P  F  C  C  N  F  H  S  R  E  K  L  R  M  N  G  D  E  F  Q  K  Q  E  M  I  Q  R  L  K  P  *  F  L  H  Q  C  S  N  R  *  F  L  F  D  F  N  L  R  R  A  K  T  P  I  L  L  V  N  F  I  A  I  G  F  Y  L  D  S  I  *  G  L  L  G  L  F  L  L  I  E  A  V  R  N  I  *  A  G  D  C  R  G  *  F  C  L  K  K  C  R  R  T  R  M  *  I  G  R  S  S  N  *  W  S  A  S  R  Y  R  R  R  R  *  R  R  C  V  N  K  Q  G  R  Y  *  W  R  N  G  M  C  N  R  *  N  V  R  *  R  C  A  V  I  S  M  D  S  F  T  I  *  L  S  F  F  E  S  A  A  T  L  L  I  L  I  I  S  S  W  E  I  M  L  :  T  V  D  T  I  L  S  R  L  S  H  Y  W  L  L  *  R  F  V  I  E  I  E  S  Q  F  L  G  E  T  M  K  A  D  R  S  L  K   : C  M  V  F  M  M  N  V  *  G  S  M  E  M  P  M  F  G  S  I  S  L  I  S  L  I  I  Y  H  *  R  H  S  *  R  V  R :   Y  S  V  C  M  E  D  S  H  H  P  L  I  H  L  I  T  S  E  H  W  T  V  Y  K  R :   C  H  M  K  G  R  C  V  I  S  Y  G  L  I  Q  T  I  A  V  V  G  E  Y  H  L  G  G  L  V  T  H  L  D  R  I  *  H  L  S  L  I  T  L  M  V  S  H  *  F  L  E  P  I  S  L  S  W  K  V  L  I  G  V  R :   I  R  M  L  *  Q  Y  L  V  L  Q  T  I  V  I  A  V  V  I  W  L  Q  S  *  K  *  V  K  T  W  S  R  I  S  F  S  L  T  Q  L  H  D  R  L  S  L  I  L  Q  G  R  L  Q  T  T  S  C  N  P  N  T  *  A  D  C  L  *  P  I  S  I  V  S  C  R  C  V  F  K  K  K  G  Y  V  I  *  G  L  V  S  S  S  L  F  C  L  E  F  A  L  L  L  A  F  N  I  C  P  *  I  R  Q  S  F  D  K  K  P  L  V  S  L  V  S  Y  N  F  L  Q  K  E  A  A  I  T  W  Y  I  V  I  C  Y  *  S   </first_frame>
            <second_frame>  L  F  A  A  I  F  T  V  E  R  S  F  A  *  M  E  T  N  F  R  N  R  R  *  F  R  D  *  N  P  S  F  F  I  N  V  P  I  V  N  F  C  L  I  L  I  F  G  V  Q  K  L  R  F  C  W  S  I  S  *  Q  L  D  F  T  S  I  R  S  E  D  F  W  V  F  F  C  *  S  K  R  *  G  I  F  R  Q  V  I  V  E  D  N  F  V  *  K  N  A  V  A  R  G  C  R  S  A  D  R  A  I  D  G  V  Q  A  V  I  G  G  G  G  E  D  V  V  *  T  S  K  G  D  T  S  G  G  M  E  C  A  T  G  E  M  S  G  D  G  V  R  *  Y  P  W  T  V  L  R  S  D  *  A  F  S  N  R  R  Q  R  S  *  Y  *  L  S  L  H  G  R  L  C  * :   P  W  I  L  F  C  R  D  C  L  T  I  G  C  F  E  G  S  L  *  R  *  N  H  N  S  *  G  K  P  *  K  P  T  D  H  S  S  :  V  W  F  L  *  *  M  F  E  E  V  W  K  C  Q  C  L  E  V  F  H  *  S  L  *  L  S  T  I  D  G  T  H  R  E  S   : D  I  L  F  A  W  R  T  L  T  I  P  *  Y  T  *  *  H  P  S  T  G  P  Y  T  R   : G  A  T  *  R  A  D  V  *  S  P  M  V  *  S  R  R  S  L  W  L  G  N  I  T  S  G  G  W  L  H  I  W  T  G  Y  S  I  S  V  *  S  H  *  W  S  L  T  D  F  *  S  P  S  A  C  H  G  R  F  *  L  V  S   : G  *  E  C  C  N  S  I  *  C  S  K  L  L  L  S  L  W  *  Y  G  C  N  P  R  N  K  *  K  H  G  A  E  F  P  S  V  *  P  S  S  T  T  D  *  A  *  Y  Y  K  E  D  S  R  L  L  L  V  I  R  I  L  E  L  T  V  C  S  P  S  V  S  Y  L  V  D  V  S  L  K  K  K  V  M  L  F  E  D  *  Y  H  H  H  C  F  V  W  S  L  L  C  C  W  L  L  T  Y  A  R  R  F  A  R  V  L  T  K  S  P  *  C  L  L  S  R  I  I  F  C  K  K  K  Q  Q  *  H  G  T  L  *  F  V  I  K  V  </second_frame>
            <third_frame>   F  L  L  Q  F  S  Q  *  R  E  A  S  H  E  W  R  R  I  S  E  T  G  D  D  S  E  I  E  T  L  V  S  S  S  M  F  Q  S  L  I  S  V  *  F  *  S  S  A  C  K  N  S  D  S  V  G  Q  F  H  S  N  W  I  L  P  R  F  D  L  R  T  F  G  S  F  F  A  N  R  S  G  E  E  Y  L  G  R  *  L  *  R  I  I  L  F  E  K  M  P  S  H  A  D  V  D  R  Q  I  E  Q  L  M  E  C  K  P  L  S  E  A  E  V  K  T  L  C  E  Q  A  R  A  I  L  V  E  E  W  N  V  Q  P  V  K  C  P  V  T  V  C  G  D  I  H  G  Q  F  Y  D  L  I  E  L  F  R  I  G  G  N  A  P  D  T  N  Y  L  F  M  G  D  Y  V   : D  R  G  Y  Y  S  V  E  T  V  S  L  L  V  A  L  K  V  R  Y  R  D  R  I  T  I  L  R  G  N  H  E  S  R  Q  I  T  Q  V :   Y  G  F  Y  D  E  C  L  R  K  Y  G  N  A  N  V  W  K  Y  F  T  D  L  F  D  Y  L  P  L  T  A  L  I  E  S  Q  :  I  F  C  L  H  G  G  L  S  P  S  L  D  T  L  D  N  I  R  A  L  D  R  I  Q  E  :  V  P  H  E  G  P  M  C  D  L  L  W  S  D  P  D  D  R  C  G  W  G  I  S  P  R  G  A  G  Y  T  F  G  Q  D  I  A  S  Q  F  N  H  T  N  G  L  S  L  I  S  R  A  H  Q  L  V  M  E  G  F  N  W  C  Q  :  D  K  N  V  V  T  V  F  S  A  P  N  Y  C  Y  R  C  G  N  M  A  A  I  L  E  I  S  E  N  M  E  Q  N  F  L  Q  F  D  P  A  P  R  Q  I  E  P  D  T  T  R  K  T  P  D  Y  F  L  *  S  E  Y  L  S  *  L  F  V  A  H  Q  Y  R  I  L  *  M  C  L  *  K  K  R  L  C  Y  L  R  I  S  I  I  I  I  V  L  F  G  V  C  S  A  A  G  F  *  H  M  P  V  D  S  P  E  F  *  Q  K  A  L  S  V  S  C  L  V  *  F  F  A  K  R  S  S  N  N  M  V  H  C  D  L  L  L  K  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48279" stop="48006"/>
                    <exon start="47101" stop="46987"/>
                    <exon start="45244" stop="45136"/>
                    <exon start="45052" stop="44975"/>
                    <exon start="44442" stop="44251"/>
                    <exon start="44115" stop="43942"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIILFEKMPSHADVDRQIEQLMECKPLSEAEVKTLCEQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGFNWCQDKNVVTVFSAPNYCYRCGNMAAILEISENMEQNFLQFDPAPRQIEPDTTRKTPDYFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48551" e_stop="48006"/>
            <exon e_start="47101" e_stop="46987"/>
            <exon e_start="45244" e_stop="45136"/>
            <exon e_start="45052" e_stop="44975"/>
            <exon e_start="44442" e_stop="44251"/>
            <exon e_start="44115" e_stop="43694"/>
            <exon e_start="43030" e_stop="42992"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.943" e_score="0.998"/>
          <exon-intron don_prob="0.865" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.754" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.822" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.938"/>
          <exon-only e_score="0.538"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="48551" e_stop="48006" e_length="546"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.943">
            <gDNA_intron_boundary i_start="48005" i_stop="47102" i_length="904"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47101" e_stop="46987" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.865" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46986" i_stop="45245" i_length="1742"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45244" e_stop="45136" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.754" acc_prob="0.977">
            <gDNA_intron_boundary i_start="45135" i_stop="45053" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45052" e_stop="44975" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44974" i_stop="44443" i_length="532"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44442" e_stop="44251" e_length="192"/>
          </exon>
          <intron i_serial="5" don_prob="0.822" acc_prob="0.968">
            <gDNA_intron_boundary i_start="44250" i_stop="44116" i_length="135"/>
          </intron>
          <exon e_serial="6" e_score="0.938">
            <gDNA_exon_boundary e_start="44115" e_stop="43694" e_length="422"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43693" i_stop="43031" i_length="663"/>
          </intron>
          <exon e_serial="7" e_score="0.538">
            <gDNA_exon_boundary e_start="43030" e_stop="42992" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48551" stop="48006"/>
              <exon start="47101" stop="46987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48529" stop="48006"/>
              <exon start="47101" stop="46987"/>
              <exon start="45244" stop="45136"/>
              <exon start="45052" stop="44975"/>
              <exon start="44442" stop="44251"/>
              <exon start="44115" stop="43765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48523" stop="48006"/>
              <exon start="47101" stop="46987"/>
              <exon start="45244" stop="45198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48517" stop="48006"/>
              <exon start="47101" stop="47084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48512" stop="48164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48503" stop="48006"/>
              <exon start="47101" stop="46987"/>
              <exon start="45244" stop="45136"/>
              <exon start="45052" stop="44981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48486" stop="48006"/>
              <exon start="47101" stop="47066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48458" stop="48006"/>
              <exon start="47101" stop="46987"/>
              <exon start="45244" stop="45156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48352" stop="48006"/>
              <exon start="47101" stop="46987"/>
              <exon start="45244" stop="45136"/>
              <exon start="45052" stop="45035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48153" stop="48006"/>
              <exon start="47101" stop="46987"/>
              <exon start="45244" stop="45136"/>
              <exon start="45052" stop="44975"/>
              <exon start="44442" stop="44251"/>
              <exon start="44115" stop="44052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45239" stop="45136"/>
              <exon start="45052" stop="44975"/>
              <exon start="44442" stop="44251"/>
              <exon start="44115" stop="43717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44348" stop="44251"/>
              <exon start="44115" stop="43694"/>
              <exon start="43030" stop="42992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436456" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTTTTGCTGCAATTTTCACAGTAGAGAGAAGCTTCGCATGAATGGAGACGAATTTCAGAAACAGGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTG : ACCGTGGATACTATTCTGTCGAGACTGTCTCACTATTGGTTGCTTTGAAGGTTCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCATGAAAGCCGACAGATCACTCAAGT : GTATGGTTTTTATGATGAATGTTTGAGGAAGTATGGAAATGCCAATGTTTGGAAGTATTTCACTGATCTCTTTGATTATCTACCATTGACGGCACTCATAGAGAGTCAG : ATATTCTGTTTGCATGGAGGACTCTCACCATCCCTTGATACACTTGATAACATCCGAGCACTGGACCGTATACAAGAG : GTGCCACATGAAGGGCCGATGTGTGATCTCCTATGGTCTGATCCAGACGATCGCTGTGGTTGGGGAATATCACCTCGGGGGGCTGGTTACACATTTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCTCACTGATTTCTAGAGCCCATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAG : GATAAGAATGTTGTAACAGTATTTAGTGCTCCAAACTATTGTTATCGCTGTGGTAATATGGCTGCAATCCTAGAAATAAGTGAAAACATGGAGCAGAATTTCCTTCAGTTTGACCCAGCTCCACGACAGATTGAGCCTGATACTACAAGGAAGACTCCAGACTACTTCTTGTAATCCGAATACTTGAGCTGACTGTTTGTAGCCCATCAGTATCGTATCTTGTAGATGTGTCTTTAAAAAAAAAGGTTATGTTATTTGAGGATTAGTATCATCATCATTGTTTTGTTTGGAGTTTGCTCTGCTGCTGGCTTTTAACATATGCCCGTAGATTCGCCAGAGTTTTGACAAAAAGCCCTTAGTGTCTCTTGTCTCGTATAATTTTTTGCAAAAAGAAGCAGCAATAACATGGTACATTGTGATTT : AAAGTAAGAAGATTAAAAAAGAATCCTAAGCTGCAAACG</gDNA_template>
            <first_frame> P  F  C  C  N  F  H  S  R  E  K  L  R  M  N  G  D  E  F  Q  K  Q  E  M  I  Q  R  L  K  P  *  F  L  H  Q  C  S  N  R  *  F  L  F  D  F  N  L  R  R  A  K  T  P  I  L  L  V  N  F  I  A  I  G  F  Y  L  D  S  I  *  G  L  L  G  L  F  L  L  I  E  A  V  R  N  I  *  A  G  D  C  R  G  *  F  C  L  K  K  C  R  R  T  R  M  *  I  G  R  S  S  N  *  W  S  A  S  R  Y  R  R  R  R  *  R  R  C  V  N  K  Q  G  R  Y  *  W  R  N  G  M  C  N  R  *  N  V  R  *  R  C  A  V  I  S  M  D  S  F  T  I  *  L  S  F  F  E  S  A  A  T  L  L  I  L  I  I  S  S  W  E  I  M  L  :  T  V  D  T  I  L  S  R  L  S  H  Y  W  L  L  *  R  F  V  I  E  I  E  S  Q  F  L  G  E  T  M  K  A  D  R  S  L  K   : C  M  V  F  M  M  N  V  *  G  S  M  E  M  P  M  F  G  S  I  S  L  I  S  L  I  I  Y  H  *  R  H  S  *  R  V  R :   Y  S  V  C  M  E  D  S  H  H  P  L  I  H  L  I  T  S  E  H  W  T  V  Y  K  R :   C  H  M  K  G  R  C  V  I  S  Y  G  L  I  Q  T  I  A  V  V  G  E  Y  H  L  G  G  L  V  T  H  L  D  R  I  *  H  L  S  L  I  T  L  M  V  S  H  *  F  L  E  P  I  S  L  S  W  K  V  L  I  G  V  R :   I  R  M  L  *  Q  Y  L  V  L  Q  T  I  V  I  A  V  V  I  W  L  Q  S  *  K  *  V  K  T  W  S  R  I  S  F  S  L  T  Q  L  H  D  R  L  S  L  I  L  Q  G  R  L  Q  T  T  S  C  N  P  N  T  *  A  D  C  L  *  P  I  S  I  V  S  C  R  C  V  F  K  K  K  G  Y  V  I  *  G  L  V  S  S  S  L  F  C  L  E  F  A  L  L  L  A  F  N  I  C  P  *  I  R  Q  S  F  D  K  K  P  L  V  S  L  V  S  Y  N  F  L  Q  K  E  A  A  I  T  W  Y  I  V  I   : *  S  K  K  I  K  K  E  S  *  A  A  N  </first_frame>
            <second_frame>  L  F  A  A  I  F  T  V  E  R  S  F  A  *  M  E  T  N  F  R  N  R  R  *  F  R  D  *  N  P  S  F  F  I  N  V  P  I  V  N  F  C  L  I  L  I  F  G  V  Q  K  L  R  F  C  W  S  I  S  *  Q  L  D  F  T  S  I  R  S  E  D  F  W  V  F  F  C  *  S  K  R  *  G  I  F  R  Q  V  I  V  E  D  N  F  V  *  K  N  A  V  A  R  G  C  R  S  A  D  R  A  I  D  G  V  Q  A  V  I  G  G  G  G  E  D  V  V  *  T  S  K  G  D  T  S  G  G  M  E  C  A  T  G  E  M  S  G  D  G  V  R  *  Y  P  W  T  V  L  R  S  D  *  A  F  S  N  R  R  Q  R  S  *  Y  *  L  S  L  H  G  R  L  C  * :   P  W  I  L  F  C  R  D  C  L  T  I  G  C  F  E  G  S  L  *  R  *  N  H  N  S  *  G  K  P  *  K  P  T  D  H  S  S  :  V  W  F  L  *  *  M  F  E  E  V  W  K  C  Q  C  L  E  V  F  H  *  S  L  *  L  S  T  I  D  G  T  H  R  E  S   : D  I  L  F  A  W  R  T  L  T  I  P  *  Y  T  *  *  H  P  S  T  G  P  Y  T  R   : G  A  T  *  R  A  D  V  *  S  P  M  V  *  S  R  R  S  L  W  L  G  N  I  T  S  G  G  W  L  H  I  W  T  G  Y  S  I  S  V  *  S  H  *  W  S  L  T  D  F  *  S  P  S  A  C  H  G  R  F  *  L  V  S   : G  *  E  C  C  N  S  I  *  C  S  K  L  L  L  S  L  W  *  Y  G  C  N  P  R  N  K  *  K  H  G  A  E  F  P  S  V  *  P  S  S  T  T  D  *  A  *  Y  Y  K  E  D  S  R  L  L  L  V  I  R  I  L  E  L  T  V  C  S  P  S  V  S  Y  L  V  D  V  S  L  K  K  K  V  M  L  F  E  D  *  Y  H  H  H  C  F  V  W  S  L  L  C  C  W  L  L  T  Y  A  R  R  F  A  R  V  L  T  K  S  P  *  C  L  L  S  R  I  I  F  C  K  K  K  Q  Q  *  H  G  T  L  *  F  :  K  V  R  R  L  K  K  N  P  K  L  Q  T </second_frame>
            <third_frame>   F  L  L  Q  F  S  Q  *  R  E  A  S  H  E  W  R  R  I  S  E  T  G  D  D  S  E  I  E  T  L  V  S  S  S  M  F  Q  S  L  I  S  V  *  F  *  S  S  A  C  K  N  S  D  S  V  G  Q  F  H  S  N  W  I  L  P  R  F  D  L  R  T  F  G  S  F  F  A  N  R  S  G  E  E  Y  L  G  R  *  L  *  R  I  I  L  F  E  K  M  P  S  H  A  D  V  D  R  Q  I  E  Q  L  M  E  C  K  P  L  S  E  A  E  V  K  T  L  C  E  Q  A  R  A  I  L  V  E  E  W  N  V  Q  P  V  K  C  P  V  T  V  C  G  D  I  H  G  Q  F  Y  D  L  I  E  L  F  R  I  G  G  N  A  P  D  T  N  Y  L  F  M  G  D  Y  V   : D  R  G  Y  Y  S  V  E  T  V  S  L  L  V  A  L  K  V  R  Y  R  D  R  I  T  I  L  R  G  N  H  E  S  R  Q  I  T  Q  V :   Y  G  F  Y  D  E  C  L  R  K  Y  G  N  A  N  V  W  K  Y  F  T  D  L  F  D  Y  L  P  L  T  A  L  I  E  S  Q  :  I  F  C  L  H  G  G  L  S  P  S  L  D  T  L  D  N  I  R  A  L  D  R  I  Q  E  :  V  P  H  E  G  P  M  C  D  L  L  W  S  D  P  D  D  R  C  G  W  G  I  S  P  R  G  A  G  Y  T  F  G  Q  D  I  A  S  Q  F  N  H  T  N  G  L  S  L  I  S  R  A  H  Q  L  V  M  E  G  F  N  W  C  Q  :  D  K  N  V  V  T  V  F  S  A  P  N  Y  C  Y  R  C  G  N  M  A  A  I  L  E  I  S  E  N  M  E  Q  N  F  L  Q  F  D  P  A  P  R  Q  I  E  P  D  T  T  R  K  T  P  D  Y  F  L  *  S  E  Y  L  S  *  L  F  V  A  H  Q  Y  R  I  L  *  M  C  L  *  K  K  R  L  C  Y  L  R  I  S  I  I  I  I  V  L  F  G  V  C  S  A  A  G  F  *  H  M  P  V  D  S  P  E  F  *  Q  K  A  L  S  V  S  C  L  V  *  F  F  A  K  R  S  S  N  N  M  V  H  C  D  L :   K  *  E  D  *  K  R  I  L  S  C  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48279" stop="48006"/>
                    <exon start="47101" stop="46987"/>
                    <exon start="45244" stop="45136"/>
                    <exon start="45052" stop="44975"/>
                    <exon start="44442" stop="44251"/>
                    <exon start="44115" stop="43942"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIILFEKMPSHADVDRQIEQLMECKPLSEAEVKTLCEQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGFNWCQDKNVVTVFSAPNYCYRCGNMAAILEISENMEQNFLQFDPAPRQIEPDTTRKTPDYFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="48533" e_stop="48006"/>
            <exon e_start="47051" e_stop="46987"/>
            <exon e_start="45244" e_stop="45136"/>
            <exon e_start="45052" e_stop="44975"/>
            <exon e_start="44442" e_stop="44251"/>
            <exon e_start="44115" e_stop="43558"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.791" e_score="0.998"/>
          <exon-intron don_prob="0.865" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.754" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.822" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="48533" e_stop="48006" e_length="528"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.791">
            <gDNA_intron_boundary i_start="48005" i_stop="47052" i_length="954"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47051" e_stop="46987" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.865" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46986" i_stop="45245" i_length="1742"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45244" e_stop="45136" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.754" acc_prob="0.977">
            <gDNA_intron_boundary i_start="45135" i_stop="45053" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45052" e_stop="44975" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44974" i_stop="44443" i_length="532"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44442" e_stop="44251" e_length="192"/>
          </exon>
          <intron i_serial="5" don_prob="0.822" acc_prob="0.968">
            <gDNA_intron_boundary i_start="44250" i_stop="44116" i_length="135"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="44115" e_stop="43558" e_length="558"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48533" stop="48006"/>
              <exon start="47051" stop="46987"/>
              <exon start="45244" stop="45136"/>
              <exon start="45052" stop="44975"/>
              <exon start="44442" stop="44251"/>
              <exon start="44115" stop="43558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48512" stop="48164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45239" stop="45136"/>
              <exon start="45052" stop="44975"/>
              <exon start="44442" stop="44251"/>
              <exon start="44115" stop="43681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45239" stop="45136"/>
              <exon start="45052" stop="44975"/>
              <exon start="44442" stop="44251"/>
              <exon start="44115" stop="43717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459007" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAGTAGAGAGAAGCTTCGCATGAATGGAGACGAATTTCAGAAACAGGAGATGATTCAGAGATTGAAACCCTAGTTTCTTCATCAATGTTCCAATCGTTAATTTCTGTTTGATTTTAATCTTCGGCGTGCAAAAACTCCGATTCTGTTGGTCAATTTCATAGCAATTGGATTTTACCTCGATTCGATCTGAGGACTTTTGGGTCTTTTTTTGCTAATCGAAGCGGTGAGGAATATTTAGGCAGGTGATTGTAGAGGATAATTTTGTTTGAAAAAATGCCGTCGCACGCGGATGTAGATCGGCAGATCGAGCAATTGATGGAGTGCAAGCCGTTATCGGAGGCGGAGGTGAAGACGTTGTGTGAACAAGCAAGGGCGATACTAGTGGAGGAATGGAATGTGCAACCGGTGAAATGTCCGGTGACGGTGTGCGGTGATATCCATGGACAGTTTTACGATCTGATTGAGCTTTTTCGAATCGGCGGCAACGCTCCTGATACTAATTATCTCTTCATGGGAGATTATGTTG : GTTCGTTATAGAGATAGAATCACAATTCTTAGGGGAAACCATGAAAGCCGACAGATCACTCAAGT : GTATGGTTTTTATGATGAATGTTTGAGGAAGTATGGAAATGCCAATGTTTGGAAGTATTTCACTGATCTCTTTGATTATCTACCATTGACGGCACTCATAGAGAGTCAG : ATATTCTGTTTGCATGGAGGACTCTCACCATCCCTTGATACACTTGATAACATCCGAGCACTGGACCGTATACAAGAG : GTGCCACATGAAGGGCCGATGTGTGATCTCCTATGGTCTGATCCAGACGATCGCTGTGGTTGGGGAATATCACCTCGGGGGGCTGGTTACACATTTGGACAGGATATAGCATCTCAGTTTAATCACACTAATGGTCTCTCACTGATTTCTAGAGCCCATCAGCTTGTCATGGAAGGTTTTAATTGGTGTCAG : GATAAGAATGTTGTAACAGTATTTAGTGCTCCAAACTATTGTTATCGCTGTGGTAATATGGCTGCAATCCTAGAAATAAGTGAAAACATGGAGCAGAATTTCCTTCAGTTTGACCCAGCTCCACGACAGATTGAGCCTGATACTACAAGGAAGACTCCAGACTACTTCTTGTAATCCGAATACTTGAGCTGACTGTTTGTAGCCCATCAGTATCGTATCTTGTAGATGTGTCTTTAAAAAAAAAGGTTATGTTATTTGAGGATTAGTATCATCATCATTGTTTTGTTTGGAGTTTGCTCTGCTGCTGGCTTTTAACATATGCCCGTAGATTCGCCAGAGTTTTGACAAAAAGCCCTTAGTGTCTCTTGTCTCGTATAATTTTTTGCAAAAAGAAGCAGCAATAACATGGTACATTGTGATTTGTTATTAAAGTTTATCGTAGAAAGCAGGTTCTTTCAGGTACCAATTTCTCTGCCAATGGCTATTGGCGCCTGAATCTGTTGATGGAACCAATTAATTTAGGTTTTGGCTTTCCTTATAAAACATTTTTTACCATTT</gDNA_template>
            <first_frame> H  S  R  E  K  L  R  M  N  G  D  E  F  Q  K  Q  E  M  I  Q  R  L  K  P  *  F  L  H  Q  C  S  N  R  *  F  L  F  D  F  N  L  R  R  A  K  T  P  I  L  L  V  N  F  I  A  I  G  F  Y  L  D  S  I  *  G  L  L  G  L  F  L  L  I  E  A  V  R  N  I  *  A  G  D  C  R  G  *  F  C  L  K  K  C  R  R  T  R  M  *  I  G  R  S  S  N  *  W  S  A  S  R  Y  R  R  R  R  *  R  R  C  V  N  K  Q  G  R  Y  *  W  R  N  G  M  C  N  R  *  N  V  R  *  R  C  A  V  I  S  M  D  S  F  T  I  *  L  S  F  F  E  S  A  A  T  L  L  I  L  I  I  S  S  W  E  I  M  L  :  V  R  Y  R  D  R  I  T  I  L  R  G  N  H  E  S  R  Q  I  T  Q  V :   Y  G  F  Y  D  E  C  L  R  K  Y  G  N  A  N  V  W  K  Y  F  T  D  L  F  D  Y  L  P  L  T  A  L  I  E  S  Q  :  I  F  C  L  H  G  G  L  S  P  S  L  D  T  L  D  N  I  R  A  L  D  R  I  Q  E  :  V  P  H  E  G  P  M  C  D  L  L  W  S  D  P  D  D  R  C  G  W  G  I  S  P  R  G  A  G  Y  T  F  G  Q  D  I  A  S  Q  F  N  H  T  N  G  L  S  L  I  S  R  A  H  Q  L  V  M  E  G  F  N  W  C  Q  :  D  K  N  V  V  T  V  F  S  A  P  N  Y  C  Y  R  C  G  N  M  A  A  I  L  E  I  S  E  N  M  E  Q  N  F  L  Q  F  D  P  A  P  R  Q  I  E  P  D  T  T  R  K  T  P  D  Y  F  L  *  S  E  Y  L  S  *  L  F  V  A  H  Q  Y  R  I  L  *  M  C  L  *  K  K  R  L  C  Y  L  R  I  S  I  I  I  I  V  L  F  G  V  C  S  A  A  G  F  *  H  M  P  V  D  S  P  E  F  *  Q  K  A  L  S  V  S  C  L  V  *  F  F  A  K  R  S  S  N  N  M  V  H  C  D  L  L  L  K  F  I  V  E  S  R  F  F  Q  V  P  I  S  L  P  M  A  I  G  A  *  I  C  *  W  N  Q  L  I  *  V  L  A  F  L  I  K  H  F  L  P  F </first_frame>
            <second_frame>  T  V  E  R  S  F  A  *  M  E  T  N  F  R  N  R  R  *  F  R  D  *  N  P  S  F  F  I  N  V  P  I  V  N  F  C  L  I  L  I  F  G  V  Q  K  L  R  F  C  W  S  I  S  *  Q  L  D  F  T  S  I  R  S  E  D  F  W  V  F  F  C  *  S  K  R  *  G  I  F  R  Q  V  I  V  E  D  N  F  V  *  K  N  A  V  A  R  G  C  R  S  A  D  R  A  I  D  G  V  Q  A  V  I  G  G  G  G  E  D  V  V  *  T  S  K  G  D  T  S  G  G  M  E  C  A  T  G  E  M  S  G  D  G  V  R  *  Y  P  W  T  V  L  R  S  D  *  A  F  S  N  R  R  Q  R  S  *  Y  *  L  S  L  H  G  R  L  C  W :   F  V  I  E  I  E  S  Q  F  L  G  E  T  M  K  A  D  R  S  L  K   : C  M  V  F  M  M  N  V  *  G  S  M  E  M  P  M  F  G  S  I  S  L  I  S  L  I  I  Y  H  *  R  H  S  *  R  V  R :   Y  S  V  C  M  E  D  S  H  H  P  L  I  H  L  I  T  S  E  H  W  T  V  Y  K  R :   C  H  M  K  G  R  C  V  I  S  Y  G  L  I  Q  T  I  A  V  V  G  E  Y  H  L  G  G  L  V  T  H  L  D  R  I  *  H  L  S  L  I  T  L  M  V  S  H  *  F  L  E  P  I  S  L  S  W  K  V  L  I  G  V  R :   I  R  M  L  *  Q  Y  L  V  L  Q  T  I  V  I  A  V  V  I  W  L  Q  S  *  K  *  V  K  T  W  S  R  I  S  F  S  L  T  Q  L  H  D  R  L  S  L  I  L  Q  G  R  L  Q  T  T  S  C  N  P  N  T  *  A  D  C  L  *  P  I  S  I  V  S  C  R  C  V  F  K  K  K  G  Y  V  I  *  G  L  V  S  S  S  L  F  C  L  E  F  A  L  L  L  A  F  N  I  C  P  *  I  R  Q  S  F  D  K  K  P  L  V  S  L  V  S  Y  N  F  L  Q  K  E  A  A  I  T  W  Y  I  V  I  C  Y  *  S  L  S  *  K  A  G  S  F  R  Y  Q  F  L  C  Q  W  L  L  A  P  E  S  V  D  G  T  N  *  F  R  F  W  L  S  L  *  N  I  F  Y  H   </second_frame>
            <third_frame>   Q  *  R  E  A  S  H  E  W  R  R  I  S  E  T  G  D  D  S  E  I  E  T  L  V  S  S  S  M  F  Q  S  L  I  S  V  *  F  *  S  S  A  C  K  N  S  D  S  V  G  Q  F  H  S  N  W  I  L  P  R  F  D  L  R  T  F  G  S  F  F  A  N  R  S  G  E  E  Y  L  G  R  *  L  *  R  I  I  L  F  E  K  M  P  S  H  A  D  V  D  R  Q  I  E  Q  L  M  E  C  K  P  L  S  E  A  E  V  K  T  L  C  E  Q  A  R  A  I  L  V  E  E  W  N  V  Q  P  V  K  C  P  V  T  V  C  G  D  I  H  G  Q  F  Y  D  L  I  E  L  F  R  I  G  G  N  A  P  D  T  N  Y  L  F  M  G  D  Y  V   : G  S  L  *  R  *  N  H  N  S  *  G  K  P  *  K  P  T  D  H  S  S  :  V  W  F  L  *  *  M  F  E  E  V  W  K  C  Q  C  L  E  V  F  H  *  S  L  *  L  S  T  I  D  G  T  H  R  E  S   : D  I  L  F  A  W  R  T  L  T  I  P  *  Y  T  *  *  H  P  S  T  G  P  Y  T  R   : G  A  T  *  R  A  D  V  *  S  P  M  V  *  S  R  R  S  L  W  L  G  N  I  T  S  G  G  W  L  H  I  W  T  G  Y  S  I  S  V  *  S  H  *  W  S  L  T  D  F  *  S  P  S  A  C  H  G  R  F  *  L  V  S   : G  *  E  C  C  N  S  I  *  C  S  K  L  L  L  S  L  W  *  Y  G  C  N  P  R  N  K  *  K  H  G  A  E  F  P  S  V  *  P  S  S  T  T  D  *  A  *  Y  Y  K  E  D  S  R  L  L  L  V  I  R  I  L  E  L  T  V  C  S  P  S  V  S  Y  L  V  D  V  S  L  K  K  K  V  M  L  F  E  D  *  Y  H  H  H  C  F  V  W  S  L  L  C  C  W  L  L  T  Y  A  R  R  F  A  R  V  L  T  K  S  P  *  C  L  L  S  R  I  I  F  C  K  K  K  Q  Q  *  H  G  T  L  *  F  V  I  K  V  Y  R  R  K  Q  V  L  S  G  T  N  F  S  A  N  G  Y  W  R  L  N  L  L  M  E  P  I  N  L  G  F  G  F  P  Y  K  T  F  F  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48071" stop="48006"/>
                    <exon start="47051" stop="46987"/>
                    <exon start="45244" stop="45136"/>
                    <exon start="45052" stop="44975"/>
                    <exon start="44442" stop="44251"/>
                    <exon start="44115" stop="43942"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSFFESAATLLILIISSWEIMLVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGFNWCQDKNVVTVFSAPNYCYRCGNMAAILEISENMEQNFLQFDPAPRQIEPDTTRKTPDYFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="46218" e_stop="45726"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46218" e_stop="45726" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46218" stop="45726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314869" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAACGTGTTTCTTGAATTCTATGCAGCAAAAACATGTACTTAGGTAATGTAAATGAGAAGGGAGCAATACTTCTGGAGAACCAATGATGGCCTTCTCATCCCCATGCTATTTGACAAGACATGTTTGTTCATTGCTTTGGTTTTCCAGCTCCTGTGAACCTTGATCACTGATAATGATTAGTTTTTTTTCTTTCTTATTTCTTAGTATTTTGGGGGATTTAACCCTCACCAACAGGTGAAAATTCAGGTAGCCAACCAACTGGACTACTAAAATTCCCAAGGATTAGGTTGATTAAGCTTTTTATAGAAATTGGTCTAGTTGAACTGCTGGGATAATGTAAGAACTATTATAATTGTTCCTGGCGAGTGAGGTTACCATAACAAGCAAAATTGTTTATAAGGGTCTATGCGAAGATCATGTCTGCCTGAAGTCAAGCTCCTATTATTGCCACTGACCACCCCTAGTCTCTGAAGTCATGAAGCTCTTTGAA</gDNA_template>
            <first_frame> T  N  V  F  L  E  F  Y  A  A  K  T  C  T  *  V  M  *  M  R  R  E  Q  Y  F  W  R  T  N  D  G  L  L  I  P  M  L  F  D  K  T  C  L  F  I  A  L  V  F  Q  L  L  *  T  L  I  T  D  N  D  *  F  F  F  F  L  I  S  *  Y  F  G  G  F  N  P  H  Q  Q  V  K  I  Q  V  A  N  Q  L  D  Y  *  N  S  Q  G  L  G  *  L  S  F  L  *  K  L  V  *  L  N  C  W  D  N  V  R  T  I  I  I  V  P  G  E  *  G  Y  H  N  K  Q  N  C  L  *  G  S  M  R  R  S  C  L  P  E  V  K  L  L  L  L  P  L  T  T  P  S  L  *  S  H  E  A  L  *  </first_frame>
            <second_frame>  Q  T  C  F  L  N  S  M  Q  Q  K  H  V  L  R  *  C  K  *  E  G  S  N  T  S  G  E  P  M  M  A  F  S  S  P  C  Y  L  T  R  H  V  C  S  L  L  W  F  S  S  S  C  E  P  *  S  L  I  M  I  S  F  F  S  F  L  F  L  S  I  L  G  D  L  T  L  T  N  R  *  K  F  R  *  P  T  N  W  T  T  K  I  P  K  D  *  V  D  *  A  F  Y  R  N  W  S  S  *  T  A  G  I  M  *  E  L  L  *  L  F  L  A  S  E  V  T  I  T  S  K  I  V  Y  K  G  L  C  E  D  H  V  C  L  K  S  S  S  Y  Y  C  H  *  P  P  L  V  S  E  V  M  K  L  F  E </second_frame>
            <third_frame>   K  R  V  S  *  I  L  C  S  K  N  M  Y  L  G  N  V  N  E  K  G  A  I  L  L  E  N  Q  *  W  P  S  H  P  H  A  I  *  Q  D  M  F  V  H  C  F  G  F  P  A  P  V  N  L  D  H  *  *  *  L  V  F  F  L  S  Y  F  L  V  F  W  G  I  *  P  S  P  T  G  E  N  S  G  S  Q  P  T  G  L  L  K  F  P  R  I  R  L  I  K  L  F  I  E  I  G  L  V  E  L  L  G  *  C  K  N  Y  Y  N  C  S  W  R  V  R  L  P  *  Q  A  K  L  F  I  R  V  Y  A  K  I  M  S  A  *  S  Q  A  P  I  I  A  T  D  H  P  *  S  L  K  S  *  S  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C05HBa0115F01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="90623" PGL_stop="93350"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90623" e_stop="90874"/>
            <exon e_start="93160" e_stop="93350"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90623" e_stop="90874" e_length="252"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90875" i_stop="93159" i_length="2285"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="93160" e_stop="93350" e_length="191"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90623" stop="90874"/>
              <exon start="93160" stop="93350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350641" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATTCTCTAAGGTTTTTTTAAGTTTTTTTGTTTTTCTAGTATTTTTTTTGTTATTGTTGATTGAAGTACTTGAAAATGGAGGTGTTACAACAAAAATGAATTATGTTGATGATCAAGTTATGAAAAATAGCAAAGTAGTGATGAAAACACACAAAAGATCAAGTGGTGCTCATCATGTTCATCAAAAAATTGATTTCAATTTGGTGAGTAAAAGAAGAGTTCCTAATGGTCCTGACCCAATCCACAACAG : AAGAGCTCGGAGTTCTCGTAGACCACCAGGCCAAGCTTCCAAAGGAAAACTCAACATTAAGCCATAATTAACAAATTAGGCCAAATTAGATAATTAAGGTTTGTGAGATGTGTTTTTTTTTTTTTTTGAAAAAAAAAAAACTTGTATGTAATTGTTGAAAAAGGGAAGTCTCTATACATATTGTCAGATGA</gDNA_template>
            <first_frame> K  I  L  *  G  F  F  K  F  F  C  F  S  S  I  F  F  V  I  V  D  *  S  T  *  K  W  R  C  Y  N  K  N  E  L  C  *  *  S  S  Y  E  K  *  Q  S  S  D  E  N  T  Q  K  I  K  W  C  S  S  C  S  S  K  N  *  F  Q  F  G  E  *  K  K  S  S  *  W  S  *  P  N  P  Q  Q  :  K  S  S  E  F  S  *  T  T  R  P  S  F  Q  R  K  T  Q  H  *  A  I  I  N  K  L  G  Q  I  R  *  L  R  F  V  R  C  V  F  F  F  F  *  K  K  K  N  L  Y  V  I  V  E  K  G  K  S  L  Y  I  L  S  D   </first_frame>
            <second_frame>  K  F  S  K  V  F  L  S  F  F  V  F  L  V  F  F  L  L  L  L  I  E  V  L  E  N  G  G  V  T  T  K  M  N  Y  V  D  D  Q  V  M  K  N  S  K  V  V  M  K  T  H  K  R  S  S  G  A  H  H  V  H  Q  K  I  D  F  N  L  V  S  K  R  R  V  P  N  G  P  D  P  I  H  N  R :   R  A  R  S  S  R  R  P  P  G  Q  A  S  K  G  K  L  N  I  K  P  *  L  T  N  *  A  K  L  D  N  *  G  L  *  D  V  F  F  F  F  F  E  K  K  K  T  C  M  *  L  L  K  K  G  S  L  Y  T  Y  C  Q  M  </second_frame>
            <third_frame>   N  S  L  R  F  F  *  V  F  L  F  F  *  Y  F  F  C  Y  C  *  L  K  Y  L  K  M  E  V  L  Q  Q  K  *  I  M  L  M  I  K  L  *  K  I  A  K  *  *  *  K  H  T  K  D  Q  V  V  L  I  M  F  I  K  K  L  I  S  I  W  *  V  K  E  E  F  L  M  V  L  T  Q  S  T  T   : E  E  L  G  V  L  V  D  H  Q  A  K  L  P  K  E  N  S  T  L  S  H  N  *  Q  I  R  P  N  *  I  I  K  V  C  E  M  C  F  F  F  F  L  K  K  K  K  L  V  C  N  C  *  K  R  E  V  S  I  H  I  V  R  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90624" stop="90874"/>
                    <exon start="93160" stop="93226"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFSKVFLSFFVFLVFFLLLLIEVLENGGVTTKMNYVDDQVMKNSKVVMKTHKRSSGAHHVHQKIDFNLVSKRRVPNGPDPIHNRRARSSRRPPGQASKGKLNIKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="98711" PGL_stop="98135"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98711" e_stop="98405"/>
            <exon e_start="98332" e_stop="98135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.909"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="98711" e_stop="98405" e_length="307"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="98404" i_stop="98333" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="98332" e_stop="98135" e_length="198"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98711" stop="98405"/>
              <exon start="98332" stop="98135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440572" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGAACTGTGAGCACCTTGGATCACTACCCGATTCCATTGGAGAATTATTAGCTCTTAGAACAATGACTATTACTCGAAATGATGCTATCACGGAGCTGCCAGAATCAGTTGGAGAGTTGCAGAATCTCGTCATATTGAGATTGACCAAATGTAAGCGTCTGCACAAACTGCCAGATTCTATTGGGGAACTAAAGAACTTAGTACACTTGTTAATGGAGGAGACTGCAGTAACAGTATTACCTCAAACTTTTGGGATGCTATCGAGCTTAATGATTCTGAGGATGGGAAAGAAGCCTTTCCTTCAG : GTACCACAAAGTACTGAAATCACAGAAACAGCTACCTATGCAGAAAGGGAAACCGTACCTATTGTGCTTCCTTCATCTTTCTCAAAGTTATCCTTGTTAGAAGAACTTAATGCACGTGCATGGCGAATAGTTGGGAAAATACCTGATGATTTTGAGAAACTGTCATCTTTGGAGTTCATCGATCTCGGTCACAATGAT</gDNA_template>
            <first_frame> K  E  L  *  A  P  W  I  T  T  R  F  H  W  R  I  I  S  S  *  N  N  D  Y  Y  S  K  *  C  Y  H  G  A  A  R  I  S  W  R  V  A  E  S  R  H  I  E  I  D  Q  M  *  A  S  A  Q  T  A  R  F  Y  W  G  T  K  E  L  S  T  L  V  N  G  G  D  C  S  N  S  I  T  S  N  F  W  D  A  I  E  L  N  D  S  E  D  G  K  E  A  F  P  S   : G  T  T  K  Y  *  N  H  R  N  S  Y  L  C  R  K  G  N  R  T  Y  C  A  S  F  I  F  L  K  V  I  L  V  R  R  T  *  C  T  C  M  A  N  S  W  E  N  T  *  *  F  *  E  T  V  I  F  G  V  H  R  S  R  S  Q  *  </first_frame>
            <second_frame>  R  N  C  E  H  L  G  S  L  P  D  S  I  G  E  L  L  A  L  R  T  M  T  I  T  R  N  D  A  I  T  E  L  P  E  S  V  G  E  L  Q  N  L  V  I  L  R  L  T  K  C  K  R  L  H  K  L  P  D  S  I  G  E  L  K  N  L  V  H  L  L  M  E  E  T  A  V  T  V  L  P  Q  T  F  G  M  L  S  S  L  M  I  L  R  M  G  K  K  P  F  L  Q  :  V  P  Q  S  T  E  I  T  E  T  A  T  Y  A  E  R  E  T  V  P  I  V  L  P  S  S  F  S  K  L  S  L  L  E  E  L  N  A  R  A  W  R  I  V  G  K  I  P  D  D  F  E  K  L  S  S  L  E  F  I  D  L  G  H  N  D </second_frame>
            <third_frame>   G  T  V  S  T  L  D  H  Y  P  I  P  L  E  N  Y  *  L  L  E  Q  *  L  L  L  E  M  M  L  S  R  S  C  Q  N  Q  L  E  S  C  R  I  S  S  Y  *  D  *  P  N  V  S  V  C  T  N  C  Q  I  L  L  G  N  *  R  T  *  Y  T  C  *  W  R  R  L  Q  *  Q  Y  Y  L  K  L  L  G  C  Y  R  A  *  *  F  *  G  W  E  R  S  L  S  F  R :   Y  H  K  V  L  K  S  Q  K  Q  L  P  M  Q  K  G  K  P  Y  L  L  C  F  L  H  L  S  Q  S  Y  P  C  *  K  N  L  M  H  V  H  G  E  *  L  G  K  Y  L  M  I  L  R  N  C  H  L  W  S  S  S  I  S  V  T  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98710" stop="98405"/>
                    <exon start="98332" stop="98135"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNCEHLGSLPDSIGELLALRTMTITRNDAITELPESVGELQNLVILRLTKCKRLHKLPDSIGELKNLVHLLMEETAVTVLPQTFGMLSSLMILRMGKKPFLQVPQSTEITETATYAERETVPIVLPSSFSKLSLLEELNARAWRIVGKIPDDFEKLSSLEFIDLGHND</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="101106" PGL_stop="100227"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101106" e_stop="100500"/>
            <exon e_start="100241" e_stop="100227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.972"/>
          <exon-only e_score="0.867"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="101106" e_stop="100500" e_length="607"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="100499" i_stop="100242" i_length="258"/>
          </intron>
          <exon e_serial="2" e_score="0.867">
            <gDNA_exon_boundary e_start="100241" e_stop="100227" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101106" stop="100500"/>
              <exon start="100241" stop="100227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599595" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACAAAGAAGTTCTGATAGAAGACATCGTTGACGAGACGTTTGAGGTGAGAGAATTGGGTGATACTGACTCACTAAAACTATTCAGTTACCATGCATTTAGAAGACCAGACCCATCCCCAACTTTTCTGAAATTATCTAAGCAAATTGTCTCAATTACTGGAAAGCTACCATTGGCTCTCGAAGTTTTTGGTTCTTTCTTGTTTGATAAAAGAAGCGAGGAGGAATGGGTAGATGCTCTAGGAAAGCTAAAACAAATTCGCTCACCCCGTCTTCAAGACGTCTTGAAAATAAGTTACGATGGTCTTGATGATGAAGAGAAGTGTATATTCCTGGATGTTGCATGTTTATTTCTTGATCAACTAGATAAGAAAGTCGAAAATGTAATTGATGTGATGGAAGGATGTGGTTTTAGAGCCAGGATTGCTTTTGACACATTGACCACTAGATCATTGATTAAGGTGATTGATGGTGGGGACTTGTGGATGCATGACCAGATAAGAGATATGGGAAGACAGATTGTTAGGCAAGAAGGCTTTTCCGATCCTGGAAAGCGCAGCAGGCTCTGGGATGTTGCTGATGTTTTGAGTGTGCTACAAGGAAGAAAG : GGAACACAACATATC</gDNA_template>
            <first_frame> K  Q  R  S  S  D  R  R  H  R  *  R  D  V  *  G  E  R  I  G  *  Y  *  L  T  K  T  I  Q  L  P  C  I  *  K  T  R  P  I  P  N  F  S  E  I  I  *  A  N  C  L  N  Y  W  K  A  T  I  G  S  R  S  F  W  F  F  L  V  *  *  K  K  R  G  G  M  G  R  C  S  R  K  A  K  T  N  S  L  T  P  S  S  R  R  L  E  N  K  L  R  W  S  *  *  *  R  E  V  Y  I  P  G  C  C  M  F  I  S  *  S  T  R  *  E  S  R  K  C  N  *  C  D  G  R  M  W  F  *  S  Q  D  C  F  *  H  I  D  H  *  I  I  D  *  G  D  *  W  W  G  L  V  D  A  *  P  D  K  R  Y  G  K  T  D  C  *  A  R  R  L  F  R  S  W  K  A  Q  Q  A  L  G  C  C  *  C  F  E  C  A  T  R  K  K   : G  N  T  T  Y  </first_frame>
            <second_frame>  N  K  E  V  L  I  E  D  I  V  D  E  T  F  E  V  R  E  L  G  D  T  D  S  L  K  L  F  S  Y  H  A  F  R  R  P  D  P  S  P  T  F  L  K  L  S  K  Q  I  V  S  I  T  G  K  L  P  L  A  L  E  V  F  G  S  F  L  F  D  K  R  S  E  E  E  W  V  D  A  L  G  K  L  K  Q  I  R  S  P  R  L  Q  D  V  L  K  I  S  Y  D  G  L  D  D  E  E  K  C  I  F  L  D  V  A  C  L  F  L  D  Q  L  D  K  K  V  E  N  V  I  D  V  M  E  G  C  G  F  R  A  R  I  A  F  D  T  L  T  T  R  S  L  I  K  V  I  D  G  G  D  L  W  M  H  D  Q  I  R  D  M  G  R  Q  I  V  R  Q  E  G  F  S  D  P  G  K  R  S  R  L  W  D  V  A  D  V  L  S  V  L  Q  G  R  K  :  G  T  Q  H  I </second_frame>
            <third_frame>   T  K  K  F  *  *  K  T  S  L  T  R  R  L  R  *  E  N  W  V  I  L  T  H  *  N  Y  S  V  T  M  H  L  E  D  Q  T  H  P  Q  L  F  *  N  Y  L  S  K  L  S  Q  L  L  E  S  Y  H  W  L  S  K  F  L  V  L  S  C  L  I  K  E  A  R  R  N  G  *  M  L  *  E  S  *  N  K  F  A  H  P  V  F  K  T  S  *  K  *  V  T  M  V  L  M  M  K  R  S  V  Y  S  W  M  L  H  V  Y  F  L  I  N  *  I  R  K  S  K  M  *  L  M  *  W  K  D  V  V  L  E  P  G  L  L  L  T  H  *  P  L  D  H  *  L  R  *  L  M  V  G  T  C  G  C  M  T  R  *  E  I  W  E  D  R  L  L  G  K  K  A  F  P  I  L  E  S  A  A  G  S  G  M  L  L  M  F  *  V  C  Y  K  E  E  R :   E  H  N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101105" stop="100500"/>
                    <exon start="100241" stop="100227"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKEVLIEDIVDETFEVRELGDTDSLKLFSYHAFRRPDPSPTFLKLSKQIVSITGKLPLALEVFGSFLFDKRSEEEWVDALGKLKQIRSPRLQDVLKISYDGLDDEEKCIFLDVACLFLDQLDKKVENVIDVMEGCGFRARIAFDTLTTRSLIKVIDGGDLWMHDQIRDMGRQIVRQEGFSDPGKRSRLWDVADVLSVLQGRKGTQHI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="117094" PGL_stop="119220"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117094" e_stop="117306"/>
            <exon e_start="118263" e_stop="119220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.822" e_score="0.967"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="117094" e_stop="117306" e_length="213"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.822">
            <gDNA_intron_boundary i_start="117307" i_stop="118262" i_length="956"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="118263" e_stop="119220" e_length="958"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117094" stop="117306"/>
              <exon start="118263" stop="118684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117094" stop="117306"/>
              <exon start="118263" stop="118682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118419" stop="119220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118471" stop="119047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582670" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAAACTGAGACTCCTCCAAATCAATCATGTTAAATTGGTTGGAGATTTCAAGCTATTACCTGCTGACCTAAAGTGGCTGCAGTGGAAAGGTTGCCCTTTGGAAGTTATTCCTCCAGAGTTGTTGTCCCGAAAGATTGCAGTTCTTGATATATCGGAGAGCATGATCACACAGGTCTGGATCAAGAAAAAGTGGAATTTATACCAGAACAAG : ATGGCAGAGCAGCTGAAGGTTATGAATCTACGTAGGTGTCGCCAACTTAAGGACATCCCTGATTTATCTGGACTTCAATTGGAGAAGCTGATTCTTGAGGAATGCAATGAACTGGTTAAGATCCATCCATCAATTGGAGACTTGACTATGTTGACCCTTCTAAACATGAAGGGTTGTAAGAATCTTTTGGCATTTCCAGATGATGTGTCTGGATTGAAACGTCTTGAAGTACTTATCCTATCTGATTGCTCAAGTCTAACAAAATTACCAGAGGACTTAGGTGGCTGGAAATCCTTGAGAGAGCTTCTTCTTGATGGTACCGCAATAACAGAGCTACCTAACTCTATCTTCCGCCTGAAGAATCTTCAGATGTTGAATTTAAATGATTGCTGGTCTTTGAAGTTGTTGCCTACAGCTATCGGGAATCTAAGTTCGCTGAGCTCTCTATCTCTTAGTGGATCAGCTTTAAAGGAATTGCCTGATTCAATTGGAAATTTGAAAGATCTTGAGGAATTAAGTTTGAGAATGTGCAAGGGACTCATCTCACTTCCTGATTCCCTCGGAAATCTTAGATCATTAATACGACTTTATCTTGACAACAGCTCCATAAAAGAATTGCCACCTTCTGTTGGTTCATTATCTCAATTGAAGTTCCTTTCACTCAGCAATTGCAAGTCCTTTAGTGAGTTGCCCAATTTCAAGAATAGCTTCTCGTCATTGATTAGGCTTTGTCTACAAGGGACCTCAGTTAGTGAACAAAGTTTCCAGTTAGGAAGCTTCGAGTCCCTTGAGATTCTTGAGCTGGGGTACTGCACTTCAATCAGATCTTTATCTAGCTCAATTGGAAAGATGTCATGTTTAACTACTTTGGACCTACATAATACATCAATTTCTGAGTTGCCAGACGAGATATGTTTATTGGAAAAACTTTGGGAGCTGAACCTGAACAACTGTTTGA</gDNA_template>
            <first_frame> V  K  L  R  L  L  Q  I  N  H  V  K  L  V  G  D  F  K  L  L  P  A  D  L  K  W  L  Q  W  K  G  C  P  L  E  V  I  P  P  E  L  L  S  R  K  I  A  V  L  D  I  S  E  S  M  I  T  Q  V  W  I  K  K  K  W  N  L  Y  Q  N  K  :  M  A  E  Q  L  K  V  M  N  L  R  R  C  R  Q  L  K  D  I  P  D  L  S  G  L  Q  L  E  K  L  I  L  E  E  C  N  E  L  V  K  I  H  P  S  I  G  D  L  T  M  L  T  L  L  N  M  K  G  C  K  N  L  L  A  F  P  D  D  V  S  G  L  K  R  L  E  V  L  I  L  S  D  C  S  S  L  T  K  L  P  E  D  L  G  G  W  K  S  L  R  E  L  L  L  D  G  T  A  I  T  E  L  P  N  S  I  F  R  L  K  N  L  Q  M  L  N  L  N  D  C  W  S  L  K  L  L  P  T  A  I  G  N  L  S  S  L  S  S  L  S  L  S  G  S  A  L  K  E  L  P  D  S  I  G  N  L  K  D  L  E  E  L  S  L  R  M  C  K  G  L  I  S  L  P  D  S  L  G  N  L  R  S  L  I  R  L  Y  L  D  N  S  S  I  K  E  L  P  P  S  V  G  S  L  S  Q  L  K  F  L  S  L  S  N  C  K  S  F  S  E  L  P  N  F  K  N  S  F  S  S  L  I  R  L  C  L  Q  G  T  S  V  S  E  Q  S  F  Q  L  G  S  F  E  S  L  E  I  L  E  L  G  Y  C  T  S  I  R  S  L  S  S  S  I  G  K  M  S  C  L  T  T  L  D  L  H  N  T  S  I  S  E  L  P  D  E  I  C  L  L  E  K  L  W  E  L  N  L  N  N  C  L  </first_frame>
            <second_frame>  S  N  *  D  S  S  K  S  I  M  L  N  W  L  E  I  S  S  Y  Y  L  L  T  *  S  G  C  S  G  K  V  A  L  W  K  L  F  L  Q  S  C  C  P  E  R  L  Q  F  L  I  Y  R  R  A  *  S  H  R  S  G  S  R  K  S  G  I  Y  T  R  T  R :   W  Q  S  S  *  R  L  *  I  Y  V  G  V  A  N  L  R  T  S  L  I  Y  L  D  F  N  W  R  S  *  F  L  R  N  A  M  N  W  L  R  S  I  H  Q  L  E  T  *  L  C  *  P  F  *  T  *  R  V  V  R  I  F  W  H  F  Q  M  M  C  L  D  *  N  V  L  K  Y  L  S  Y  L  I  A  Q  V  *  Q  N  Y  Q  R  T  *  V  A  G  N  P  *  E  S  F  F  L  M  V  P  Q  *  Q  S  Y  L  T  L  S  S  A  *  R  I  F  R  C  *  I  *  M  I  A  G  L  *  S  C  C  L  Q  L  S  G  I  *  V  R  *  A  L  Y  L  L  V  D  Q  L  *  R  N  C  L  I  Q  L  E  I  *  K  I  L  R  N  *  V  *  E  C  A  R  D  S  S  H  F  L  I  P  S  E  I  L  D  H  *  Y  D  F  I  L  T  T  A  P  *  K  N  C  H  L  L  L  V  H  Y  L  N  *  S  S  F  H  S  A  I  A  S  P  L  V  S  C  P  I  S  R  I  A  S  R  H  *  L  G  F  V  Y  K  G  P  Q  L  V  N  K  V  S  S  *  E  A  S  S  P  L  R  F  L  S  W  G  T  A  L  Q  S  D  L  Y  L  A  Q  L  E  R  C  H  V  *  L  L  W  T  Y  I  I  H  Q  F  L  S  C  Q  T  R  Y  V  Y  W  K  N  F  G  S  *  T  *  T  T  V  * </second_frame>
            <third_frame>   Q  T  E  T  P  P  N  Q  S  C  *  I  G  W  R  F  Q  A  I  T  C  *  P  K  V  A  A  V  E  R  L  P  F  G  S  Y  S  S  R  V  V  V  P  K  D  C  S  S  *  Y  I  G  E  H  D  H  T  G  L  D  Q  E  K  V  E  F  I  P  E  Q   : D  G  R  A  A  E  G  Y  E  S  T  *  V  S  P  T  *  G  H  P  *  F  I  W  T  S  I  G  E  A  D  S  *  G  M  Q  *  T  G  *  D  P  S  I  N  W  R  L  D  Y  V  D  P  S  K  H  E  G  L  *  E  S  F  G  I  S  R  *  C  V  W  I  E  T  S  *  S  T  Y  P  I  *  L  L  K  S  N  K  I  T  R  G  L  R  W  L  E  I  L  E  R  A  S  S  *  W  Y  R  N  N  R  A  T  *  L  Y  L  P  P  E  E  S  S  D  V  E  F  K  *  L  L  V  F  E  V  V  A  Y  S  Y  R  E  S  K  F  A  E  L  S  I  S  *  W  I  S  F  K  G  I  A  *  F  N  W  K  F  E  R  S  *  G  I  K  F  E  N  V  Q  G  T  H  L  T  S  *  F  P  R  K  S  *  I  I  N  T  T  L  S  *  Q  Q  L  H  K  R  I  A  T  F  C  W  F  I  I  S  I  E  V  P  F  T  Q  Q  L  Q  V  L  *  *  V  A  Q  F  Q  E  *  L  L  V  I  D  *  A  L  S  T  R  D  L  S  *  *  T  K  F  P  V  R  K  L  R  V  P  *  D  S  *  A  G  V  L  H  F  N  Q  I  F  I  *  L  N  W  K  D  V  M  F  N  Y  F  G  P  T  *  Y  I  N  F  *  V  A  R  R  D  M  F  I  G  K  T  L  G  A  E  P  E  Q  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C05HBa0115F01.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117094" stop="117306"/>
                    <exon start="118263" stop="119219"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1170</number_coding_nucleotides>
                  <number_encoded_amino_acids>390</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKLRLLQINHVKLVGDFKLLPADLKWLQWKGCPLEVIPPELLSRKIAVLDISESMITQVWIKKKWNLYQNKMAEQLKVMNLRRCRQLKDIPDLSGLQLEKLILEECNELVKIHPSIGDLTMLTLLNMKGCKNLLAFPDDVSGLKRLEVLILSDCSSLTKLPEDLGGWKSLRELLLDGTAITELPNSIFRLKNLQMLNLNDCWSLKLLPTAIGNLSSLSSLSLSGSALKELPDSIGNLKDLEELSLRMCKGLISLPDSLGNLRSLIRLYLDNSSIKELPPSVGSLSQLKFLSLSNCKSFSELPNFKNSFSSLIRLCLQGTSVSEQSFQLGSFESLEILELGYCTSIRSLSSSIGKMSCLTTLDLHNTSISELPDEICLLEKLWELNLNNCL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 76 chains have been computed
$ 
$ memory statistics:
$ 140456 bytes spliced alignments in total
$ 45 spliced alignments have been stored
$ 3121 bytes was the average size of a spliced alignment
$ 19808 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1650 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 79 backtrace matrices have been allocated
$ 
$ date finished: 2010-02-05 14:34:11
-->
